Query 047680
Match_columns 78
No_of_seqs 102 out of 130
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 00:09:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2loo_A Transmembrane protein 1 99.3 1.3E-15 4.5E-20 101.6 0.0 50 11-60 59-108 (108)
2 2los_A Transmembrane protein 1 99.2 6.5E-15 2.2E-19 100.1 0.0 50 12-61 69-118 (121)
3 3tlw_A GLR4197 protein, GLIC; 43.8 27 0.00093 24.8 4.0 46 9-56 265-318 (321)
4 2lx0_A Membrane fusion protein 39.7 38 0.0013 17.7 3.2 21 40-60 9-29 (32)
5 3i5q_B Nucleoporin NUP170; hel 14.6 1.5E+02 0.0052 21.4 3.4 36 25-64 121-156 (252)
6 1v54_D Cytochrome C oxidase su 10.4 3.1E+02 0.011 18.5 3.7 23 41-63 83-105 (147)
7 3a1y_A 50S ribosomal protein P 9.1 1.3E+02 0.0044 17.0 1.2 17 51-67 1-18 (58)
8 1jb0_M Photosystem 1 reaction 9.0 2.5E+02 0.0087 14.4 2.6 17 17-33 14-30 (31)
9 1rdt_E LXXLL motif coactivator 7.8 1.4E+02 0.0046 15.1 0.8 9 58-66 15-23 (26)
10 2y69_D Cytochrome C oxidase su 7.7 4.5E+02 0.015 18.1 3.7 27 41-68 105-131 (169)
No 1
>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A
Probab=99.26 E-value=1.3e-15 Score=101.61 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCccchhHHHHHHHHHHHHHHHHHHh
Q 047680 11 ASHLSDLAVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVA 60 (78)
Q Consensus 11 ~~~i~~s~~~S~~L~~vMg~Rf~~t~KlmPAGlva~lS~~M~~fy~y~ll 60 (78)
.+++++|+++|++|+++|++||.+|+|+||+|+++++|++|++||.|+++
T Consensus 59 ~~~~~l~l~~S~~L~~~m~~R~~~t~K~mPaGl~a~lS~~m~~~y~~~l~ 108 (108)
T 2loo_A 59 KRDVKVSLFTAFFLATIMGVRFKRSKKIMPAGLVAGLSLMMILRLVLLLL 108 (108)
Confidence 34788999999999999999999999999999999999999999999975
No 2
>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}
Probab=99.18 E-value=6.5e-15 Score=100.12 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCccchhHHHHHHHHHHHHHHHHHHhc
Q 047680 12 SHLSDLAVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVAS 61 (78)
Q Consensus 12 ~~i~~s~~~S~~L~~vMg~Rf~~t~KlmPAGlva~lS~~M~~fy~y~ll~ 61 (78)
...++++++|++|+++|++||.+|+|+||+|+++++|++|++||.|++++
T Consensus 69 ~~~~l~l~~S~~L~~~mg~R~~~t~K~mPaGlva~lS~~m~~~~~~~ll~ 118 (121)
T 2los_A 69 RNVWVFLATSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKVGVSMFN 118 (121)
Confidence 35678899999999999999999999999999999999999999999987
No 3
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=43.76 E-value=27 Score=24.79 Aligned_cols=46 Identities=17% Similarity=0.129 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhc--------cCccchhHHHHHHHHHHHHHHH
Q 047680 9 LTASHLSDLAVLSAVLLKQNLEPCSL--------TKKLFPTGFYAAIRASMLCFYS 56 (78)
Q Consensus 9 ~~~~~i~~s~~~S~~L~~vMg~Rf~~--------t~KlmPAGlva~lS~~M~~fy~ 56 (78)
.|+-.+.++++..+++.....++-.. .++++|.+++.+. +..+||.
T Consensus 265 ~~~~~v~~sll~~v~v~~l~~~~~~~~a~~~p~w~r~~fp~~f~~~~--~i~~~~~ 318 (321)
T 3tlw_A 265 MIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLAN--IILAFLF 318 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcCCccccccccChhheeeehHHHHHHH--HHHHhhh
Confidence 35555556666555555444322221 1457787665544 3444443
No 4
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=39.70 E-value=38 Score=17.74 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 047680 40 PTGFYAAIRASMLCFYSYVVA 60 (78)
Q Consensus 40 PAGlva~lS~~M~~fy~y~ll 60 (78)
-+|+++.+..+...|..++.+
T Consensus 9 iaglvalltflafgfwlfkyl 29 (32)
T 2lx0_A 9 IAGLVALLTFLAFGFWLFKYL 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 378899888888888887765
No 5
>3i5q_B Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 2.20A {Saccharomyces cerevisiae}
Probab=14.62 E-value=1.5e+02 Score=21.38 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=26.9
Q ss_pred HHHhhhhhhccCccchhHHHHHHHHHHHHHHHHHHhcCCC
Q 047680 25 LKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGGN 64 (78)
Q Consensus 25 ~~vMg~Rf~~t~KlmPAGlva~lS~~M~~fy~y~ll~GGN 64 (78)
....|+||..+...||-.++. -+++.|++..+..++
T Consensus 121 v~~LG~r~~~se~~FPl~~Lv----~~Le~~~~e~~~~~~ 156 (252)
T 3i5q_B 121 LIKIGKNVQDSEFIFPIFELF----PIVCNFFYETLPKEH 156 (252)
T ss_dssp HHHHHHHHTTCTTTSCHHHHH----HHHHHHHHHHSCGGG
T ss_pred HHHHHHHhCCCCCcccHHHHH----HHHHHHHHHhhcccC
Confidence 345799999999999987754 367888888753333
No 6
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=10.43 E-value=3.1e+02 Score=18.48 Aligned_cols=23 Identities=13% Similarity=-0.181 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCC
Q 047680 41 TGFYAAIRASMLCFYSYVVASGG 63 (78)
Q Consensus 41 AGlva~lS~~M~~fy~y~ll~GG 63 (78)
.|++.++++..+.|+..++...|
T Consensus 83 g~v~~~i~~s~~~f~~~r~~v~~ 105 (147)
T 1v54_D 83 GAAMFFIGFTALLLIWEKHYVYG 105 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHccC
Confidence 56677778778888777777544
No 7
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=9.10 E-value=1.3e+02 Score=17.00 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=10.9
Q ss_pred HHHHHHHHHh-cCCCCCC
Q 047680 51 MLCFYSYVVA-SGGNPPP 67 (78)
Q Consensus 51 M~~fy~y~ll-~GGNppp 67 (78)
|-+-|++-++ .+|+.|-
T Consensus 1 m~~~yAallL~~~g~~~t 18 (58)
T 3a1y_A 1 MEYVYAALLLHSVGKEIN 18 (58)
T ss_dssp CHHHHHHHHHHHTTCCCC
T ss_pred CHHHHHHHHHHhCCCCCC
Confidence 5567787777 5666443
No 8
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=8.99 E-value=2.5e+02 Score=14.43 Aligned_cols=17 Identities=29% Similarity=0.180 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhhhhhh
Q 047680 17 LAVLSAVLLKQNLEPCS 33 (78)
Q Consensus 17 s~~~S~~L~~vMg~Rf~ 33 (78)
.+.+.++|+...|+-.+
T Consensus 14 ~Al~~~iLA~rLg~~LY 30 (31)
T 1jb0_M 14 IALLPAVLAFRLSTELY 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 34466677777776543
No 9
>1rdt_E LXXLL motif coactivator, peroxisome proliferator activated receptor gamma; hormone, polymorphism, hormone/growth factor complex; HET: L79 570; 2.40A {Homo sapiens}
Probab=7.80 E-value=1.4e+02 Score=15.08 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=6.5
Q ss_pred HHhcCCCCC
Q 047680 58 VVASGGNPP 66 (78)
Q Consensus 58 ~ll~GGNpp 66 (78)
.++.+|||+
T Consensus 15 eLLR~g~~~ 23 (26)
T 1rdt_E 15 ELLRGGSGS 23 (26)
T ss_pred HHHcCCCCc
Confidence 467888875
No 10
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=7.72 E-value=4.5e+02 Score=18.12 Aligned_cols=27 Identities=19% Similarity=0.016 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 047680 41 TGFYAAIRASMLCFYSYVVASGGNPPPN 68 (78)
Q Consensus 41 AGlva~lS~~M~~fy~y~ll~GGNpppk 68 (78)
.|++.++++..+.|+..++...+ |+|+
T Consensus 105 ggv~~~i~~s~~~f~~~r~~v~~-p~P~ 131 (169)
T 2y69_D 105 GAAMFFIGFTALLLIWEKHYVYG-PIPH 131 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC-CCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHccC-CCCC
Confidence 56677777777778777777544 3443
Done!