Query 047676
Match_columns 576
No_of_seqs 322 out of 3866
Neff 10.8
Searched_HMMs 29240
Date Tue Mar 26 00:03:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.3E-67 7.9E-72 569.1 49.3 561 2-575 12-703 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.2E-60 7.5E-65 514.6 44.6 521 48-571 100-723 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.6E-55 1.2E-59 470.2 50.1 524 48-572 25-604 (680)
4 3t6q_A CD180 antigen; protein- 100.0 1.1E-54 3.6E-59 460.5 44.2 493 74-569 34-564 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 4.9E-53 1.7E-57 453.6 49.4 521 48-569 49-626 (680)
6 3t6q_A CD180 antigen; protein- 100.0 1.5E-52 5.1E-57 444.0 43.1 492 48-543 33-562 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 8E-53 2.7E-57 446.0 39.2 511 48-569 32-562 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 7E-51 2.4E-55 431.1 38.5 511 51-575 14-543 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2.3E-49 7.9E-54 432.8 40.0 514 37-566 14-561 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 9.7E-49 3.3E-53 427.9 41.4 509 51-575 7-549 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 9.7E-49 3.3E-53 412.1 35.7 491 73-571 28-537 (570)
12 4eco_A Uncharacterized protein 100.0 4.2E-50 1.4E-54 424.3 24.3 487 2-543 30-602 (636)
13 4ecn_A Leucine-rich repeat pro 100.0 2.3E-48 7.9E-53 416.7 31.5 502 2-562 269-861 (876)
14 2z63_A TOLL-like receptor 4, v 100.0 8.6E-47 2.9E-51 397.2 38.3 491 47-546 27-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.8E-46 9.5E-51 391.2 34.1 487 36-569 3-514 (549)
16 4g8a_A TOLL-like receptor 4; l 100.0 2.5E-42 8.7E-47 368.4 42.9 509 49-566 53-581 (635)
17 2z81_A CD282 antigen, TOLL-lik 100.0 2.9E-43 9.9E-48 368.4 32.3 468 74-575 6-496 (549)
18 2z7x_B TOLL-like receptor 1, v 100.0 4E-43 1.4E-47 364.5 29.9 456 76-569 3-485 (520)
19 2z7x_B TOLL-like receptor 1, v 100.0 6.9E-43 2.4E-47 362.7 28.7 452 51-543 3-483 (520)
20 4eco_A Uncharacterized protein 100.0 1.8E-43 6E-48 373.7 20.4 458 97-572 81-607 (636)
21 4g8a_A TOLL-like receptor 4; l 100.0 1.6E-40 5.3E-45 354.6 38.2 512 52-575 35-565 (635)
22 4ecn_A Leucine-rich repeat pro 100.0 6.6E-41 2.3E-45 359.1 29.6 381 155-574 435-849 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.8E-40 2.3E-44 342.9 29.0 460 72-569 30-514 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.9E-39 9.9E-44 338.1 29.8 455 50-542 33-511 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 5.5E-37 1.9E-41 313.0 29.5 379 173-569 14-412 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 9.9E-37 3.4E-41 311.1 30.5 391 100-545 13-412 (455)
27 1ogq_A PGIP-2, polygalacturona 100.0 4.1E-37 1.4E-41 296.2 19.7 288 2-300 6-302 (313)
28 1jl5_A Outer protein YOPM; leu 100.0 3.9E-36 1.3E-40 303.5 23.0 422 72-571 10-435 (454)
29 1o6v_A Internalin A; bacterial 100.0 6E-35 2.1E-39 297.9 31.3 346 167-542 44-389 (466)
30 1jl5_A Outer protein YOPM; leu 100.0 1.9E-35 6.5E-40 298.5 24.9 407 96-575 10-421 (454)
31 1o6v_A Internalin A; bacterial 100.0 7.8E-34 2.7E-38 289.7 32.6 346 143-518 44-389 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-33 3.8E-38 285.9 27.2 377 109-560 30-407 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 2.9E-33 9.8E-38 287.0 27.8 320 220-542 14-334 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 6.6E-33 2.2E-37 280.2 29.1 412 87-573 32-451 (457)
35 2id5_A Lingo-1, leucine rich r 100.0 3.4E-33 1.1E-37 286.5 27.1 350 196-549 14-364 (477)
36 4fmz_A Internalin; leucine ric 100.0 1.7E-32 5.9E-37 269.2 27.3 306 214-565 41-346 (347)
37 3o6n_A APL1; leucine-rich repe 100.0 4.1E-32 1.4E-36 270.7 25.5 311 71-422 43-353 (390)
38 4fmz_A Internalin; leucine ric 100.0 1.6E-31 5.4E-36 262.3 28.6 308 188-541 39-346 (347)
39 3o6n_A APL1; leucine-rich repe 100.0 3.6E-31 1.2E-35 263.9 28.0 311 216-543 44-354 (390)
40 3oja_B Anopheles plasmodium-re 100.0 5.5E-31 1.9E-35 276.7 27.8 311 71-422 49-359 (597)
41 3oja_B Anopheles plasmodium-re 100.0 2.9E-30 1E-34 271.2 27.6 309 217-542 51-359 (597)
42 1xku_A Decorin; proteoglycan, 100.0 4.2E-29 1.4E-33 242.9 28.3 289 266-563 32-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 3.2E-29 1.1E-33 243.9 26.8 288 266-563 34-331 (332)
44 4fcg_A Uncharacterized protein 100.0 1E-30 3.6E-35 252.9 14.1 278 2-301 27-313 (328)
45 2ft3_A Biglycan; proteoglycan, 100.0 5.8E-29 2E-33 242.1 26.2 287 50-348 35-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 1.2E-28 4E-33 239.8 28.2 286 51-347 34-329 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 3.3E-33 1.1E-37 285.7 -4.8 384 169-572 3-447 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 8.4E-33 2.9E-37 282.6 -4.1 381 145-543 3-442 (461)
49 1ogq_A PGIP-2, polygalacturona 100.0 2.3E-29 7.9E-34 242.1 18.6 251 313-566 50-306 (313)
50 3ogk_B Coronatine-insensitive 100.0 1.3E-30 4.4E-35 275.2 -1.7 435 113-561 65-547 (592)
51 2z66_A Variable lymphocyte rec 100.0 2.8E-27 9.5E-32 227.5 18.6 252 35-302 5-261 (306)
52 2z80_A TOLL-like receptor 2, v 99.9 2.2E-27 7.7E-32 232.9 18.3 283 32-328 25-316 (353)
53 3ogk_B Coronatine-insensitive 99.9 3.8E-30 1.3E-34 271.6 -3.6 376 191-567 110-528 (592)
54 3zyj_A Leucine-rich repeat-con 99.9 1.5E-25 5.1E-30 226.7 25.3 247 50-302 45-292 (440)
55 2z66_A Variable lymphocyte rec 99.9 1.1E-25 3.7E-30 216.4 22.9 278 292-573 10-295 (306)
56 3zyi_A Leucine-rich repeat-con 99.9 1.8E-25 6.1E-30 227.0 25.2 246 51-302 57-303 (452)
57 2z80_A TOLL-like receptor 2, v 99.9 2E-26 6.7E-31 226.2 15.6 279 265-568 31-317 (353)
58 1ozn_A Reticulon 4 receptor; N 99.9 6.2E-26 2.1E-30 215.6 18.2 224 51-278 14-238 (285)
59 4fcg_A Uncharacterized protein 99.9 9.7E-26 3.3E-30 218.0 19.7 235 72-326 80-314 (328)
60 3zyi_A Leucine-rich repeat-con 99.9 6E-25 2E-29 223.1 26.3 245 292-564 57-302 (452)
61 3zyj_A Leucine-rich repeat-con 99.9 5.3E-25 1.8E-29 222.7 25.6 225 338-564 65-291 (440)
62 1ozn_A Reticulon 4 receptor; N 99.9 4.3E-25 1.5E-29 209.8 22.8 254 316-573 14-269 (285)
63 2p1m_B Transport inhibitor res 99.9 2.4E-29 8.1E-34 265.7 -7.6 433 100-537 46-540 (594)
64 2p1m_B Transport inhibitor res 99.9 2.7E-29 9.1E-34 265.3 -7.3 436 76-516 46-543 (594)
65 2o6q_A Variable lymphocyte rec 99.9 1.1E-24 3.8E-29 204.9 22.5 216 34-253 2-217 (270)
66 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-26 7.1E-31 222.1 7.1 258 268-562 13-272 (317)
67 3g06_A SSPH2 (leucine-rich rep 99.9 2.5E-23 8.7E-28 216.1 27.8 266 241-573 40-305 (622)
68 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-24 4.6E-29 209.4 13.7 242 319-574 16-260 (317)
69 2z62_A TOLL-like receptor 4, v 99.9 5.7E-23 2E-27 194.1 21.9 207 361-568 29-240 (276)
70 1wwl_A Monocyte differentiatio 99.9 1.4E-25 4.7E-30 215.8 3.3 249 286-567 40-311 (312)
71 3oja_A Leucine-rich immune mol 99.9 2.9E-24 1E-28 219.0 11.8 235 313-560 34-270 (487)
72 1wwl_A Monocyte differentiatio 99.9 1.6E-25 5.6E-30 215.3 1.6 247 71-327 41-310 (312)
73 3g06_A SSPH2 (leucine-rich rep 99.9 5.3E-22 1.8E-26 206.2 28.0 267 217-526 40-306 (622)
74 2o6q_A Variable lymphocyte rec 99.9 2.6E-22 8.9E-27 188.7 22.5 203 338-542 17-219 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 7.6E-23 2.6E-27 193.3 18.8 205 73-278 28-237 (276)
76 3oja_A Leucine-rich immune mol 99.9 1.8E-23 6E-28 213.2 15.4 227 334-574 31-260 (487)
77 3rfs_A Internalin B, repeat mo 99.9 7.3E-23 2.5E-27 192.7 17.1 186 380-574 59-244 (272)
78 3rfs_A Internalin B, repeat mo 99.9 3E-22 1E-26 188.4 16.7 210 68-288 36-245 (272)
79 2ast_B S-phase kinase-associat 99.9 2E-23 6.8E-28 203.6 8.1 252 315-573 49-314 (336)
80 1p9a_G Platelet glycoprotein I 99.9 1.5E-21 5.3E-26 184.9 20.7 203 333-541 6-208 (290)
81 1p9a_G Platelet glycoprotein I 99.9 1E-20 3.4E-25 179.3 22.2 202 309-517 6-208 (290)
82 2ast_B S-phase kinase-associat 99.9 2.4E-23 8.4E-28 203.0 0.7 233 37-275 37-282 (336)
83 3m19_A Variable lymphocyte rec 99.9 1.5E-20 5.3E-25 174.5 18.6 189 35-229 3-191 (251)
84 2xwt_C Thyrotropin receptor; s 99.9 7.5E-21 2.5E-25 175.4 15.1 197 73-275 31-236 (239)
85 2xwt_C Thyrotropin receptor; s 99.9 8.7E-21 3E-25 175.0 15.6 197 360-562 31-236 (239)
86 3m19_A Variable lymphocyte rec 99.9 3.5E-20 1.2E-24 172.1 19.7 178 362-542 16-193 (251)
87 1h6u_A Internalin H; cell adhe 99.8 1.9E-20 6.4E-25 179.3 18.2 195 333-542 37-231 (308)
88 2ca6_A RAN GTPase-activating p 99.8 1.3E-22 4.5E-27 201.5 2.8 189 381-569 91-320 (386)
89 3goz_A Leucine-rich repeat-con 99.8 4.5E-22 1.5E-26 195.6 5.5 251 293-543 2-299 (362)
90 4glp_A Monocyte differentiatio 99.8 7E-21 2.4E-25 182.8 13.4 181 381-566 114-308 (310)
91 1h6u_A Internalin H; cell adhe 99.8 5E-20 1.7E-24 176.4 16.6 194 69-278 37-230 (308)
92 3goz_A Leucine-rich repeat-con 99.8 6.8E-22 2.3E-26 194.3 3.6 178 53-231 3-210 (362)
93 2ca6_A RAN GTPase-activating p 99.8 4.5E-22 1.6E-26 197.7 0.7 245 281-544 24-319 (386)
94 4glp_A Monocyte differentiatio 99.8 3.2E-20 1.1E-24 178.3 13.5 225 72-302 63-307 (310)
95 2o6s_A Variable lymphocyte rec 99.8 2.4E-19 8.3E-24 161.4 15.9 188 33-242 3-190 (208)
96 2o6s_A Variable lymphocyte rec 99.8 4.8E-19 1.7E-23 159.4 15.2 161 384-551 28-188 (208)
97 4ay9_X Follicle-stimulating ho 99.8 2.2E-18 7.4E-23 168.4 18.8 221 73-298 30-255 (350)
98 3e6j_A Variable lymphocyte rec 99.8 6.7E-18 2.3E-22 154.0 16.0 160 32-207 14-173 (229)
99 3cvr_A Invasion plasmid antige 99.8 6.4E-18 2.2E-22 173.4 17.1 184 338-548 60-250 (571)
100 1h6t_A Internalin B; cell adhe 99.8 6.5E-18 2.2E-22 160.1 16.0 172 357-542 43-214 (291)
101 2v9t_B SLIT homolog 2 protein 99.8 1.3E-17 4.4E-22 151.0 16.1 152 387-541 14-165 (220)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-17 4.9E-22 150.7 16.4 150 388-540 15-165 (220)
103 4ay9_X Follicle-stimulating ho 99.8 2.9E-17 9.8E-22 160.4 18.8 200 100-303 12-216 (350)
104 1h6t_A Internalin B; cell adhe 99.7 8.2E-18 2.8E-22 159.4 12.5 171 69-253 42-212 (291)
105 3cvr_A Invasion plasmid antige 99.7 9.2E-18 3.1E-22 172.2 13.1 192 38-259 49-248 (571)
106 3e6j_A Variable lymphocyte rec 99.7 6.4E-17 2.2E-21 147.5 17.0 133 408-541 40-172 (229)
107 4ezg_A Putative uncharacterize 99.7 2.1E-17 7.2E-22 147.1 13.3 154 405-566 41-195 (197)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 4.9E-17 1.7E-21 147.2 15.3 152 52-207 15-167 (220)
109 1m9s_A Internalin B; cell inva 99.7 4.3E-17 1.5E-21 169.3 16.5 175 356-544 39-213 (605)
110 2xot_A Amphoterin-induced prot 99.7 3.2E-17 1.1E-21 160.7 14.0 176 363-541 21-202 (361)
111 2v9t_B SLIT homolog 2 protein 99.7 1.4E-16 4.7E-21 144.2 16.3 134 73-206 32-165 (220)
112 4fs7_A Uncharacterized protein 99.7 1.3E-15 4.5E-20 151.2 24.6 63 112-176 62-124 (394)
113 4fs7_A Uncharacterized protein 99.7 1.3E-15 4.3E-20 151.3 24.3 101 356-461 293-393 (394)
114 1m9s_A Internalin B; cell inva 99.7 6.4E-17 2.2E-21 167.9 15.3 174 69-256 39-212 (605)
115 2xot_A Amphoterin-induced prot 99.7 1.3E-16 4.4E-21 156.4 14.5 176 340-517 21-202 (361)
116 1xeu_A Internalin C; cellular 99.7 6.2E-17 2.1E-21 150.8 11.2 169 360-543 19-187 (263)
117 3sb4_A Hypothetical leucine ri 99.7 1.4E-16 4.8E-21 154.1 13.0 263 168-462 48-327 (329)
118 4ezg_A Putative uncharacterize 99.7 1.4E-16 4.6E-21 141.8 11.8 150 96-253 43-193 (197)
119 4fdw_A Leucine rich hypothetic 99.7 5.4E-15 1.9E-19 145.8 22.7 268 69-349 109-382 (401)
120 3sb4_A Hypothetical leucine ri 99.7 1.1E-16 3.7E-21 154.9 9.8 281 49-344 26-328 (329)
121 4fdw_A Leucine rich hypothetic 99.7 1.3E-14 4.3E-19 143.2 23.4 265 287-564 111-382 (401)
122 2ell_A Acidic leucine-rich nuc 99.7 4.6E-16 1.6E-20 134.6 11.5 139 430-571 22-165 (168)
123 1xeu_A Internalin C; cellular 99.6 2.3E-16 7.8E-21 147.0 8.4 167 72-253 18-184 (263)
124 1w8a_A SLIT protein; signaling 99.6 5.2E-15 1.8E-19 130.8 13.8 130 411-543 11-141 (192)
125 4b8c_D Glucose-repressible alc 99.6 1.1E-16 3.8E-21 170.6 3.1 231 3-251 133-369 (727)
126 2ell_A Acidic leucine-rich nuc 99.6 3.8E-15 1.3E-19 128.8 11.4 135 406-542 22-161 (168)
127 2je0_A Acidic leucine-rich nuc 99.6 2.1E-15 7.1E-20 127.6 9.3 128 432-561 17-149 (149)
128 4gt6_A Cell surface protein; l 99.6 7E-13 2.4E-17 131.5 26.4 330 211-564 57-390 (394)
129 2je0_A Acidic leucine-rich nuc 99.6 5.3E-15 1.8E-19 125.0 9.5 129 407-537 16-149 (149)
130 4gt6_A Cell surface protein; l 99.6 9.9E-13 3.4E-17 130.4 27.1 129 356-491 261-389 (394)
131 1w8a_A SLIT protein; signaling 99.6 4.7E-14 1.6E-18 124.6 14.4 127 52-182 12-139 (192)
132 1dce_A Protein (RAB geranylger 99.6 9.3E-18 3.2E-22 173.2 -11.6 186 94-302 346-546 (567)
133 2o6r_A Variable lymphocyte rec 99.6 4.9E-14 1.7E-18 122.9 13.8 131 410-543 9-139 (177)
134 2o6r_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 120.8 15.6 134 35-183 5-138 (177)
135 2wfh_A SLIT homolog 2 protein 99.5 6.5E-14 2.2E-18 123.6 14.2 127 411-541 13-139 (193)
136 1dce_A Protein (RAB geranylger 99.5 8.5E-17 2.9E-21 166.1 -6.4 106 458-568 443-549 (567)
137 2wfh_A SLIT homolog 2 protein 99.5 1.8E-13 6.3E-18 120.6 14.6 126 52-182 14-139 (193)
138 4b8c_D Glucose-repressible alc 99.5 5.3E-15 1.8E-19 157.6 4.2 191 360-562 173-369 (727)
139 1a9n_A U2A', U2A'; complex (nu 99.5 5.2E-14 1.8E-18 122.5 9.4 104 457-564 43-152 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-13 3.8E-18 120.4 9.3 134 404-542 15-154 (176)
141 1ds9_A Outer arm dynein; leuci 99.4 1.8E-15 6.2E-20 134.6 -7.0 133 427-566 43-186 (198)
142 4h09_A Hypothetical leucine ri 99.4 1.5E-10 5.3E-15 114.1 26.5 316 211-551 40-355 (379)
143 4h09_A Hypothetical leucine ri 99.3 3.9E-10 1.3E-14 111.2 26.7 302 235-573 40-353 (379)
144 3g39_A Variable lymphocyte rec 99.3 7.3E-12 2.5E-16 107.9 12.0 105 434-541 11-115 (170)
145 3un9_A NLR family member X1; l 99.3 5.7E-14 2E-18 137.1 -2.2 184 383-566 71-284 (372)
146 1ds9_A Outer arm dynein; leuci 99.3 1.3E-14 4.3E-19 129.1 -6.6 133 403-542 43-186 (198)
147 3g39_A Variable lymphocyte rec 99.3 1.4E-11 4.7E-16 106.2 12.5 84 73-156 30-113 (170)
148 2r9u_A Variable lymphocyte rec 99.3 2E-11 7E-16 105.4 12.6 84 73-156 33-116 (174)
149 2r9u_A Variable lymphocyte rec 99.3 1.8E-11 6.1E-16 105.8 12.1 104 435-541 15-118 (174)
150 3un9_A NLR family member X1; l 99.3 8.7E-14 3E-18 135.9 -3.4 183 359-541 71-283 (372)
151 2ifg_A High affinity nerve gro 99.0 9.8E-10 3.4E-14 106.9 11.1 92 64-158 24-116 (347)
152 2ifg_A High affinity nerve gro 99.0 1.3E-09 4.4E-14 106.0 11.3 103 436-541 12-116 (347)
153 2ra8_A Uncharacterized protein 98.8 1.7E-09 5.6E-14 104.6 4.4 156 379-539 167-341 (362)
154 2ra8_A Uncharacterized protein 98.8 2.3E-09 7.7E-14 103.6 4.4 179 380-563 135-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 1.7E-08 5.9E-13 87.8 2.2 90 427-516 31-135 (185)
156 3e4g_A ATP synthase subunit S, 98.5 1.1E-08 3.8E-13 86.4 0.6 84 456-539 61-150 (176)
157 1io0_A Tropomodulin; LRR prote 98.5 3.3E-08 1.1E-12 86.1 2.8 113 404-516 32-163 (185)
158 3e4g_A ATP synthase subunit S, 98.5 2.5E-08 8.7E-13 84.1 1.5 84 432-515 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.2 3.3E-07 1.1E-11 83.7 1.8 80 477-558 167-257 (267)
160 3rw6_A Nuclear RNA export fact 98.0 1.2E-06 4.3E-11 79.9 1.8 84 485-570 148-238 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 8.1E-05 2.8E-09 64.0 2.4 86 428-513 37-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00017 5.8E-09 62.0 3.8 42 428-469 66-111 (197)
163 3rfe_A Platelet glycoprotein I 96.6 0.0039 1.3E-07 49.9 6.4 36 505-540 32-67 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0046 1.6E-07 49.5 6.4 57 507-565 11-68 (130)
165 2lz0_A Uncharacterized protein 78.4 4.7 0.00016 29.9 5.8 42 399-441 11-52 (100)
166 2lz0_A Uncharacterized protein 74.8 10 0.00034 28.1 6.7 45 229-274 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-67 Score=569.14 Aligned_cols=561 Identities=32% Similarity=0.492 Sum_probs=394.5
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCccceeeeCCCCCEEEEEcCCCCcccc---cCC------------
Q 047676 2 EESHALLRWKTSLQNHNNGSSLSSWTVNNVTKIGPCAWVGIHCNHGGRVNSINLTNIGLKGT---LHD------------ 66 (576)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~i~~l~l~~~~~~~~---~~~------------ 66 (576)
+|+++|++||+++.++ . ..++|. .+.+||.|.||.|+ .++|++++++++.+.+. ++.
T Consensus 12 ~~~~all~~k~~~~~~--~-~l~~W~----~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 12 REIHQLISFKDVLPDK--N-LLPDWS----SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp HHHHHHHHHHTTCSCT--T-SSTTCC----TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred HHHHHHHHHHhhCCCc--c-cccCCC----CCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 5889999999999966 4 889997 57789999999998 78999999999998886 443
Q ss_pred ----------cccCCCCCCCEEECCCCCCcccCCc--cccCCCCCcEEECcCCcCCCCCCccc-cCCCCCCEEeCCCCcC
Q 047676 67 ----------FSFSSFPHLAYLDLWSNQLFGNIPP--QIGNISKLKYLDLSSNSFFGAIPPQI-GHLSYLKTLNLSKNKL 133 (576)
Q Consensus 67 ----------~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~ 133 (576)
..+.++++|++|++++|.+.+.+|. .+.++++|++|++++|.+.+..|..+ .++++|++|++++|.+
T Consensus 84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence 2566777777777777777766666 67777777777777777766666554 6777777777777777
Q ss_pred CCCCCcc---cCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCC
Q 047676 134 SGSIPLE---VGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIP 210 (576)
Q Consensus 134 ~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 210 (576)
++..|.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+++..+. +..+++|++|++++|.+.+..|
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHH
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCccc
Confidence 6555555 6667777777777776654433 36677777777777777655555 7777777777777777776667
Q ss_pred ccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCC-CCCccEEEccCCcccccccccccCCC
Q 047676 211 HSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGN-LTNLGVLYIYNNLLSGSIPCEIGNLK 289 (576)
Q Consensus 211 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~l~ 289 (576)
..+..+++|++|++++|.+....+.. .+++|++|++++|.+.+..+..+.. +++|++|++++|.+.+..|..+..++
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred HHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence 77777777777777777766544432 5666677777766666555555544 36777777777777666666667777
Q ss_pred CCCeEEcccccccccCCcc-ccCCCCCcEEEcccCcccccCchhcccCC-CCcEEEccCCcccc----------------
Q 047676 290 FLSELNLGFNKLSNSIPVS-LSNLTNLVFLSFYQNSLSGAIPKEYQNLV-KLTKLLLGNNQFQG---------------- 351 (576)
Q Consensus 290 ~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~---------------- 351 (576)
+|++|++++|.+....+.. +..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+.+
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence 7777777777666444433 66666777777776666655555555544 55555555555433
Q ss_pred ----------cCCC-CCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcc
Q 047676 352 ----------PIPN-LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNI 420 (576)
Q Consensus 352 ----------~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 420 (576)
..+. +..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 2222 44445555555555555544455555555555555555555555555555666666666666666
Q ss_pred cccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchh-
Q 047676 421 TGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPES- 499 (576)
Q Consensus 421 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~- 499 (576)
.+..|..+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.+|..
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 6666666667777777777777776667777777777777777777777666777777777777777777766444432
Q ss_pred ---------------------------------------------------------------------ccCCCCCCEee
Q 047676 500 ---------------------------------------------------------------------LGNLVKLHYLN 510 (576)
Q Consensus 500 ---------------------------------------------------------------------~~~l~~L~~L~ 510 (576)
+..+++|+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 23356788888
Q ss_pred CCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCccccccCcccccc
Q 047676 511 LSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPRCFEEM 575 (576)
Q Consensus 511 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~~~~~ 575 (576)
+++|++++.+|..++.+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|+.|.+|
T Consensus 639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp CCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred CcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence 88888888888888889999999999999988899999999999999999999999999888765
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-60 Score=514.60 Aligned_cols=521 Identities=33% Similarity=0.458 Sum_probs=416.2
Q ss_pred CCEEEEEcCCCCcccccCCc-ccCCCCCCCEEECCCCCCcccCCccc-cCCCCCcEEECcCCcCCCCCCcc---c-----
Q 047676 48 GRVNSINLTNIGLKGTLHDF-SFSSFPHLAYLDLWSNQLFGNIPPQI-GNISKLKYLDLSSNSFFGAIPPQ---I----- 117 (576)
Q Consensus 48 ~~i~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~---~----- 117 (576)
.++++|+++++.+.+.++.. .+.++++|++|++++|.+.+..+..+ .++++|++|++++|.+.+..|.. +
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence 46777777777777665542 46667777777777776665555443 55666666666666555444333 3
Q ss_pred -----------------cCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeeccc
Q 047676 118 -----------------GHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNS 180 (576)
Q Consensus 118 -----------------~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 180 (576)
..+++|++|++++|.+.+..|. +..+++|++|++++|.+....+..+.++++|++|++++|.
T Consensus 180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258 (768)
T ss_dssp CCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC
T ss_pred CCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCc
Confidence 4556666666666666544444 6666667777777666666666666667777777777766
Q ss_pred CcccCCccccCCCccceeeccCCcCCCcCCccccCC-CCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCc
Q 047676 181 LSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNL-SNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPH 259 (576)
Q Consensus 181 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 259 (576)
+.+..+.. .+++|+.|++++|.+++.+|..+... ++|++|++++|.++...+..+..+++|++|++++|.+.+..+.
T Consensus 259 l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~ 336 (768)
T 3rgz_A 259 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336 (768)
T ss_dssp CEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred ccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence 66544443 56677777777777766667666554 7788888888877777777788888888888888877644443
Q ss_pred -ccCCCCCccEEEccCCcccccccccccCCC-CCCeEEcccccccccCCccccC--CCCCcEEEcccCcccccCchhccc
Q 047676 260 -FFGNLTNLGVLYIYNNLLSGSIPCEIGNLK-FLSELNLGFNKLSNSIPVSLSN--LTNLVFLSFYQNSLSGAIPKEYQN 335 (576)
Q Consensus 260 -~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~ 335 (576)
.+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+....+..+.. +++|++|++++|.+.+..|..+..
T Consensus 337 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 416 (768)
T 3rgz_A 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416 (768)
T ss_dssp HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG
T ss_pred HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc
Confidence 377778888888888888777777777776 7888888888877666666655 788999999999998888999999
Q ss_pred CCCCcEEEccCCcccccCCC-CCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEE
Q 047676 336 LVKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLD 414 (576)
Q Consensus 336 l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 414 (576)
+++|+.|++++|.+.+..+. +..+++|+.|++.+|.+.+.++..+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence 99999999999999866665 78899999999999999988888999999999999999999888888899999999999
Q ss_pred ccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCc--------------------
Q 047676 415 FSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSP-------------------- 474 (576)
Q Consensus 415 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-------------------- 474 (576)
+++|++.+.+|..+..+++|++|++++|++.+..|..+..+++|+.|++++|.+.+..+.
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence 999999989999999999999999999999989999999999999999999987643332
Q ss_pred --------------------------------------------------ccccCCCCCEeeCCCCcCccccchhccCCC
Q 047676 475 --------------------------------------------------KLGLLVQLEHLDLSSNRLSNSIPESLGNLV 504 (576)
Q Consensus 475 --------------------------------------------------~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~ 504 (576)
.+..+++|+.|++++|.+++.+|..+.+++
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 656 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence 233467899999999999999999999999
Q ss_pred CCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCccccccCcc
Q 047676 505 KLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPRC 571 (576)
Q Consensus 505 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~ 571 (576)
+|+.|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|+.
T Consensus 657 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999975
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.6e-55 Score=470.21 Aligned_cols=524 Identities=23% Similarity=0.236 Sum_probs=402.2
Q ss_pred CCEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEe
Q 047676 48 GRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLN 127 (576)
Q Consensus 48 ~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 127 (576)
.++++|+++++.+.+..+. .|.++++|++|++++|.+.+..+++|.++++|++|++++|.+.+..+..|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 5799999999999875544 899999999999999999988889999999999999999999865555799999999999
Q ss_pred CCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcccCCcccc--CCCccceeeccCCcC
Q 047676 128 LSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIG--NLKFLSRTALSHNKL 205 (576)
Q Consensus 128 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~ 205 (576)
+++|.+.+..|..+.++++|++|++++|.+....+..+.++++|++|++++|.+++..+..+. .+++|+.|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999999877778899999999999999999988888899999999999999998866555543 568899999999988
Q ss_pred CCcCCccccCC---------------------------CCCcEEEccCccccccCCccccCCCC--CCEEEccCCCCccc
Q 047676 206 SGSIPHSLGNL---------------------------SNLVILFLDNNLLFGLIPSELRNLKS--LYFLELGNNKLSGP 256 (576)
Q Consensus 206 ~~~~~~~~~~l---------------------------~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~ 256 (576)
.+..+..+..+ ++|+.|++++|.+....+.++..++. |+.|++++|.+...
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 87766665544 45677777777777777777776654 99999999988877
Q ss_pred CCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEccccccc---------ccCCccccCCCCCcEEEcccCcccc
Q 047676 257 IPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLS---------NSIPVSLSNLTNLVFLSFYQNSLSG 327 (576)
Q Consensus 257 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~ 327 (576)
.+..+..+++|++|++++|.+.+..+..+..+++|+.++++++... ......+..+++|++|++++|.+.+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 7778888889999999998888777778888888888888875332 1222356778888888888888887
Q ss_pred cCchhcccCCCCcEEEccCCccccc-CCC--CC--CCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccC-
Q 047676 328 AIPKEYQNLVKLTKLLLGNNQFQGP-IPN--LR--NLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEIS- 401 (576)
Q Consensus 328 ~~~~~~~~l~~L~~L~l~~~~~~~~-~~~--~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~- 401 (576)
..+..+..+++|++|++++|.+... .+. +. ..++|+.|++++|.+....+..+..+++|+.|++++|.+....+
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 7777788888888888888764211 111 21 12577778888777777777777777888888888877764433
Q ss_pred cccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCccc--ccCcccccCccCCceeecccccccccCCcccccC
Q 047676 402 SDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIV--GEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLL 479 (576)
Q Consensus 402 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 479 (576)
..+.++++|++|++++|++.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+....+..+.++
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence 56777778888888877777666666777777777777777664 3456667777777777777777776666667777
Q ss_pred CCCCEeeCCCCcCccccc--------hhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCC
Q 047676 480 VQLEHLDLSSNRLSNSIP--------ESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIM 551 (576)
Q Consensus 480 ~~L~~L~ls~~~~~~~~~--------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~ 551 (576)
++|++|++++|.+++..+ ..+.++++|+.|++++|+++...+..|.++++|++|++++|.+++..+..|..+
T Consensus 504 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 583 (680)
T 1ziw_A 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583 (680)
T ss_dssp TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence 777777777777664321 125667777777777777764444567777777777777777765555556677
Q ss_pred CCCceEeCcCCccccccCccc
Q 047676 552 QSLEKLNLSHNSLSGVIPRCF 572 (576)
Q Consensus 552 ~~L~~L~l~~~~l~~~~p~~~ 572 (576)
++|+.|++++|++++..|+.|
T Consensus 584 ~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 584 VSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp TTCCEEECTTSCCCBCCHHHH
T ss_pred CCCCEEECCCCcCCccChhHh
Confidence 777777777777776666544
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-54 Score=460.45 Aligned_cols=493 Identities=20% Similarity=0.213 Sum_probs=354.1
Q ss_pred CCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEcc
Q 047676 74 HLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLY 153 (576)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 153 (576)
++++|++++|.+.+..+.+|.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..+.++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred ccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCc--EEEccCccccc
Q 047676 154 ANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLV--ILFLDNNLLFG 231 (576)
Q Consensus 154 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~ 231 (576)
+|.+..+.+..+.++++|++|++++|.+++.....+..+++|+.|++++|.+.+..+..+..+++|+ .|++++|.+..
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 4444444444444444444444444444432222233344444444444444433344444444444 44444444444
Q ss_pred cCCccccCCCCCCEEEccCCC---------------------C-----cccCCcccCCCC--CccEEEccCCcccccccc
Q 047676 232 LIPSELRNLKSLYFLELGNNK---------------------L-----SGPIPHFFGNLT--NLGVLYIYNNLLSGSIPC 283 (576)
Q Consensus 232 ~~~~~l~~l~~L~~L~l~~~~---------------------~-----~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~ 283 (576)
..+..+.. ..|+.++++++. + .......+..+. +|+.+++++|.+.+..+.
T Consensus 194 ~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 194 IEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp ECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred cChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 43333222 234444444332 1 111222333332 789999999999887777
Q ss_pred cccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCC--CCCCCC
Q 047676 284 EIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN--LRNLTS 361 (576)
Q Consensus 284 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~ 361 (576)
.+..+++|++|++++|.++ ..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+. +..+++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 7999999999999999988 5666788999999999999999888788899999999999999988754443 788999
Q ss_pred CcEEEccCccceeec--CccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCc-cccCCCCCCEEe
Q 047676 362 LVRVRLNRNYLTGNI--SESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPS-EIGYSSQLEVLD 438 (576)
Q Consensus 362 L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~ 438 (576)
|+.|++++|.+.... ...+..+++|+.|++++|.+....+..+..+++|++|++++|++.+..+. .+..+++|++|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 999999999998765 67788999999999999999888888899999999999999999866544 488999999999
Q ss_pred CCCCcccccCcccccCccCCceeeccccccccc---CCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCc
Q 047676 439 LSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQ---LSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNH 515 (576)
Q Consensus 439 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~ 515 (576)
+++|.+.+..+..+..+++|++|++++|.+.+. ....+..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 999999888888899999999999999998762 33568899999999999999998888899999999999999999
Q ss_pred CCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCccccccC
Q 047676 516 FSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIP 569 (576)
Q Consensus 516 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p 569 (576)
+++..+..+..+++| +|++++|.+++..|..+..+++|+.|++++|++....+
T Consensus 512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999 99999999998888888889999999999999986554
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.9e-53 Score=453.64 Aligned_cols=521 Identities=22% Similarity=0.218 Sum_probs=450.8
Q ss_pred CCEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEe
Q 047676 48 GRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLN 127 (576)
Q Consensus 48 ~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 127 (576)
..+++|+++++.+.+..+. +|.++++|++|++++|.+.+..+.+|.++++|++|++++|.+.+..|..|+++++|++|+
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp TTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CcCcEEECCCCccCccCHH-HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 5799999999999877666 899999999999999999866666799999999999999999877778899999999999
Q ss_pred CCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccC--CCCCCCEEEeecccCcccCCccccCC-------------
Q 047676 128 LSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLG--NLTNLAILYLYNNSLSGSIPSEIGNL------------- 192 (576)
Q Consensus 128 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l------------- 192 (576)
+++|.+.+..|..+..+++|++|++++|.+....+..+. .+++|++|++++|.+++..+..+..+
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred CCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence 999999988888899999999999999998887666554 56899999999999887776666544
Q ss_pred --------------CccceeeccCCcCCCcCCccccCCCC--CcEEEccCccccccCCccccCCCCCCEEEccCCCCccc
Q 047676 193 --------------KFLSRTALSHNKLSGSIPHSLGNLSN--LVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGP 256 (576)
Q Consensus 193 --------------~~L~~L~l~~~~~~~~~~~~~~~l~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 256 (576)
++|+.|+++++.+.+..+..+..++. |+.|++++|.+....+.++..+++|+.|++++|.+...
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc
Confidence 45777888888888777888887755 99999999999988888999999999999999999988
Q ss_pred CCcccCCCCCccEEEccCCcccc-----ccc----ccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCccc-
Q 047676 257 IPHFFGNLTNLGVLYIYNNLLSG-----SIP----CEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLS- 326 (576)
Q Consensus 257 ~~~~l~~~~~L~~L~l~~~~~~~-----~~~----~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~- 326 (576)
.+..+..+++|+.|+++++...+ .+| ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~ 367 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCC
T ss_pred ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhh
Confidence 88899999999999999865432 122 26788999999999999999888888999999999999998743
Q ss_pred -ccCchhcccC--CCCcEEEccCCcccccCCC-CCCCCCCcEEEccCccceeecC-ccccCCCCCcEEEccCCccccccC
Q 047676 327 -GAIPKEYQNL--VKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLNRNYLTGNIS-ESFYIYPNLTFIDLSHNNFYGEIS 401 (576)
Q Consensus 327 -~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~ 401 (576)
......+..+ +.|+.|++++|.+....+. +..+++|+.|++++|.+.+.++ ..+..+++|+.|++++|.+.....
T Consensus 368 ~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 447 (680)
T 1ziw_A 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447 (680)
T ss_dssp CEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT
T ss_pred hhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh
Confidence 2223334333 6899999999999877664 8889999999999999986544 788999999999999999988888
Q ss_pred cccCCCCCCCEEEccCCccc--ccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCC------
Q 047676 402 SDWGRCPKLDSLDFSTNNIT--GNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLS------ 473 (576)
Q Consensus 402 ~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~------ 473 (576)
..|..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+.+..+..+.++++|++|++++|.+.....
T Consensus 448 ~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 527 (680)
T 1ziw_A 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS
T ss_pred hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC
Confidence 88999999999999999876 4578889999999999999999998878889999999999999999876422
Q ss_pred --cccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCc-C
Q 047676 474 --PKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQIC-I 550 (576)
Q Consensus 474 --~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~ 550 (576)
..+.++++|++|++++|.++...+..|.++++|+.|++++|+++...+..|..+++|++|++++|.+++..+..+. .
T Consensus 528 ~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 607 (680)
T 1ziw_A 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607 (680)
T ss_dssp CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHH
T ss_pred cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccc
Confidence 2367899999999999999966666799999999999999999877777889999999999999999887777676 6
Q ss_pred CCCCceEeCcCCccccccC
Q 047676 551 MQSLEKLNLSHNSLSGVIP 569 (576)
Q Consensus 551 ~~~L~~L~l~~~~l~~~~p 569 (576)
+++|+.+++++|++...-+
T Consensus 608 ~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 608 FRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp HTTCSEEECTTCCCCBCCC
T ss_pred ccccCEEEccCCCcccCCc
Confidence 8999999999999876544
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.5e-52 Score=443.98 Aligned_cols=492 Identities=23% Similarity=0.243 Sum_probs=434.8
Q ss_pred CCEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEe
Q 047676 48 GRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLN 127 (576)
Q Consensus 48 ~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 127 (576)
..++.|+++++.+++..+. +|.++++|++|++++|.+.+..|++|.++++|++|++++|.+.+..|..|+++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 4799999999999876665 899999999999999999988899999999999999999999988899999999999999
Q ss_pred CCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccc--eeeccCCcC
Q 047676 128 LSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLS--RTALSHNKL 205 (576)
Q Consensus 128 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~ 205 (576)
+++|.+++..+..+.++++|++|++++|.+..+....+..+++|++|++++|.+++..+..+..+++|+ .+++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999976678899999999999999999886555566699999999999999987788899999999 899999999
Q ss_pred CCcCCccccCCCCCcEEEccCcccc--------------------------ccCCccccCCC--CCCEEEccCCCCcccC
Q 047676 206 SGSIPHSLGNLSNLVILFLDNNLLF--------------------------GLIPSELRNLK--SLYFLELGNNKLSGPI 257 (576)
Q Consensus 206 ~~~~~~~~~~l~~L~~L~l~~~~~~--------------------------~~~~~~l~~l~--~L~~L~l~~~~~~~~~ 257 (576)
.+..+..+. ...|+.|+++++... ...+..+..+. +|+.+++++|.+....
T Consensus 192 ~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 192 AGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred CccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 876666554 467888888876411 11122233222 7899999999999888
Q ss_pred CcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccC-chhcccC
Q 047676 258 PHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAI-PKEYQNL 336 (576)
Q Consensus 258 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l 336 (576)
+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+....+..+..+++|++|++++|.+.... +..+..+
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred HHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 888999999999999999998 67778899999999999999998777788899999999999999887544 4458899
Q ss_pred CCCcEEEccCCcccccC---CCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccC-cccCCCCCCCE
Q 047676 337 VKLTKLLLGNNQFQGPI---PNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEIS-SDWGRCPKLDS 412 (576)
Q Consensus 337 ~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~ 412 (576)
++|++|++++|.+.... ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|++
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 99999999999987653 348899999999999999999988999999999999999999986654 44889999999
Q ss_pred EEccCCcccccCCccccCCCCCCEEeCCCCccccc---CcccccCccCCceeecccccccccCCcccccCCCCCEeeCCC
Q 047676 413 LDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGE---IPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSS 489 (576)
Q Consensus 413 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~ 489 (576)
|++++|.+.+..+..+..+++|++|++++|++.+. .+..+..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence 99999999988888899999999999999998763 335788999999999999999988888899999999999999
Q ss_pred CcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCccc
Q 047676 490 NRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGRE 543 (576)
Q Consensus 490 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 543 (576)
|.+++..+..+..+++| .|++++|++++..|..+..+++|++|++++|++...
T Consensus 510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred CccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 99998899999999999 999999999988888899999999999999999764
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8e-53 Score=446.05 Aligned_cols=511 Identities=23% Similarity=0.215 Sum_probs=415.6
Q ss_pred CCEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEe
Q 047676 48 GRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLN 127 (576)
Q Consensus 48 ~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 127 (576)
.++++|+++++.+.+..+. +|.++++|++|++++|.+.+..+++|.++++|++|++++|.+.+..|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChh-hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 4688888888888765554 788888888888888888877777888888888888888888877788888888888888
Q ss_pred CCCCcCCCCCCcccCCCCCCCEEEccccccCcc-cCcccCCCCCCCEEEeecccCcccCCccccCCCccc----eeeccC
Q 047676 128 LSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGL-IPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLS----RTALSH 202 (576)
Q Consensus 128 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~~ 202 (576)
+++|.+.+..+..++++++|++|++++|.+... .|..+.++++|++|++++|.+++..+..+..+++|+ .+++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 888888766667788888888888888887753 477888888888888888888877777777666554 688888
Q ss_pred CcCCCcCCccccCCCCCcEEEccCcccc-ccCCccccCCCCCCEEEccCCCCcc------cCCcccCCCC--CccEEEc-
Q 047676 203 NKLSGSIPHSLGNLSNLVILFLDNNLLF-GLIPSELRNLKSLYFLELGNNKLSG------PIPHFFGNLT--NLGVLYI- 272 (576)
Q Consensus 203 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~l~~~~--~L~~L~l- 272 (576)
|.+.+..+..+.. .+|+.|++++|.+. ...+..+..++.|+.+++..+.+.. .....+..+. .++.+++
T Consensus 191 n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 191 NPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp CCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 8887554444443 47888888888765 3445667778888887775443321 1112222222 3556666
Q ss_pred cCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCccccc
Q 047676 273 YNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGP 352 (576)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 352 (576)
..+.+.+..+. +..+++|+.++++++.+... + .+..+++|++|++++|.+ ...| .+ .+++|+.|++++|.....
T Consensus 270 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 270 YTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred ccccccccccc-cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc
Confidence 55666666665 88899999999999988743 3 788899999999999999 4566 45 899999999999965544
Q ss_pred CCCCCCCCCCcEEEccCccceee--cCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCC-cccc
Q 047676 353 IPNLRNLTSLVRVRLNRNYLTGN--ISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIP-SEIG 429 (576)
Q Consensus 353 ~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~ 429 (576)
. .+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+... +..+..+++|++|++++|++.+..+ ..+.
T Consensus 344 ~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 344 F-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp C-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred h-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 3 567899999999999998876 377888999999999999998754 4788899999999999999987766 6788
Q ss_pred CCCCCCEEeCCCCcccccCcccccCccCCceeecccccccc-cCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCE
Q 047676 430 YSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSG-QLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHY 508 (576)
Q Consensus 430 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~ 508 (576)
.+++|++|++++|.+.+..+..+.++++|++|++++|.+.+ ..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence 99999999999999998888899999999999999999987 36778899999999999999999888888999999999
Q ss_pred eeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCC-CCceEeCcCCccccccC
Q 047676 509 LNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQ-SLEKLNLSHNSLSGVIP 569 (576)
Q Consensus 509 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~l~~~~p 569 (576)
|++++|++++..|..+..+++|++|++++|+++ .+|..+..++ +|++|++++|++....|
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999999999888999999999999999999996 5666688886 69999999999986555
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7e-51 Score=431.15 Aligned_cols=511 Identities=21% Similarity=0.185 Sum_probs=433.4
Q ss_pred EEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCC
Q 047676 51 NSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSK 130 (576)
Q Consensus 51 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 130 (576)
+++++++.+++. +|. .+. +++++|++++|.+.+..+.+|.++++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 14 ~~~~c~~~~l~~-ip~-~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 14 ITYQCMDQKLSK-VPD-DIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TEEECTTSCCSS-CCT-TSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEccCCCccc-CCC-CCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 357777777763 444 222 7899999999999988888999999999999999999988888999999999999999
Q ss_pred CcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcc-cCCccccCCCccceeeccCCcCCCcC
Q 047676 131 NKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSG-SIPSEIGNLKFLSRTALSHNKLSGSI 209 (576)
Q Consensus 131 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~ 209 (576)
|.+++..|..|.++++|++|++++|.+....+..+.++++|++|++++|.+.+ ..|..+.++++|+.|++++|.+++..
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 99997779999999999999999999998888889999999999999999986 56889999999999999999999877
Q ss_pred CccccCCCCCc----EEEccCccccccCCccccCCCCCCEEEccCCCCc-ccCCcccCCCCCccEEEccCCcccc-----
Q 047676 210 PHSLGNLSNLV----ILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLS-GPIPHFFGNLTNLGVLYIYNNLLSG----- 279 (576)
Q Consensus 210 ~~~~~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~----- 279 (576)
+..+..+.+|+ ++++++|.++...+..+... +|+.|++++|.+. ...+..+..++.++.+++....+..
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 77777766654 89999999988877766655 8999999999875 3455667788888888876543321
Q ss_pred -cccccccCCC--CCCeEEc-ccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCC
Q 047676 280 -SIPCEIGNLK--FLSELNL-GFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN 355 (576)
Q Consensus 280 -~~~~~~~~l~--~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 355 (576)
..+..+..+. .++.+++ ..+.+....+. +..+++|+.+++.++.+.. .+ .+..+++|++|++++|.+ ..++.
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~ 324 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPT 324 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCC
T ss_pred ccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-ccccc
Confidence 1111222222 3556666 44566655554 8889999999999999864 44 788899999999999999 55666
Q ss_pred CCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccc--cCcccCCCCCCCEEEccCCcccccCCccccCCCC
Q 047676 356 LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGE--ISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQ 433 (576)
Q Consensus 356 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 433 (576)
+ .+++|+.|++.+|...... .+..+++|+.|++++|.+... .+..+..+++|++|++++|.+.+ ++..+..+++
T Consensus 325 ~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~ 400 (606)
T 3vq2_A 325 L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEE 400 (606)
T ss_dssp C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTT
T ss_pred C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCC
Confidence 7 9999999999999655443 677899999999999998765 36778899999999999999884 5688899999
Q ss_pred CCEEeCCCCcccccCc-ccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCcc-ccchhccCCCCCCEeeC
Q 047676 434 LEVLDLSSNHIVGEIP-TELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSN-SIPESLGNLVKLHYLNL 511 (576)
Q Consensus 434 L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~-~~~~~~~~l~~L~~L~l 511 (576)
|+.|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+++ ..|..+..+++|++|++
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 480 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEEC
Confidence 9999999999987776 688999999999999999998888889999999999999999987 47888999999999999
Q ss_pred CCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCccccccCcccccc
Q 047676 512 SNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPRCFEEM 575 (576)
Q Consensus 512 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~~~~~ 575 (576)
++|++++..|..+..+++|++|++++|++.+..|..+..+++|++|++++|+++ .+|..|..+
T Consensus 481 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l 543 (606)
T 3vq2_A 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHF 543 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGS
T ss_pred CCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhh
Confidence 999999888899999999999999999999988999999999999999999998 677666654
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-49 Score=432.82 Aligned_cols=514 Identities=23% Similarity=0.211 Sum_probs=422.9
Q ss_pred CccceeeeCCCCCEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccC-CccccCCCCCcEEECcCCcCCCCCCc
Q 047676 37 CAWVGIHCNHGGRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNI-PPQIGNISKLKYLDLSSNSFFGAIPP 115 (576)
Q Consensus 37 ~~~~~~~c~~~~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~ 115 (576)
+.|..+.+ ...++++|+++++.+.+..+. .|.++++|++|++++|...+.+ +++|.++++|++|++++|.+.+..|.
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45666666 557899999999999876666 8999999999999999654444 78899999999999999999988899
Q ss_pred cccCCCCCCEEeCCCCcCCCCCCcc--cCCCCCCCEEEccccccCcccC-cccCCCCCCCEEEeecccCcccCCccccCC
Q 047676 116 QIGHLSYLKTLNLSKNKLSGSIPLE--VGRLSSLNNLTLYANCLEGLIP-HSLGNLTNLAILYLYNNSLSGSIPSEIGNL 192 (576)
Q Consensus 116 ~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 192 (576)
.|.++++|++|++++|.+.+..|.. +..+++|++|++++|.+....+ ..+.++++|++|++++|.+++..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999998756654 8999999999999999887654 578999999999999999988888888777
Q ss_pred --CccceeeccCCcCCCcCCccccCCCC------CcEEEccCccccccCCccccC---CCCCCEEEccCCC---------
Q 047676 193 --KFLSRTALSHNKLSGSIPHSLGNLSN------LVILFLDNNLLFGLIPSELRN---LKSLYFLELGNNK--------- 252 (576)
Q Consensus 193 --~~L~~L~l~~~~~~~~~~~~~~~l~~------L~~L~l~~~~~~~~~~~~l~~---l~~L~~L~l~~~~--------- 252 (576)
++|+.|++++|.+.+..+..+..+++ |+.|++++|.+....+..+.. ...++.+.+..+.
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 88999999999998877777766665 999999999877666655543 2567788776332
Q ss_pred CcccCCcccCCC--CCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCc
Q 047676 253 LSGPIPHFFGNL--TNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIP 330 (576)
Q Consensus 253 ~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 330 (576)
+.......|.++ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 222333344443 689999999999888878888999999999999999988878888999999999999999988888
Q ss_pred hhcccCCCCcEEEccCCcccccCCC-CCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCC
Q 047676 331 KEYQNLVKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPK 409 (576)
Q Consensus 331 ~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 409 (576)
..+..+++|+.|++++|.+....+. +..+++|+.|++++|.++.. ..+++|+.|++++|.+... + ....+
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l-~---~~~~~ 402 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTL-P---KINLT 402 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCC-C---CCCTT
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccc-c---ccccc
Confidence 8899999999999999988766554 78899999999999988743 3388999999999988743 2 23578
Q ss_pred CCEEEccCCcccccC-CccccCCCCCCEEeCCCCcccccCcc-cccCccCCceeecccccccc-----cCCcccccCCCC
Q 047676 410 LDSLDFSTNNITGNI-PSEIGYSSQLEVLDLSSNHIVGEIPT-ELGKLSFFIKLILAQNQLSG-----QLSPKLGLLVQL 482 (576)
Q Consensus 410 L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~~L 482 (576)
++.|++++|++.+.. +..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.. ..+..+..+++|
T Consensus 403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L 482 (844)
T 3j0a_A 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482 (844)
T ss_dssp CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE
T ss_pred cceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccc
Confidence 999999999987542 22356889999999999998755432 45668899999999998863 334567788999
Q ss_pred CEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCC
Q 047676 483 EHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHN 562 (576)
Q Consensus 483 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 562 (576)
++|++++|.+++..+..+.++++|+.|++++|++++..+..+. ++|+.|++++|++++..|..+ .+|+.+++++|
T Consensus 483 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~N 557 (844)
T 3j0a_A 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHN 557 (844)
T ss_dssp ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEE
T ss_pred cEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCC
Confidence 9999999999988888899999999999999999877666665 799999999999988887765 47889999999
Q ss_pred cccc
Q 047676 563 SLSG 566 (576)
Q Consensus 563 ~l~~ 566 (576)
++..
T Consensus 558 p~~C 561 (844)
T 3j0a_A 558 KFIC 561 (844)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 8765
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.7e-49 Score=427.90 Aligned_cols=509 Identities=21% Similarity=0.199 Sum_probs=428.1
Q ss_pred EEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCC-CccccCCCCCCEEeCC
Q 047676 51 NSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAI-PPQIGHLSYLKTLNLS 129 (576)
Q Consensus 51 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~ 129 (576)
+..++++++++. +|. -.+++++|++++|.+.+..+.+|.++++|++|++++|...+.+ |..|.++++|++|+++
T Consensus 7 ~~~dcs~~~L~~-vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSC-CCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCC-CCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 445666777664 333 3478999999999999888899999999999999999655444 8889999999999999
Q ss_pred CCcCCCCCCcccCCCCCCCEEEccccccCcccCc--ccCCCCCCCEEEeecccCcccCC-ccccCCCccceeeccCCcCC
Q 047676 130 KNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPH--SLGNLTNLAILYLYNNSLSGSIP-SEIGNLKFLSRTALSHNKLS 206 (576)
Q Consensus 130 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~ 206 (576)
+|.+.+..|..|.++++|++|++++|.+.+..+. .+.++++|++|++++|.+++..+ ..+.++++|+.|++++|.+.
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 9999988899999999999999999999875444 48999999999999999986544 57899999999999999999
Q ss_pred CcCCccccCC--CCCcEEEccCccccccCCccccCCCC------CCEEEccCCCCcccCCcccCC---CCCccEEEccCC
Q 047676 207 GSIPHSLGNL--SNLVILFLDNNLLFGLIPSELRNLKS------LYFLELGNNKLSGPIPHFFGN---LTNLGVLYIYNN 275 (576)
Q Consensus 207 ~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~l~~~ 275 (576)
+..+..+..+ ++|+.|++++|.+....+..+..+++ |+.|++++|.+....+..+.. ...++.+.+..+
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 8888888877 89999999999998877777766665 999999999887655555432 356888887643
Q ss_pred cc---------cccccccccCC--CCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEc
Q 047676 276 LL---------SGSIPCEIGNL--KFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLL 344 (576)
Q Consensus 276 ~~---------~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 344 (576)
.. .......+..+ ++|+.|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|++|++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 22 22223334443 78999999999998888888999999999999999999888889999999999999
Q ss_pred cCCcccccCCC-CCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCccccc
Q 047676 345 GNNQFQGPIPN-LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGN 423 (576)
Q Consensus 345 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 423 (576)
++|.+....+. +..+++|+.|++++|.+.......|..+++|+.|++++|.+... ..+++|+.|++++|++. .
T Consensus 322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~ 395 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-T 395 (844)
T ss_dssp ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-C
T ss_pred CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-c
Confidence 99999876554 88999999999999999988888899999999999999988743 34899999999999998 4
Q ss_pred CCccccCCCCCCEEeCCCCcccccCc-ccccCccCCceeecccccccccCCc-ccccCCCCCEeeCCCCcCcc-----cc
Q 047676 424 IPSEIGYSSQLEVLDLSSNHIVGEIP-TELGKLSFFIKLILAQNQLSGQLSP-KLGLLVQLEHLDLSSNRLSN-----SI 496 (576)
Q Consensus 424 ~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~ls~~~~~~-----~~ 496 (576)
++.. ..+++.|++++|.+.+... ..+.++++|+.|++++|.+...... .+..+++|+.|++++|.+.. ..
T Consensus 396 l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 396 LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc
Confidence 4443 5689999999999876432 3456899999999999998864332 45668999999999999863 33
Q ss_pred chhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCccccccCcccccc
Q 047676 497 PESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPRCFEEM 575 (576)
Q Consensus 497 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~~~~~ 575 (576)
+..+.++++|+.|++++|++++..+..|..+++|++|++++|.+++..+..+. ++|+.|++++|.+++..|+.|.+|
T Consensus 473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L 549 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSL 549 (844)
T ss_dssp SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSC
T ss_pred hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCc
Confidence 45688899999999999999988888999999999999999999877666555 899999999999999999988765
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.7e-49 Score=412.09 Aligned_cols=491 Identities=24% Similarity=0.214 Sum_probs=327.8
Q ss_pred CCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEc
Q 047676 73 PHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTL 152 (576)
Q Consensus 73 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 152 (576)
++++.|++++|.+.+..+.+|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 35667777777666555556666777777777777666555566666777777777777666555566667777777777
Q ss_pred cccccCcccCcccCCCCCCCEEEeecccCcc-cCCccccCCCccceeeccCCcCCCcCCccccCCCCC----cEEEccCc
Q 047676 153 YANCLEGLIPHSLGNLTNLAILYLYNNSLSG-SIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNL----VILFLDNN 227 (576)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~ 227 (576)
++|.+..+.+..+.++++|++|++++|.++. ..|..+.++++|+.|++++|.+.+..+..+..+.+| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 7766666655556667777777777766654 346666666777777777666665555556556555 66677776
Q ss_pred cccccCCccccCCCCCCEEEccCCCCcc-cCCcccCCCCCccEEEccCCcc------cccccccccCCCC--CCeEEccc
Q 047676 228 LLFGLIPSELRNLKSLYFLELGNNKLSG-PIPHFFGNLTNLGVLYIYNNLL------SGSIPCEIGNLKF--LSELNLGF 298 (576)
Q Consensus 228 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~------~~~~~~~~~~l~~--L~~L~L~~ 298 (576)
.+....+..+... +|+.+++++|.... ..+..+..++.++...+....+ .......+..+++ ++.+++.+
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 6666665555544 56666666653211 1122233344444443322111 1111112222222 34455555
Q ss_pred c-cccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecC
Q 047676 299 N-KLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNIS 377 (576)
Q Consensus 299 ~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 377 (576)
+ .+....+..+..+++|++++++++.+. ..|..+..+ +|++|++++|.+... +. ..+++|+.|++.++.+.....
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l-~~-~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQF-PT-LKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSC-CB-CBCSSCCEEEEESCBSCCBCC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccccc-Cc-ccccccCEEeCcCCccccccc
Confidence 4 445555566666777777777777766 355556666 777777777776622 22 456777778877777665443
Q ss_pred ccccCCCCCcEEEccCCcccccc--CcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCc-ccccC
Q 047676 378 ESFYIYPNLTFIDLSHNNFYGEI--SSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIP-TELGK 454 (576)
Q Consensus 378 ~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~ 454 (576)
. ..+++|+.|++++|.+.... +..+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+..+ ..+..
T Consensus 343 ~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 343 E--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp C--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred c--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhc
Confidence 3 56788888888888776443 4556778888888888888774433 37788888888888888776554 46778
Q ss_pred ccCCceeecccccccccCCcccccCCCCCEeeCCCCcCc-cccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEE
Q 047676 455 LSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLS-NSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSEL 533 (576)
Q Consensus 455 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 533 (576)
+++|++|++++|.+....+..+.++++|++|++++|.+. +..|..+..+++|++|++++|++++..|..+..+++|++|
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 888888888888887777777788888888888888876 4567778888888888888888887777788888888888
Q ss_pred eCCCCcCcccCCccCcCCCCCceEeCcCCccccccCcc
Q 047676 534 DLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPRC 571 (576)
Q Consensus 534 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~ 571 (576)
++++|.+.+..+..+..+++|++|++++|++++..|..
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 88888887777777888888888888888888777753
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.2e-50 Score=424.28 Aligned_cols=487 Identities=22% Similarity=0.282 Sum_probs=254.5
Q ss_pred hHHHHHHHHHhhcCCCCCCCCC-------CCCCCCCCCCCCCCcc---ceeeeCCCCCEEEEEcCCCCcccccCCcccCC
Q 047676 2 EESHALLRWKTSLQNHNNGSSL-------SSWTVNNVTKIGPCAW---VGIHCNHGGRVNSINLTNIGLKGTLHDFSFSS 71 (576)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~c~~~~~i~~l~l~~~~~~~~~~~~~~~~ 71 (576)
+|+.||.+++.+++.++ |... .+|+ ...++|.| .||.|+..++|++|+++++++.|.++. ++.+
T Consensus 30 ~d~~aL~~~~~~~~~~~-w~~~~~~~~~~~~W~----~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~-~l~~ 103 (636)
T 4eco_A 30 KDYLALKEIWDALNGKN-WSQQGFGTQPGANWN----FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-AIGQ 103 (636)
T ss_dssp HHHHHHHHHHHHTTGGG-CCCCC------CCCC----CSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG-GGGG
T ss_pred HHHHHHHHHHHHcCCCC-cccCCcCCccCCCCC----CCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh-HHhc
Confidence 58899999999998763 4322 3797 56889999 999999889999999999999999997 9999
Q ss_pred CCCCCEEECCCCCCc------c------cCCccccCCCCCcEEECcCCcCCCCCCccccCC-------------------
Q 047676 72 FPHLAYLDLWSNQLF------G------NIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHL------------------- 120 (576)
Q Consensus 72 ~~~L~~L~l~~~~~~------~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l------------------- 120 (576)
+++|++|++++|.+. + .+|... +.+|| ++++++.+.+..|..+..+
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 180 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCC
T ss_pred CccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccc
Confidence 999999999999651 1 222222 44556 6666666555555444311
Q ss_pred CCCCEEeCC--CCcCCCCCCcccCCCCCCCEEEccccccCcc-----------------cCcccC--CCCCCCEEEeecc
Q 047676 121 SYLKTLNLS--KNKLSGSIPLEVGRLSSLNNLTLYANCLEGL-----------------IPHSLG--NLTNLAILYLYNN 179 (576)
Q Consensus 121 ~~L~~L~l~--~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~ 179 (576)
..++.+.+. +|.+++ +|..++++++|++|++++|.+.+. .|..+. ++++|++|++++|
T Consensus 181 ~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n 259 (636)
T 4eco_A 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259 (636)
T ss_dssp CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC
T ss_pred cchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC
Confidence 111111111 234443 444555555555555555554442 344444 4444444444444
Q ss_pred cCcccCCccccCCCccceeeccCCc-CCC-cCCccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccC
Q 047676 180 SLSGSIPSEIGNLKFLSRTALSHNK-LSG-SIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPI 257 (576)
Q Consensus 180 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 257 (576)
.+.+..|..+.++++|+.|++++|. +++ .+|..+..+. .+..+++|+.|++++|.+. ..
T Consensus 260 ~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~------------------~~~~l~~L~~L~L~~n~l~-~i 320 (636)
T 4eco_A 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA------------------DAPVGEKIQIIYIGYNNLK-TF 320 (636)
T ss_dssp TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHH------------------HSGGGGTCCEEECCSSCCS-SC
T ss_pred cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhh------------------ccccCCCCCEEECCCCcCC-cc
Confidence 4444444444444444444444444 333 3333333320 0001144444444444444 22
Q ss_pred Cc--ccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCC-CcEEEcccCcccccCchhcc
Q 047676 258 PH--FFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTN-LVFLSFYQNSLSGAIPKEYQ 334 (576)
Q Consensus 258 ~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~ 334 (576)
+. .+..+++|++|++++|.+.+.+| .+..+++|+.|++++|.+. ..+..+..+++ |++|++++|.+. ..|..+.
T Consensus 321 p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~ 397 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFD 397 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCC
T ss_pred CchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhh
Confidence 32 33444444444444444443333 3344444444444444443 22333333333 444444444433 2233332
Q ss_pred cC--CCCcEEEccCCcccccCCC-CC-------CCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCccc
Q 047676 335 NL--VKLTKLLLGNNQFQGPIPN-LR-------NLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDW 404 (576)
Q Consensus 335 ~l--~~L~~L~l~~~~~~~~~~~-~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 404 (576)
.. ++|+.|++++|.+....|. +. .+++|+.|++++|.++......+..+++|+.|++++|.+.......+
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence 22 2444444444444333222 22 33445555555554443333334445555555555555442222222
Q ss_pred CC-------CCCCCEEEccCCcccccCCcccc--CCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcc
Q 047676 405 GR-------CPKLDSLDFSTNNITGNIPSEIG--YSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPK 475 (576)
Q Consensus 405 ~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 475 (576)
.. +++|++|++++|++. .+|..+. .+++|+.|++++|++.+ .|..+..+++|+.|++++|+
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~-------- 547 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR-------- 547 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB--------
T ss_pred ccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc--------
Confidence 11 124555555555444 3344333 44455555555554443 34444444444444444332
Q ss_pred cccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCccc
Q 047676 476 LGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGRE 543 (576)
Q Consensus 476 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 543 (576)
++++|.+.+..|..+..+++|++|++++|++ +.+|..+. ++|++|++++|++...
T Consensus 548 ----------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 548 ----------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp ----------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred ----------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 2255666667777777788888888888888 45565544 6888888888877543
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.3e-48 Score=416.73 Aligned_cols=502 Identities=20% Similarity=0.237 Sum_probs=302.6
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCCCCCCCC-CCCCCC--Ccc------------ceeeeCCCCCEEEEEcCCCCcccccCC
Q 047676 2 EESHALLRWKTSLQNHNNGSSLSSWTVNN-VTKIGP--CAW------------VGIHCNHGGRVNSINLTNIGLKGTLHD 66 (576)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~------------~~~~c~~~~~i~~l~l~~~~~~~~~~~ 66 (576)
+|+.+|++||.+++++ +|+.+. ....++ |.| .||.|+..++|++|+++++++.|.+++
T Consensus 269 ~d~~ALl~~k~~l~~~-------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~ 341 (876)
T 4ecn_A 269 KDYKALKAIWEALDGK-------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD 341 (876)
T ss_dssp HHHHHHHHHHHHTTGG-------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECG
T ss_pred HHHHHHHHHHHHcCCC-------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCch
Confidence 5889999999999765 464111 012345 999 999999889999999999999999998
Q ss_pred cccCCCCCCCEEEC-CCCCCcccCCccccCC-CCCcE-----E---------EC-cCCcCC-----------CCCCcccc
Q 047676 67 FSFSSFPHLAYLDL-WSNQLFGNIPPQIGNI-SKLKY-----L---------DL-SSNSFF-----------GAIPPQIG 118 (576)
Q Consensus 67 ~~~~~~~~L~~L~l-~~~~~~~~~~~~~~~l-~~L~~-----L---------~l-~~~~~~-----------~~~~~~~~ 118 (576)
.+.++++|++|+| ++|.+.+..+-..... ..+.. + .. ....+. ...+....
T Consensus 342 -~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~ 420 (876)
T 4ecn_A 342 -AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420 (876)
T ss_dssp -GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred -HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence 9999999999999 8887665422110000 00000 0 00 000000 00000111
Q ss_pred CCCCCCEEeCCC--CcCCCCCCcccCCCCCCCEEEccccccCc-----------------ccCcccC--CCCCCCEEEee
Q 047676 119 HLSYLKTLNLSK--NKLSGSIPLEVGRLSSLNNLTLYANCLEG-----------------LIPHSLG--NLTNLAILYLY 177 (576)
Q Consensus 119 ~l~~L~~L~l~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~ 177 (576)
....++.+.+.. |.+++ +|..+.++++|++|++++|.+.. ..|..+. ++++|++|+++
T Consensus 421 ~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls 499 (876)
T 4ecn_A 421 SRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499 (876)
T ss_dssp CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred cccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence 223344444433 56664 77788888888888888888776 2455655 77777777777
Q ss_pred cccCcccCCccccCCCccceeeccCCc-CCC-cCCccccCCC-------CCcEEEccCccccccCCc--cccCCCCCCEE
Q 047676 178 NNSLSGSIPSEIGNLKFLSRTALSHNK-LSG-SIPHSLGNLS-------NLVILFLDNNLLFGLIPS--ELRNLKSLYFL 246 (576)
Q Consensus 178 ~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L 246 (576)
+|.+.+..|..+.++++|+.|++++|. +++ .+|..+..++ +|+.|++++|.+. ..|. .+..+++|+.|
T Consensus 500 ~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLL 578 (876)
T ss_dssp SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEE
T ss_pred CCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEE
Confidence 777766777777777777777777776 655 4555444433 6666666666666 3444 56666666666
Q ss_pred EccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCC-CCeEEcccccccccCCccccCCCCCcEEEcccCcc
Q 047676 247 ELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKF-LSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSL 325 (576)
Q Consensus 247 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 325 (576)
++++|.+. ..+ .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. ..+..+..++.
T Consensus 579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~----------- 643 (876)
T 4ecn_A 579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV----------- 643 (876)
T ss_dssp ECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS-----------
T ss_pred ECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcccc-----------
Confidence 66666665 333 5556666666666666665 45555555555 666666655554 23333322221
Q ss_pred cccCchhcccCCCCcEEEccCCcccccCCCCC------CCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccc
Q 047676 326 SGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLR------NLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGE 399 (576)
Q Consensus 326 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 399 (576)
++|+.|++++|.+....+.+. ..++|+.|++++|.+.......+..+++|+.|++++|.+...
T Consensus 644 -----------~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~i 712 (876)
T 4ecn_A 644 -----------YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712 (876)
T ss_dssp -----------SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCC
T ss_pred -----------CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCcc
Confidence 225555555554443332211 334666666666666644333444666777777777666533
Q ss_pred cCcccC-------CCCCCCEEEccCCcccccCCcccc--CCCCCCEEeCCCCcccccCcccccCccCCceeecccccccc
Q 047676 400 ISSDWG-------RCPKLDSLDFSTNNITGNIPSEIG--YSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSG 470 (576)
Q Consensus 400 ~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 470 (576)
....+. +|++|+.|++++|++. .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++|+
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~--- 787 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR--- 787 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB---
T ss_pred ChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC---
Confidence 222222 2236666777666666 4555554 66666666666666664 45555666666666666544
Q ss_pred cCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcC
Q 047676 471 QLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICI 550 (576)
Q Consensus 471 ~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 550 (576)
++++|.+.+..|..+..+++|+.|++++|++ +.+|..+. ++|+.|++++|++....+..++.
T Consensus 788 ---------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 788 ---------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp ---------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHH
T ss_pred ---------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccc
Confidence 3445666667777777778888888888887 56665544 57888888888776655554444
Q ss_pred CCCCceEeCcCC
Q 047676 551 MQSLEKLNLSHN 562 (576)
Q Consensus 551 ~~~L~~L~l~~~ 562 (576)
...+..+.+.++
T Consensus 850 ~~~~~~~~L~~n 861 (876)
T 4ecn_A 850 YIEAGMYVLLYD 861 (876)
T ss_dssp HHHTTCCEEECC
T ss_pred cccchheeecCC
Confidence 333333434433
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.6e-47 Score=397.24 Aligned_cols=491 Identities=22% Similarity=0.213 Sum_probs=413.6
Q ss_pred CCCEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEE
Q 047676 47 GGRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTL 126 (576)
Q Consensus 47 ~~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 126 (576)
...+++|+++++.+.+..+. +|.++++|++|++++|.+.+..+++|.++++|++|++++|.+.+..|..|+++++|++|
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp CSSCCEEECCSCCCCEECTT-TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred cccccEEEccCCccCccChh-HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 34799999999999876555 89999999999999999988888899999999999999999987788899999999999
Q ss_pred eCCCCcCCCCCCcccCCCCCCCEEEccccccCcc-cCcccCCCCCCCEEEeecccCcccCCccccCCCcc----ceeecc
Q 047676 127 NLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGL-IPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFL----SRTALS 201 (576)
Q Consensus 127 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~ 201 (576)
++++|.++...+..++++++|++|++++|.+... .|..+.++++|++|++++|.+++..+..+..+++| +.++++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 9999999865555799999999999999998874 58889999999999999999988777888888888 899999
Q ss_pred CCcCCCcCCccccCCCCCcEEEccCcccc-ccCCccccCCCCCCEEEccCCCC------cccCCcccCCCC--CccEEEc
Q 047676 202 HNKLSGSIPHSLGNLSNLVILFLDNNLLF-GLIPSELRNLKSLYFLELGNNKL------SGPIPHFFGNLT--NLGVLYI 272 (576)
Q Consensus 202 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~------~~~~~~~l~~~~--~L~~L~l 272 (576)
+|.+.+..+..+... +|+.|+++++... ...+..+..++.++...+....+ .......+..++ .++.+++
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 999987777766655 8999999887432 12234566777777665543222 222223333333 3566777
Q ss_pred cCC-cccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccc
Q 047676 273 YNN-LLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQG 351 (576)
Q Consensus 273 ~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 351 (576)
.++ .+.+..+..+..+++|+.++++++.+. ..+..+..+ +|++|++++|.+. ..|. ..+++|+.|++++|....
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccc
Confidence 766 566677788889999999999999887 456667777 9999999999987 3343 478899999999998876
Q ss_pred cCCCCCCCCCCcEEEccCccceeec--CccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCC-ccc
Q 047676 352 PIPNLRNLTSLVRVRLNRNYLTGNI--SESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIP-SEI 428 (576)
Q Consensus 352 ~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~ 428 (576)
..+. ..+++|+.|++++|.+.... +..+..+++|+.|++++|.+...... +..+++|++|++++|.+.+..+ ..+
T Consensus 340 ~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 340 AFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp BCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTT
T ss_pred cccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhh
Confidence 5554 78899999999999988654 56778899999999999998865544 8899999999999999986655 568
Q ss_pred cCCCCCCEEeCCCCcccccCcccccCccCCceeeccccccc-ccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCC
Q 047676 429 GYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLS-GQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLH 507 (576)
Q Consensus 429 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~ 507 (576)
..+++|++|++++|.+.+..+..+.++++|++|++++|.+. ...+..+..+++|++|++++|.+++..|..+..+++|+
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 89999999999999998888889999999999999999987 35677889999999999999999988888999999999
Q ss_pred EeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCc
Q 047676 508 YLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPS 546 (576)
Q Consensus 508 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 546 (576)
+|++++|++++..+..+..+++|++|++++|++.+..|.
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999999988888899999999999999999876553
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.8e-46 Score=391.25 Aligned_cols=487 Identities=22% Similarity=0.171 Sum_probs=331.0
Q ss_pred CCccceeeeCCCCCEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCc
Q 047676 36 PCAWVGIHCNHGGRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPP 115 (576)
Q Consensus 36 ~~~~~~~~c~~~~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 115 (576)
.|.|.++ |+. ++++++ .+|. .+ .+++++|++++|.+.+..+.+|.++++|++|++++|.+.+..|.
T Consensus 3 ~C~~~~~-c~~---------~~~~l~-~ip~-~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDG---------RSRSFT-SIPS-GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EEC---------TTSCCS-SCCS-CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EEC---------CCCccc-cccc-cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 3889887 743 344444 3444 22 27899999999999888888899999999999999999877888
Q ss_pred cccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcc-cCcccCCCCCCCEEEeeccc-CcccCCccccCCC
Q 047676 116 QIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGL-IPHSLGNLTNLAILYLYNNS-LSGSIPSEIGNLK 193 (576)
Q Consensus 116 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~ 193 (576)
.|.++++|++|++++|.+.+..|..++.+++|++|++++|.+... .+..+.++++|++|++++|. +....+..+..++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 899999999999999999976666799999999999999998864 45688999999999999998 4444446788999
Q ss_pred ccceeeccCCcCCCcCCccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccC---CcccCCCCCccEE
Q 047676 194 FLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPI---PHFFGNLTNLGVL 270 (576)
Q Consensus 194 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L 270 (576)
+|+.|++++|.+.+..|..+..+++|++|+++++.+.......+..+++|+.|++++|.+.... ......+++|+.|
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 9999999999998888888999999999999988876544444467889999999999887532 1223456788888
Q ss_pred EccCCccccccc----ccccCCCCCCeEEcccccccccCC------ccccCCCCCcEEEcccCccccc-----Cchhccc
Q 047676 271 YIYNNLLSGSIP----CEIGNLKFLSELNLGFNKLSNSIP------VSLSNLTNLVFLSFYQNSLSGA-----IPKEYQN 335 (576)
Q Consensus 271 ~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~ 335 (576)
+++++.+.+..+ ..+..+++|+.+++++|.+..... ..+..+++++.+.+.++.+... .+..+..
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence 888887765333 233556788888888876653211 1223445555555555443211 0111122
Q ss_pred CCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccC---cccCCCCCCCE
Q 047676 336 LVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEIS---SDWGRCPKLDS 412 (576)
Q Consensus 336 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~ 412 (576)
.++|+.+++++|.+.......+..+++|+.|++++|.+.+..+ ..+..+++|++
T Consensus 309 -----------------------~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~ 365 (549)
T 2z81_A 309 -----------------------LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365 (549)
T ss_dssp -----------------------STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCE
T ss_pred -----------------------cccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcE
Confidence 2345555555555543322223456666666666666554321 23455666666
Q ss_pred EEccCCcccccCC--ccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCC
Q 047676 413 LDFSTNNITGNIP--SEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSN 490 (576)
Q Consensus 413 L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~ 490 (576)
|++++|++.+..+ ..+..+++|++|++++|++. .+|..+..+++|++|++++|.+..... .+ .++|++|++++|
T Consensus 366 L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~-~~--~~~L~~L~Ls~N 441 (549)
T 2z81_A 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKT-CI--PQTLEVLDVSNN 441 (549)
T ss_dssp EECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCT-TS--CTTCSEEECCSS
T ss_pred EEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccc-hh--cCCceEEECCCC
Confidence 6666666653321 33556666666666666665 445556666666666666666553211 11 256777777777
Q ss_pred cCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCccccccC
Q 047676 491 RLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIP 569 (576)
Q Consensus 491 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p 569 (576)
.+++. ...+++|++|++++|+++ .+|. ...+++|++|++++|++++..|..+..+++|+.|++++|++++..|
T Consensus 442 ~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 442 NLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred Chhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 76643 245667777777777775 3443 3456777777777777766666666777777777777777766555
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.5e-42 Score=368.41 Aligned_cols=509 Identities=24% Similarity=0.224 Sum_probs=340.8
Q ss_pred CEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeC
Q 047676 49 RVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNL 128 (576)
Q Consensus 49 ~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 128 (576)
.+++|++++|.+++. +..+|.++++|++|+|++|.+.+..+++|.++++|++|+|++|++.+..+..|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 456666666665533 2225666666666666666665555555666666666666666655444445566666666666
Q ss_pred CCCcCCCCCCcccCCCCCCCEEEccccccCcc-cCcccCCCCCCCEEEeecccCcccCCccccCCCccc----eeeccCC
Q 047676 129 SKNKLSGSIPLEVGRLSSLNNLTLYANCLEGL-IPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLS----RTALSHN 203 (576)
Q Consensus 129 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~~~ 203 (576)
++|.+++..+..|+++++|++|++++|.+... .+..+..+++|++|++++|.+++..+..+..+.+++ .++++.+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 66666544444556666666666666655443 344555566666666666665554444444333322 3445555
Q ss_pred cCCCcCCccccCCCCCcEEEccCcccc-ccCCccccCCCCCCEEEccCCC------CcccCCcccCCCCCccEEEccCCc
Q 047676 204 KLSGSIPHSLGNLSNLVILFLDNNLLF-GLIPSELRNLKSLYFLELGNNK------LSGPIPHFFGNLTNLGVLYIYNNL 276 (576)
Q Consensus 204 ~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~------~~~~~~~~l~~~~~L~~L~l~~~~ 276 (576)
.+....+. ......++.+++.++... ...+..+..++.++...+..+. +.......+.....+....+..+.
T Consensus 212 ~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 212 PMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred cccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 54422222 222233445555444322 1112234445555544443221 111222233334444444443332
Q ss_pred cc---ccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccC
Q 047676 277 LS---GSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPI 353 (576)
Q Consensus 277 ~~---~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 353 (576)
.. ......+....+++.+.+.++.+... ..+.....++.+++.++.+..... ..++.|+.+.+..+.....
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~- 364 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA- 364 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB-
T ss_pred hcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC-
Confidence 21 12233445567888888888766543 235566789999999888764433 3467888899888876543
Q ss_pred CCCCCCCCCcEEEccCcccee--ecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCC-ccccC
Q 047676 354 PNLRNLTSLVRVRLNRNYLTG--NISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIP-SEIGY 430 (576)
Q Consensus 354 ~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~ 430 (576)
.....+++|+.++++.+.+.. .....+..+++|+.+++..+.... ....+..+++|+.+++..+......+ ..+..
T Consensus 365 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 365 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccc
Confidence 335578899999999987754 345556678899999999988764 34567889999999999887765433 46788
Q ss_pred CCCCCEEeCCCCcccccCcccccCccCCceeecccccccc-cCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEe
Q 047676 431 SSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSG-QLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYL 509 (576)
Q Consensus 431 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L 509 (576)
+++++.++++.|.+.+..+..+..++.|+.|++++|.+.. ..+..+..+++|++|++++|.+++..|..|.++++|++|
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 9999999999999988888889999999999999997543 466778899999999999999998888999999999999
Q ss_pred eCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCC-CCCceEeCcCCcccc
Q 047676 510 NLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIM-QSLEKLNLSHNSLSG 566 (576)
Q Consensus 510 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~ 566 (576)
+|++|++++..+..|..+++|++|++++|++++..|..+..+ ++|+.|++++||+..
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 999999998888899999999999999999999989888887 689999999999863
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.9e-43 Score=368.37 Aligned_cols=468 Identities=20% Similarity=0.186 Sum_probs=333.0
Q ss_pred CCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEcc
Q 047676 74 HLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLY 153 (576)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 153 (576)
...+.+.+++.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 6 ~~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 6 ASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp TTSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence 3445677777776 4555443 789999999998887778888899999999999998887777788889999999999
Q ss_pred ccccCcccCcccCCCCCCCEEEeecccCcc-cCCccccCCCccceeeccCCcCCCcCC-ccccCCCCCcEEEccCccccc
Q 047676 154 ANCLEGLIPHSLGNLTNLAILYLYNNSLSG-SIPSEIGNLKFLSRTALSHNKLSGSIP-HSLGNLSNLVILFLDNNLLFG 231 (576)
Q Consensus 154 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~ 231 (576)
+|.+....+..+.++++|++|++++|.+++ ..+..+..+++|+.|++++|...+.++ ..+.++++|++|++++|.+..
T Consensus 83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 998888877778888889999888888775 244567777777777777776333333 456667777777777777666
Q ss_pred cCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccC
Q 047676 232 LIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSN 311 (576)
Q Consensus 232 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 311 (576)
..+..+..+++|+.|+++.+.+.......+..+++|++|++++|.+.+.... .......
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------~~~~~~~ 221 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS---------------------PLPVDEV 221 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCC---------------------CCSSCCC
T ss_pred cChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccc---------------------ccchhhh
Confidence 6666666666777777666665433222233456666666666655532100 0011122
Q ss_pred CCCCcEEEcccCcccccCc----hhcccCCCCcEEEccCCccccc-------CCCCCCCCCCcEEEccCccceeec----
Q 047676 312 LTNLVFLSFYQNSLSGAIP----KEYQNLVKLTKLLLGNNQFQGP-------IPNLRNLTSLVRVRLNRNYLTGNI---- 376 (576)
Q Consensus 312 l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~-------~~~~~~~~~L~~L~l~~~~~~~~~---- 376 (576)
+++|+.|++.++.+.+..+ ..+..+++|+.+++++|.+... ...+..+++++.+.+.++.+....
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 301 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCC
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhccc
Confidence 3444444444444432221 2223455566666655554331 122455677777777776554321
Q ss_pred -CccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCC---ccccCCCCCCEEeCCCCcccccCc--c
Q 047676 377 -SESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIP---SEIGYSSQLEVLDLSSNHIVGEIP--T 450 (576)
Q Consensus 377 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~ 450 (576)
...+...++|+.|++++|.+.......+..+++|++|++++|++.+..+ ..+..+++|++|++++|++.+..+ .
T Consensus 302 l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 381 (549)
T 2z81_A 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381 (549)
T ss_dssp CCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHH
T ss_pred chhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchh
Confidence 1123346799999999999874433334679999999999999987653 346789999999999999875432 4
Q ss_pred cccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCC
Q 047676 451 ELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHL 530 (576)
Q Consensus 451 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 530 (576)
.+..+++|++|++++|++. ..+..+..+++|++|++++|.++. ++..+ .++|++|++++|++++. +..+++|
T Consensus 382 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L 453 (549)
T 2z81_A 382 ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSF----SLFLPRL 453 (549)
T ss_dssp HGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCC----CCCCTTC
T ss_pred hhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhh----cccCChh
Confidence 5889999999999999998 456678889999999999999884 33333 26999999999999764 3578999
Q ss_pred CEEeCCCCcCcccCCccCcCCCCCceEeCcCCccccccCcccccc
Q 047676 531 SELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPRCFEEM 575 (576)
Q Consensus 531 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~~~~~ 575 (576)
++|++++|++. .+|. ...+++|+.|++++|++++..|+.|..+
T Consensus 454 ~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 496 (549)
T 2z81_A 454 QELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRL 496 (549)
T ss_dssp CEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGC
T ss_pred cEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcC
Confidence 99999999996 5665 4678999999999999999988877765
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-43 Score=364.48 Aligned_cols=456 Identities=22% Similarity=0.204 Sum_probs=311.1
Q ss_pred CEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEcccc
Q 047676 76 AYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYAN 155 (576)
Q Consensus 76 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 155 (576)
++|+++++.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 68999999987 5666555 89999999999998777788999999999999999998777889999999999999999
Q ss_pred ccCcccCcccCCCCCCCEEEeecccCcc-cCCccccCCCccceeeccCCcCCCcCCccccCCCCC--cEEEccCccc--c
Q 047676 156 CLEGLIPHSLGNLTNLAILYLYNNSLSG-SIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNL--VILFLDNNLL--F 230 (576)
Q Consensus 156 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~ 230 (576)
.+..++.. .+++|++|++++|.+++ ..|..+..+++|+.|++++|.+.+ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 98865433 78999999999998876 356788888888888888888764 345666777 8888888877 5
Q ss_pred ccCCccccCCC-CCCEEEccCCCCcc-cCCcccCCCCCccEEEccCCc-------ccccccccccCCCCCCeEEcccccc
Q 047676 231 GLIPSELRNLK-SLYFLELGNNKLSG-PIPHFFGNLTNLGVLYIYNNL-------LSGSIPCEIGNLKFLSELNLGFNKL 301 (576)
Q Consensus 231 ~~~~~~l~~l~-~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~l~~L~~L~L~~~~~ 301 (576)
...+..+..+. +...+++++|.+.+ .....+..+++|+.+++++|. +.+.++ .+..+++|+.|+++++.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 55555555544 22345556665543 222344566677777776664 333333 445555666666655544
Q ss_pred cccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCC-C-----CCCCCCcEEEccCccceee
Q 047676 302 SNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN-L-----RNLTSLVRVRLNRNYLTGN 375 (576)
Q Consensus 302 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~-----~~~~~L~~L~l~~~~~~~~ 375 (576)
.......+. .. ...++|++|++++|.+.+..|. + ..++.|+.+++.++.+ ..
T Consensus 233 ~~~~~~~~~--------------------~~-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~ 290 (520)
T 2z7x_B 233 TWNSFIRIL--------------------QL-VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GF 290 (520)
T ss_dssp EHHHHHHHH--------------------HH-HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CS
T ss_pred CHHHHHHHH--------------------HH-hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ec
Confidence 321111000 00 1123455555555554433322 2 4556666666666555 22
Q ss_pred cCccccCC---CCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccc--cCcc
Q 047676 376 ISESFYIY---PNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVG--EIPT 450 (576)
Q Consensus 376 ~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~ 450 (576)
....+..+ ++|+.|++++|.+.... .+..+++|++|++++|++.+..+..+..+++|++|++++|++.+ ..|.
T Consensus 291 p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 368 (520)
T 2z7x_B 291 PQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368 (520)
T ss_dssp CTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHH
T ss_pred chhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchH
Confidence 11222222 46777777777664322 12567778888888887776677777778888888888887765 3445
Q ss_pred cccCccCCceeecccccccccCC-cccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCC
Q 047676 451 ELGKLSFFIKLILAQNQLSGQLS-PKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIH 529 (576)
Q Consensus 451 ~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 529 (576)
.+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+. ++|+.|++++|+++ .+|..+..+++
T Consensus 369 ~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~ 445 (520)
T 2z7x_B 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEA 445 (520)
T ss_dssp HHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred HHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCC
Confidence 67778888888888887776333 3466778888888888888766555443 68888888888886 66666668888
Q ss_pred CCEEeCCCCcCcccCCc-cCcCCCCCceEeCcCCccccccC
Q 047676 530 LSELDLSYNFLGREIPS-QICIMQSLEKLNLSHNSLSGVIP 569 (576)
Q Consensus 530 L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~~~p 569 (576)
|++|++++|++.+ +|. .+..+++|++|++++|++++..|
T Consensus 446 L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 446 LQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 8888888888864 444 37778888888888888875544
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.9e-43 Score=362.72 Aligned_cols=452 Identities=19% Similarity=0.204 Sum_probs=323.9
Q ss_pred EEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCC
Q 047676 51 NSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSK 130 (576)
Q Consensus 51 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 130 (576)
+++++++++++ .+|. .+. +++++|++++|.+.+..+.+|..+++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPK-DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCC-SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-cccc-ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 57899999998 4665 333 8999999999999988778999999999999999999977899999999999999999
Q ss_pred CcCCCCCCcccCCCCCCCEEEccccccCcc-cCcccCCCCCCCEEEeecccCcccCCccccCCCcc--ceeeccCCcC--
Q 047676 131 NKLSGSIPLEVGRLSSLNNLTLYANCLEGL-IPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFL--SRTALSHNKL-- 205 (576)
Q Consensus 131 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~-- 205 (576)
|.++ .+|.. .+++|++|++++|.+... .|..++++++|++|++++|.+++ ..+..+++| +.+++++|.+
T Consensus 79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence 9998 56666 899999999999999874 57899999999999999999875 456677777 9999999998
Q ss_pred CCcCCccccCCC-CCcEEEccCcccccc-CCccccCCCCCCEEEccCCC-------CcccCCcccCCCCCccEEEccCCc
Q 047676 206 SGSIPHSLGNLS-NLVILFLDNNLLFGL-IPSELRNLKSLYFLELGNNK-------LSGPIPHFFGNLTNLGVLYIYNNL 276 (576)
Q Consensus 206 ~~~~~~~~~~l~-~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~~~ 276 (576)
.+..|..+..+. +...+++.+|.+... ....+..+++|+.+++++|. +.+..+ .+..+++|+.|+++++.
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence 667777776655 334566777766543 34467789999999999986 443333 57788999999999988
Q ss_pred ccccccccc---cCCCCCCeEEcccccccccCCccc-----cCCCCCcEEEcccCcccccCc-hhcccC---CCCcEEEc
Q 047676 277 LSGSIPCEI---GNLKFLSELNLGFNKLSNSIPVSL-----SNLTNLVFLSFYQNSLSGAIP-KEYQNL---VKLTKLLL 344 (576)
Q Consensus 277 ~~~~~~~~~---~~l~~L~~L~L~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~-~~~~~l---~~L~~L~l 344 (576)
+.+..+..+ ...++|++|++++|.+.+..+..+ ..++.|+.++++++.+ ..| ..+..+ .+|+.|++
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence 765322211 124689999999998886666666 6778888888887776 233 333333 45777777
Q ss_pred cCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccc--
Q 047676 345 GNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITG-- 422 (576)
Q Consensus 345 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-- 422 (576)
++|.+.... .. ..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+
T Consensus 310 ~~n~l~~~~-~~------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 364 (520)
T 2z7x_B 310 SGTRMVHML-CP------------------------SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364 (520)
T ss_dssp ESSCCCCCC-CC------------------------SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred CCCcccccc-ch------------------------hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence 766543211 11 344555555555555554444555556666666666666553
Q ss_pred cCCccccCCCCCCEEeCCCCcccccCcc-cccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhcc
Q 047676 423 NIPSEIGYSSQLEVLDLSSNHIVGEIPT-ELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLG 501 (576)
Q Consensus 423 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~ 501 (576)
.++..+..+++|++|++++|.+.+..|. .+..+++|++|++++|.+.+..+..+. ++|++|++++|.++ .+|..+.
T Consensus 365 ~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~ 441 (520)
T 2z7x_B 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV 441 (520)
T ss_dssp HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence 2334455666666666666666553333 355666666666666666544333322 57777777777777 5555555
Q ss_pred CCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCccc
Q 047676 502 NLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGRE 543 (576)
Q Consensus 502 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 543 (576)
.+++|++|++++|+++...+..+..+++|++|++++|++...
T Consensus 442 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 777888888888877643333477777888888888877553
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-43 Score=373.67 Aligned_cols=458 Identities=21% Similarity=0.283 Sum_probs=336.8
Q ss_pred CCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCC------C------CCCcccCCCCCCCEEEccccccCcccCcc
Q 047676 97 SKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLS------G------SIPLEVGRLSSLNNLTLYANCLEGLIPHS 164 (576)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 164 (576)
.+++.|+|+++.+.+.+|..++++++|++|++++|.+. + .+|... +..|+ ++++++.+....+..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 47899999999999999999999999999999999752 1 112211 33444 555665555444444
Q ss_pred cCCC-CCCCEEEeecccCcccCCccccCCCccceeecc--CCcCCCcCCccccCCCCCcEEEccCcccccc---------
Q 047676 165 LGNL-TNLAILYLYNNSLSGSIPSEIGNLKFLSRTALS--HNKLSGSIPHSLGNLSNLVILFLDNNLLFGL--------- 232 (576)
Q Consensus 165 ~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--------- 232 (576)
+..+ ..+..+++....+. ......++.+.+. .|.+++ +|..++++++|++|++++|.++..
T Consensus 158 ~~~~~~~l~~~~l~~~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHHhhcCccccccc------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 3311 11111111110000 0111122222222 356665 677777788888888888777763
Q ss_pred --------CCcccc--CCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCc-ccc-cccccccCC------CCCCeE
Q 047676 233 --------IPSELR--NLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNL-LSG-SIPCEIGNL------KFLSEL 294 (576)
Q Consensus 233 --------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L 294 (576)
.|..+. .+++|++|++++|.+.+..|..+..+++|++|++++|. +++ .+|..+..+ ++|+.|
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 666777 88888888888888777777778888888888888887 776 566666554 888888
Q ss_pred EcccccccccCCc--cccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCC-CcEEEccCcc
Q 047676 295 NLGFNKLSNSIPV--SLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTS-LVRVRLNRNY 371 (576)
Q Consensus 295 ~L~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~ 371 (576)
++++|.++ ..+. .+..+++|++|++++|.+.+..| .+..+++|+.|++++|.+......+..+++ |+.|++++|.
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC
T ss_pred ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc
Confidence 88888887 5565 67888888888888888876667 778888888888888888755445777787 8888888888
Q ss_pred ceeecCccccCC--CCCcEEEccCCccccccCcccC-------CCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCC
Q 047676 372 LTGNISESFYIY--PNLTFIDLSHNNFYGEISSDWG-------RCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSN 442 (576)
Q Consensus 372 ~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 442 (576)
++ .++..+... ++|+.|++++|.+....+..+. .+++|++|++++|++....+..+..+++|++|++++|
T Consensus 389 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 389 LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence 87 445555554 4889999999988876666666 7789999999999988444445667899999999999
Q ss_pred cccccCcccccC-------ccCCceeecccccccccCCcccc--cCCCCCEeeCCCCcCccccchhccCCCCCCEeeC--
Q 047676 443 HIVGEIPTELGK-------LSFFIKLILAQNQLSGQLSPKLG--LLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNL-- 511 (576)
Q Consensus 443 ~~~~~~~~~l~~-------l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l-- 511 (576)
.+....+..+.. +++|++|++++|.+. ..+..+. .+++|++|++++|.+++ +|..+..+++|+.|++
T Consensus 468 ~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCS
T ss_pred CCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCC
Confidence 887333333333 338999999999998 5555665 89999999999999996 7888889999999999
Q ss_pred ----CCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCccccccCccc
Q 047676 512 ----SNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPRCF 572 (576)
Q Consensus 512 ----~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~~ 572 (576)
++|++.+.+|..+..+++|++|++++|++ +.+|..+. ++|++|++++|++..+-+..+
T Consensus 546 N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~ 607 (636)
T 4eco_A 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISIDLSYV 607 (636)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEECTTT
T ss_pred CcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccccHHhc
Confidence 56778889999999999999999999999 67787765 899999999998876554444
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.6e-40 Score=354.58 Aligned_cols=512 Identities=23% Similarity=0.195 Sum_probs=399.7
Q ss_pred EEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCC
Q 047676 52 SINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKN 131 (576)
Q Consensus 52 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 131 (576)
++++++.+++ .+|. .+. +++++|||++|.|++..+.+|.++++|++|+|++|.+.+..+.+|.++++|++|++++|
T Consensus 35 ~~~c~~~~l~-~vP~-~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFY-KIPD-NLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCS-SCCS-SSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcC-ccCC-CCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 4566666665 3444 221 47999999999999887889999999999999999999777888999999999999999
Q ss_pred cCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcc-cCCccccCCCccceeeccCCcCCCcCC
Q 047676 132 KLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSG-SIPSEIGNLKFLSRTALSHNKLSGSIP 210 (576)
Q Consensus 132 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~ 210 (576)
.+++..+..|.++++|++|++++|.+..+.+..|+++++|++|++++|.++. ..+..+..+++|+.|++++|.+.+..+
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 9996666789999999999999999999888899999999999999999875 356778889999999999999987777
Q ss_pred ccccCCCCC----cEEEccCccccccCCccccCCCCCCEEEccCCCCcc-cCCcccCCCCCccEEEccCCcc------cc
Q 047676 211 HSLGNLSNL----VILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSG-PIPHFFGNLTNLGVLYIYNNLL------SG 279 (576)
Q Consensus 211 ~~~~~l~~L----~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~------~~ 279 (576)
..+..+.++ ..++++.+.+....+..+.. ..+..+++.++.... .....+..+..++...+..... ..
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred ccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence 777655443 46788888887666554433 356677777765421 2223345566666655543221 11
Q ss_pred cccccccCCCCCCeEEccccccc---ccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCC
Q 047676 280 SIPCEIGNLKFLSELNLGFNKLS---NSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNL 356 (576)
Q Consensus 280 ~~~~~~~~l~~L~~L~L~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 356 (576)
.....+.....+....+..+... ......+..+.+++.+.+.++.+... ..+.....++.+++.++.+.....
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~-- 345 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT-- 345 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC--
T ss_pred ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc--
Confidence 12223334445555554433221 12333455678889999888877643 245667899999999998764433
Q ss_pred CCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccc--cCcccCCCCCCCEEEccCCcccccCCccccCCCCC
Q 047676 357 RNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGE--ISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQL 434 (576)
Q Consensus 357 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 434 (576)
..++.|+.+.+..+...... ....+++|+.+++++|.+... .+..+..+.+|+.+++..+... ..+..+..+++|
T Consensus 346 ~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L 422 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQL 422 (635)
T ss_dssp CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTC
T ss_pred ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccc
Confidence 35678899999887765432 345689999999999987633 3445667899999999999877 445668889999
Q ss_pred CEEeCCCCcccccCc-ccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcC-ccccchhccCCCCCCEeeCC
Q 047676 435 EVLDLSSNHIVGEIP-TELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRL-SNSIPESLGNLVKLHYLNLS 512 (576)
Q Consensus 435 ~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~-~~~~~~~~~~l~~L~~L~l~ 512 (576)
+.+++.++......+ ..+..+++++.++++.|.+....+..+..+++|+.|++++|.+ ....|..+..+++|++|+++
T Consensus 423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502 (635)
T ss_dssp CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence 999999887655443 4678899999999999999888888889999999999999984 44577889999999999999
Q ss_pred CCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCccccccCcccccc
Q 047676 513 NNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPRCFEEM 575 (576)
Q Consensus 513 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~~~~~ 575 (576)
+|++++..|..|.++++|++|++++|++++..|..|..+++|++|++++|++++..|+.|..+
T Consensus 503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 999998889999999999999999999988888889999999999999999999999888654
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.6e-41 Score=359.12 Aligned_cols=381 Identities=20% Similarity=0.248 Sum_probs=247.9
Q ss_pred cccCcccCcccCCCCCCCEEEeecccCccc-CCccccCCCccceeeccCCcCCCcCCcccc--CCCCCcEEEccCccccc
Q 047676 155 NCLEGLIPHSLGNLTNLAILYLYNNSLSGS-IPSEIGNLKFLSRTALSHNKLSGSIPHSLG--NLSNLVILFLDNNLLFG 231 (576)
Q Consensus 155 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~ 231 (576)
|.+.. +|..+.++++|++|++++|.+++. .+..+.. .+.+...+.+|..++ ++++|+.|++++|.+..
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~--------~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~ 505 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED--------ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC--------TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccc--------cccccccccCChhhhhccCCCCCEEECcCCCCCc
Confidence 44444 455566666666666666666541 1100000 000111113566655 66777777777776666
Q ss_pred cCCccccCCCCCCEEEccCCC-Ccc-cCCcc-------cCCCCCccEEEccCCcccccccc--cccCCCCCCeEEccccc
Q 047676 232 LIPSELRNLKSLYFLELGNNK-LSG-PIPHF-------FGNLTNLGVLYIYNNLLSGSIPC--EIGNLKFLSELNLGFNK 300 (576)
Q Consensus 232 ~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~-------l~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~L~~~~ 300 (576)
..|..+..+++|+.|++++|+ +.+ ..|.. +..+++|+.|++++|.+. .+|. .+..+++|+.|++++|.
T Consensus 506 ~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC
T ss_pred cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC
Confidence 666667777777777777776 553 33332 334458888888888887 6676 77888888888888888
Q ss_pred ccccCCccccCCCCCcEEEcccCcccccCchhcccCCC-CcEEEccCCcccccCCCCCCCC--CCcEEEccCccceeecC
Q 047676 301 LSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVK-LTKLLLGNNQFQGPIPNLRNLT--SLVRVRLNRNYLTGNIS 377 (576)
Q Consensus 301 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~ 377 (576)
+. ..+ .+..+++|+.|++++|.+. ..|..+..+++ |+.|++++|.+......+...+ +|+.|++++|.+.+.++
T Consensus 585 l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 585 VR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp CC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred cc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence 87 445 7788888999999888888 67777888888 9999999998874333344333 37777777776654322
Q ss_pred ccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCcc-ccCCCCCCEEeCCCCcccccCccc-c---
Q 047676 378 ESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSE-IGYSSQLEVLDLSSNHIVGEIPTE-L--- 452 (576)
Q Consensus 378 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~-l--- 452 (576)
..... .....+++|+.|++++|++. .+|.. +..+++|+.|++++|.+. .+|.. +
T Consensus 662 ~l~~~-------------------l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~ 720 (876)
T 4ecn_A 662 NISCS-------------------MDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPK 720 (876)
T ss_dssp SCSSC-------------------TTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT
T ss_pred cchhh-------------------hccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc
Confidence 11100 00012234555555555554 22322 234555555555555544 22221 1
Q ss_pred ----cCccCCceeecccccccccCCcccc--cCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCC------CcCCCCc
Q 047676 453 ----GKLSFFIKLILAQNQLSGQLSPKLG--LLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSN------NHFSREI 520 (576)
Q Consensus 453 ----~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~------~~~~~~~ 520 (576)
.++++|+.|++++|.+. ..+..+. .+++|+.|++++|.+++ +|..+..+++|+.|++++ |++.+.+
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i 798 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccC
Confidence 22346777777777766 4444554 77788888888888775 566677778888888765 8888899
Q ss_pred cccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCccccccCccccc
Q 047676 521 PIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPRCFEE 574 (576)
Q Consensus 521 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~~~~ 574 (576)
|..+..+++|++|++++|++ +.+|..+. ++|+.|+|++|++..+-+..|+.
T Consensus 799 p~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 799 PTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHH
T ss_pred hHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccc
Confidence 99999999999999999999 77888765 69999999999998888877764
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.8e-40 Score=342.86 Aligned_cols=460 Identities=22% Similarity=0.178 Sum_probs=307.2
Q ss_pred CCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEE
Q 047676 72 FPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLT 151 (576)
Q Consensus 72 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 151 (576)
+...++++++++.+++ +|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|..+++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 3445899999999874 665553 8999999999999877778899999999999999999877788899999999999
Q ss_pred ccccccCcccCcccCCCCCCCEEEeecccCccc-CCccccCCCccceeeccCCcCCCcCCccccCCCCC--cEEEccCcc
Q 047676 152 LYANCLEGLIPHSLGNLTNLAILYLYNNSLSGS-IPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNL--VILFLDNNL 228 (576)
Q Consensus 152 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~ 228 (576)
+++|.+..+... .+++|++|++++|.+++. .+..+.++++|+.|++++|.+.+. .+..+++| +.|++++|.
T Consensus 107 Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 999998865433 789999999999988763 357788888888888888887642 34445555 888888887
Q ss_pred c--cccCCccccCCC--CCCEEEccCCCCcccC-CcccCCCCCccEEEccCCccc----ccccccccCCCCCCeEEcccc
Q 047676 229 L--FGLIPSELRNLK--SLYFLELGNNKLSGPI-PHFFGNLTNLGVLYIYNNLLS----GSIPCEIGNLKFLSELNLGFN 299 (576)
Q Consensus 229 ~--~~~~~~~l~~l~--~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~L~~~ 299 (576)
+ ....+..+..+. .+ .++++.|.+.... ...+..+++|+.+++++|... ......+..++.|+.+++.++
T Consensus 181 l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp CCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred ccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 7 666666665544 22 3455555554322 223345566666666665310 011112344455555555444
Q ss_pred cccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCC-C-----CCCCCCcEEEccCccce
Q 047676 300 KLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN-L-----RNLTSLVRVRLNRNYLT 373 (576)
Q Consensus 300 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~-----~~~~~L~~L~l~~~~~~ 373 (576)
.+..... .. .+. ....++|++|++++|.+.+..|. + ..++.|+.+++..+.+
T Consensus 260 ~l~~~~~-------------------~~-~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~- 317 (562)
T 3a79_B 260 ETTWKCS-------------------VK-LFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF- 317 (562)
T ss_dssp EECHHHH-------------------HH-HHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-
T ss_pred cCcHHHH-------------------HH-HHH-hhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-
Confidence 3321100 00 001 11123555555555555433332 2 3333333333333333
Q ss_pred eecCcccc---CCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCccccc--C
Q 047676 374 GNISESFY---IYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGE--I 448 (576)
Q Consensus 374 ~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~ 448 (576)
......+. ..++|+.|++++|.+.... ....+++|++|++++|.+.+..+..+..+++|++|++++|++.+. .
T Consensus 318 ~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 395 (562)
T 3a79_B 318 LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395 (562)
T ss_dssp SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHH
T ss_pred ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccc
Confidence 11101111 1256888888887765322 125778888888888888877777788888888888888887753 2
Q ss_pred cccccCccCCceeecccccccc-cCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCC
Q 047676 449 PTELGKLSFFIKLILAQNQLSG-QLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEEL 527 (576)
Q Consensus 449 ~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 527 (576)
+..+.++++|++|++++|.+.. .....+..+++|++|++++|.+++..+..+. ++|++|++++|+++ .+|..+..+
T Consensus 396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l 472 (562)
T 3a79_B 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHL 472 (562)
T ss_dssp HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSS
T ss_pred hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCC
Confidence 4567788888888888888876 3334577788888889988888765554443 68889999998886 566656688
Q ss_pred CCCCEEeCCCCcCcccCCcc-CcCCCCCceEeCcCCccccccC
Q 047676 528 IHLSELDLSYNFLGREIPSQ-ICIMQSLEKLNLSHNSLSGVIP 569 (576)
Q Consensus 528 ~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~p 569 (576)
++|++|++++|++++ +|.. +..+++|+.|++++|++.+..|
T Consensus 473 ~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 473 QALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 889999999988864 4544 7888889999999988876554
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.9e-39 Score=338.10 Aligned_cols=455 Identities=20% Similarity=0.173 Sum_probs=289.2
Q ss_pred EEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCC
Q 047676 50 VNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLS 129 (576)
Q Consensus 50 i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 129 (576)
.++++++++++++ +|. .+. +++++|++++|.+.+..+.+|..+++|++|++++|.+.+..|..|.++++|++|+++
T Consensus 33 ~~~l~ls~~~L~~-ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCS-CCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCcc-CCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 4899999999985 665 232 899999999999998888899999999999999999998889999999999999999
Q ss_pred CCcCCCCCCcccCCCCCCCEEEccccccCccc-CcccCCCCCCCEEEeecccCcccCCccccCCCcc--ceeeccCCcC-
Q 047676 130 KNKLSGSIPLEVGRLSSLNNLTLYANCLEGLI-PHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFL--SRTALSHNKL- 205 (576)
Q Consensus 130 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~- 205 (576)
+|.++ .+|.. .+++|++|++++|.+..+. |..+.++++|++|++++|.++.. .+..+++| +.+++++|.+
T Consensus 109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp TSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred CCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence 99998 66766 8999999999999998754 57899999999999999998753 44555555 9999999988
Q ss_pred -CCcCCccccCCC-CCcEEEccCccccccCC-ccccCCCCCCEEEccCCCCc----ccCCcccCCCCCccEEEccCCccc
Q 047676 206 -SGSIPHSLGNLS-NLVILFLDNNLLFGLIP-SELRNLKSLYFLELGNNKLS----GPIPHFFGNLTNLGVLYIYNNLLS 278 (576)
Q Consensus 206 -~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~ 278 (576)
.+..+..+..+. ..-.+++++|.+....+ ..+..+++|+.+++++|... ......+..+++|+.+++.++.+.
T Consensus 183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 777777777654 12245667776654333 34667889999999988521 011234567788888988877655
Q ss_pred ccccc---cccCCCCCCeEEcccccccccCCccc-----cCCCCCcEEEcccCcccccCc-hhcc---cCCCCcEEEccC
Q 047676 279 GSIPC---EIGNLKFLSELNLGFNKLSNSIPVSL-----SNLTNLVFLSFYQNSLSGAIP-KEYQ---NLVKLTKLLLGN 346 (576)
Q Consensus 279 ~~~~~---~~~~l~~L~~L~L~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~-~~~~---~l~~L~~L~l~~ 346 (576)
+.... .....++|++|++++|.+.+..+..+ ..++.|+.+++..+.+ ..| ..+. ...+|++|++++
T Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccC
Confidence 32111 11223588889998888875555544 4444555555554444 222 2221 124577777776
Q ss_pred CcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCc
Q 047676 347 NQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPS 426 (576)
Q Consensus 347 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 426 (576)
|.+.... ....+++|+.|++++|.+++..+..+..+++|+.|++++|.+.... ..+.
T Consensus 341 n~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~ 397 (562)
T 3a79_B 341 TPFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF----------------------KVAL 397 (562)
T ss_dssp SCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT----------------------HHHH
T ss_pred CCccccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc----------------------cchh
Confidence 6653211 1134455555555555554444444444445555555444444311 1123
Q ss_pred cccCCCCCCEEeCCCCcccccCc-ccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCC
Q 047676 427 EIGYSSQLEVLDLSSNHIVGEIP-TELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVK 505 (576)
Q Consensus 427 ~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~ 505 (576)
.+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+.+..+..+. ++|++|++++|.++ .+|..+..+++
T Consensus 398 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~ 474 (562)
T 3a79_B 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQA 474 (562)
T ss_dssp TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCC
T ss_pred hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCC
Confidence 34444555555555555443222 2344445555555555554433222211 45666666666555 33333335566
Q ss_pred CCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcc
Q 047676 506 LHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGR 542 (576)
Q Consensus 506 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 542 (576)
|++|++++|+++...+..+..+++|+.|++++|++..
T Consensus 475 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 6666666666653222235555666666666665543
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.5e-37 Score=312.99 Aligned_cols=379 Identities=23% Similarity=0.218 Sum_probs=236.2
Q ss_pred EEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCcccc-ccCCccccCCCCCCEEEccCC
Q 047676 173 ILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLF-GLIPSELRNLKSLYFLELGNN 251 (576)
Q Consensus 173 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~ 251 (576)
.++.+++.++ ..|. + .++|+.|++++|.+.+..+..+.++++|++|++++|.+. ...+..|..+++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4455555444 2333 2 256777777777777666677777777777777777665 344556777777777777777
Q ss_pred CCcccCCcccCCCCCccEEEccCCccccccccc--ccCCCCCCeEEcccccccccCCcc-ccCCCCCcEEEcccCccccc
Q 047676 252 KLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCE--IGNLKFLSELNLGFNKLSNSIPVS-LSNLTNLVFLSFYQNSLSGA 328 (576)
Q Consensus 252 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~ 328 (576)
.+....+..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+....+.. +..+++|++|++++|.+.+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 777666667777777777777777776533333 666777777777777776554443 56677777777777777666
Q ss_pred CchhcccC--CCCcEEEccCCcccccCCC---------CCCCCCCcEEEccCccceeecCccccC---CCCCcEEEccCC
Q 047676 329 IPKEYQNL--VKLTKLLLGNNQFQGPIPN---------LRNLTSLVRVRLNRNYLTGNISESFYI---YPNLTFIDLSHN 394 (576)
Q Consensus 329 ~~~~~~~l--~~L~~L~l~~~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~ 394 (576)
.+..+..+ .+++.++++++.+....+. +..+++|+.|++++|.++...+..+.. .++|+.|+++++
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 66555554 5666777776666543322 223455566666655555433333322 255555555555
Q ss_pred ccccccCcccCCCCCCCEEEccCCcccccCCcccc--CCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccC
Q 047676 395 NFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIG--YSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQL 472 (576)
Q Consensus 395 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 472 (576)
........ .+.+....+..+. ..++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 250 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 250 YNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred cccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 43211000 0000000011111 2356777777777766666666677777777777777776666
Q ss_pred CcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCC
Q 047676 473 SPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQ 552 (576)
Q Consensus 473 ~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 552 (576)
+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+..+..++
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC
Confidence 66666777777777777777666666677777777777777777666666677777777777777777665555566677
Q ss_pred CCceEeCcCCccccccC
Q 047676 553 SLEKLNLSHNSLSGVIP 569 (576)
Q Consensus 553 ~L~~L~l~~~~l~~~~p 569 (576)
+|++|++++|++++..|
T Consensus 396 ~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 396 SLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCBCCCTT
T ss_pred cccEEEccCCCcccCCC
Confidence 77777777777776666
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.9e-37 Score=311.12 Aligned_cols=391 Identities=21% Similarity=0.195 Sum_probs=234.2
Q ss_pred cEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccC-cccCcccCCCCCCCEEEeec
Q 047676 100 KYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLE-GLIPHSLGNLTNLAILYLYN 178 (576)
Q Consensus 100 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~ 178 (576)
+.++.+++.+. .+|. + .++|++|++++|.+++..|..+.++++|++|++++|.+. .+.+..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 46777777776 5665 3 378999999999998777888999999999999998876 44567788899999999999
Q ss_pred ccCcccCCccccCCCccceeeccCCcCCCcCCcc--ccCCCCCcEEEccCccccccCCcc-ccCCCCCCEEEccCCCCcc
Q 047676 179 NSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHS--LGNLSNLVILFLDNNLLFGLIPSE-LRNLKSLYFLELGNNKLSG 255 (576)
Q Consensus 179 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~ 255 (576)
|.+++..+..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+....+.. +..+++|++|++++|.+..
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 8888777888888888888888888877544433 677778888888888777665554 6777778888887777766
Q ss_pred cCCcccCCC--CCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhc
Q 047676 256 PIPHFFGNL--TNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEY 333 (576)
Q Consensus 256 ~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 333 (576)
..+..+..+ .+++.++++++.+....+..+.. .....+..+++|++|++++|.+.+..+..+
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGNGFKESMAKRF 232 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred cChhhhhccccccccccccccCcccccchhhccc----------------cccccccccceeeeEecCCCcccccchhhh
Confidence 655555543 46666666666655332221110 000112345677777777777766555555
Q ss_pred ccC---CCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCC
Q 047676 334 QNL---VKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKL 410 (576)
Q Consensus 334 ~~l---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 410 (576)
... .+|+.+++++|.......... .+.......+..+ .+++|
T Consensus 233 ~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~----------------------~~~~L 277 (455)
T 3v47_A 233 FDAIAGTKIQSLILSNSYNMGSSFGHT-------------NFKDPDNFTFKGL----------------------EASGV 277 (455)
T ss_dssp HHHTTTCCEEEEECTTCTTTSCCTTCC-------------SSCCCCTTTTGGG----------------------TTSCC
T ss_pred hccccccceeeEeeccccccccccchh-------------hhccCcccccccc----------------------cccCc
Confidence 433 667777777665432211111 1111111111110 12344
Q ss_pred CEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCC
Q 047676 411 DSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSN 490 (576)
Q Consensus 411 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~ 490 (576)
++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS
T ss_pred eEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC
Confidence 44444444444444444444444444444444444444444444445555555555444444444455555555555555
Q ss_pred cCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCC
Q 047676 491 RLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIP 545 (576)
Q Consensus 491 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 545 (576)
.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 358 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 5554445555555555555555555554444445555555555555555554443
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.1e-37 Score=296.20 Aligned_cols=288 Identities=33% Similarity=0.522 Sum_probs=233.9
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCc--cceeeeCCC---CCEEEEEcCCCCccc--ccCCcccCCCCC
Q 047676 2 EESHALLRWKTSLQNHNNGSSLSSWTVNNVTKIGPCA--WVGIHCNHG---GRVNSINLTNIGLKG--TLHDFSFSSFPH 74 (576)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~c~~~---~~i~~l~l~~~~~~~--~~~~~~~~~~~~ 74 (576)
+|+++|++||.+++++ . ...+|. .+.++|. |.||.|... ++|++|+++++.+.+ .++. .+.++++
T Consensus 6 ~~~~aL~~~k~~~~~~--~-~l~~W~----~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~-~l~~l~~ 77 (313)
T 1ogq_A 6 QDKQALLQIKKDLGNP--T-TLSSWL----PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SLANLPY 77 (313)
T ss_dssp HHHHHHHHHHHHTTCC--G-GGTTCC----TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GGGGCTT
T ss_pred HHHHHHHHHHHhcCCc--c-cccCCC----CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh-hHhCCCC
Confidence 5789999999999866 3 688997 5678888 999999874 799999999999998 7777 8999999
Q ss_pred CCEEECCC-CCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEcc
Q 047676 75 LAYLDLWS-NQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLY 153 (576)
Q Consensus 75 L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 153 (576)
|++|++++ |.+.+.+|.+|.++++|++|++++|.+.+.+|..|.++++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 99999995 88888889999999999999999999988889999999999999999999988888889999999999999
Q ss_pred ccccCcccCcccCCCC-CCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCcccccc
Q 047676 154 ANCLEGLIPHSLGNLT-NLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGL 232 (576)
Q Consensus 154 ~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 232 (576)
+|.+....|..+..++ +|++|++++|.+++..+..+..++ |+.|++++|.+.+..+..+..+++|+.|++++|.++..
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 9988877788888887 888888888888877777777776 88888888877777777777777777777777776644
Q ss_pred CCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEccccc
Q 047676 233 IPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNK 300 (576)
Q Consensus 233 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 300 (576)
.+. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.+|.. ..+++|+.+++.+|.
T Consensus 237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 433 566677777777777776666666666777777777777776655544 556666666666664
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.9e-36 Score=303.53 Aligned_cols=422 Identities=27% Similarity=0.292 Sum_probs=210.0
Q ss_pred CCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEE
Q 047676 72 FPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLT 151 (576)
Q Consensus 72 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 151 (576)
.++|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++++++|+.+++.+|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 46777778877777 57777777778888888877777767777777777664444444321 2456666
Q ss_pred ccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCccccc
Q 047676 152 LYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFG 231 (576)
Q Consensus 152 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 231 (576)
+++|.+..++. -.++|++|++++|.+++ .+.. .++|+.|++++|.+.+ ++.. .++|++|++++|.++.
T Consensus 78 l~~~~l~~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 78 LNNLGLSSLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK 145 (454)
T ss_dssp CTTSCCSCCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS
T ss_pred ecCCccccCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC
Confidence 66666554322 12566777777666654 3322 3567777777776653 2221 1578888888888776
Q ss_pred cCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccC
Q 047676 232 LIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSN 311 (576)
Q Consensus 232 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 311 (576)
. | ++..+++|++|++++|.+... +.. .++|++|++++|.+.+ +| .+..+++|+.|++++|.+... +. .
T Consensus 146 l-p-~~~~l~~L~~L~l~~N~l~~l-p~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~---~ 213 (454)
T 1jl5_A 146 L-P-ELQNSSFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PD---L 213 (454)
T ss_dssp C-C-CCTTCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CC---C
T ss_pred C-c-ccCCCCCCCEEECCCCcCccc-CCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CC---C
Confidence 3 3 578888888888888887742 222 2478888888888775 44 577788888888888877642 21 1
Q ss_pred CCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEc
Q 047676 312 LTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDL 391 (576)
Q Consensus 312 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 391 (576)
.++|++|++++|.+. ..| .+..+++|++|++++|.+.... . ..++|+.|++++|.+..... .+++|+.|++
T Consensus 214 ~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~-~--~~~~L~~L~l~~N~l~~l~~----~~~~L~~L~l 284 (454)
T 1jl5_A 214 PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLP-D--LPPSLEALNVRDNYLTDLPE----LPQSLTFLDV 284 (454)
T ss_dssp CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCC-S--CCTTCCEEECCSSCCSCCCC----CCTTCCEEEC
T ss_pred cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCccc-c--cccccCEEECCCCcccccCc----ccCcCCEEEC
Confidence 247777777777766 344 3667777777777777665422 2 23567777777766654221 2356677777
Q ss_pred cCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeeccccccccc
Q 047676 392 SHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQ 471 (576)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 471 (576)
++|.+.+... ..++|++|++++|++.+. + ...++|++|++++|++.+ .|.. +++|+.|++++|.+...
T Consensus 285 s~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~---~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l 352 (454)
T 1jl5_A 285 SENIFSGLSE----LPPNLYYLNASSNEIRSL-C---DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV 352 (454)
T ss_dssp CSSCCSEESC----CCTTCCEEECCSSCCSEE-C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC
T ss_pred cCCccCcccC----cCCcCCEEECcCCcCCcc-c---CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc
Confidence 7666653211 125666666666666531 1 112466666666666653 2322 35666666666665532
Q ss_pred CCcccccCCCCCEeeCCCCcCcc--ccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcc--cCCcc
Q 047676 472 LSPKLGLLVQLEHLDLSSNRLSN--SIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGR--EIPSQ 547 (576)
Q Consensus 472 ~~~~~~~~~~L~~L~ls~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~ 547 (576)
+. .+++|++|++++|.+++ .+|.. +..|. .|.+.+.+|. .+++|++|++++|++.+ .+|.
T Consensus 353 -p~---~l~~L~~L~L~~N~l~~l~~ip~~------l~~L~--~n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~iP~- 416 (454)
T 1jl5_A 353 -PE---LPQNLKQLHVEYNPLREFPDIPES------VEDLR--MNSHLAEVPE---LPQNLKQLHVETNPLREFPDIPE- 416 (454)
T ss_dssp -CC---CCTTCCEEECCSSCCSSCCCCCTT------CCEEE--CCC----------------------------------
T ss_pred -cc---hhhhccEEECCCCCCCcCCCChHH------HHhhh--hccccccccc---ccCcCCEEECCCCcCCccccchh-
Confidence 22 35566666666666654 22222 22222 2333333332 23788888888888866 4443
Q ss_pred CcCCCCCceEeCcCCccccccCcc
Q 047676 548 ICIMQSLEKLNLSHNSLSGVIPRC 571 (576)
Q Consensus 548 l~~~~~L~~L~l~~~~l~~~~p~~ 571 (576)
+++.|.+.+|.+.+.+|-.
T Consensus 417 -----sl~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 417 -----SVEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp ------------------------
T ss_pred -----hHhheeCcCcccCCccccC
Confidence 4567778888877766643
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6e-35 Score=297.93 Aligned_cols=346 Identities=29% Similarity=0.377 Sum_probs=263.6
Q ss_pred CCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCccccccCCccccCCCCCCEE
Q 047676 167 NLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFL 246 (576)
Q Consensus 167 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 246 (576)
.++++++|++.++.+.. .+ .+..+++|+.|++++|.+.+. +. +..+++|++|++++|.+....+ +..+++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 35788999999888763 33 477888999999999988754 33 8888999999999988876644 8888999999
Q ss_pred EccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCccc
Q 047676 247 ELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLS 326 (576)
Q Consensus 247 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 326 (576)
++++|.+....+ +..+++|++|++++|.+... + .+..+++|+.|++.+ .+... ..+..+++|++|++++|.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCC
Confidence 999998876533 77888999999998888753 3 478888999998864 33322 23778888999999888876
Q ss_pred ccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCC
Q 047676 327 GAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGR 406 (576)
Q Consensus 327 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 406 (576)
.. ..+..+++|++|++++|.+....+ +..+++|+.|++++|.++.. ..+..+++|+.|++++|.+....+ +..
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred CC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 43 347788888888888888765544 66678888888888887754 456778888888888888765433 677
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEee
Q 047676 407 CPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLD 486 (576)
Q Consensus 407 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 486 (576)
+++|++|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|+
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 8888888888888774432 7778888888888888765433 6778888888888888775533 66788888888
Q ss_pred CCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcc
Q 047676 487 LSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGR 542 (576)
Q Consensus 487 ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 542 (576)
+++|.+++. ..+..+++|+.|++++|++++..| +..+++|++|++++|++++
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 888887754 357778888888888888876655 6778888888888887765
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.9e-35 Score=298.52 Aligned_cols=407 Identities=26% Similarity=0.294 Sum_probs=196.7
Q ss_pred CCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEE
Q 047676 96 ISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILY 175 (576)
Q Consensus 96 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 175 (576)
..+|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++|+.+++.+|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 46778888887777 57777777888888888887777777777777777777777666642 4578888
Q ss_pred eecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcc
Q 047676 176 LYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSG 255 (576)
Q Consensus 176 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 255 (576)
+++|.+++ .|. -.++|+.|++++|.+++ +|.. .++|++|++++|.++..... .++|++|++++|.+..
T Consensus 78 l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 78 LNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEK 145 (454)
T ss_dssp CTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSS
T ss_pred ecCCcccc-CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCC
Confidence 88887764 222 13577888888887774 5542 36778888877776643211 1577777777777765
Q ss_pred cCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhccc
Q 047676 256 PIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQN 335 (576)
Q Consensus 256 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 335 (576)
.+ .+..+++|++|++++|.+++ +|.. .++|++|++++|.+.. .+ .+..+++|++|++++|.+.+ .|..
T Consensus 146 -lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~--- 213 (454)
T 1jl5_A 146 -LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL--- 213 (454)
T ss_dssp -CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---
T ss_pred -Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---
Confidence 33 46777777777777777664 3322 2467777777776664 22 46667777777777766653 2221
Q ss_pred CCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEc
Q 047676 336 LVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDF 415 (576)
Q Consensus 336 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 415 (576)
.++|++|++++|.+. .++.+..+++|+.|++++|.+..... .+++|+.|++++|.+.+. +. .+++|++|++
T Consensus 214 ~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l 284 (454)
T 1jl5_A 214 PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDV 284 (454)
T ss_dssp CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEEC
T ss_pred cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCccccc-Cc---ccCcCCEEEC
Confidence 236666666666655 33345566666666666665553211 235566666666555431 11 1355556666
Q ss_pred cCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCc-cCCceeecccccccccCCcccccCCCCCEeeCCCCcCcc
Q 047676 416 STNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKL-SFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSN 494 (576)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~ 494 (576)
++|++.+. +. ..++|+.|++++|.+.+. ..+ ++|++|++++|++.+. +. .+++|++|++++|.++.
T Consensus 285 s~N~l~~l-~~---~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~L~~N~l~~ 351 (454)
T 1jl5_A 285 SENIFSGL-SE---LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIEL-PA---LPPRLERLIASFNHLAE 351 (454)
T ss_dssp CSSCCSEE-SC---CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC
T ss_pred cCCccCcc-cC---cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCccccc-cc---cCCcCCEEECCCCcccc
Confidence 55555431 11 124555555555554421 112 3455555555554431 11 13455555555555542
Q ss_pred ccchhccCCCCCCEeeCCCCcCCC--CccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCcccc--ccCc
Q 047676 495 SIPESLGNLVKLHYLNLSNNHFSR--EIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSG--VIPR 570 (576)
Q Consensus 495 ~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~--~~p~ 570 (576)
+|. .+++|++|++++|++++ .+|.. +..|. .|...+.+|. .+++|+.|++++|++++ .+|.
T Consensus 352 -lp~---~l~~L~~L~L~~N~l~~l~~ip~~------l~~L~--~n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 352 -VPE---LPQNLKQLHVEYNPLREFPDIPES------VEDLR--MNSHLAEVPE---LPQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp -CCC---CCTTCCEEECCSSCCSSCCCCCTT------CCEEE--CCC---------------------------------
T ss_pred -ccc---hhhhccEEECCCCCCCcCCCChHH------HHhhh--hccccccccc---ccCcCCEEECCCCcCCccccchh
Confidence 222 23455555555555543 22221 22221 2333333333 13899999999999997 8998
Q ss_pred ccccc
Q 047676 571 CFEEM 575 (576)
Q Consensus 571 ~~~~~ 575 (576)
++..+
T Consensus 417 sl~~L 421 (454)
T 1jl5_A 417 SVEDL 421 (454)
T ss_dssp -----
T ss_pred hHhhe
Confidence 88765
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.8e-34 Score=289.70 Aligned_cols=346 Identities=28% Similarity=0.361 Sum_probs=289.5
Q ss_pred CCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEE
Q 047676 143 RLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVIL 222 (576)
Q Consensus 143 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 222 (576)
.+++|+.|++.++.+..+ + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 467899999999988765 3 47789999999999999875543 8899999999999999885443 8899999999
Q ss_pred EccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEccccccc
Q 047676 223 FLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLS 302 (576)
Q Consensus 223 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 302 (576)
++++|.++...+ +..+++|++|++++|.+... ..+..+++|++|++.+ .+... ..+..+++|+.|++++|.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCC
Confidence 999998887643 88999999999999988754 3478899999999964 34322 23788999999999999887
Q ss_pred ccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccC
Q 047676 303 NSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYI 382 (576)
Q Consensus 303 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 382 (576)
.. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+... +.+..+++|+.|++++|.+....+ +..
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 53 357889999999999999876544 67799999999999988753 457788999999999999886543 888
Q ss_pred CCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceee
Q 047676 383 YPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLI 462 (576)
Q Consensus 383 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 462 (576)
+++|+.|++++|.+....+ +..+++|++|++++|++.+..+ +..+++|+.|++++|++.+..+ +..+++|++|+
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 9999999999999875543 7889999999999999885433 7889999999999999886655 77899999999
Q ss_pred cccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCC
Q 047676 463 LAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSR 518 (576)
Q Consensus 463 l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 518 (576)
+++|.+.+. ..+..+++|+.|++++|.+++..| +..+++|+.|++++|++++
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 999998765 568889999999999999987766 7889999999999999975
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-33 Score=285.90 Aligned_cols=377 Identities=21% Similarity=0.234 Sum_probs=257.9
Q ss_pred CCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcccCCcc
Q 047676 109 FFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSE 188 (576)
Q Consensus 109 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 188 (576)
.....+..++++++|++|++++|.+++ +| .+..+++|++|++++|.+..+ .+..+++|++|++++|.+++. .
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~---~ 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL---D 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC---C
T ss_pred cCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee---e
Confidence 333455578889999999999999984 45 688999999999999998876 288899999999999988754 3
Q ss_pred ccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCcc
Q 047676 189 IGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLG 268 (576)
Q Consensus 189 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 268 (576)
+..+++|+.|++++|.+++ ++ +..+++|++|++++|.++.. .+..+++|+.|++++|...... .+..+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 7888899999999988875 33 77888888888888888764 2677888888888888543222 466778888
Q ss_pred EEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCc
Q 047676 269 VLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQ 348 (576)
Q Consensus 269 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 348 (576)
+|++++|.+++ ++ +..+++|+.|++++|.++.. .+..+++|++|++++|.+.+ .| +..+++|+.|++++|.
T Consensus 174 ~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 174 TLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp EEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred EEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCc
Confidence 88888888775 33 66777888888888877643 36667777777777777765 33 5666777777777776
Q ss_pred ccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccc
Q 047676 349 FQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEI 428 (576)
Q Consensus 349 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 428 (576)
+.... ...+++|+.+++..+ +|+.|++++|......+ +..|++|+.|++++|...+.+|.
T Consensus 245 l~~~~--~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~-- 304 (457)
T 3bz5_A 245 LTELD--VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC-- 304 (457)
T ss_dssp CSCCC--CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC--
T ss_pred CCCcC--HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc--
Confidence 65432 345566666665543 34455566665443332 35567777777777665544442
Q ss_pred cCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCE
Q 047676 429 GYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHY 508 (576)
Q Consensus 429 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~ 508 (576)
..++|+.|++++| ++|++|++++|++.+. .+..+++|+.|++++|.+++ +++|+.
T Consensus 305 -~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~ 359 (457)
T 3bz5_A 305 -QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGK 359 (457)
T ss_dssp -TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGG
T ss_pred -CCCcceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------cccccc
Confidence 2344444444433 5677777777777653 26667777777777777764 245566
Q ss_pred eeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcC-CCCCceEeCc
Q 047676 509 LNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICI-MQSLEKLNLS 560 (576)
Q Consensus 509 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~ 560 (576)
|.+++|.+.+. ..+..|+.+++++|.+++.+|..+.. ..++.....+
T Consensus 360 L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~ 407 (457)
T 3bz5_A 360 IPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPG 407 (457)
T ss_dssp SSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEES
T ss_pred ccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCC
Confidence 66677766543 23456677777777777777765433 2344344333
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-33 Score=287.00 Aligned_cols=320 Identities=21% Similarity=0.231 Sum_probs=266.6
Q ss_pred cEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccc
Q 047676 220 VILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFN 299 (576)
Q Consensus 220 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 299 (576)
+.++.++..++.+. ..+ .++++.|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip-~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVP-EGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCC-SCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCC-CCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46777777666543 333 368999999999998887888999999999999999998877888999999999999999
Q ss_pred cccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCC-CCCCCCCcEEEccCccceeecCc
Q 047676 300 KLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLNRNYLTGNISE 378 (576)
Q Consensus 300 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~ 378 (576)
.+.......|..+++|++|++++|.+....+..+..+++|++|++++|.+....+. +..+++|+.|++++|.++.....
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 98877666788899999999999998888888888899999999999988766554 77888999999999888877777
Q ss_pred cccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCC
Q 047676 379 SFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFF 458 (576)
Q Consensus 379 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 458 (576)
.+..+++|+.|++++|.+.......|..+++|++|++++|...+.++.......+|+.|++++|.+.+..+..+..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 78888999999999988887777778888999999998888776666666666789999998888875555678888888
Q ss_pred ceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCC
Q 047676 459 IKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYN 538 (576)
Q Consensus 459 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 538 (576)
+.|++++|.+.......+..+++|++|++++|.+.+..+..|..+++|+.|++++|+++...+..|..+++|++|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 99999888888777777888888888999888888777888888888889999888888777777888888888888888
Q ss_pred cCcc
Q 047676 539 FLGR 542 (576)
Q Consensus 539 ~~~~ 542 (576)
++..
T Consensus 331 ~l~c 334 (477)
T 2id5_A 331 PLAC 334 (477)
T ss_dssp CEEC
T ss_pred CccC
Confidence 8854
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.6e-33 Score=280.22 Aligned_cols=412 Identities=17% Similarity=0.173 Sum_probs=316.3
Q ss_pred ccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccC
Q 047676 87 GNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLG 166 (576)
Q Consensus 87 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 166 (576)
...+..+.++++|++|++++|.+.+ +| .+..+++|++|++++|.+++ +| ++.+++|++|++++|.+... .+.
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~---~~~ 103 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL---DVT 103 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC---CCT
T ss_pred cccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee---ecC
Confidence 3444568889999999999999985 45 69999999999999999985 44 88999999999999998876 388
Q ss_pred CCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCccccccCCccccCCCCCCEE
Q 047676 167 NLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFL 246 (576)
Q Consensus 167 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 246 (576)
++++|++|++++|.+++. .+..+++|+.|++++|.+++. .+..+++|++|++++|...... .+..+++|+.|
T Consensus 104 ~l~~L~~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp TCTTCCEEECCSSCCSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 999999999999999853 288999999999999999863 3788999999999999543332 47889999999
Q ss_pred EccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCccc
Q 047676 247 ELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLS 326 (576)
Q Consensus 247 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 326 (576)
++++|.+.... +..+++|+.|++++|.+++. .+..+++|+.|++++|+++.. + +..+++|+.|++++|.+.
T Consensus 176 ~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 176 DCSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS
T ss_pred ECCCCccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCC
Confidence 99999998642 77889999999999999864 478899999999999999863 3 788999999999999998
Q ss_pred ccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCC
Q 047676 327 GAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGR 406 (576)
Q Consensus 327 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 406 (576)
+.. +..+++|+.++++.+ +|+.+++++|.....++ +..+++|+.|++++|......+. .
T Consensus 247 ~~~---~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~ 305 (457)
T 3bz5_A 247 ELD---VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---Q 305 (457)
T ss_dssp CCC---CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---T
T ss_pred CcC---HHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---C
Confidence 653 456888999998765 45667777777654433 56789999999999986544432 3
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEee
Q 047676 407 CPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLD 486 (576)
Q Consensus 407 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 486 (576)
.++|+.|++++ +++|++|++++|++.+. .+..+++|+.|++++|++.+ ++.|..|+
T Consensus 306 ~~~L~~L~l~~-------------~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~ 361 (457)
T 3bz5_A 306 AAGITELDLSQ-------------NPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIP 361 (457)
T ss_dssp TCCCSCCCCTT-------------CTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSS
T ss_pred CCcceEechhh-------------cccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------cccccccc
Confidence 45566655544 46899999999998874 38888999999999998874 35677778
Q ss_pred CCCCcCccccchhccCCCCCCEeeCCCCcCCCCcccccc-CCCCCCEEeCCCCcCcccC-----CccCc--CCCCCceEe
Q 047676 487 LSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLE-ELIHLSELDLSYNFLGREI-----PSQIC--IMQSLEKLN 558 (576)
Q Consensus 487 ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~-----~~~l~--~~~~L~~L~ 558 (576)
+++|.+.+. ..+..|+.+++++|++++.+|..+. ...+......+.+..-... ...+. .-.-+....
T Consensus 362 l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~~~~~y~~~~~~i~~k~~~~~~~~~~y~~~ 436 (457)
T 3bz5_A 362 ALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFT 436 (457)
T ss_dssp GGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEESSSEEEETTTTEEEESSCCTTSCEECEEEE
T ss_pred ccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCCCCccccCCCCeeEEEeccCCCceEEEEEe
Confidence 888888754 3456788899999999988876543 3345555554443221100 01111 011222344
Q ss_pred CcCCccccccCcccc
Q 047676 559 LSHNSLSGVIPRCFE 573 (576)
Q Consensus 559 l~~~~l~~~~p~~~~ 573 (576)
..++.++|.|+..+.
T Consensus 437 ~~~~~fsG~i~~p~~ 451 (457)
T 3bz5_A 437 SENGAIVGTVTTPFE 451 (457)
T ss_dssp CTTSSEEEEEEEEBC
T ss_pred cCCcEEeeEeccccc
Confidence 456788888876654
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=286.48 Aligned_cols=350 Identities=21% Similarity=0.183 Sum_probs=299.0
Q ss_pred ceeeccCCcCCCcCCccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCC
Q 047676 196 SRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNN 275 (576)
Q Consensus 196 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 275 (576)
+.++.++..++ .+|..+. ++++.|++++|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46777777766 5665543 68999999999999998889999999999999999999888889999999999999999
Q ss_pred cccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCC
Q 047676 276 LLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN 355 (576)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 355 (576)
.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 99876666789999999999999999988888899999999999999999988888999999999999999998765544
Q ss_pred -CCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCC
Q 047676 356 -LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQL 434 (576)
Q Consensus 356 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 434 (576)
+..+++|+.|++.+|.+.......|..+++|+.|++++|......+.......+|++|++++|++....+..+..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 7889999999999999999888899999999999999988776666555566799999999999985554678999999
Q ss_pred CEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCC
Q 047676 435 EVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNN 514 (576)
Q Consensus 435 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~ 514 (576)
+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 99999999998888888999999999999999999888888999999999999999999877788899999999999999
Q ss_pred cCCCCccccccCCCCCCEEeCCCCcCcccCCccCc
Q 047676 515 HFSREIPIKLEELIHLSELDLSYNFLGREIPSQIC 549 (576)
Q Consensus 515 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 549 (576)
++...-. ...-......+.+.++......|..+.
T Consensus 331 ~l~c~c~-~~~~~~~~~~~~~~~~~~~C~~p~~~~ 364 (477)
T 2id5_A 331 PLACDCR-LLWVFRRRWRLNFNRQQPTCATPEFVQ 364 (477)
T ss_dssp CEECSGG-GHHHHTTTTSSCCTTCCCBEEESGGGT
T ss_pred CccCccc-hHhHHhhhhccccCccCceeCCchHHc
Confidence 9963322 111123344455566655444454443
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.7e-32 Score=269.15 Aligned_cols=306 Identities=25% Similarity=0.343 Sum_probs=201.7
Q ss_pred cCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCe
Q 047676 214 GNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSE 293 (576)
Q Consensus 214 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 293 (576)
..+++|++|+++++.+... .++..+++|++|++++|.+....+ +..+++|++|++++|.++. ++ .+..
T Consensus 41 ~~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~------ 108 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQN------ 108 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTT------
T ss_pred hhcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcC------
Confidence 3455566666666555443 225555555666655555543322 4455555555555554442 11 3444
Q ss_pred EEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccce
Q 047676 294 LNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLT 373 (576)
Q Consensus 294 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 373 (576)
+++|++|++++|.+....+ +..+++|+.|++++|......+.+..+++|+.|++++|.+.
T Consensus 109 ------------------l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (347)
T 4fmz_A 109 ------------------LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK 168 (347)
T ss_dssp ------------------CTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred ------------------CCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC
Confidence 4445555554444443221 44555555555555544444444556666666666666655
Q ss_pred eecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCccccc
Q 047676 374 GNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELG 453 (576)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 453 (576)
.... +..+++|+.|++++|.+.+... +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+.+..+ +.
T Consensus 169 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~ 240 (347)
T 4fmz_A 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240 (347)
T ss_dssp CCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred Cchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence 4332 6667778888888777764332 6678888888888887774433 6778888888888888764433 77
Q ss_pred CccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEE
Q 047676 454 KLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSEL 533 (576)
Q Consensus 454 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 533 (576)
.+++|++|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|++++..+..+..+++|++|
T Consensus 241 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred cCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 888888888888887754 4577888899999999988754 357788899999999999988877888888999999
Q ss_pred eCCCCcCcccCCccCcCCCCCceEeCcCCccc
Q 047676 534 DLSYNFLGREIPSQICIMQSLEKLNLSHNSLS 565 (576)
Q Consensus 534 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 565 (576)
++++|++.+..| +..+++|++|++++|+++
T Consensus 317 ~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 317 FLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999876655 778889999999999876
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.1e-32 Score=270.68 Aligned_cols=311 Identities=18% Similarity=0.150 Sum_probs=212.3
Q ss_pred CCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEE
Q 047676 71 SFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNL 150 (576)
Q Consensus 71 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 150 (576)
.++++++|+++++.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 45788999999988875555557888999999999998886677788889999999999998887777778888889999
Q ss_pred EccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCcccc
Q 047676 151 TLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLF 230 (576)
Q Consensus 151 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 230 (576)
++++|.+..+.+..+.++++|++|++++|.++...+..+..+++|+.|++++|.+++. .+..+++|+.+++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 9988888877666678888888888888888766666677777777777777776632 2445566666666666544
Q ss_pred ccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCcccc
Q 047676 231 GLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLS 310 (576)
Q Consensus 231 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 310 (576)
. +...++|+.|++++|.+..... ...++|+.|++++|.+... ..+.
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~~~---------------------------~~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVVRG---------------------------PVNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEEEC---------------------------CCCSSCCEEECCSSCCCCC--GGGG
T ss_pred c-----cCCCCcceEEECCCCeeeeccc---------------------------cccccccEEECCCCCCccc--HHHc
Confidence 2 2223455555555555443211 1124455555555544422 3344
Q ss_pred CCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEE
Q 047676 311 NLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFID 390 (576)
Q Consensus 311 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 390 (576)
.+++|++|++++|.+.+..+..+..+++|+.|++++|.+.........+++|+.|++++|.+... +..+..+++|+.|+
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLY 324 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEE
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceec-CccccccCcCCEEE
Confidence 55566666666665555555566666666666666666655444455667777777777766633 33455677888888
Q ss_pred ccCCccccccCcccCCCCCCCEEEccCCcccc
Q 047676 391 LSHNNFYGEISSDWGRCPKLDSLDFSTNNITG 422 (576)
Q Consensus 391 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 422 (576)
+++|.+... .+..+++|++|++++|++..
T Consensus 325 L~~N~i~~~---~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 325 LDHNSIVTL---KLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCSSCCCCC---CCCTTCCCSEEECCSSCEEH
T ss_pred CCCCcccee---CchhhccCCEEEcCCCCccc
Confidence 888877644 25677888888888887764
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.6e-31 Score=262.32 Aligned_cols=308 Identities=29% Similarity=0.380 Sum_probs=228.1
Q ss_pred cccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCc
Q 047676 188 EIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNL 267 (576)
Q Consensus 188 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L 267 (576)
.+..+++|+.++++++.+.. ++ .+..+++|++|++++|.++...+ +..+++|++|++++|.+... ..+..+++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred cchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 34568899999999999874 44 38889999999999999887644 89999999999999999864 468899999
Q ss_pred cEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCC
Q 047676 268 GVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNN 347 (576)
Q Consensus 268 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 347 (576)
++|++++|.+....+ +..+++|+.|++++|..... ...+..+++|++|++++|.+....+ +..+++|++|++++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 999999999885433 77888999999988855432 2336677777777777776654322 555666666666655
Q ss_pred cccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCcc
Q 047676 348 QFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSE 427 (576)
Q Consensus 348 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 427 (576)
.+.. ... +..+++|+.+++++|.+..... +..+++|++|++++|++.+..+
T Consensus 188 ~l~~-----------------------~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 188 QIED-----------------------ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCC-----------------------CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred cccc-----------------------ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 5432 211 4455666666666666553322 5667777777777777763322
Q ss_pred ccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCC
Q 047676 428 IGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLH 507 (576)
Q Consensus 428 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~ 507 (576)
+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 66777777777777777643 3567778888888888877654 4577888999999999998878888888899999
Q ss_pred EeeCCCCcCCCCccccccCCCCCCEEeCCCCcCc
Q 047676 508 YLNLSNNHFSREIPIKLEELIHLSELDLSYNFLG 541 (576)
Q Consensus 508 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 541 (576)
+|++++|++++..| +..+++|++|++++|+++
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999999976655 778899999999999874
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.6e-31 Score=263.90 Aligned_cols=311 Identities=23% Similarity=0.208 Sum_probs=198.9
Q ss_pred CCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEE
Q 047676 216 LSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELN 295 (576)
Q Consensus 216 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 295 (576)
+++++.++++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 35556666666655555555555566666666666666555555556666666666666666555555556666666666
Q ss_pred cccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceee
Q 047676 296 LGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGN 375 (576)
Q Consensus 296 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 375 (576)
+++|.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.+++++|.+...
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSEE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeeccccccccc
Confidence 666666544444455666666666666666655555566666666666666665433 234456666666666655432
Q ss_pred cCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCc
Q 047676 376 ISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKL 455 (576)
Q Consensus 376 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 455 (576)
...++|+.|++++|.+..... ..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+
T Consensus 202 -----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 202 -----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp -----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred -----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 234567777777776654422 2346777777777777643 456777778888888777776667777777
Q ss_pred cCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeC
Q 047676 456 SFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDL 535 (576)
Q Consensus 456 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 535 (576)
++|++|++++|.+... +..+..+++|++|++++|.+. .++..+..+++|++|++++|+++.. + +..+++|++|++
T Consensus 272 ~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l 346 (390)
T 3o6n_A 272 QRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL 346 (390)
T ss_dssp SSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred ccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEc
Confidence 7788888877777643 233456778888888888777 4455566777888888888887644 2 566778888888
Q ss_pred CCCcCccc
Q 047676 536 SYNFLGRE 543 (576)
Q Consensus 536 ~~~~~~~~ 543 (576)
++|++...
T Consensus 347 ~~N~~~~~ 354 (390)
T 3o6n_A 347 SHNDWDCN 354 (390)
T ss_dssp CSSCEEHH
T ss_pred CCCCccch
Confidence 88877543
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=5.5e-31 Score=276.74 Aligned_cols=311 Identities=18% Similarity=0.157 Sum_probs=213.0
Q ss_pred CCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEE
Q 047676 71 SFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNL 150 (576)
Q Consensus 71 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 150 (576)
.+++++.++++++.+....+..|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+.+..|..|+.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 35688999999998876666667888999999999998887777788899999999999999887777778889999999
Q ss_pred EccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCcccc
Q 047676 151 TLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLF 230 (576)
Q Consensus 151 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 230 (576)
++++|.+..+++..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+. .+..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence 9999988877777778888888888888888877777777788888888888777643 2445666777777666554
Q ss_pred ccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCcccc
Q 047676 231 GLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLS 310 (576)
Q Consensus 231 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 310 (576)
. +...+.|+.|++++|.+....... .++|+.|++++|.+++ +..+.
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--------------------------~~~l~ 251 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--------------------------TAWLL 251 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--------------------------CGGGG
T ss_pred c-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--------------------------Chhhc
Confidence 3 233445666666666554322211 1344555555444432 13344
Q ss_pred CCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEE
Q 047676 311 NLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFID 390 (576)
Q Consensus 311 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 390 (576)
.+++|++|++++|.+.+..|..+..+++|+.|++++|.+......+..+++|+.|++++|.+.. ++..+..+++|+.|+
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLY 330 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEE
Confidence 4555555555555555555555555666666666666655544445556667777777766663 334456677777777
Q ss_pred ccCCccccccCcccCCCCCCCEEEccCCcccc
Q 047676 391 LSHNNFYGEISSDWGRCPKLDSLDFSTNNITG 422 (576)
Q Consensus 391 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 422 (576)
+++|.+... .+..+++|+.|++++|++..
T Consensus 331 L~~N~l~~~---~~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 331 LDHNSIVTL---KLSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCSSCCCCC---CCCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCCc---ChhhcCCCCEEEeeCCCCCC
Confidence 777776543 25667778888888777653
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.9e-30 Score=271.24 Aligned_cols=309 Identities=23% Similarity=0.204 Sum_probs=173.8
Q ss_pred CCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEc
Q 047676 217 SNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNL 296 (576)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 296 (576)
.+++.++++++.+....+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+++..+..++.+++|+.|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 34444444444444444444444455555555555544444444444555555555555544444444445555555555
Q ss_pred ccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeec
Q 047676 297 GFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNI 376 (576)
Q Consensus 297 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 376 (576)
++|.+....+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+... .+..+++|+.+++++|.+...
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n~l~~l- 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTL- 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSSCCSEE-
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccCccccc-
Confidence 55554433333344555555555555555544444455555555555555554432 133445555555555554432
Q ss_pred CccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCcc
Q 047676 377 SESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLS 456 (576)
Q Consensus 377 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 456 (576)
...++|+.|++++|.+...... ..++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..+..++
T Consensus 208 ----~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 208 ----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp ----ECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred ----cCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 2345566666666665533221 13567777777776664 24566677777777777777666666677777
Q ss_pred CCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCC
Q 047676 457 FFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLS 536 (576)
Q Consensus 457 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 536 (576)
+|+.|++++|.+... +..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++... +..+++|+.|+++
T Consensus 279 ~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~ 353 (597)
T 3oja_B 279 RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLS 353 (597)
T ss_dssp SCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECC
T ss_pred CCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEee
Confidence 777777777766643 333455677777777777776 45555666777777777777775432 5556777777777
Q ss_pred CCcCcc
Q 047676 537 YNFLGR 542 (576)
Q Consensus 537 ~~~~~~ 542 (576)
+|++.+
T Consensus 354 ~N~~~~ 359 (597)
T 3oja_B 354 HNDWDC 359 (597)
T ss_dssp SSCEEH
T ss_pred CCCCCC
Confidence 777654
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.2e-29 Score=242.94 Aligned_cols=289 Identities=24% Similarity=0.256 Sum_probs=221.6
Q ss_pred CccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEcc
Q 047676 266 NLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLG 345 (576)
Q Consensus 266 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 345 (576)
+++.++++++.+. .+|..+ .++++.|++++|.++...+..+..+++|++|++++|.+....|..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4556666655554 233322 2566667777776665555566677777777777777766666777777778888887
Q ss_pred CCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCcccc--ccCcccCCCCCCCEEEccCCccccc
Q 047676 346 NNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYG--EISSDWGRCPKLDSLDFSTNNITGN 423 (576)
Q Consensus 346 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~ 423 (576)
+|.+......+. ++|+.|++++|.+.......+..+++|+.|++++|.+.. .....+..+++|++|++++|.+. .
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~ 185 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T 185 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-c
Confidence 777664433332 688888888888887777778889999999999998864 45567888999999999999887 4
Q ss_pred CCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCC
Q 047676 424 IPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNL 503 (576)
Q Consensus 424 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l 503 (576)
++..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence 454433 78999999999998887888999999999999999998877777889999999999999998 677778889
Q ss_pred CCCCEeeCCCCcCCCCccccccC------CCCCCEEeCCCCcCcc--cCCccCcCCCCCceEeCcCCc
Q 047676 504 VKLHYLNLSNNHFSREIPIKLEE------LIHLSELDLSYNFLGR--EIPSQICIMQSLEKLNLSHNS 563 (576)
Q Consensus 504 ~~L~~L~l~~~~~~~~~~~~~~~------l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~ 563 (576)
++|++|++++|++++..+..|.. ..+++.|++++|++.. ..|..|..+.+++.+++++|+
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 99999999999998777666643 3789999999998853 556778889999999999884
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.2e-29 Score=243.90 Aligned_cols=288 Identities=24% Similarity=0.278 Sum_probs=227.0
Q ss_pred CccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEcc
Q 047676 266 NLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLG 345 (576)
Q Consensus 266 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 345 (576)
+++.++++++.+. .+|..+ .++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4666666666665 334333 2567777777777766666667777778888887777777767777888888888888
Q ss_pred CCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCcccc--ccCcccCCCCCCCEEEccCCccccc
Q 047676 346 NNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYG--EISSDWGRCPKLDSLDFSTNNITGN 423 (576)
Q Consensus 346 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~ 423 (576)
+|.+....+.+. ++|+.|++++|.+.......+..+++|+.|++++|.+.. ..+..+..+ +|++|++++|++.+
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 887764443333 788999999988887777778899999999999998863 455666667 99999999999884
Q ss_pred CCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCC
Q 047676 424 IPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNL 503 (576)
Q Consensus 424 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l 503 (576)
+|..+. ++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 554443 78999999999998877788999999999999999998877778889999999999999998 677778899
Q ss_pred CCCCEeeCCCCcCCCCccccccC------CCCCCEEeCCCCcCc--ccCCccCcCCCCCceEeCcCCc
Q 047676 504 VKLHYLNLSNNHFSREIPIKLEE------LIHLSELDLSYNFLG--REIPSQICIMQSLEKLNLSHNS 563 (576)
Q Consensus 504 ~~L~~L~l~~~~~~~~~~~~~~~------l~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~ 563 (576)
++|+.|++++|+++...+..|.. ..+|+.|++++|++. +..|..+..+++|+.+++++|+
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 99999999999998777666654 367899999999986 5667788889999999999884
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1e-30 Score=252.88 Aligned_cols=278 Identities=19% Similarity=0.204 Sum_probs=170.1
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCccceeeeCC---------CCCEEEEEcCCCCcccccCCcccCCC
Q 047676 2 EESHALLRWKTSLQNHNNGSSLSSWTVNNVTKIGPCAWVGIHCNH---------GGRVNSINLTNIGLKGTLHDFSFSSF 72 (576)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~---------~~~i~~l~l~~~~~~~~~~~~~~~~~ 72 (576)
.|+++|++||.++..++ ..+...|........++|.|.|+.|.. ..+++.|+++++.+. .++. .+.++
T Consensus 27 ~~~~aLl~~k~~~~~~~-~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~-~l~~l 103 (328)
T 4fcg_A 27 PYHDVLSQWQRHYNADR-NRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD-QAFRL 103 (328)
T ss_dssp CHHHHHHHHHHHHHHCC-TTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS-CGGGG
T ss_pred hHHHHHHHHHHhccCCc-hhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh-hhhhC
Confidence 57889999999996553 455677831122467789999998853 245566666665555 4444 34445
Q ss_pred CCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEc
Q 047676 73 PHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTL 152 (576)
Q Consensus 73 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 152 (576)
++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+.++++|++|++++|...+.+|..+...
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~-------- 173 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST-------- 173 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE--------
T ss_pred CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc--------
Confidence 55555555555555 45555555555555555555555 445555555555555555555444444443320
Q ss_pred cccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCcccccc
Q 047676 153 YANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGL 232 (576)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 232 (576)
..+..+.++++|++|++++|.++ ..|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+...
T Consensus 174 -------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 174 -------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN 244 (328)
T ss_dssp -------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCB
T ss_pred -------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhh
Confidence 00011223566666666666655 45555666666666666666665 3444566666677777766666666
Q ss_pred CCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccc
Q 047676 233 IPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKL 301 (576)
Q Consensus 233 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 301 (576)
.+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+.+|..+..+++++.+++..+.+
T Consensus 245 ~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 666666677777777777666656666666777777777777776667777777777777777765544
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.8e-29 Score=242.07 Aligned_cols=287 Identities=24% Similarity=0.312 Sum_probs=236.7
Q ss_pred EEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCC
Q 047676 50 VNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLS 129 (576)
Q Consensus 50 i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 129 (576)
++.++++++++. .+|. .+ .+++++|++++|.+.+..+.+|.++++|++|++++|.+.+..|..|.++++|++|+++
T Consensus 35 l~~l~~~~~~l~-~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp TTEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CCEEECCCCCcc-ccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 345666666665 4444 22 3689999999999987778889999999999999999998889999999999999999
Q ss_pred CCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcc--cCCccccCCCccceeeccCCcCCC
Q 047676 130 KNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSG--SIPSEIGNLKFLSRTALSHNKLSG 207 (576)
Q Consensus 130 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~ 207 (576)
+|.++ .+|..+. ++|++|++++|.+..+.+..+.++++|++|++++|.++. ..+..+..+ +|+.|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99998 6666554 899999999999998888889999999999999999863 566777777 99999999999884
Q ss_pred cCCccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccC
Q 047676 208 SIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGN 287 (576)
Q Consensus 208 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 287 (576)
+|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 555443 78999999999999888888999999999999999998877778888999999999999988 57777888
Q ss_pred CCCCCeEEcccccccccCCccccC------CCCCcEEEcccCccc--ccCchhcccCCCCcEEEccCCc
Q 047676 288 LKFLSELNLGFNKLSNSIPVSLSN------LTNLVFLSFYQNSLS--GAIPKEYQNLVKLTKLLLGNNQ 348 (576)
Q Consensus 288 l~~L~~L~L~~~~~~~~~~~~~~~------l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~ 348 (576)
+++|+.|++++|.++......+.. .+.++.+++.+|++. ...+..|..+++|+.+++++|.
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999999888766655544 366888888888776 4566677778888888887664
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.2e-28 Score=239.78 Aligned_cols=286 Identities=23% Similarity=0.297 Sum_probs=229.5
Q ss_pred EEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCC
Q 047676 51 NSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSK 130 (576)
Q Consensus 51 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 130 (576)
+.++++++.+. .+|. .+ .+++++|++++|.+.+..+.+|.++++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 34 ~~l~~~~~~l~-~lp~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 34 RVVQCSDLGLE-KVPK-DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TEEECTTSCCC-SCCC-SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred eEEEecCCCcc-ccCc-cC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 44555655554 3333 22 36899999999999877777899999999999999999978899999999999999999
Q ss_pred CcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcc--cCCccccCCCccceeeccCCcCCCc
Q 047676 131 NKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSG--SIPSEIGNLKFLSRTALSHNKLSGS 208 (576)
Q Consensus 131 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~ 208 (576)
|.++ .+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+.. ..+..+..+++|+.|++++|.++ .
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~ 185 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T 185 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-c
Confidence 9988 5665554 799999999999998888889999999999999998863 56677888999999999999887 4
Q ss_pred CCccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCC
Q 047676 209 IPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNL 288 (576)
Q Consensus 209 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 288 (576)
+|..+. ++|++|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++ .+|..+..+
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence 554443 78999999999998888888999999999999999988777777888899999999999888 567778888
Q ss_pred CCCCeEEcccccccccCCccccC------CCCCcEEEcccCcccc--cCchhcccCCCCcEEEccCC
Q 047676 289 KFLSELNLGFNKLSNSIPVSLSN------LTNLVFLSFYQNSLSG--AIPKEYQNLVKLTKLLLGNN 347 (576)
Q Consensus 289 ~~L~~L~L~~~~~~~~~~~~~~~------l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~ 347 (576)
++|++|++++|.++......|.. .+.++.+++.+|++.. ..|..|..++.++.+++++|
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 99999999999888666555543 3667777777777643 44556666777777777665
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.3e-33 Score=285.66 Aligned_cols=384 Identities=22% Similarity=0.142 Sum_probs=222.7
Q ss_pred CCCCEEEeecccCcccCCcc-ccCCCccceeeccCCcCCC----cCCccccCCCCCcEEEccCccccccCCccc-cCCC-
Q 047676 169 TNLAILYLYNNSLSGSIPSE-IGNLKFLSRTALSHNKLSG----SIPHSLGNLSNLVILFLDNNLLFGLIPSEL-RNLK- 241 (576)
Q Consensus 169 ~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~- 241 (576)
++|++|+++++.++...... +..+++|+.|++++|.+.+ .++..+..+++|++|++++|.+....+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45666666666655332222 4445556666666555542 123334444555555555555443222221 1222
Q ss_pred ---CCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCcc-----ccCCC
Q 047676 242 ---SLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVS-----LSNLT 313 (576)
Q Consensus 242 ---~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-----~~~l~ 313 (576)
+|++|++++|.+..... ..++..+..+++|++|++++|.+.+..... ....+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CCCceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 35555555554432110 122334444455555555555443221111 11234
Q ss_pred CCcEEEcccCcccccC----chhcccCCCCcEEEccCCcccccCCC-C-----CCCCCCcEEEccCccceee----cCcc
Q 047676 314 NLVFLSFYQNSLSGAI----PKEYQNLVKLTKLLLGNNQFQGPIPN-L-----RNLTSLVRVRLNRNYLTGN----ISES 379 (576)
Q Consensus 314 ~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~-~-----~~~~~L~~L~l~~~~~~~~----~~~~ 379 (576)
+|++|++++|.+.... +..+..+++|++|++++|.+...... + ...++|+.|++++|.++.. +...
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 5555555555554322 33444556666666666655332111 1 1244667777777766542 2344
Q ss_pred ccCCCCCcEEEccCCcccccc-----CcccCCCCCCCEEEccCCccccc----CCccccCCCCCCEEeCCCCcccccCcc
Q 047676 380 FYIYPNLTFIDLSHNNFYGEI-----SSDWGRCPKLDSLDFSTNNITGN----IPSEIGYSSQLEVLDLSSNHIVGEIPT 450 (576)
Q Consensus 380 ~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~ 450 (576)
+..+++|++|++++|.+.+.. ...+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 556788888888888776432 22234578888888888887753 455666788888888888887654433
Q ss_pred cccC-----ccCCceeeccccccccc----CCcccccCCCCCEeeCCCCcCccccchhccC-----CCCCCEeeCCCCcC
Q 047676 451 ELGK-----LSFFIKLILAQNQLSGQ----LSPKLGLLVQLEHLDLSSNRLSNSIPESLGN-----LVKLHYLNLSNNHF 516 (576)
Q Consensus 451 ~l~~-----l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~ 516 (576)
.+.. .++|++|++++|.+... .+..+..+++|++|++++|.+++..+..+.. .++|++|++++|++
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 3332 26888888888887754 2344567789999999999887654433332 67899999999988
Q ss_pred CC----CccccccCCCCCCEEeCCCCcCcccCCccCc-----CCCCCceEeCcCCccccccCccc
Q 047676 517 SR----EIPIKLEELIHLSELDLSYNFLGREIPSQIC-----IMQSLEKLNLSHNSLSGVIPRCF 572 (576)
Q Consensus 517 ~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~l~~~~p~~~ 572 (576)
+. .++..+..+++|++|++++|++.+.....+. ...+|+.|.+.++.+....++.+
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l 447 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 447 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHH
Confidence 75 5666777888999999999988654222221 23468888888887765555543
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=8.4e-33 Score=282.65 Aligned_cols=381 Identities=20% Similarity=0.150 Sum_probs=246.8
Q ss_pred CCCCEEEccccccCcccCc-ccCCCCCCCEEEeecccCccc----CCccccCCCccceeeccCCcCCCcCCccc-cCCC-
Q 047676 145 SSLNNLTLYANCLEGLIPH-SLGNLTNLAILYLYNNSLSGS----IPSEIGNLKFLSRTALSHNKLSGSIPHSL-GNLS- 217 (576)
Q Consensus 145 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~- 217 (576)
++|++|+++++.+...... .+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5689999999988765433 378899999999999998743 35567778999999999998875433333 2344
Q ss_pred ---CCcEEEccCcccccc----CCccccCCCCCCEEEccCCCCcccCCccc-----CCCCCccEEEccCCcccccc----
Q 047676 218 ---NLVILFLDNNLLFGL----IPSELRNLKSLYFLELGNNKLSGPIPHFF-----GNLTNLGVLYIYNNLLSGSI---- 281 (576)
Q Consensus 218 ---~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~---- 281 (576)
+|++|++++|.++.. .+..+..+++|++|++++|.+.+.....+ ...++|++|++++|.++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 699999999998853 36678899999999999999864333322 23457888898888877533
Q ss_pred cccccCCCCCCeEEcccccccccCCcccc-----CCCCCcEEEcccCccccc----CchhcccCCCCcEEEccCCccccc
Q 047676 282 PCEIGNLKFLSELNLGFNKLSNSIPVSLS-----NLTNLVFLSFYQNSLSGA----IPKEYQNLVKLTKLLLGNNQFQGP 352 (576)
Q Consensus 282 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~ 352 (576)
+..+..+++|++|++++|.+.+.....+. ..++|++|++++|.+... .+..+..+++|++|++++|.+...
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 33455567888888888776643333322 245677777777766543 244455566666666666654321
Q ss_pred CCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccc----cCcccCCCCCCCEEEccCCcccccCCccc
Q 047676 353 IPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGE----ISSDWGRCPKLDSLDFSTNNITGNIPSEI 428 (576)
Q Consensus 353 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 428 (576)
.. .......+..+++|+.|++++|.++.. .+..+..+++|++|++++|.+.+..+..+
T Consensus 243 ~~------------------~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 243 GM------------------AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp HH------------------HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred HH------------------HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence 00 000011122355666666666655532 23344556667777777666653322222
Q ss_pred -----cCCCCCCEEeCCCCccccc----CcccccCccCCceeecccccccccCCccccc-----CCCCCEeeCCCCcCcc
Q 047676 429 -----GYSSQLEVLDLSSNHIVGE----IPTELGKLSFFIKLILAQNQLSGQLSPKLGL-----LVQLEHLDLSSNRLSN 494 (576)
Q Consensus 429 -----~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~ls~~~~~~ 494 (576)
...++|++|++++|.+.+. .+..+..+++|++|++++|.+.+.....+.. .++|++|++++|.+++
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 1235777777777776544 2344556677777777777766543332221 5688888888888875
Q ss_pred ----ccchhccCCCCCCEeeCCCCcCCCCcccccc-----CCCCCCEEeCCCCcCccc
Q 047676 495 ----SIPESLGNLVKLHYLNLSNNHFSREIPIKLE-----ELIHLSELDLSYNFLGRE 543 (576)
Q Consensus 495 ----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~ 543 (576)
.++..+..+++|++|++++|++++.....+. ...+|+.|++.++.+...
T Consensus 385 ~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 385 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp HHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred hhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 5666777788888888888888654332222 235788888888776543
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2.3e-29 Score=242.07 Aligned_cols=251 Identities=28% Similarity=0.427 Sum_probs=207.3
Q ss_pred CCCcEEEcccCcccc--cCchhcccCCCCcEEEccC-CcccccCCC-CCCCCCCcEEEccCccceeecCccccCCCCCcE
Q 047676 313 TNLVFLSFYQNSLSG--AIPKEYQNLVKLTKLLLGN-NQFQGPIPN-LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTF 388 (576)
Q Consensus 313 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 388 (576)
..+++|+++++.+.+ ..|..+..+++|++|++++ +.+....|. +..+++|+.|++++|.++...+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 355666666666655 5566666667777777763 555544443 666777777777777777777778888888999
Q ss_pred EEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCC-CCCEEeCCCCcccccCcccccCccCCceeeccccc
Q 047676 389 IDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSS-QLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQ 467 (576)
Q Consensus 389 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 467 (576)
|++++|.+....+..+..+++|++|++++|++.+.+|..+..++ +|++|++++|.+.+..|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99998888877777888899999999999999888888888887 899999999998888888888887 9999999999
Q ss_pred ccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCcc
Q 047676 468 LSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQ 547 (576)
Q Consensus 468 ~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 547 (576)
+....+..+..+++|+.|++++|.+++..+. +..+++|++|++++|++++..|..+..+++|++|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9888888889999999999999999865555 788899999999999998889999999999999999999999888886
Q ss_pred CcCCCCCceEeCcCCc-ccc
Q 047676 548 ICIMQSLEKLNLSHNS-LSG 566 (576)
Q Consensus 548 l~~~~~L~~L~l~~~~-l~~ 566 (576)
..+++|+.+++++|+ +.+
T Consensus 288 -~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp -TTGGGSCGGGTCSSSEEES
T ss_pred -ccccccChHHhcCCCCccC
Confidence 788999999999998 554
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.3e-30 Score=275.21 Aligned_cols=435 Identities=12% Similarity=0.017 Sum_probs=236.0
Q ss_pred CCccccCCCCCCEEeCCCCcCC---CCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccc
Q 047676 113 IPPQIGHLSYLKTLNLSKNKLS---GSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEI 189 (576)
Q Consensus 113 ~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 189 (576)
.+..+.++++|++|++++|... +..|..++.. ...........+++|++|+++++.+++..+..+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~------------~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l 132 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGY------------VTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCB------------CHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred hHHHHHhCCCCeEEEecCCcchhhccccccccccc------------chHHHHHHHhhCCCCCeEEeeccEecHHHHHHH
Confidence 3444567888888888876532 1222222100 000001111234445555555444433322323
Q ss_pred cC-CCc-cceeeccCCcC-CC-cCCccccCCCCCcEEEccCccccccCCc----cccCCCCCCEEEccCCCCcc----cC
Q 047676 190 GN-LKF-LSRTALSHNKL-SG-SIPHSLGNLSNLVILFLDNNLLFGLIPS----ELRNLKSLYFLELGNNKLSG----PI 257 (576)
Q Consensus 190 ~~-l~~-L~~L~l~~~~~-~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~----~~ 257 (576)
.. ++. |+.|++++|.. .. .++.....+++|++|++++|.+.+.... .+..+++|+.|+++++.+.. ..
T Consensus 133 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l 212 (592)
T 3ogk_B 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212 (592)
T ss_dssp HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH
T ss_pred HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH
Confidence 22 222 55555544431 10 1111123455666666666654433222 22345666666666665541 11
Q ss_pred CcccCCCCCccEEEccCCcccccccccccCCCCCCeEEccccccc---ccCCccccCCCCCcEEEcccCcccccCchhcc
Q 047676 258 PHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLS---NSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQ 334 (576)
Q Consensus 258 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 334 (576)
+..+..+++|+.|++++|.+.+ .+..+..+++|++++++..... ......+..+++|+.+.+.++.. ...+..+.
T Consensus 213 ~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~ 290 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFP 290 (592)
T ss_dssp HHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGG
T ss_pred HHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHh
Confidence 2223455666666666666553 4455566666666666542211 12223455666777777766432 24455566
Q ss_pred cCCCCcEEEccCCcccccCC--CCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccC-----------Ccccccc-
Q 047676 335 NLVKLTKLLLGNNQFQGPIP--NLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSH-----------NNFYGEI- 400 (576)
Q Consensus 335 ~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~~- 400 (576)
.+++|++|++++|.+..... .+..+++|+.|++.++.........+..+++|++|++++ +.++...
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~ 370 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370 (592)
T ss_dssp GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence 67777777777776432221 145677777777773222222223335577888888873 3333221
Q ss_pred CcccCCCCCCCEEEccCCcccccCCccccC-CCCCCEEeCC----CCccccc-----CcccccCccCCceeeccccc--c
Q 047676 401 SSDWGRCPKLDSLDFSTNNITGNIPSEIGY-SSQLEVLDLS----SNHIVGE-----IPTELGKLSFFIKLILAQNQ--L 468 (576)
Q Consensus 401 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~l~~l~~L~~L~l~~~~--~ 468 (576)
......|++|++|++..+.+++..+..+.. +++|+.|+++ .+.+++. .+..+.++++|++|+++.|. +
T Consensus 371 ~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450 (592)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence 122345788888888777776554444443 7788888885 3344432 22335667888888887654 4
Q ss_pred cccCCccc-ccCCCCCEeeCCCCcCccc-cchhccCCCCCCEeeCCCCcCCCCc-cccccCCCCCCEEeCCCCcCcccCC
Q 047676 469 SGQLSPKL-GLLVQLEHLDLSSNRLSNS-IPESLGNLVKLHYLNLSNNHFSREI-PIKLEELIHLSELDLSYNFLGREIP 545 (576)
Q Consensus 469 ~~~~~~~~-~~~~~L~~L~ls~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~ 545 (576)
.+.....+ ..+++|++|++++|.+++. .+..+.++++|++|++++|++++.. +..+..+++|++|++++|++++...
T Consensus 451 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp CHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred cHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHH
Confidence 43322223 3477888888888887753 3445577888888888888875442 2334567888888888888766544
Q ss_pred ccCc-CCCCCceEeCcC
Q 047676 546 SQIC-IMQSLEKLNLSH 561 (576)
Q Consensus 546 ~~l~-~~~~L~~L~l~~ 561 (576)
..+. .++.+....+..
T Consensus 531 ~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 531 DLMQMARPYWNIELIPS 547 (592)
T ss_dssp TGGGGCCTTEEEEEECC
T ss_pred HHHHHhCCCcEEEEecC
Confidence 4333 356666555544
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.8e-27 Score=227.55 Aligned_cols=252 Identities=24% Similarity=0.229 Sum_probs=191.7
Q ss_pred CCCccceeeeCCCCCEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCC--
Q 047676 35 GPCAWVGIHCNHGGRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGA-- 112 (576)
Q Consensus 35 ~~~~~~~~~c~~~~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-- 112 (576)
..|.|.++.|... +++ .+|. . -.+++++|++++|.+....+..|.++++|++|++++|.+...
T Consensus 5 C~C~~~~l~c~~~-----------~l~-~ip~-~--~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 69 (306)
T 2z66_A 5 CSCSGTEIRCNSK-----------GLT-SVPT-G--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69 (306)
T ss_dssp CEEETTEEECCSS-----------CCS-SCCS-C--CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE
T ss_pred CeeCCCEEEcCCC-----------Ccc-cCCC-C--CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC
Confidence 4478888877653 222 2232 1 225788999999988755555678899999999999887632
Q ss_pred CCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccC-cccCCCCCCCEEEeecccCcccCCccccC
Q 047676 113 IPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIP-HSLGNLTNLAILYLYNNSLSGSIPSEIGN 191 (576)
Q Consensus 113 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 191 (576)
.+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..
T Consensus 70 ~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 148 (306)
T 2z66_A 70 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148 (306)
T ss_dssp EEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT
T ss_pred cccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc
Confidence 2566677889999999999887 567778888899999999888877654 57888888888888888888777777888
Q ss_pred CCccceeeccCCcCCC-cCCccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEE
Q 047676 192 LKFLSRTALSHNKLSG-SIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVL 270 (576)
Q Consensus 192 l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 270 (576)
+++|+.|++++|.+.+ ..|..+..+++|++|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|++|
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 8888888888887765 466777788888888888888877777777788888888888888776666667777778888
Q ss_pred EccCCcccccccccccCCC-CCCeEEccccccc
Q 047676 271 YIYNNLLSGSIPCEIGNLK-FLSELNLGFNKLS 302 (576)
Q Consensus 271 ~l~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~ 302 (576)
++++|.+.+..+..+..++ +|+.|++++|.+.
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 8888877776666666664 7777777777665
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=232.93 Aligned_cols=283 Identities=22% Similarity=0.191 Sum_probs=212.4
Q ss_pred CCCCCCccceeeeCCCCCEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCC
Q 047676 32 TKIGPCAWVGIHCNHGGRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFG 111 (576)
Q Consensus 32 ~~~~~~~~~~~~c~~~~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 111 (576)
.....|.|.++ | ++++++++ .+|. .+ .++|++|++++|.+.+..+++|.++++|++|++++|.+.+
T Consensus 25 ~~~~~C~~~~~-c---------~~~~~~l~-~iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (353)
T 2z80_A 25 QASLSCDRNGI-C---------KGSSGSLN-SIPS-GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT 90 (353)
T ss_dssp --CCEECTTSE-E---------ECCSTTCS-SCCT-TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred ccCCCCCCCeE-e---------eCCCCCcc-cccc-cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc
Confidence 34556888776 5 34455554 3444 22 2589999999999987766789999999999999999987
Q ss_pred CCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccC-cccCCCCCCCEEEeecc-cCcccCCccc
Q 047676 112 AIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIP-HSLGNLTNLAILYLYNN-SLSGSIPSEI 189 (576)
Q Consensus 112 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~-~~~~~~~~~~ 189 (576)
..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+..+.. ..+.++++|++|++++| .+....+..+
T Consensus 91 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 170 (353)
T 2z80_A 91 IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170 (353)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc
Confidence 778889999999999999999985545558999999999999999887765 57889999999999998 4666667788
Q ss_pred cCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccC---CCCC
Q 047676 190 GNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFG---NLTN 266 (576)
Q Consensus 190 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~---~~~~ 266 (576)
..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.......+. ....
T Consensus 171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~ 250 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250 (353)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccch
Confidence 8899999999999988877788888899999999999887655544556688899999999888754433332 3456
Q ss_pred ccEEEccCCcccc----cccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCccccc
Q 047676 267 LGVLYIYNNLLSG----SIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGA 328 (576)
Q Consensus 267 L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 328 (576)
++.++++++.+.+ .+|..+..+++|+.|++++|.++......+..+++|++|++++|++.+.
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 6777777766543 2344556677777777777777644333356667777777777766543
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=3.8e-30 Score=271.57 Aligned_cols=376 Identities=14% Similarity=0.047 Sum_probs=273.4
Q ss_pred CCCccceeeccCCcCCCcCCccccC-CCC-CcEEEccCccc-ccc-CCccccCCCCCCEEEccCCCCcccCC----cccC
Q 047676 191 NLKFLSRTALSHNKLSGSIPHSLGN-LSN-LVILFLDNNLL-FGL-IPSELRNLKSLYFLELGNNKLSGPIP----HFFG 262 (576)
Q Consensus 191 ~l~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~~-~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~ 262 (576)
.+++|+.|+++++.+++..+..+.. ++. |++|++++|.. ... .+.....+++|++|++++|.+.+... ..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 6889999999999887655555555 344 99999998862 211 11223478999999999998765432 2345
Q ss_pred CCCCccEEEccCCccc----ccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCccc---ccCchhccc
Q 047676 263 NLTNLGVLYIYNNLLS----GSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLS---GAIPKEYQN 335 (576)
Q Consensus 263 ~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~ 335 (576)
.+++|++|+++++.++ ..++..+..+++|+.|+++++.+.. .+..+..+++|+++.+...... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 6789999999999886 2334445678999999999998874 4466788999999999864332 233456677
Q ss_pred CCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecC-ccccCCCCCcEEEccCCccccccCcccCCCCCCCEEE
Q 047676 336 LVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNIS-ESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLD 414 (576)
Q Consensus 336 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 414 (576)
+++|+.+.++++........+..+++|+.|++++|.++.... ..+..+++|+.|+++++.........+..|++|++|+
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 899999999886544333346678999999999998654332 3467899999999994322222333446789999999
Q ss_pred ccC----------C-ccccc-CCccccCCCCCCEEeCCCCcccccCcccccC-ccCCceeeccc----cccccc-----C
Q 047676 415 FST----------N-NITGN-IPSEIGYSSQLEVLDLSSNHIVGEIPTELGK-LSFFIKLILAQ----NQLSGQ-----L 472 (576)
Q Consensus 415 l~~----------~-~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~----~~~~~~-----~ 472 (576)
+++ | .+++. +......+++|++|+++.+.+++..+..+.. +++|+.|++.+ +.+++. .
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~ 428 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence 994 3 44432 2233456899999999888887666666654 89999999974 344432 2
Q ss_pred CcccccCCCCCEeeCCCCc--Cccccchhc-cCCCCCCEeeCCCCcCCCCc-cccccCCCCCCEEeCCCCcCccc-CCcc
Q 047676 473 SPKLGLLVQLEHLDLSSNR--LSNSIPESL-GNLVKLHYLNLSNNHFSREI-PIKLEELIHLSELDLSYNFLGRE-IPSQ 547 (576)
Q Consensus 473 ~~~~~~~~~L~~L~ls~~~--~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~~~ 547 (576)
...+.++++|++|++++|. +++.....+ ..+++|++|++++|++++.. +..+.++++|++|++++|++++. ++..
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 508 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH
Confidence 2235679999999998665 555444333 45899999999999997633 34557889999999999998654 3334
Q ss_pred CcCCCCCceEeCcCCccccc
Q 047676 548 ICIMQSLEKLNLSHNSLSGV 567 (576)
Q Consensus 548 l~~~~~L~~L~l~~~~l~~~ 567 (576)
+..+++|++|++++|++++.
T Consensus 509 ~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHCSSCCEEEEESCBCCTT
T ss_pred HHhcCccCeeECcCCcCCHH
Confidence 45689999999999998865
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.5e-25 Score=226.71 Aligned_cols=247 Identities=23% Similarity=0.179 Sum_probs=190.7
Q ss_pred EEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCC
Q 047676 50 VNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLS 129 (576)
Q Consensus 50 i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 129 (576)
...+++++.++. .+|. .+ .++++.|++++|.+.+..+.+|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPD-GI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCS-CC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCC-CC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 345666666655 3444 22 2689999999999988888889999999999999999987777889999999999999
Q ss_pred CCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeeccc-CcccCCccccCCCccceeeccCCcCCCc
Q 047676 130 KNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNS-LSGSIPSEIGNLKFLSRTALSHNKLSGS 208 (576)
Q Consensus 130 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 208 (576)
+|.++...+..+..+++|++|++++|.+..+.+..|.++++|++|+++++. +....+..|..+++|+.|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 999986666678999999999999999988888889999999999998854 44444456778888888888888777 3
Q ss_pred CCccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCC
Q 047676 209 IPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNL 288 (576)
Q Consensus 209 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 288 (576)
+| .+..+++|+.|++++|.++...+..|..+++|+.|++++|++....+..|..+++|+.|++++|.++...+..+..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 44 36677777777777777777777777777777777777777776666667777777777777777766555556666
Q ss_pred CCCCeEEccccccc
Q 047676 289 KFLSELNLGFNKLS 302 (576)
Q Consensus 289 ~~L~~L~L~~~~~~ 302 (576)
++|+.|++++|.+.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 77777777766554
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.1e-25 Score=216.40 Aligned_cols=278 Identities=22% Similarity=0.188 Sum_probs=170.4
Q ss_pred CeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCccccc---CCCCCCCCCCcEEEcc
Q 047676 292 SELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGP---IPNLRNLTSLVRVRLN 368 (576)
Q Consensus 292 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~ 368 (576)
+.++++++.++.. +..+ .+++++|++++|.+....+..+..+++|++|++++|.+... ...+..+++|+.|+++
T Consensus 10 ~~l~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccC-CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 4566666666532 2222 25777778877777755555567777777777777766532 1223456677777777
Q ss_pred CccceeecCccccCCCCCcEEEccCCccccccC-cccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccc-
Q 047676 369 RNYLTGNISESFYIYPNLTFIDLSHNNFYGEIS-SDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVG- 446 (576)
Q Consensus 369 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~- 446 (576)
+|.+... +..+..+++|+.|++++|.+..... ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 87 ~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 7766643 3346667777777777776664433 456666777777777776665566666666777777777776654
Q ss_pred cCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccC
Q 047676 447 EIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEE 526 (576)
Q Consensus 447 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 526 (576)
..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 34556666667777777777666655556666667777777777666555555666666777777777666666666666
Q ss_pred CC-CCCEEeCCCCcCcccCC--ccCcCCCCCceEeCcCCccccccCcccc
Q 047676 527 LI-HLSELDLSYNFLGREIP--SQICIMQSLEKLNLSHNSLSGVIPRCFE 573 (576)
Q Consensus 527 l~-~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~l~~~~p~~~~ 573 (576)
++ +|++|++++|++...-+ ....-+...+.+.+..+.+....|+.++
T Consensus 246 ~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp CCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred hhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 53 66777777766644211 1111122333444555555555565544
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.8e-25 Score=226.96 Aligned_cols=246 Identities=24% Similarity=0.197 Sum_probs=187.2
Q ss_pred EEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCC
Q 047676 51 NSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSK 130 (576)
Q Consensus 51 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 130 (576)
..+++++.++.. +|. .+ .+++++|++++|.+.+..+.+|.++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 57 ~~v~c~~~~l~~-iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRRGLSE-VPQ-GI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSSCCSS-CCS-CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCCCcCc-cCC-CC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 455666665553 443 22 26899999999999888888899999999999999999877788899999999999999
Q ss_pred CcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeeccc-CcccCCccccCCCccceeeccCCcCCCcC
Q 047676 131 NKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNS-LSGSIPSEIGNLKFLSRTALSHNKLSGSI 209 (576)
Q Consensus 131 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 209 (576)
|.++...+..+..+++|++|++++|.+..+.+..|.++++|++|+++++. +....+..+..+++|+.|++++|.+.+ +
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence 99986666678889999999999999888878888999999999998844 444444567778888888888887763 3
Q ss_pred CccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCC
Q 047676 210 PHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLK 289 (576)
Q Consensus 210 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 289 (576)
| .+..+++|+.|++++|.++...+..|..+++|+.|++++|.+....+..|..+++|+.|++++|.++...+..+..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 3 366677777777777777777777777777777777777777666666667777777777777776655555566666
Q ss_pred CCCeEEccccccc
Q 047676 290 FLSELNLGFNKLS 302 (576)
Q Consensus 290 ~L~~L~L~~~~~~ 302 (576)
+|+.|++++|.+.
T Consensus 291 ~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEccCCCcC
Confidence 6677766666554
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=2e-26 Score=226.21 Aligned_cols=279 Identities=18% Similarity=0.181 Sum_probs=137.5
Q ss_pred CCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEc
Q 047676 265 TNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLL 344 (576)
Q Consensus 265 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 344 (576)
+.....+++++.++ .+|..+. ++|++|++++|.++......+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 31 ~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp CTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 33444566666655 3343332 46677777777666555555666666666666666666555555666666666666
Q ss_pred cCCcccccCCC-CCCCCCCcEEEccCccceeecC-ccccCCCCCcEEEccCCc-cccccCcccCCCCCCCEEEccCCccc
Q 047676 345 GNNQFQGPIPN-LRNLTSLVRVRLNRNYLTGNIS-ESFYIYPNLTFIDLSHNN-FYGEISSDWGRCPKLDSLDFSTNNIT 421 (576)
Q Consensus 345 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~ 421 (576)
++|.+....+. +..+++|+.|++++|.+..... ..+..+++|+.|++++|. +....+..+..+++|++|++++|++.
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 66655543333 4455555555555555554333 344455555555555542 33333344455555555555555555
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhcc
Q 047676 422 GNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLG 501 (576)
Q Consensus 422 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~ 501 (576)
+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+.....+. ...
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~---------------------~~~ 246 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS---------------------TGE 246 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------
T ss_pred ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc---------------------ccc
Confidence 44444455555555555555544322222233344555555555544432211111 011
Q ss_pred CCCCCCEeeCCCCcCCC----CccccccCCCCCCEEeCCCCcCcccCCcc-CcCCCCCceEeCcCCcccccc
Q 047676 502 NLVKLHYLNLSNNHFSR----EIPIKLEELIHLSELDLSYNFLGREIPSQ-ICIMQSLEKLNLSHNSLSGVI 568 (576)
Q Consensus 502 ~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~ 568 (576)
..+.++.++++++.+.+ .+|..+..+++|++|++++|.+.. +|.. +..+++|++|++++|++++..
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 23344444444444432 123334445555555555555542 2322 344555555555555554433
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=6.2e-26 Score=215.64 Aligned_cols=224 Identities=24% Similarity=0.226 Sum_probs=172.8
Q ss_pred EEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCC
Q 047676 51 NSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSK 130 (576)
Q Consensus 51 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 130 (576)
+.+++++.++.. +|. .-.+++++|++++|.+.+..++.|..+++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 14 ~~~~c~~~~l~~-ip~---~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS-CCT---TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc-CCc---CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 566677666653 332 2346899999999998877777889999999999999988877788899999999999999
Q ss_pred Cc-CCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcC
Q 047676 131 NK-LSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSI 209 (576)
Q Consensus 131 ~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 209 (576)
|. +....|..+..+++|++|++++|.+....+..+.++++|++|++++|.++...+..+..+++|+.|++++|.+++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 97 77555778888999999999999888887888888888999988888887666666777778888888877777555
Q ss_pred CccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCccc
Q 047676 210 PHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLS 278 (576)
Q Consensus 210 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 278 (576)
+..+..+++|+.|++++|.+....+.++..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 555677777777777777777766667777777777777777776555555666677777777776654
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=9.7e-26 Score=217.99 Aligned_cols=235 Identities=23% Similarity=0.290 Sum_probs=186.2
Q ss_pred CCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEE
Q 047676 72 FPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLT 151 (576)
Q Consensus 72 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 151 (576)
.++++.|+++++.+. .+|..+.++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 456777777777765 55666666777777777777766 66666777777777777777666 5666666666666666
Q ss_pred ccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCccccc
Q 047676 152 LYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFG 231 (576)
Q Consensus 152 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 231 (576)
+++|......|..+.. . .....+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+..
T Consensus 157 L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 6666554444433221 0 12233566999999999999998 788889999999999999999986
Q ss_pred cCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccC
Q 047676 232 LIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSN 311 (576)
Q Consensus 232 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 311 (576)
. +..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+....+..+..
T Consensus 221 l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 221 L-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp C-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred C-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 4 456999999999999999998888889999999999999999998899999999999999999999998899999999
Q ss_pred CCCCcEEEcccCccc
Q 047676 312 LTNLVFLSFYQNSLS 326 (576)
Q Consensus 312 l~~L~~L~l~~~~~~ 326 (576)
+++++.+.+..+.+.
T Consensus 300 L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 300 LPANCIILVPPHLQA 314 (328)
T ss_dssp SCTTCEEECCGGGSC
T ss_pred ccCceEEeCCHHHHH
Confidence 999999998765543
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=6e-25 Score=223.10 Aligned_cols=245 Identities=24% Similarity=0.229 Sum_probs=125.2
Q ss_pred CeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCcc
Q 047676 292 SELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNY 371 (576)
Q Consensus 292 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 371 (576)
..++.++..++. .+..+ .+++++|++++|.+....+..|..+++|+.|++++|.+.
T Consensus 57 ~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--------------------- 112 (452)
T 3zyi_A 57 SKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR--------------------- 112 (452)
T ss_dssp CEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC---------------------
T ss_pred cEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC---------------------
Confidence 445555554442 22222 145555666555555555555555555555555555544
Q ss_pred ceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCc-ccccCcc
Q 047676 372 LTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNH-IVGEIPT 450 (576)
Q Consensus 372 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~ 450 (576)
......|..+++|+.|++++|.+.......|..+++|++|++++|++....+..+..+++|+.|++++|. +....+.
T Consensus 113 --~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 190 (452)
T 3zyi_A 113 --QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190 (452)
T ss_dssp --EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred --CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh
Confidence 4444444444444444444444443333344445555555555555443333344445555555555432 2222222
Q ss_pred cccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCC
Q 047676 451 ELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHL 530 (576)
Q Consensus 451 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 530 (576)
.+.++++|++|++++|.+... ..+..+++|++|++++|.+++..+..|.++++|+.|++++|+++...+..|..+++|
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 344555555555555555432 234455556666666666555555555556666666666666655555555556666
Q ss_pred CEEeCCCCcCcccCCccCcCCCCCceEeCcCCcc
Q 047676 531 SELDLSYNFLGREIPSQICIMQSLEKLNLSHNSL 564 (576)
Q Consensus 531 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 564 (576)
++|++++|.+++..+..+..+++|++|++++|++
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 6666666665544444555556666666666654
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=5.3e-25 Score=222.67 Aligned_cols=225 Identities=26% Similarity=0.237 Sum_probs=116.9
Q ss_pred CCcEEEccCCcccccCCC-CCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEcc
Q 047676 338 KLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFS 416 (576)
Q Consensus 338 ~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 416 (576)
.++.|++++|.+....+. +..+++|+.|++++|.+.......|..+++|+.|++++|.++......|..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 344444444444333221 3444444444444444444444445555555555555555544444445555555555555
Q ss_pred CCcccccCCccccCCCCCCEEeCCCCc-ccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccc
Q 047676 417 TNNITGNIPSEIGYSSQLEVLDLSSNH-IVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNS 495 (576)
Q Consensus 417 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~ 495 (576)
+|++....+..+..+++|+.|++++|. +....+..|.++++|++|++++|.+... ..+..+++|++|++++|.+++.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--CCCTTCSSCCEEECTTSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--cccCCCcccCEEECCCCccCcc
Confidence 555554444445555555555555532 2222223455555555555555555432 1345555666666666666555
Q ss_pred cchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCcc
Q 047676 496 IPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSL 564 (576)
Q Consensus 496 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 564 (576)
.+..|.++++|+.|++++|+++...+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 555556666666666666666555555555666666666666666554444555566666666666654
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.3e-25 Score=209.79 Aligned_cols=254 Identities=21% Similarity=0.191 Sum_probs=184.9
Q ss_pred cEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCC-CCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCC
Q 047676 316 VFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHN 394 (576)
Q Consensus 316 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 394 (576)
++++.++..+.. .|.. ..+++++|+++++.+....+. +..+++|+.|++++|.++...+..+..+++|+.|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 456666666553 3332 246788888888887766544 777888888888888888777777888888888888888
Q ss_pred c-cccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCC
Q 047676 395 N-FYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLS 473 (576)
Q Consensus 395 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 473 (576)
. +....+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.....
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 665556677788888888888888876667777788888888888888776666667778888888888888776666
Q ss_pred cccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCC
Q 047676 474 PKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQS 553 (576)
Q Consensus 474 ~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 553 (576)
..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++...-+.. .....
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~ 249 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAW 249 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHH
Confidence 66777888888888888887777777778888888888888887666666777888888888888775432211 11123
Q ss_pred CceEeCcCCccccccCcccc
Q 047676 554 LEKLNLSHNSLSGVIPRCFE 573 (576)
Q Consensus 554 L~~L~l~~~~l~~~~p~~~~ 573 (576)
++.+....+.+....|+.++
T Consensus 250 l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 250 LQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp HHHCCSEECCCBEEESGGGT
T ss_pred HHhcccccCccccCCchHhC
Confidence 44555666777777776654
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=2.4e-29 Score=265.71 Aligned_cols=433 Identities=14% Similarity=0.073 Sum_probs=197.9
Q ss_pred cEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCC---CCCcc------------cCCCCCCCEEEccccccCcccCcc
Q 047676 100 KYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSG---SIPLE------------VGRLSSLNNLTLYANCLEGLIPHS 164 (576)
Q Consensus 100 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~------------~~~l~~L~~L~l~~~~~~~~~~~~ 164 (576)
+.+++.++... .....+.++++|++|+++++.... ..|.. ...+++|++|++++|.+.+..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 45666555332 223346678999999999875321 11111 235667777887777766554444
Q ss_pred cC-CCCCCCEEEeecc-cCccc-CCccccCCCccceeeccCCcCCCcCCcccc----CCCCCcEEEccCccccccCCcc-
Q 047676 165 LG-NLTNLAILYLYNN-SLSGS-IPSEIGNLKFLSRTALSHNKLSGSIPHSLG----NLSNLVILFLDNNLLFGLIPSE- 236 (576)
Q Consensus 165 ~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~~~~~~~- 236 (576)
+. .+++|++|++++| .++.. .+..+..+++|++|++++|.+++..+..+. .+++|++|+++++. .......
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l 203 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSAL 203 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHH
Confidence 43 5777777777777 33322 222233567777777777765543333332 45567777776664 1111111
Q ss_pred ---ccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCc-------ccccccccccCCCCCCeE-EcccccccccC
Q 047676 237 ---LRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNL-------LSGSIPCEIGNLKFLSEL-NLGFNKLSNSI 305 (576)
Q Consensus 237 ---l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~l~~L~~L-~L~~~~~~~~~ 305 (576)
+..+++|+.|++++|......+..+..+++|+.|++..+. +.+ .+..+..+++|+.+ .+.+.... ..
T Consensus 204 ~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l 281 (594)
T 2p1m_B 204 ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPA-YL 281 (594)
T ss_dssp HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG-GG
T ss_pred HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchh-hH
Confidence 2335666666666652211233344455666666644332 111 22234555556555 22221111 11
Q ss_pred CccccCCCCCcEEEcccCcccccCc-hhcccCCCCcEEEccCCcccccCCC-CCCCCCCcEEEccC---------cccee
Q 047676 306 PVSLSNLTNLVFLSFYQNSLSGAIP-KEYQNLVKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLNR---------NYLTG 374 (576)
Q Consensus 306 ~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~---------~~~~~ 374 (576)
+..+..+++|++|++++|.+..... ..+..+++|++|++++|......+. ...+++|+.|++.+ +.+++
T Consensus 282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 2222244566666666555432211 2234555666666655511111111 12345555555522 12221
Q ss_pred ecCccc-cCCCCCcEEEccCCccccccCccc-CCCCCCCEEEcc--C----Ccccc-----cCCccccCCCCCCEEeCCC
Q 047676 375 NISESF-YIYPNLTFIDLSHNNFYGEISSDW-GRCPKLDSLDFS--T----NNITG-----NIPSEIGYSSQLEVLDLSS 441 (576)
Q Consensus 375 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~--~----~~~~~-----~~~~~~~~~~~L~~L~l~~ 441 (576)
.....+ ..+++|+.|.+..+.+++.....+ ..+++|++|+++ + +.++. .++..+..+++|+.|++++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 111111 124555555554444443222222 135555555555 2 22221 0111133445555555544
Q ss_pred CcccccCcccccC-ccCCceeecccccccccCCccc-ccCCCCCEeeCCCCcCccccc-hhccCCCCCCEeeCCCCcCCC
Q 047676 442 NHIVGEIPTELGK-LSFFIKLILAQNQLSGQLSPKL-GLLVQLEHLDLSSNRLSNSIP-ESLGNLVKLHYLNLSNNHFSR 518 (576)
Q Consensus 442 ~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~ls~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~ 518 (576)
.+.+.....+.. +++|+.|++++|.+++.....+ ..+++|++|++++|.+++... .....+++|+.|++++|+++.
T Consensus 442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred -cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 333222222322 4555555555555443322222 345555555555555533222 122334555555555555533
Q ss_pred Cccccc-cCCCCCCEEeCCC
Q 047676 519 EIPIKL-EELIHLSELDLSY 537 (576)
Q Consensus 519 ~~~~~~-~~l~~L~~L~l~~ 537 (576)
.....+ ..++.|+...+..
T Consensus 521 ~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 521 GACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp HHHHHHHHHCTTEEEEEECS
T ss_pred HHHHHHHHhCCCCEEEEecC
Confidence 222222 2344444444433
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=2.7e-29 Score=265.33 Aligned_cols=436 Identities=16% Similarity=0.132 Sum_probs=296.4
Q ss_pred CEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCC---CC------------ccccCCCCCCEEeCCCCcCCCCCCcc
Q 047676 76 AYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGA---IP------------PQIGHLSYLKTLNLSKNKLSGSIPLE 140 (576)
Q Consensus 76 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~------------~~~~~l~~L~~L~l~~~~~~~~~~~~ 140 (576)
+.+++..+... .....+.++++|++|+++++..... .| .....+++|++|++++|.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 45666665432 2223567889999999999853211 11 11346889999999999887655555
Q ss_pred cC-CCCCCCEEEcccc-ccCcc-cCcccCCCCCCCEEEeecccCcccCCccc----cCCCccceeeccCCc--CCC-cCC
Q 047676 141 VG-RLSSLNNLTLYAN-CLEGL-IPHSLGNLTNLAILYLYNNSLSGSIPSEI----GNLKFLSRTALSHNK--LSG-SIP 210 (576)
Q Consensus 141 ~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~--~~~-~~~ 210 (576)
+. .+++|++|++++| .+... .+..+.++++|++|++++|.+++..+..+ ..+++|+.|+++++. +.. .++
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 54 6899999999998 44432 34445589999999999998765443333 367799999999886 221 122
Q ss_pred ccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCC-------cccCCcccCCCCCccEE-EccCCccccccc
Q 047676 211 HSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKL-------SGPIPHFFGNLTNLGVL-YIYNNLLSGSIP 282 (576)
Q Consensus 211 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-------~~~~~~~l~~~~~L~~L-~l~~~~~~~~~~ 282 (576)
.....+++|++|++++|......+..+..+++|+.|++..+.. .+ .+..+.++++|+.+ .+.+.... .++
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l~ 282 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPA-YLP 282 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG-GGG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchh-hHH
Confidence 2234579999999999843223556677899999999776532 21 22356778899988 44433322 344
Q ss_pred ccccCCCCCCeEEcccccccccCCc-cccCCCCCcEEEcccCccccc-CchhcccCCCCcEEEccCC---------cccc
Q 047676 283 CEIGNLKFLSELNLGFNKLSNSIPV-SLSNLTNLVFLSFYQNSLSGA-IPKEYQNLVKLTKLLLGNN---------QFQG 351 (576)
Q Consensus 283 ~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~---------~~~~ 351 (576)
..+..+++|++|++++|.++..... .+..+++|++|++.+| +... .+.....+++|++|++.++ .+..
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 4445689999999999986643322 2468899999999988 4322 2333446899999999543 2221
Q ss_pred c-CCC-CCCCCCCcEEEccCccceeecCcccc-CCCCCcEEEcc--C----Cccccc-----cCcccCCCCCCCEEEccC
Q 047676 352 P-IPN-LRNLTSLVRVRLNRNYLTGNISESFY-IYPNLTFIDLS--H----NNFYGE-----ISSDWGRCPKLDSLDFST 417 (576)
Q Consensus 352 ~-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~~-----~~~~~~~~~~L~~L~l~~ 417 (576)
. ... ...+++|+.|.+..+.++......+. .+++|+.|+++ + +.++.. ....+..+++|++|++++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 1 011 22478999998887777765444443 58999999999 3 334311 112356789999999987
Q ss_pred CcccccCCcccc-CCCCCCEEeCCCCcccccCcccc-cCccCCceeecccccccccCCc-ccccCCCCCEeeCCCCcCcc
Q 047676 418 NNITGNIPSEIG-YSSQLEVLDLSSNHIVGEIPTEL-GKLSFFIKLILAQNQLSGQLSP-KLGLLVQLEHLDLSSNRLSN 494 (576)
Q Consensus 418 ~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~ls~~~~~~ 494 (576)
.+++.....+. .+++|+.|++++|.+++.....+ ..+++|+.|++++|.+++.... ....+++|+.|++++|+++.
T Consensus 442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred -cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 55544444444 38999999999999876555444 6789999999999998654332 34568999999999999865
Q ss_pred ccchhc-cCCCCCCEeeCCCCcC
Q 047676 495 SIPESL-GNLVKLHYLNLSNNHF 516 (576)
Q Consensus 495 ~~~~~~-~~l~~L~~L~l~~~~~ 516 (576)
.....+ ..+|.|+...+..+..
T Consensus 521 ~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 521 GACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp HHHHHHHHHCTTEEEEEECSSSC
T ss_pred HHHHHHHHhCCCCEEEEecCCCc
Confidence 433434 5578887777766544
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.1e-24 Score=204.94 Aligned_cols=216 Identities=26% Similarity=0.274 Sum_probs=163.5
Q ss_pred CCCCccceeeeCCCCCEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCC
Q 047676 34 IGPCAWVGIHCNHGGRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAI 113 (576)
Q Consensus 34 ~~~~~~~~~~c~~~~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 113 (576)
.+.|.|.|..|...+..+.+++++++++. +|. .+. +++++|++++|.+.+..+.+|..+++|++|++++|.+....
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~-~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPS-NIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSS-CCS-CCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCc-cCC-CCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 46799999999877778899999988874 444 222 57899999999988776678899999999999999888666
Q ss_pred CccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCC
Q 047676 114 PPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLK 193 (576)
Q Consensus 114 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 193 (576)
+..|.++++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 66678899999999999988866666778888888888888888888777788888888888888877755555566677
Q ss_pred ccceeeccCCcCCCcCCccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCC
Q 047676 194 FLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKL 253 (576)
Q Consensus 194 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 253 (576)
+|+.|++++|.+.+..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|++
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 777777777766654444566666666666666666655555555666666666666654
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.1e-26 Score=222.10 Aligned_cols=258 Identities=22% Similarity=0.221 Sum_probs=140.6
Q ss_pred cEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCC
Q 047676 268 GVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNN 347 (576)
Q Consensus 268 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 347 (576)
+..+++.+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+ +.
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~------------- 77 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE------------- 77 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ET-------------
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hh-------------
Confidence 333444444433333333444555555555555554433444455555555555554443222 44
Q ss_pred cccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCcc
Q 047676 348 QFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSE 427 (576)
Q Consensus 348 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 427 (576)
.+++|+.|++++|.++... ..++|+.|++++|.+..... ..+++|++|++++|++.+..+..
T Consensus 78 ----------~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~ 139 (317)
T 3o53_A 78 ----------SLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLD 139 (317)
T ss_dssp ----------TCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBC
T ss_pred ----------hcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchh
Confidence 4444555555544444322 22555666666555543322 22455666666666666544555
Q ss_pred ccCCCCCCEEeCCCCcccccCcccc-cCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCC
Q 047676 428 IGYSSQLEVLDLSSNHIVGEIPTEL-GKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKL 506 (576)
Q Consensus 428 ~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L 506 (576)
+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+... .....+++|++|++++|.+++. +..+..+++|
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L 216 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGV 216 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTC
T ss_pred hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcc-hhhhcccCcc
Confidence 5566666666666666655444444 3556666666666666544 2223466677777777766643 3336666677
Q ss_pred CEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCc-ccCCccCcCCCCCceEeCcCC
Q 047676 507 HYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLG-REIPSQICIMQSLEKLNLSHN 562 (576)
Q Consensus 507 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~ 562 (576)
+.|++++|+++ .+|..+..+++|++|++++|++. +.+|..+..+++|+.+++.+|
T Consensus 217 ~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 77777777765 34555666667777777777665 455555666666666666644
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.5e-23 Score=216.12 Aligned_cols=266 Identities=24% Similarity=0.246 Sum_probs=138.6
Q ss_pred CCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCCCcEEEc
Q 047676 241 KSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSF 320 (576)
Q Consensus 241 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l 320 (576)
.+++.|+++++.++.. |..+. ++|++|++++|.++. +|. .+++|+.|++++|.++... . .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~~l-p~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp-~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLP-V---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCSCC-CSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCC-C---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcCcc-ChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCC-C---CCCCCCEEEC
Confidence 3578888888887743 33332 678888888887773 443 4577788888877776322 2 5567777777
Q ss_pred ccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCcccccc
Q 047676 321 YQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEI 400 (576)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 400 (576)
++|.+... |. .+++|+.|++++|.+..... .+++|+.|++++|.++... ..+++|+.|++++|.++...
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCC
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCCcCCC---CCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCCCCc
Confidence 77766543 22 34566666666666543222 1255555555555544321 12344555555555444321
Q ss_pred CcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCC
Q 047676 401 SSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLV 480 (576)
Q Consensus 401 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 480 (576)
..+++|+.|++++|.+.+ ++. .+++|+.|++ ++|.+.... ..++
T Consensus 178 ----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L------------------------~~N~l~~l~----~~~~ 221 (622)
T 3g06_A 178 ----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWA------------------------YNNRLTSLP----ALPS 221 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC------------------------CSSCCSSCC----CCCT
T ss_pred ----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEEC------------------------cCCcccccC----CCCC
Confidence 234445555555554442 221 1244444444 444444221 1124
Q ss_pred CCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCc
Q 047676 481 QLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLS 560 (576)
Q Consensus 481 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 560 (576)
+|+.|++++|.+++ +| ..+++|+.|++++|+++. +|. .+++|+.|++++|.+. .+|..+..+++|+.|+++
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 45555555555543 22 233455555555555542 222 3345555555555553 344445555555555555
Q ss_pred CCccccccCcccc
Q 047676 561 HNSLSGVIPRCFE 573 (576)
Q Consensus 561 ~~~l~~~~p~~~~ 573 (576)
+|++++..|..|+
T Consensus 293 ~N~l~~~~~~~l~ 305 (622)
T 3g06_A 293 GNPLSERTLQALR 305 (622)
T ss_dssp SCCCCHHHHHHHH
T ss_pred CCCCCCcCHHHHH
Confidence 5555555554443
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.4e-24 Score=209.41 Aligned_cols=242 Identities=23% Similarity=0.213 Sum_probs=191.0
Q ss_pred EcccCcccccCchhcccCCCCcEEEccCCcccccCCC-CCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccc
Q 047676 319 SFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFY 397 (576)
Q Consensus 319 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 397 (576)
+++.+.+.......+..+++|++|++++|.+....+. +..+++|+.|++++|.++...+ +..+++|+.|++++|.+.
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence 3344444333334445566777777777776655432 6677777888888877776543 889999999999999987
Q ss_pred cccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCccc-
Q 047676 398 GEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKL- 476 (576)
Q Consensus 398 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~- 476 (576)
+.. .+++|++|++++|++.+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+
T Consensus 94 ~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 94 ELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp EEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred ccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 543 348999999999999865433 36789999999999998778789999999999999999987665555
Q ss_pred ccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCce
Q 047676 477 GLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEK 556 (576)
Q Consensus 477 ~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 556 (576)
..+++|++|++++|.+++. +. ...+++|++|++++|++++. +..+..+++|++|++++|.+.+ +|..+..+++|+.
T Consensus 166 ~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~ 241 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEH 241 (317)
T ss_dssp GGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCE
T ss_pred hccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCE
Confidence 4789999999999999865 32 33589999999999999754 4458899999999999999964 6778889999999
Q ss_pred EeCcCCccc-cccCccccc
Q 047676 557 LNLSHNSLS-GVIPRCFEE 574 (576)
Q Consensus 557 L~l~~~~l~-~~~p~~~~~ 574 (576)
|++++|+++ +.+|+.+..
T Consensus 242 L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp EECTTCCCBHHHHHHHHHT
T ss_pred EEccCCCccCcCHHHHHhc
Confidence 999999998 666665544
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=5.7e-23 Score=194.15 Aligned_cols=207 Identities=27% Similarity=0.254 Sum_probs=100.4
Q ss_pred CCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCC
Q 047676 361 SLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLS 440 (576)
Q Consensus 361 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 440 (576)
+++.|++++|.++......+..+++|+.|++++|.+.......+..+++|++|++++|++.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444444444444445555555555554444333444445555555555555544444444455555555555
Q ss_pred CCcccccCcccccCccCCceeeccccccccc-CCcccccCCCCCEeeCCCCcCccccchhccCCCCCC----EeeCCCCc
Q 047676 441 SNHIVGEIPTELGKLSFFIKLILAQNQLSGQ-LSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLH----YLNLSNNH 515 (576)
Q Consensus 441 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~----~L~l~~~~ 515 (576)
+|.+.+..+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+++..+..+..+++|+ +|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 5554444333444555555555555554432 244455555555555555555544444444433444 55555555
Q ss_pred CCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCcccccc
Q 047676 516 FSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVI 568 (576)
Q Consensus 516 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 568 (576)
+....+..+.. .+|++|++++|.+.+..+..+..+++|++|++++|++++..
T Consensus 189 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 189 MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 54333333322 25555555555554443334455555555555555555433
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.4e-25 Score=215.82 Aligned_cols=249 Identities=25% Similarity=0.281 Sum_probs=155.5
Q ss_pred cCCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccc-cCchhcc-------cCCCCcEEEccCCcccccCCCCC
Q 047676 286 GNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSG-AIPKEYQ-------NLVKLTKLLLGNNQFQGPIPNLR 357 (576)
Q Consensus 286 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~ 357 (576)
+..++|+.++++++.+ ..+..+... ++.|+++++.+.. ..+..+. .+++|++|++++|.+.
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------- 108 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT------- 108 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB-------
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc-------
Confidence 3445566666666665 233322221 5555665555532 2222222 3455555555555544
Q ss_pred CCCCCcEEEccCccceeecCccc--cCCCCCcEEEccCCccccccCcccCCC-----CCCCEEEccCCcccccCCccccC
Q 047676 358 NLTSLVRVRLNRNYLTGNISESF--YIYPNLTFIDLSHNNFYGEISSDWGRC-----PKLDSLDFSTNNITGNIPSEIGY 430 (576)
Q Consensus 358 ~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~ 430 (576)
+..+..+ ..+++|+.|++++|.+.+. +..+..+ ++|++|++++|++.+..+..+..
T Consensus 109 ----------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 109 ----------------GTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp ----------------SCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred ----------------chhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 3333332 4455555555555555433 3333333 66777777777776555566667
Q ss_pred CCCCCEEeCCCCccccc--Ccccc--cCccCCceeeccccccccc---CCcccccCCCCCEeeCCCCcCccccc-hhccC
Q 047676 431 SSQLEVLDLSSNHIVGE--IPTEL--GKLSFFIKLILAQNQLSGQ---LSPKLGLLVQLEHLDLSSNRLSNSIP-ESLGN 502 (576)
Q Consensus 431 ~~~L~~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~ls~~~~~~~~~-~~~~~ 502 (576)
+++|++|++++|++.+. .+..+ ..+++|++|++++|.+... ....+..+++|++|++++|.+++..+ ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 77777777777765433 12222 6677777777777776631 22334567889999999988886553 45566
Q ss_pred CCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCccccc
Q 047676 503 LVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGV 567 (576)
Q Consensus 503 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 567 (576)
+++|++|++++|+++ .+|..+. ++|++|++++|++.+. |. +..+++|++|++++|++++.
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 789999999999997 5666555 7899999999999765 65 88899999999999998753
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.9e-24 Score=218.99 Aligned_cols=235 Identities=23% Similarity=0.241 Sum_probs=155.4
Q ss_pred CCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEcc
Q 047676 313 TNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLS 392 (576)
Q Consensus 313 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 392 (576)
++|++|++++|.+.+..|..|..+++|+.|++++|.+....+ +..+++|+.|++++|.++... ..++|+.|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 355555555555555444555555666666666555544333 555666666666666665432 22677777777
Q ss_pred CCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCccccc-CccCCceeeccccccccc
Q 047676 393 HNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELG-KLSFFIKLILAQNQLSGQ 471 (576)
Q Consensus 393 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~ 471 (576)
+|.+..... ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.+.
T Consensus 108 ~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 777664433 2356777777777777766666677777777888877777766666554 677778888887777655
Q ss_pred CCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCc-ccCCccCcC
Q 047676 472 LSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLG-REIPSQICI 550 (576)
Q Consensus 472 ~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~ 550 (576)
.....+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+..
T Consensus 185 --~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 --KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp --ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred --cccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 223357788888888888775444 47777888888888888864 5666777788888888888776 455566666
Q ss_pred CCCCceEeCc
Q 047676 551 MQSLEKLNLS 560 (576)
Q Consensus 551 ~~~L~~L~l~ 560 (576)
++.|+.+++.
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 7777776664
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=1.6e-25 Score=215.33 Aligned_cols=247 Identities=23% Similarity=0.190 Sum_probs=141.3
Q ss_pred CCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCC-CCCCcccc-------CCCCCCEEeCCCCcCCCCCCccc-
Q 047676 71 SFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFF-GAIPPQIG-------HLSYLKTLNLSKNKLSGSIPLEV- 141 (576)
Q Consensus 71 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~- 141 (576)
..++|+.|++++|.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|.+++..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344555555555555 344433322 555555555552 22443333 45666666666666655555544
Q ss_pred -CCCCCCCEEEccccccCcccCcccCCC-----CCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCc--CCccc
Q 047676 142 -GRLSSLNNLTLYANCLEGLIPHSLGNL-----TNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGS--IPHSL 213 (576)
Q Consensus 142 -~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~ 213 (576)
..+++|++|++++|.+... |..+..+ ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 5566666666666665554 4444444 5666666666666555555566666666666666654432 12222
Q ss_pred --cCCCCCcEEEccCcccccc---CCccccCCCCCCEEEccCCCCcccCC-cccCCCCCccEEEccCCcccccccccccC
Q 047676 214 --GNLSNLVILFLDNNLLFGL---IPSELRNLKSLYFLELGNNKLSGPIP-HFFGNLTNLGVLYIYNNLLSGSIPCEIGN 287 (576)
Q Consensus 214 --~~l~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 287 (576)
..+++|++|++++|.++.. ....+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.++ .+|..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 5566677777766666522 12233456677777777777665442 34445667777777777776 4454444
Q ss_pred CCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccc
Q 047676 288 LKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSG 327 (576)
Q Consensus 288 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 327 (576)
++|+.|++++|+++.. +. +..+++|++|++++|.+.+
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6777777777777644 33 6677777777777776653
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=5.3e-22 Score=206.24 Aligned_cols=267 Identities=24% Similarity=0.235 Sum_probs=209.7
Q ss_pred CCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEc
Q 047676 217 SNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNL 296 (576)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 296 (576)
.+++.|+++++.++.+ |..+. ++|+.|++++|.+..... .+++|++|++++|.++. +|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~~l-p~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCSCC-CSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcCcc-ChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 4689999999999855 44443 899999999999985433 46899999999999884 443 6799999999
Q ss_pred ccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeec
Q 047676 297 GFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNI 376 (576)
Q Consensus 297 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 376 (576)
++|.+..... .+++|+.|++++|.+.. .|. .+++|++|++++|.+..... ..++|+.|++.+|.++.+.
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc
Confidence 9999885433 56899999999999875 333 35899999999998875432 4578999999999988754
Q ss_pred CccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCcc
Q 047676 377 SESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLS 456 (576)
Q Consensus 377 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 456 (576)
..+++|+.|++++|.+..... .+++|+.|++++|.+. .++. .+++|+.|++++|.+.+ +| ..++
T Consensus 178 ----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~ 241 (622)
T 3g06_A 178 ----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPS 241 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCT
T ss_pred ----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCC
Confidence 557999999999999875322 3589999999999988 4443 35789999999998875 34 4557
Q ss_pred CCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccC
Q 047676 457 FFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEE 526 (576)
Q Consensus 457 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 526 (576)
+|+.|++++|.+... +. .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+..
T Consensus 242 ~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 242 ELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp TCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred cCcEEECCCCCCCcC-Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 888888888887743 22 5678888888888888 55677888888888888888887766665543
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.6e-22 Score=188.71 Aligned_cols=203 Identities=20% Similarity=0.200 Sum_probs=136.1
Q ss_pred CCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccC
Q 047676 338 KLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFST 417 (576)
Q Consensus 338 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 417 (576)
..+.++++++.+......+. ++++.|+++++.+.......|..+++|+.|++++|.+.......|..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 46777777777664333232 5677777777777766666677777777777777777655555566777777777777
Q ss_pred CcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccc
Q 047676 418 NNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIP 497 (576)
Q Consensus 418 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~ 497 (576)
|++....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 77765555556667777777777777766655566667777777777776665555556666777777777777665555
Q ss_pred hhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcc
Q 047676 498 ESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGR 542 (576)
Q Consensus 498 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 542 (576)
..|..+++|++|++++|+++...+..+..+++|+.|++++|++..
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 556666777777777777665555556666677777777776643
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=7.6e-23 Score=193.31 Aligned_cols=205 Identities=26% Similarity=0.215 Sum_probs=135.7
Q ss_pred CCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEc
Q 047676 73 PHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTL 152 (576)
Q Consensus 73 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 152 (576)
+++++|++++|.+.+..+.+|..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46888899888888766667888888888888888887666667888888888888888888666677888888888888
Q ss_pred cccccCcccCcccCCCCCCCEEEeecccCccc-CCccccCCCccceeeccCCcCCCcCCccccCCCCCc----EEEccCc
Q 047676 153 YANCLEGLIPHSLGNLTNLAILYLYNNSLSGS-IPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLV----ILFLDNN 227 (576)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~~~ 227 (576)
++|.+....+..+.++++|++|++++|.++.. .+..+..+++|+.|++++|.+++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 88887777666777788888888887777642 355666666666666666666544444444444444 4555555
Q ss_pred cccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCccc
Q 047676 228 LLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLS 278 (576)
Q Consensus 228 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 278 (576)
.+....+..+.. .+|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 554443333222 24555555555544443334444444555555444443
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.8e-23 Score=213.23 Aligned_cols=227 Identities=23% Similarity=0.229 Sum_probs=194.2
Q ss_pred ccCCCCcEEEccCCcccccCC-CCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCE
Q 047676 334 QNLVKLTKLLLGNNQFQGPIP-NLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDS 412 (576)
Q Consensus 334 ~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 412 (576)
..+++|+.|++++|.+....+ .+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+.. ..++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 345589999999999987765 48899999999999999987654 889999999999999987543 3489999
Q ss_pred EEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccc-cCCCCCEeeCCCCc
Q 047676 413 LDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLG-LLVQLEHLDLSSNR 491 (576)
Q Consensus 413 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~ls~~~ 491 (576)
|++++|.+.+..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999999865443 468899999999999988888899999999999999999987666665 78999999999999
Q ss_pred CccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCccc-cccCc
Q 047676 492 LSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLS-GVIPR 570 (576)
Q Consensus 492 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-~~~p~ 570 (576)
+++..+ ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++. +.+|.
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred cccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 986533 3468999999999999986544 58899999999999999975 6777889999999999999997 66666
Q ss_pred cccc
Q 047676 571 CFEE 574 (576)
Q Consensus 571 ~~~~ 574 (576)
.+..
T Consensus 257 ~~~~ 260 (487)
T 3oja_A 257 FFSK 260 (487)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 5543
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=7.3e-23 Score=192.65 Aligned_cols=186 Identities=23% Similarity=0.193 Sum_probs=105.5
Q ss_pred ccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCc
Q 047676 380 FYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFI 459 (576)
Q Consensus 380 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 459 (576)
+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 33444555555555444322 2344555555555555555544444455555556666655555544444455556666
Q ss_pred eeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCc
Q 047676 460 KLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNF 539 (576)
Q Consensus 460 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 539 (576)
+|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 66666665554444445566666666666666665555555666666666666666665555556666666666666665
Q ss_pred CcccCCccCcCCCCCceEeCcCCccccccCccccc
Q 047676 540 LGREIPSQICIMQSLEKLNLSHNSLSGVIPRCFEE 574 (576)
Q Consensus 540 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~~~~ 574 (576)
+.+ .+++|+.+++++|.++|.+|..+..
T Consensus 217 ~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 217 WDC-------TCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp BCC-------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred ccc-------cCcHHHHHHHHHHhCCCcccCcccc
Confidence 532 2445666666666666666665544
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3e-22 Score=188.41 Aligned_cols=210 Identities=23% Similarity=0.252 Sum_probs=148.3
Q ss_pred ccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCC
Q 047676 68 SFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSL 147 (576)
Q Consensus 68 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 147 (576)
....+++|+.|+++++.+... ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 345667788888888876532 347778888888888887764 3 367778888888888888776666667778888
Q ss_pred CEEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCc
Q 047676 148 NNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNN 227 (576)
Q Consensus 148 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 227 (576)
++|++++|.+....+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 88888888777776767777788888888887777555555677777777777777777555555667777777777777
Q ss_pred cccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCC
Q 047676 228 LLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNL 288 (576)
Q Consensus 228 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 288 (576)
.+....+..+..+++|+.|++++|.+. +.+++++.+++..+.+.+.+|..++.+
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 777666666677777777777777654 224556666666666666666555544
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2e-23 Score=203.63 Aligned_cols=252 Identities=17% Similarity=0.190 Sum_probs=161.0
Q ss_pred CcEEEcccCcccccCchhcccC--CCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceee-cCccccCCCCCcEEEc
Q 047676 315 LVFLSFYQNSLSGAIPKEYQNL--VKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGN-ISESFYIYPNLTFIDL 391 (576)
Q Consensus 315 L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l 391 (576)
++.++++++.+. +..+..+ +.++.++++++.+....+.+..+++|+.|++++|.+... ....+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 455555555443 2334444 567777777776666656566677777777777766543 4555667777777777
Q ss_pred cCCccccccCcccCCCCCCCEEEccCC-ccccc-CCccccCCCCCCEEeCCCC-ccccc-CcccccCcc-CCceeecccc
Q 047676 392 SHNNFYGEISSDWGRCPKLDSLDFSTN-NITGN-IPSEIGYSSQLEVLDLSSN-HIVGE-IPTELGKLS-FFIKLILAQN 466 (576)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~~ 466 (576)
++|.+++.....+..+++|++|++++| .+++. ++..+..+++|++|++++| .+.+. .+..+..++ +|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 777766555556667777777777777 45532 4455667777777777777 66543 345566777 7777877777
Q ss_pred --ccc-ccCCcccccCCCCCEeeCCCCc-CccccchhccCCCCCCEeeCCCCc-CCCCccccccCCCCCCEEeCCCCcCc
Q 047676 467 --QLS-GQLSPKLGLLVQLEHLDLSSNR-LSNSIPESLGNLVKLHYLNLSNNH-FSREIPIKLEELIHLSELDLSYNFLG 541 (576)
Q Consensus 467 --~~~-~~~~~~~~~~~~L~~L~ls~~~-~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~ 541 (576)
.+. ...+..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| +.
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence 343 2233445667778888888777 565556667777788888887774 33222235667777888888877 32
Q ss_pred ccCCccCcCC-CCCceEeCcCCccccccCcccc
Q 047676 542 REIPSQICIM-QSLEKLNLSHNSLSGVIPRCFE 573 (576)
Q Consensus 542 ~~~~~~l~~~-~~L~~L~l~~~~l~~~~p~~~~ 573 (576)
.. .+..+ .+++.|++++|.++++.|..+.
T Consensus 285 ~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 285 DG---TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred HH---HHHHHHhhCcceEEecccCccccCCccc
Confidence 22 22222 2355666777777777776554
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.5e-21 Score=184.88 Aligned_cols=203 Identities=23% Similarity=0.189 Sum_probs=140.2
Q ss_pred cccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCE
Q 047676 333 YQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDS 412 (576)
Q Consensus 333 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 412 (576)
+..++++++++++++.+....+.+. +.++.|++++|.++......|..+++|+.|++++|.++.... ...+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence 5567778888888877765544443 577788888887777767777777888888888777764432 256777777
Q ss_pred EEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcC
Q 047676 413 LDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRL 492 (576)
Q Consensus 413 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~ 492 (576)
|++++|++. .+|..+..+++|++|++++|++.+..+..|.++++|++|++++|++....+..+..+++|+.|++++|.+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 777777776 5566666777777777777777665556677777777777777777665555566677777777777777
Q ss_pred ccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCc
Q 047676 493 SNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLG 541 (576)
Q Consensus 493 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 541 (576)
+...+..+..+++|+.|++++|+++ .+|..+....+|+.|++++|++.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 6555555666677777777777775 44555555667777777777664
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1e-20 Score=179.27 Aligned_cols=202 Identities=26% Similarity=0.232 Sum_probs=147.2
Q ss_pred ccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCC-CCCCCCCcEEEccCccceeecCccccCCCCCc
Q 047676 309 LSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLNRNYLTGNISESFYIYPNLT 387 (576)
Q Consensus 309 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 387 (576)
+..+++++++++.++.+.. +|..+ .+.++.|++++|.+....+. +..+++|+.|++++|.++..... ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 4566778888888777763 33333 25778888888877655443 67778888888888877765443 6678888
Q ss_pred EEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeeccccc
Q 047676 388 FIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQ 467 (576)
Q Consensus 388 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 467 (576)
.|++++|.+. ..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+..|..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 8888888776 345566778888888888888876666677778888888888888776666667778888888888888
Q ss_pred ccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCC
Q 047676 468 LSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFS 517 (576)
Q Consensus 468 ~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 517 (576)
+.......+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 77665556677888888888888877 45555666677888888888774
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2.4e-23 Score=202.99 Aligned_cols=233 Identities=17% Similarity=0.167 Sum_probs=156.4
Q ss_pred CccceeeeCCCCCEEEEEcCCCCcccccCCcccCCC--CCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCC-C
Q 047676 37 CAWVGIHCNHGGRVNSINLTNIGLKGTLHDFSFSSF--PHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGA-I 113 (576)
Q Consensus 37 ~~~~~~~c~~~~~i~~l~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~ 113 (576)
..|.++.|+ ....++++++++.+... .+.++ ++++.|+++++.+.+..+. +..+++|++|++++|.+.+. +
T Consensus 37 ~~W~~~~~~-~~~~~~l~l~~~~~~~~----~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~ 110 (336)
T 2ast_B 37 KRWYRLASD-ESLWQTLDLTGKNLHPD----VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTL 110 (336)
T ss_dssp HHHHHHHTC-STTSSEEECTTCBCCHH----HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHH
T ss_pred HHHHHHhcC-chhheeeccccccCCHH----HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHH
Confidence 458877654 34578888888766532 45555 7888888888888766554 55788888888888887644 6
Q ss_pred CccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEcccc-ccCcc-cCcccCCCCCCCEEEeecc-cCccc-CCccc
Q 047676 114 PPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYAN-CLEGL-IPHSLGNLTNLAILYLYNN-SLSGS-IPSEI 189 (576)
Q Consensus 114 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~ 189 (576)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+... .+..+.++++|++|++++| .+++. .+..+
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence 777788888888888888877667777788888888888888 45542 4555677788888888887 66543 34445
Q ss_pred cCCC-ccceeeccCC--cCC-CcCCccccCCCCCcEEEccCcc-ccccCCccccCCCCCCEEEccCCC-CcccCCcccCC
Q 047676 190 GNLK-FLSRTALSHN--KLS-GSIPHSLGNLSNLVILFLDNNL-LFGLIPSELRNLKSLYFLELGNNK-LSGPIPHFFGN 263 (576)
Q Consensus 190 ~~l~-~L~~L~l~~~--~~~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~ 263 (576)
..++ +|+.|++++| .++ +.++..+..+++|+.|++++|. ++...+..+..+++|+.|++++|. +.......+..
T Consensus 191 ~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 270 (336)
T 2ast_B 191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 270 (336)
T ss_dssp HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc
Confidence 6666 7777777776 333 2344445566667777776666 454445556666666666666663 22222223445
Q ss_pred CCCccEEEccCC
Q 047676 264 LTNLGVLYIYNN 275 (576)
Q Consensus 264 ~~~L~~L~l~~~ 275 (576)
+++|+.|++++|
T Consensus 271 ~~~L~~L~l~~~ 282 (336)
T 2ast_B 271 IPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEeccCc
Confidence 566666666655
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.5e-20 Score=174.51 Aligned_cols=189 Identities=24% Similarity=0.246 Sum_probs=128.9
Q ss_pred CCCccceeeeCCCCCEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCC
Q 047676 35 GPCAWVGIHCNHGGRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIP 114 (576)
Q Consensus 35 ~~~~~~~~~c~~~~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 114 (576)
+|+.|.|..|.. ..++++++++++.. +|. .+. ++++.|++++|.+.+..+.+|..+++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~~--~~~~l~~~~~~l~~-~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE--GKKEVDCQGKSLDS-VPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG--GGTEEECTTCCCSS-CCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC--CCeEEecCCCCccc-cCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 456788888853 34567888877763 333 222 578888888888887777778888888888888888877777
Q ss_pred ccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCc
Q 047676 115 PQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKF 194 (576)
Q Consensus 115 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 194 (576)
..|..+++|++|++++|.++...+..+..+++|++|++++|.+..+.+..+.++++|++|++++|.+++..+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 77788888888888888887665666777778888888887777766666777777777777777766444445555555
Q ss_pred cceeeccCCcCCCcCCccccCCCCCcEEEccCccc
Q 047676 195 LSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLL 229 (576)
Q Consensus 195 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 229 (576)
|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 55555555555544333444444555555544443
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=7.5e-21 Score=175.39 Aligned_cols=197 Identities=17% Similarity=0.175 Sum_probs=138.0
Q ss_pred CCCCEEECCCCCCcccCCccccCCCCCcEEECcCCc-CCCCCCccccCCCCCCEEeCCC-CcCCCCCCcccCCCCCCCEE
Q 047676 73 PHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNS-FFGAIPPQIGHLSYLKTLNLSK-NKLSGSIPLEVGRLSSLNNL 150 (576)
Q Consensus 73 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L 150 (576)
+++++|++++|.+.+..+.+|..+++|++|++++|. +....+..|.++++|++|++++ |.++...+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378899999998887766788888999999999886 7655666788888888888887 78875556677888888888
Q ss_pred EccccccCcccCcccCCCCCCC---EEEeecc-cCcccCCccccCCCccc-eeeccCCcCCCcCCccccCCCCCcEEEcc
Q 047676 151 TLYANCLEGLIPHSLGNLTNLA---ILYLYNN-SLSGSIPSEIGNLKFLS-RTALSHNKLSGSIPHSLGNLSNLVILFLD 225 (576)
Q Consensus 151 ~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 225 (576)
++++|.+..+ |. +..+++|+ +|++++| .++...+..|..+++|+ .+++++|.++ .+|......++|+.|+++
T Consensus 111 ~l~~n~l~~l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKMF-PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCSC-CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCccc-cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 8888887764 33 77777777 8888887 77665556677777777 7777777666 333322222666777777
Q ss_pred Ccc-ccccCCccccCC-CCCCEEEccCCCCcccCCcccCCCCCccEEEccCC
Q 047676 226 NNL-LFGLIPSELRNL-KSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNN 275 (576)
Q Consensus 226 ~~~-~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 275 (576)
+|. ++...+..|..+ ++|+.|++++|++....+. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 663 665555566666 6666666666666543322 3445555555543
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=8.7e-21 Score=174.95 Aligned_cols=197 Identities=19% Similarity=0.155 Sum_probs=143.8
Q ss_pred CCCcEEEccCccceeecCccccCCCCCcEEEccCCc-cccccCcccCCCCCCCEEEccC-CcccccCCccccCCCCCCEE
Q 047676 360 TSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNN-FYGEISSDWGRCPKLDSLDFST-NNITGNIPSEIGYSSQLEVL 437 (576)
Q Consensus 360 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L 437 (576)
++++.|+++++.++......|..+++|+.|++++|. +.......|..+++|++|++++ |++....+..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 367777777777776666677777777777777775 6655555677777888888877 77775555667777788888
Q ss_pred eCCCCcccccCcccccCccCCc---eeecccc-cccccCCcccccCCCCC-EeeCCCCcCccccchhccCCCCCCEeeCC
Q 047676 438 DLSSNHIVGEIPTELGKLSFFI---KLILAQN-QLSGQLSPKLGLLVQLE-HLDLSSNRLSNSIPESLGNLVKLHYLNLS 512 (576)
Q Consensus 438 ~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~ls~~~~~~~~~~~~~~l~~L~~L~l~ 512 (576)
++++|++.+ .|. +..+++|+ .|++++| .+.......+..+++|+ +|++++|.++...+..+.. ++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 888777764 444 66677777 8888888 77766666677888888 8888888887444445555 788888888
Q ss_pred CCc-CCCCccccccCC-CCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCC
Q 047676 513 NNH-FSREIPIKLEEL-IHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHN 562 (576)
Q Consensus 513 ~~~-~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 562 (576)
+|+ ++...+..|..+ ++|++|++++|++.+ +|.. .+++|+.|++.+|
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 885 776666777888 888888888888854 3433 5678888888876
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=3.5e-20 Score=172.10 Aligned_cols=178 Identities=21% Similarity=0.189 Sum_probs=95.3
Q ss_pred CcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCC
Q 047676 362 LVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSS 441 (576)
Q Consensus 362 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 441 (576)
.+.+++.++.++.+... + .++++.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~~~p~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSG-I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCSSCCSC-C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCccccCCC-C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 44555555555433221 1 14556666666655554444555556666666666655544444555555566666665
Q ss_pred CcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCcc
Q 047676 442 NHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIP 521 (576)
Q Consensus 442 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 521 (576)
|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 55554444455555555555555555554444444555555555555555554444445555555555555555554444
Q ss_pred ccccCCCCCCEEeCCCCcCcc
Q 047676 522 IKLEELIHLSELDLSYNFLGR 542 (576)
Q Consensus 522 ~~~~~l~~L~~L~l~~~~~~~ 542 (576)
..+..+++|++|++++|++..
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCT
T ss_pred HHHhCCCCCCEEEeeCCceeC
Confidence 455555555555555555543
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.9e-20 Score=179.30 Aligned_cols=195 Identities=24% Similarity=0.276 Sum_probs=138.1
Q ss_pred cccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCE
Q 047676 333 YQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDS 412 (576)
Q Consensus 333 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 412 (576)
...+++|++|+++++.+... +.+..+++|+.|++++|.+..... +..+++|+.|++++|.+... ..+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 34577888888888877643 456777888888888887776544 77778888888888877643 35677788888
Q ss_pred EEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcC
Q 047676 413 LDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRL 492 (576)
Q Consensus 413 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~ 492 (576)
|++++|++.+ ++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+... +..+++|++|++++|.+
T Consensus 112 L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 8888887764 33 36777788888888877764433 6677777777777777765322 66777777777777777
Q ss_pred ccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcc
Q 047676 493 SNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGR 542 (576)
Q Consensus 493 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 542 (576)
++..+ +..+++|++|++++|++++.. .+..+++|++|++++|++.+
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 65433 667777777777777776543 36677777777777777744
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.3e-22 Score=201.53 Aligned_cols=189 Identities=20% Similarity=0.227 Sum_probs=119.9
Q ss_pred cCCCCCcEEEccCCcccc----ccCcccCCCCCCCEEEccCCcccccCCc----cccCC---------CCCCEEeCCCCc
Q 047676 381 YIYPNLTFIDLSHNNFYG----EISSDWGRCPKLDSLDFSTNNITGNIPS----EIGYS---------SQLEVLDLSSNH 443 (576)
Q Consensus 381 ~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~---------~~L~~L~l~~~~ 443 (576)
..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++...+. .+..+ ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 456667777777666654 2334556677777777777766533222 22223 677777777777
Q ss_pred cccc-Cc---ccccCccCCceeeccccccccc-----CCcccccCCCCCEeeCCCCcCc----cccchhccCCCCCCEee
Q 047676 444 IVGE-IP---TELGKLSFFIKLILAQNQLSGQ-----LSPKLGLLVQLEHLDLSSNRLS----NSIPESLGNLVKLHYLN 510 (576)
Q Consensus 444 ~~~~-~~---~~l~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~ls~~~~~----~~~~~~~~~l~~L~~L~ 510 (576)
+.+. .+ ..+..+++|+.|++++|.+... .+..+..+++|++|++++|.++ ..++..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 6522 22 3455667777777777776532 2225567777778888777775 34556677777788888
Q ss_pred CCCCcCCCC----ccccccC--CCCCCEEeCCCCcCcc----cCCccC-cCCCCCceEeCcCCccccccC
Q 047676 511 LSNNHFSRE----IPIKLEE--LIHLSELDLSYNFLGR----EIPSQI-CIMQSLEKLNLSHNSLSGVIP 569 (576)
Q Consensus 511 l~~~~~~~~----~~~~~~~--l~~L~~L~l~~~~~~~----~~~~~l-~~~~~L~~L~l~~~~l~~~~p 569 (576)
+++|+++.. ++..+.. +++|++|++++|.+.+ .+|..+ ..+++|++|++++|++++..|
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 888777654 2334432 6778888888887766 355555 446778888888887775553
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=4.5e-22 Score=195.57 Aligned_cols=251 Identities=18% Similarity=0.172 Sum_probs=142.4
Q ss_pred eEEcccccccccCCccccCCCCCcEEEcccCcccccCc----hhcccCC-CCcEEEccCCcccccCCC-CCC-----CCC
Q 047676 293 ELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIP----KEYQNLV-KLTKLLLGNNQFQGPIPN-LRN-----LTS 361 (576)
Q Consensus 293 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~-~~~-----~~~ 361 (576)
.++++.+.++...+..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+....+. +.. .++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35666776665555555555668888888888776655 5666777 788888887777654332 222 266
Q ss_pred CcEEEccCccceeecCcc----ccCC-CCCcEEEccCCccccccCcc----cCC-CCCCCEEEccCCcccccCC----cc
Q 047676 362 LVRVRLNRNYLTGNISES----FYIY-PNLTFIDLSHNNFYGEISSD----WGR-CPKLDSLDFSTNNITGNIP----SE 427 (576)
Q Consensus 362 L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~~~~----~~ 427 (576)
|+.|++++|.++...... +..+ ++|+.|++++|.++...... +.. +++|++|++++|++.+... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 777777777766544332 2333 66777777777665443322 223 3467777777776664322 22
Q ss_pred ccCCC-CCCEEeCCCCcccccCcccc----cCc-cCCceeecccccccccC----Cccccc-CCCCCEeeCCCCcCcccc
Q 047676 428 IGYSS-QLEVLDLSSNHIVGEIPTEL----GKL-SFFIKLILAQNQLSGQL----SPKLGL-LVQLEHLDLSSNRLSNSI 496 (576)
Q Consensus 428 ~~~~~-~L~~L~l~~~~~~~~~~~~l----~~l-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~ls~~~~~~~~ 496 (576)
+...+ +|++|++++|++.+..+..+ ..+ ++|++|++++|.+.+.. +..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 33333 67777777776655544332 233 46666666666665422 122223 346666666666665433
Q ss_pred c----hhccCCCCCCEeeCCCCcCCCCcc-------ccccCCCCCCEEeCCCCcCccc
Q 047676 497 P----ESLGNLVKLHYLNLSNNHFSREIP-------IKLEELIHLSELDLSYNFLGRE 543 (576)
Q Consensus 497 ~----~~~~~l~~L~~L~l~~~~~~~~~~-------~~~~~l~~L~~L~l~~~~~~~~ 543 (576)
+ ..+..+++|++|++++|.+....+ ..+..+++|++|++++|++...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 2 233455666666666666332222 2344556666666666666444
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=7e-21 Score=182.85 Aligned_cols=181 Identities=25% Similarity=0.210 Sum_probs=126.3
Q ss_pred cCCCCCcEEEccCCccccccC----cccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCccccc--C--cccc
Q 047676 381 YIYPNLTFIDLSHNNFYGEIS----SDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGE--I--PTEL 452 (576)
Q Consensus 381 ~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~l 452 (576)
..+++|+.|++++|.+....+ ..+..+++|++|++++|++.+..+..+..+++|++|++++|++.+. . +..+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 344445555555554443211 2234577777777777777766666777777788888877775432 1 2234
Q ss_pred cCccCCceeecccccccccCC--c-ccccCCCCCEeeCCCCcCccccchhccCC---CCCCEeeCCCCcCCCCccccccC
Q 047676 453 GKLSFFIKLILAQNQLSGQLS--P-KLGLLVQLEHLDLSSNRLSNSIPESLGNL---VKLHYLNLSNNHFSREIPIKLEE 526 (576)
Q Consensus 453 ~~l~~L~~L~l~~~~~~~~~~--~-~~~~~~~L~~L~ls~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~ 526 (576)
..+++|++|++++|++..... . .+..+++|++|++++|.+.+..|..+..+ ++|++|++++|+++ .+|..+.
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~- 271 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP- 271 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-
Confidence 577788888888888753211 1 24677899999999999887766666665 69999999999997 5566554
Q ss_pred CCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCcccc
Q 047676 527 LIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSG 566 (576)
Q Consensus 527 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 566 (576)
++|++|++++|++.+. |. +..+++|++|++++|++++
T Consensus 272 -~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 272 -AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred -CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 7999999999999764 33 6778999999999999874
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=5e-20 Score=176.36 Aligned_cols=194 Identities=25% Similarity=0.384 Sum_probs=115.5
Q ss_pred cCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCC
Q 047676 69 FSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLN 148 (576)
Q Consensus 69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 148 (576)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+ ++ .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCC
Confidence 3456677777777777653 33 46777777777777777763 333 7777777777777777663 33 566777777
Q ss_pred EEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCcc
Q 047676 149 NLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNL 228 (576)
Q Consensus 149 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 228 (576)
+|++++|.+.... .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+. +. +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCc
Confidence 7777777766542 26667777777777766653322 55556666666666655532 22 5555556666665555
Q ss_pred ccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCccc
Q 047676 229 LFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLS 278 (576)
Q Consensus 229 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 278 (576)
+....+ +..+++|+.|++++|++.+.. .+..+++|+.|++++|.++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 544322 455555555555555554332 2444555555555555544
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=6.8e-22 Score=194.30 Aligned_cols=178 Identities=22% Similarity=0.170 Sum_probs=105.3
Q ss_pred EEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCC----ccccCCC-CCcEEECcCCcCCCCCCccccCC-----CC
Q 047676 53 INLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIP----PQIGNIS-KLKYLDLSSNSFFGAIPPQIGHL-----SY 122 (576)
Q Consensus 53 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 122 (576)
+.++.+++.+.++. .+...++|++|++++|.+.+..+ +++..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHH-HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45667777776665 45555568888888887765554 5667777 78888888887776655555553 77
Q ss_pred CCEEeCCCCcCCCCCCcc----cCCC-CCCCEEEccccccCcccCcc----cCC-CCCCCEEEeecccCcccCCcc----
Q 047676 123 LKTLNLSKNKLSGSIPLE----VGRL-SSLNNLTLYANCLEGLIPHS----LGN-LTNLAILYLYNNSLSGSIPSE---- 188 (576)
Q Consensus 123 L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~~~~~---- 188 (576)
|++|++++|.+++..+.. +..+ ++|++|++++|.+....+.. +.. .++|++|++++|.+++.....
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 888888888776544443 3333 67777777777766554433 223 246777777776665432222
Q ss_pred ccCCC-ccceeeccCCcCCCcCCccc----cCC-CCCcEEEccCccccc
Q 047676 189 IGNLK-FLSRTALSHNKLSGSIPHSL----GNL-SNLVILFLDNNLLFG 231 (576)
Q Consensus 189 ~~~l~-~L~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~l~~~~~~~ 231 (576)
+..++ +|+.|++++|.+++..+..+ ..+ ++|++|++++|.+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 22332 55555555555543333222 222 355555555555443
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=4.5e-22 Score=197.66 Aligned_cols=245 Identities=18% Similarity=0.190 Sum_probs=132.9
Q ss_pred ccccccCCCCCCeEEcccccccccCC----ccccCCCCCcEEEcccCcc---cccCchhc-------ccCCCCcEEEccC
Q 047676 281 IPCEIGNLKFLSELNLGFNKLSNSIP----VSLSNLTNLVFLSFYQNSL---SGAIPKEY-------QNLVKLTKLLLGN 346 (576)
Q Consensus 281 ~~~~~~~l~~L~~L~L~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~---~~~~~~~~-------~~l~~L~~L~l~~ 346 (576)
++..+..+++|+.|++++|.+..... ..+..+++|++|++++|.+ .+..|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 33445556667777777776654322 2244566666666666432 22223222 3444555555554
Q ss_pred CcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcc----cCCC---------CCCCEE
Q 047676 347 NQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSD----WGRC---------PKLDSL 413 (576)
Q Consensus 347 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~---------~~L~~L 413 (576)
|.+...... .++..+..+++|+.|++++|.+....... +..+ ++|++|
T Consensus 104 n~l~~~~~~-------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 104 NAFGPTAQE-------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp CCCCTTTHH-------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred CcCCHHHHH-------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 444321000 22334445566666666666554222111 2222 666666
Q ss_pred EccCCcccc-cCC---ccccCCCCCCEEeCCCCccccc-----CcccccCccCCceeeccccccc----ccCCcccccCC
Q 047676 414 DFSTNNITG-NIP---SEIGYSSQLEVLDLSSNHIVGE-----IPTELGKLSFFIKLILAQNQLS----GQLSPKLGLLV 480 (576)
Q Consensus 414 ~l~~~~~~~-~~~---~~~~~~~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~----~~~~~~~~~~~ 480 (576)
++++|++.. .++ ..+..+++|++|++++|.+... .+..+..+++|+.|++++|.+. ...+..+..++
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 666666652 222 2445566677777776665421 2225556667777777777664 23344556667
Q ss_pred CCCEeeCCCCcCccc----cchhccC--CCCCCEeeCCCCcCCC----Cccccc-cCCCCCCEEeCCCCcCcccC
Q 047676 481 QLEHLDLSSNRLSNS----IPESLGN--LVKLHYLNLSNNHFSR----EIPIKL-EELIHLSELDLSYNFLGREI 544 (576)
Q Consensus 481 ~L~~L~ls~~~~~~~----~~~~~~~--l~~L~~L~l~~~~~~~----~~~~~~-~~l~~L~~L~l~~~~~~~~~ 544 (576)
+|++|++++|.+++. ++..+.. +++|++|++++|+++. .++..+ .++++|++|++++|++.+..
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 777777777776644 3344432 6777777777777765 244444 44677777777777776544
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=178.29 Aligned_cols=225 Identities=19% Similarity=0.119 Sum_probs=135.5
Q ss_pred CCCCCEEECCCCCCcccCCc---cccCCCCCcEEECcCCcCCCCCCccc--cCCCCCCEEeCCCCcCCCCCC----cccC
Q 047676 72 FPHLAYLDLWSNQLFGNIPP---QIGNISKLKYLDLSSNSFFGAIPPQI--GHLSYLKTLNLSKNKLSGSIP----LEVG 142 (576)
Q Consensus 72 ~~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~ 142 (576)
...++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34567777777766432111 12234568888888888777777776 778888888888887775433 3345
Q ss_pred CCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCccc----CCccccCCCccceeeccCCcCCCcCCc----ccc
Q 047676 143 RLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGS----IPSEIGNLKFLSRTALSHNKLSGSIPH----SLG 214 (576)
Q Consensus 143 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~ 214 (576)
.+++|++|++++|.+....+..+.++++|++|++++|.+.+. .+..+..+++|++|++++|.++. ++. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 677788888888877777777777778888888887775431 12223556677777777776652 222 134
Q ss_pred CCCCCcEEEccCccccccCCccccCC---CCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCC
Q 047676 215 NLSNLVILFLDNNLLFGLIPSELRNL---KSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFL 291 (576)
Q Consensus 215 ~l~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 291 (576)
.+++|++|++++|.+....|..+..+ ++|++|++++|++... +..+. ++|++|++++|.+++. |. +..+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 55666666666666665544444444 4666666666666532 22221 4556666666555532 21 3445555
Q ss_pred CeEEccccccc
Q 047676 292 SELNLGFNKLS 302 (576)
Q Consensus 292 ~~L~L~~~~~~ 302 (576)
+.|++++|.++
T Consensus 297 ~~L~L~~N~l~ 307 (310)
T 4glp_A 297 DNLTLDGNPFL 307 (310)
T ss_dssp SCEECSSTTTS
T ss_pred cEEECcCCCCC
Confidence 55555555544
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=2.4e-19 Score=161.39 Aligned_cols=188 Identities=23% Similarity=0.220 Sum_probs=135.7
Q ss_pred CCCCCccceeeeCCCCCEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCC
Q 047676 33 KIGPCAWVGIHCNHGGRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGA 112 (576)
Q Consensus 33 ~~~~~~~~~~~c~~~~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 112 (576)
....|.|.++.|...+ +. .++. .-.+++++|++++|.+.+..+..|..+++|++|++++|.+.+.
T Consensus 3 ~~C~C~~~~v~c~~~~-----------l~-~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 67 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQG-----------RT-SVPT---GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67 (208)
T ss_dssp TTCEEETTEEECCSSC-----------CS-SCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CCCEECCCEEEecCCC-----------cc-CCCC---CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc
Confidence 3445889999886532 11 1222 2235788888888887766666677888888888888887755
Q ss_pred CCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCC
Q 047676 113 IPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNL 192 (576)
Q Consensus 113 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 192 (576)
.+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+..+.+..+.++++|++|++++|.+++..+..+..+
T Consensus 68 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 147 (208)
T 2o6s_A 68 PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC
Confidence 55567788888888888888875555557788888888888888877777777888888888888888776655567778
Q ss_pred CccceeeccCCcCCCcCCccccCCCCCcEEEccCccccccCCccccCCCC
Q 047676 193 KFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKS 242 (576)
Q Consensus 193 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 242 (576)
++|+.|++++|.+. +.++.|+.|+++.+.++...|.+++.++.
T Consensus 148 ~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 148 TSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 88888888887554 24567788888877777776766665543
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=4.8e-19 Score=159.40 Aligned_cols=161 Identities=20% Similarity=0.208 Sum_probs=83.5
Q ss_pred CCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeec
Q 047676 384 PNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLIL 463 (576)
Q Consensus 384 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 463 (576)
++++.|++++|.+.......+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 45566666666555444444555566666666655555443344455555555555555555444444455555555555
Q ss_pred ccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCccc
Q 047676 464 AQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGRE 543 (576)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 543 (576)
++|.+.......+..+++|++|++++|.+++..+..+..+++|+.|++++|++.. .+++|+.|+++.|.+.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 5555554444344455555555555555554444444555555555555554432 233455555555555555
Q ss_pred CCccCcCC
Q 047676 544 IPSQICIM 551 (576)
Q Consensus 544 ~~~~l~~~ 551 (576)
+|..++.+
T Consensus 181 ip~~~~~l 188 (208)
T 2o6s_A 181 VRNSAGSV 188 (208)
T ss_dssp BBCTTSSB
T ss_pred eeccCccc
Confidence 55544443
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=2.2e-18 Score=168.37 Aligned_cols=221 Identities=17% Similarity=0.100 Sum_probs=155.4
Q ss_pred CCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCC-ccccCCCCCCE-EeCCCCcCCCCCCcccCCCCCCCEE
Q 047676 73 PHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIP-PQIGHLSYLKT-LNLSKNKLSGSIPLEVGRLSSLNNL 150 (576)
Q Consensus 73 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~L 150 (576)
+++++|+|++|+++..-+++|.++++|++|+|++|.+.+.+| ..|.++++|++ +.+.+|.++...|..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 578999999999986666789999999999999998865554 46788888775 5556678886667788899999999
Q ss_pred EccccccCcccCcccCCCCCCCEEEeecc-cCcccCCccccCCC-ccceeeccCCcCCCcCCccccCCCCCcEEEccC-c
Q 047676 151 TLYANCLEGLIPHSLGNLTNLAILYLYNN-SLSGSIPSEIGNLK-FLSRTALSHNKLSGSIPHSLGNLSNLVILFLDN-N 227 (576)
Q Consensus 151 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~ 227 (576)
++++|.+....+..+....++..+++.++ .+....+..+..+. .++.|++++|+++. ++.......+|+.+.+.+ +
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCC
Confidence 99999888877777777778888888664 45544555565553 57778888887773 444444456777777764 5
Q ss_pred cccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEccc
Q 047676 228 LLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGF 298 (576)
Q Consensus 228 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 298 (576)
.++.+.+.+|..+++|+.|++++|+++...+..+. +|+.|.+.++.....+| .+..+++|+.+++.+
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred cccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 56666666677778888888888877755544443 34444444433222344 355566666666654
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=6.7e-18 Score=153.98 Aligned_cols=160 Identities=24% Similarity=0.235 Sum_probs=129.5
Q ss_pred CCCCCCccceeeeCCCCCEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCC
Q 047676 32 TKIGPCAWVGIHCNHGGRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFG 111 (576)
Q Consensus 32 ~~~~~~~~~~~~c~~~~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 111 (576)
.+.+.|.|.++.|...+ + ..+|. . -.++|++|++++|.+.+..+..|..+++|++|++++|.+..
T Consensus 14 ~~~~~Cs~~~v~c~~~~-----------l-~~ip~-~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 78 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSKR-----------H-ASVPA-G--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA 78 (229)
T ss_dssp CTTCEEETTEEECTTSC-----------C-SSCCS-C--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCEEeCCEeEccCCC-----------c-CccCC-C--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC
Confidence 47778999999986531 1 12333 1 12788999999999988878888999999999999999876
Q ss_pred CCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccC
Q 047676 112 AIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGN 191 (576)
Q Consensus 112 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 191 (576)
..+..|..+++|++|++++|.++...+..+..+++|++|++++|.+..+ |..+..+++|++|++++|.++...+..+..
T Consensus 79 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 6666778899999999999999866666678899999999999988854 667788999999999999988766677888
Q ss_pred CCccceeeccCCcCCC
Q 047676 192 LKFLSRTALSHNKLSG 207 (576)
Q Consensus 192 l~~L~~L~l~~~~~~~ 207 (576)
+++|+.|++.+|.+..
T Consensus 158 l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CTTCCEEECTTSCBCT
T ss_pred CCCCCEEEeeCCCccC
Confidence 9999999999987764
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=6.4e-18 Score=173.38 Aligned_cols=184 Identities=23% Similarity=0.312 Sum_probs=97.3
Q ss_pred CCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccC
Q 047676 338 KLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFST 417 (576)
Q Consensus 338 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 417 (576)
+++.|++++|.+....+.+ .++|+.|++++|.++.+. ..+++|+.|++++|.++. ++. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 7888888887776533323 256777777777666332 345666666666666654 222 332 666666666
Q ss_pred CcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccc
Q 047676 418 NNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIP 497 (576)
Q Consensus 418 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~ 497 (576)
|++++ +|. .+++|+.|++++|.+.+ +|. .+++|+.|++++|.+.. .+. +. ++|+.|++++|.++ .+|
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 66653 333 45566666666666553 232 34555555555555544 222 32 55555555555555 233
Q ss_pred hhccCCCCC-------CEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcccCCccC
Q 047676 498 ESLGNLVKL-------HYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQI 548 (576)
Q Consensus 498 ~~~~~l~~L-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 548 (576)
. +.. +| +.|++++|+|+ .+|..+..+++|+.|++++|++++.+|..+
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 2 322 34 55555555554 334444445555555555555554444433
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=6.5e-18 Score=160.10 Aligned_cols=172 Identities=26% Similarity=0.307 Sum_probs=122.5
Q ss_pred CCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 047676 357 RNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEV 436 (576)
Q Consensus 357 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 436 (576)
..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+ + ..+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 3466778888888777654 236677888888888887765433 7778888888888887764 2 33777788888
Q ss_pred EeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcC
Q 047676 437 LDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHF 516 (576)
Q Consensus 437 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 516 (576)
|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|++
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 88888877643 4566777788888887777654 456777777888887777775443 67777778888877777
Q ss_pred CCCccccccCCCCCCEEeCCCCcCcc
Q 047676 517 SREIPIKLEELIHLSELDLSYNFLGR 542 (576)
Q Consensus 517 ~~~~~~~~~~l~~L~~L~l~~~~~~~ 542 (576)
+.. + .+..+++|+.|++++|++..
T Consensus 191 ~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 191 SDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCC-h-hhccCCCCCEEECcCCcccC
Confidence 543 2 36777777777777777754
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=1.3e-17 Score=151.03 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=98.9
Q ss_pred cEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccc
Q 047676 387 TFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQN 466 (576)
Q Consensus 387 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 466 (576)
+.++.+++.++.. +..+ .++|+.|++++|++....+..+..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~i-P~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSC-CSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcC-CCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4566666665533 2222 256777777777776555556666777777777777776666666677777777777777
Q ss_pred cccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCc
Q 047676 467 QLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLG 541 (576)
Q Consensus 467 ~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 541 (576)
.+.......+.++++|++|++++|.+++..+..|..+++|+.|++++|+++...+..|..+++|++|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 666555555666667777777777766666666666667777777777766555556666666777777776664
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=1.4e-17 Score=150.67 Aligned_cols=150 Identities=22% Similarity=0.191 Sum_probs=69.6
Q ss_pred EEEccCCccccccCcccCCCCCCCEEEccCCcccccCC-ccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccc
Q 047676 388 FIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIP-SEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQN 466 (576)
Q Consensus 388 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 466 (576)
.++++++.++.. +..+ .+.+++|++++|++.+..+ ..+..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 15 ~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 455555544422 2111 2334555555555543322 23444555555555555554444444444445555555554
Q ss_pred cccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcC
Q 047676 467 QLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFL 540 (576)
Q Consensus 467 ~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 540 (576)
.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..|..+++|++|++++|++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 44444333444444444444444444444444444444444444444444444444444444444444444444
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=2.9e-17 Score=160.39 Aligned_cols=200 Identities=15% Similarity=0.063 Sum_probs=131.9
Q ss_pred cEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCc-ccCcccCCCCCCCE-EEee
Q 047676 100 KYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEG-LIPHSLGNLTNLAI-LYLY 177 (576)
Q Consensus 100 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~-L~l~ 177 (576)
++++.+++.++ .+|..+ .+++++|++++|.++...+.+|.++++|++|++++|.+.+ +.+.+|.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56777887777 667655 3678888888888885445568888888888888888754 44567788888765 4555
Q ss_pred cccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccC-ccccccCCccccCCC-CCCEEEccCCCCcc
Q 047676 178 NNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDN-NLLFGLIPSELRNLK-SLYFLELGNNKLSG 255 (576)
Q Consensus 178 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~ 255 (576)
.|.++...+..|..+++|+.+++++|.+....+..+....++..+++.+ +.+....+.+|..+. .++.|++++|++..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6777766677778888888888888877755555555556667777755 345555555555543 56667777777665
Q ss_pred cCCcccCCCCCccEEEccC-CcccccccccccCCCCCCeEEcccccccc
Q 047676 256 PIPHFFGNLTNLGVLYIYN-NLLSGSIPCEIGNLKFLSELNLGFNKLSN 303 (576)
Q Consensus 256 ~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 303 (576)
+.+..|. ..+|+++.+.+ +.++...+..|..+++|+.|++++|+++.
T Consensus 169 i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 169 IHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp ECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred CChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 4444443 34566666653 34443333445666666666666666553
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=8.2e-18 Score=159.42 Aligned_cols=171 Identities=26% Similarity=0.352 Sum_probs=95.2
Q ss_pred cCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCC
Q 047676 69 FSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLN 148 (576)
Q Consensus 69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 148 (576)
+..+++|+.|++++|.+... + .+..+++|++|++++|.+.+. +. +.++++|++|++++|.+.+ ++ .+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 34566677777777766533 2 366677777777777766633 32 6667777777777776652 22 366666666
Q ss_pred EEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCcc
Q 047676 149 NLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNL 228 (576)
Q Consensus 149 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 228 (576)
+|++++|.+... ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 666666666554 3455566666666666655432 344455555555555555443222 4444555555555554
Q ss_pred ccccCCccccCCCCCCEEEccCCCC
Q 047676 229 LFGLIPSELRNLKSLYFLELGNNKL 253 (576)
Q Consensus 229 ~~~~~~~~l~~l~~L~~L~l~~~~~ 253 (576)
++.. ..+..+++|+.|++++|++
T Consensus 190 i~~l--~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 190 ISDL--RALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCBC--GGGTTCTTCSEEEEEEEEE
T ss_pred CCCC--hhhccCCCCCEEECcCCcc
Confidence 4432 1244444444444444444
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=9.2e-18 Score=172.21 Aligned_cols=192 Identities=25% Similarity=0.339 Sum_probs=133.1
Q ss_pred cccee-eeCCCCCEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCcc
Q 047676 38 AWVGI-HCNHGGRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQ 116 (576)
Q Consensus 38 ~~~~~-~c~~~~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 116 (576)
.|.++ .|.. ++++.|+++++++.+ ++... +++|++|++++|.+. .+| ..+++|++|++++|.+.+ +|.
T Consensus 49 ~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 49 AVSLLKECLI-NQFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp HHHHHHHHHH-TTCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred hhhhcccccc-CCccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-
Confidence 78887 5643 578899999988876 55522 378999999999887 555 457889999999998875 666
Q ss_pred ccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccc
Q 047676 117 IGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLS 196 (576)
Q Consensus 117 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 196 (576)
+.. +|++|++++|.+++ +|. .+++|++|++++|.+..++. .+++|++|++++|.+++ .|. +. ++|+
T Consensus 118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~ 183 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLE 183 (571)
T ss_dssp CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCC
T ss_pred hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCC
Confidence 554 88999999988884 555 67888888888888876433 56788888888888775 444 44 7777
Q ss_pred eeeccCCcCCCcCCccccCCCCC-------cEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCc
Q 047676 197 RTALSHNKLSGSIPHSLGNLSNL-------VILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPH 259 (576)
Q Consensus 197 ~L~l~~~~~~~~~~~~~~~l~~L-------~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 259 (576)
.|++++|.++ .+|. +.. +| +.|++++|.++.+ |..+..+++|+.|++++|.+.+..+.
T Consensus 184 ~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 184 ALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp EEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred EEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 8888877776 4554 433 45 6666666666543 33444466666666666665543333
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=6.4e-17 Score=147.50 Aligned_cols=133 Identities=25% Similarity=0.221 Sum_probs=66.8
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeC
Q 047676 408 PKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDL 487 (576)
Q Consensus 408 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 487 (576)
++|++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+.......+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 55555555555555444455555555555555555554333344455555555555555554443334444555555555
Q ss_pred CCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCc
Q 047676 488 SSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLG 541 (576)
Q Consensus 488 s~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 541 (576)
++|.++ .+|..+..+++|+.|++++|+++...+..+..+++|++|++++|++.
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555554 33444444555555555555554433344444555555555555443
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=2.1e-17 Score=147.08 Aligned_cols=154 Identities=21% Similarity=0.317 Sum_probs=117.2
Q ss_pred CCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCE
Q 047676 405 GRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEH 484 (576)
Q Consensus 405 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 484 (576)
..+++|++|++++|.+. .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45667777777777776 444 5777788888888887654 2346777888888888888887766677888888999
Q ss_pred eeCCCCcCccccchhccCCCCCCEeeCCCCc-CCCCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCc
Q 047676 485 LDLSSNRLSNSIPESLGNLVKLHYLNLSNNH-FSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNS 563 (576)
Q Consensus 485 L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 563 (576)
|++++|.+++..+..+..+++|++|++++|+ +. ..+ .+..+++|++|++++|.+.+. + .+..+++|+.|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 9999998887777788888999999999988 64 444 578888999999999988653 3 57788899999999998
Q ss_pred ccc
Q 047676 564 LSG 566 (576)
Q Consensus 564 l~~ 566 (576)
+.+
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 864
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=4.9e-17 Score=147.15 Aligned_cols=152 Identities=20% Similarity=0.219 Sum_probs=124.9
Q ss_pred EEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCC-ccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCC
Q 047676 52 SINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIP-PQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSK 130 (576)
Q Consensus 52 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 130 (576)
+++++++.+.. +|. .+ .+.+++|++++|.+.+..+ +.|..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 15 ~l~~s~n~l~~-iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLNK-IPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCSS-CCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCccc-Ccc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 45556666553 444 22 2456899999999886644 4578899999999999998877777899999999999999
Q ss_pred CcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCC
Q 047676 131 NKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSG 207 (576)
Q Consensus 131 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 207 (576)
|.+++..+..|..+++|++|++++|.+..+.+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 99987777778899999999999999988888889999999999999999988778888999999999999987763
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=4.3e-17 Score=169.28 Aligned_cols=175 Identities=26% Similarity=0.282 Sum_probs=142.1
Q ss_pred CCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCC
Q 047676 356 LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLE 435 (576)
Q Consensus 356 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 435 (576)
...++.|+.|+++++.+.... .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+ ++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 345678888999988887653 57788999999999998875543 7889999999999998874 33 678889999
Q ss_pred EEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCc
Q 047676 436 VLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNH 515 (576)
Q Consensus 436 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~ 515 (576)
.|++++|.+.+. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|+
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 999999988753 4578889999999999988765 567888999999999999886655 7888999999999999
Q ss_pred CCCCccccccCCCCCCEEeCCCCcCcccC
Q 047676 516 FSREIPIKLEELIHLSELDLSYNFLGREI 544 (576)
Q Consensus 516 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 544 (576)
+.+. ..+..+++|+.|++++|++....
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 8754 35788899999999999886643
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=3.2e-17 Score=160.74 Aligned_cols=176 Identities=26% Similarity=0.202 Sum_probs=104.6
Q ss_pred cEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccC-CCCCCCEEEccCCcccccCCccccCCCCCCEEeCCC
Q 047676 363 VRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWG-RCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSS 441 (576)
Q Consensus 363 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 441 (576)
+.+++.++.++.+... -.+.++.|++++|.++......+. .+++|++|++++|++.+..+..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~---~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS---LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSS---CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCcc---CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4566666666543221 124566777777766655555555 667777777777766655555666666677777766
Q ss_pred CcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhc---cCCCCCCEeeCCCCcCCC
Q 047676 442 NHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESL---GNLVKLHYLNLSNNHFSR 518 (576)
Q Consensus 442 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~ 518 (576)
|.+.+..+..|.++++|+.|++++|.+....+..+..+++|++|++++|.+++..+..+ ..+++|+.|+|++|+++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 66665555556666666666666666665555556666666666666666664433333 345666666666666654
Q ss_pred CccccccCCCC--CCEEeCCCCcCc
Q 047676 519 EIPIKLEELIH--LSELDLSYNFLG 541 (576)
Q Consensus 519 ~~~~~~~~l~~--L~~L~l~~~~~~ 541 (576)
..+..+..++. ++.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 44444555554 355666666553
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=1.4e-16 Score=144.20 Aligned_cols=134 Identities=26% Similarity=0.275 Sum_probs=106.8
Q ss_pred CCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEc
Q 047676 73 PHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTL 152 (576)
Q Consensus 73 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 152 (576)
++++.|++++|.+.+..+.+|..+++|++|++++|.+.+..|..|.++++|++|++++|.++...+..|..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 67899999999888777778888899999999999888777888888899999999988888555555778888888888
Q ss_pred cccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCC
Q 047676 153 YANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLS 206 (576)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 206 (576)
++|.+..+.+..|..+++|++|++++|.++...+..+..+++|+.+++++|.+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888888777777888888888888888777665556666666777766666543
No 112
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.71 E-value=1.3e-15 Score=151.16 Aligned_cols=63 Identities=6% Similarity=0.016 Sum_probs=33.1
Q ss_pred CCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEe
Q 047676 112 AIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYL 176 (576)
Q Consensus 112 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 176 (576)
+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.++ +..+...+|.++++|+.+.+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~ 124 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILL 124 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcc
Confidence 34445666666666666532 44344445556666666665443 33344455555555555443
No 113
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.71 E-value=1.3e-15 Score=151.30 Aligned_cols=101 Identities=16% Similarity=0.166 Sum_probs=53.6
Q ss_pred CCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCC
Q 047676 356 LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLE 435 (576)
Q Consensus 356 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 435 (576)
+..+.+|+.+.+..+ +..+...+|..|.+|+.+++..+ +......+|.+|.+|+.+.+..+ +......+|.+|++|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 344455555555432 44444555666666666666533 44344556666666666666544 4434445666666666
Q ss_pred EEeCCCCcccccCcccccCccCCcee
Q 047676 436 VLDLSSNHIVGEIPTELGKLSFFIKL 461 (576)
Q Consensus 436 ~L~l~~~~~~~~~~~~l~~l~~L~~L 461 (576)
.+++..+ +. .....|.++++|+.+
T Consensus 370 ~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 370 KVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EEEECCC-CE-EhhheecCCCCCcEE
Confidence 6666543 11 223356666666554
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=6.4e-17 Score=167.93 Aligned_cols=174 Identities=25% Similarity=0.338 Sum_probs=126.9
Q ss_pred cCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCC
Q 047676 69 FSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLN 148 (576)
Q Consensus 69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 148 (576)
+..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|++|++++|.+. .+| .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCCCCC
Confidence 45667788888888877643 3 57788888888888888774433 778888888888888877 333 677888888
Q ss_pred EEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCcc
Q 047676 149 NLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNL 228 (576)
Q Consensus 149 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 228 (576)
+|++++|.+..+ ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 888888877764 3477788888888888877643 566777778888888777775444 6777777788887777
Q ss_pred ccccCCccccCCCCCCEEEccCCCCccc
Q 047676 229 LFGLIPSELRNLKSLYFLELGNNKLSGP 256 (576)
Q Consensus 229 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 256 (576)
+... ..+..+++|+.|++++|++...
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 7654 3567777777777777776543
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=1.3e-16 Score=156.38 Aligned_cols=176 Identities=29% Similarity=0.217 Sum_probs=149.1
Q ss_pred cEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCcccc-CCCCCcEEEccCCccccccCcccCCCCCCCEEEccCC
Q 047676 340 TKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFY-IYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTN 418 (576)
Q Consensus 340 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 418 (576)
+.++++++.+......+ .+.++.|++++|.++......+. .+++|+.|++++|.+....+..|..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 57888888776544333 34689999999999998888887 8999999999999998777778999999999999999
Q ss_pred cccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCccc---ccCCCCCEeeCCCCcCccc
Q 047676 419 NITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKL---GLLVQLEHLDLSSNRLSNS 495 (576)
Q Consensus 419 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~ls~~~~~~~ 495 (576)
++....+..+..+++|++|++++|.+.+..+..|.++++|+.|++++|.+.......+ ..+++|+.|++++|.++..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 9987777788999999999999999988888889999999999999999987655545 5689999999999999976
Q ss_pred cchhccCCCC--CCEeeCCCCcCC
Q 047676 496 IPESLGNLVK--LHYLNLSNNHFS 517 (576)
Q Consensus 496 ~~~~~~~l~~--L~~L~l~~~~~~ 517 (576)
.+..+..++. ++.|++++|++.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 6677777777 488999999985
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=6.2e-17 Score=150.79 Aligned_cols=169 Identities=23% Similarity=0.255 Sum_probs=112.2
Q ss_pred CCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeC
Q 047676 360 TSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDL 439 (576)
Q Consensus 360 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 439 (576)
..+..+++.++.+++.. .+..+++|+.|++++|.+.... .+..+++|++|++++|++.+..+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34555566666665543 4566777778888777776432 56677777777777777764333 777777777777
Q ss_pred CCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCC
Q 047676 440 SSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSRE 519 (576)
Q Consensus 440 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 519 (576)
++|++.+. +. +.. ++|+.|++++|.+.+. ..+..+++|++|++++|.+++. + .+..+++|+.|++++|++++.
T Consensus 93 ~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 77777643 22 222 6777777777777653 3466777777777777777654 2 466677777777777777654
Q ss_pred ccccccCCCCCCEEeCCCCcCccc
Q 047676 520 IPIKLEELIHLSELDLSYNFLGRE 543 (576)
Q Consensus 520 ~~~~~~~l~~L~~L~l~~~~~~~~ 543 (576)
..+..+++|+.|++++|++...
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 4566777777777777777544
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=1.4e-16 Score=154.10 Aligned_cols=263 Identities=12% Similarity=0.058 Sum_probs=137.6
Q ss_pred CCCCCEEEeecccCc--ccCCccccCCCccceeeccCCcCCCcCCccccC--------CCCCcEEEccCccccccCCccc
Q 047676 168 LTNLAILYLYNNSLS--GSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGN--------LSNLVILFLDNNLLFGLIPSEL 237 (576)
Q Consensus 168 l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~l 237 (576)
+++|++|++++|.+. ......+ +.++.+....+.+ .+..|.+ +++|+.+++.+ .++.+...+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 566777777776655 1111111 1223333333322 2234455 77777777777 6666777777
Q ss_pred cCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcc----cccccccccCCCCCC-eEEcccccccccCCccccCC
Q 047676 238 RNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLL----SGSIPCEIGNLKFLS-ELNLGFNKLSNSIPVSLSNL 312 (576)
Q Consensus 238 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~----~~~~~~~~~~l~~L~-~L~L~~~~~~~~~~~~~~~l 312 (576)
..|++|+.++++.+.+..+.+.+|.++.++..+....... .......+..+..|+ .+.+.....
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~----------- 189 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGK----------- 189 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCC-----------
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCc-----------
Confidence 7777777777777777666666676666555555443211 111112223333333 222221100
Q ss_pred CCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCC-CCCCCCcEEEccCccceeecCccccCCCCCcEEEc
Q 047676 313 TNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNL-RNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDL 391 (576)
Q Consensus 313 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 391 (576)
+............++..+.+.+.-.......+ ..+++|+.+++.++.++.+....|..|++|+.+++
T Consensus 190 ------------l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 190 ------------LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp ------------HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred ------------HHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 00000000011223333333322111000000 12456666666666666666666777777777777
Q ss_pred cCCccccccCcccCCCCCCC-EEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceee
Q 047676 392 SHNNFYGEISSDWGRCPKLD-SLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLI 462 (576)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 462 (576)
.++ +......+|.+|++|+ .+++.+ .+....+.+|.+|++|+.++++++.+....+..|.++++|+.++
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 665 5555556677777777 777766 55545556677777777777776666666666777777777665
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.4e-16 Score=141.81 Aligned_cols=150 Identities=19% Similarity=0.224 Sum_probs=61.6
Q ss_pred CCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEE
Q 047676 96 ISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILY 175 (576)
Q Consensus 96 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 175 (576)
+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344444444444443 223 3444444444444444332 112334444444444444444433333444444444444
Q ss_pred eecccCcccCCccccCCCccceeeccCCc-CCCcCCccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCC
Q 047676 176 LYNNSLSGSIPSEIGNLKFLSRTALSHNK-LSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKL 253 (576)
Q Consensus 176 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 253 (576)
+++|.+++..+..+..+++|+.|++++|. +. .++ .+..+++|+.|++++|.++... .+..+++|+.|++++|++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 44444443333333444444444444443 22 222 2444444444444444444321 344444444444444443
No 119
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.67 E-value=5.4e-15 Score=145.83 Aligned_cols=268 Identities=10% Similarity=-0.002 Sum_probs=186.2
Q ss_pred cCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCC
Q 047676 69 FSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLN 148 (576)
Q Consensus 69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 148 (576)
+..+..++.+.+... +...-..+|.++ +|+.+.+..+ +..+...+|.+ .+|+.+.+.+ .++...+.+|.++++|+
T Consensus 109 ~~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 109 TEILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EEECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EEecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCC
Confidence 334466777777654 333445667775 6888887765 55455566666 3688888875 45545666778888888
Q ss_pred EEEccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCcc
Q 047676 149 NLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNL 228 (576)
Q Consensus 149 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 228 (576)
.+++.++.+..+...+|. +.+|+.+.+..+ ++.....+|..+++|+.+.+..+ +......+|.+ .+|+.+.+. +.
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence 888887777777667776 578888887643 55566677778888888888763 44344455655 678888884 44
Q ss_pred ccccCCccccCCCCCCEEEccCCCCc-----ccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccc
Q 047676 229 LFGLIPSELRNLKSLYFLELGNNKLS-----GPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSN 303 (576)
Q Consensus 229 ~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 303 (576)
++.+...+|..|++|+.+.+.++.+. .+....|.++++|+.+.+.+ .+.......|.++.+|+.+.+..+ +..
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 66677777888888888888776554 45667788888888888874 355566667788888888888554 555
Q ss_pred cCCccccCCCCCcEEEcccCcccccCchhcccCC-CCcEEEccCCcc
Q 047676 304 SIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLV-KLTKLLLGNNQF 349 (576)
Q Consensus 304 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~ 349 (576)
.....|.++ +|+.+.+.++.........|..++ .++.+.+..+..
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 666778788 888888888777666666676664 677888766543
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=1.1e-16 Score=154.90 Aligned_cols=281 Identities=12% Similarity=0.061 Sum_probs=184.0
Q ss_pred CEEEEEcCCCCcccccCCcccCC-CCCCCEEECCCCCCc--ccCCccccCCCCCcEEECcCCcCCCCCCccccC------
Q 047676 49 RVNSINLTNIGLKGTLHDFSFSS-FPHLAYLDLWSNQLF--GNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGH------ 119 (576)
Q Consensus 49 ~i~~l~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------ 119 (576)
++++|.+++.--...+ . .+.. +++|++|||++|.+. ......+ +.++.+.+..+. ..+..|.+
T Consensus 26 ~l~~L~l~g~i~~~~~-~-~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 26 SITHLTLTGKLNAEDF-R-HLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNGVT 97 (329)
T ss_dssp HCSEEEEEEEECHHHH-H-HHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETTEE
T ss_pred ceeEEEEeccccHHHH-H-HHHHhhccCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhcccccccc
Confidence 5677777653111111 0 2333 788999999999886 2222222 234555555553 33345677
Q ss_pred --CCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeeccc----CcccCCccccCCC
Q 047676 120 --LSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNS----LSGSIPSEIGNLK 193 (576)
Q Consensus 120 --l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~~~~~l~ 193 (576)
+++|+.|++.+ .++.+.+.+|..+++|+.+++.++.+..+.+.+|.++.++..+...... ........|..+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 99999999988 7776777789999999999999998888888899988888877665422 1223344555666
Q ss_pred ccc-eeeccCCcCCCcCCccc----cCCCCCcEEEccCccccccCCccc-cCCCCCCEEEccCCCCcccCCcccCCCCCc
Q 047676 194 FLS-RTALSHNKLSGSIPHSL----GNLSNLVILFLDNNLLFGLIPSEL-RNLKSLYFLELGNNKLSGPIPHFFGNLTNL 267 (576)
Q Consensus 194 ~L~-~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L 267 (576)
.|+ .+.+.... .++..+ ....+++.+.+.+.-.. .....+ ..+++|+.+++++|++..+....|.++++|
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 666 44443221 111111 12345556655543211 111112 237788888888877777777778888888
Q ss_pred cEEEccCCcccccccccccCCCCCC-eEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEc
Q 047676 268 GVLYIYNNLLSGSIPCEIGNLKFLS-ELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLL 344 (576)
Q Consensus 268 ~~L~l~~~~~~~~~~~~~~~l~~L~-~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 344 (576)
+.+++.++ +....+..|.++++|+ .+.+.+ .++......|.+|++|+.+++.++.+....+.+|..+++|+.++.
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 88888776 6556667778888888 888877 666667778888888888888888887777778888888888753
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=1.3e-14 Score=143.23 Aligned_cols=265 Identities=10% Similarity=0.068 Sum_probs=204.2
Q ss_pred CCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccC-CCCCCCCCCcEE
Q 047676 287 NLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPI-PNLRNLTSLVRV 365 (576)
Q Consensus 287 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L 365 (576)
.+..++.+.+.+. ++......|.++ +|+.+.+..+ +......+|..+ +|+.+.+.. .+.... ..|..+++|+.+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3467888888764 444666677775 7999998765 665666778775 699999986 343333 338889999999
Q ss_pred EccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCccc
Q 047676 366 RLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIV 445 (576)
Q Consensus 366 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 445 (576)
++..+.++.+....|. +.+|+.+.+..+ +......+|.+|++|+.+++..+ +......+|.+ .+|+.+.+.+ .+.
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc
Confidence 9998888888877887 689999999854 66677788999999999999864 44455566666 7899999954 455
Q ss_pred ccCcccccCccCCceeeccccccc-----ccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCc
Q 047676 446 GEIPTELGKLSFFIKLILAQNQLS-----GQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREI 520 (576)
Q Consensus 446 ~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 520 (576)
......|.++++|+.+.+.++.+. .....+|.+|++|+.+++.. .+......+|.+|++|+.+.+..+ ++...
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 566778999999999999887654 35566788999999999984 466666788999999999999654 66667
Q ss_pred cccccCCCCCCEEeCCCCcCcccCCccCcCCC-CCceEeCcCCcc
Q 047676 521 PIKLEELIHLSELDLSYNFLGREIPSQICIMQ-SLEKLNLSHNSL 564 (576)
Q Consensus 521 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~l 564 (576)
..+|.++ +|+.+++++|......+..|..++ +++.|++-.+.+
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 7889988 999999999988776667777774 788888877654
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=4.6e-16 Score=134.59 Aligned_cols=139 Identities=23% Similarity=0.171 Sum_probs=103.7
Q ss_pred CCCCCCEEeCCCCccc-ccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCE
Q 047676 430 YSSQLEVLDLSSNHIV-GEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHY 508 (576)
Q Consensus 430 ~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~ 508 (576)
.+++|+.|++++|.+. +..|..+..+++|++|++++|.+... ..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3466777777777765 45566667777777888877777655 56777888888888888887666777777888888
Q ss_pred eeCCCCcCCCCcc-ccccCCCCCCEEeCCCCcCcccCC---ccCcCCCCCceEeCcCCccccccCcc
Q 047676 509 LNLSNNHFSREIP-IKLEELIHLSELDLSYNFLGREIP---SQICIMQSLEKLNLSHNSLSGVIPRC 571 (576)
Q Consensus 509 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~l~~~~p~~ 571 (576)
|++++|++++... ..+..+++|++|++++|++.+..+ ..+..+++|+.|++++|++. .+|+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 8888888865432 567788888888888888866554 36778888888888888886 55554
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=2.3e-16 Score=146.96 Aligned_cols=167 Identities=24% Similarity=0.325 Sum_probs=83.0
Q ss_pred CCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEE
Q 047676 72 FPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLT 151 (576)
Q Consensus 72 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 151 (576)
+.++..++++++.+.+.. .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++ ++. +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEE
Confidence 334455555555554322 3555666666666666655 333 45566666666666666653 222 55666666666
Q ss_pred ccccccCcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCccccc
Q 047676 152 LYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFG 231 (576)
Q Consensus 152 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 231 (576)
+++|.+..+.+ +.. ++|++|++++|.+++. ..+..+++|+.|++++|.+++. + .+..+++|+.|++++|.+..
T Consensus 92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 66665554322 112 5555555555555432 2344444444444444444421 1 24444444444444444443
Q ss_pred cCCccccCCCCCCEEEccCCCC
Q 047676 232 LIPSELRNLKSLYFLELGNNKL 253 (576)
Q Consensus 232 ~~~~~l~~l~~L~~L~l~~~~~ 253 (576)
. ..+..+++|+.|++++|.+
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEE
T ss_pred h--HHhccCCCCCEEeCCCCcc
Confidence 3 2344444444444444444
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=5.2e-15 Score=130.76 Aligned_cols=130 Identities=25% Similarity=0.345 Sum_probs=97.9
Q ss_pred CEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcc-cccCccCCceeecccccccccCCcccccCCCCCEeeCCC
Q 047676 411 DSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPT-ELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSS 489 (576)
Q Consensus 411 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~ 489 (576)
+.++++++.+. .+|..+. +++++|++++|.+.+..+. .+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888776 5555443 3788888888887755543 477778888888888887777677777788888888888
Q ss_pred CcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCccc
Q 047676 490 NRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGRE 543 (576)
Q Consensus 490 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 543 (576)
|.+++..+..|..+++|++|++++|++++..|..+..+++|++|++++|++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 887776666677778888888888888777777777778888888888877654
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=1.1e-16 Score=170.57 Aligned_cols=231 Identities=23% Similarity=0.283 Sum_probs=122.7
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCccceeeeCCCCCEEEEEcCCCCcccccCCcccCCCCCCCEEEC--
Q 047676 3 ESHALLRWKTSLQNHNNGSSLSSWTVNNVTKIGPCAWVGIHCNHGGRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDL-- 80 (576)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l-- 80 (576)
+++++.++.++..-.. +..-..|. ......+.|.+..+.. ++++++++..+++... +. .+.....|+.+.+
T Consensus 133 ~~~~l~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~-~~-~~l~~l~Ls~~~i~~ 205 (727)
T 4b8c_D 133 TKQALMEMADTLTDSK-TAKKQQPT---GDSTPSGTATNSAVST-PLTPKIELFANGKDEA-NQ-ALLQHKKLSQYSIDE 205 (727)
T ss_dssp CCHHHHHHHHHHHHHH-TTC------------------------------------------------------------
T ss_pred chhhhhhhhhhccccc-CcccCCCc---CCCCccccCCCceecC-CccceEEeeCCCCCcc-hh-hHhhcCccCcccccC
Confidence 4566777766654332 22333454 2233346787765544 6799999988877653 22 2222223333322
Q ss_pred ---CCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEcccccc
Q 047676 81 ---WSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCL 157 (576)
Q Consensus 81 ---~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 157 (576)
+.+.+. ..++.+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..+..+++|++|++++|.+
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 223332 44677889999999999999987 67777778999999999999998 8888899999999999999998
Q ss_pred CcccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCC-CcEEEccCccccccCCcc
Q 047676 158 EGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSN-LVILFLDNNLLFGLIPSE 236 (576)
Q Consensus 158 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~ 236 (576)
..+ |..+.++++|++|++++|.++ .+|..|..+++|+.|++++|.+.+..|..+..+.. +..+++++|.++...|.
T Consensus 283 ~~l-p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~- 359 (727)
T 4b8c_D 283 TSL-PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH- 359 (727)
T ss_dssp SSC-CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-
T ss_pred Ccc-ChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-
Confidence 854 778899999999999999887 66777999999999999999988777766644321 22356677766544443
Q ss_pred ccCCCCCCEEEccCC
Q 047676 237 LRNLKSLYFLELGNN 251 (576)
Q Consensus 237 l~~l~~L~~L~l~~~ 251 (576)
.|+.|+++.+
T Consensus 360 -----~l~~l~l~~n 369 (727)
T 4b8c_D 360 -----ERRFIEINTD 369 (727)
T ss_dssp -----C---------
T ss_pred -----ccceeEeecc
Confidence 4445555554
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3.8e-15 Score=128.76 Aligned_cols=135 Identities=26% Similarity=0.217 Sum_probs=100.0
Q ss_pred CCCCCCEEEccCCccc-ccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCE
Q 047676 406 RCPKLDSLDFSTNNIT-GNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEH 484 (576)
Q Consensus 406 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 484 (576)
..++|++|++++|.+. +.++..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3467777777777776 45666667777788888877777654 56777788888888888877656666666888888
Q ss_pred eeCCCCcCcccc-chhccCCCCCCEeeCCCCcCCCCcc---ccccCCCCCCEEeCCCCcCcc
Q 047676 485 LDLSSNRLSNSI-PESLGNLVKLHYLNLSNNHFSREIP---IKLEELIHLSELDLSYNFLGR 542 (576)
Q Consensus 485 L~ls~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~ 542 (576)
|++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 888888887542 2567788888888888888875554 467788888888888887743
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=2.1e-15 Score=127.55 Aligned_cols=128 Identities=23% Similarity=0.184 Sum_probs=81.5
Q ss_pred CCCCEEeCCCCccc-ccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEee
Q 047676 432 SQLEVLDLSSNHIV-GEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLN 510 (576)
Q Consensus 432 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ 510 (576)
++|+.|++++|.+. +..|..+..+++|++|++++|.+... ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45555555555554 34444555556666666666655544 4556677777777777777755666666677777777
Q ss_pred CCCCcCCCC-ccccccCCCCCCEEeCCCCcCcccCC---ccCcCCCCCceEeCcC
Q 047676 511 LSNNHFSRE-IPIKLEELIHLSELDLSYNFLGREIP---SQICIMQSLEKLNLSH 561 (576)
Q Consensus 511 l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~ 561 (576)
+++|++++. .+..+..+++|++|++++|++.+..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777777543 23566777777777777777765544 3566677777777653
No 128
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.57 E-value=7e-13 Score=131.49 Aligned_cols=330 Identities=8% Similarity=0.070 Sum_probs=161.1
Q ss_pred ccccCCC-CCcEEEccCccccccCCccccCCCCCCEEEccCCC---CcccCCcccCCCCCccEEEccCCccccccccccc
Q 047676 211 HSLGNLS-NLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNK---LSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIG 286 (576)
Q Consensus 211 ~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 286 (576)
.+|.++. .|+.+.+... ++.+...+|.+|.+|+.+.+..+. +..+...+|..+.+|+.+.+..+ ++......+.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 4455543 4666666543 555555666666666666665432 34444455555555555554433 2223334445
Q ss_pred CCCCCCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEE
Q 047676 287 NLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVR 366 (576)
Q Consensus 287 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 366 (576)
.+.+|+.+.+... +.......|..+..|+.+.+..+ +......+|.. ..|+.+.+...-.......+..+..++...
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTIT 211 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEEE
T ss_pred hhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhccccceec
Confidence 5555555555432 22233444455555555555432 22222233322 344444444332222222233444444443
Q ss_pred ccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccc
Q 047676 367 LNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVG 446 (576)
Q Consensus 367 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 446 (576)
.............+..... .......+.....+..+.+.. .+......+|.+++.|+.+.+.+... .
T Consensus 212 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~-~ 278 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSAN-----------GDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV-S 278 (394)
T ss_dssp ECCSSSCBSSSCEEEECTT-----------SCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC-E
T ss_pred ccccccccccceeeccccc-----------ccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc-e
Confidence 3322211110000000000 000001112233444555432 22223445666777777777765432 2
Q ss_pred cCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccC
Q 047676 447 EIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEE 526 (576)
Q Consensus 447 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 526 (576)
.....|.+++.|+.+.+.. .+......+|.+|.+|+++++..+ ++.....+|.+|.+|+++.+..+ ++.....+|.+
T Consensus 279 I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~ 355 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSN 355 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhC
Confidence 4455677777777777753 344455556777788888887653 44455567788888888888653 55566677888
Q ss_pred CCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCcc
Q 047676 527 LIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSL 564 (576)
Q Consensus 527 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 564 (576)
+++|+.+++.++.... ..+..+.+|+.+.+..+.+
T Consensus 356 C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 356 CTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 8888888888765421 3466677777777765543
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=5.3e-15 Score=125.01 Aligned_cols=129 Identities=25% Similarity=0.236 Sum_probs=86.9
Q ss_pred CCCCCEEEccCCccc-ccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEe
Q 047676 407 CPKLDSLDFSTNNIT-GNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHL 485 (576)
Q Consensus 407 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 485 (576)
.++|+.|++++|.+. +.++..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356666666666665 45555566666677777776666544 456666777777777777665555555567777778
Q ss_pred eCCCCcCccc-cchhccCCCCCCEeeCCCCcCCCCcc---ccccCCCCCCEEeCCC
Q 047676 486 DLSSNRLSNS-IPESLGNLVKLHYLNLSNNHFSREIP---IKLEELIHLSELDLSY 537 (576)
Q Consensus 486 ~ls~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~ 537 (576)
++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8877777753 23567777888888888888765554 4677778888887753
No 130
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.57 E-value=9.9e-13 Score=130.43 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=69.3
Q ss_pred CCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCC
Q 047676 356 LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLE 435 (576)
Q Consensus 356 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 435 (576)
|..+..|+.+.+... ...+....|..++.|+.+.+.. .+.......|.+|.+|+.+++..+ ++.....+|.+|.+|+
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 445555555555432 2234455566666666666653 333344556667777777777543 3334455666777777
Q ss_pred EEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCc
Q 047676 436 VLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNR 491 (576)
Q Consensus 436 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~ 491 (576)
.+.+..+ +......+|.+|++|+.+++.++.... ..+..+.+|+.+.+..+.
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 7777543 444555667777777777777654321 245566677777766544
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=4.7e-14 Score=124.59 Aligned_cols=127 Identities=27% Similarity=0.336 Sum_probs=91.8
Q ss_pred EEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCc-cccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCC
Q 047676 52 SINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPP-QIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSK 130 (576)
Q Consensus 52 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 130 (576)
.++++++++. .+|. .+. +++++|++++|.+.+..+. .|..+++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 12 ~l~~s~~~l~-~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EEECTTSCCS-SCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EEEcCCCCcC-cCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3455555553 4444 222 2788888888888765543 477888888888888888777777788888888888888
Q ss_pred CcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCc
Q 047676 131 NKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLS 182 (576)
Q Consensus 131 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 182 (576)
|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8887666666777788888888887777777777777777777777777665
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=9.3e-18 Score=173.23 Aligned_cols=186 Identities=24% Similarity=0.181 Sum_probs=85.2
Q ss_pred cCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCc-------------CCCCCCcccCCCCCCCEEE-ccccccCc
Q 047676 94 GNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNK-------------LSGSIPLEVGRLSSLNNLT-LYANCLEG 159 (576)
Q Consensus 94 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 159 (576)
..+++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45566666666666654 556666666666666665543 2334455555566666665 33332211
Q ss_pred ccCcccCCCCCCCEEEeecccCcccCCccccCCCccceeeccCCcCCCcCCccccCCCCCcEEEccCccccccCCccccC
Q 047676 160 LIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRN 239 (576)
Q Consensus 160 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 239 (576)
|+.+.+.+|.++...+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ ..|..+..
T Consensus 425 -----------L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 425 -----------LRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp -----------HHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred -----------hhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 1111111222111000 123444444444432 333 444444444444444444 22334444
Q ss_pred CCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccc-cccccCCCCCCeEEccccccc
Q 047676 240 LKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSI-PCEIGNLKFLSELNLGFNKLS 302 (576)
Q Consensus 240 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~ 302 (576)
+++|+.|++++|.++.. + .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.++
T Consensus 485 l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 485 LRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 44444444444444432 2 3444444555555555444333 444444555555555555444
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=4.9e-14 Score=122.86 Aligned_cols=131 Identities=24% Similarity=0.254 Sum_probs=77.0
Q ss_pred CCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCC
Q 047676 410 LDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSS 489 (576)
Q Consensus 410 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~ 489 (576)
.+.++++++++. .+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 456666666665 333222 35677777777766655444556666666666666666554444455666666666666
Q ss_pred CcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCccc
Q 047676 490 NRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGRE 543 (576)
Q Consensus 490 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 543 (576)
|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 666654444555566666666666666544444455566666666666665443
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=1e-13 Score=120.81 Aligned_cols=134 Identities=25% Similarity=0.282 Sum_probs=104.7
Q ss_pred CCCccceeeeCCCCCEEEEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCC
Q 047676 35 GPCAWVGIHCNHGGRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIP 114 (576)
Q Consensus 35 ~~~~~~~~~c~~~~~i~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 114 (576)
..|.|.++.|.. +++. .++. .-.++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+
T Consensus 5 C~C~~~~l~~~~-----------~~l~-~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (177)
T 2o6r_A 5 CSCSGTEIRCNS-----------KGLT-SVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69 (177)
T ss_dssp CEEETTEEECCS-----------SCCS-SCCT---TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CEeCCCEEEecC-----------CCCc-cCCC---CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh
Confidence 347788777654 2332 2222 223689999999999887666778899999999999999886666
Q ss_pred ccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCcc
Q 047676 115 PQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSG 183 (576)
Q Consensus 115 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 183 (576)
..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..+.+..+..+++|++|++++|.+.+
T Consensus 70 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 678889999999999999886666667888999999999998887777777888889988888887753
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=6.5e-14 Score=123.58 Aligned_cols=127 Identities=26% Similarity=0.307 Sum_probs=92.3
Q ss_pred CEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCC
Q 047676 411 DSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSN 490 (576)
Q Consensus 411 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~ 490 (576)
+.++++++++. .+|..+ .++|++|++++|.+. .+|..+.++++|+.|++++|.+....+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56778777776 455443 357888888888776 45567777777888888777777666666777777777777777
Q ss_pred cCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCc
Q 047676 491 RLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLG 541 (576)
Q Consensus 491 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 541 (576)
.+++..+..|..+++|+.|++++|+++...+..|..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777666667777777777777777776555556777777777777777764
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=8.5e-17 Score=166.06 Aligned_cols=106 Identities=33% Similarity=0.355 Sum_probs=51.9
Q ss_pred CceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCC
Q 047676 458 FIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSY 537 (576)
Q Consensus 458 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 537 (576)
|+.|++++|.+.+. +. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++|++|++++
T Consensus 443 L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 44555555544432 22 444555555555555554 334445555555555555555543 33 444555555555555
Q ss_pred CcCcccC-CccCcCCCCCceEeCcCCcccccc
Q 047676 538 NFLGREI-PSQICIMQSLEKLNLSHNSLSGVI 568 (576)
Q Consensus 538 ~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~~ 568 (576)
|.+++.. |..+..+++|+.|++++|++++..
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 5554443 444555555555555555554443
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=1.8e-13 Score=120.64 Aligned_cols=126 Identities=28% Similarity=0.285 Sum_probs=95.7
Q ss_pred EEEcCCCCcccccCCcccCCCCCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCC
Q 047676 52 SINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKN 131 (576)
Q Consensus 52 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 131 (576)
.++++++++. .+|.. + .+++++|++++|.+. .+|.+|..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 14 ~l~~~~~~l~-~ip~~-~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKG-I--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCSC-C--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCC-cCCCC-C--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 3455555555 34432 2 257888888888886 56678888888888888888888777777888888888888888
Q ss_pred cCCCCCCcccCCCCCCCEEEccccccCcccCcccCCCCCCCEEEeecccCc
Q 047676 132 KLSGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLS 182 (576)
Q Consensus 132 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 182 (576)
.++...+..|..+++|++|++++|.+..+.+..|..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 888666667888888888888888888777777778888888888877664
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=5.3e-15 Score=157.64 Aligned_cols=191 Identities=22% Similarity=0.237 Sum_probs=96.3
Q ss_pred CCCcEEEccCccceeecCccccCCCCCcEEEccC-----CccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCC
Q 047676 360 TSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSH-----NNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQL 434 (576)
Q Consensus 360 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 434 (576)
+.+..+.+.++.+.... ........|+.+.+.+ +.+. ..+..+..+++|+.|+|++|.+. .++..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~~-~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEAN-QALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcch-hhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 45666777666655421 1111222222222222 2222 23455667777778888777776 555556677777
Q ss_pred CEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCC
Q 047676 435 EVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNN 514 (576)
Q Consensus 435 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~ 514 (576)
++|+|++|.+. .+|..+.++++|+.|+|++|.+. .++..+..+++|++|++++|.++ .+|..|..+++|+.|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 77777777776 56667777777777777777776 44666777777777777777776 55656777777777777777
Q ss_pred cCCCCccccccCCC-CCCEEeCCCCcCcccCCccCcCCCCCceEeCcCC
Q 047676 515 HFSREIPIKLEELI-HLSELDLSYNFLGREIPSQICIMQSLEKLNLSHN 562 (576)
Q Consensus 515 ~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 562 (576)
++++..|..+.... .+..+++++|.+.+.+|.. |+.|++++|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 77766666554331 1223567777776666653 344555555
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=5.2e-14 Score=122.51 Aligned_cols=104 Identities=22% Similarity=0.189 Sum_probs=52.5
Q ss_pred CCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccc--cccCCCCCCEEe
Q 047676 457 FFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPI--KLEELIHLSELD 534 (576)
Q Consensus 457 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~ 534 (576)
+|+.|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|++++|++. ..+. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 444444444444433 33445555555555555555433333455555555555555553 2332 455555556666
Q ss_pred CCCCcCcccCCc----cCcCCCCCceEeCcCCcc
Q 047676 535 LSYNFLGREIPS----QICIMQSLEKLNLSHNSL 564 (576)
Q Consensus 535 l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l 564 (576)
+++|++.. +|. .+..+++|+.|++++|+.
T Consensus 120 l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 120 ILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred ecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 66555532 233 245555666666655544
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.1e-13 Score=120.39 Aligned_cols=134 Identities=20% Similarity=0.201 Sum_probs=85.9
Q ss_pred cCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCC
Q 047676 404 WGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLE 483 (576)
Q Consensus 404 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 483 (576)
+..+++|+.|++++|++. .++......++|+.|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 345566666666666665 2333233334677777776666543 4566667777777777776655444456777777
Q ss_pred EeeCCCCcCccccch--hccCCCCCCEeeCCCCcCCCCccc----cccCCCCCCEEeCCCCcCcc
Q 047676 484 HLDLSSNRLSNSIPE--SLGNLVKLHYLNLSNNHFSREIPI----KLEELIHLSELDLSYNFLGR 542 (576)
Q Consensus 484 ~L~ls~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~ 542 (576)
+|++++|.+.+ .+. .+..+++|+.|++++|+++. .+. .+..+++|+.|++++|....
T Consensus 92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 77777777763 333 56777778888888887753 333 36777888888888776643
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=1.8e-15 Score=134.61 Aligned_cols=133 Identities=25% Similarity=0.258 Sum_probs=90.7
Q ss_pred cccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCC
Q 047676 427 EIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKL 506 (576)
Q Consensus 427 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L 506 (576)
.+..+++|++|++++|.+.+ .+ .+.++++|+.|++++|.+. ..+..+..+++|++|++++|.+++ ++ .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 66677777777777777664 44 6677777777777777776 334455566777788887777774 33 46667778
Q ss_pred CEeeCCCCcCCCCcc-ccccCCCCCCEEeCCCCcCcccCCcc----------CcCCCCCceEeCcCCcccc
Q 047676 507 HYLNLSNNHFSREIP-IKLEELIHLSELDLSYNFLGREIPSQ----------ICIMQSLEKLNLSHNSLSG 566 (576)
Q Consensus 507 ~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~----------l~~~~~L~~L~l~~~~l~~ 566 (576)
+.|++++|+++...+ ..+..+++|++|++++|++.+..|.. +..+++|+.|+ +++++.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 888888887754332 35677778888888888776554432 66678888775 666653
No 142
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.39 E-value=1.5e-10 Score=114.10 Aligned_cols=316 Identities=8% Similarity=-0.026 Sum_probs=171.4
Q ss_pred ccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCC
Q 047676 211 HSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKF 290 (576)
Q Consensus 211 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 290 (576)
.++....+|+.+.+.. .++.+...+|.+|.+|+.+.+..+ +..+...+|.++ +|+.+.+..+ +.......|.. .+
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 3455667888888864 467777888999999999999754 666777778776 5777776543 33333444544 36
Q ss_pred CCeEEcccccccccCCccccCCCCCcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCc
Q 047676 291 LSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRN 370 (576)
Q Consensus 291 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 370 (576)
|+.+.+..+ +.......|..+ .++.+.+... +.......|..+..++.+.+............. . .
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~--------~---~ 180 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV--------L---Y 180 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTE--------E---E
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccce--------e---c
Confidence 888887654 222344445443 4555554332 333444556667777777665433211100000 0 0
Q ss_pred cceeecCccccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcc
Q 047676 371 YLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPT 450 (576)
Q Consensus 371 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 450 (576)
.........+..+..+..+.+..... ......+..+.+|+.+.+... +.......+..+..|+.+.+..+ +......
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~ 257 (379)
T 4h09_A 181 NKNKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSF 257 (379)
T ss_dssp ETTSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTT
T ss_pred ccccceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcc
Confidence 00001112233344444444443221 123344555666666666433 22233445556666666666543 3334445
Q ss_pred cccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCC
Q 047676 451 ELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHL 530 (576)
Q Consensus 451 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 530 (576)
.|.++.+|+.+.+... +.......|.++++|+.+.+.++.+......+|.+|.+|+.+.+..+ ++.....+|.++.+|
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 5666666666666542 33344445666666666666666555455556666666666666543 444445566666666
Q ss_pred CEEeCCCCcCcccCCccCcCC
Q 047676 531 SELDLSYNFLGREIPSQICIM 551 (576)
Q Consensus 531 ~~L~l~~~~~~~~~~~~l~~~ 551 (576)
+++.+..+ +......+|.++
T Consensus 336 ~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 336 STISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCCCCCTT-CCEECTTTTTTS
T ss_pred CEEEECCc-cCEEchhHhhCC
Confidence 66666543 433444455554
No 143
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.35 E-value=3.9e-10 Score=111.18 Aligned_cols=302 Identities=12% Similarity=0.066 Sum_probs=188.6
Q ss_pred ccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccCCcccccccccccCCCCCCeEEcccccccccCCccccCCCC
Q 047676 235 SELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTN 314 (576)
Q Consensus 235 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~ 314 (576)
.++....+|+.+.+.. .++.+...+|.++.+|+.+.+..+ ++.....+|..+ .|+.+.+..+ +.......|..+ +
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D 114 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence 3455556777777754 355556666777777777776543 333444455544 4555554332 222333333332 4
Q ss_pred CcEEEcccCcccccCchhcccCCCCcEEEccCCcccccCCCCCCCCCCcEEEccCccceeecCccccCCCCCcEEEccCC
Q 047676 315 LVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHN 394 (576)
Q Consensus 315 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 394 (576)
|+.+.+...- ......+|..+ +++.+.+.. .++.+....|..+..++...+...
T Consensus 115 L~~i~lp~~~-~~i~~~~F~~~------------------------~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 115 LDDFEFPGAT-TEIGNYIFYNS------------------------SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp CSEEECCTTC-CEECTTTTTTC------------------------CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTT
T ss_pred cccccCCCcc-ccccccccccc------------------------eeeeeeccc-eeeccccchhcccccccccccccc
Confidence 5555543321 11222222222 333333322 223333444555555555554433
Q ss_pred ccc------------cccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceee
Q 047676 395 NFY------------GEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLI 462 (576)
Q Consensus 395 ~~~------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 462 (576)
... ......+..+.++..+.+...... .....+..+..|+.+.+..+ +.......+.++..|+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~ 246 (379)
T 4h09_A 169 NKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIA 246 (379)
T ss_dssp CSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEE
T ss_pred cceeecccceecccccceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEE
Confidence 211 112234566778888877654433 45566788999999999765 4445567788999999999
Q ss_pred cccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcCcc
Q 047676 463 LAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGR 542 (576)
Q Consensus 463 l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 542 (576)
+..+ +.......+.++.+|+.+.+..+ +.......|.+|++|+.+.+.++.+......+|.++.+|+.+++..+ +..
T Consensus 247 lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~ 323 (379)
T 4h09_A 247 IPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT 323 (379)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE
T ss_pred cCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccE
Confidence 9875 55566678889999999999654 55456678999999999999999898777889999999999999765 556
Q ss_pred cCCccCcCCCCCceEeCcCCccccccCcccc
Q 047676 543 EIPSQICIMQSLEKLNLSHNSLSGVIPRCFE 573 (576)
Q Consensus 543 ~~~~~l~~~~~L~~L~l~~~~l~~~~p~~~~ 573 (576)
....+|.++.+|+++.+..+ ++.+=..+|.
T Consensus 324 I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~ 353 (379)
T 4h09_A 324 IQVYAFKNCKALSTISYPKS-ITLIESGAFE 353 (379)
T ss_dssp ECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred EHHHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence 66678999999999988544 5444445554
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=7.3e-12 Score=107.90 Aligned_cols=105 Identities=24% Similarity=0.250 Sum_probs=53.4
Q ss_pred CCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCC
Q 047676 434 LEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSN 513 (576)
Q Consensus 434 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~ 513 (576)
.+.++++++.+.. +|..+ .++|+.|++++|.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3556666665542 33322 14555555555555544444455555555555555555544444445555555555555
Q ss_pred CcCCCCccccccCCCCCCEEeCCCCcCc
Q 047676 514 NHFSREIPIKLEELIHLSELDLSYNFLG 541 (576)
Q Consensus 514 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 541 (576)
|+++...+..|..+++|++|++++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5554444444555555555555555543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=5.7e-14 Score=137.14 Aligned_cols=184 Identities=18% Similarity=0.128 Sum_probs=125.3
Q ss_pred CCCCcEEEccCCccccccCcc----cC-CCCCCCEEEccCCcccccCCcc-ccCCCCCCEEeCCCCcccccCcccc----
Q 047676 383 YPNLTFIDLSHNNFYGEISSD----WG-RCPKLDSLDFSTNNITGNIPSE-IGYSSQLEVLDLSSNHIVGEIPTEL---- 452 (576)
Q Consensus 383 ~~~L~~L~l~~~~~~~~~~~~----~~-~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l---- 452 (576)
.+.|+.|++++|.++...... +. .+++|++|++++|.++...... ...+++|+.|++++|.+.+.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 468999999999887443222 22 3479999999999887542222 2345689999999998875544443
Q ss_pred -cCccCCceeeccccccccc----CCcccccCCCCCEeeCCCCcCcccc----chhccCCCCCCEeeCCCCcCCCCcc--
Q 047676 453 -GKLSFFIKLILAQNQLSGQ----LSPKLGLLVQLEHLDLSSNRLSNSI----PESLGNLVKLHYLNLSNNHFSREIP-- 521 (576)
Q Consensus 453 -~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~-- 521 (576)
...++|+.|++++|.+.+. +...+..+++|++|++++|.+++.. ...+..+++|++|+|++|.++....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3467899999999988753 2333467888999999999987532 4556777899999999999975433
Q ss_pred --ccccCCCCCCEEeCCCCcCcccCCccCcCC---C--CCceEe--CcCCcccc
Q 047676 522 --IKLEELIHLSELDLSYNFLGREIPSQICIM---Q--SLEKLN--LSHNSLSG 566 (576)
Q Consensus 522 --~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~---~--~L~~L~--l~~~~l~~ 566 (576)
..+...++|++|++++|++.+.....+... . .|+.+. +.++.+..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 334456889999999999876544433332 1 266666 66666643
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=1.3e-14 Score=129.12 Aligned_cols=133 Identities=26% Similarity=0.255 Sum_probs=96.5
Q ss_pred ccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCC
Q 047676 403 DWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQL 482 (576)
Q Consensus 403 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 482 (576)
.+..+++|++|++++|++.+ ++ .+..+++|+.|++++|.+. ..|..+..+++|++|++++|.+.+. ..+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l--~~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH--HHHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC--CccccCCCC
Confidence 56677788888888777764 45 6777788888888888776 4555666677888888888887753 256777888
Q ss_pred CEeeCCCCcCccccc-hhccCCCCCCEeeCCCCcCCCCccc----------cccCCCCCCEEeCCCCcCcc
Q 047676 483 EHLDLSSNRLSNSIP-ESLGNLVKLHYLNLSNNHFSREIPI----------KLEELIHLSELDLSYNFLGR 542 (576)
Q Consensus 483 ~~L~ls~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~----------~~~~l~~L~~L~l~~~~~~~ 542 (576)
++|++++|.+++..+ ..+..+++|++|++++|++.+..|. .+..+++|+.|+ ++++..
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 888888888875432 4677788888888888888655443 267788888886 666643
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=1.4e-11 Score=106.18 Aligned_cols=84 Identities=25% Similarity=0.262 Sum_probs=40.6
Q ss_pred CCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEc
Q 047676 73 PHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTL 152 (576)
Q Consensus 73 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 152 (576)
+++++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 44555555555555444445555555555555555554333334444555555555555444333333444444444444
Q ss_pred cccc
Q 047676 153 YANC 156 (576)
Q Consensus 153 ~~~~ 156 (576)
++|.
T Consensus 110 ~~N~ 113 (170)
T 3g39_A 110 LNNP 113 (170)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 4443
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=2e-11 Score=105.43 Aligned_cols=84 Identities=25% Similarity=0.240 Sum_probs=39.5
Q ss_pred CCCCEEECCCCCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccCCCCCCCEEEc
Q 047676 73 PHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVGRLSSLNNLTL 152 (576)
Q Consensus 73 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 152 (576)
++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 45555555555555444444555555555555555554333333444455555555555444222222444444444444
Q ss_pred cccc
Q 047676 153 YANC 156 (576)
Q Consensus 153 ~~~~ 156 (576)
++|.
T Consensus 113 ~~N~ 116 (174)
T 2r9u_A 113 YNNP 116 (174)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 4443
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.8e-11 Score=105.80 Aligned_cols=104 Identities=21% Similarity=0.278 Sum_probs=59.7
Q ss_pred CEEeCCCCcccccCcccccCccCCceeecccccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCCC
Q 047676 435 EVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNN 514 (576)
Q Consensus 435 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~~ 514 (576)
+.++++++.+. .+|..+. ++|++|++++|.+....+..+.++++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56666666654 3343332 55666666666665555555556666666666666665444444555666666666666
Q ss_pred cCCCCccccccCCCCCCEEeCCCCcCc
Q 047676 515 HFSREIPIKLEELIHLSELDLSYNFLG 541 (576)
Q Consensus 515 ~~~~~~~~~~~~l~~L~~L~l~~~~~~ 541 (576)
+++...+..|..+++|++|++++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 665444444555666666666666553
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=8.7e-14 Score=135.88 Aligned_cols=183 Identities=17% Similarity=0.105 Sum_probs=116.5
Q ss_pred CCCCcEEEccCccceeecCcccc-----CCCCCcEEEccCCccccccCcc-cCCCCCCCEEEccCCcccccCCccc----
Q 047676 359 LTSLVRVRLNRNYLTGNISESFY-----IYPNLTFIDLSHNNFYGEISSD-WGRCPKLDSLDFSTNNITGNIPSEI---- 428 (576)
Q Consensus 359 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~---- 428 (576)
.+.|+.|++++|.++......+. ..++|+.|++++|.+++..... ...+++|++|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35678888888887654333322 2368888888888876433222 2345678888888888765433322
Q ss_pred -cCCCCCCEEeCCCCcccccC----cccccCccCCceeecccccccccC----CcccccCCCCCEeeCCCCcCccc----
Q 047676 429 -GYSSQLEVLDLSSNHIVGEI----PTELGKLSFFIKLILAQNQLSGQL----SPKLGLLVQLEHLDLSSNRLSNS---- 495 (576)
Q Consensus 429 -~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~ls~~~~~~~---- 495 (576)
...++|++|++++|.+.+.. +..+...++|++|++++|.+.+.. ...+...++|++|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 34678888888888876432 334466788888888888876532 34456677888888888888753
Q ss_pred cchhccCCCCCCEeeCCCCcCCCCccccccCC---C--CCCEEe--CCCCcCc
Q 047676 496 IPESLGNLVKLHYLNLSNNHFSREIPIKLEEL---I--HLSELD--LSYNFLG 541 (576)
Q Consensus 496 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l---~--~L~~L~--l~~~~~~ 541 (576)
+...+..+++|++|+|++|+|+......+..+ . .|+.+. +..+.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 23445566888888888888876555444333 1 155665 5555553
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.02 E-value=9.8e-10 Score=106.90 Aligned_cols=92 Identities=25% Similarity=0.219 Sum_probs=66.4
Q ss_pred cCCcccCCCCCCCEEECCC-CCCcccCCccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCcccC
Q 047676 64 LHDFSFSSFPHLAYLDLWS-NQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHLSYLKTLNLSKNKLSGSIPLEVG 142 (576)
Q Consensus 64 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 142 (576)
+|. +..+++|+.|+|++ |.+.+..+.+|..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..+..+.
T Consensus 24 ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred cCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 555 77777888888885 777766667788888888888888888777777778888888888888877744333444
Q ss_pred CCCCCCEEEccccccC
Q 047676 143 RLSSLNNLTLYANCLE 158 (576)
Q Consensus 143 ~l~~L~~L~l~~~~~~ 158 (576)
.+. |+.|++.+|.+.
T Consensus 102 ~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCC-CCEEECCSSCCC
T ss_pred cCC-ceEEEeeCCCcc
Confidence 443 777777766554
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=1.3e-09 Score=106.03 Aligned_cols=103 Identities=23% Similarity=0.171 Sum_probs=70.9
Q ss_pred EEeCCCC-cccccCcccccCccCCceeeccc-ccccccCCcccccCCCCCEeeCCCCcCccccchhccCCCCCCEeeCCC
Q 047676 436 VLDLSSN-HIVGEIPTELGKLSFFIKLILAQ-NQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSN 513 (576)
Q Consensus 436 ~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~ 513 (576)
.++++++ .+. .+|. +..+++|+.|+|++ |.+....+..|..+++|+.|+|++|.+++..+..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 555 3565 77777777777775 777666656677777777777777777766666777777777777777
Q ss_pred CcCCCCccccccCCCCCCEEeCCCCcCc
Q 047676 514 NHFSREIPIKLEELIHLSELDLSYNFLG 541 (576)
Q Consensus 514 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 541 (576)
|+++...+..+..++ |+.|++.+|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777655555555554 777777777764
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.83 E-value=1.7e-09 Score=104.57 Aligned_cols=156 Identities=19% Similarity=0.235 Sum_probs=80.3
Q ss_pred cccCCCCCcEEEccCCccccccCcccCCCCCCCEEEccCCcccccCCcccc--CCCCCCEEeCCCC--ccccc-----Cc
Q 047676 379 SFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIG--YSSQLEVLDLSSN--HIVGE-----IP 449 (576)
Q Consensus 379 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~~~~-----~~ 449 (576)
.+..+|+|+.|.++++..... . .+ .+++|++|++..|.+.......+. .+|+|+.|+|+.+ ...+. +.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l-~-~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSI-G-KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBC-C-SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCcee-c-cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 345567777777766521111 1 12 267777777777766543322232 5677777776421 11000 01
Q ss_pred ccc--cCccCCceeecccccccccCCccc---ccCCCCCEeeCCCCcCcccc----chhccCCCCCCEeeCCCCcCCCCc
Q 047676 450 TEL--GKLSFFIKLILAQNQLSGQLSPKL---GLLVQLEHLDLSSNRLSNSI----PESLGNLVKLHYLNLSNNHFSREI 520 (576)
Q Consensus 450 ~~l--~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~ls~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~ 520 (576)
..+ ..+++|+.|.+.+|.+.+.....+ ..+++|++|+++.|.+.+.. +..+..+++|+.|++++|.++...
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 112 235667777776666553221111 24566777777766666432 222344566777777766665443
Q ss_pred cccccC-CCCCCEEeCCCCc
Q 047676 521 PIKLEE-LIHLSELDLSYNF 539 (576)
Q Consensus 521 ~~~~~~-l~~L~~L~l~~~~ 539 (576)
...+.. + ..++++++++
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 333332 1 3445666554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=2.3e-09 Score=103.62 Aligned_cols=179 Identities=17% Similarity=0.257 Sum_probs=109.3
Q ss_pred ccCCCCCcEEEccCCccc---------cccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCcc
Q 047676 380 FYIYPNLTFIDLSHNNFY---------GEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPT 450 (576)
Q Consensus 380 ~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 450 (576)
...+++|+.|.+.+.... ..+...+..+|+|+.|.+++|.-. .++. + ..++|+.|++..|.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 445789999988764321 012234567889999999887322 2222 3 378899999988876544333
Q ss_pred ccc--CccCCceeecccc--ccc-c----cCCccc--ccCCCCCEeeCCCCcCccccchhc---cCCCCCCEeeCCCCcC
Q 047676 451 ELG--KLSFFIKLILAQN--QLS-G----QLSPKL--GLLVQLEHLDLSSNRLSNSIPESL---GNLVKLHYLNLSNNHF 516 (576)
Q Consensus 451 ~l~--~l~~L~~L~l~~~--~~~-~----~~~~~~--~~~~~L~~L~ls~~~~~~~~~~~~---~~l~~L~~L~l~~~~~ 516 (576)
.+. .+++|+.|+|..+ ... + .+...+ ..+++|++|++++|.+.+..+..+ +.+++|++|+|+.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 333 6788888887532 111 1 011112 247888888888888765333222 2467888888888888
Q ss_pred CCCcc----ccccCCCCCCEEeCCCCcCcccCCccCcC-CCCCceEeCcCCc
Q 047676 517 SREIP----IKLEELIHLSELDLSYNFLGREIPSQICI-MQSLEKLNLSHNS 563 (576)
Q Consensus 517 ~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~ 563 (576)
.+... ..+..+++|+.|++++|.+++..-..+.. + ..++++++++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 65433 23345688888888888876543333332 2 2456666654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=1.7e-08 Score=87.82 Aligned_cols=90 Identities=19% Similarity=0.218 Sum_probs=40.5
Q ss_pred cccCCCCCCEEeCCCC-cccccC----cccccCccCCceeecccccccccC----CcccccCCCCCEeeCCCCcCccc--
Q 047676 427 EIGYSSQLEVLDLSSN-HIVGEI----PTELGKLSFFIKLILAQNQLSGQL----SPKLGLLVQLEHLDLSSNRLSNS-- 495 (576)
Q Consensus 427 ~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~ls~~~~~~~-- 495 (576)
.+...+.|++|++++| .+.+.. ...+...++|++|++++|.+.+.. ...+...++|++|++++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455666666666666 554321 222333445555555555544321 11222334455555555544432
Q ss_pred --cchhccCCCCCCEeeC--CCCcC
Q 047676 496 --IPESLGNLVKLHYLNL--SNNHF 516 (576)
Q Consensus 496 --~~~~~~~l~~L~~L~l--~~~~~ 516 (576)
+...+...++|++|++ ++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred HHHHHHHHhCCCceEEEecCCCCCC
Confidence 1223333444444444 44444
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.54 E-value=1.1e-08 Score=86.39 Aligned_cols=84 Identities=14% Similarity=0.040 Sum_probs=54.9
Q ss_pred cCCceeecccccccccCCcccccCCCCCEeeCCCCc-CccccchhccCC----CCCCEeeCCCCc-CCCCccccccCCCC
Q 047676 456 SFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNR-LSNSIPESLGNL----VKLHYLNLSNNH-FSREIPIKLEELIH 529 (576)
Q Consensus 456 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~~~~l~~ 529 (576)
..|+.|++++|.+++.....+.++++|++|++++|. +++..-..+..+ ++|++|+|++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 457777777777776666666777777777777775 665433334432 467777777764 66555555666777
Q ss_pred CCEEeCCCCc
Q 047676 530 LSELDLSYNF 539 (576)
Q Consensus 530 L~~L~l~~~~ 539 (576)
|++|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777774
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=3.3e-08 Score=86.07 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=50.3
Q ss_pred cCCCCCCCEEEccCC-ccccc----CCccccCCCCCCEEeCCCCcccccC----cccccCccCCceeeccccccccc---
Q 047676 404 WGRCPKLDSLDFSTN-NITGN----IPSEIGYSSQLEVLDLSSNHIVGEI----PTELGKLSFFIKLILAQNQLSGQ--- 471 (576)
Q Consensus 404 ~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~--- 471 (576)
+..+++|++|++++| .+... +...+...++|++|+|++|.+.+.. ...+...++|++|++++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344555555555555 44422 1223344455555555555544321 12233334555555555555432
Q ss_pred -CCcccccCCCCCEeeC--CCCcCccc----cchhccCCCCCCEeeCCCCcC
Q 047676 472 -LSPKLGLLVQLEHLDL--SSNRLSNS----IPESLGNLVKLHYLNLSNNHF 516 (576)
Q Consensus 472 -~~~~~~~~~~L~~L~l--s~~~~~~~----~~~~~~~l~~L~~L~l~~~~~ 516 (576)
+...+...++|++|++ ++|.+.+. +...+...++|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 1223344455555555 44555432 112233334444444444444
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.49 E-value=2.5e-08 Score=84.15 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=50.5
Q ss_pred CCCCEEeCCCCcccccCcccccCccCCceeeccccc-ccccCCcccccC----CCCCEeeCCCCc-CccccchhccCCCC
Q 047676 432 SQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQ-LSGQLSPKLGLL----VQLEHLDLSSNR-LSNSIPESLGNLVK 505 (576)
Q Consensus 432 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~ls~~~-~~~~~~~~~~~l~~ 505 (576)
-.|+.|++++|.+++.....+.++++|+.|++++|. +++.....+..+ ++|++|++++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356667776666665555556666667777777664 554433444432 356677776665 65544444556666
Q ss_pred CCEeeCCCCc
Q 047676 506 LHYLNLSNNH 515 (576)
Q Consensus 506 L~~L~l~~~~ 515 (576)
|++|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777776664
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.20 E-value=3.3e-07 Score=83.67 Aligned_cols=80 Identities=29% Similarity=0.297 Sum_probs=59.7
Q ss_pred ccCCCCCEeeCCCCcCccc--cchhccCCCCCCEeeCCCCcCCCCccccccCCC--CCCEEeCCCCcCcccCCc------
Q 047676 477 GLLVQLEHLDLSSNRLSNS--IPESLGNLVKLHYLNLSNNHFSREIPIKLEELI--HLSELDLSYNFLGREIPS------ 546 (576)
Q Consensus 477 ~~~~~L~~L~ls~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~------ 546 (576)
..+++|++|++++|.+++. ++..+..+++|+.|+|++|++.+. ..+..+. +|++|++++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4678899999999998863 345566789999999999999654 2334343 899999999998775552
Q ss_pred -cCcCCCCCceEe
Q 047676 547 -QICIMQSLEKLN 558 (576)
Q Consensus 547 -~l~~~~~L~~L~ 558 (576)
.+..+|+|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 356688888864
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=1.2e-06 Score=79.87 Aligned_cols=84 Identities=32% Similarity=0.329 Sum_probs=61.5
Q ss_pred eeCCCCcCc---cccchhccCCCCCCEeeCCCCcCCCC--ccccccCCCCCCEEeCCCCcCcccCCccCcCCC--CCceE
Q 047676 485 LDLSSNRLS---NSIPESLGNLVKLHYLNLSNNHFSRE--IPIKLEELIHLSELDLSYNFLGREIPSQICIMQ--SLEKL 557 (576)
Q Consensus 485 L~ls~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L 557 (576)
++++.|... ........++++|++|+|++|++++. ++..+..+++|+.|+|++|.+.+. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 555666322 12222335689999999999999873 345667899999999999999765 2233333 99999
Q ss_pred eCcCCccccccCc
Q 047676 558 NLSHNSLSGVIPR 570 (576)
Q Consensus 558 ~l~~~~l~~~~p~ 570 (576)
++++|++++.+|+
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999987763
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.31 E-value=8.1e-05 Score=64.03 Aligned_cols=86 Identities=15% Similarity=0.115 Sum_probs=39.4
Q ss_pred ccCCCCCCEEeCCCC-ccccc----CcccccCccCCceeecccccccccCC----cccccCCCCCEeeCCCCcCccc---
Q 047676 428 IGYSSQLEVLDLSSN-HIVGE----IPTELGKLSFFIKLILAQNQLSGQLS----PKLGLLVQLEHLDLSSNRLSNS--- 495 (576)
Q Consensus 428 ~~~~~~L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~ls~~~~~~~--- 495 (576)
+...+.|++|+++++ .+.+. +...+..-+.|+.|+|++|.+.+... ..+..-+.|++|+|+.|.+.+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345566666666664 44322 12233334455555555555543221 1222344555555555555432
Q ss_pred -cchhccCCCCCCEeeCCC
Q 047676 496 -IPESLGNLVKLHYLNLSN 513 (576)
Q Consensus 496 -~~~~~~~l~~L~~L~l~~ 513 (576)
+...+..-+.|++|+|++
T Consensus 117 ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHhhCCceeEEECCC
Confidence 112333334455555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.26 E-value=0.00017 Score=62.03 Aligned_cols=42 Identities=17% Similarity=0.126 Sum_probs=18.4
Q ss_pred ccCCCCCCEEeCCCCcccccCc----ccccCccCCceeeccccccc
Q 047676 428 IGYSSQLEVLDLSSNHIVGEIP----TELGKLSFFIKLILAQNQLS 469 (576)
Q Consensus 428 ~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~ 469 (576)
+...+.|+.|+|++|.+.+... ..+..-+.|+.|+|+.|.+.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3344455555555554433221 22223344555555555444
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.62 E-value=0.0039 Score=49.94 Aligned_cols=36 Identities=25% Similarity=0.179 Sum_probs=17.7
Q ss_pred CCCEeeCCCCcCCCCccccccCCCCCCEEeCCCCcC
Q 047676 505 KLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFL 540 (576)
Q Consensus 505 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 540 (576)
+|+.|+|++|+|+...+..|..+++|+.|+|++|++
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 445555555555444444444455555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.55 E-value=0.0046 Score=49.49 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=45.1
Q ss_pred CEeeCCCCcCC-CCccccccCCCCCCEEeCCCCcCcccCCccCcCCCCCceEeCcCCccc
Q 047676 507 HYLNLSNNHFS-REIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLS 565 (576)
Q Consensus 507 ~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 565 (576)
..++.+++.++ ..+|..+. ++|++|+|++|.++...+..|..+++|+.|+|.+|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777774 25555444 47999999999997776677888999999999999874
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=78.45 E-value=4.7 Score=29.94 Aligned_cols=42 Identities=17% Similarity=0.044 Sum_probs=19.0
Q ss_pred ccCcccCCCCCCCEEEccCCcccccCCccccCCCCCCEEeCCC
Q 047676 399 EISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSS 441 (576)
Q Consensus 399 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 441 (576)
+....|.+|.+|+.+.|... ++......|.+|.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344555555555555432 2223334445555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=74.80 E-value=10 Score=28.11 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=23.6
Q ss_pred ccccCCccccCCCCCCEEEccCCCCcccCCcccCCCCCccEEEccC
Q 047676 229 LFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYN 274 (576)
Q Consensus 229 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 274 (576)
++.+...+|.+|..|+.+.|..+ ++.+...+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44444455555555555555543 3334445555555555555544
Done!