BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047680
         (78 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EQ6|B Chain B, The Crystal Structure Of Psy3-Csm2 Complex From Budding
           Yeast
          Length = 256

 Score = 27.3 bits (59), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 32  CSLTKKLFPTGFYAAIRASMLCFYSYVVASGGNPPPNKLKSS 73
           C +  K FPT FY  I  +++  +S    SG    P KL  S
Sbjct: 187 CWIITKSFPTDFYNGIENTLVDKWSIKRKSGVTLYPTKLPDS 228


>pdb|4DT1|B Chain B, Crystal Structure Of The Psy3-Csm2 Complex
          Length = 245

 Score = 27.3 bits (59), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 32  CSLTKKLFPTGFYAAIRASMLCFYSYVVASGGNPPPNKLKSS 73
           C +  K FPT FY  I  +++  +S    SG    P KL  S
Sbjct: 176 CWIITKSFPTDFYNGIENTLVDKWSIKRKSGVTLYPTKLPDS 217


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.129    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,743,898
Number of Sequences: 62578
Number of extensions: 44153
Number of successful extensions: 67
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 3
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)