Query 047680
Match_columns 78
No_of_seqs 102 out of 130
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 13:34:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4267 Predicted membrane pro 99.7 3.9E-18 8.6E-23 116.2 5.9 55 13-67 55-110 (110)
2 PF03647 Tmemb_14: Transmembra 99.2 1.6E-11 3.4E-16 80.4 2.7 46 12-57 51-96 (96)
3 COG5548 Small integral membran 95.0 0.032 7E-07 38.0 3.5 36 17-52 59-94 (105)
4 COG5336 Uncharacterized protei 62.3 51 0.0011 23.0 6.5 50 12-64 45-98 (116)
5 PF14019 DUF4235: Protein of u 43.9 69 0.0015 20.0 4.4 25 43-68 10-34 (78)
6 PF02468 PsbN: Photosystem II 32.1 89 0.0019 18.2 3.3 28 45-72 9-36 (43)
7 PRK13183 psbN photosystem II r 27.6 75 0.0016 18.8 2.4 30 43-72 10-39 (46)
8 PF04588 HIG_1_N: Hypoxia indu 26.3 1.2E+02 0.0025 17.6 3.1 24 35-58 3-26 (54)
9 PHA00736 hypothetical protein 26.3 1.6E+02 0.0036 19.0 4.0 30 24-54 22-51 (79)
10 PF07423 DUF1510: Protein of u 25.6 76 0.0017 23.8 2.7 34 33-68 10-43 (217)
11 CHL00020 psbN photosystem II p 25.0 74 0.0016 18.6 2.1 29 44-72 8-36 (43)
12 PTZ00233 variable surface prot 24.9 48 0.001 27.9 1.7 32 38-71 439-470 (509)
13 PLN02356 phosphateglycerate ki 22.6 1.1E+02 0.0024 24.8 3.4 26 39-64 6-31 (423)
14 PF06522 B12D: NADH-ubiquinone 22.4 1.3E+02 0.0029 18.4 3.0 24 37-60 5-28 (73)
15 PRK00052 prolipoprotein diacyl 21.0 3.6E+02 0.0078 20.1 5.9 50 12-61 22-79 (269)
16 PF05283 MGC-24: Multi-glycosy 20.9 1E+02 0.0022 22.7 2.6 20 41-60 165-184 (186)
17 PTZ00100 DnaJ chaperone protei 20.6 82 0.0018 21.5 1.9 22 17-38 8-29 (116)
No 1
>KOG4267 consensus Predicted membrane protein [Function unknown]
Probab=99.74 E-value=3.9e-18 Score=116.16 Aligned_cols=55 Identities=40% Similarity=0.576 Sum_probs=52.8
Q ss_pred HHHHHHH-HHHHHHHHhhhhhhccCccchhHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 047680 13 HLSDLAV-LSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGGNPPP 67 (78)
Q Consensus 13 ~i~~s~~-~S~~L~~vMg~Rf~~t~KlmPAGlva~lS~~M~~fy~y~ll~GGNppp 67 (78)
.++++++ +|++|+.+||+||++|||+||+|+++++|++|.|||.|++++++||||
T Consensus 55 ~~~~~l~~~s~~L~gvmg~R~~~s~K~mPaglva~~s~~m~~~Y~y~~~~~~~~~~ 110 (110)
T KOG4267|consen 55 GSLVALGGTSAALLGVMGQRFYRSRKIMPAGLVAGISLLMTCFYLYVVLRGGNPPP 110 (110)
T ss_pred CchhHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 6778888 899999999999999999999999999999999999999999999987
No 2
>PF03647 Tmemb_14: Transmembrane proteins 14C; InterPro: IPR005349 This family of short membrane proteins is as yet uncharacterised.; GO: 0016020 membrane; PDB: 2LOS_A 2LOO_A 2LOP_A.
Probab=99.17 E-value=1.6e-11 Score=80.36 Aligned_cols=46 Identities=30% Similarity=0.342 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCccchhHHHHHHHHHHHHHHHH
Q 047680 12 SHLSDLAVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSY 57 (78)
Q Consensus 12 ~~i~~s~~~S~~L~~vMg~Rf~~t~KlmPAGlva~lS~~M~~fy~y 57 (78)
....+++++|++|+.+|+.||.+|+|+||+|+++++|++|++||.|
T Consensus 51 ~~~~~~l~~s~~L~~~m~~R~~~t~k~~Pagl~~~~s~~~~~~y~Y 96 (96)
T PF03647_consen 51 WGSELALAISAVLAGVMGYRYIKTRKFMPAGLMALLSGAMLAFYYY 96 (96)
T ss_dssp HCCHHHHHHHHHHHHCCTSSS-SSSSSCCCHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHhcC
Confidence 4566789999999999999999999999999999999999999986
No 3
>COG5548 Small integral membrane protein [Function unknown]
Probab=95.05 E-value=0.032 Score=38.04 Aligned_cols=36 Identities=25% Similarity=0.133 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhhhhhccCccchhHHHHHHHHHHH
Q 047680 17 LAVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASML 52 (78)
Q Consensus 17 s~~~S~~L~~vMg~Rf~~t~KlmPAGlva~lS~~M~ 52 (78)
..+.|++|...-+-|+++|||.+|+++.+.....-.
T Consensus 59 A~~~s~~Ll~~~~~R~~~sRKpvP~~Lt~lgg~~s~ 94 (105)
T COG5548 59 ATVVSAALLVFFALRLVRSRKPVPAGLTTLGGMLSL 94 (105)
T ss_pred HHHHHHHHHHhcchhccccCCCcchHHHHHhhhhhh
Confidence 467899999999999999999999999887654443
No 4
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.35 E-value=51 Score=22.99 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHH----HHHHhhhhhhccCccchhHHHHHHHHHHHHHHHHHHhcCCC
Q 047680 12 SHLSDLAVLSAV----LLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGGN 64 (78)
Q Consensus 12 ~~i~~s~~~S~~----L~~vMg~Rf~~t~KlmPAGlva~lS~~M~~fy~y~ll~GGN 64 (78)
++-+.+=.+|++ +.+..--||..|+ |+|++..+=+.|.+-..-++-+-||
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTs---PwglIv~lllGf~AG~lnv~Rsag~ 98 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTS---PWGLIVFLLLGFGAGVLNVLRSAGK 98 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444445544 4455567999999 9999998888887776666667776
No 5
>PF14019 DUF4235: Protein of unknown function (DUF4235)
Probab=43.87 E-value=69 Score=20.01 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCC
Q 047680 43 FYAAIRASMLCFYSYVVASGGNPPPN 68 (78)
Q Consensus 43 lva~lS~~M~~fy~y~ll~GGNpppk 68 (78)
+.+++-+-.+.-.+|+..+| ++||+
T Consensus 10 ~~ag~~a~k~~~~~W~~~tg-~~~P~ 34 (78)
T PF14019_consen 10 LAAGFLAGKVFEQVWKKVTG-REPPK 34 (78)
T ss_pred HHHHHHHHHHHHHHHHHHcC-CCCCC
Confidence 34444444556678888888 66664
No 6
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=32.13 E-value=89 Score=18.20 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccCc
Q 047680 45 AAIRASMLCFYSYVVASGGNPPPNKLKS 72 (78)
Q Consensus 45 a~lS~~M~~fy~y~ll~GGNpppkk~~~ 72 (78)
..++.+.+..-+|.+-+.=.||.|++++
T Consensus 9 i~i~~~lv~~Tgy~iYtaFGppSk~LrD 36 (43)
T PF02468_consen 9 IFISCLLVSITGYAIYTAFGPPSKELRD 36 (43)
T ss_pred HHHHHHHHHHHhhhhhheeCCCccccCC
Confidence 4456666667777777666688888875
No 7
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=27.56 E-value=75 Score=18.85 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCccCc
Q 047680 43 FYAAIRASMLCFYSYVVASGGNPPPNKLKS 72 (78)
Q Consensus 43 lva~lS~~M~~fy~y~ll~GGNpppkk~~~ 72 (78)
+...++.+.+.+-+|.+-+.=.||.|.+.+
T Consensus 10 ~~i~i~~lL~~~TgyaiYtaFGppSk~LrD 39 (46)
T PRK13183 10 LAITILAILLALTGFGIYTAFGPPSKELDD 39 (46)
T ss_pred HHHHHHHHHHHHhhheeeeccCCcccccCC
Confidence 344566777788888888777788888764
No 8
>PF04588 HIG_1_N: Hypoxia induced protein conserved region; InterPro: IPR007667 The hypoxia induced gene 1 (HIG1) or hypoglycemia/hypoxia inducible mitochondrial protein (HIMP1) is up-regulated by stresses of the microenvironment such as low oxygen or low glucose conditions. HIG1 is a mitochondrial inner membrane protein, which is ubiquitously expressed. It is predicted to be an integral membrane protein consisting of two hydrophobic helices, 21-23 residues in length that might tend to form a hairpin-like loop across the bilayer. HIG1 could be implied in apoptotic or cytoprotective signals. HIG1 is a member of a well conserved eukaryote protein family. The predicted transmembrane helice (TMH) and loop regions represent the most highly conserved regions in these proteins [, ]. The profile we developed covers the predicted TMH and loop regions. This domain is found in proteins thought to be involved in the response to hypoxia []. It is also found in altered inheritance of mitochondria proteins.; PDB: 2LOM_A 2LON_A.
Probab=26.33 E-value=1.2e+02 Score=17.61 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=14.5
Q ss_pred cCccchhHHHHHHHHHHHHHHHHH
Q 047680 35 TKKLFPTGFYAAIRASMLCFYSYV 58 (78)
Q Consensus 35 t~KlmPAGlva~lS~~M~~fy~y~ 58 (78)
...++|.|+.+...++....|.+.
T Consensus 3 e~plv~ig~~~~~~~l~~g~~~~~ 26 (54)
T PF04588_consen 3 ENPLVPIGMLATVGALAYGLYNFR 26 (54)
T ss_dssp S--CHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHHhc
Confidence 355788887777777666554443
No 9
>PHA00736 hypothetical protein
Probab=26.32 E-value=1.6e+02 Score=19.01 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=23.3
Q ss_pred HHHHhhhhhhccCccchhHHHHHHHHHHHHH
Q 047680 24 LLKQNLEPCSLTKKLFPTGFYAAIRASMLCF 54 (78)
Q Consensus 24 L~~vMg~Rf~~t~KlmPAGlva~lS~~M~~f 54 (78)
+..+||..|.-.+|+ |+=++.+.|...+-|
T Consensus 22 il~mmgltykmagki-paii~giastf~lmf 51 (79)
T PHA00736 22 ILAMMGLTYKMAGKI-PAILVGIASTFTLMF 51 (79)
T ss_pred HHHHHhhHHHHhCCc-cHHHHHHHHHHHHHH
Confidence 567899999999988 988888877654433
No 10
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=25.60 E-value=76 Score=23.78 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=22.2
Q ss_pred hccCccchhHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 047680 33 SLTKKLFPTGFYAAIRASMLCFYSYVVASGGNPPPN 68 (78)
Q Consensus 33 ~~t~KlmPAGlva~lS~~M~~fy~y~ll~GGNpppk 68 (78)
.++.+++=- +|++++ +.+.+.+|.|+.|+++.++
T Consensus 10 RK~N~iLNi-aI~IV~-lLIiiva~~lf~~~~~~~~ 43 (217)
T PF07423_consen 10 RKTNKILNI-AIGIVS-LLIIIVAYQLFFGGDDSPA 43 (217)
T ss_pred hhhhhhHHH-HHHHHH-HHHHHHhhhheecCCCchh
Confidence 445555543 455555 5556789999998886665
No 11
>CHL00020 psbN photosystem II protein N
Probab=25.00 E-value=74 Score=18.61 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccCc
Q 047680 44 YAAIRASMLCFYSYVVASGGNPPPNKLKS 72 (78)
Q Consensus 44 va~lS~~M~~fy~y~ll~GGNpppkk~~~ 72 (78)
...++.+.+.+-+|.+-+.=.||.|++++
T Consensus 8 ~i~i~~ll~~~Tgy~iYtaFGppSk~LrD 36 (43)
T CHL00020 8 AIFISGLLVSFTGYALYTAFGQPSKQLRD 36 (43)
T ss_pred HHHHHHHHHHhhheeeeeccCCchhccCC
Confidence 34566777778888888777788888775
No 12
>PTZ00233 variable surface protein Vir18; Provisional
Probab=24.89 E-value=48 Score=27.91 Aligned_cols=32 Identities=16% Similarity=0.058 Sum_probs=23.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCCCCCCccC
Q 047680 38 LFPTGFYAAIRASMLCFYSYVVASGGNPPPNKLK 71 (78)
Q Consensus 38 lmPAGlva~lS~~M~~fy~y~ll~GGNpppkk~~ 71 (78)
=+|-||+.+|++|.=-==.|++|+.=| .||-+
T Consensus 439 SaPmGIvLLLGLLFKyTPLWRvLTKkn--RKk~a 470 (509)
T PTZ00233 439 SMPIGIALLLGLLFKYTPLWRVLTKKN--RKKGA 470 (509)
T ss_pred ccchhHHHHHHHhhccchhHHhhhhcc--ccccc
Confidence 379999999976543334799999888 55543
No 13
>PLN02356 phosphateglycerate kinase
Probab=22.55 E-value=1.1e+02 Score=24.83 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCCC
Q 047680 39 FPTGFYAAIRASMLCFYSYVVASGGN 64 (78)
Q Consensus 39 mPAGlva~lS~~M~~fy~y~ll~GGN 64 (78)
|--.+++..|++|+.-|.+.+...-+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (423)
T PLN02356 6 MTGAVVAAASLLMLLSYSFLLCNSRK 31 (423)
T ss_pred chhHHHHHHHHHHHHHHHHHhhcccc
Confidence 34468999999999999998875443
No 14
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=22.40 E-value=1.3e+02 Score=18.39 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=20.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHh
Q 047680 37 KLFPTGFYAAIRASMLCFYSYVVA 60 (78)
Q Consensus 37 KlmPAGlva~lS~~M~~fy~y~ll 60 (78)
-+.|-.++.++.+.++++|.++.+
T Consensus 5 el~PL~~~vg~a~~~a~~~~~r~l 28 (73)
T PF06522_consen 5 ELYPLFVIVGVAVGGATFYLYRLL 28 (73)
T ss_pred cccchHHHHHHHHHHHHHHHHHHH
Confidence 367888888899999999999966
No 15
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=21.03 E-value=3.6e+02 Score=20.09 Aligned_cols=50 Identities=14% Similarity=0.045 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCc--------cchhHHHHHHHHHHHHHHHHHHhc
Q 047680 12 SHLSDLAVLSAVLLKQNLEPCSLTKK--------LFPTGFYAAIRASMLCFYSYVVAS 61 (78)
Q Consensus 12 ~~i~~s~~~S~~L~~vMg~Rf~~t~K--------lmPAGlva~lS~~M~~fy~y~ll~ 61 (78)
+..-+..+++..++.....|..+.++ +..-.+.++++.+.-+|..|++..
T Consensus 22 ~~Ygl~~~lg~l~a~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~giiGARl~~Vl~~ 79 (269)
T PRK00052 22 RWYGLMYLLGILLAYWLARRRAKRRGLSGWTPDQLDDLLFWAVLGVILGARLGYVLFY 79 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44445555555555555555544443 456677888888899999998875
No 16
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=20.93 E-value=1e+02 Score=22.65 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 047680 41 TGFYAAIRASMLCFYSYVVA 60 (78)
Q Consensus 41 AGlva~lS~~M~~fy~y~ll 60 (78)
=|||-.++++-++|++|+..
T Consensus 165 GGIVL~LGv~aI~ff~~KF~ 184 (186)
T PF05283_consen 165 GGIVLTLGVLAIIFFLYKFC 184 (186)
T ss_pred hHHHHHHHHHHHHHHHhhhc
Confidence 48999999999999999864
No 17
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=20.63 E-value=82 Score=21.51 Aligned_cols=22 Identities=18% Similarity=0.019 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhhhhccCcc
Q 047680 17 LAVLSAVLLKQNLEPCSLTKKL 38 (78)
Q Consensus 17 s~~~S~~L~~vMg~Rf~~t~Kl 38 (78)
-++-.++|++..|.|+....|.
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~ 29 (116)
T PTZ00100 8 LTFGGGVLAVRYGYRYLKNQKI 29 (116)
T ss_pred HHHhHHHHHHHHHHHHHHHHhh
Confidence 3445568999999999984443
Done!