BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047678
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 4 MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAG 63
M++++V + C C +AL K+ GVE+VE+ +E + V G A D K +++A++ G
Sbjct: 1 MLKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTA-DPKALVQAVEEEG 59
Query: 64 KAAE 67
AE
Sbjct: 60 YKAE 63
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 5 VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLK-AIKRAG 63
+ +++ +DC CAS +RA+ K+ GV+ ++ +++ V + ++L A++RAG
Sbjct: 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAG 63
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 5 VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAG 63
+++ VP +DC CA +A+ V++++ +K+T+ AL E+++ AI AG
Sbjct: 2 IQLTVPTMDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTITS-ALGEEQLRTAIASAG 59
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 35.4 bits (80), Expect = 0.010, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 7 VRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKV-LKAIKR 61
VRV + C C + A+ L+GVEEV + + + +R DEK++ + IKR
Sbjct: 6 VRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIR---FDEKRIDFETIKR 58
>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
Length = 71
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 6 EVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITV 45
+++V + C CAS +RAL +LKGV E + + ++TV
Sbjct: 6 QMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTV 45
>pdb|2XMV|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|C Chain C, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|D Chain D, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|E Chain E, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|F Chain F, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMM|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
pdb|2XMM|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
Length = 64
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRA 62
+ +++ VP + CE CA +A+ V++++ +K+T+ AL E+++ AI A
Sbjct: 1 MTIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITS-ALGEEQLRTAIASA 59
Query: 63 G 63
G
Sbjct: 60 G 60
>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
Metallochaperone, Scatx1
pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
Length = 64
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRA 62
+ +++ VP + CE CA +A+ V++++ +K+T+ AL E+++ AI A
Sbjct: 1 MTIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITS-ALGEEQLRTAIASA 59
Query: 63 G 63
G
Sbjct: 60 G 60
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Zn(Ii)-Form
Length = 73
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 8 RVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAG 63
+V +DC CA K + A+ +L GV +V++ +K+ V +V A+++AG
Sbjct: 8 KVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAG 63
>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 5 VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAG 63
+++ VP + CE CA +A+ V++++ +K+T+ AL E+++ AI AG
Sbjct: 2 IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITS-ALGEEQLRTAIASAG 59
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 5 VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQK--ITVRGYALDEKKVLKAIKRA 62
V + VP + C C K+A+ K++GV +V++ E ++ +T +K+ KA A
Sbjct: 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADA 64
Query: 63 G 63
G
Sbjct: 65 G 65
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 8 RVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA 49
RV L C CA+K +R + +++GV E + KITV G A
Sbjct: 8 RVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEA 49
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 33.1 bits (74), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 1 MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLK-AI 59
M + +++ + C CAS +RA+ K+ GV+ ++ +++ V + ++L A+
Sbjct: 1 MAQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAV 60
Query: 60 KRAG 63
+RAG
Sbjct: 61 ERAG 64
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 1 MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLK-AI 59
M + +++ + C CAS +RA+ K+ GV+ ++ +++ V + ++L A+
Sbjct: 1 MAQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAV 60
Query: 60 KRAG 63
+RAG
Sbjct: 61 ERAG 64
>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 6 EVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITV 45
+++V +DC C K + +L +LKGV E + + ++TV
Sbjct: 11 QMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTV 50
>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 6 EVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITV 45
+++V +DC C K + +L +LKGV E + + ++TV
Sbjct: 6 QMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTV 45
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 5 VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQK--ITVRGYALDEKKVLKAIKRA 62
V + VP + C C K+AL K++GV +V++ E ++ +T +K+ KA A
Sbjct: 5 VTLAVPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFDDTKASVQKLTKATADA 64
Query: 63 G 63
G
Sbjct: 65 G 65
>pdb|1Q8L|A Chain A, Second Metal Binding Domain Of The Menkes Atpase
Length = 84
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 10/44 (22%), Positives = 29/44 (65%)
Query: 2 QLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITV 45
+++++++V + C C S + + KL+GV+ +++ ++ Q+ T+
Sbjct: 8 EVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATI 51
>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I)
Form Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
Length = 76
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 10/44 (22%), Positives = 29/44 (65%)
Query: 2 QLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITV 45
+++++++V + C C S + + KL+GV+ +++ ++ Q+ T+
Sbjct: 2 EVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATI 45
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 11 NLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAA 66
+ C+ C +++L + GV++VE+ +E Q + V L ++V ++ G+ A
Sbjct: 26 QMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVH-TTLPSQEVQALLEGTGRQA 80
>pdb|3D59|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D59|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D5E|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3D5E|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3F97|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F97|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F98|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|C Chain C, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F9C|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
pdb|3F9C|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
Length = 383
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 31 VEEVEIEMEVQKITVRGYALDEKKVLKAIK-----RAGKAAEPWPFPGYAHFASFYKYPS 85
+E+++ ++ +KI V G++ V++ + R G A + W FP S P
Sbjct: 209 MEQLKDSIDREKIAVIGHSFGGATVIQTLSEDQRFRCGIALDAWMFPLGDEVYSRIPQPL 268
Query: 86 YIVNHYYDTYGAT 98
+ +N Y Y A
Sbjct: 269 FFINSEYFQYPAN 281
>pdb|2KT2|A Chain A, Structure Of Nmera, The N-Terminal Hma Domain Of Tn501
Mercuric Reductase
pdb|2KT3|A Chain A, Structure Of Hg-Nmera, Hg(Ii) Complex Of The N-Terminal
Domain Of Tn501 Mercuric Reductase
Length = 69
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 4 MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIE 37
M +++ + C+ CA+ K AL K+ GV+ +
Sbjct: 1 MTHLKITGMTCDSCAAHVKEALEKVPGVQSALVS 34
>pdb|3CJK|A Chain A, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 68
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 11 NLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRG-YALDEKKVLKAIKRAGKAA 66
++ C GCA R L KL GV + +I++ +K+ + +++D +L +K+ GK
Sbjct: 8 DMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMD--TLLATLKKTGKTV 61
>pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1
pdb|1FE4|B Chain B, Crystal Structure Of Mercury-Hah1
pdb|1FEE|A Chain A, Crystal Structure Of Copper-Hah1
pdb|1FEE|B Chain B, Crystal Structure Of Copper-Hah1
pdb|1FE0|A Chain A, Crystal Structure Of Cadmium-Hah1
pdb|1FE0|B Chain B, Crystal Structure Of Cadmium-Hah1
pdb|1TL4|A Chain A, Solution Structure Of Cu(i) Hah1
pdb|1TL5|A Chain A, Solution Structure Of Apohah1
pdb|2K1R|B Chain B, The Solution Nmr Structure Of The Complex Between Mnk1
And Hah1 Mediated By Cu(I)
pdb|3IWL|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Monomer)
pdb|3IWX|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
pdb|3IWX|B Chain B, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
Length = 68
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 11 NLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRG-YALDEKKVLKAIKRAGKAA 66
++ C GCA R L KL GV + +I++ +K+ + +++D +L +K+ GK
Sbjct: 9 DMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMD--TLLATLKKTGKTV 62
>pdb|3F96|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
pdb|3F96|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
Length = 383
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 31 VEEVEIEMEVQKITVRGYALDEKKVLKAIK-----RAGKAAEPWPFPGYAHFASFYKYPS 85
+E+++ ++ +KI V G+ V++ + R G A + W FP S P
Sbjct: 209 MEQLKDSIDREKIAVIGHXFGGATVIQTLSEDQRFRCGIALDAWMFPLGDEVYSRIPQPL 268
Query: 86 YIVNHYYDTYGAT 98
+ +N Y Y A
Sbjct: 269 FFINSEYFQYPAN 281
>pdb|2B3P|A Chain A, Crystal Structure Of A Superfolder Green Fluorescent
Protein
Length = 244
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 33 EVEIEMEVQKITVRGY----ALDEKKVLKAIKRAGKAAEPWP-FPGYAHFASFYKYPSYI 87
E++ ++ K +VRG A + K LK I GK PWP F +YP ++
Sbjct: 17 ELDGDVNGHKFSVRGEGEGDATNGKLTLKFICTTGKLPVPWPTLVTTLXVQCFSRYPDHM 76
Query: 88 VNHYY 92
H +
Sbjct: 77 KRHDF 81
>pdb|3ED8|A Chain A, Application Of The Superfolder Yfp Bimolecular
Fluorescence Complementation For Studying
Protein-protein Interactions In Vitro
pdb|3ED8|B Chain B, Application Of The Superfolder Yfp Bimolecular
Fluorescence Complementation For Studying
Protein-protein Interactions In Vitro
pdb|3ED8|C Chain C, Application Of The Superfolder Yfp Bimolecular
Fluorescence Complementation For Studying
Protein-protein Interactions In Vitro
pdb|3ED8|D Chain D, Application Of The Superfolder Yfp Bimolecular
Fluorescence Complementation For Studying
Protein-protein Interactions In Vitro
pdb|3ED8|E Chain E, Application Of The Superfolder Yfp Bimolecular
Fluorescence Complementation For Studying
Protein-protein Interactions In Vitro
Length = 260
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 33 EVEIEMEVQKITVRGYALDE----KKVLKAIKRAGKAAEPWP-FPGYAHFASFYKYPSYI 87
E++ ++ K +VRG + K LK I GK PWP F +YP ++
Sbjct: 17 ELDGDVNGHKFSVRGEGEGDATIGKLTLKFICTTGKLPVPWPTLVTTLXLQCFARYPDHM 76
Query: 88 VNHYY 92
H +
Sbjct: 77 KQHDF 81
>pdb|1RXT|A Chain A, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|B Chain B, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|C Chain C, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|D Chain D, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase
Length = 496
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 77 FASFYKYPSYIVNHYYDTYGATNGAHTFFH 106
F SFY PS I+NH T+ + A++F++
Sbjct: 397 FLSFYTLPSTIMNH--PTHKSLKAAYSFYN 424
>pdb|3IU1|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa
pdb|3IU1|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa
pdb|3IU2|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90096
pdb|3IU2|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90096
pdb|3IWE|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd85646
pdb|3IWE|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd85646
pdb|3JTK|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90055
pdb|3JTK|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90055
Length = 383
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 77 FASFYKYPSYIVNHYYDTYGATNGAHTFFH 106
F SFY PS I+NH T+ + A++F++
Sbjct: 284 FLSFYTLPSTIMNH--PTHKSLKAAYSFYN 311
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis In The Cu(I)loaded State
Length = 80
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 1 MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITV 45
M E + + C CA++ ++ L K++GV + ++ +TV
Sbjct: 1 MTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTV 45
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 6 EVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVR 46
E + + C CA++ ++ L K++GV + ++ +TV
Sbjct: 77 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVE 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,917,155
Number of Sequences: 62578
Number of extensions: 139533
Number of successful extensions: 404
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 37
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)