Query 047676
Match_columns 576
No_of_seqs 322 out of 3866
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 13:31:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.5E-63 5.4E-68 552.3 42.5 560 2-571 29-590 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.1E-54 6.7E-59 479.6 36.4 501 72-575 68-570 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.7E-38 5.8E-43 299.0 6.3 365 74-464 79-447 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.2E-37 2.6E-42 294.6 5.8 355 173-551 82-439 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.8E-40 6.1E-45 299.0 -20.2 511 23-570 26-544 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 2.5E-35 5.5E-40 266.9 -14.4 477 73-575 45-527 (565)
7 KOG0618 Serine/threonine phosp 100.0 7.7E-34 1.7E-38 283.1 -6.7 487 50-562 23-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.3E-33 2.8E-38 281.4 -7.1 483 54-563 4-487 (1081)
9 KOG0444 Cytoskeletal regulator 99.9 2E-30 4.4E-35 247.9 -6.5 365 48-444 7-374 (1255)
10 KOG0444 Cytoskeletal regulator 99.9 6.7E-30 1.4E-34 244.4 -4.2 368 169-545 7-379 (1255)
11 PLN03210 Resistant to P. syrin 99.9 1.3E-22 2.8E-27 226.4 27.6 357 48-418 532-903 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.9E-22 4.1E-27 225.0 27.7 340 210-563 551-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 3.7E-25 7.9E-30 201.0 -3.5 274 76-349 70-358 (498)
14 KOG4237 Extracellular matrix p 99.9 2E-24 4.3E-29 196.3 -3.4 402 48-465 67-497 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 4.1E-18 8.8E-23 176.7 16.8 260 241-543 201-460 (788)
16 PRK15387 E3 ubiquitin-protein 99.7 8.7E-17 1.9E-21 166.9 16.8 265 217-524 201-465 (788)
17 cd00116 LRR_RI Leucine-rich re 99.7 6.9E-19 1.5E-23 171.3 -0.6 272 270-564 3-319 (319)
18 PRK15370 E3 ubiquitin-protein 99.7 4.2E-16 9.2E-21 162.9 18.1 247 97-373 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.5E-18 5.4E-23 167.4 -0.1 277 245-540 2-319 (319)
20 PRK15370 E3 ubiquitin-protein 99.6 2.2E-15 4.8E-20 157.6 12.7 246 266-541 179-428 (754)
21 KOG0617 Ras suppressor protein 99.6 6.9E-17 1.5E-21 130.4 -4.8 162 406-573 31-193 (264)
22 KOG0617 Ras suppressor protein 99.5 1E-16 2.2E-21 129.5 -5.5 156 71-254 31-186 (264)
23 PLN03150 hypothetical protein; 99.4 9.2E-13 2E-17 137.6 12.8 144 2-156 372-526 (623)
24 KOG1909 Ran GTPase-activating 99.3 3.2E-13 6.8E-18 122.2 -2.8 187 378-564 86-310 (382)
25 KOG4658 Apoptotic ATPase [Sign 99.2 6.7E-12 1.5E-16 133.8 4.2 199 49-254 524-730 (889)
26 KOG3207 Beta-tubulin folding c 99.2 3.1E-12 6.7E-17 119.2 -0.8 138 382-519 195-341 (505)
27 KOG3207 Beta-tubulin folding c 99.1 7.9E-12 1.7E-16 116.5 0.1 208 334-541 118-339 (505)
28 KOG1259 Nischarin, modulator o 99.1 1.3E-11 2.9E-16 109.3 0.8 129 432-566 284-413 (490)
29 KOG1909 Ran GTPase-activating 99.1 3.2E-12 6.9E-17 115.8 -3.1 210 69-278 26-283 (382)
30 PF14580 LRR_9: Leucine-rich r 99.1 7.7E-11 1.7E-15 100.4 4.7 123 432-558 19-146 (175)
31 KOG4658 Apoptotic ATPase [Sign 99.1 3.6E-11 7.9E-16 128.3 2.9 180 49-232 546-732 (889)
32 PF14580 LRR_9: Leucine-rich r 99.0 2E-10 4.4E-15 97.8 4.9 110 452-566 15-127 (175)
33 COG4886 Leucine-rich repeat (L 99.0 4.3E-10 9.4E-15 112.6 6.5 197 77-282 97-294 (394)
34 COG4886 Leucine-rich repeat (L 99.0 8.9E-10 1.9E-14 110.4 8.2 197 341-545 97-294 (394)
35 KOG1259 Nischarin, modulator o 98.9 2.5E-10 5.4E-15 101.4 1.2 127 384-516 284-411 (490)
36 KOG0532 Leucine-rich repeat (L 98.9 3.5E-11 7.7E-16 115.9 -5.1 189 364-562 79-270 (722)
37 PLN03150 hypothetical protein; 98.8 6.6E-09 1.4E-13 108.9 8.6 106 434-539 420-526 (623)
38 PF13855 LRR_8: Leucine rich r 98.8 2E-09 4.3E-14 75.2 2.7 61 504-564 1-61 (61)
39 KOG0532 Leucine-rich repeat (L 98.8 1.4E-10 3.1E-15 111.8 -4.3 177 70-255 72-248 (722)
40 PF13855 LRR_8: Leucine rich r 98.8 3.4E-09 7.4E-14 74.0 2.5 61 480-540 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.7 1.5E-09 3.3E-14 108.7 -1.0 223 335-569 93-322 (414)
42 KOG0531 Protein phosphatase 1, 98.6 4.3E-09 9.3E-14 105.5 -1.8 195 95-301 70-267 (414)
43 KOG2120 SCF ubiquitin ligase, 98.6 1.4E-09 3E-14 96.7 -5.8 176 361-538 186-373 (419)
44 KOG1859 Leucine-rich repeat pr 98.5 2.4E-09 5.2E-14 106.4 -6.2 179 377-565 102-292 (1096)
45 KOG4341 F-box protein containi 98.4 3E-09 6.5E-14 99.1 -7.3 253 287-539 162-437 (483)
46 KOG2982 Uncharacterized conser 98.4 6.6E-08 1.4E-12 86.2 0.8 200 312-511 70-286 (418)
47 KOG2120 SCF ubiquitin ligase, 98.4 4.1E-09 8.9E-14 93.8 -6.9 176 385-562 186-373 (419)
48 KOG2982 Uncharacterized conser 98.4 8.5E-08 1.8E-12 85.5 0.5 199 359-558 70-285 (418)
49 KOG4579 Leucine-rich repeat (L 98.3 2.6E-08 5.6E-13 78.2 -3.7 140 433-575 28-169 (177)
50 KOG4341 F-box protein containi 98.3 1.4E-08 3.1E-13 94.7 -6.1 275 289-563 138-437 (483)
51 KOG1859 Leucine-rich repeat pr 98.2 1.1E-08 2.4E-13 101.9 -8.7 106 406-516 185-291 (1096)
52 COG5238 RNA1 Ran GTPase-activa 98.2 9.5E-08 2.1E-12 84.1 -3.2 91 70-160 27-135 (388)
53 PF08263 LRRNT_2: Leucine rich 98.1 5.7E-06 1.2E-10 52.5 3.9 41 2-45 3-43 (43)
54 PRK15386 type III secretion pr 98.0 2.9E-05 6.4E-10 74.9 9.8 138 380-539 48-188 (426)
55 PF13306 LRR_5: Leucine rich r 98.0 1.9E-05 4.1E-10 65.1 6.4 110 64-178 3-112 (129)
56 KOG1644 U2-associated snRNP A' 97.9 2.2E-05 4.8E-10 66.5 6.1 104 97-202 42-149 (233)
57 PF13306 LRR_5: Leucine rich r 97.9 3.8E-05 8.1E-10 63.3 7.5 105 403-512 7-111 (129)
58 PRK15386 type III secretion pr 97.9 4.5E-05 9.7E-10 73.7 8.8 160 356-538 48-210 (426)
59 PF12799 LRR_4: Leucine Rich r 97.9 1E-05 2.3E-10 51.4 2.4 36 529-565 2-37 (44)
60 COG5238 RNA1 Ran GTPase-activa 97.8 5.1E-06 1.1E-10 73.5 0.1 185 333-517 88-316 (388)
61 KOG1947 Leucine rich repeat pr 97.8 1.8E-06 3.9E-11 89.4 -3.8 83 358-440 241-329 (482)
62 KOG1644 U2-associated snRNP A' 97.7 7.1E-05 1.5E-09 63.5 6.2 85 120-206 41-126 (233)
63 PF12799 LRR_4: Leucine Rich r 97.7 3.4E-05 7.4E-10 49.0 2.8 36 98-134 2-37 (44)
64 KOG3665 ZYG-1-like serine/thre 97.6 1.1E-05 2.4E-10 84.7 -0.5 36 478-513 248-284 (699)
65 KOG4579 Leucine-rich repeat (L 97.6 3.6E-06 7.8E-11 66.4 -3.2 138 409-549 28-167 (177)
66 KOG3665 ZYG-1-like serine/thre 97.6 2.4E-05 5.2E-10 82.2 1.6 131 406-538 146-285 (699)
67 KOG2123 Uncharacterized conser 97.4 6.2E-06 1.3E-10 73.2 -5.0 100 455-558 18-123 (388)
68 KOG2739 Leucine-rich acidic nu 97.3 0.00011 2.5E-09 65.2 1.5 101 455-557 42-148 (260)
69 KOG2123 Uncharacterized conser 97.3 1.4E-05 3E-10 71.0 -4.2 100 407-510 18-123 (388)
70 KOG1947 Leucine rich repeat pr 97.1 2.8E-05 6E-10 80.5 -4.3 12 240-251 187-198 (482)
71 KOG2739 Leucine-rich acidic nu 96.8 0.00069 1.5E-08 60.3 2.0 85 96-182 42-129 (260)
72 PF00560 LRR_1: Leucine Rich R 96.6 0.00071 1.5E-08 35.6 0.6 22 553-575 1-22 (22)
73 KOG3864 Uncharacterized conser 95.3 0.0016 3.5E-08 55.6 -2.6 81 458-538 103-186 (221)
74 KOG3864 Uncharacterized conser 94.8 0.0033 7.2E-08 53.7 -2.2 84 433-516 102-188 (221)
75 KOG4308 LRR-containing protein 94.6 0.00019 4.2E-09 72.1 -12.0 182 361-542 88-304 (478)
76 PF00560 LRR_1: Leucine Rich R 94.2 0.016 3.5E-07 30.3 0.3 18 530-548 2-19 (22)
77 KOG4308 LRR-containing protein 93.8 0.0003 6.6E-09 70.8 -12.5 202 339-540 89-330 (478)
78 PF13504 LRR_7: Leucine rich r 92.6 0.074 1.6E-06 25.7 1.2 13 553-565 2-14 (17)
79 smart00370 LRR Leucine-rich re 90.1 0.24 5.2E-06 27.1 1.8 22 552-573 2-23 (26)
80 smart00369 LRR_TYP Leucine-ric 90.1 0.24 5.2E-06 27.1 1.8 22 552-573 2-23 (26)
81 PF13516 LRR_6: Leucine Rich r 89.5 0.078 1.7E-06 28.4 -0.5 16 552-567 2-17 (24)
82 smart00370 LRR Leucine-rich re 86.3 0.65 1.4E-05 25.3 1.9 12 529-540 3-14 (26)
83 smart00369 LRR_TYP Leucine-ric 86.3 0.65 1.4E-05 25.3 1.9 12 529-540 3-14 (26)
84 KOG0473 Leucine-rich repeat pr 85.8 0.02 4.4E-07 50.2 -6.5 81 49-133 43-123 (326)
85 KOG0473 Leucine-rich repeat pr 82.5 0.029 6.3E-07 49.2 -6.9 86 68-156 37-122 (326)
86 smart00364 LRR_BAC Leucine-ric 67.1 4 8.7E-05 22.3 1.3 17 553-570 3-19 (26)
87 smart00365 LRR_SD22 Leucine-ri 67.0 5 0.00011 22.0 1.7 13 504-516 2-14 (26)
88 KOG4242 Predicted myosin-I-bin 62.3 50 0.0011 33.1 8.6 66 264-331 164-232 (553)
89 KOG3763 mRNA export factor TAP 62.3 4 8.6E-05 41.2 1.3 67 477-543 215-285 (585)
90 smart00368 LRR_RI Leucine rich 60.8 3.5 7.6E-05 23.0 0.4 12 505-516 3-14 (28)
91 smart00367 LRR_CC Leucine-rich 58.2 7.1 0.00015 21.2 1.3 15 551-565 1-16 (26)
92 KOG3763 mRNA export factor TAP 38.8 16 0.00036 37.1 1.4 66 405-470 215-284 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.5e-63 Score=552.35 Aligned_cols=560 Identities=41% Similarity=0.594 Sum_probs=519.7
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCccceeeeCCCCCEEEEEcCCCCcccccCCcccCCCCCCCEEECC
Q 047676 2 EESHALLRWKTSLQNHNNGSSLSSWTVNNVTKIGPCAWVGIHCNHGGRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLW 81 (576)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (576)
+|+.+|++||+++.++ ..+..+|+ .+.++|.|.|+.|...++|++|+++++++.+.++. +|..+++|++|+++
T Consensus 29 ~~~~~l~~~~~~~~~~--~~~~~~w~----~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls 101 (968)
T PLN00113 29 EELELLLSFKSSINDP--LKYLSNWN----SSADVCLWQGITCNNSSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLS 101 (968)
T ss_pred HHHHHHHHHHHhCCCC--cccCCCCC----CCCCCCcCcceecCCCCcEEEEEecCCCccccCCh-HHhCCCCCCEEECC
Confidence 5788999999999866 56678997 57789999999999888999999999999998877 89999999999999
Q ss_pred CCCCcccCCccc-cCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcc
Q 047676 82 SNQLFGNIPPQI-GNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGL 160 (576)
Q Consensus 82 ~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 160 (576)
+|.+.+.+|..+ ..+++|++|++++|.+.+.+|. +.+++|++|++++|.+.+..|..++.+++|++|++++|.+...
T Consensus 102 ~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 179 (968)
T PLN00113 102 NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179 (968)
T ss_pred CCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence 999988777665 4999999999999999877775 5689999999999999988999999999999999999999888
Q ss_pred cCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCccccccCCccccCC
Q 047676 161 IPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNL 240 (576)
Q Consensus 161 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 240 (576)
.|..+.++++|++|++++|.+.+..|..+.++++|+.|++++|.+.+.+|..+.++++|++|++++|.+....|..+..+
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 89999999999999999999998899999999999999999999998999999999999999999999988888899999
Q ss_pred CCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEc
Q 047676 241 KSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSF 320 (576)
Q Consensus 241 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l 320 (576)
++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 99999999999998888888889999999999999999888988999999999999999998888888999999999999
Q ss_pred ccCcccccCchhcccCCCCcEEEccCCcccccCCC-CCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccc
Q 047676 321 YQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGE 399 (576)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 399 (576)
.+|.+.+..|..+..+++|+.|++++|.+....+. +..+++|+.+++.+|.+....+..+..+++|+.|++++|.++..
T Consensus 340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 99999988999999999999999999998876665 77789999999999999988888999999999999999999988
Q ss_pred cCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccC
Q 047676 400 ISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLL 479 (576)
Q Consensus 400 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 479 (576)
.+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+ ..++|+.|++++|++....+..+..+
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence 88889999999999999999998888888899999999999999988777655 45899999999999998888889999
Q ss_pred CCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeC
Q 047676 480 VQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNL 559 (576)
Q Consensus 480 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 559 (576)
++|+.|++++|.+.+..|..+.++++|++|++++|++++..|..+..+++|++|++++|++.+.+|..+..+++|+.+++
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l 578 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578 (968)
T ss_pred hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEec
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCcc
Q 047676 560 SHNSLSGVIPRC 571 (576)
Q Consensus 560 ~~~~l~~~~p~~ 571 (576)
++|++++.+|+.
T Consensus 579 s~N~l~~~~p~~ 590 (968)
T PLN00113 579 SHNHLHGSLPST 590 (968)
T ss_pred cCCcceeeCCCc
Confidence 999999999954
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.1e-54 Score=479.56 Aligned_cols=501 Identities=38% Similarity=0.561 Sum_probs=466.3
Q ss_pred CCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCcccc-CCCCCCEEeCCCCcCCCCCCcccCCCCCCCEE
Q 047676 72 FPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIG-HLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNL 150 (576)
Q Consensus 72 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 150 (576)
..+++.|+++++.+.+..+.+|..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+++..|. ..+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 35789999999999988889999999999999999999877887654 899999999999999877765 568999999
Q ss_pred EccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCcccc
Q 047676 151 TLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLF 230 (576)
Q Consensus 151 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 230 (576)
++++|.+....|..+.++++|++|++++|.+.+..|..+.++++|+.|++++|.+.+.+|..+.++++|+.|++++|.+.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 99999998888889999999999999999998889999999999999999999999889999999999999999999998
Q ss_pred ccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCcccc
Q 047676 231 GLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLS 310 (576)
Q Consensus 231 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 310 (576)
...|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+....+..+.
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 88899999999999999999999888888899999999999999999888888899999999999999999888888889
Q ss_pred CCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCC-CCCCCCCcEEEccCccceeecCccccCCCCCcEE
Q 047676 311 NLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFI 389 (576)
Q Consensus 311 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 389 (576)
.+++|+.|++.+|.+.+..|..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+.+..+..+..+++|+.|
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 385 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence 999999999999999988899999999999999999999876665 7889999999999999998888889899999999
Q ss_pred EccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeeccccccc
Q 047676 390 DLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLS 469 (576)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 469 (576)
++++|.+....+..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee
Confidence 99999998888888999999999999999999889999999999999999999999888888889999999999999988
Q ss_pred ccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCc
Q 047676 470 GQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQIC 549 (576)
Q Consensus 470 ~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 549 (576)
+..+..+ ..++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++.+|..+.
T Consensus 466 ~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 544 (968)
T PLN00113 466 GGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544 (968)
T ss_pred eecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence 7666544 568999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEeCcCCccccccCcccccc
Q 047676 550 IMQSLEKLNLSHNSLSGVIPRCFEEM 575 (576)
Q Consensus 550 ~~~~L~~L~l~~~~l~~~~p~~~~~~ 575 (576)
.+++|++|++++|++++.+|..+.++
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l 570 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIPKNLGNV 570 (968)
T ss_pred CcccCCEEECCCCcccccCChhHhcC
Confidence 99999999999999999999987764
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-38 Score=299.05 Aligned_cols=365 Identities=23% Similarity=0.228 Sum_probs=200.5
Q ss_pred CCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEcc
Q 047676 74 HLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLY 153 (576)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 153 (576)
..+.||+++|++....+..|.++++|+++++.+|.+. .+|....-..+|+.|++.+|.+...-...++.++.|+.||++
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 3455666666666555555666666666666666655 555544445556666666666655555555556666666666
Q ss_pred ccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCccccccC
Q 047676 154 ANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLI 233 (576)
Q Consensus 154 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 233 (576)
.|.++.+....|..-.++++|++++|+++......|..+.+|..|.++.|.++ ...
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit------------------------tLp 213 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT------------------------TLP 213 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc------------------------ccC
Confidence 66665554455555555555555555555444444444445555555555444 444
Q ss_pred CccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCC
Q 047676 234 PSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLT 313 (576)
Q Consensus 234 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 313 (576)
+..|..+++|+.|++..|+|.......|.++++|+.|.+..|.+...-...|..+.++++|+|..|++......++-++.
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence 44444455555555555554433334445555555555555555444444455555555555555555444444444555
Q ss_pred CCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCC-CCCCCCCcEEEccCccceeecCccccCCCCCcEEEcc
Q 047676 314 NLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLS 392 (576)
Q Consensus 314 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 392 (576)
.|+.|++++|.+..+.+..++.+++|++|+++.|.+....+. +..+..|+.|.++.|.+.......|.++.+|++|+++
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 555555555555555555555555555555555555544333 4445555555555555555555555555666666666
Q ss_pred CCcccc---ccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecc
Q 047676 393 HNNFYG---EISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILA 464 (576)
Q Consensus 393 ~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 464 (576)
.|.++- .....|.++++|++|.+.+|++......+|.+++.|+.|+|.+|.+..+.+..|..+ .|++|.+.
T Consensus 374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 374 SNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred CCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 655542 123345556666666666666654444556666666666666666655555566555 55555444
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-37 Score=294.64 Aligned_cols=355 Identities=26% Similarity=0.246 Sum_probs=144.1
Q ss_pred EEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCC
Q 047676 173 ILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNK 252 (576)
Q Consensus 173 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 252 (576)
+|++++|++..+.+..|.++++|+++++.+|.++ .+|.......+++.|++.+|.+..+....++.++.|++||++.|.
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~ 160 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL 160 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence 3444444444444444444444555544444444 344333333345555555555555555555555555555555555
Q ss_pred CcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchh
Q 047676 253 LSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKE 332 (576)
Q Consensus 253 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 332 (576)
|..+....|..-.++++|++++|.|+......|.++.+|..|.|+.|+++......|.+++.|+.|++..|.+.-...-.
T Consensus 161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt 240 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT 240 (873)
T ss_pred hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh
Confidence 54443333333334444444444444333333333444444444444443333333333333333333333332222223
Q ss_pred cccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCE
Q 047676 333 YQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDS 412 (576)
Q Consensus 333 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 412 (576)
|. ++++|+.|.+..|.+.......|..+.++++|++..|++.......+.++++|+.
T Consensus 241 Fq-----------------------gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 241 FQ-----------------------GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQ 297 (873)
T ss_pred hc-----------------------CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhh
Confidence 33 3333333333333333333333333444444444444333333333333444444
Q ss_pred EEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcC
Q 047676 413 LDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRL 492 (576)
Q Consensus 413 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~ 492 (576)
|++++|.|...-++.+..+++|++|+|+.|.+...-+..|..+..|++|++++|+++..-...|.++.+|++||++.|.+
T Consensus 298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred hccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 44444443333333333444444444444443333333333344444444444443333223333344444444444433
Q ss_pred cccc---chhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCC
Q 047676 493 SNSI---PESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIM 551 (576)
Q Consensus 493 ~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~ 551 (576)
+..+ ...|.++++|+.|.+.+|++..+...+|.++.+|++|++.+|.|..+.|.+|..+
T Consensus 378 s~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 378 SWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred EEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 3211 1223334444444444444432222334444444444444444433333333333
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.8e-40 Score=298.96 Aligned_cols=511 Identities=30% Similarity=0.401 Sum_probs=365.1
Q ss_pred CCCCCCCCCCCCCCCccceeeeCCCCCEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEE
Q 047676 23 LSSWTVNNVTKIGPCAWVGIHCNHGGRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYL 102 (576)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~c~~~~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 102 (576)
.+-|+|+.-.+.+.--|+. ..+..+.++.+++....+ .+.++..+.+|++++|.+. .+|.+++.+..++.+
T Consensus 26 ~~vyq~~~t~~e~e~wW~q------v~l~~lils~N~l~~l~~--dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l 96 (565)
T KOG0472|consen 26 TEVYQINLTTGEGENWWEQ------VDLQKLILSHNDLEVLRE--DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSL 96 (565)
T ss_pred HHHHHHHhhccchhhhhhh------cchhhhhhccCchhhccH--hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHh
Confidence 3456655443333333443 356777888888775443 4788999999999999986 678889999999999
Q ss_pred ECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCc
Q 047676 103 DLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLS 182 (576)
Q Consensus 103 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 182 (576)
+.++|++. .+|+.+..+..|+.++++++.+. .+|+.++.+..|+.++..+|++.+. |..+..+.+|..+++.+|.+.
T Consensus 97 ~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~sl-p~~~~~~~~l~~l~~~~n~l~ 173 (565)
T KOG0472|consen 97 NVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSL-PEDMVNLSKLSKLDLEGNKLK 173 (565)
T ss_pred hcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccccC-chHHHHHHHHHHhhccccchh
Confidence 99999987 88999999999999999999998 8888999999999999999998876 667788999999999999988
Q ss_pred ccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccC
Q 047676 183 GSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFG 262 (576)
Q Consensus 183 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 262 (576)
..+.....++.|+.++...|-++ .+|..++.+..|+-|++..|.+... | .|..|..|++++++.|++.....+...
T Consensus 174 -~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~l-P-ef~gcs~L~Elh~g~N~i~~lpae~~~ 249 (565)
T KOG0472|consen 174 -ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFL-P-EFPGCSLLKELHVGENQIEMLPAEHLK 249 (565)
T ss_pred -hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccC-C-CCCccHHHHHHHhcccHHHhhHHHHhc
Confidence 44444445999999999888776 7888899999999999999988754 3 789999999999999999866556666
Q ss_pred CCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhccc-----CC
Q 047676 263 NLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQN-----LV 337 (576)
Q Consensus 263 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----l~ 337 (576)
.++++.+|+++.|+++ ..|..+..+.+|++|++++|.++ ..+..++++ .|+.|.+.+|++...--+.+.. ++
T Consensus 250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLK 326 (565)
T ss_pred ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence 8899999999999998 67888888999999999999998 567778888 8899999999875321111110 11
Q ss_pred CCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCC--CCCEEEc
Q 047676 338 KLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCP--KLDSLDF 415 (576)
Q Consensus 338 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l 415 (576)
.|+. .+..-..... +.=.-.................+.+.|++++-+++......|..-. -....++
T Consensus 327 yLrs-~~~~dglS~s----------e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnf 395 (565)
T KOG0472|consen 327 YLRS-KIKDDGLSQS----------EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNF 395 (565)
T ss_pred HHHH-hhccCCCCCC----------cccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEec
Confidence 1211 0000000000 0000000000000111112244566666666666644444443322 3667777
Q ss_pred cCCcccccCCccccCCCCCCE-EeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCcc
Q 047676 416 STNNITGNIPSEIGYSSQLEV-LDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSN 494 (576)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~L~~-L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~ 494 (576)
++|++. .+|..+..+..+.+ +.++++.+ +..|..++.+++|..|++++|.+. ..|..+..+..|+.|+++.|.+.
T Consensus 396 skNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr- 471 (565)
T KOG0472|consen 396 SKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR- 471 (565)
T ss_pred ccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-
Confidence 777776 56665555554444 44444444 366667777788888888877665 34445666777888888888776
Q ss_pred ccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCccccccCc
Q 047676 495 SIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPR 570 (576)
Q Consensus 495 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~ 570 (576)
..|.....+..++.+-.++|++....++.+.++.+|.+||+.+|.+ ..+|..+.++++|++|.++|||++ +|.
T Consensus 472 ~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl-q~IPp~LgnmtnL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 472 MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL-QQIPPILGNMTNLRHLELDGNPFR--QPR 544 (565)
T ss_pred cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch-hhCChhhccccceeEEEecCCccC--CCH
Confidence 5666666666677777777888666666688888888888888888 556777888888888888888886 554
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=2.5e-35 Score=266.94 Aligned_cols=477 Identities=32% Similarity=0.382 Sum_probs=284.4
Q ss_pred CCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEc
Q 047676 73 PHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTL 152 (576)
Q Consensus 73 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 152 (576)
..+..+++++|.+. .+.+.+.++..|.+|++.+|++. .+|.+++.+..++.++.+++.+. .+|..++.+.+|.++++
T Consensus 45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 45566677777665 33344666677777777777665 56666666777777777777666 66666666666666666
Q ss_pred cccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCcccccc
Q 047676 153 YANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGL 232 (576)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 232 (576)
+.+.+... +..+..+..|+.++..+|.+. ..|.++..+.++..+++.++.+.. .|...-+++.|++++...|-++ .
T Consensus 122 s~n~~~el-~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 122 SSNELKEL-PDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-T 197 (565)
T ss_pred cccceeec-CchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-c
Confidence 66666544 344555666666666666655 455555555566666666665552 2222333555555555554443 3
Q ss_pred CCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCC
Q 047676 233 IPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNL 312 (576)
Q Consensus 233 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l 312 (576)
.|..++.+.+|..|++..|.+.. .| .|.++..|+++++..|++.....+....++++..|++.+|++. ..+..++-+
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL 274 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL 274 (565)
T ss_pred CChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence 34445555555555555555542 22 4555555555555555554222222234555555555555554 334444444
Q ss_pred CCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCC---CCcEEEccCccceeecCccccCCCCCcEE
Q 047676 313 TNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLT---SLVRVRLNRNYLTGNISESFYIYPNLTFI 389 (576)
Q Consensus 313 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 389 (576)
.+|..|++++|.++ ..|..++++ +|+.|.+.+|++......+-+.. -|++|.= .++ .+....- +.=
T Consensus 275 rsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~---~dglS~s---e~~ 343 (565)
T KOG0472|consen 275 RSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIK---DDGLSQS---EGG 343 (565)
T ss_pred hhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhc---cCCCCCC---ccc
Confidence 55555555555544 233344444 45555555544422111100000 0000000 000 0000000 000
Q ss_pred EccCCccccccCcccCCCCCCCEEEccCCcccccCCcc-cc--CCCCCCEEeCCCCcccccCcccccCccCCceeecccc
Q 047676 390 DLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSE-IG--YSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQN 466 (576)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 466 (576)
...................+.+.|++++-+++ .+|.. |. .-.-.+.++++.|++. .+|..+..++.+...-+..+
T Consensus 344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsn 421 (565)
T KOG0472|consen 344 TETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSN 421 (565)
T ss_pred ccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhc
Confidence 00000000111122344667889999988888 44543 32 2234788999999987 66777666666555444444
Q ss_pred cccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCc
Q 047676 467 QLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPS 546 (576)
Q Consensus 467 ~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 546 (576)
...+..+..+..+++|.-|++++|.+. .+|..++.+..|+.|+++.|.+ ...|..+..+..++.+-.++|++....|.
T Consensus 422 n~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~nqi~~vd~~ 499 (565)
T KOG0472|consen 422 NKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLASNNQIGSVDPS 499 (565)
T ss_pred CccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHhccccccccChH
Confidence 555577778889999999999999998 5677788889999999999999 58888888888999999999999777777
Q ss_pred cCcCCCCCceEeCcCCccccccCcccccc
Q 047676 547 QICIMQSLEKLNLSHNSLSGVIPRCFEEM 575 (576)
Q Consensus 547 ~l~~~~~L~~L~l~~~~l~~~~p~~~~~~ 575 (576)
.+.++.+|.+|++.+|++. .+|+.+.+|
T Consensus 500 ~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm 527 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNNDLQ-QIPPILGNM 527 (565)
T ss_pred HhhhhhhcceeccCCCchh-hCChhhccc
Confidence 7999999999999999997 788877765
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=7.7e-34 Score=283.07 Aligned_cols=487 Identities=27% Similarity=0.263 Sum_probs=362.3
Q ss_pred EEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCC
Q 047676 50 VNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLS 129 (576)
Q Consensus 50 i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 129 (576)
+..++++.|-+...- -....+..+|++||+++|.+. ..|..+..+.+|+.|+++.|.+. ..|....++.+|++|.|.
T Consensus 23 ~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 556666665444322 223445556999999999875 67778888899999999999886 777888899999999999
Q ss_pred CCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcC
Q 047676 130 KNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSI 209 (576)
Q Consensus 130 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 209 (576)
+|.+. .+|..+..+++|+.|+++.|.+... |..+..+..++.+.+++|......+... ++.+++..+.+.+.+
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~-Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFGPI-PLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSF 172 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccCCC-chhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccch
Confidence 99888 8899999999999999999988765 6677888888888888883322222221 666777777777666
Q ss_pred CccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCC
Q 047676 210 PHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLK 289 (576)
Q Consensus 210 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 289 (576)
+..+..+.. .|++.+|.+.. ..+..+++|+.+....|++.... -.-++++.|+.+.|.+....+ ...-.
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~ 241 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDV--HPVPL 241 (1081)
T ss_pred hcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecc--ccccc
Confidence 666666555 68888887762 34677888888888888775432 123678888988888773222 12235
Q ss_pred CCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccC
Q 047676 290 FLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNR 369 (576)
Q Consensus 290 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 369 (576)
+|++++++.+.+.. .+.++..+.+|+.+.+..|.+. ..|..+....+|+.+.+..|.+....+.......|++|++..
T Consensus 242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 78899999998884 4478888999999999888885 566777778889999999998887777777789999999999
Q ss_pred ccceeecCccccCCCC-CcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccC
Q 047676 370 NYLTGNISESFYIYPN-LTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEI 448 (576)
Q Consensus 370 ~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 448 (576)
|.+.......+..... ++.|+.+.+.+.......-...+.|+.|++.+|.+++.....+.+.++|+.|+|++|.+...-
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence 8888766644444443 777777777776544434445778899999999998877777888899999999999886444
Q ss_pred cccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCC
Q 047676 449 PTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELI 528 (576)
Q Consensus 449 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 528 (576)
...+.++..|++|+++||++.. ++..+..++.|++|...+|.+. ..| .+..++.|+.++++.|+++.........-+
T Consensus 400 as~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p 476 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSP 476 (1081)
T ss_pred HHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCc
Confidence 5567888899999999998874 4467788889999999888887 566 577888999999999988543322222227
Q ss_pred CCCEEeCCCCcCcccCCccCcCCCCCceEeCcCC
Q 047676 529 HLSELDLSYNFLGREIPSQICIMQSLEKLNLSHN 562 (576)
Q Consensus 529 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 562 (576)
+|++||++||.-.....+.|..+.++..+++.-+
T Consensus 477 ~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 477 NLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 8999999999653444445555556665555544
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-33 Score=281.42 Aligned_cols=483 Identities=29% Similarity=0.299 Sum_probs=378.9
Q ss_pred EcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcC
Q 047676 54 NLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKL 133 (576)
Q Consensus 54 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 133 (576)
+.+++++. .||...+. ...+..|++..|.+...-.+.+..+.+|+.|++++|.+. .+|..+..+++|+.|+++.|.+
T Consensus 4 d~s~~~l~-~ip~~i~~-~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 4 DASDEQLE-LIPEQILN-NEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred ccccccCc-ccchhhcc-HHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 44444443 34442333 334888888888665332345667778999999999886 8899999999999999999998
Q ss_pred CCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccc
Q 047676 134 SGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSL 213 (576)
Q Consensus 134 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 213 (576)
. ..|....++.+|+++.+.+|.... .|..+..+++|+.|++++|.+. ..|..+..+..+..+..++|......+
T Consensus 81 ~-~vp~s~~~~~~l~~lnL~~n~l~~-lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg--- 154 (1081)
T KOG0618|consen 81 R-SVPSSCSNMRNLQYLNLKNNRLQS-LPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLG--- 154 (1081)
T ss_pred h-hCchhhhhhhcchhheeccchhhc-CchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhc---
Confidence 8 788889999999999999988664 5889999999999999999987 677888888889999999883332222
Q ss_pred cCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCe
Q 047676 214 GNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSE 293 (576)
Q Consensus 214 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 293 (576)
.. .++.+++..+.+....+.++..+.. .++++.|.+.. ..+..+.+|+.+....+.+... .-.-++++.
T Consensus 155 -~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~ 223 (1081)
T KOG0618|consen 155 -QT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSEL----EISGPSLTA 223 (1081)
T ss_pred -cc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceE----EecCcchhe
Confidence 22 2778888888776666666665555 69999998862 3456678899999988877632 233478999
Q ss_pred EEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccce
Q 047676 294 LNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLT 373 (576)
Q Consensus 294 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 373 (576)
|+.+.|.++..... ..-.+|++++++.+.+.. .|.|+..+++|+.++...|.+......+....+|+.+.+..|.+.
T Consensus 224 L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~ 300 (1081)
T KOG0618|consen 224 LYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE 300 (1081)
T ss_pred eeeccCcceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh
Confidence 99999988733222 233689999999999984 569999999999999999999766666778889999999998887
Q ss_pred eecCccccCCCCCcEEEccCCccccccCcccCCCCC-CCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccc
Q 047676 374 GNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPK-LDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTEL 452 (576)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 452 (576)
.+ +...+.+.+|++|++..|.+.......+.-... |..|+.+.+++.......-...+.|+.|++.+|.+++..-..+
T Consensus 301 yi-p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l 379 (1081)
T KOG0618|consen 301 YI-PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL 379 (1081)
T ss_pred hC-CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh
Confidence 54 445567899999999999987554444444443 7777777777763322233457789999999999998877789
Q ss_pred cCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCE
Q 047676 453 GKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSE 532 (576)
Q Consensus 453 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 532 (576)
.+.+.|+.|+++.|++..+....+.++..|++|++|||+++ .+|..+..++.|++|..-+|++. ..| .+..+++|+.
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence 99999999999999999887788899999999999999999 67788899999999999999995 666 6788999999
Q ss_pred EeCCCCcCcccCCccCcCCCCCceEeCcCCc
Q 047676 533 LDLSYNFLGREIPSQICIMQSLEKLNLSHNS 563 (576)
Q Consensus 533 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 563 (576)
+|++.|+++...-......++|++|+++||.
T Consensus 457 lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred EecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 9999999976533333334899999999997
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=2e-30 Score=247.86 Aligned_cols=365 Identities=27% Similarity=0.368 Sum_probs=244.8
Q ss_pred CCEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEe
Q 047676 48 GRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLN 127 (576)
Q Consensus 48 ~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 127 (576)
+-|+.+|+++|+++|.-.+.....++.++.|.|....+. .+|+.++.|.+|+.|.+++|++. .+-..++.+|.||.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 457888899999987665557888888888888888775 67888888888888888888876 3344577888888888
Q ss_pred CCCCcCCC-CCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCC
Q 047676 128 LSKNKLSG-SIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLS 206 (576)
Q Consensus 128 l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 206 (576)
++.|++.. -+|..+.++..|..|++++|++... |..+.+-+++-+|++++|.+..+....+.+++.|-.|++++|++.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 88888754 4677788888888888888887754 667777788888888888887555556677777778888887776
Q ss_pred CcCCccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCc-ccCCcccCCCCCccEEEccCCcccccccccc
Q 047676 207 GSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLS-GPIPHFFGNLTNLGVLYIYNNLLSGSIPCEI 285 (576)
Q Consensus 207 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 285 (576)
.+|..+..+..|++|.+++|.+......-+..+..|++|++++.+-+ ...|..+..+.+|..++++.|.+. ..|+.+
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl 241 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL 241 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH
Confidence 56666777777777777777765554444555566666666665432 234455555666666666666665 455566
Q ss_pred cCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEE
Q 047676 286 GNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRV 365 (576)
Q Consensus 286 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 365 (576)
.++++|+.|+|++|+++.. ......-.+|++|+++.|.++ ..|.++..+++|+.|.+.+|.
T Consensus 242 y~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~Nk----------------- 302 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNK----------------- 302 (1255)
T ss_pred hhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCc-----------------
Confidence 6666666666666666532 222233344555555555554 444555555555555554444
Q ss_pred EccCcccee-ecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcc
Q 047676 366 RLNRNYLTG-NISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHI 444 (576)
Q Consensus 366 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 444 (576)
++. -++..++.+..|+.+...+|.+. ..+..++.|++|+.|.++.|.+. .+|+.+.-++.|+.||+..|+-
T Consensus 303 ------L~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 303 ------LTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred ------ccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 332 22334445555666665555543 55666777777777777777666 5677777777777777777654
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=6.7e-30 Score=244.36 Aligned_cols=368 Identities=29% Similarity=0.381 Sum_probs=278.7
Q ss_pred CCCCEEEeecccCc-ccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCccccccCCccccCCCCCCEEE
Q 047676 169 TNLAILYLYNNSLS-GSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLE 247 (576)
Q Consensus 169 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 247 (576)
+-.+-+++++|.++ +..|.....+++++.|.+..+++. .+|+.++.+.+|++|.++.|++..+. ..+..+|.|+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH-GELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh-hhhccchhhHHHh
Confidence 33444555555555 345556666666666666666665 56777777777777777777766543 3466777777777
Q ss_pred ccCCCCcc-cCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCccc
Q 047676 248 LGNNKLSG-PIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLS 326 (576)
Q Consensus 248 l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 326 (576)
++.|++.. ..|..+..+..|..|++++|++. ..|..+....++-.|+|++|.|..+....|.++..|-.|++++|.+.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 77777632 33444556777888888888877 56777777777888888888887666666777888888888888876
Q ss_pred ccCchhcccCCCCcEEEccCCcccc-cCCCCCCCCCCcEEEccCccce-eecCccccCCCCCcEEEccCCccccccCccc
Q 047676 327 GAIPKEYQNLVKLTKLLLGNNQFQG-PIPNLRNLTSLVRVRLNRNYLT-GNISESFYIYPNLTFIDLSHNNFYGEISSDW 404 (576)
Q Consensus 327 ~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 404 (576)
..|.....+..|+.|.+++|++.. .+..+..+++|+.|.+++.+-+ ..++.++..+.+|..++++.|.+. ..+..+
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl 241 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL 241 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH
Confidence 455567778888888888887642 2333666778888888875433 456677788889999999998876 667788
Q ss_pred CCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeeccccccccc-CCcccccCCCCC
Q 047676 405 GRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQ-LSPKLGLLVQLE 483 (576)
Q Consensus 405 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~ 483 (576)
..+++|+.|++++|+++ .+......-.+|++|+++.|+++ .+|..+++++.|+.|.+.+|+++-. +|..++++.+|+
T Consensus 242 y~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred hhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 88999999999999998 44444555668999999999987 7899999999999999999988744 567788999999
Q ss_pred EeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCC
Q 047676 484 HLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIP 545 (576)
Q Consensus 484 ~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 545 (576)
++..++|.+. ..|+.+..|+.|+.|.|+.|++. .+|+++.-++.|+.||+..|+...-.|
T Consensus 320 vf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 320 VFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred HHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 9999999888 88999999999999999999984 788889989999999999996644333
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.3e-22 Score=226.40 Aligned_cols=357 Identities=22% Similarity=0.270 Sum_probs=219.8
Q ss_pred CCEEEEEcCCCCccc-ccCCcccCCCCCCCEEECCCCC------CcccCCccccCCC-CCcEEECcCCcCCCCCCccccC
Q 047676 48 GRVNSINLTNIGLKG-TLHDFSFSSFPHLAYLDLWSNQ------LFGNIPPQIGNIS-KLKYLDLSSNSFFGAIPPQIGH 119 (576)
Q Consensus 48 ~~i~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~------~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~ 119 (576)
.+++.+.+....+.. .+...+|.++++|+.|.+..+. +...+|+.|..++ +||.|.+.++.+. .+|..| .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 456666655443332 3445579999999999996653 2234666776665 6999999999876 778777 5
Q ss_pred CCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceee
Q 047676 120 LSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTA 199 (576)
Q Consensus 120 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 199 (576)
..+|++|++.++.+. .++..+..+++|+.++++++......| .+..+++|++|++++|......|..+..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 789999999999988 678888899999999999876444445 477889999999999877667888888899999999
Q ss_pred ccCCcCCCcCCccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccc
Q 047676 200 LSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSG 279 (576)
Q Consensus 200 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 279 (576)
+++|...+.+|..+ ++++|+.|++++|......|. ...+|+.|+++++.+... |..+ .+++|++|.+.++....
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEK 761 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccc-cccc-cccccccccccccchhh
Confidence 99876555666654 678888888888864433332 235778888888877533 2222 45667777766543211
Q ss_pred c-------ccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCccccc
Q 047676 280 S-------IPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGP 352 (576)
Q Consensus 280 ~-------~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 352 (576)
. .+......++|+.|++++|......+..+.++++|+.|++++|......|... .+++|+.|++++|.....
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence 0 01111223455555555554433444445555555555555554333334333 345555555555543322
Q ss_pred CCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCC
Q 047676 353 IPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTN 418 (576)
Q Consensus 353 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 418 (576)
.+.. ..+|+.|++.++.+.. ++..+..+++|+.|++++|+....++.....+++|+.+++++|
T Consensus 841 ~p~~--~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 841 FPDI--STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred cccc--ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 2221 2345555555544442 2333444555555555554333233333344444555555444
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.9e-22 Score=225.05 Aligned_cols=340 Identities=24% Similarity=0.239 Sum_probs=243.2
Q ss_pred CccccCCCCCcEEEccCccc------cccCCccccCCC-CCCEEEccCCCCcccCCcccCCCCCccEEEccCCccccccc
Q 047676 210 PHSLGNLSNLVILFLDNNLL------FGLIPSELRNLK-SLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIP 282 (576)
Q Consensus 210 ~~~~~~l~~L~~L~l~~~~~------~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 282 (576)
+..|.++++|+.|.+..+.. ....|..+..++ +|+.|++.++.+... |..+ ...+|++|++.++.+. .++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCcC-CccCCcEEECcCcccc-ccc
Confidence 34567788888888765431 223345555554 688888888877643 4444 3578888999888876 456
Q ss_pred ccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCC
Q 047676 283 CEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSL 362 (576)
Q Consensus 283 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 362 (576)
..+..+++|+.++++++......+ .+..+++|+.|++.+|......|..+..+++|+.|++++|.....+|...++++|
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL 706 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSL 706 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCC
Confidence 667778889999988765433333 4677888999999888777777888888889999999888766666664578888
Q ss_pred cEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccc-------cCCccccCCCCCC
Q 047676 363 VRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITG-------NIPSEIGYSSQLE 435 (576)
Q Consensus 363 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~ 435 (576)
+.|++++|......+. ..++|+.|+++++.+... +..+ .+++|++|.+.++.... ..+.....+++|+
T Consensus 707 ~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CEEeCCCCCCcccccc---ccCCcCeeecCCCccccc-cccc-cccccccccccccchhhccccccccchhhhhccccch
Confidence 9999988865433332 246788888888887633 3222 57788888887654321 1111233457888
Q ss_pred EEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCc
Q 047676 436 VLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNH 515 (576)
Q Consensus 436 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~ 515 (576)
.|++++|......|..+.++++|+.|++++|.....++..+ .+++|+.|++++|......|.. .++|+.|++++|.
T Consensus 782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTG 857 (1153)
T ss_pred heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCC
Confidence 99998887777788888888899999998886554555444 6788899999888754344432 3678889999888
Q ss_pred CCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCc
Q 047676 516 FSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNS 563 (576)
Q Consensus 516 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 563 (576)
+. .+|..+..+++|++|++++|+....+|..+..+++|+.+++++|+
T Consensus 858 i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 858 IE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred Cc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 85 667788888899999999886556677777788888888888884
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=3.7e-25 Score=200.96 Aligned_cols=274 Identities=26% Similarity=0.234 Sum_probs=135.5
Q ss_pred CEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCC-CcCCCCCCcccCCCCCCCEEEccc
Q 047676 76 AYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSK-NKLSGSIPLEVGRLSSLNNLTLYA 154 (576)
Q Consensus 76 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~ 154 (576)
..|+|..|.|+..-+++|+.+++||.|||++|.|..+-|.+|.+++.|-.|-+.+ |+|++.....|+++.+|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 3455555555444444555555555555555555545555555555544444444 444433333445555555555555
Q ss_pred cccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCC------------cCCccccCCCCCcEE
Q 047676 155 NCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSG------------SIPHSLGNLSNLVIL 222 (576)
Q Consensus 155 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------~~~~~~~~l~~L~~L 222 (576)
|++.-+...+|..+++|..|.+.+|.+.......|..+..++.+.+..+.... ..+-.++...-....
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 55544444555555555555555555443333344444555554444333110 011111111111111
Q ss_pred EccCccccccCCccccCC-CCCCE-EEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEccccc
Q 047676 223 FLDNNLLFGLIPSELRNL-KSLYF-LELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNK 300 (576)
Q Consensus 223 ~l~~~~~~~~~~~~l~~l-~~L~~-L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 300 (576)
.+...++....+..|... ..+.. +.-..+.........|..+++|++|++++|+++.+.+.+|.+...+++|.|..|+
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence 122222222222222111 11111 1111111111222335666777777777777776666677777777777777776
Q ss_pred ccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcc
Q 047676 301 LSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQF 349 (576)
Q Consensus 301 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 349 (576)
+.......|.++..|+.|++++|.++...|-+|..+..|..+++-.|++
T Consensus 310 l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 310 LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 6655566666777777777777777766677777777777777665554
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=2e-24 Score=196.26 Aligned_cols=402 Identities=20% Similarity=0.177 Sum_probs=258.9
Q ss_pred CCEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcC-CcCCCCCCccccCCCCCCEE
Q 047676 48 GRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSS-NSFFGAIPPQIGHLSYLKTL 126 (576)
Q Consensus 48 ~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L 126 (576)
...+.|.+..|.++ .+|+.+|+.+++||.||||+|.|..+.|++|..+++|..|-+.+ |+|+...-..|.++..|+.|
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 37899999999998 56666999999999999999999999999999999988887666 89986666779999999999
Q ss_pred eCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcc------------cCCccccCCCc
Q 047676 127 NLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSG------------SIPSEIGNLKF 194 (576)
Q Consensus 127 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------~~~~~~~~l~~ 194 (576)
.+.-|++.-.....|..+++|..|.+.+|.+..+....|..+..++++.+..+.... ..+..++....
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 999999987778889999999999999999988766788999999999887765211 11112222211
Q ss_pred cceeeccCCcCCCcCCccccCC-CCCcEEEccCcccccc-CCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEc
Q 047676 195 LSRTALSHNKLSGSIPHSLGNL-SNLVILFLDNNLLFGL-IPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYI 272 (576)
Q Consensus 195 L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 272 (576)
..-..+.+.++....+..+... ..+..--.+.+..... ....|..+++|+++++++|.++.+...+|.+...+++|.+
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 1111222222221111111111 1111111112222222 2345788899999999999998888888888889999999
Q ss_pred cCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCccccc-Cchhcc-cCCCCcEEEccCCccc
Q 047676 273 YNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGA-IPKEYQ-NLVKLTKLLLGNNQFQ 350 (576)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~ 350 (576)
..|++..+....|.++..|+.|+|.+|+++...+..|..+..|.++++-.|++... -..|+. ++.+=...
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~-------- 377 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVV-------- 377 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCC--------
Confidence 99988766667788888999999999999888888888888899998887775421 111111 11110000
Q ss_pred ccCCCCCCCCCCcEEEccCccceeecCc------------cccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCC
Q 047676 351 GPIPNLRNLTSLVRVRLNRNYLTGNISE------------SFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTN 418 (576)
Q Consensus 351 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 418 (576)
..+..+..-.++.+.+++..+...-.. .-..++.+....=..+......+..+ ....+.+++.+|
T Consensus 378 -~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl~gn 454 (498)
T KOG4237|consen 378 -GNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYLDGN 454 (498)
T ss_pred -CCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhcccc
Confidence 111122222233333332222111100 00112233322111122222222221 335677888888
Q ss_pred cccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeeccc
Q 047676 419 NITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQ 465 (576)
Q Consensus 419 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 465 (576)
.++ .+|.. ...+| .+++++|++.......|.++..|..+.++.
T Consensus 455 ~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 455 AIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred hhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEec
Confidence 887 44444 45567 888888887755566777888887777764
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=4.1e-18 Score=176.65 Aligned_cols=260 Identities=24% Similarity=0.287 Sum_probs=126.3
Q ss_pred CCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEc
Q 047676 241 KSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSF 320 (576)
Q Consensus 241 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l 320 (576)
..-..|+++.+.++. .|..+. ++|+.|++.+|.++. +|. ..++|++|++++|.++.. +. ..++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence 445678888887774 333332 367888888887773 442 246777777777777633 21 2356677777
Q ss_pred ccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCcccccc
Q 047676 321 YQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEI 400 (576)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 400 (576)
.+|.+.. .|. ....|+.|++++|.+.... . ..++|+.|++++|.+..... ....|+.|.+++|.+...
T Consensus 270 s~N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~LP-~--~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~L- 337 (788)
T PRK15387 270 FSNPLTH-LPA---LPSGLCKLWIFGNQLTSLP-V--LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSL- 337 (788)
T ss_pred cCCchhh-hhh---chhhcCEEECcCCcccccc-c--cccccceeECCCCccccCCC----CcccccccccccCccccc-
Confidence 7666552 222 1245666666666554322 1 12456666666655553211 123455555555554421
Q ss_pred CcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCC
Q 047676 401 SSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLV 480 (576)
Q Consensus 401 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 480 (576)
+. ...+|+.|++++|++. .+|.. .++|+.|++++|++.+ +|.. ..+|+.|++++|.+... +. ..+
T Consensus 338 P~---lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~L-P~---l~s 402 (788)
T PRK15387 338 PT---LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSL-PV---LPS 402 (788)
T ss_pred cc---cccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCC-CC---ccc
Confidence 11 1134555555555554 22321 2344555555554442 2221 12344455555444421 11 123
Q ss_pred CCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCccc
Q 047676 481 QLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGRE 543 (576)
Q Consensus 481 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 543 (576)
+|+.|++++|.++. +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++.
T Consensus 403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 44445555544442 2221 123444444444443 3344444444444444444444443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=8.7e-17 Score=166.85 Aligned_cols=265 Identities=25% Similarity=0.270 Sum_probs=177.4
Q ss_pred CCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEc
Q 047676 217 SNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNL 296 (576)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 296 (576)
..-..|+++++.++.. |..+. ++|+.|++.+|+++... . ..++|++|++++|.++. +|. ..++|+.|++
T Consensus 201 ~~~~~LdLs~~~LtsL-P~~l~--~~L~~L~L~~N~Lt~LP-~---lp~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCCcC-Ccchh--cCCCEEEccCCcCCCCC-C---CCCCCcEEEecCCccCc-ccC---cccccceeec
Confidence 3456788888877743 44443 47888888888887432 2 24678888888888774 342 2467888888
Q ss_pred ccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeec
Q 047676 297 GFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNI 376 (576)
Q Consensus 297 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 376 (576)
.+|.+... +. ..+.|+.|++++|.+.. .|. ..++|+.|++++|.+... +.+ ...|+.|++.+|.++.+.
T Consensus 270 s~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l--p~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 270 FSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL--PSELCKLWAYNNQLTSLP 338 (788)
T ss_pred cCCchhhh-hh---chhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC--cccccccccccCcccccc
Confidence 88877632 22 23567788888887763 332 246788888888877653 221 235777888887776432
Q ss_pred CccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCcc
Q 047676 377 SESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLS 456 (576)
Q Consensus 377 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 456 (576)
. ..++|+.|++++|.+... +. ..++|+.|++++|++. .+|.. +++|+.|++++|++.+ .|.. .+
T Consensus 339 ~----lp~~Lq~LdLS~N~Ls~L-P~---lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s 402 (788)
T PRK15387 339 T----LPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PS 402 (788)
T ss_pred c----cccccceEecCCCccCCC-CC---CCcccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---cc
Confidence 1 124788888888887743 22 2457788888888877 34542 3568888888888763 3432 35
Q ss_pred CCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccc
Q 047676 457 FFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKL 524 (576)
Q Consensus 457 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 524 (576)
+|+.|++++|.+... +. .+.+|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+
T Consensus 403 ~L~~LdLS~N~LssI-P~---l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCCCC-Cc---chhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 688888888887643 32 1346778888888887 567777788888888888888876655544
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=6.9e-19 Score=171.31 Aligned_cols=272 Identities=24% Similarity=0.258 Sum_probs=152.6
Q ss_pred EEccCCccc-ccccccccCCCCCCeEEccccccccc----CCccccCCCCCcEEEcccCcccc------cCchhcccCCC
Q 047676 270 LYIYNNLLS-GSIPCEIGNLKFLSELNLGFNKLSNS----IPVSLSNLTNLVFLSFYQNSLSG------AIPKEYQNLVK 338 (576)
Q Consensus 270 L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~l~~ 338 (576)
|++.++.++ ......+..+.+|+.++++++.++.. ....+...+.+++++++++.+.. ..+..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 444444444 12223334455566677666665322 12223344556666655554431 11122333444
Q ss_pred CcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCC---CCCcEEEccCCccccc----cCcccCCC-CCC
Q 047676 339 LTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIY---PNLTFIDLSHNNFYGE----ISSDWGRC-PKL 410 (576)
Q Consensus 339 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~----~~~~~~~~-~~L 410 (576)
| +.|++++|.+.......+..+ ++|+.|++++|.+.+. ....+..+ ++|
T Consensus 83 L-----------------------~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L 139 (319)
T cd00116 83 L-----------------------QELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPAL 139 (319)
T ss_pred e-----------------------eEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCc
Confidence 4 444444444432222222222 3366666666665421 12233445 777
Q ss_pred CEEEccCCccccc----CCccccCCCCCCEEeCCCCccccc----CcccccCccCCceeeccccccccc----CCccccc
Q 047676 411 DSLDFSTNNITGN----IPSEIGYSSQLEVLDLSSNHIVGE----IPTELGKLSFFIKLILAQNQLSGQ----LSPKLGL 478 (576)
Q Consensus 411 ~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~ 478 (576)
+.|++++|.+++. +...+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+. ....+..
T Consensus 140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~ 219 (319)
T cd00116 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS 219 (319)
T ss_pred eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc
Confidence 7777777776632 233455667788888877776532 222344556788888888876533 2234556
Q ss_pred CCCCCEeeCCCCcCccccchhcc-----CCCCCCEeeCCCCcCCCCc----cccccCCCCCCEEeCCCCcCccc----CC
Q 047676 479 LVQLEHLDLSSNRLSNSIPESLG-----NLVKLHYLNLSNNHFSREI----PIKLEELIHLSELDLSYNFLGRE----IP 545 (576)
Q Consensus 479 ~~~L~~L~ls~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~----~~ 545 (576)
+++|++|++++|.+++.....+. ..+.|++|++++|.++... ...+..+++|+.+++++|.+.+. +.
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 78888888888887753222221 2378889999888886222 23455567889999999988754 33
Q ss_pred ccCcCC-CCCceEeCcCCcc
Q 047676 546 SQICIM-QSLEKLNLSHNSL 564 (576)
Q Consensus 546 ~~l~~~-~~L~~L~l~~~~l 564 (576)
..+... +.|+++++.++++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 300 ESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhhcCCchhhcccCCCCC
Confidence 333334 6888888888764
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=4.2e-16 Score=162.88 Aligned_cols=247 Identities=22% Similarity=0.310 Sum_probs=152.8
Q ss_pred CCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEe
Q 047676 97 SKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYL 176 (576)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 176 (576)
.+...|+++++.++ .+|..+. ++|+.|++++|.++ .+|..+. .+|++|++++|.+..+ |..+. ++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSI-PATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccC-Chhhh--ccccEEEC
Confidence 35667777777666 4555442 46777777777777 4555443 4677777777776654 33222 46777777
Q ss_pred ecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCccc
Q 047676 177 YNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGP 256 (576)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 256 (576)
++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|.++... ..+ .+.|+.|++++|.+...
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLTAL 319 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCccccC
Confidence 777766 4444432 46777777777776 4555443 46777787777766432 222 24677777777777643
Q ss_pred CCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccC
Q 047676 257 IPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNL 336 (576)
Q Consensus 257 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 336 (576)
+..+ .++|+.|++++|.++. +|..+. ++|+.|++++|.+.. .+..+ .+.|++|++++|.+.. .|..+.
T Consensus 320 -P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~-- 387 (754)
T PRK15370 320 -PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTN-LPENLP-- 387 (754)
T ss_pred -Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCC-CCHhHH--
Confidence 2222 2567777887777764 444332 578888888877763 33333 2578888888887763 343332
Q ss_pred CCCcEEEccCCcccccCCC----CCCCCCCcEEEccCccce
Q 047676 337 VKLTKLLLGNNQFQGPIPN----LRNLTSLVRVRLNRNYLT 373 (576)
Q Consensus 337 ~~L~~L~l~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~ 373 (576)
..|+.|++++|.+...... ....+.+..+++.+|.+.
T Consensus 388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 3577778888777643222 233467778888887765
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=2.5e-18 Score=167.42 Aligned_cols=277 Identities=24% Similarity=0.265 Sum_probs=162.6
Q ss_pred EEEccCCCCc-ccCCcccCCCCCccEEEccCCccccc----ccccccCCCCCCeEEcccccccc------cCCccccCCC
Q 047676 245 FLELGNNKLS-GPIPHFFGNLTNLGVLYIYNNLLSGS----IPCEIGNLKFLSELNLGFNKLSN------SIPVSLSNLT 313 (576)
Q Consensus 245 ~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~~------~~~~~~~~l~ 313 (576)
.|++.++.+. ......+..+..|++++++++.++.. ++..+...+++++++++++.+.. .....+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4566666665 22334455667899999999987532 34455667889999999887652 1223456688
Q ss_pred CCcEEEcccCcccccCchhcccCCC---CcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCC-CCCcEE
Q 047676 314 NLVFLSFYQNSLSGAIPKEYQNLVK---LTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIY-PNLTFI 389 (576)
Q Consensus 314 ~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L 389 (576)
+|+.|++++|.+....+..+..+.. |++|++++|.+...... .+...+..+ ++|+.|
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~-------------------~l~~~l~~~~~~L~~L 142 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR-------------------LLAKGLKDLPPALEKL 142 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH-------------------HHHHHHHhCCCCceEE
Confidence 9999999999987555555544444 77777777765421000 111122223 455555
Q ss_pred EccCCcccc----ccCcccCCCCCCCEEEccCCccccc----CCccccCCCCCCEEeCCCCcccccC----cccccCccC
Q 047676 390 DLSHNNFYG----EISSDWGRCPKLDSLDFSTNNITGN----IPSEIGYSSQLEVLDLSSNHIVGEI----PTELGKLSF 457 (576)
Q Consensus 390 ~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~ 457 (576)
++++|.++. .....+..+++|++|++++|.+.+. ++..+...++|+.|++++|.+.+.. ...+..+++
T Consensus 143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 555554441 1122344555666666666655522 1223344456666666666654322 233455666
Q ss_pred CceeecccccccccCCcccc-----cCCCCCEeeCCCCcCccc----cchhccCCCCCCEeeCCCCcCCCCc----cccc
Q 047676 458 FIKLILAQNQLSGQLSPKLG-----LLVQLEHLDLSSNRLSNS----IPESLGNLVKLHYLNLSNNHFSREI----PIKL 524 (576)
Q Consensus 458 L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~ls~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~ 524 (576)
|++|++++|.+.+.....+. ..+.|++|++++|.+++. ....+..+++|+.+++++|++.... ...+
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~ 302 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL 302 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence 77777777766542111111 236788888888877622 2344566678888888888886442 2233
Q ss_pred cCC-CCCCEEeCCCCcC
Q 047676 525 EEL-IHLSELDLSYNFL 540 (576)
Q Consensus 525 ~~l-~~L~~L~l~~~~~ 540 (576)
... +.|++|++.++++
T Consensus 303 ~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 303 LEPGNELESLWVKDDSF 319 (319)
T ss_pred hhcCCchhhcccCCCCC
Confidence 444 6788888877653
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.62 E-value=2.2e-15 Score=157.57 Aligned_cols=246 Identities=24% Similarity=0.320 Sum_probs=149.9
Q ss_pred CccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEcc
Q 047676 266 NLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLG 345 (576)
Q Consensus 266 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 345 (576)
+...|+++++.++ .+|..+. +.++.|++++|.++.. +..+ .++|+.|++++|.+.. +|..+ .+.|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsL-P~~l--~~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELKSL-PENL--QGNIKTLYANSNQLTS-IPATL--PDTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcC-Chhh--ccCCCEEECCCCcccc-CChhh--hccccEEECc
Confidence 4677888888777 3554442 5789999999988743 3332 2588899988888763 44433 2468888888
Q ss_pred CCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCC
Q 047676 346 NNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIP 425 (576)
Q Consensus 346 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 425 (576)
+|.+......+. .+|+.|++++|.+... +..+ +++|+.|++++|.+... +..+ .++|+.|++++|++. .+|
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt-~LP 320 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLT-ALP 320 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCccCcc-cccc--CCCCcEEECCCCccccC-cccc--hhhHHHHHhcCCccc-cCC
Confidence 887764332232 4677788877777643 2222 24677777777766532 2222 246777777777766 334
Q ss_pred ccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCC
Q 047676 426 SEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVK 505 (576)
Q Consensus 426 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~ 505 (576)
..+ .++|+.|++++|.+.+ +|..+. ++|+.|++++|.+.. .+..+ .++|++|++++|.++. +|..+. .+
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~--~s 389 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTN-LPENLP--AA 389 (754)
T ss_pred ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCC-CCHhHH--HH
Confidence 322 3567777777777653 444332 567777777776653 23222 3567777777777663 343333 35
Q ss_pred CCEeeCCCCcCCCCcccccc----CCCCCCEEeCCCCcCc
Q 047676 506 LHYLNLSNNHFSREIPIKLE----ELIHLSELDLSYNFLG 541 (576)
Q Consensus 506 L~~L~l~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~ 541 (576)
|+.|++++|++. .+|..+. .++.+..|++.+|++.
T Consensus 390 L~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 390 LQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 677777777764 3343332 2366677777777664
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=6.9e-17 Score=130.42 Aligned_cols=162 Identities=32% Similarity=0.470 Sum_probs=96.4
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEe
Q 047676 406 RCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHL 485 (576)
Q Consensus 406 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 485 (576)
.+.+.+.|.+++|+++ ..|..+..+.+|+.|++++|++. ..|.+++.+++|+.|+++-+++. ..+..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3445555556666655 44555555666666666666654 44555666666666666655554 455566666666666
Q ss_pred eCCCCcCcc-ccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCcc
Q 047676 486 DLSSNRLSN-SIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSL 564 (576)
Q Consensus 486 ~ls~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 564 (576)
|+++|.+.. ..|..|-.++.|+-|++++|.+ ..+|..++++++|+.|.+++|.+. .+|..+..+.+|++|.|.||++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 666666442 3455555566666666666666 455556666666666666666663 3555566666666666666666
Q ss_pred ccccCcccc
Q 047676 565 SGVIPRCFE 573 (576)
Q Consensus 565 ~~~~p~~~~ 573 (576)
+ ++|..+.
T Consensus 186 ~-vlppel~ 193 (264)
T KOG0617|consen 186 T-VLPPELA 193 (264)
T ss_pred e-ecChhhh
Confidence 5 5554443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=1e-16 Score=129.47 Aligned_cols=156 Identities=31% Similarity=0.506 Sum_probs=81.6
Q ss_pred CCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEE
Q 047676 71 SFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNL 150 (576)
Q Consensus 71 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 150 (576)
.+.+++.|.+|+|+++ ..|..+.++.+|++|++.+|++. .+|..++.+++|+.|++.-|++. .+|.+|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3444555555555554 33334555555555555555554 45555555555555555555444 455555555555555
Q ss_pred EccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCcccc
Q 047676 151 TLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLF 230 (576)
Q Consensus 151 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 230 (576)
++..|.+.. ..+|..|..++.|+.|.++.|.+. .+|..++++++||.|.+.+|.+.
T Consensus 108 dltynnl~e-----------------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 108 DLTYNNLNE-----------------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred hcccccccc-----------------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence 555444322 233444444444555555554444 45555555555666655555544
Q ss_pred ccCCccccCCCCCCEEEccCCCCc
Q 047676 231 GLIPSELRNLKSLYFLELGNNKLS 254 (576)
Q Consensus 231 ~~~~~~l~~l~~L~~L~l~~~~~~ 254 (576)
..|..++.+.+|++|++.+|+++
T Consensus 164 -~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 164 -SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred -hCcHHHHHHHHHHHHhcccceee
Confidence 23445555666666666666655
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.43 E-value=9.2e-13 Score=137.61 Aligned_cols=144 Identities=38% Similarity=0.653 Sum_probs=108.1
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCC-----ccceeeeCCC-----CCEEEEEcCCCCcccccCCcccCC
Q 047676 2 EESHALLRWKTSLQNHNNGSSLSSWTVNNVTKIGPC-----AWVGIHCNHG-----GRVNSINLTNIGLKGTLHDFSFSS 71 (576)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~c~~~-----~~i~~l~l~~~~~~~~~~~~~~~~ 71 (576)
+|.++|+++|.+++.+. ..+|. + ++| .|.|+.|... ..++.|+++++++.+.++. .+..
T Consensus 372 ~~~~aL~~~k~~~~~~~----~~~W~-----g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~-~i~~ 440 (623)
T PLN03150 372 EEVSALQTLKSSLGLPL----RFGWN-----G-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN-DISK 440 (623)
T ss_pred hHHHHHHHHHHhcCCcc----cCCCC-----C-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH-HHhC
Confidence 57889999999998662 14786 2 344 7999999632 2478888888888887777 6778
Q ss_pred CCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCC-CCCCEE
Q 047676 72 FPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRL-SSLNNL 150 (576)
Q Consensus 72 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L 150 (576)
+++|+.|+|++|.+.+.+|..+..+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+... .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 8888888888888877777778888888888888888877788888888888888888888777777766543 345556
Q ss_pred Eccccc
Q 047676 151 TLYANC 156 (576)
Q Consensus 151 ~l~~~~ 156 (576)
++.+|.
T Consensus 521 ~~~~N~ 526 (623)
T PLN03150 521 NFTDNA 526 (623)
T ss_pred EecCCc
Confidence 555553
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.25 E-value=3.2e-13 Score=122.25 Aligned_cols=187 Identities=24% Similarity=0.301 Sum_probs=140.3
Q ss_pred ccccCCCCCcEEEccCCccccccC----cccCCCCCCCEEEccCCcccccCC-------------ccccCCCCCCEEeCC
Q 047676 378 ESFYIYPNLTFIDLSHNNFYGEIS----SDWGRCPKLDSLDFSTNNITGNIP-------------SEIGYSSQLEVLDLS 440 (576)
Q Consensus 378 ~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~ 440 (576)
..+..+|+|+.+++++|.+..... ..+..|..|++|++.+|.+..... ......+.|+++...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 345567788888888887764333 234668899999999998763321 224567899999999
Q ss_pred CCccccc----CcccccCccCCceeeccccccccc----CCcccccCCCCCEeeCCCCcCccc----cchhccCCCCCCE
Q 047676 441 SNHIVGE----IPTELGKLSFFIKLILAQNQLSGQ----LSPKLGLLVQLEHLDLSSNRLSNS----IPESLGNLVKLHY 508 (576)
Q Consensus 441 ~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~~~~~~~----~~~~~~~l~~L~~ 508 (576)
.|++-.. ....|...+.|+.+.+..|.+... ....+.++++|+.||+..|.++.. +...++..++|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 9987533 234567778999999999987643 334677999999999999998743 3356777889999
Q ss_pred eeCCCCcCCCCccccc-----cCCCCCCEEeCCCCcCccc----CCccCcCCCCCceEeCcCCcc
Q 047676 509 LNLSNNHFSREIPIKL-----EELIHLSELDLSYNFLGRE----IPSQICIMQSLEKLNLSHNSL 564 (576)
Q Consensus 509 L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l 564 (576)
|++++|.+...+...| ...++|+.|.+.+|.++.. +...+...+.|+.|+|++|++
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 9999999976665444 3468999999999998642 333456689999999999998
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.21 E-value=6.7e-12 Score=133.82 Aligned_cols=199 Identities=27% Similarity=0.298 Sum_probs=120.2
Q ss_pred CEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCC--CcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEE
Q 047676 49 RVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQ--LFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTL 126 (576)
Q Consensus 49 ~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 126 (576)
.+|++++-++.+.... . -...+.|++|-+.++. +.....+.|..++.|++||+++|.-.+.+|+.++.+-+||+|
T Consensus 524 ~~rr~s~~~~~~~~~~-~--~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIA-G--SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchhhcc-C--CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 4566666665544222 1 1234478888888875 443444457788888888888876666788888888888888
Q ss_pred eCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCc--ccCCccccCCCccceeeccCCc
Q 047676 127 NLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLS--GSIPSEIGNLKFLSRTALSHNK 204 (576)
Q Consensus 127 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~ 204 (576)
+++++.+. .+|..+.++.+|.+|++..+......+.....+++|++|.+...... ......+..+++|+.+.+....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 88888888 88888888888888888887655555666777888888888765421 1222233445555555543322
Q ss_pred CCCcCCccccCCCCCc----EEEccCccccccCCccccCCCCCCEEEccCCCCc
Q 047676 205 LSGSIPHSLGNLSNLV----ILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLS 254 (576)
Q Consensus 205 ~~~~~~~~~~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 254 (576)
. .+...+..+..|. .+.+.++. ....+..+..+++|+.|.+.++.+.
T Consensus 680 ~--~~~e~l~~~~~L~~~~~~l~~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 680 V--LLLEDLLGMTRLRSLLQSLSIEGCS-KRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred h--HhHhhhhhhHHHHHHhHhhhhcccc-cceeecccccccCcceEEEEcCCCc
Confidence 2 0111122222222 22221111 1122334556667777777766654
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.1e-12 Score=119.17 Aligned_cols=138 Identities=21% Similarity=0.238 Sum_probs=82.5
Q ss_pred CCCCCcEEEccCCcccc-ccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccC-cccccCccCCc
Q 047676 382 IYPNLTFIDLSHNNFYG-EISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEI-PTELGKLSFFI 459 (576)
Q Consensus 382 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~ 459 (576)
.+++|+.|.++.|+++. .+......+|+|+.|++.+|...........-+..|++|+|++|.+.+.. ......++.|+
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 45677777777777652 12234456777777777777422222233345667777777777765322 12445667777
Q ss_pred eeecccccccccCCcc------cccCCCCCEeeCCCCcCcccc-chhccCCCCCCEeeCCCCcCCCC
Q 047676 460 KLILAQNQLSGQLSPK------LGLLVQLEHLDLSSNRLSNSI-PESLGNLVKLHYLNLSNNHFSRE 519 (576)
Q Consensus 460 ~L~l~~~~~~~~~~~~------~~~~~~L~~L~ls~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~ 519 (576)
.|+++.|++.+.-... ...+++|+.|+++.|++.+.- -..+..+++|+.|.+..|.++.+
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 7777777766542222 245677888888887775321 12344566777777777777544
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=7.9e-12 Score=116.52 Aligned_cols=208 Identities=26% Similarity=0.275 Sum_probs=130.3
Q ss_pred ccCCCCcEEEccCCcccccCC--CCCCCCCCcEEEccCccceee--cCccccCCCCCcEEEccCCccccccCc-ccCCCC
Q 047676 334 QNLVKLTKLLLGNNQFQGPIP--NLRNLTSLVRVRLNRNYLTGN--ISESFYIYPNLTFIDLSHNNFYGEISS-DWGRCP 408 (576)
Q Consensus 334 ~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~ 408 (576)
+++.+|+++.+.++.+..... ....+++++.|+++.|-+..+ +......+|+|+.|+++.|.+..-... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 567788888888887764432 366788888888888766542 233445678888888888776533222 223567
Q ss_pred CCCEEEccCCccccc-CCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccC-CcccccCCCCCEee
Q 047676 409 KLDSLDFSTNNITGN-IPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQL-SPKLGLLVQLEHLD 486 (576)
Q Consensus 409 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 486 (576)
.|+.|.+++|.++.. +-.....+|+|+.|++.+|............+..|++|+|++|.+.+.. ......++.|+.|.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 788888888877632 2233456778888888777532233334455667778888887765432 23445677777777
Q ss_pred CCCCcCcccc-chh-----ccCCCCCCEeeCCCCcCCCCcc-ccccCCCCCCEEeCCCCcCc
Q 047676 487 LSSNRLSNSI-PES-----LGNLVKLHYLNLSNNHFSREIP-IKLEELIHLSELDLSYNFLG 541 (576)
Q Consensus 487 ls~~~~~~~~-~~~-----~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~ 541 (576)
++.|.+.+.- |.. ...+++|+.|++..|+|.+-.. ..+..+.+|+.|.+..|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 7777766431 211 2446777777777777732111 23445566677777676664
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=1.3e-11 Score=109.30 Aligned_cols=129 Identities=33% Similarity=0.366 Sum_probs=85.7
Q ss_pred CCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeC
Q 047676 432 SQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNL 511 (576)
Q Consensus 432 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l 511 (576)
+.|+++|+++|.++ .+..+..-.|.++.|++++|.+... ..+..+++|++||+|+|.++.. ..+=..+-++++|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeeh
Confidence 45667777776665 3344555566777777777776644 2256677888888888877733 233344667788888
Q ss_pred CCCcCCCCccccccCCCCCCEEeCCCCcCcccC-CccCcCCCCCceEeCcCCcccc
Q 047676 512 SNNHFSREIPIKLEELIHLSELDLSYNFLGREI-PSQICIMQSLEKLNLSHNSLSG 566 (576)
Q Consensus 512 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~ 566 (576)
++|.|-. .+++..+-+|..||+++|+|...- -..+.++|-|+.+.+.+||+.+
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 8887732 256677778888888888774321 1357778888888888888763
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=3.2e-12 Score=115.83 Aligned_cols=210 Identities=20% Similarity=0.172 Sum_probs=108.3
Q ss_pred cCCCCCCCEEECCCCCCccc----CCccccCCCCCcEEECcCCcC---CCCCCc-------cccCCCCCCEEeCCCCcCC
Q 047676 69 FSSFPHLAYLDLWSNQLFGN----IPPQIGNISKLKYLDLSSNSF---FGAIPP-------QIGHLSYLKTLNLSKNKLS 134 (576)
Q Consensus 69 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~---~~~~~~-------~~~~l~~L~~L~l~~~~~~ 134 (576)
...+..++.|++|+|.+... +...+...++|+..++++..- ...+|. ++...++|++|+|+.|.+-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 44556677777777776432 233455666777777776421 112332 2345567777777777654
Q ss_pred CCCCcc----cCCCCCCCEEEccccccCcccCcc-------------cCCCCCCCEEEeecccCcccC----CccccCCC
Q 047676 135 GSIPLE----VGRLSSLNNLTLYANCLEGLIPHS-------------LGNLTNLAILYLYNNSLSGSI----PSEIGNLK 193 (576)
Q Consensus 135 ~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~ 193 (576)
...+.. ++.+..|++|.+.+|.+....... ...-++|+++...+|++.... ...|...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 333332 345677777777777654332222 233456777777766665322 22334455
Q ss_pred ccceeeccCCcCCCc----CCccccCCCCCcEEEccCccccccC----CccccCCCCCCEEEccCCCCcccCCccc----
Q 047676 194 FLSRTALSHNKLSGS----IPHSLGNLSNLVILFLDNNLLFGLI----PSELRNLKSLYFLELGNNKLSGPIPHFF---- 261 (576)
Q Consensus 194 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~l---- 261 (576)
.|+.+.+..|.|... +...+..+++|++|++.+|.++... ...+..++.|+++++++|.+.......+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 666666665554311 1223445566666666665544322 2233445555555555555433222221
Q ss_pred -CCCCCccEEEccCCccc
Q 047676 262 -GNLTNLGVLYIYNNLLS 278 (576)
Q Consensus 262 -~~~~~L~~L~l~~~~~~ 278 (576)
...|+|+++.+.+|.++
T Consensus 266 ~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEIT 283 (382)
T ss_pred hccCCCCceeccCcchhH
Confidence 12345555555555443
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=7.7e-11 Score=100.36 Aligned_cols=123 Identities=33% Similarity=0.294 Sum_probs=33.5
Q ss_pred CCCCEEeCCCCcccccCccccc-CccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEee
Q 047676 432 SQLEVLDLSSNHIVGEIPTELG-KLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLN 510 (576)
Q Consensus 432 ~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ 510 (576)
.++++|++.++.+..+ ..+. .+.+|+.|++++|.+... ..+..++.|++|++++|.+++..+.....+|+|++|+
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3445555555554422 1222 234455555555555433 2344556666666666666533222223456666666
Q ss_pred CCCCcCCCCcc-ccccCCCCCCEEeCCCCcCcccCC---ccCcCCCCCceEe
Q 047676 511 LSNNHFSREIP-IKLEELIHLSELDLSYNFLGREIP---SQICIMQSLEKLN 558 (576)
Q Consensus 511 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~ 558 (576)
+++|+|..... ..+..+++|+.|++.+|++...-- ..+..+|+|+.||
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 66666643222 334556666666666666643311 1244456666653
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.09 E-value=3.6e-11 Score=128.30 Aligned_cols=180 Identities=27% Similarity=0.324 Sum_probs=128.3
Q ss_pred CEEEEEcCCCCc-ccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEe
Q 047676 49 RVNSINLTNIGL-KGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLN 127 (576)
Q Consensus 49 ~i~~l~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 127 (576)
.+++|-+.++.. ...++...|..++.|++||+++|.-.+.+|..++.+.+||+|+++++.+. .+|..+.++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 688888888762 33444446899999999999999777789999999999999999999997 9999999999999999
Q ss_pred CCCCcCCCCCCcccCCCCCCCEEEccccccC--cccCcccCCCCCCCEEEeecccCcccCCccccCCCccc----eeecc
Q 047676 128 LSKNKLSGSIPLEVGRLSSLNNLTLYANCLE--GLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLS----RTALS 201 (576)
Q Consensus 128 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~ 201 (576)
+..+......|.....+.+||+|.+...... ......+.++.+|+.+....... .....+..+..|. .+.+.
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhc
Confidence 9998876566777788999999999876521 11223344555555555533322 1112223333333 23322
Q ss_pred CCcCCCcCCccccCCCCCcEEEccCcccccc
Q 047676 202 HNKLSGSIPHSLGNLSNLVILFLDNNLLFGL 232 (576)
Q Consensus 202 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 232 (576)
++... ..+..+..+.+|+.|.+.++.+.+.
T Consensus 703 ~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 703 GCSKR-TLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred ccccc-eeecccccccCcceEEEEcCCCchh
Confidence 33322 4455677889999999999887644
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=2e-10 Score=97.83 Aligned_cols=110 Identities=34% Similarity=0.355 Sum_probs=43.4
Q ss_pred ccCccCCceeecccccccccCCcccc-cCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccc-cCCCC
Q 047676 452 LGKLSFFIKLILAQNQLSGQLSPKLG-LLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKL-EELIH 529 (576)
Q Consensus 452 l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~ 529 (576)
+.+...+++|+++++.+... +.+. .+.+|+.|++++|.+... +.++.++.|++|++++|.|+... ..+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHHHH-TT
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccc-cchHHhCCc
Confidence 44556789999999999854 3344 578999999999999854 35788999999999999997543 344 46899
Q ss_pred CCEEeCCCCcCcccC-CccCcCCCCCceEeCcCCcccc
Q 047676 530 LSELDLSYNFLGREI-PSQICIMQSLEKLNLSHNSLSG 566 (576)
Q Consensus 530 L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~ 566 (576)
|++|++++|.+.... -..+..+++|+.|++.+||++.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 999999999996532 2457789999999999999974
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=4.3e-10 Score=112.61 Aligned_cols=197 Identities=43% Similarity=0.551 Sum_probs=144.1
Q ss_pred EEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCC-CCCEEeCCCCcCCCCCCcccCCCCCCCEEEcccc
Q 047676 77 YLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLS-YLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYAN 155 (576)
Q Consensus 77 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 155 (576)
.++++.+.+.... ..+..++.++.|++.++.+. .++.....+. +|+.|+++++.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 5777777663222 34556678888888888887 5666666664 8888889888887 66667888888899998888
Q ss_pred ccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCccccccCCc
Q 047676 156 CLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPS 235 (576)
Q Consensus 156 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 235 (576)
.+..+ +......+.|+.|+++++.+. ..+..+.....|+++.++++... ..+..+.++..+..+.+.++++... +.
T Consensus 174 ~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cc
Confidence 88766 333336788888888888887 44554455566888888888543 3555677778888888777776543 45
Q ss_pred cccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCccccccc
Q 047676 236 ELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIP 282 (576)
Q Consensus 236 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 282 (576)
.+..++.++.|++++|.+..... +....+++.++++++.+....+
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 57778889999999998875544 7778889999998888775444
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.99 E-value=8.9e-10 Score=110.38 Aligned_cols=197 Identities=37% Similarity=0.503 Sum_probs=89.1
Q ss_pred EEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCC-CCCcEEEccCCccccccCcccCCCCCCCEEEccCCc
Q 047676 341 KLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIY-PNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNN 419 (576)
Q Consensus 341 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 419 (576)
.+....+.+..........+.+..+++.++.++.+.. ..... ++|+.|++++|.+... +..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchhhh-hhhhhccccccccccCCch
Confidence 3455555443233333334555555655555553322 12222 2555555555555422 1234455555555555555
Q ss_pred ccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchh
Q 047676 420 ITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPES 499 (576)
Q Consensus 420 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~ 499 (576)
+. .++......+.|+.|++++|++. ..|........|+++.++++.+. ..+..+..+..+..+.+.++++.. .+..
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~ 250 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPES 250 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccch
Confidence 54 33333334555555555555554 22322233334555555555322 112233444444444455554442 1333
Q ss_pred ccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCC
Q 047676 500 LGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIP 545 (576)
Q Consensus 500 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 545 (576)
+..++++++|++++|.++.... +..+.+++.|+++++.++...+
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 4444455555555555543222 4445555555555555544433
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=2.5e-10 Score=101.41 Aligned_cols=127 Identities=35% Similarity=0.349 Sum_probs=55.1
Q ss_pred CCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeec
Q 047676 384 PNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLIL 463 (576)
Q Consensus 384 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 463 (576)
..|+++++++|.++ .+.....-.|+++.|+++.|.+... ..+..+++|+.||+++|.++. ....-.++-+++.|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeeh
Confidence 34455555555544 2223334445555555555555421 124445555555555554431 1122233444455555
Q ss_pred ccccccccCCcccccCCCCCEeeCCCCcCccccc-hhccCCCCCCEeeCCCCcC
Q 047676 464 AQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIP-ESLGNLVKLHYLNLSNNHF 516 (576)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 516 (576)
.+|.+.+. ..+.++.+|..||+++|.+..... ..++++|-|+.+.+.+|++
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 55444322 233444444555555554432211 2234444444444444444
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=3.5e-11 Score=115.89 Aligned_cols=189 Identities=29% Similarity=0.452 Sum_probs=108.1
Q ss_pred EEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCc
Q 047676 364 RVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNH 443 (576)
Q Consensus 364 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 443 (576)
..+++.|++.. ++..+..|..|+.+.+..|.+. .++..+..+..|++++++.|++. .+|..+..++ |+.|-+++|+
T Consensus 79 ~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 44555555542 2334444555666666655554 34555566666666666666665 4555555555 6666666666
Q ss_pred ccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCcccc
Q 047676 444 IVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIK 523 (576)
Q Consensus 444 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 523 (576)
++ .+|..+...+.|..|+.+.|.+. ..+..+.++.+|+.|.+..|.+.+ +|..+.. -.|..|+++.|+++ .+|..
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccCcee-ecchh
Confidence 65 55555556666666666666665 333445666666666666666653 3333433 34666666666664 56666
Q ss_pred ccCCCCCCEEeCCCCcCcccCCccCcC---CCCCceEeCcCC
Q 047676 524 LEELIHLSELDLSYNFLGREIPSQICI---MQSLEKLNLSHN 562 (576)
Q Consensus 524 ~~~l~~L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~l~~~ 562 (576)
|..+..|++|.|.+|++. ..|..++. ..-.|.|++.-|
T Consensus 230 fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 666666666666666663 33333322 233455666555
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.85 E-value=6.6e-09 Score=108.90 Aligned_cols=106 Identities=36% Similarity=0.594 Sum_probs=53.1
Q ss_pred CCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCC
Q 047676 434 LEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSN 513 (576)
Q Consensus 434 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~ 513 (576)
++.|+|++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44555555555555555555555555555555555444444445555555555555555544555555555555555555
Q ss_pred CcCCCCccccccCC-CCCCEEeCCCCc
Q 047676 514 NHFSREIPIKLEEL-IHLSELDLSYNF 539 (576)
Q Consensus 514 ~~~~~~~~~~~~~l-~~L~~L~l~~~~ 539 (576)
|++++.+|..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 55554554444332 234444555443
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=2e-09 Score=75.25 Aligned_cols=61 Identities=36% Similarity=0.440 Sum_probs=38.0
Q ss_pred CCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCcc
Q 047676 504 VKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSL 564 (576)
Q Consensus 504 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 564 (576)
|+|++|++++|+++...+..|.++++|++|++++|.+....+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666666666555445666666666666666666555555666666666666666654
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.83 E-value=1.4e-10 Score=111.84 Aligned_cols=177 Identities=31% Similarity=0.430 Sum_probs=129.8
Q ss_pred CCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCE
Q 047676 70 SSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNN 149 (576)
Q Consensus 70 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 149 (576)
..+..-...|++.|++. .+|..+..|..|..+.+..|.+- .+|..+.++..|.+|+++.|.+. .+|..+..|+ |+.
T Consensus 72 ~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred ccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 34555566788888775 66777788888888888888775 77788888888888888888887 7777766653 778
Q ss_pred EEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCccc
Q 047676 150 LTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLL 229 (576)
Q Consensus 150 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 229 (576)
|.+++|++..+ |..++...+|..|+.+.|.+. .++..+..+..|+.+.+..|.+. .+|..+. .-.|..|+++.|++
T Consensus 148 li~sNNkl~~l-p~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNki 223 (722)
T KOG0532|consen 148 LIVSNNKLTSL-PEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKI 223 (722)
T ss_pred EEEecCccccC-CcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCce
Confidence 88888877654 556677788888888888776 56666777777888887777776 5566566 33467778877777
Q ss_pred cccCCccccCCCCCCEEEccCCCCcc
Q 047676 230 FGLIPSELRNLKSLYFLELGNNKLSG 255 (576)
Q Consensus 230 ~~~~~~~l~~l~~L~~L~l~~~~~~~ 255 (576)
..+ |-.|.+++.|++|-+.+|.+..
T Consensus 224 s~i-Pv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 224 SYL-PVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eec-chhhhhhhhheeeeeccCCCCC
Confidence 644 4557777788888887777753
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=3.4e-09 Score=74.02 Aligned_cols=61 Identities=44% Similarity=0.560 Sum_probs=43.4
Q ss_pred CCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcC
Q 047676 480 VQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFL 540 (576)
Q Consensus 480 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 540 (576)
|+|++|++++|.+....+..|.++++|++|++++|++....+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777755556777777777777777777666666777777777777777754
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.72 E-value=1.5e-09 Score=108.73 Aligned_cols=223 Identities=32% Similarity=0.280 Sum_probs=104.3
Q ss_pred cCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEE
Q 047676 335 NLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLD 414 (576)
Q Consensus 335 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 414 (576)
.+.+|+.+++.+|.+......+..+++|+.|++++|.++.+ ..+..++.|+.|++.+|.+... ..+..+++|+.++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD 168 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence 34444444444444433222244455555555555555433 1233344455566666655432 2333456666666
Q ss_pred ccCCcccccCC-ccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCC--CCCEeeCCCCc
Q 047676 415 FSTNNITGNIP-SEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLV--QLEHLDLSSNR 491 (576)
Q Consensus 415 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~ls~~~ 491 (576)
+++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+.+..+.+...- .+..+. +|+.+++++++
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNR 243 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCc
Confidence 66666553322 1 34555666666666655322 12222333333345555444221 111122 25666666666
Q ss_pred CccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCccc---CCcc-CcCCCCCceEeCcCCccccc
Q 047676 492 LSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGRE---IPSQ-ICIMQSLEKLNLSHNSLSGV 567 (576)
Q Consensus 492 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~-l~~~~~L~~L~l~~~~l~~~ 567 (576)
+.. .+..+..++.+..|++.++++... ..+.....+..+....+.+... .... ....+.+..+.+.++++...
T Consensus 244 i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 244 ISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred ccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 552 223345556666666666666332 2344445555555555554311 1111 33455666666666665544
Q ss_pred cC
Q 047676 568 IP 569 (576)
Q Consensus 568 ~p 569 (576)
.|
T Consensus 321 ~~ 322 (414)
T KOG0531|consen 321 SS 322 (414)
T ss_pred cc
Confidence 43
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.60 E-value=4.3e-09 Score=105.46 Aligned_cols=195 Identities=32% Similarity=0.346 Sum_probs=90.0
Q ss_pred CCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEE
Q 047676 95 NISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAIL 174 (576)
Q Consensus 95 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 174 (576)
.+..++.+.++.+.+.. +-..+..+++|+.|++.+|.+. .+...+..+++|++|++++|.+..+ ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 34455555555555542 2223555666666666666655 2222245556666666666665544 224444556666
Q ss_pred EeecccCcccCCccccCCCccceeeccCCcCCCcCC-ccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCC
Q 047676 175 YLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIP-HSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKL 253 (576)
Q Consensus 175 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 253 (576)
++.+|.+.. ...+..++.|+.++++++.+....+ . ...+..++.+.+.++.+... .++..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 666665542 2333335555555555555542222 1 23445555555555554333 2222333333334444444
Q ss_pred cccCCcccCCCC--CccEEEccCCcccccccccccCCCCCCeEEcccccc
Q 047676 254 SGPIPHFFGNLT--NLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKL 301 (576)
Q Consensus 254 ~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 301 (576)
..... +..+. .|+.+++.++.+.. .+..+..+..+..+++.++++
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhccc
Confidence 32211 11111 14555555554442 112333444444445444444
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.4e-09 Score=96.69 Aligned_cols=176 Identities=23% Similarity=0.182 Sum_probs=78.9
Q ss_pred CCcEEEccCccceee-cCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCc-cccc-CCccccCCCCCCEE
Q 047676 361 SLVRVRLNRNYLTGN-ISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNN-ITGN-IPSEIGYSSQLEVL 437 (576)
Q Consensus 361 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L 437 (576)
.|+.++++...++.. ....+..|.+|+.|.+.|+.+.+.+...+..-.+|+.++++.|. +++. ..-.+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 355666665554431 12233445556666666555554444444445555566555543 2111 11123455555555
Q ss_pred eCCCCcccccCcc-cc-cCccCCceeeccccccc---ccCCcccccCCCCCEeeCCCCc-CccccchhccCCCCCCEeeC
Q 047676 438 DLSSNHIVGEIPT-EL-GKLSFFIKLILAQNQLS---GQLSPKLGLLVQLEHLDLSSNR-LSNSIPESLGNLVKLHYLNL 511 (576)
Q Consensus 438 ~l~~~~~~~~~~~-~l-~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~ls~~~-~~~~~~~~~~~l~~L~~L~l 511 (576)
+++-|........ .+ .--++|+.|+++|+.-. .....-..++++|.+||+|.|- ++......|-.++.|++|++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 5555543221110 00 11134555555555311 0111122355555555555554 33322333444555555555
Q ss_pred CCCcCCCCcccc---ccCCCCCCEEeCCCC
Q 047676 512 SNNHFSREIPIK---LEELIHLSELDLSYN 538 (576)
Q Consensus 512 ~~~~~~~~~~~~---~~~l~~L~~L~l~~~ 538 (576)
+.|.. ++|.. +...++|.+|++.+|
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 55543 22322 233455555555555
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.51 E-value=2.4e-09 Score=106.43 Aligned_cols=179 Identities=27% Similarity=0.334 Sum_probs=124.0
Q ss_pred CccccCCCCCcEEEccCCccccccCcccCCC-CCCCEEEccCCccc----------ccCCccccCCCCCCEEeCCCCccc
Q 047676 377 SESFYIYPNLTFIDLSHNNFYGEISSDWGRC-PKLDSLDFSTNNIT----------GNIPSEIGYSSQLEVLDLSSNHIV 445 (576)
Q Consensus 377 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~----------~~~~~~~~~~~~L~~L~l~~~~~~ 445 (576)
+-.+..+.+|+.|.+.++.+... ..+..+ ..|++|...+ .+. +.+...+.+ .+|.+.+++.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~W-n~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVW-NKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhh-hhHhhhhcchhhHH
Confidence 33455678999999999887642 111111 2344443222 111 111111111 24777788888775
Q ss_pred ccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCcccccc
Q 047676 446 GEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLE 525 (576)
Q Consensus 446 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 525 (576)
.+..++.-++.|+.|++++|++.+. +.+..++.|++|||++|.+....--...+|. |+.|.+++|.++.. ..+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHH
Confidence 5666788889999999999999876 3678899999999999998843333344555 99999999999644 4678
Q ss_pred CCCCCCEEeCCCCcCcccC-CccCcCCCCCceEeCcCCccc
Q 047676 526 ELIHLSELDLSYNFLGREI-PSQICIMQSLEKLNLSHNSLS 565 (576)
Q Consensus 526 ~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~ 565 (576)
++.+|+.||+++|-+.+.- ..-+..+.+|+.|+|.|||+.
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8999999999999876531 123667889999999999985
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.43 E-value=3e-09 Score=99.09 Aligned_cols=253 Identities=20% Similarity=0.074 Sum_probs=122.5
Q ss_pred CCCCCCeEEcccc-cccccCCccc-cCCCCCcEEEcccCcc-cccCch-hcccCCCCcEEEccCCccccc---CCCCCCC
Q 047676 287 NLKFLSELNLGFN-KLSNSIPVSL-SNLTNLVFLSFYQNSL-SGAIPK-EYQNLVKLTKLLLGNNQFQGP---IPNLRNL 359 (576)
Q Consensus 287 ~l~~L~~L~L~~~-~~~~~~~~~~-~~l~~L~~L~l~~~~~-~~~~~~-~~~~l~~L~~L~l~~~~~~~~---~~~~~~~ 359 (576)
.+|+++.|.+.++ .+++.....+ ..|++++++++..|.. ++.... ....+++|++++++.|+.... -+..+++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 3455555555544 2222222222 2456666666655432 222111 224566666666666654211 1224444
Q ss_pred CCCcEEEccCcccee--ecCccccCCCCCcEEEccCCcc-cccc-CcccCCCCCCCEEEccCCcccccC--CccccCCCC
Q 047676 360 TSLVRVRLNRNYLTG--NISESFYIYPNLTFIDLSHNNF-YGEI-SSDWGRCPKLDSLDFSTNNITGNI--PSEIGYSSQ 433 (576)
Q Consensus 360 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~-~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~ 433 (576)
..++.+...+|.-.. .+...-..++.+..+++..|.. ++.. ...-.+|..||.++.++|...+.. ...-.++++
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 455555444432110 1111113345555565555432 2221 122245677777777766443221 112245677
Q ss_pred CCEEeCCCCc-ccccCcccc-cCccCCceeeccccccccc--CCcccccCCCCCEeeCCCCc-Ccccc----chhccCCC
Q 047676 434 LEVLDLSSNH-IVGEIPTEL-GKLSFFIKLILAQNQLSGQ--LSPKLGLLVQLEHLDLSSNR-LSNSI----PESLGNLV 504 (576)
Q Consensus 434 L~~L~l~~~~-~~~~~~~~l-~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ls~~~-~~~~~----~~~~~~l~ 504 (576)
|+++.+++|+ +++.....+ .+++.|+.+++.+|..... +...-.+++.|+.|.++.|. +++.. ...-..+.
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 7777777775 222222222 3456677777777754322 12222466777777777776 34321 11223345
Q ss_pred CCCEeeCCCCcC-CCCccccccCCCCCCEEeCCCCc
Q 047676 505 KLHYLNLSNNHF-SREIPIKLEELIHLSELDLSYNF 539 (576)
Q Consensus 505 ~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~ 539 (576)
.|+.+.+++++. ++...+.+..+++|+.+++.+|+
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 677777777664 23333445556677777777773
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=6.6e-08 Score=86.24 Aligned_cols=200 Identities=21% Similarity=0.115 Sum_probs=108.9
Q ss_pred CCCCcEEEcccCccccc--CchhcccCCCCcEEEccCCcccccCCCCC-CCCCCcEEEccCccceeecCc-cccCCCCCc
Q 047676 312 LTNLVFLSFYQNSLSGA--IPKEYQNLVKLTKLLLGNNQFQGPIPNLR-NLTSLVRVRLNRNYLTGNISE-SFYIYPNLT 387 (576)
Q Consensus 312 l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~ 387 (576)
+..++++++.+|.+++. +...+.++|.|+.|+++.|.+...+..+. ...+|+.+.+.+..+...... ....+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 34445555555544321 12234556666666666666654444442 445666666666555432222 234566777
Q ss_pred EEEccCCccccc--cCcccC-CCCCCCEEEccCCccccc--CCccccCCCCCCEEeCCCCcccccC-cccccCccCCcee
Q 047676 388 FIDLSHNNFYGE--ISSDWG-RCPKLDSLDFSTNNITGN--IPSEIGYSSQLEVLDLSSNHIVGEI-PTELGKLSFFIKL 461 (576)
Q Consensus 388 ~L~l~~~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L 461 (576)
+|+++.|..... ...... --+.+.+++...|..... .-...+..|++..+.+..|++.+.. ...+..++.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 777766633211 111111 123455555555532211 1111234677777778777765443 3356667777788
Q ss_pred eccccccccc-CCcccccCCCCCEeeCCCCcCccccch------hccCCCCCCEeeC
Q 047676 462 ILAQNQLSGQ-LSPKLGLLVQLEHLDLSSNRLSNSIPE------SLGNLVKLHYLNL 511 (576)
Q Consensus 462 ~l~~~~~~~~-~~~~~~~~~~L~~L~ls~~~~~~~~~~------~~~~l~~L~~L~l 511 (576)
+++.+++.+. ....+.++++|+.|.++++++.+.... .+..+++++.|+=
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 8888877653 334567788888888888887654321 2455677777763
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=4.1e-09 Score=93.75 Aligned_cols=176 Identities=23% Similarity=0.206 Sum_probs=82.8
Q ss_pred CCcEEEccCCccccc-cCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccC--cccccCccCCcee
Q 047676 385 NLTFIDLSHNNFYGE-ISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEI--PTELGKLSFFIKL 461 (576)
Q Consensus 385 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L 461 (576)
.|+.+++++..++.. ....+..|.+|+.|.+.+.++.+.+...+....+|+.++++.|.-.... -..+..|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 455566665555421 1223445666666666666655555455555566666666655321111 1134555666666
Q ss_pred ecccccccccCCc-ccc-cCCCCCEeeCCCCc--Cccc-cchhccCCCCCCEeeCCCCcCCCC-ccccccCCCCCCEEeC
Q 047676 462 ILAQNQLSGQLSP-KLG-LLVQLEHLDLSSNR--LSNS-IPESLGNLVKLHYLNLSNNHFSRE-IPIKLEELIHLSELDL 535 (576)
Q Consensus 462 ~l~~~~~~~~~~~-~~~-~~~~L~~L~ls~~~--~~~~-~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l 535 (576)
+++-|.+...... .+. --++|+.|+++|+. +... +..-...||+|..|+|++|..... .-..|-+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 6666654432111 111 12455556666554 1111 111223456666666665543211 1123445566666666
Q ss_pred CCCcCcccCCc---cCcCCCCCceEeCcCC
Q 047676 536 SYNFLGREIPS---QICIMQSLEKLNLSHN 562 (576)
Q Consensus 536 ~~~~~~~~~~~---~l~~~~~L~~L~l~~~ 562 (576)
+.|... +|+ .+...|+|.+|++.||
T Consensus 346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 666321 222 2344556666665555
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=8.5e-08 Score=85.54 Aligned_cols=199 Identities=17% Similarity=0.145 Sum_probs=109.3
Q ss_pred CCCCcEEEccCccceee--cCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCccccc-CCccccCCCCCC
Q 047676 359 LTSLVRVRLNRNYLTGN--ISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGN-IPSEIGYSSQLE 435 (576)
Q Consensus 359 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~ 435 (576)
++.++.+++.+|.+.++ +...+.++|.|+.|+++.|++...+...-....+|+.|-+.+..+.-. ....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 44555566666655542 223345667777777776666533221112345666666666555422 223345666677
Q ss_pred EEeCCCCccccc--CcccccC-ccCCceeecccccccc--cCCcccccCCCCCEeeCCCCcCcccc-chhccCCCCCCEe
Q 047676 436 VLDLSSNHIVGE--IPTELGK-LSFFIKLILAQNQLSG--QLSPKLGLLVQLEHLDLSSNRLSNSI-PESLGNLVKLHYL 509 (576)
Q Consensus 436 ~L~l~~~~~~~~--~~~~l~~-l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~ls~~~~~~~~-~~~~~~l~~L~~L 509 (576)
+|+++.|..... .....+. -+.++.+...+|.... ........+|++..+.+..|++-+.. ...++.+|.+-.|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 777776633211 1111111 1244455555553221 11112235678888888888765432 2445667777888
Q ss_pred eCCCCcCCCCcc--ccccCCCCCCEEeCCCCcCcccCCc------cCcCCCCCceEe
Q 047676 510 NLSNNHFSREIP--IKLEELIHLSELDLSYNFLGREIPS------QICIMQSLEKLN 558 (576)
Q Consensus 510 ~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~------~l~~~~~L~~L~ 558 (576)
+|+.++|- ... .++.++++|..|.++.+++.+.+.. -++.+++++.|+
T Consensus 230 nL~~~~id-swasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 230 NLGANNID-SWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhcccccc-cHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 88888883 322 4567788888899988888665332 144466666643
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=2.6e-08 Score=78.21 Aligned_cols=140 Identities=24% Similarity=0.246 Sum_probs=91.5
Q ss_pred CCCEEeCCCCccccc--CcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEee
Q 047676 433 QLEVLDLSSNHIVGE--IPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLN 510 (576)
Q Consensus 433 ~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ 510 (576)
.+..++++.|++... .+..+.+...|+.+++++|.+.+.......+++..+.|++++|.++ .+|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 344566666655311 1223344455666677777766554444456678888888888888 4565688888888888
Q ss_pred CCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCccccccCcccccc
Q 047676 511 LSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPRCFEEM 575 (576)
Q Consensus 511 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~~~~~ 575 (576)
++.|++. ..|..+..+.++-.|+..+|.+ ..+|..+....+.....+.++++.+.-|...+.+
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~-~eid~dl~~s~~~al~~lgnepl~~~~~~klqa~ 169 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENAR-AEIDVDLFYSSLPALIKLGNEPLGDETKKKLQAL 169 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCcc-ccCcHHHhccccHHHHHhcCCcccccCccccccc
Confidence 8888885 4455566688888888888877 3445444444444455567778888888776655
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.30 E-value=1.4e-08 Score=94.69 Aligned_cols=275 Identities=20% Similarity=0.088 Sum_probs=178.4
Q ss_pred CCCCeEEcccccccc-c-CCccccCCCCCcEEEcccCcccc-cCc-hhcccCCCCcEEEccCCccccc--CC-CCCCCCC
Q 047676 289 KFLSELNLGFNKLSN-S-IPVSLSNLTNLVFLSFYQNSLSG-AIP-KEYQNLVKLTKLLLGNNQFQGP--IP-NLRNLTS 361 (576)
Q Consensus 289 ~~L~~L~L~~~~~~~-~-~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~~~l~~L~~L~l~~~~~~~~--~~-~~~~~~~ 361 (576)
..|+.+.+.+++-.. . .-.....+|++++|.+.+|.... ... ..-..+++|+++++..|..... +. ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 356777777764321 1 11233578999999999987432 111 1225688999999988654321 11 2457889
Q ss_pred CcEEEccCccc-ee-ecCccccCCCCCcEEEccCCccccc--cCcccCCCCCCCEEEccCCcccccCC--ccccCCCCCC
Q 047676 362 LVRVRLNRNYL-TG-NISESFYIYPNLTFIDLSHNNFYGE--ISSDWGRCPKLDSLDFSTNNITGNIP--SEIGYSSQLE 435 (576)
Q Consensus 362 L~~L~l~~~~~-~~-~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~ 435 (576)
|++++++.|.- .+ .+...+.++..++.+...||.-... +...-.+++.+.++++..|....... ..-.++..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 99999988753 22 2233445677788887776532211 12223567777888877775432211 2235688999
Q ss_pred EEeCCCCcccccC-ccc-ccCccCCceeecccccc-cccCCccc-ccCCCCCEeeCCCCcCc-cc-cchhccCCCCCCEe
Q 047676 436 VLDLSSNHIVGEI-PTE-LGKLSFFIKLILAQNQL-SGQLSPKL-GLLVQLEHLDLSSNRLS-NS-IPESLGNLVKLHYL 509 (576)
Q Consensus 436 ~L~l~~~~~~~~~-~~~-l~~l~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~ls~~~~~-~~-~~~~~~~l~~L~~L 509 (576)
.++.+++...+.. -.. -.++.+|+.+.+.+|+. ++.....+ .+++.|+.+++.+|... +. +...-.+|+.|+.|
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 9999988543222 122 24678999999999973 33322222 46789999999998843 22 34445679999999
Q ss_pred eCCCCcC-CCCc----cccccCCCCCCEEeCCCCcC-cccCCccCcCCCCCceEeCcCCc
Q 047676 510 NLSNNHF-SREI----PIKLEELIHLSELDLSYNFL-GREIPSQICIMQSLEKLNLSHNS 563 (576)
Q Consensus 510 ~l~~~~~-~~~~----~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~ 563 (576)
.++.|.. ++.+ ...-.++..|+.+.+++|+. ++...+.+..+++|+++++.+|.
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 9998875 3331 12224568899999999976 44455678889999999999994
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=1.1e-08 Score=101.86 Aligned_cols=106 Identities=31% Similarity=0.267 Sum_probs=42.1
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEe
Q 047676 406 RCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHL 485 (576)
Q Consensus 406 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 485 (576)
-++.|+.|+++.|+.... +.+..+++|+.|||+.|.+...---...++. |..|.+++|.+... ..+.++.+|+.|
T Consensus 185 ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~L 259 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGL 259 (1096)
T ss_pred HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhcc
Confidence 344444444444444322 1334444444444444443311111122222 44444444444322 233444455555
Q ss_pred eCCCCcCccccc-hhccCCCCCCEeeCCCCcC
Q 047676 486 DLSSNRLSNSIP-ESLGNLVKLHYLNLSNNHF 516 (576)
Q Consensus 486 ~ls~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 516 (576)
|+++|-+.+.-. ..+..+..|+.|+|.+|++
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 555544332100 1122334445555555544
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.19 E-value=9.5e-08 Score=84.09 Aligned_cols=91 Identities=21% Similarity=0.250 Sum_probs=56.4
Q ss_pred CCCCCCCEEECCCCCCcccCCc----cccCCCCCcEEECcCCcCC---CCC-------CccccCCCCCCEEeCCCCcCCC
Q 047676 70 SSFPHLAYLDLWSNQLFGNIPP----QIGNISKLKYLDLSSNSFF---GAI-------PPQIGHLSYLKTLNLSKNKLSG 135 (576)
Q Consensus 70 ~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~---~~~-------~~~~~~l~~L~~L~l~~~~~~~ 135 (576)
.-+..+..++||+|.|...... .+.+-++|++.++++-... ..+ ..++-++|+|+..+++.|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3467888889999888654333 3445567888887764221 112 2234467778888887777654
Q ss_pred CCCcc----cCCCCCCCEEEccccccCcc
Q 047676 136 SIPLE----VGRLSSLNNLTLYANCLEGL 160 (576)
Q Consensus 136 ~~~~~----~~~l~~L~~L~l~~~~~~~~ 160 (576)
..|.. ++.-+.|.||.+++|.+..+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 44433 45566777777777765443
No 53
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.06 E-value=5.7e-06 Score=52.50 Aligned_cols=41 Identities=39% Similarity=0.898 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCccceeeeC
Q 047676 2 EESHALLRWKTSLQNHNNGSSLSSWTVNNVTKIGPCAWVGIHCN 45 (576)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 45 (576)
+|+++|++||.++..++ .....+|+.+. ..++|.|.||.|+
T Consensus 3 ~d~~aLl~~k~~l~~~~-~~~l~~W~~~~--~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 3 QDRQALLAFKKSLNNDP-SGVLSSWNPSS--DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHCTT-SC--CCCTT--TT----S-CCCSTTEEE-
T ss_pred HHHHHHHHHHHhccccc-CcccccCCCcC--CCCCeeeccEEeC
Confidence 58999999999999754 67899998111 3799999999995
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.03 E-value=2.9e-05 Score=74.89 Aligned_cols=138 Identities=15% Similarity=0.127 Sum_probs=85.5
Q ss_pred ccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCc
Q 047676 380 FYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFI 459 (576)
Q Consensus 380 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 459 (576)
+..++.++.|++++|.+... + .-.++|+.|.+.+|.....+|..+ +++|+.|++++|.....+| .+|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccc
Confidence 34468888999998876533 2 123468999998876655666544 4688899998884322333 3567
Q ss_pred eeecccccccccCCcccccC-CCCCEeeCCCCc-Ccc-ccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCC
Q 047676 460 KLILAQNQLSGQLSPKLGLL-VQLEHLDLSSNR-LSN-SIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLS 536 (576)
Q Consensus 460 ~L~l~~~~~~~~~~~~~~~~-~~L~~L~ls~~~-~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 536 (576)
.|++.++.... +..+ ++|+.|.+.++. ... ..+..++ ++|++|++++|... ..|..++ .+|+.|+++
T Consensus 116 ~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCcc-----cccCcchHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 77776544331 2222 467788775432 211 1122222 68999999888864 3444444 588888888
Q ss_pred CCc
Q 047676 537 YNF 539 (576)
Q Consensus 537 ~~~ 539 (576)
.+.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 763
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.96 E-value=1.9e-05 Score=65.07 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=55.4
Q ss_pred cCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCC
Q 047676 64 LHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGR 143 (576)
Q Consensus 64 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 143 (576)
++..+|.++++|+.+.+.. .+...-..+|..+.+|+.+.+.++ +.......|.+++.|+.+.+.+ .+.......|..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 3455777777777777764 344444566777777777777664 4434445566666777777755 333234445566
Q ss_pred CCCCCEEEccccccCcccCcccCCCCCCCEEEeec
Q 047676 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYN 178 (576)
Q Consensus 144 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 178 (576)
+++|+.+.+..+ +..+....|.++ +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 677777776553 444555566665 666666543
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.93 E-value=2.2e-05 Score=66.55 Aligned_cols=104 Identities=23% Similarity=0.249 Sum_probs=62.5
Q ss_pred CCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCccc-CcccCCCCCCCEEE
Q 047676 97 SKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLI-PHSLGNLTNLAILY 175 (576)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~ 175 (576)
.+...+|+++|.+... ..|.+++.|.+|.+.+|.++.+.|.--..+++|+.|.+.+|++..+. -..+..||+|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3456677777766422 34666777777777777777555544455667777777777665442 24466777777777
Q ss_pred eecccCcccCCc---cccCCCccceeeccC
Q 047676 176 LYNNSLSGSIPS---EIGNLKFLSRTALSH 202 (576)
Q Consensus 176 l~~~~~~~~~~~---~~~~l~~L~~L~l~~ 202 (576)
+-+|.++..... .+..+++|+.|++.+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 777766532211 234445555555443
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.92 E-value=3.8e-05 Score=63.30 Aligned_cols=105 Identities=15% Similarity=0.270 Sum_probs=33.0
Q ss_pred ccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCC
Q 047676 403 DWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQL 482 (576)
Q Consensus 403 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 482 (576)
.|.+|++|+.+.+.. .+.......|.++++|+.+.+.++ +.......|..+++++.+.+.+ .+.......+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344444444444432 222222333444444444444432 2222233344444444444433 2222222333344444
Q ss_pred CEeeCCCCcCccccchhccCCCCCCEeeCC
Q 047676 483 EHLDLSSNRLSNSIPESLGNLVKLHYLNLS 512 (576)
Q Consensus 483 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~ 512 (576)
+.+++..+ +.......|.++ +|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 44444332 222223334443 44444444
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=4.5e-05 Score=73.65 Aligned_cols=160 Identities=13% Similarity=0.102 Sum_probs=97.6
Q ss_pred CCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCC
Q 047676 356 LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLE 435 (576)
Q Consensus 356 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 435 (576)
+..+..++.|++++|.++... ...++|+.|.+++|......+..+ .++|++|++++|.....+ +++|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL------P~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL------PESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc------ccccc
Confidence 445688999999999777553 233579999999876544444433 468999999998433233 34688
Q ss_pred EEeCCCCcccccCcccccCc-cCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCC
Q 047676 436 VLDLSSNHIVGEIPTELGKL-SFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNN 514 (576)
Q Consensus 436 ~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~ 514 (576)
.|++.++.... +..+ ++|+.|.+.++.........-.-.++|++|++++|... ..|..++ .+|+.|+++.+
T Consensus 116 ~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 116 SLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eEEeCCCCCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 88887654321 1222 35777777553311110000012368999999999866 4454455 68999999876
Q ss_pred cCC--CCccccccCCCCCCEEeCCCC
Q 047676 515 HFS--REIPIKLEELIHLSELDLSYN 538 (576)
Q Consensus 515 ~~~--~~~~~~~~~l~~L~~L~l~~~ 538 (576)
... ......+. +++ .|++.+|
T Consensus 188 ~~~sLeI~~~sLP--~nl-~L~f~n~ 210 (426)
T PRK15386 188 QKTTWNISFEGFP--DGL-DIDLQNS 210 (426)
T ss_pred ccccccCcccccc--ccc-Eechhhh
Confidence 421 11222333 455 7777777
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1e-05 Score=51.36 Aligned_cols=36 Identities=44% Similarity=0.679 Sum_probs=15.5
Q ss_pred CCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCccc
Q 047676 529 HLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLS 565 (576)
Q Consensus 529 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 565 (576)
+|++|++++|++.+ +|..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34444444444432 2333444445555555555444
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.79 E-value=5.1e-06 Score=73.48 Aligned_cols=185 Identities=23% Similarity=0.196 Sum_probs=101.9
Q ss_pred cccCCCCcEEEccCCcccccCCC-----CCCCCCCcEEEccCccceeecCcc-------------ccCCCCCcEEEccCC
Q 047676 333 YQNLVKLTKLLLGNNQFQGPIPN-----LRNLTSLVRVRLNRNYLTGNISES-------------FYIYPNLTFIDLSHN 394 (576)
Q Consensus 333 ~~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~ 394 (576)
+..||+|+.+++++|.+....+. +.+...|++|.+.+|.+..+.... ...-|.|+......|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 34455555555555555433222 344555556666555443322211 123467777777776
Q ss_pred ccccc----cCcccCCCCCCCEEEccCCcccccC-----CccccCCCCCCEEeCCCCcccccCc----ccccCccCCcee
Q 047676 395 NFYGE----ISSDWGRCPKLDSLDFSTNNITGNI-----PSEIGYSSQLEVLDLSSNHIVGEIP----TELGKLSFFIKL 461 (576)
Q Consensus 395 ~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L 461 (576)
.+.+- +...+..-.+|+.+.+..|.|.... ...+.++.+|+.||+.+|-++.... ..++.-+.|++|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 65422 1122333367888888888776432 1234678889999998887753322 233444567888
Q ss_pred ecccccccccCCccc------ccCCCCCEeeCCCCcCcccc------chhc-cCCCCCCEeeCCCCcCC
Q 047676 462 ILAQNQLSGQLSPKL------GLLVQLEHLDLSSNRLSNSI------PESL-GNLVKLHYLNLSNNHFS 517 (576)
Q Consensus 462 ~l~~~~~~~~~~~~~------~~~~~L~~L~ls~~~~~~~~------~~~~-~~l~~L~~L~l~~~~~~ 517 (576)
.+.+|-+.......+ ...|+|..|...+|.+.+.. +... ..+|-|..|.+.+|.+.
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 888887664332221 14567777777777654321 1111 23566666667777764
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.76 E-value=1.8e-06 Score=89.40 Aligned_cols=83 Identities=24% Similarity=0.236 Sum_probs=41.0
Q ss_pred CCCCCcEEEccCcc-ceeecCcccc-CCCCCcEEEccCCc-cccc-cCcccCCCCCCCEEEccCCccccc--CCccccCC
Q 047676 358 NLTSLVRVRLNRNY-LTGNISESFY-IYPNLTFIDLSHNN-FYGE-ISSDWGRCPKLDSLDFSTNNITGN--IPSEIGYS 431 (576)
Q Consensus 358 ~~~~L~~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~ 431 (576)
.++.|+.+++..+. +++.....+. .|++|+.|.+.+|. +++. +......|++|++|++++|..... +.....++
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 34555555555554 3333222222 26677777666555 3322 223345567777777776655311 22223445
Q ss_pred CCCCEEeCC
Q 047676 432 SQLEVLDLS 440 (576)
Q Consensus 432 ~~L~~L~l~ 440 (576)
++++.+.+.
T Consensus 321 ~~l~~l~~~ 329 (482)
T KOG1947|consen 321 PNLRELKLL 329 (482)
T ss_pred cchhhhhhh
Confidence 555555443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.74 E-value=7.1e-05 Score=63.53 Aligned_cols=85 Identities=25% Similarity=0.235 Sum_probs=57.6
Q ss_pred CCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCccc-CCccccCCCcccee
Q 047676 120 LSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGS-IPSEIGNLKFLSRT 198 (576)
Q Consensus 120 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L 198 (576)
......+++++|.+. ....|..++.|.+|.+++|.+..+.|..-..+++|.+|.+.+|.+... ....+..++.|++|
T Consensus 41 ~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 345677888888775 233567788888888888888888776666778888888888876521 12334455666666
Q ss_pred eccCCcCC
Q 047676 199 ALSHNKLS 206 (576)
Q Consensus 199 ~l~~~~~~ 206 (576)
.+-+|.++
T Consensus 119 tll~Npv~ 126 (233)
T KOG1644|consen 119 TLLGNPVE 126 (233)
T ss_pred eecCCchh
Confidence 66555544
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=3.4e-05 Score=49.00 Aligned_cols=36 Identities=47% Similarity=0.735 Sum_probs=16.5
Q ss_pred CCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCC
Q 047676 98 KLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLS 134 (576)
Q Consensus 98 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 134 (576)
+|++|++++|.+. .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555554 33333455555555555555444
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=1.1e-05 Score=84.68 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=18.6
Q ss_pred cCCCCCEeeCCCCcCccccc-hhccCCCCCCEeeCCC
Q 047676 478 LLVQLEHLDLSSNRLSNSIP-ESLGNLVKLHYLNLSN 513 (576)
Q Consensus 478 ~~~~L~~L~ls~~~~~~~~~-~~~~~l~~L~~L~l~~ 513 (576)
.+|.|+.||.|++.+.+..- ..+..-|+|+.+.+-+
T Consensus 248 ~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred cCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 46677777777666654322 2233345555444433
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.60 E-value=3.6e-06 Score=66.44 Aligned_cols=138 Identities=24% Similarity=0.218 Sum_probs=90.9
Q ss_pred CCCEEEccCCccccc--CCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEee
Q 047676 409 KLDSLDFSTNNITGN--IPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLD 486 (576)
Q Consensus 409 ~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 486 (576)
.+-.++++.|++... .+..+.....|+.+++++|.+.+.-+..-.+++.++.+++.+|.+.+. +..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcc
Confidence 456677888877521 233455667788889999988744333344567889999999988754 44488899999999
Q ss_pred CCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCc
Q 047676 487 LSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQIC 549 (576)
Q Consensus 487 ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 549 (576)
++.|++. ..|..+..+.++-.|+..+|.+. .++..+-.-+..-..++.++++.+.-+..+.
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence 9999988 55555555888888888888885 4443322222222334455577655444433
No 66
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=2.4e-05 Score=82.18 Aligned_cols=131 Identities=21% Similarity=0.208 Sum_probs=74.5
Q ss_pred CCCCCCEEEccCCcccc-cCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccc-cCCcccccCCCCC
Q 047676 406 RCPKLDSLDFSTNNITG-NIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSG-QLSPKLGLLVQLE 483 (576)
Q Consensus 406 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~ 483 (576)
-+|+|++|.+.+-.+.. .+...+.++|+|..||++++.++.. ..++.+++|+.|.+.+-.+.. .....+-.+++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 35666666665544321 1233445666666666666666433 455666666666666655543 1122344677888
Q ss_pred EeeCCCCcCcccc------chhccCCCCCCEeeCCCCcCCCCccccc-cCCCCCCEEeCCCC
Q 047676 484 HLDLSSNRLSNSI------PESLGNLVKLHYLNLSNNHFSREIPIKL-EELIHLSELDLSYN 538 (576)
Q Consensus 484 ~L~ls~~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~ 538 (576)
.||+|........ -+.-..+|.|+.|+.+++.+.+..-+.+ ..-++|+.+-+-+|
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 8888876644221 1233447888888888888765544433 33456666555444
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=6.2e-06 Score=73.24 Aligned_cols=100 Identities=26% Similarity=0.168 Sum_probs=61.1
Q ss_pred ccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCcc-ccccCCCCCCEE
Q 047676 455 LSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIP-IKLEELIHLSEL 533 (576)
Q Consensus 455 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L 533 (576)
+.+.+.|++-||+++++ ..+.+++.|++|.||-|+++... .+..|++|++|+|+.|.|..... .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34556667777776654 33456777777777777776442 36677777777777777743222 235667777777
Q ss_pred eCCCCcCcccCCc-----cCcCCCCCceEe
Q 047676 534 DLSYNFLGREIPS-----QICIMQSLEKLN 558 (576)
Q Consensus 534 ~l~~~~~~~~~~~-----~l~~~~~L~~L~ 558 (576)
-|..|+=.+..+. .+..+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777765443332 244466666653
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.26 E-value=0.00011 Score=65.16 Aligned_cols=101 Identities=26% Similarity=0.224 Sum_probs=52.8
Q ss_pred ccCCceeecccccccccCCcccccCCCCCEeeCCCC--cCccccchhccCCCCCCEeeCCCCcCCCCc-cccccCCCCCC
Q 047676 455 LSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSN--RLSNSIPESLGNLVKLHYLNLSNNHFSREI-PIKLEELIHLS 531 (576)
Q Consensus 455 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~ 531 (576)
+..|+.+.+.++.+++. ..+..+++|+.|.++.| .+...++.....+|+|++|++++|+|.... -..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 34455555555555433 34455666667777666 444344444455577777777777664210 01234455666
Q ss_pred EEeCCCCcCcccCC---ccCcCCCCCceE
Q 047676 532 ELDLSYNFLGREIP---SQICIMQSLEKL 557 (576)
Q Consensus 532 ~L~l~~~~~~~~~~---~~l~~~~~L~~L 557 (576)
.|++.+|..+..-- ..|.-+++|+.|
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~L 148 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYL 148 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccc
Confidence 67777775543111 123345666664
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=1.4e-05 Score=71.05 Aligned_cols=100 Identities=24% Similarity=0.167 Sum_probs=69.3
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeeccccccccc-CCcccccCCCCCEe
Q 047676 407 CPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQ-LSPKLGLLVQLEHL 485 (576)
Q Consensus 407 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L 485 (576)
+.+.++|++.+|.+.++ +.+..++.|++|.|+-|+++.. ..+..|++|++|+|+.|.|.+. -...+.++++|++|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45667788888877643 3456788888888888887644 3477888888888888877653 12345677888888
Q ss_pred eCCCCcCccccc-----hhccCCCCCCEee
Q 047676 486 DLSSNRLSNSIP-----ESLGNLVKLHYLN 510 (576)
Q Consensus 486 ~ls~~~~~~~~~-----~~~~~l~~L~~L~ 510 (576)
+|..|+-.+..+ ..+.-+|+|+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888887554433 2345567777765
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.14 E-value=2.8e-05 Score=80.51 Aligned_cols=12 Identities=25% Similarity=0.050 Sum_probs=6.3
Q ss_pred CCCCCEEEccCC
Q 047676 240 LKSLYFLELGNN 251 (576)
Q Consensus 240 l~~L~~L~l~~~ 251 (576)
++.|+.+.+..+
T Consensus 187 ~~~L~~l~l~~~ 198 (482)
T KOG1947|consen 187 CPLLKRLSLSGC 198 (482)
T ss_pred CchhhHhhhccc
Confidence 455555555544
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.78 E-value=0.00069 Score=60.34 Aligned_cols=85 Identities=28% Similarity=0.387 Sum_probs=39.9
Q ss_pred CCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCC--cCCCCCCcccCCCCCCCEEEccccccCcc-cCcccCCCCCCC
Q 047676 96 ISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKN--KLSGSIPLEVGRLSSLNNLTLYANCLEGL-IPHSLGNLTNLA 172 (576)
Q Consensus 96 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~ 172 (576)
+..|+.|++.+..++.. ..+..+++|++|.++.| ++.+.++.-..++++|+++++++|++..+ ....+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 34444444444444311 22445556666666665 33433444444455666666666555432 112233444555
Q ss_pred EEEeecccCc
Q 047676 173 ILYLYNNSLS 182 (576)
Q Consensus 173 ~L~l~~~~~~ 182 (576)
.|++.+|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 5555555443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.63 E-value=0.00071 Score=35.57 Aligned_cols=22 Identities=45% Similarity=0.742 Sum_probs=15.8
Q ss_pred CCceEeCcCCccccccCcccccc
Q 047676 553 SLEKLNLSHNSLSGVIPRCFEEM 575 (576)
Q Consensus 553 ~L~~L~l~~~~l~~~~p~~~~~~ 575 (576)
+|++|+|++|+++ .+|+.|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4678888888887 677667764
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.0016 Score=55.64 Aligned_cols=81 Identities=20% Similarity=0.112 Sum_probs=38.7
Q ss_pred CceeecccccccccCCcccccCCCCCEeeCCCCc-Cccccchhcc-CCCCCCEeeCCCCc-CCCCccccccCCCCCCEEe
Q 047676 458 FIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNR-LSNSIPESLG-NLVKLHYLNLSNNH-FSREIPIKLEELIHLSELD 534 (576)
Q Consensus 458 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~-~~~~~~~~~~-~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~ 534 (576)
++.++-+++.+..+....+..+++++.|.+.+|. +.+.--..+. ..++|+.|+|++|+ ||......+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4555555555555544555555555555555555 2221111111 23455555555443 4444444455555555555
Q ss_pred CCCC
Q 047676 535 LSYN 538 (576)
Q Consensus 535 l~~~ 538 (576)
+.+=
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 5443
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=0.0033 Score=53.75 Aligned_cols=84 Identities=27% Similarity=0.288 Sum_probs=49.8
Q ss_pred CCCEEeCCCCcccccCcccccCccCCceeeccccccccc-CCcccc-cCCCCCEeeCCCCc-CccccchhccCCCCCCEe
Q 047676 433 QLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQ-LSPKLG-LLVQLEHLDLSSNR-LSNSIPESLGNLVKLHYL 509 (576)
Q Consensus 433 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~-~~~~L~~L~ls~~~-~~~~~~~~~~~l~~L~~L 509 (576)
.++.++-+++.+.......+.+++.++.|.+.+|...+. -...+. -.++|+.|+|++|+ |++.--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 355666666666555555666666666666666643221 111111 34677888888777 665444556667777777
Q ss_pred eCCCCcC
Q 047676 510 NLSNNHF 516 (576)
Q Consensus 510 ~l~~~~~ 516 (576)
.+.+-+.
T Consensus 182 ~l~~l~~ 188 (221)
T KOG3864|consen 182 HLYDLPY 188 (221)
T ss_pred HhcCchh
Confidence 7766543
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.57 E-value=0.00019 Score=72.15 Aligned_cols=182 Identities=28% Similarity=0.304 Sum_probs=110.9
Q ss_pred CCcEEEccCccceeec----CccccCCCCCcEEEccCCccccccC----cccCCC-CCCCEEEccCCccccc----CCcc
Q 047676 361 SLVRVRLNRNYLTGNI----SESFYIYPNLTFIDLSHNNFYGEIS----SDWGRC-PKLDSLDFSTNNITGN----IPSE 427 (576)
Q Consensus 361 ~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~----~~~~ 427 (576)
.+..+.+.+|.+.... ...+...+.|+.|++++|.+.+... ..+... ..+++|++..|.++.. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3677777777766532 3345667888899999888874322 223333 5677788888877644 3344
Q ss_pred ccCCCCCCEEeCCCCccccc----Cccccc----CccCCceeeccccccccc----CCcccccCCC-CCEeeCCCCcCcc
Q 047676 428 IGYSSQLEVLDLSSNHIVGE----IPTELG----KLSFFIKLILAQNQLSGQ----LSPKLGLLVQ-LEHLDLSSNRLSN 494 (576)
Q Consensus 428 ~~~~~~L~~L~l~~~~~~~~----~~~~l~----~l~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~ls~~~~~~ 494 (576)
+.....+++++++.|.+... .+..+. ...+++.|.+.+|.++.. ....+...++ ++.|++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 55678888888888876321 122222 356677777777776642 1123334444 6667777777664
Q ss_pred c----cchhccCC-CCCCEeeCCCCcCCCCccc----cccCCCCCCEEeCCCCcCcc
Q 047676 495 S----IPESLGNL-VKLHYLNLSNNHFSREIPI----KLEELIHLSELDLSYNFLGR 542 (576)
Q Consensus 495 ~----~~~~~~~l-~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~ 542 (576)
. ....+..+ +.++.++++.|+|+..... .+..+++++++.+++|++..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 3 12334444 5667777777777644433 33455677777777777744
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.19 E-value=0.016 Score=30.35 Aligned_cols=18 Identities=56% Similarity=0.578 Sum_probs=9.0
Q ss_pred CCEEeCCCCcCcccCCccC
Q 047676 530 LSELDLSYNFLGREIPSQI 548 (576)
Q Consensus 530 L~~L~l~~~~~~~~~~~~l 548 (576)
|++|++++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555554 344433
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.78 E-value=0.0003 Score=70.75 Aligned_cols=202 Identities=27% Similarity=0.231 Sum_probs=121.5
Q ss_pred CcEEEccCCcccccCC-----CCCCCCCCcEEEccCccceeecCc----cccCC-CCCcEEEccCCcccccc----Cccc
Q 047676 339 LTKLLLGNNQFQGPIP-----NLRNLTSLVRVRLNRNYLTGNISE----SFYIY-PNLTFIDLSHNNFYGEI----SSDW 404 (576)
Q Consensus 339 L~~L~l~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~----~~~~ 404 (576)
+..+.+.+|.+..... .+...+.|+.|++++|.+.+.... .+... ..++.|.+..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6667777777654322 266777888888888887743222 12222 45666777777666442 2344
Q ss_pred CCCCCCCEEEccCCccccc----CCccc----cCCCCCCEEeCCCCcccccC----cccccCccC-Cceeeccccccccc
Q 047676 405 GRCPKLDSLDFSTNNITGN----IPSEI----GYSSQLEVLDLSSNHIVGEI----PTELGKLSF-FIKLILAQNQLSGQ 471 (576)
Q Consensus 405 ~~~~~L~~L~l~~~~~~~~----~~~~~----~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~-L~~L~l~~~~~~~~ 471 (576)
.....++.++++.|.+... .+..+ ....++++|.+++|.++... ...+...+. +.++++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 5577888888888876422 12222 34677888888888765332 223344444 66788888877643
Q ss_pred ----CCcccccC-CCCCEeeCCCCcCcccc----chhccCCCCCCEeeCCCCcCCCCcccc----ccCCCCCCEEeCCCC
Q 047676 472 ----LSPKLGLL-VQLEHLDLSSNRLSNSI----PESLGNLVKLHYLNLSNNHFSREIPIK----LEELIHLSELDLSYN 538 (576)
Q Consensus 472 ----~~~~~~~~-~~L~~L~ls~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~ 538 (576)
....+..+ ..+++++++.|++++.. ...+..++.++.|.+++|++....... ...-..+.++-+.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 22234444 56788888888877542 345666778888888888886443321 222345555555555
Q ss_pred cC
Q 047676 539 FL 540 (576)
Q Consensus 539 ~~ 540 (576)
..
T Consensus 329 ~~ 330 (478)
T KOG4308|consen 329 GK 330 (478)
T ss_pred Cc
Confidence 43
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.64 E-value=0.074 Score=25.74 Aligned_cols=13 Identities=46% Similarity=0.721 Sum_probs=5.1
Q ss_pred CCceEeCcCCccc
Q 047676 553 SLEKLNLSHNSLS 565 (576)
Q Consensus 553 ~L~~L~l~~~~l~ 565 (576)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555543
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.07 E-value=0.24 Score=27.07 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=12.3
Q ss_pred CCCceEeCcCCccccccCcccc
Q 047676 552 QSLEKLNLSHNSLSGVIPRCFE 573 (576)
Q Consensus 552 ~~L~~L~l~~~~l~~~~p~~~~ 573 (576)
++|+.|++++|+++.+-+..|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 4566666666666644334443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.07 E-value=0.24 Score=27.07 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=12.3
Q ss_pred CCCceEeCcCCccccccCcccc
Q 047676 552 QSLEKLNLSHNSLSGVIPRCFE 573 (576)
Q Consensus 552 ~~L~~L~l~~~~l~~~~p~~~~ 573 (576)
++|+.|++++|+++.+-+..|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 4566666666666644334443
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.50 E-value=0.078 Score=28.39 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=7.1
Q ss_pred CCCceEeCcCCccccc
Q 047676 552 QSLEKLNLSHNSLSGV 567 (576)
Q Consensus 552 ~~L~~L~l~~~~l~~~ 567 (576)
++|++|+|++|+|++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4455555555555443
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.26 E-value=0.65 Score=25.28 Aligned_cols=12 Identities=67% Similarity=0.758 Sum_probs=5.4
Q ss_pred CCCEEeCCCCcC
Q 047676 529 HLSELDLSYNFL 540 (576)
Q Consensus 529 ~L~~L~l~~~~~ 540 (576)
+|++|++++|++
T Consensus 3 ~L~~L~L~~N~l 14 (26)
T smart00370 3 NLRELDLSNNQL 14 (26)
T ss_pred CCCEEECCCCcC
Confidence 344444444444
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.26 E-value=0.65 Score=25.28 Aligned_cols=12 Identities=67% Similarity=0.758 Sum_probs=5.4
Q ss_pred CCCEEeCCCCcC
Q 047676 529 HLSELDLSYNFL 540 (576)
Q Consensus 529 ~L~~L~l~~~~~ 540 (576)
+|++|++++|++
T Consensus 3 ~L~~L~L~~N~l 14 (26)
T smart00369 3 NLRELDLSNNQL 14 (26)
T ss_pred CCCEEECCCCcC
Confidence 344444444444
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.76 E-value=0.02 Score=50.16 Aligned_cols=81 Identities=21% Similarity=0.180 Sum_probs=42.0
Q ss_pred CEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeC
Q 047676 49 RVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNL 128 (576)
Q Consensus 49 ~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 128 (576)
+++.||++.+.+...-. -|+.++.+..||++.+.+. -+|..+.....++.+++..|+.. ..|.++...+++++++.
T Consensus 43 r~tvld~~s~r~vn~~~--n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVNLGK--NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred eeeeehhhhhHHHhhcc--chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 55555555554432211 2444455555555555543 34455555555555555555443 55555666666666666
Q ss_pred CCCcC
Q 047676 129 SKNKL 133 (576)
Q Consensus 129 ~~~~~ 133 (576)
.++.+
T Consensus 119 k~~~~ 123 (326)
T KOG0473|consen 119 KKTEF 123 (326)
T ss_pred ccCcc
Confidence 55543
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.47 E-value=0.029 Score=49.22 Aligned_cols=86 Identities=23% Similarity=0.226 Sum_probs=51.8
Q ss_pred ccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCC
Q 047676 68 SFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSL 147 (576)
Q Consensus 68 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 147 (576)
.+..+...++||++.+++. .+..-|+.+..|.-|+++.+.+. -+|..+.....++.++...|..+ ..|.+++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4555666777777777654 22234555556666666666554 55666666666666666666555 566666666666
Q ss_pred CEEEccccc
Q 047676 148 NNLTLYANC 156 (576)
Q Consensus 148 ~~L~l~~~~ 156 (576)
+.++.-.+.
T Consensus 114 k~~e~k~~~ 122 (326)
T KOG0473|consen 114 KKNEQKKTE 122 (326)
T ss_pred chhhhccCc
Confidence 666655554
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.06 E-value=4 Score=22.27 Aligned_cols=17 Identities=47% Similarity=0.802 Sum_probs=9.7
Q ss_pred CCceEeCcCCccccccCc
Q 047676 553 SLEKLNLSHNSLSGVIPR 570 (576)
Q Consensus 553 ~L~~L~l~~~~l~~~~p~ 570 (576)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4556666666664 4554
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=67.00 E-value=5 Score=21.97 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=6.9
Q ss_pred CCCCEeeCCCCcC
Q 047676 504 VKLHYLNLSNNHF 516 (576)
Q Consensus 504 ~~L~~L~l~~~~~ 516 (576)
++|+.|+++.|+|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3455555555555
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=62.35 E-value=50 Score=33.07 Aligned_cols=66 Identities=20% Similarity=0.140 Sum_probs=30.8
Q ss_pred CCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccc---cCCCCCcEEEcccCcccccCch
Q 047676 264 LTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSL---SNLTNLVFLSFYQNSLSGAIPK 331 (576)
Q Consensus 264 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~ 331 (576)
.+.+++++++.+.+....+..+..-.+= +.+..|..++.....+ ..-..+.+++++.+...+..+.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~p--l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNP--LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR 232 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCc--cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchh
Confidence 3557777777777766555554332111 3334443322111000 0113455666666665544443
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.33 E-value=4 Score=41.24 Aligned_cols=67 Identities=30% Similarity=0.213 Sum_probs=43.9
Q ss_pred ccCCCCCEeeCCCCcCcccc--chhccCCCCCCEeeCCCCcCCCCccccccC--CCCCCEEeCCCCcCccc
Q 047676 477 GLLVQLEHLDLSSNRLSNSI--PESLGNLVKLHYLNLSNNHFSREIPIKLEE--LIHLSELDLSYNFLGRE 543 (576)
Q Consensus 477 ~~~~~L~~L~ls~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~ 543 (576)
.+.+.+..+.+++|.+.... ...-...|.|+.|+|++|..--.....+.+ ..-|++|-+.||++.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 46778888999999876432 222344689999999999321111122222 35788999999998654
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.81 E-value=3.5 Score=22.96 Aligned_cols=12 Identities=50% Similarity=0.684 Sum_probs=5.5
Q ss_pred CCCEeeCCCCcC
Q 047676 505 KLHYLNLSNNHF 516 (576)
Q Consensus 505 ~L~~L~l~~~~~ 516 (576)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 344444444444
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=58.16 E-value=7.1 Score=21.15 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=11.8
Q ss_pred CCCCceEeCcCCc-cc
Q 047676 551 MQSLEKLNLSHNS-LS 565 (576)
Q Consensus 551 ~~~L~~L~l~~~~-l~ 565 (576)
+++|++|+|++|+ ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4688999999995 55
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.81 E-value=16 Score=37.08 Aligned_cols=66 Identities=30% Similarity=0.301 Sum_probs=37.5
Q ss_pred CCCCCCCEEEccCCccccc--CCccccCCCCCCEEeCCCCcccccCcccccC--ccCCceeecccccccc
Q 047676 405 GRCPKLDSLDFSTNNITGN--IPSEIGYSSQLEVLDLSSNHIVGEIPTELGK--LSFFIKLILAQNQLSG 470 (576)
Q Consensus 405 ~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~ 470 (576)
...|.+..+.+++|++... +.......|+|..|+|++|...-.....+.+ ...|++|.+.||++-+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 4567788888888877532 2222345677888888887221111112222 2346777777776653
Done!