BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047682
(1425 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 40/223 (17%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKISGYP--- 904
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 71
Query: 905 KKQETFARISGYCEQNDI------------HSPNVTVYESLLYSAWLRLPPDVDSETRRM 952
R G Q+++ +P ++V E ++Y+A L D SE R
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 953 FLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 1013 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 176 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 282 DTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHI 341
+T+VG E G+SGGQR+R+ LV L DE ++ LD + I +R + I
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 187
Query: 342 LNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSM 388
G VI ++ T D II++ +G+IV QG + +L +S+
Sbjct: 188 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 40/223 (17%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKISGYP--- 904
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 69
Query: 905 KKQETFARISGYCEQNDI------------HSPNVTVYESLLYSAWLRLPPDVDSETRRM 952
R G Q+++ +P ++V E ++Y+A L D SE R
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 953 FLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 1013 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 174 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 282 DTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHI 341
+T+VG E G+SGGQR+R+ LV L DE ++ LD + I +R + I
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 185
Query: 342 LNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSM 388
G VI ++ T D II++ +G+IV QG + +L +S+
Sbjct: 186 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 40/223 (17%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKISGYP--- 904
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 905 KKQETFARISGYCEQNDI------------HSPNVTVYESLLYSAWLRLPPDVDSETRRM 952
R G Q+++ +P ++V E ++Y+A L D SE R
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 953 FLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 1013 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 282 DTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHI 341
+T+VG E G+SGGQR+R+ LV L DE ++ LD + I +R + I
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 191
Query: 342 LNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSM 388
G VI ++ T D II++ +G+IV QG + +L +S+
Sbjct: 192 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 40/223 (17%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKISGYP--- 904
D V+L+ ++ + + G + ++G +G+GK+TL ++ YI G + I G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 71
Query: 905 KKQETFARISGYCEQNDI------------HSPNVTVYESLLYSAWLRLPPDVDSETRRM 952
R G Q+++ +P ++V E ++Y+A L D SE R
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 953 FLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 1013 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 176 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 282 DTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHI 341
+T+VG E G+SGGQR+R+ LV L DE ++ LD + I +R + I
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 187
Query: 342 LNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSM 388
G VI ++ T D II++ +G+IV QG + +L +S+
Sbjct: 188 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 113/248 (45%), Gaps = 30/248 (12%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFA 911
+N ++ + G L+G SG GKTT + ++AG T G I G+ ++ P K +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
+ Q+ P++TVYE++ + ++ P + + R + E++++ EL L
Sbjct: 87 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 136
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031
P + LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 137 RYP--AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194
Query: 1032 VCTIHQPSIDIFEAFDELFLMKRGGY-------EIYVGPLGRHSSHLISYFEAIPGVN-- 1082
+ ++ D + +M RG E+Y+ P +S ++ F P +N
Sbjct: 195 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP----NSVFVATFIGAPEMNIL 250
Query: 1083 --KIKDGY 1088
+ DGY
Sbjct: 251 EVSVGDGY 258
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 91/254 (35%), Gaps = 44/254 (17%)
Query: 124 LHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXDPSLKLSGRVTY 183
L L R FT + +N +K +LLGP +P+ GR+ +
Sbjct: 14 LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYF 70
Query: 184 NGHNMDEFVPQ-RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDA 242
++ P+ R + + Q MTV E +AF + +
Sbjct: 71 GDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF----------------- 113
Query: 243 NIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT 302
P +ID ++ A Q ++ Y + +SGGQR+RV
Sbjct: 114 ---PKDEIDKRVRWAAELLQIEELLNRYPAQ-------------------LSGGQRQRVA 151
Query: 303 TGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFD 362
+V L MDE + LD+ + ++++ L T I + E + D
Sbjct: 152 VARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTHDQVEAMTMGD 210
Query: 363 DIILISEGQIVFQG 376
I +++ GQ++ G
Sbjct: 211 RIAVMNRGQLLQIG 224
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 40/223 (17%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKISGYP--- 904
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 905 KKQETFARISGYCEQNDI------------HSPNVTVYESLLYSAWLRLPPDVDSETRRM 952
R G Q+++ +P ++V E ++Y+A L D SE R
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 953 FLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
+ ++VG G +GLS QR+R+ IA LV NP I+ D+ TS LD
Sbjct: 135 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDQATSALDYE 179
Query: 1013 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 282 DTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHI 341
+T+VG E G+SGGQR+R+ LV L D+ ++ LD + I +R + I
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI---MRNMHKI 191
Query: 342 LNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSM 388
G VI ++ T D II++ +G+IV QG + +L +S+
Sbjct: 192 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 113/248 (45%), Gaps = 30/248 (12%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQETFA 911
+N ++ + G L+G SG GKTT + ++AG T G I G+ ++ P K +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
+ Q+ P++TVYE++ + ++ P + + R + E++++ EL L
Sbjct: 88 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 137
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031
P + LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 138 RYP--AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 195
Query: 1032 VCTIHQPSIDIFEAFDELFLMKRGGY-------EIYVGPLGRHSSHLISYFEAIPGVN-- 1082
+ ++ D + +M RG E+Y+ P +S ++ F P +N
Sbjct: 196 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP----NSVFVATFIGAPEMNIL 251
Query: 1083 --KIKDGY 1088
+ DGY
Sbjct: 252 EVSVGDGY 259
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 91/254 (35%), Gaps = 44/254 (17%)
Query: 124 LHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXDPSLKLSGRVTY 183
L L R FT + +N +K +LLGP +P+ GR+ +
Sbjct: 15 LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYF 71
Query: 184 NGHNMDEFVPQ-RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDA 242
++ P+ R + + Q MTV E +AF + +
Sbjct: 72 GDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF----------------- 114
Query: 243 NIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT 302
P +ID ++ A Q ++ Y + +SGGQR+RV
Sbjct: 115 ---PKDEIDKRVRWAAELLQIEELLNRYPAQ-------------------LSGGQRQRVA 152
Query: 303 TGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFD 362
+V L MDE + LD+ + ++++ L T I + E + D
Sbjct: 153 VARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTHDQVEAMTMGD 211
Query: 363 DIILISEGQIVFQG 376
I +++ GQ++ G
Sbjct: 212 RIAVMNRGQLLQIG 225
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 132/282 (46%), Gaps = 36/282 (12%)
Query: 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGY------ITGNIKIS 901
K+V L+ V+ G ++G SGAGKTT M ++AG TG + N K+
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 902 GYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELV 961
P+ ++ G Q PN+T +E++ A+ + E R +EE+ +++
Sbjct: 77 VPPEDRKI-----GMVFQTWALYPNLTAFENI---AFPLTNMKMSKEEIRKRVEEVAKIL 128
Query: 962 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVM 1018
+++ L P LS Q++R+ +A LV +PS++ +DEP S LDAR +A ++
Sbjct: 129 DIH---HVLNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183
Query: 1019 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY-------EIYVGPLGRHSSHL 1071
+ V++ + G T++ H P+ DIF D + ++ +G ++Y P+ + L
Sbjct: 184 KEVQSRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASL 240
Query: 1072 ISYFEAIPGVNKIKDGYNPATWMLEVSSSSQELALGVDFTDI 1113
I + G +G + VS SS +G+ D+
Sbjct: 241 IGEINELEG-KVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDV 281
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 132/282 (46%), Gaps = 36/282 (12%)
Query: 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGY------ITGNIKIS 901
K+V L+ V+ G ++G SGAGKTT M ++AG TG + N K+
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 902 GYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELV 961
P+ ++ G Q PN+T +E++ A+ + E R +EE+ +++
Sbjct: 77 VPPEDRKI-----GMVFQTWALYPNLTAFENI---AFPLTNMKMSKEEIRKRVEEVAKIL 128
Query: 962 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVM 1018
+++ L P LS Q++R+ +A LV +PS++ +DEP S LDAR +A ++
Sbjct: 129 DIH---HVLNHFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183
Query: 1019 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY-------EIYVGPLGRHSSHL 1071
+ V++ + G T++ H P+ DIF D + ++ +G ++Y P+ + L
Sbjct: 184 KEVQSRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASL 240
Query: 1072 ISYFEAIPGVNKIKDGYNPATWMLEVSSSSQELALGVDFTDI 1113
I + G +G + VS SS +G+ D+
Sbjct: 241 IGEINELEG-KVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDV 281
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISL 350
R +SGGQ++RV LV L +DE + LD+ ++ S R ++ + ++L
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDA----RMRDSARALVKEVQSRLGVTL 194
Query: 351 LQPAPETYDLF---DDIILISEGQIVFQGPRE 379
L + + D+F D + ++ +G++V G E
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPE 226
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 28/213 (13%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFAR 912
L G++ + G +TA++G +G GK+TL G + + G I + K Y +K R
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 913 IS-GYCEQN-DIHSPNVTVYESLLYSAW-LRLPPD-----VDSETRRMFLEEIMELVELN 964
S G Q+ D + +VY+ + + A ++LP D VD+ +R +E + +
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD----K 139
Query: 965 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRN 1023
P LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ V
Sbjct: 140 P----------THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189
Query: 1024 TVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1055
+ G T++ H IDI + D +F+MK G
Sbjct: 190 QKELGITIIIATH--DIDIVPLYCDNVFVMKEG 220
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQ 352
+S GQ+KRV +LV L +DE + GLD +I+ L ++ L T +I+
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIA--- 200
Query: 353 PAPETYDL------FDDIILISEGQIVFQGPREHVL---EFFKSMGFECPKRKGVADFLQ 403
T+D+ D++ ++ EG+++ QG + V E + + P+ + + L+
Sbjct: 201 ----THDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILK 256
Query: 404 E 404
E
Sbjct: 257 E 257
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 21/178 (11%)
Query: 841 EMKLQGVLDD--KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITG 896
E+KL+ ++ LN ++ + G AL+G SG+GK+TL+ +AG + T G I
Sbjct: 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62
Query: 897 NIK-ISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPP--DVDSETRRMF 953
+ K ++ P K R G QN P++TVY+++ + LR P ++D + R
Sbjct: 63 DEKDVTELPPKD----RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR--- 115
Query: 954 LEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
E+ +++ ++ L L P LS Q++R+ IA LV P ++ +DEP S LDA
Sbjct: 116 --EVAKMLHIDKL---LNRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 107/270 (39%), Gaps = 52/270 (19%)
Query: 134 FTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXDPSLKLSGRVTYNGHNMDEFVP 193
FT L ++N +K LLGP S P+ SG++ ++ ++ E P
Sbjct: 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPP 72
Query: 194 Q-RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDV 252
+ R + Q+ MTV + +AF +EL + P +ID
Sbjct: 73 KDRNVGLVFQNWALYPHMTVYKNIAFP-------------LELRK-------APREEIDK 112
Query: 253 FMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPAL 312
++ +A K+L +D + +SGGQ++RV LV
Sbjct: 113 KVREVA--------------KMLHIDKLLNRYPWQ-----LSGGQQQRVAIARALVKEPE 153
Query: 313 ALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372
L +DE + LD+ ++ L+++ L G + + E + D I +I EG+I
Sbjct: 154 VLLLDEPLSNLDALLRLEVRAELKRLQKEL-GITTVYVTHDQAEALAMADRIAVIREGEI 212
Query: 373 VFQGPREHVLEFFKSMGFECPKRKGVADFL 402
+ G + V ++K PK K V FL
Sbjct: 213 LQVGTPDEV--YYK------PKYKFVGGFL 234
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 105/223 (47%), Gaps = 40/223 (17%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKISGYP--- 904
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 69
Query: 905 KKQETFARISGYCEQNDI------------HSPNVTVYESLLYSAWLRLPPDVDSETRRM 952
R G Q+++ +P ++V E ++Y+A L D SE R
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 953 FLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 1013 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ ++MR + + + GRTV+ I + + D + +M++G
Sbjct: 174 SEHVIMRNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 213
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 282 DTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHI 341
+T+VG E G+SGGQR+R+ LV L DE ++ LD + I +R + I
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 185
Query: 342 LNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSM 388
G VI ++ T D II++ +G+IV QG + +L +S+
Sbjct: 186 CKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 105/223 (47%), Gaps = 40/223 (17%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKISGYP--- 904
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 905 KKQETFARISGYCEQNDI------------HSPNVTVYESLLYSAWLRLPPDVDSETRRM 952
R G Q+++ +P ++V E ++Y+A L D SE R
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 953 FLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 1013 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ ++MR + + + GRTV+ I + + D + +M++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 219
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 282 DTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHI 341
+T+VG E G+SGGQR+R+ LV L DE ++ LD + I +R + I
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 191
Query: 342 LNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSM 388
G VI ++ T D II++ +G+IV QG + +L +S+
Sbjct: 192 CKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 16/187 (8%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L V+ F G + ++G +G+GKTTL+ +LAG G I + G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA---AGEIFLDGSPADPFLLRKN 82
Query: 914 SGYCEQN-DIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVG 972
GY QN TV E + +S + +D R +++++ELV L G
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFSLEIM---GLDESEMRKRIKKVLELV-------GLSG 132
Query: 973 LPGVS--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
L LS Q++RL IA L + + +DEP S LD + + + + + + G+
Sbjct: 133 LAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG 192
Query: 1031 VVCTIHQ 1037
++ H+
Sbjct: 193 IILVTHE 199
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 99/254 (38%), Gaps = 57/254 (22%)
Query: 136 ILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXDPSLKLSGRVTYNGHNMDEFVPQR 195
+LKDVN + ++ +++G S L +G + +G D F+ ++
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGL----LAAAGEIFLDGSPADPFLLRK 81
Query: 196 TAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFM 254
Y+ Q+ I TV E +AFS G+ E+ +R K
Sbjct: 82 NVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDES-----EMRKRIKK------------- 123
Query: 255 KALATEGQEASVVTDYVIKVLGLD--VCADTMVGDEMLRGISGGQRKRVTTGEMLVGPAL 312
V++++GL AD + +SGGQ++R+ ML
Sbjct: 124 ----------------VLELVGLSGLAAADPL-------NLSGGQKQRLAIASMLARDTR 160
Query: 313 ALFMDEISTGLDSSTT---FQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369
L +DE + LD + FQ++ SL+ G +I L+ E D D I+ IS
Sbjct: 161 FLALDEPVSMLDPPSQREIFQVLESLKN-----EGKGII-LVTHELEYLDDMDFILHISN 214
Query: 370 GQIVFQGPREHVLE 383
G I F G E +E
Sbjct: 215 GTIDFCGSWEEFVE 228
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 17/213 (7%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNIKISGYPKKQETFA 911
+ GVS R G + L+G SG+GKTT++ ++AG R T G + G +++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
R G QN ++TVY+++ + + P + + R + EL+ L
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR------VRELLRFMRLESYAN 140
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 1030
P LS Q++R+ +A L P ++ DEP + +D + + VR D G T
Sbjct: 141 RFP--HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198
Query: 1031 VVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063
V H + E D + ++ G E + P
Sbjct: 199 SVFVTHDQE-EALEVADRVLVLHEGNVEQFGTP 230
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQ 352
+SGGQ++RV L L DE +D+ ++ T +RQ +H G + +
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ-VHDEMGVTSVFVTH 204
Query: 353 PAPETYDLFDDIILISEGQIVFQGPREHVLE 383
E ++ D ++++ EG + G E V E
Sbjct: 205 DQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 12/210 (5%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYI-TGNIKISGYPKKQETFA 911
L V+ + G ++MG SG+GK+T+++++ + T G + NIK + + T
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 912 RIS--GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS 969
R G+ Q P +T E++ + + E RR E +++ EL +
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL----EE 136
Query: 970 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1028
+ LS Q++R+ IA L NP II D+PT LD++ +M+ ++ + G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG 196
Query: 1029 RTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058
+TVV H I++ + + +K G E
Sbjct: 197 KTVVVVTH--DINVARFGERIIYLKDGEVE 224
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 33/221 (14%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKK 906
DD +L +S +P + A G SG GK+T+ +L + T G IT I G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT----IDGQPID 67
Query: 907 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSET---------RRMFL 954
E + G+ Q+ T+ E+L Y L D E R F+
Sbjct: 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYG----LEGDYTDEDLWQVLDLAFARSFV 122
Query: 955 EEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014
E + + +LN + VG GV +S QR+RL IA + NP I+ +DE T+ LD+ +
Sbjct: 123 ENMPD--QLN----TEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE 175
Query: 1015 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
++V + + +++ GRT + H+ S I +A D+++ +++G
Sbjct: 176 SMVQKAL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKG 213
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 282 DTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHI 341
+T VG+ ++ ISGGQR+R+ + L +DE + LDS + + +L +
Sbjct: 130 NTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS---L 185
Query: 342 LNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVL 382
+ G + + D D I I +GQI G ++
Sbjct: 186 MKGRTTLVIAHRLSTIVDA-DKIYFIEKGQITGSGKHNELV 225
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 10/195 (5%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYI-TGNIKISGYPKKQETFA 911
L V+ + G ++MG SG+GK+T+++++ + T G + NIK + + T
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 912 RIS--GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS 969
R G+ Q P +T E++ + + E RR E +++ EL +
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL----EE 136
Query: 970 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1028
+ LS Q++R+ IA L NP II D+PT LD++ +M+ ++ + G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG 196
Query: 1029 RTVVCTIHQPSIDIF 1043
+TVV H ++ F
Sbjct: 197 KTVVVVTHDINVARF 211
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 22/193 (11%)
Query: 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKISGYPKKQ 907
K+ ++GVS + G AL+G SG GKTT + +LAG + T G I ++ ++ P K
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK- 73
Query: 908 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEE---IMELVELN 964
R G QN P++TV+E++ + R + E R + + I L++
Sbjct: 74 ---YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRK 130
Query: 965 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1023
P + LS Q++R+ +A LV P ++ DEP S LDA I+ +++
Sbjct: 131 P-----------TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHL 179
Query: 1024 TVDTGRTVVCTIH 1036
+ G T V H
Sbjct: 180 QQELGITSVYVTH 192
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 58/296 (19%), Positives = 112/296 (37%), Gaps = 51/296 (17%)
Query: 131 KKKFTILKDVNGI---VKPSRLTLLLGPPASXXXXXXXXXXXXXDPSLKLSGRVTYNGHN 187
KK F +K V+G+ VK LLGP P+ SG + ++
Sbjct: 10 KKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVL 66
Query: 188 MDEFVPQ-RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRY--DMLVELSRREKDANI 244
+++ P+ R + Q+ MTV E +AF R + + +VE++R+
Sbjct: 67 VNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARK------ 120
Query: 245 KPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTG 304
+ D ++ D +SGGQ++RV
Sbjct: 121 ----------------------------------LLIDNLL-DRKPTQLSGGQQQRVALA 145
Query: 305 EMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364
LV L DE + LD++ + ++ + L T+V A E + I
Sbjct: 146 RALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRI 204
Query: 365 ILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQQYWVRKEE 420
+ ++G++V G + V + K+M +FL++ + + +Q +++++
Sbjct: 205 AVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNPPTNFLRDFSVSVENKQTILKRDD 260
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 88/214 (41%), Gaps = 12/214 (5%)
Query: 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIKISGYPKKQE 908
L +L G++ R G + ++G SG+GK+T + ++L G I I +
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 909 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ 968
G Q P++TV ++ + P V R + MEL++ L+
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKD 130
Query: 969 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1028
P LS Q +R+ IA L P I+ DEPTS LD V+ ++ + G
Sbjct: 131 KAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 188
Query: 1029 RTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062
T+V H+ E D + M GGY I G
Sbjct: 189 MTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 220
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 293 ISGGQRKRVTTGEML-VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLL 351
+SGGQ +RV L + P + LF DE ++ LD ++++ ++Q+ + G ++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLF-DEPTSALDPEMVGEVLSVMKQLAN--EGMTMVVVT 195
Query: 352 QPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEV 405
++ D ++ + G I+ +G E + F+ P+ + FL +V
Sbjct: 196 HEMGFAREVGDRVLFMDGGYIIEEGKPEDL--------FDRPQHERTKAFLSKV 241
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 110/240 (45%), Gaps = 24/240 (10%)
Query: 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 885
+L F+++ +S +E+++ L G++ + G AL+G SG GK+T + ++
Sbjct: 387 NLEFKNIHFSYPSRKEVQI----------LKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Query: 886 AGRKTGGYITGNIKISGYPKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP 942
++ + G + I G + I G Q + T+ E++ Y
Sbjct: 437 --QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGREDVTM 493
Query: 943 PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1002
+++ + + +++L +LVG G LS Q++R+ IA LV NP I+ +
Sbjct: 494 DEIEKAVKEANAYDF--IMKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLL 550
Query: 1003 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI----DIFEAFDELFLMKRGGYE 1058
DE TS LD + A+V + + GRT + H+ S D+ FD ++++G ++
Sbjct: 551 DEATSALDTESEAVVQAAL-DKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 20/195 (10%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L G+S + G AL+G SG GK+T++ +L + + G++ + G KQ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 914 SGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGL 973
+ E +L+ + +R + EEI+ + + Q + L
Sbjct: 1106 RAQL--------GIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 974 P-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
P G G LS Q++R+ IA LV P I+ +DE TS LD + +V + +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DK 1216
Query: 1025 VDTGRTVVCTIHQPS 1039
GRT + H+ S
Sbjct: 1217 AREGRTCIVIAHRLS 1231
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 89/210 (42%), Gaps = 40/210 (19%)
Query: 120 FLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXDPSLKLSG 179
F N PSRK+ ILK +N VK + L+G DP L G
Sbjct: 390 FKNIHFSYPSRKE-VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP---LDG 445
Query: 180 RVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 239
V+ +G ++ RT I +RE + GV S+ +L + E
Sbjct: 446 MVSIDGQDI------RT----------INVRYLREII-------GVVSQEPVLFATTIAE 482
Query: 240 KDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG--ISGGQ 297
+ D +D KA+ +EA+ D+++K L DT+VG+ RG +SGGQ
Sbjct: 483 NIRYGREDVTMDEIEKAV----KEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQ 531
Query: 298 RKRVTTGEMLVGPALALFMDEISTGLDSST 327
++R+ LV L +DE ++ LD+ +
Sbjct: 532 KQRIAIARALVRNPKILLLDEATSALDTES 561
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 111/279 (39%), Gaps = 57/279 (20%)
Query: 115 NLIEG---FLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXX 171
N++EG F + P+R +L+ ++ VK + L+G
Sbjct: 1025 NMLEGNVQFSGVVFNYPTRPS-IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083
Query: 172 DPSLKLSGRVTYNGHNMDEFVPQ--RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRY 229
DP ++G V +G + + Q R I + + + ++ E +A+ G SR
Sbjct: 1084 DP---MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY-----GDNSRV 1135
Query: 230 DMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289
E+ R K+ANI F+ +L + +T VGD+
Sbjct: 1136 VSYEEIVRAAKEANIHQ------FIDSLPDK--------------------YNTRVGDKG 1169
Query: 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSL------RQIIHILN 343
+ +SGGQ++R+ LV L +DE ++ LD+ + + +L R I I +
Sbjct: 1170 TQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAH 1228
Query: 344 GTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVL 382
+S +Q A D I++I G++ G + +L
Sbjct: 1229 R---LSTIQNA-------DLIVVIQNGKVKEHGTHQQLL 1257
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 110/240 (45%), Gaps = 24/240 (10%)
Query: 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 885
+L F+++ +S +E+++ L G++ + G AL+G SG GK+T + ++
Sbjct: 387 NLEFKNIHFSYPSRKEVQI----------LKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Query: 886 AGRKTGGYITGNIKISGYPKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP 942
++ + G + I G + I G Q + T+ E++ Y
Sbjct: 437 --QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGREDVTM 493
Query: 943 PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1002
+++ + + +++L +LVG G LS Q++R+ IA LV NP I+ +
Sbjct: 494 DEIEKAVKEANAYDF--IMKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLL 550
Query: 1003 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI----DIFEAFDELFLMKRGGYE 1058
DE TS LD + A+V + + GRT + H+ S D+ FD ++++G ++
Sbjct: 551 DEATSALDTESEAVVQAAL-DKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 20/195 (10%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L G+S + G AL+G SG GK+T++ +L + + G++ + G KQ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 914 SGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGL 973
+ E +L+ + +R + EEI+ + + Q + L
Sbjct: 1106 RAQL--------GIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 974 P-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
P G G LS Q++R+ IA LV P I+ +DE TS LD + +V + +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DK 1216
Query: 1025 VDTGRTVVCTIHQPS 1039
GRT + H+ S
Sbjct: 1217 AREGRTCIVIAHRLS 1231
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 89/210 (42%), Gaps = 40/210 (19%)
Query: 120 FLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXDPSLKLSG 179
F N PSRK+ ILK +N VK + L+G DP L G
Sbjct: 390 FKNIHFSYPSRKE-VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP---LDG 445
Query: 180 RVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 239
V+ +G ++ RT I +RE + GV S+ +L + E
Sbjct: 446 MVSIDGQDI------RT----------INVRYLREII-------GVVSQEPVLFATTIAE 482
Query: 240 KDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG--ISGGQ 297
+ D +D KA+ +EA+ D+++K L DT+VG+ RG +SGGQ
Sbjct: 483 NIRYGREDVTMDEIEKAV----KEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQ 531
Query: 298 RKRVTTGEMLVGPALALFMDEISTGLDSST 327
++R+ LV L +DE ++ LD+ +
Sbjct: 532 KQRIAIARALVRNPKILLLDEATSALDTES 561
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 111/279 (39%), Gaps = 57/279 (20%)
Query: 115 NLIEG---FLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXX 171
N++EG F + P+R +L+ ++ VK + L+G
Sbjct: 1025 NMLEGNVQFSGVVFNYPTRPS-IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083
Query: 172 DPSLKLSGRVTYNGHNMDEFVPQ--RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRY 229
DP ++G V +G + + Q R I + + + ++ E +A+ G SR
Sbjct: 1084 DP---MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY-----GDNSRV 1135
Query: 230 DMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289
E+ R K+ANI F+ +L + +T VGD+
Sbjct: 1136 VSYEEIVRAAKEANIHQ------FIDSLPDK--------------------YNTRVGDKG 1169
Query: 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSL------RQIIHILN 343
+ +SGGQ++R+ LV L +DE ++ LD+ + + +L R I I +
Sbjct: 1170 TQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAH 1228
Query: 344 GTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVL 382
+S +Q A D I++I G++ G + +L
Sbjct: 1229 R---LSTIQNA-------DLIVVIQNGKVKEHGTHQQLL 1257
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 15/182 (8%)
Query: 865 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQET----FARISGYCEQN 920
G +TAL+G SG+GK+T++ +L + +G I + G+ +Q ++I ++
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 921 DIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ---SLVGLPGVS 977
+ S ++ E++ Y A P V +E + E + + Q ++VG GV
Sbjct: 428 ILFS--CSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037
LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H+
Sbjct: 484 -LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHR 541
Query: 1038 PS 1039
S
Sbjct: 542 LS 543
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/266 (19%), Positives = 109/266 (40%), Gaps = 43/266 (16%)
Query: 120 FLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXDPSLKLSG 179
F N P+R + I +D + + +T L+GP S DP+ SG
Sbjct: 344 FKNVHFAYPARPE-VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SG 399
Query: 180 RVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELS 236
++ +GH++ + P + +SQ + + ++ E +A+ A
Sbjct: 400 TISLDGHDIRQLNPVWLRSKIGTVSQEPI-LFSCSIAENIAYGA---------------- 442
Query: 237 RREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGG 296
DP A E Q + V + V + +T+VG++ + +SGG
Sbjct: 443 ---------DDPS-----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-LSGG 487
Query: 297 QRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPE 356
Q++R+ L+ L +DE ++ LD+ + + +L + +++G V+ ++
Sbjct: 488 QKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR---LMDGRTVL-VIAHRLS 543
Query: 357 TYDLFDDIILISEGQIVFQGPREHVL 382
T + + ++ +G+I G E +L
Sbjct: 544 TIKNANMVAVLDQGKITEYGKHEELL 569
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 88/214 (41%), Gaps = 12/214 (5%)
Query: 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIKISGYPKKQE 908
L +L G++ R G + ++G SG+GK+T + ++L G I I +
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 909 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ 968
G Q P++TV ++ + P V R + MEL++ L+
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKD 151
Query: 969 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1028
P LS Q +R+ IA L P I+ DEPTS LD V+ ++ + G
Sbjct: 152 KAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209
Query: 1029 RTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062
T+V H+ E D + M GGY I G
Sbjct: 210 MTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 241
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 293 ISGGQRKRVTTGEML-VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLL 351
+SGGQ +RV L + P + LF DE ++ LD ++++ ++Q+ + G ++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLF-DEPTSALDPEMVGEVLSVMKQLAN--EGMTMVVVT 216
Query: 352 QPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEV 405
++ D ++ + G I+ +G E + F+ P+ + FL +V
Sbjct: 217 HEMGFAREVGDRVLFMDGGYIIEEGKPEDL--------FDRPQHERTKAFLSKV 262
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 91/182 (50%), Gaps = 15/182 (8%)
Query: 865 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQET----FARISGYCEQN 920
G +TAL+G SG+GK+T++ +L + +G I + G+ +Q ++I ++
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 921 DIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ---SLVGLPGVS 977
+ S ++ E++ Y A P V +E + E + + Q ++VG GV
Sbjct: 459 ILFS--CSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 514
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037
LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H
Sbjct: 515 -LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHH 572
Query: 1038 PS 1039
S
Sbjct: 573 LS 574
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/266 (19%), Positives = 108/266 (40%), Gaps = 43/266 (16%)
Query: 120 FLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXDPSLKLSG 179
F N P+R + I +D + + +T L+GP S DP+ SG
Sbjct: 375 FKNVHFAYPARPE-VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SG 430
Query: 180 RVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELS 236
++ +GH++ + P + +SQ + + ++ E +A+ A
Sbjct: 431 TISLDGHDIRQLNPVWLRSKIGTVSQEPI-LFSCSIAENIAYGA---------------- 473
Query: 237 RREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGG 296
DP A E Q + V + V + +T+VG++ + +SGG
Sbjct: 474 ---------DDPS-----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-LSGG 518
Query: 297 QRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPE 356
Q++R+ L+ L +DE ++ LD+ + + +L + +++G V+ +
Sbjct: 519 QKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR---LMDGRTVLVIAHHL-S 574
Query: 357 TYDLFDDIILISEGQIVFQGPREHVL 382
T + + ++ +G+I G E +L
Sbjct: 575 TIKNANMVAVLDQGKITEYGKHEELL 600
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 28/203 (13%)
Query: 849 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE 908
D++ +L ++ + G A +G+SG GK+TL++++ + +G I I G+ K
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIKDF 408
Query: 909 TFARIS---GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP 965
+ G +Q++I + TV E++L L P D EE++E ++
Sbjct: 409 LTGSLRNQIGLVQQDNILFSD-TVKENIL----LGRPTATD--------EEVVEAAKMAN 455
Query: 966 LRQSLVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
++ LP G G LS Q++RL+IA + NP I+ +DE TS LD + +I
Sbjct: 456 AHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI 515
Query: 1017 VMRTVRNTVDTGRTVVCTIHQPS 1039
+ + + + RT + H+ S
Sbjct: 516 IQEAL-DVLSKDRTTLIVAHRLS 537
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 274 VLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVT 333
++ L DT VG+ ++ +SGGQ++R++ + + L +DE ++ LD + +
Sbjct: 460 IMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESE----S 514
Query: 334 SLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVL 382
+++ + +L+ ++ T D I++I G IV G ++
Sbjct: 515 IIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 563
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 92/195 (47%), Gaps = 24/195 (12%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK----QET 909
+L G+S + PG AL+G SG GK+T++ +L + + G I I G K + T
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNPEHT 1151
Query: 910 FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS 969
++I+ ++ + + ++ E+++Y L P S +EE L ++
Sbjct: 1152 RSQIAIVSQEPTLF--DCSIAENIIYG----LDP---SSVTMAQVEEAARLANIHNFIAE 1202
Query: 970 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
L VG G LS Q++R+ IA LV NP I+ +DE TS LD + +V +
Sbjct: 1203 LPEGFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL- 1260
Query: 1023 NTVDTGRTVVCTIHQ 1037
+ GRT + H+
Sbjct: 1261 DRAREGRTCIVIAHR 1275
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 8/188 (4%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQET--FA 911
+L G++ G AL+G SG GK+T++ +L + + G I I G + F
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDGVDVRDINLEFL 490
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
R + + N T+ E++ ++ + + E+ ++ L +LV
Sbjct: 491 RKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIK--TLPNGYNTLV 548
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031
G G LS Q++R+ IA LV NP I+ +DE TS LDA + IV + + + GRT
Sbjct: 549 GDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQAL-DKAAKGRTT 606
Query: 1032 VCTIHQPS 1039
+ H+ S
Sbjct: 607 IIIAHRLS 614
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 282 DTMVGDEMLRG--ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSST 327
+T+VGD RG +SGGQ++R+ LV L +DE ++ LD+ +
Sbjct: 545 NTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES 589
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 282 DTMVGDEMLRG--ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSST 327
+T VGD RG +SGGQ++R+ LV L +DE ++ LD+ +
Sbjct: 1208 ETRVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 19/196 (9%)
Query: 865 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNIKISGYPKKQETFARISGYCEQND 921
G +G SG GK+TL+ ++AG +T G G +++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 922 IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981
P+++V E++ + L + + + + ++ E+ L L P LS
Sbjct: 85 ALYPHLSVAENMSFGLKLA------GAKKEVINQRVNQVAEVLQLAHLLDRKP--KALSG 136
Query: 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 1039
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 1040 IDIFEAFDELFLMKRG 1055
++ D++ ++ G
Sbjct: 195 VEAMTLADKIVVLDAG 210
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTA 346
D + +SGGQR+RV G LV +DE + LD++ Q+ + + +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR-LHKRLGRT 186
Query: 347 VISLLQPAPETYDLFDDIILISEGQIVFQG 376
+I + E L D I+++ G++ G
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 19/196 (9%)
Query: 865 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNIKISGYPKKQETFARISGYCEQND 921
G +G SG GK+TL+ ++AG +T G G +++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 922 IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981
P+++V E++ + L + + + + ++ E+ L L P LS
Sbjct: 85 ALYPHLSVAENMSFGLKLA------GAKKEVINQRVNQVAEVLQLAHLLDRKP--KALSG 136
Query: 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 1039
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 1040 IDIFEAFDELFLMKRG 1055
++ D++ ++ G
Sbjct: 195 VEAMTLADKIVVLDAG 210
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTA 346
D + +SGGQR+RV G LV +DE + LD++ Q+ + + +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR-LHKRLGRT 186
Query: 347 VISLLQPAPETYDLFDDIILISEGQIVFQG 376
+I + E L D I+++ G++ G
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 17/200 (8%)
Query: 863 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQ---ETFARISGYC 917
+ G L+G SG GKTT + ++AG + G I K+ P+K R
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 918 EQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977
Q+ P++TVY+++ + LR P R+ + + E+ EL L + L P
Sbjct: 87 FQSYALYPHMTVYDNIAFPLKLRKVP------RQEIDQRVREVAELLGLTELLNRKP--R 138
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTI 1035
LS QR+R+ + +V P + MDEP S LDA+ + MR + G T +
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK-LRVRMRAELKKLQRQLGVTTIYVT 197
Query: 1036 HQPSIDIFEAFDELFLMKRG 1055
H ++ D + +M RG
Sbjct: 198 HD-QVEAMTMGDRIAVMNRG 216
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISL 350
R +SGGQR+RV G +V MDE + LD+ ++ L+++ L G I +
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYV 196
Query: 351 LQPAPETYDLFDDIILISEG 370
E + D I +++ G
Sbjct: 197 THDQVEAMTMGDRIAVMNRG 216
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 17/221 (7%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP---KKQETFA 911
L+ VS + G AL+G SG+GK+T+ ++ + +G+I + G+ K
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-RQSL 970
R QN +H N T+ ++ Y+A + + R ME +E P ++
Sbjct: 417 RHFALVSQN-VHLFNDTIANNIAYAAEGEYTREQIEQAARQ--AHAMEFIENMPQGLDTV 473
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
+G G S LS QR+R+ IA L+ + ++ +DE TS LD + + + + + +T
Sbjct: 474 IGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-DELQKNKT 531
Query: 1031 VVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHL 1071
V+ H+ S E DE+ ++ G EI GRH+ L
Sbjct: 532 VLVIAHRLS--TIEQADEILVVDEG--EII--ERGRHADLL 566
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 282 DTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHI 341
DT++G E +SGGQR+RV L+ A L +DE ++ LD+ + I +L +
Sbjct: 471 DTVIG-ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE---- 525
Query: 342 LNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVL 382
L + ++ T + D+I+++ EG+I+ +G +L
Sbjct: 526 LQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLL 566
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 15/195 (7%)
Query: 865 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGY---PKKQETFARISGYCEQND 921
G AL+G +G+GK+T+ +L G+IKI G + + I G Q+
Sbjct: 46 GTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKIGGKNVNKYNRNSIRSIIGIVPQDT 102
Query: 922 IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR-QSLVGLPGVSGLS 980
I N T+ ++LY +V T+ ++ + +E P + ++VG G+ LS
Sbjct: 103 ILF-NETIKYNILYGKLDATDEEVIKATKSA---QLYDFIEALPKKWDTIVGNKGMK-LS 157
Query: 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1040
+R+R+ IA L+ +P I+ DE TS LD++ + + V + + RT++ H+ S
Sbjct: 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLS- 215
Query: 1041 DIFEAFDELFLMKRG 1055
+ + + L+ +G
Sbjct: 216 -TISSAESIILLNKG 229
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 282 DTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTF---QIVTSLRQI 338
DT+VG++ ++ +SGG+R+R+ L+ + DE ++ LDS T + + V LR+
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK- 203
Query: 339 IHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEF 384
N T +I + T + IIL+++G+IV +G + +L+
Sbjct: 204 ----NRTLII--IAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 35/230 (15%)
Query: 831 DVVYSVDMPQEMKLQGVL----DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 886
D+ S D+ +MK ++ D +LV+ NG + + G + ++G +G GKTT +L
Sbjct: 259 DLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEA---KEGEIIGILGPNGIGKTTFARILV 315
Query: 887 GRKTG--GYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPD 944
G T G +T +I Y K Q F G +Q + N + ++L S+W
Sbjct: 316 GEITADEGSVTPEKQILSY-KPQRIFPNYDGTVQQ---YLENAS-KDALSTSSW------ 364
Query: 945 VDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1004
F EE+ + + L+ L +S V+ LS + ++L IA L + +D+
Sbjct: 365 --------FFEEVTKRLNLHRLLES-----NVNDLSGGELQKLYIAATLAKEADLYVLDQ 411
Query: 1005 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTI-HQPSIDIFEAFDELFLMK 1053
P+S LD IV + ++ + V I H SI + A D + + K
Sbjct: 412 PSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIA-DRIIVFK 460
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 35/244 (14%)
Query: 863 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISG---YCEQ 919
+ + ++G +G GKTT++ +LAG + N K+ K E R G Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG----KDEVLKRFRGKEIYNYF 78
Query: 920 NDIHSPNVTVYESLLY----SAWLR-----LPPDVDSETRRMFLEEIMELVELNPLRQSL 970
+++S + + + Y S +L+ + +D ++ +E+ EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK---DEVKELLNMTNLWNKD 135
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
+ GL +RL +A L+ + D+P+S LD R + + +R + +
Sbjct: 136 ANILSGGGL-----QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-KNKY 189
Query: 1031 VVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEAIPGVNKIKDGYNP 1090
V+ H + + + +L + G +Y GR S + A G+N GY P
Sbjct: 190 VIVVDH--DLIVLDYLTDLIHIIYGESSVY----GRVSKS----YAARVGINNFLKGYLP 239
Query: 1091 ATWM 1094
A M
Sbjct: 240 AENM 243
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 19/196 (9%)
Query: 865 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNIKISGYPKKQETFARISGYCEQND 921
G +G SG GK+TL+ ++AG +T G G +++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 922 IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981
P+++V E++ + L + + + + ++ E+ L L P LS
Sbjct: 85 ALYPHLSVAENMSFGLKLA------GAKKEVINQRVNQVAEVLQLAHLLDRKP--KALSG 136
Query: 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 1039
QR+R+ I LVA PS+ +D+P S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 1040 IDIFEAFDELFLMKRG 1055
++ D++ ++ G
Sbjct: 195 VEAMTLADKIVVLDAG 210
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTA 346
D + +SGGQR+RV G LV +D+ + LD++ Q+ + + +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISR-LHKRLGRT 186
Query: 347 VISLLQPAPETYDLFDDIILISEGQIVFQG 376
+I + E L D I+++ G++ G
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 12/210 (5%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYI-TGNIKISGYPKKQETFA 911
L V+ + G ++ G SG+GK+T ++++ + T G + NIK + + T
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 912 RIS--GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS 969
R G+ Q P +T E++ + E RR E ++ EL +
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAEL----EE 136
Query: 970 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1028
+ LS Q++R+ IA L NP II DEPT LD++ + + ++ + G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDG 196
Query: 1029 RTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058
+TVV H I++ + + +K G E
Sbjct: 197 KTVVVVTH--DINVARFGERIIYLKDGEVE 224
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 13/189 (6%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYITGNIKISGYPKKQETFA 911
+L G+S + + G +++G SG+GK+TL+ +L T G + K Y ++E
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 912 ---RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ 968
R G+ Q P +T E+++ P +++ R +L L EL L
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL-----LSELG-LGD 132
Query: 969 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1028
L P LS +++R+ IA L P ++F DEPT LD+ VM + G
Sbjct: 133 KLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG 190
Query: 1029 RTVVCTIHQ 1037
++V H+
Sbjct: 191 TSIVMVTHE 199
Score = 38.1 bits (87), Expect = 0.040, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 14/128 (10%)
Query: 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG---ISGGQRKRVTTGE 305
++ V M + +EA +Y++ LGL GD++ R +SGG+++RV
Sbjct: 102 NVIVPMLKMGKPKKEAKERGEYLLSELGL--------GDKLSRKPYELSGGEQQRVAIAR 153
Query: 306 MLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365
L + LF DE + LDS+ T +++ + I G I ++ E +L +
Sbjct: 154 ALANEPILLFADEPTGNLDSANTKRVMDIF---LKINEGGTSIVMVTHERELAELTHRTL 210
Query: 366 LISEGQIV 373
+ +G++V
Sbjct: 211 EMKDGKVV 218
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 114/268 (42%), Gaps = 51/268 (19%)
Query: 816 SGMVLPFEPLSLT-FEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVS 874
SG + P L F+DV ++ P +Q +L G++ PG +TAL+G +
Sbjct: 5 SGSLAPLNMKGLVKFQDVSFA--YPNHPNVQ--------VLQGLTFTLYPGKVTALVGPN 54
Query: 875 GAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTV-YE 931
G+GK+T+ +L + TG G + + G P Q + + +H+ V E
Sbjct: 55 GSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ---------YDHHYLHTQVAAVGQE 101
Query: 932 SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLP-------GVSG--LSTE 982
LL+ R TR +EEI + + + G P G +G LS
Sbjct: 102 PLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGG 160
Query: 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSI- 1040
QR+ + +A L+ P ++ +D+ TS LDA V R + + + RTV+ HQ S+
Sbjct: 161 QRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLA 220
Query: 1041 ------------DIFEAFDELFLMKRGG 1056
+ E L LM+RGG
Sbjct: 221 ERAHHILFLKEGSVCEQGTHLQLMERGG 248
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 22/118 (18%)
Query: 282 DTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSL------ 335
DT VG E +SGGQR+ V L+ L +D+ ++ LD+ ++ L
Sbjct: 147 DTEVG-ETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEW 205
Query: 336 --RQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLE---FFKSM 388
R ++ I T +SL + A I+ + EG + QG ++E ++SM
Sbjct: 206 ASRTVLLI---THQLSLAERA-------HHILFLKEGSVCEQGTHLQLMERGGCYRSM 253
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 12/201 (5%)
Query: 848 LDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYI--TGNIKIS 901
++DK +L G+S PG + A+MG +G+GK+TL LAGR+ TGG + G ++
Sbjct: 11 VEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 69
Query: 902 GYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSET--RRMFLEEIME 959
P+ + + Q + P V+ + L +A + ET R F + + E
Sbjct: 70 LSPEDRAGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEE 126
Query: 960 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
+ L + + L+ G S ++KR I V P + +DE SGLD A +V
Sbjct: 127 KIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVAD 186
Query: 1020 TVRNTVDTGRTVVCTIHQPSI 1040
V + D R+ + H I
Sbjct: 187 GVNSLRDGKRSFIIVTHYQRI 207
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 21/159 (13%)
Query: 863 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNI-----KISGYPKKQETFARI 913
+ G L+G SG GKTT + +AG T G YI N+ K P K+ A +
Sbjct: 30 KDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXV 89
Query: 914 SGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGL 973
Q+ P+ TVY+++ + LR P + + R + E + L EL L
Sbjct: 90 F----QSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTEL------LNRK 139
Query: 974 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
P LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 140 P--RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISL 350
R +SGGQR+RV G ++ DE + LD+ + L+++ L G I +
Sbjct: 141 RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQL-GVTTIYV 199
Query: 351 LQPAPETYDLFDDIILISEGQI 372
E D I + ++G++
Sbjct: 200 THDQVEAXTXGDRIAVXNKGEL 221
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 12/201 (5%)
Query: 848 LDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYI--TGNIKIS 901
++DK +L G+S PG + A+MG +G+GK+TL LAGR+ TGG + G ++
Sbjct: 30 VEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 88
Query: 902 GYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSET--RRMFLEEIME 959
P+ + + Q + P V+ + L +A + ET R F + + E
Sbjct: 89 LSPEDRAGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEE 145
Query: 960 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
+ L + + L+ G S ++KR I V P + +DE SGLD A +V
Sbjct: 146 KIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVAD 205
Query: 1020 TVRNTVDTGRTVVCTIHQPSI 1040
V + D R+ + H I
Sbjct: 206 GVNSLRDGKRSFIIVTHYQRI 226
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 32/220 (14%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARIS 914
L+GVS + G +T ++G +G+GK+TL++V+ G G + + A +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELY 80
Query: 915 GYCEQNDIHSPN----VTVYESLL---------------YSAWLRLPPDVDSETRRMFLE 955
Y +P +TV E+LL Y W+ P + + F
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI---PKEEEMVEKAF-- 135
Query: 956 EIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
+I+E ++L+ L G LS Q K + I L+ NP +I MDEP +G+ A
Sbjct: 136 KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 1016 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ V G T + H+ I + D L++M G
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 50.4 bits (119), Expect = 7e-06, Method: Composition-based stats.
Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 12/171 (7%)
Query: 865 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIK-ISGYPKKQETFARISGYCEQND 921
G + L+G +GAGKTT + +AG R G I N + I+ P I+ E
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 922 IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST 981
I P +TVYE+L A+ R D E + LE I L L++ L L G LS
Sbjct: 92 IF-PELTVYENLXXGAYNR----KDKEGIKRDLEWIFSL--FPRLKERLKQLGGT--LSG 142
Query: 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1032
+++ L I L + P ++ DEP+ GL + V ++ G T++
Sbjct: 143 GEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 13/195 (6%)
Query: 865 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCE--QNDI 922
G AL+G SG+GK+T+ ++ + G+I + G+ ++ T A + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 923 HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSG--LS 980
H N TV ++ Y+ + E RM M+ + N + L + G +G LS
Sbjct: 427 HLFNDTVANNIAYARTEEYSREQIEEAARMAYA--MDFI--NKMDNGLDTIIGENGVLLS 482
Query: 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1040
QR+R+ IA L+ + I+ +DE TS LD + + + + + RT + H+ S
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLS- 540
Query: 1041 DIFEAFDELFLMKRG 1055
E DE+ +++ G
Sbjct: 541 -TIEQADEIVVVEDG 554
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 109/265 (41%), Gaps = 44/265 (16%)
Query: 120 FLNCLHILPSRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXDPSLKLSG 179
F N P R+ L+++N + + L+G S D G
Sbjct: 344 FRNVTFTYPGRE--VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EG 398
Query: 180 RVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 237
+ +GH++ E+ R + +VH+ TV +A+ AR + E SR
Sbjct: 399 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY-ARTE----------EYSR 447
Query: 238 REKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQ 297
+ + E + D++ K +D DT++G+ + +SGGQ
Sbjct: 448 EQIE------------------EAARMAYAMDFINK---MDNGLDTIIGENGVL-LSGGQ 485
Query: 298 RKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPET 357
R+R+ L+ + L +DE ++ LD+ + I +L ++ N T+++ + T
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLV--IAHRLST 541
Query: 358 YDLFDDIILISEGQIVFQGPREHVL 382
+ D+I+++ +G IV +G +L
Sbjct: 542 IEQADEIVVVEDGIIVERGTHSELL 566
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 13/195 (6%)
Query: 865 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCE--QNDI 922
G AL+G SG+GK+T+ ++ + G I + G+ ++ T A + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 923 HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSG--LS 980
H N TV ++ Y+ + + E RM M+ + N + L + G +G LS
Sbjct: 427 HLFNDTVANNIAYARTEQYSREQIEEAARMAYA--MDFI--NKMDNGLDTVIGENGVLLS 482
Query: 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1040
QR+R+ IA L+ + I+ +DE TS LD + + + + + RT + H+ S
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLS- 540
Query: 1041 DIFEAFDELFLMKRG 1055
E DE+ +++ G
Sbjct: 541 -TIEKADEIVVVEDG 554
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 39/207 (18%)
Query: 179 GRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELS 236
G + +GH++ E+ R + +VH+ TV +A+ AR + + S
Sbjct: 398 GEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY-ARTE----------QYS 446
Query: 237 RREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGG 296
R + + E + D++ K +D DT++G+ + +SGG
Sbjct: 447 REQIE------------------EAARMAYAMDFINK---MDNGLDTVIGENGVL-LSGG 484
Query: 297 QRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPE 356
QR+R+ L+ + L +DE ++ LD+ + I +L ++ N T+++ +
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLV--IAHRLS 540
Query: 357 TYDLFDDIILISEGQIVFQGPREHVLE 383
T + D+I+++ +G IV +G +LE
Sbjct: 541 TIEKADEIVVVEDGVIVERGTHNDLLE 567
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 32/220 (14%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARIS 914
L+GVS + G +T ++G +G+GK+TL++V+ G G + + A +
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELY 80
Query: 915 GYCEQNDIHSPN----VTVYESLL---------------YSAWLRLPPDVDSETRRMFLE 955
Y +P +TV E+LL Y W+ P + + F
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI---PKEEEMVEKAF-- 135
Query: 956 EIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
+I+E ++L+ L G LS Q K + I L+ NP +I MDEP +G+ A
Sbjct: 136 KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 1016 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ V G T + H+ I + D L++M G
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 92/220 (41%), Gaps = 32/220 (14%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARIS 914
L+GVS + G +T ++G +G+GK+TL++V+ G G + + A +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELY 80
Query: 915 GYCEQNDIHSPN----VTVYESLL---------------YSAWLRLPPDVDSETRRMFLE 955
Y +P +TV E+LL Y W+ P + + F
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI---PKEEEMVEKAF-- 135
Query: 956 EIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
+I+E ++L+ L G LS Q K + I L+ NP +I MD+P +G+ A
Sbjct: 136 KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAH 190
Query: 1016 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+ V G T + H+ I + D L++M G
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 23/159 (14%)
Query: 870 LMGVSGAGKTTLMDVLAG--RKTGGYITGN-IKISGYPKKQETFARISGYCEQNDIHSPN 926
L+G +GAGK+ ++++AG + G + N I+ P ++ R G+ Q+ P+
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFPH 84
Query: 927 VTVYESLLYSAWLRLPPDVDSETRRMFLEE---IMELVELNPLRQSLVGLPGVSGLSTEQ 983
++VY ++ Y LR V+ + R + E I L++ P R LS +
Sbjct: 85 LSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----------LSGGE 131
Query: 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
R+R+ +A LV P ++ +DEP S +D + ++M +R
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQ 352
+SGG+R+RV LV L +DE + +D T ++ LR + + ++ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD-VPILHVTH 185
Query: 353 PAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFL 402
E L D++ ++ G+IV +G + E F + K VA+FL
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKG---KLKELFSA------KNGEVAEFL 226
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 104/232 (44%), Gaps = 39/232 (16%)
Query: 791 IRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQGVLDD 850
+R S + L + E A + + + LP S++FE+V + ++
Sbjct: 307 VRASASAKRVLEVLNEKPAIEEAD-NALALPNVEGSVSFENVEFRY-----------FEN 354
Query: 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV---LAGRKTGGYITGNIKISGYPKKQ 907
+L+GV+ + +PG L A++G +G+GK+TLM++ L + G + + K +
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV-KLK 413
Query: 908 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR 967
+ IS ++ + S T+ E+L W R D EI+E ++ +
Sbjct: 414 DLRGHISAVPQETVLFSG--TIKENL---KWGREDATDD---------EIVEAAKIAQIH 459
Query: 968 QSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
++ LP G S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 460 DFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 41/192 (21%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGY------PKKQE 908
L+ +S G ++G +GAGKT ++++AG +G I + G P+K +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD--SGRILLDGKDVTDLSPEKHD 73
Query: 909 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRL---PPDVDSETRRMFLEEIMELVELNP 965
+ QN P++ V ++L + ++ P V R + +E L++ NP
Sbjct: 74 I-----AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH---LLDRNP 125
Query: 966 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
L LS +++R+ +A LV NP I+ +DEP S LD R T
Sbjct: 126 L-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPR-----------TQ 163
Query: 1026 DTGRTVVCTIHQ 1037
+ R ++ +H+
Sbjct: 164 ENAREMLSVLHK 175
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQ 352
+SGG+++RV LV L +DE + LD T + + ++H N V+ +
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ-ENAREMLSVLHKKNKLTVLHITH 186
Query: 353 PAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFL 402
E + D I ++ +G+++ G E + FE P VA F+
Sbjct: 187 DQTEARIMADRIAVVMDGKLIQVGKPEEI--------FEKPVEGRVASFV 228
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 17/150 (11%)
Query: 870 LMGVSGAGKTTLMDVLAGRKTGGYITGNIKISG-YPKK----QETFARISGYCEQNDIH- 923
L G++GAGKTTL+++L + +G + + G P K ET + G+ + +
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEK 109
Query: 924 -SPNVTVYESLLYSAW--LRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980
V + ++ A+ + + D+D E R ++++LV + Q +G LS
Sbjct: 110 FQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVGXSAKAQQYIGY-----LS 163
Query: 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
T +++R+ IA L P ++ +DEP +GLD
Sbjct: 164 TGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 271 VIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQ 330
++K++G A +G +S G+++RV L G L +DE + GLD
Sbjct: 145 LLKLVGXSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARES 199
Query: 331 IVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVL 382
+++ L + A I + E F I+L+ +GQ + QG E +L
Sbjct: 200 LLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQ 352
+SGGQ++RV+ L L DE ++ LD +++ ++Q+ G ++ +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTH 211
Query: 353 PAPETYDLFDDIILISEGQIVFQGPREHV 381
+ +I + +G+I +G E V
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 89/218 (40%), Gaps = 7/218 (3%)
Query: 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISG---YPKK 906
D +L GV+ G + ALMG +GAGK+TL +LAG G I + G
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 907 QETFARISGYCE-QNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP 965
+ AR + Q + P VT+ L + +L +V F ++ + +EL
Sbjct: 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAE---FWTKVKKALELLD 130
Query: 966 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
+S + G S ++KR I LV P+ +DE SGLD A +V R V
Sbjct: 131 WDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR 190
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063
+ H I + D++ +M G GP
Sbjct: 191 GPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISL 350
G SGG++KR ++LV +DE +GLD + + + G VI+
Sbjct: 142 EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITH 201
Query: 351 LQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRK 396
Q Y D + ++ +G++V G E LE ++ G+E K K
Sbjct: 202 YQRIL-NYIQPDKVHVMMDGRVVATGGPELALE-LEAKGYEWLKEK 245
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 10/172 (5%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIKISGYPKKQETFA 911
LN VS G + ++G SGAGK+TL+ ++L G + +++ + + T A
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
R Q + + + S + LP ++D+ + + EL+ L L
Sbjct: 81 R-----RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD 135
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
P S LS Q++R+ IA L +NP ++ DE TS LD ++ +++
Sbjct: 136 SYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD 185
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQ 352
+SGGQ++RV L L DE ++ LD +TT I+ L+ I L G ++ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLITH 199
Query: 353 PAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQQ 412
+ D + +IS G+++ Q V F PK F+Q +
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKFIQSTLHLDIPE 251
Query: 413 QYWVR-KEEPY 422
Y R + EP+
Sbjct: 252 DYQERLQAEPF 262
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 25/216 (11%)
Query: 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQET 909
+++L G++ RPG +TAL+G +G+GK+T+ +L + TGG + + K + +
Sbjct: 30 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 89
Query: 910 FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS 969
+++ ++ + ++ E++ Y T++ +EEI +
Sbjct: 90 HRQVAAVGQEPQVFGR--SLQENIAYGL-----------TQKPTMEEITAAAVKSGAHSF 136
Query: 970 LVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
+ GLP S LS QR+ + +A L+ P ++ +D+ TS LDA + V +
Sbjct: 137 ISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQL 196
Query: 1021 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056
+ + + V I Q + + E D + ++ G
Sbjct: 197 LYESPERYSRSVLLITQ-HLSLVEQADHILFLEGGA 231
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 274 VLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVT 333
+ GL DT V DE +SGGQR+ V L+ L +D+ ++ LD+++ Q+
Sbjct: 137 ISGLPQGYDTEV-DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ 195
Query: 334 SL-----RQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLE 383
L R +L T +SL++ A D I+ + G I G + ++E
Sbjct: 196 LLYESPERYSRSVLLITQHLSLVEQA-------DHILFLEGGAIREGGTHQQLME 243
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 112/268 (41%), Gaps = 51/268 (19%)
Query: 816 SGMVLPFEPLSLT-FEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVS 874
SG + P L F+DV ++ P +Q +L G++ PG +TAL+G +
Sbjct: 5 SGSLAPLNMKGLVKFQDVSFA--YPNHPNVQ--------VLQGLTFTLYPGKVTALVGPN 54
Query: 875 GAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTV-YE 931
G+GK+T+ +L + TGG + + G P Q + + +H+ V E
Sbjct: 55 GSGKSTVAALLQNLYQPTGG----KVLLDGEPLVQ---------YDHHYLHTQVAAVGQE 101
Query: 932 SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLP-------GVSG--LSTE 982
LL+ R TR +EEI + + + G P G +G LS
Sbjct: 102 PLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGG 160
Query: 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSI- 1040
QR+ + +A L+ P ++ +D TS LDA V R + + + RTV+ Q S+
Sbjct: 161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLA 220
Query: 1041 ------------DIFEAFDELFLMKRGG 1056
+ E L LM+RGG
Sbjct: 221 ERAHHILFLKEGSVCEQGTHLQLMERGG 248
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 115/256 (44%), Gaps = 30/256 (11%)
Query: 820 LPFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 879
L F+ + FE+V +S +E L VS PG AL+G SGAGK+
Sbjct: 47 LRFQKGRIEFENVHFSYADGRET------------LQDVSFTVMPGQTLALVGPSGAGKS 94
Query: 880 TLMDVLAGRKTGGYITGNIKISGYPKKQETFARIS---GYCEQNDIHSPNVTVYESLLYS 936
T++ +L + +G I+I G Q T A + G Q+ + N T+ +++ Y
Sbjct: 95 TILRLLF--RFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF-NDTIADNIRYG 151
Query: 937 AWLRLPPDVDSETRRMFLEE-IMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 995
+V++ + + + IM E ++ VG G+ LS +++R+ IA ++
Sbjct: 152 RVTAGNDEVEAAAQAAGIHDAIMAFPEGY---RTQVGERGLK-LSGGEKQRVAIARTILK 207
Query: 996 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
P II +DE TS LD + ++ V RT + H+ S + D++ ++K G
Sbjct: 208 APGIILLDEATSALDTSNERAIQASLAK-VCANRTTIVVAHRLSTVV--NADQILVIKDG 264
Query: 1056 GYEIYVGPLGRHSSHL 1071
+ GRH + L
Sbjct: 265 ----CIVERGRHEALL 276
Score = 37.4 bits (85), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 283 TMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHIL 342
T VG+ L+ +SGG+++RV ++ + +DE ++ LD+S I SL ++
Sbjct: 182 TQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV--CA 238
Query: 343 NGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPREHVL 382
N T ++ + + T D I++I +G IV +G E +L
Sbjct: 239 NRTTIVVAHRLS--TVVNADQILVIKDGCIVERGRHEALL 276
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 132/323 (40%), Gaps = 48/323 (14%)
Query: 766 GGTLQLSTCGSSSSHLTQSDESRDNIRRRNSTSQSLSLTEEDIAANQPKRSGMVLPFEPL 825
GG L L + + T SR R N S ++ + +A+ + FE L
Sbjct: 282 GGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAER-------IFEIL 334
Query: 826 SLTFE----DVVYSVDMPQEMKLQGV---LDDKLVLLNGVSGAFRPGVLTALMGVSGAGK 878
L E D V ++ E++ + V D K +L ++ +PG AL+G +G+GK
Sbjct: 335 DLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGK 394
Query: 879 TTLMDVLA---GRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLY 935
TT++++L G + I I K+ + G Q+ I + TV E+L Y
Sbjct: 395 TTIVNLLMRFYDVDRGQILVDGIDIRKI--KRSSLRSSIGIVLQDTILF-STTVKENLKY 451
Query: 936 SAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLP---------GVSGLSTEQRKR 986
P D EEI E +L + LP LS QR+
Sbjct: 452 GN----PGATD--------EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQL 499
Query: 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1046
L I +ANP I+ +DE TS +D + + + ++ G+T + H+ ++ +
Sbjct: 500 LAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAHR--LNTIKNA 556
Query: 1047 DELFLMKRGGYEIYVGPLGRHSS 1069
D + +++ G + +G+H
Sbjct: 557 DLIIVLRDG----EIVEMGKHDE 575
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 131/317 (41%), Gaps = 50/317 (15%)
Query: 69 LLKLKNRVDRVGISLPEIEVRFEHLNVEAEAYVGGRALPTFFNFCANLIEGFLNCLHILP 128
L +L N+ + + ++L E FE L++E E + P + G + ++
Sbjct: 310 LNELSNQFNMIQMALASAERIFEILDLEEE-----KDDPDAVELRE--VRGEIEFKNVWF 362
Query: 129 SRKKKFTILKDVNGIVKPSRLTLLLGPPASXXXXXXXXXXXXXDPSLKLSGRVTYNGHNM 188
S KK +LKD+ +KP + L+GP S D G++ +G ++
Sbjct: 363 SYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDI 419
Query: 189 DEFVPQ--RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKP 246
+ R++ I D + TV+E L + G+ + + E ++
Sbjct: 420 RKIKRSSLRSSIGIVLQDTILFSTTVKENLKYG----NPGATDEEIKEAAKLTHS----- 470
Query: 247 DPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEM 306
D F+K L EG E +V+TD G+++ S GQR+ +
Sbjct: 471 ----DHFIKHLP-EGYE-TVLTDN---------------GEDL----SQGQRQLLAITRA 505
Query: 307 LVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366
+ L +DE ++ +D+ T I ++ +++ T++I + T D II+
Sbjct: 506 FLANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKTSII--IAHRLNTIKNADLIIV 561
Query: 367 ISEGQIVFQGPREHVLE 383
+ +G+IV G + +++
Sbjct: 562 LRDGEIVEMGKHDELIQ 578
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 112/268 (41%), Gaps = 51/268 (19%)
Query: 816 SGMVLPFEPLSLT-FEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVS 874
SG + P L F+DV ++ P +Q +L G++ PG +TAL+G +
Sbjct: 5 SGSLAPLNMKGLVKFQDVSFA--YPNHPNVQ--------VLQGLTFTLYPGKVTALVGPN 54
Query: 875 GAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTV-YE 931
G+GK+T+ +L + TG G + + G P Q + + +H+ V E
Sbjct: 55 GSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ---------YDHHYLHTQVAAVGQE 101
Query: 932 SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLP-------GVSG--LSTE 982
LL+ R TR +EEI + + + G P G +G L+
Sbjct: 102 PLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVG 160
Query: 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSI- 1040
QR+ + +A L+ P ++ +D TS LDA V R + + + RTV+ Q S+
Sbjct: 161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLA 220
Query: 1041 ------------DIFEAFDELFLMKRGG 1056
+ E L LM+RGG
Sbjct: 221 ERAHHILFLKEGSVCEQGTHLQLMERGG 248
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 10/172 (5%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIKISGYPKKQETFA 911
LN VS G + ++G SGAGK+TL+ ++L G + +++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
R Q + + + S + LP ++D+ + + EL+ L L
Sbjct: 104 R-----RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
P S LS Q++R+ IA L +NP ++ D+ TS LD ++ +++
Sbjct: 159 SYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 10/132 (7%)
Query: 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLL 351
+SGGQ++RV L L D+ ++ LD +TT I+ L+ I L G ++ +
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLIT 221
Query: 352 QPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVTSKKDQ 411
+ D + +IS G+++ Q V F PK F+Q
Sbjct: 222 HEMDVVKRICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKFIQSTLHLDIP 273
Query: 412 QQYWVR-KEEPY 422
+ Y R + EP+
Sbjct: 274 EDYQERLQAEPF 285
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 17/211 (8%)
Query: 863 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK------QETFARISGY 916
+ G + ++G +G GK+T + +LAG+ N G + Q F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 917 CEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL-NPLRQSLVGLPG 975
+ + V + + + L D + LEE+++ +EL N L +
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK---LEEVVKALELENVLERE------ 155
Query: 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1035
+ LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 1036 HQPSI-DIFEAFDELFLMKRGGYEIYVGPLG 1065
H ++ D + + G Y I+ P G
Sbjct: 216 HDLAVLDYLSDIIHVVYGEPGVYGIFSQPKG 246
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 84/210 (40%), Gaps = 30/210 (14%)
Query: 860 GAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFARISGYC 917
G + G + ++G +G GKTT + LAG T G I ++ ++ P+ Y
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ----------YI 356
Query: 918 EQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977
+ + YE +Y ++ D + E+++ + + L V+
Sbjct: 357 KAD---------YEGTVYELLSKI--DASKLNSNFYKTELLKPLGIIDLYDR-----EVN 400
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037
LS + +R+ IA L+ + I +DEP++ LD V R +R+ + +
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 1038 PSIDIFEAFDEL--FLMKRGGYEIYVGPLG 1065
+ I D L F + G Y + P G
Sbjct: 461 DVLXIDYVSDRLXVFEGEPGKYGRALPPXG 490
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 43/218 (19%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--------------RKTGGYITGNIKI 900
L VS G + G +G+GK+TL+ ++AG RK G I NI I
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 82
Query: 901 S-GYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIME 959
+ YP+ Q FA V++ + + A PD D +++ ME
Sbjct: 83 AFQYPEDQ-FFAE---------------RVFDEVAF-AVKNFYPDRDPVP---LVKKAME 122
Query: 960 LV--ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
V + + + + LS +++R+ IA +V P I+ +DEP GLD +
Sbjct: 123 FVGLDFDSFKDRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDL 177
Query: 1018 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+R V G+TV+ H + D + ++++G
Sbjct: 178 LRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKG 214
Score = 36.6 bits (83), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILN--GTAVISL 350
+SGG+++RV ++V L +DE GLD T L +I+ G VI +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK----TDLLRIVEKWKTLGKTVILI 194
Query: 351 LQPAPETYDLFDDIILISEGQIVFQGPREHVLE 383
+ D ++++ +G+ VF G R LE
Sbjct: 195 SHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 25/212 (11%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISG---YPKKQETF 910
+LN +S + PG + ++G SG GKTTL+ LAG + +G I +SG + K
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 911 ARIS--GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ 968
R GY Q + P++TVY ++ Y + R +E ++EL ++ L
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAG 133
Query: 969 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV--- 1025
LS Q++R +A L +P +I +DEP S LD + + R +R +
Sbjct: 134 RY-----PHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQIREDMIAA 184
Query: 1026 --DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
G++ V H + + D + +MK+G
Sbjct: 185 LRANGKSAVFVSHDRE-EALQYADRIAVMKQG 215
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 43/218 (19%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--------------RKTGGYITGNIKI 900
L VS G + G +G+GK+TL+ ++AG RK G I NI I
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 84
Query: 901 S-GYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIME 959
+ YP+ Q FA V++ + + A PD D +++ ME
Sbjct: 85 AFQYPEDQ-FFAE---------------RVFDEVAF-AVKNFYPDRDPVP---LVKKAME 124
Query: 960 LV--ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
V + + + + LS +++R+ IA +V P I+ +DEP GLD +
Sbjct: 125 FVGLDFDSFKDRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDL 179
Query: 1018 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
+R V G+TV+ H + D + ++++G
Sbjct: 180 LRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKG 216
Score = 36.6 bits (83), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILN--GTAVISL 350
+SGG+++RV ++V L +DE GLD T L +I+ G VI +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK----TDLLRIVEKWKTLGKTVILI 196
Query: 351 LQPAPETYDLFDDIILISEGQIVFQGPREHVLE 383
+ D ++++ +G+ VF G R LE
Sbjct: 197 SHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 229
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 24/203 (11%)
Query: 842 MKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKIS 901
M+LQ V + L +SG R G + L+G +GAGK+TL+ +AG +G G+I+ +
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 902 GYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSA--WLRLPPDVDSETRRMFLEEIME 959
G P + + +++ +H ++ ++ ++ W L +TR L ++
Sbjct: 60 GQPLEAWSATKLA-------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAG 112
Query: 960 LVEL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARA 1013
+ L + L +S L G QR RL V + ANP+ ++ +D+P + LD
Sbjct: 113 ALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ 168
Query: 1014 AAIVMRTVRNTVDTGRTVVCTIH 1036
+ + + + G +V + H
Sbjct: 169 QSALDKILSALSQQGLAIVMSSH 191
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 11/190 (5%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIKISGYPKKQETFA 911
LN VS G + ++G SGAGK+TL+ ++L G + +++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
R Q + + S + LP ++D+ + + EL+ L L
Sbjct: 104 R-----RQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 1030
P S LS Q++R+ IA L +NP ++ D+ TS LD ++ +++ G T
Sbjct: 159 SYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLT 216
Query: 1031 VVCTIHQPSI 1040
++ H+ +
Sbjct: 217 ILLITHEXDV 226
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 10/137 (7%)
Query: 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTA 346
D +SGGQ++RV L L D+ ++ LD +TT I+ L+ I L G
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLT 216
Query: 347 VISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQEVT 406
++ + + D + +IS G+++ Q V F PK F+Q
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKFIQSTL 268
Query: 407 SKKDQQQYWVR-KEEPY 422
+ Y R + EP+
Sbjct: 269 HLDIPEDYQERLQAEPF 285
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 24/203 (11%)
Query: 842 MKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKIS 901
M+LQ V + L +SG R G + L+G +GAGK+TL+ +AG +G G+I+ +
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 902 GYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSA--WLRLPPDVDSETRRMFLEEIME 959
G P + + +++ +H ++ ++ ++ W L +TR L ++
Sbjct: 60 GQPLEAWSATKLA-------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAG 112
Query: 960 LVEL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARA 1013
+ L + L +S L G QR RL V + ANP+ ++ +D+P LD
Sbjct: 113 ALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ 168
Query: 1014 AAIVMRTVRNTVDTGRTVVCTIH 1036
+ + + + G +V + H
Sbjct: 169 QSALDKILSALSQQGLAIVMSSH 191
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 22/190 (11%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARIS 914
L +SG R G + L+G +GAGK+TL+ AG +G G+I+ +G P + + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 915 GYCEQNDIHSPNVTVYESLLYSA--WLRLPPDVDSETRRMFLEEIMELVEL-NPLRQSLV 971
+H ++ ++ ++ W L +TR L ++ + L + L +S
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 972 GLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
L G QR RL V + ANP+ ++ +DEP + LD + + + +
Sbjct: 126 QLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQ 181
Query: 1027 TGRTVVCTIH 1036
G +V + H
Sbjct: 182 QGLAIVXSSH 191
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 98/257 (38%), Gaps = 43/257 (16%)
Query: 822 FEPLSLTFEDVVYSVDMPQEMKLQG---VLDDKLVLLNGVSGAFRPGVLTALMGVSGAGK 878
F P + F + VD+ +E ++ V D L G R G + ++G +G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 879 TTLMDVLAG--RKTGGYITGNIKISGYPK--KQETFARISGYCEQNDIHSPNVTVYESLL 934
TT + +LAG T G + ++ ++ P+ K E + + D N Y++ L
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL 455
Query: 935 YSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 994
I++L + N V LS + +R+ IA L+
Sbjct: 456 LKPL-----------------GIIDLYDRN-----------VEDLSGGELQRVAIAATLL 487
Query: 995 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054
+ I +DEP++ LD V R +R+ ++ + + I D L
Sbjct: 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI---- 543
Query: 1055 GGYEIYVGPLGRHSSHL 1071
++ G GRH L
Sbjct: 544 ----VFEGEPGRHGRAL 556
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 110/282 (39%), Gaps = 47/282 (16%)
Query: 821 PFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSG-------AFRPGVLTALMGV 873
PF +S+ V++P++ LD+ V GV+ + G++ ++G
Sbjct: 80 PFNAISI--------VNLPEQ------LDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGP 125
Query: 874 SGAGKTTLMDVLAGRKTGGYITGN------IKISGYPKKQETFARISGYCEQNDIHSPNV 927
+G GKTT + +LAG+ N I+ + Q F R+ + + V
Sbjct: 126 NGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYV 185
Query: 928 TVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRL 987
+ + L VD + F E + EL N L + L LS + +R+
Sbjct: 186 DLLPKAVKGKVRELLKKVDEVGK--FEEVVKELELENVLDREL------HQLSGGELQRV 237
Query: 988 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI-DIFEAF 1046
IA L+ F DEP+S LD R V R +R + G+ V+ H ++ D
Sbjct: 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDV 297
Query: 1047 DELFLMKRGGYEIYVGPLGRHSSHLISYFEAIPGVNKIKDGY 1088
+ + G Y I+ P G + G+N+ GY
Sbjct: 298 IHVVYGEPGVYGIFSKPKGTRN-----------GINEFLQGY 328
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTA 346
D L +SGG+ +RV L+ A F DE S+ LD ++ +R++ + G A
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN--EGKA 280
Query: 347 VISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQ 403
V+ +++ D D+I + G+ G F K G R G+ +FLQ
Sbjct: 281 VL-VVEHDLAVLDYLSDVIHVVYGEPGVYGI------FSKPKG----TRNGINEFLQ 326
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 18/122 (14%)
Query: 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTA 346
D + +SGG+ +RV L+ A +DE S LD + ++R ++ TA
Sbjct: 466 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525
Query: 347 VISLLQPAPETYDLFDDIILI---SEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQ 403
++ + D+++I S+ IVF+G MG R+G+ FL
Sbjct: 526 LV-----------VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGM----REGMNRFLA 570
Query: 404 EV 405
V
Sbjct: 571 SV 572
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 18/189 (9%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNIKISGYPKKQE 908
+L G+S G + L+G +GAGKTT + +++ + + G +T N+ + E
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV----VEEPHE 85
Query: 909 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ 968
IS E+ Y ++ +LR + + E + E+ L +
Sbjct: 86 VRKLISYLPEE-------AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE 138
Query: 969 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1028
+ VS S ++L IA L+ NP + +DEPTSGLD A V + ++ G
Sbjct: 139 KI--KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196
Query: 1029 RTVVCTIHQ 1037
T++ + H
Sbjct: 197 LTILVSSHN 205
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 22/190 (11%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARIS 914
L +SG R G + L+G +GAGK+TL+ AG +G G+I+ +G P + + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 915 GYCEQNDIHSPNVTVYESLLYSA--WLRLPPDVDSETRRMFLEEIMELVEL-NPLRQSLV 971
+H ++ ++ ++ W L +TR L ++ + L + L +S
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 972 GLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
L G QR RL V + ANP+ ++ +DEP + LD + + + +
Sbjct: 126 QLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQ 181
Query: 1027 TGRTVVCTIH 1036
G +V + H
Sbjct: 182 QGLAIVXSSH 191
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 98/257 (38%), Gaps = 43/257 (16%)
Query: 822 FEPLSLTFEDVVYSVDMPQEMKLQG---VLDDKLVLLNGVSGAFRPGVLTALMGVSGAGK 878
F P + F + VD+ +E ++ V D L G R G + ++G +G GK
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 381
Query: 879 TTLMDVLAG--RKTGGYITGNIKISGYPK--KQETFARISGYCEQNDIHSPNVTVYESLL 934
TT + +LAG T G + ++ ++ P+ K E + + D N Y++ L
Sbjct: 382 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL 441
Query: 935 YSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 994
I++L + N V LS + +R+ IA L+
Sbjct: 442 LKPL-----------------GIIDLYDRN-----------VEDLSGGELQRVAIAATLL 473
Query: 995 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054
+ I +DEP++ LD V R +R+ ++ + + I D L
Sbjct: 474 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI---- 529
Query: 1055 GGYEIYVGPLGRHSSHL 1071
++ G GRH L
Sbjct: 530 ----VFEGEPGRHGRAL 542
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 110/282 (39%), Gaps = 47/282 (16%)
Query: 821 PFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSG-------AFRPGVLTALMGV 873
PF +S+ V++P++ LD+ V GV+ + G++ ++G
Sbjct: 66 PFNAISI--------VNLPEQ------LDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGP 111
Query: 874 SGAGKTTLMDVLAGRKTGGYITGN------IKISGYPKKQETFARISGYCEQNDIHSPNV 927
+G GKTT + +LAG+ N I+ + Q F R+ + + V
Sbjct: 112 NGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYV 171
Query: 928 TVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRL 987
+ + L VD + F E + EL N L + L LS + +R+
Sbjct: 172 DLLPKAVKGKVRELLKKVDEVGK--FEEVVKELELENVLDREL------HQLSGGELQRV 223
Query: 988 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI-DIFEAF 1046
IA L+ F DEP+S LD R V R +R + G+ V+ H ++ D
Sbjct: 224 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDV 283
Query: 1047 DELFLMKRGGYEIYVGPLGRHSSHLISYFEAIPGVNKIKDGY 1088
+ + G Y I+ P G + G+N+ GY
Sbjct: 284 IHVVYGEPGVYGIFSKPKGTRN-----------GINEFLQGY 314
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTA 346
D L +SGG+ +RV L+ A F DE S+ LD ++ +R++ + G A
Sbjct: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN--EGKA 266
Query: 347 VISLLQPAPETYDLFDDIILISEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQ 403
V+ +++ D D+I + G+ G F K G R G+ +FLQ
Sbjct: 267 VL-VVEHDLAVLDYLSDVIHVVYGEPGVYGI------FSKPKG----TRNGINEFLQ 312
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 18/122 (14%)
Query: 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTA 346
D + +SGG+ +RV L+ A +DE S LD + ++R ++ TA
Sbjct: 452 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 511
Query: 347 VISLLQPAPETYDLFDDIILI---SEGQIVFQGPREHVLEFFKSMGFECPKRKGVADFLQ 403
++ + D+++I S+ IVF+G MG R+G+ FL
Sbjct: 512 LV-----------VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGM----REGMNRFLA 556
Query: 404 EV 405
V
Sbjct: 557 SV 558
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 21/194 (10%)
Query: 865 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFARISGYCEQNDI 922
G + A++G +G GK+TL+D+L G R G I I P + F+ Y
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVP---QFFSSPFAY------ 81
Query: 923 HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982
S+L + +++ + + + + L+ L + + + LS
Sbjct: 82 ---------SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGG 132
Query: 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 1041
QR+ + IA + + +I +DEPTS LD IV+ + + + TVV T HQP+
Sbjct: 133 QRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV 192
Query: 1042 IFEAFDELFLMKRG 1055
+ A L L K+
Sbjct: 193 VAIANKTLLLNKQN 206
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%)
Query: 269 DYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTT 328
DY + + LD T + +SGGQR+ + + + +DE ++ LD +
Sbjct: 105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 329 FQIVTSLRQIIHILNGTAVISLLQP 353
+++ L + N T V + QP
Sbjct: 165 DIVLSLLIDLAQSQNMTVVFTTHQP 189
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 23/170 (13%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARIS 914
LNG++ + G L A++G G GK++L+ L + G++ I G A I
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKGSVAYVPQQAWI- 77
Query: 915 GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL---RQSLV 971
QND ++ E++L+ L P R ++ L +L L ++ +
Sbjct: 78 ----QND------SLRENILFGCQLEEP------YYRSVIQACALLPDLEILPSGDRTEI 121
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 122 GEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 25/213 (11%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGNIKISGYPKKQET 909
L+N VS G + A++G +GAGK+TL+ +L G + ++ G S PK
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK---A 82
Query: 910 FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS 969
AR Q + +V E + R P R L+++M + L Q
Sbjct: 83 LARTRAVMRQYSELAFPFSVSEVIQMG---RAP--YGGSQDRQALQQVMAQTDCLALAQR 137
Query: 970 LVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023
+ LS +++R+ +A L P +F+DEPTS LD +R +R
Sbjct: 138 DYRV-----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQ 192
Query: 1024 -TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055
T V C +H ++ A D + L+ +G
Sbjct: 193 LTRQEPLAVCCVLHDLNLAALYA-DRIMLLAQG 224
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 15/188 (7%)
Query: 863 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQN-- 920
RPG + L+G +G GK+T + +LAG++ + P+ QE G QN
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLG----RFDDPPEWQEIIKYFRGSELQNYF 156
Query: 921 ------DIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVE--LNPLRQSLVG 972
DI + Y + A ++ P E ++ +E+ E V+ + L+ V
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPRA-IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVL 215
Query: 973 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1032
+ LS + +R I + V + DEP+S LD + + +R+ + + V+
Sbjct: 216 KRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275
Query: 1033 CTIHQPSI 1040
C H S+
Sbjct: 276 CVEHDLSV 283
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 68/171 (39%), Gaps = 28/171 (16%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFA 911
+LN G F + +MG +G GKTTL+ +LAG + G + +S P Q+
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKP--QKIAP 424
Query: 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
+ G Q L + + R FL + + PLR +
Sbjct: 425 KFPGTVRQ-------------LFF-----------KKIRGQFLNPQFQTDVVKPLRIDDI 460
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
V LS + +R+ I + L I +DEP++ LD+ I + +R
Sbjct: 461 IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 79/186 (42%), Gaps = 17/186 (9%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L +S + PG L+G +G+GK+TL+ G I+I G T +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQW 92
Query: 914 SGYCEQNDIHSPNVTVYESLLYSAWLR--LPPDV---DSETRRMFLE-EIMELVELNPLR 967
+ V + ++S R L P+ D E ++ E + ++E P +
Sbjct: 93 R--------KAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGK 144
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
V + G LS ++ + +A +++ I+ +DEP++ LD I+ RT++
Sbjct: 145 LDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFAD 204
Query: 1028 GRTVVC 1033
++C
Sbjct: 205 CTVILC 210
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 38.1 bits (87), Expect = 0.031, Method: Composition-based stats.
Identities = 47/187 (25%), Positives = 92/187 (49%), Gaps = 25/187 (13%)
Query: 870 LMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP-KKQETFARISGYCEQNDIHSPNVT 928
++G +G+GKTTL+ ++G +GNI I+G +K + R S + + VT
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGMEVRKIRNYIRYS--TNLPEAYEIGVT 89
Query: 929 VYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP--LRQSLVGLPGVSGLSTEQRKR 986
V ++Y L ++ R +FLE +++ ++L LR+ L L +G S R
Sbjct: 90 V-NDIVY-----LYEELKGLDRDLFLE-MLKALKLGEEILRRKLYKLS--AGQSVLVRTS 140
Query: 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ-PSIDIFEA 1045
L +A + P I+ +DEP +DA ++ R ++ + G+ + H+ +++++
Sbjct: 141 LALA----SQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHELDMLNLYKE 193
Query: 1046 FDELFLM 1052
+ FL+
Sbjct: 194 YKAYFLV 200
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 37.0 bits (84), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 28/159 (17%)
Query: 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFAR 912
+LLN + + G +G GK+TLM +A N ++ G+P ++E
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA----------NGQVDGFPTQEECR-- 496
Query: 913 ISGYCEQN-DIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
+ Y E + D + +V + + S T+ ++++E ++
Sbjct: 497 -TVYVEHDIDGTHSDTSVLDFVFESG---------VGTKEAIKDKLIEF----GFTDEMI 542
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+P +S LS + +L +A ++ N I+ +DEPT+ LD
Sbjct: 543 AMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 951 RMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
R +EE ++ L+P +V + GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 877 RKEIEEHCSMLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 869 ALMGVSGAGKTTLMDVLAGR--KTGG--YITGNIKISGYPKKQETFARISGYCEQ 919
A++G +GAGK+TL++VL G T G Y N +I+ KQ FA I + ++
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI--KQHAFAHIESHLDK 755
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD-- 883
S+ + SVD +++ + G + L G+ +F GVLT++ GVSG+GK+TL++
Sbjct: 632 SIEIPAIRRSVDPRRQLTVVGAREHNL---RGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688
Query: 884 ---VLAGRKTG 891
VLA R G
Sbjct: 689 LAAVLANRLNG 699
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 979 LSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1035
LS + +R+ +A EL + + +DEPT+GL ++ + VD G TV+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 1036 HQPSIDIFEAFD 1047
H ++D+ + D
Sbjct: 924 H--NLDVIKTSD 933
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 20/158 (12%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L ++ G L A+ G +GAGKT+L+ ++ G G IK SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 914 SGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEE-IMELVELNPLRQSLVG 972
S +C QN P T+ E+++ ++ S + LEE I + E + + ++G
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEYR--YRSVIKACQLEEDISKFAEKDNI---VLG 154
Query: 973 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
G++ LS QR R+++A + + + +D P LD
Sbjct: 155 EGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 31/183 (16%)
Query: 856 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNIKISG---YPKKQETF 910
+G+S +TA++G S +GK+T+++ + G ++G + G ++E
Sbjct: 25 DGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEEL 84
Query: 911 ARIS-------GYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIME---- 959
+I Q + +P + V E + V++ R E++E
Sbjct: 85 RKIRWKEIALVPQAAQQSL-NPTMKVIEHFKDT--------VEAHGVRWSHSELIEKASE 135
Query: 960 ---LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1016
+V LNP L P LS ++R+ IA+ L+ +P ++ +DEPTS LD A
Sbjct: 136 KLRMVRLNP-EAVLNSYP--LQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAH 192
Query: 1017 VMR 1019
+++
Sbjct: 193 IIQ 195
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 20/158 (12%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L ++ G L A+ G +GAGKT+L+ ++ G G IK SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 914 SGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEE-IMELVELNPLRQSLVG 972
S +C QN P T+ E+++ ++ S + LEE I + E + + ++G
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEYR--YRSVIKACQLEEDISKFAEKDNI---VLG 154
Query: 973 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
G++ LS QR R+++A + + + +D P LD
Sbjct: 155 EGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 1028 GRTVVCTIHQPSIDIFEAFDELFLM-----KRGGYEIYVG 1062
G TV+ H ++D+ + D + + RGG + VG
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 902 GYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEI---- 957
GY K+E+ A + G ++ + +VT E+L + L L + +++ R+ L EI
Sbjct: 429 GYRLKKESLAVLVGGKHIGEVTAMSVT--EALAFFDGLELT-EKEAQIARLILREIRDRL 485
Query: 958 --MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
++ V L+ L +L G QR RL + + +DEP+ GL R
Sbjct: 486 GFLQNVGLDYL--TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDND 543
Query: 1016 IVMRTVRNTVDTGRTVVCTIH 1036
++ T+++ D G T++ H
Sbjct: 544 RLIATLKSMRDLGNTLIVVEH 564
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 537 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 1028 GRTVVCTIHQPSIDIFEAFDELFLM-----KRGGYEIYVG 1062
G TV+ H ++D+ + D + + RGG + VG
Sbjct: 596 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 633
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 1028 GRTVVCTIHQPSIDIFEAFDELFLM-----KRGGYEIYVG 1062
G TV+ H ++D+ + D + + RGG + VG
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 902 GYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEI---- 957
GY K+E+ A + G ++ + +VT E+L + L L + +++ R+ L EI
Sbjct: 429 GYRLKKESLAVLVGGKHIGEVTAXSVT--EALAFFDGLELT-EKEAQIARLILREIRDRL 485
Query: 958 --MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
++ V L+ L +L G QR RL + + +DEP+ GL R
Sbjct: 486 GFLQNVGLDYL--TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDND 543
Query: 1016 IVMRTVRNTVDTGRTVVCTIH 1036
++ T+++ D G T++ H
Sbjct: 544 RLIATLKSXRDLGNTLIVVEH 564
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+G P + LS + +R+ +A EL + + +DEPT GL ++ + VD
Sbjct: 799 LGQPATT-LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857
Query: 1028 GRTVVCTIHQPSIDIFEAFDELFLM-----KRGGYEIYVG 1062
G TV+ H ++D+ + D + + K GGY + G
Sbjct: 858 GNTVIVIEH--NLDVIKNADHIIDLGPEGGKEGGYIVATG 895
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 983 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1040
QR RL + I +DEPT GL R +++T++ D G TV+ H +
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate Regulatory
Protein (Bt4638) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 33.5 bits (75), Expect = 0.85, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 1002 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1049
MD+ G+++ A IV+ R ++G+ + IH+ +I+I +A DEL
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDEL 150
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 979 LSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1035
LS + +R+ +A EL + ++ +DEPT+GL + R + VD G TV+
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 1036 HQ 1037
H+
Sbjct: 791 HK 792
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 29/163 (17%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L ++ G L A+ G +GAGKT+L+ ++ G G IK SG RI
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 83
Query: 914 SGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFL------EEIMELVELNPLR 967
S +C Q P T+ E++++ D R + E+I + E + +
Sbjct: 84 S-FCSQFSWIMPG-TIKENIIFGV------SYDEYRYRSVIKACQLEEDISKFAEKDNI- 134
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
++G G++ LS QR R+++A + + + +D P LD
Sbjct: 135 --VLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 174
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 869 ALMGVSGAGKTTLMDVLAGR--KTGG--YITGNIKISGYPKKQETFARISGYCEQ 919
A++G +GAGK+TL++VL G T G Y N +I+ KQ FA I + ++
Sbjct: 697 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI--KQHAFAHIESHLDK 749
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 951 RMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
R +EE + L+P +V + GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 871 RKEIEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 927
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 869 ALMGVSGAGKTTLMDVLAGR--KTGG--YITGNIKISGYPKKQETFARISGYCEQ 919
A++G +GAGK+TL++VL G T G Y N +I+ KQ FA I + ++
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI--KQHAFAHIESHLDK 755
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 951 RMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
R +EE + L+P +V + GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 877 RKEIEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 29/163 (17%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L ++ G L A+ G +GAGKT+L+ ++ G G IK SG RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 914 SGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFL------EEIMELVELNPLR 967
S +C Q P T+ E++++ D R + E+I + E + +
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIFGV------SYDEYRYRSVIKACQLEEDISKFAEKDNI- 122
Query: 968 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
++G G++ LS QR R+++A + + + +D P LD
Sbjct: 123 --VLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 162
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 891
L +S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 28 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 64
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 291 RGISGGQRKRVTT------GEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNG 344
RG+SGG+R ++ E+ G A F+DE + LD+ +I + L+++ +
Sbjct: 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL--- 334
Query: 345 TAVISLLQPAPETYDLFDDIILISEGQIV 373
VI + E + FD + I+ G +V
Sbjct: 335 NKVIVFITHDREFSEAFDRKLRITGGVVV 363
>pdb|1U1H|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U1J|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U1U|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U22|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
Length = 765
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 301 VTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360
V T +LVGP L + + + G+D S F++++ L +I+ I VI+ L+ A T+
Sbjct: 149 VDTVPVLVGPVSYLLLSKAAKGVDKS--FELLSLLPKILPIYK--EVITELKAAGATWIQ 204
Query: 361 FDDIILIS--EGQ 371
D+ +L+ EGQ
Sbjct: 205 LDEPVLVXDLEGQ 217
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 23/160 (14%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L ++ G L A+ G +GAGKT+L+ ++ G G IK SG F+ I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWI 110
Query: 914 -SGYCEQNDIH--SPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
G ++N I S + Y S++ + L E+I + E + + +
Sbjct: 111 MPGTIKENIIAGVSYDEYRYRSVIKACQLE--------------EDISKFAEKDNI---V 153
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+G G++ LS QR R+++A + + + +D P LD
Sbjct: 154 LGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 22/159 (13%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L ++ G L A+ G +GAGKT+L+ ++ G G IK SG F+ I
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWI 80
Query: 914 -SGYCEQNDIH-SPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
G ++N I S + Y S++ + L E+I + E + + ++
Sbjct: 81 MPGTIKENIIGVSYDEYRYRSVIKACQLE--------------EDISKFAEKDNI---VL 123
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
G G++ LS QR R+++A + + + +D P LD
Sbjct: 124 GEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 161
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 858 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 891
+S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 42 LSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 23/160 (14%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L ++ G + A+ G +G+GKT+L+ ++ G G IK SG F+ I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 914 -SGYCEQNDIH--SPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
G ++N I S + Y+S++ + L+ ++I + E + ++
Sbjct: 111 MPGTIKENIIRGVSYDEYRYKSVVKACQLQ--------------QDITKFAEQD---NTV 153
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+G GV+ LS QR R+++A + + + +D P LD
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 23/160 (14%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L ++ G + A+ G +G+GKT+L+ ++ G G IK SG F+ I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 914 -SGYCEQNDIH--SPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
G ++N I S + Y+S++ + L+ ++I + E + ++
Sbjct: 111 MPGTIKENIIFGVSYDEYRYKSVVKACQLQ--------------QDITKFAEQD---NTV 153
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+G GV+ LS QR R+++A + + + +D P LD
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 22/159 (13%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L ++ G + A+ G +G+GKT+L+ ++ G G IK SG F+ I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 914 -SGYCEQNDIH-SPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV 971
G ++N I S + Y+S++ + L+ ++I + E + +++
Sbjct: 111 MPGTIKENIIGVSYDEYRYKSVVKACQLQ--------------QDITKFAEQD---NTVL 153
Query: 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
G GV+ LS QR R+++A + + + +D P LD
Sbjct: 154 GEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 23/160 (14%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L ++ G + A+ G +G+GKT+L+ ++ G G IK SG F+ I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 914 -SGYCEQNDIH--SPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
G ++N I S + Y+S++ + L+ ++I + E + ++
Sbjct: 111 MPGTIKENIISGVSYDEYRYKSVVKACQLQ--------------QDITKFAEQD---NTV 153
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+G GV+ LS QR R+++A + + + +D P LD
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 23/160 (14%)
Query: 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARI 913
+L ++ G + A+ G +G+GKT+L+ ++ G G IK SG F+ I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 914 -SGYCEQNDIH--SPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL 970
G ++N I S + Y+S++ + L+ ++I + E + ++
Sbjct: 111 MPGTIKENIIFGVSYDEYRYKSVVKACQLQ--------------QDITKFAEQD---NTV 153
Query: 971 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+G GV+ LS QR R+++A + + + +D P LD
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|2QMW|A Chain A, The Crystal Structure Of The Prephenate Dehydratase (Pdt)
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|2QMW|B Chain B, The Crystal Structure Of The Prephenate Dehydratase (Pdt)
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 267
Score = 30.0 bits (66), Expect = 9.8, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 795 NSTSQSLSLTEEDIAANQPKRSGMVLPFEPLSLTFEDVVYSVDMPQEMKLQGVLDDKLVL 854
+ST QSL+ E +AA P SG F P+ ED ++V +K Q D
Sbjct: 129 DSTIQSLTKIENGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQQQFDQ---- 184
Query: 855 LNGVSGAF-------RPGVLTALM 871
N S F +PG+L +++
Sbjct: 185 -NATSLXFLITPXHDKPGLLASVL 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,493,026
Number of Sequences: 62578
Number of extensions: 1611893
Number of successful extensions: 3708
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3401
Number of HSP's gapped (non-prelim): 272
length of query: 1425
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1314
effective length of database: 8,027,179
effective search space: 10547713206
effective search space used: 10547713206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)