Query 047682
Match_columns 1425
No_of_seqs 816 out of 5930
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 00:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1.7E-73 5.9E-78 777.8 55.8 215 825-1064 1075-1299(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 5.5E-67 1.9E-71 712.1 55.3 214 826-1064 1030-1253(1284)
3 3bk7_A ABC transporter ATP-bin 100.0 3.6E-57 1.2E-61 568.7 33.6 202 826-1066 357-560 (607)
4 1yqt_A RNAse L inhibitor; ATP- 100.0 4.5E-57 1.5E-61 562.9 31.1 202 826-1066 287-490 (538)
5 2iw3_A Elongation factor 3A; a 100.0 5E-55 1.7E-59 563.6 38.2 184 134-382 448-634 (986)
6 3ozx_A RNAse L inhibitor; ATP 100.0 1.1E-55 3.9E-60 548.3 30.4 216 826-1078 269-486 (538)
7 3ux8_A Excinuclease ABC, A sub 100.0 4.3E-54 1.5E-58 553.9 37.6 215 133-382 30-297 (670)
8 3j16_B RLI1P; ribosome recycli 100.0 3.7E-54 1.3E-58 539.9 29.5 201 853-1078 361-568 (608)
9 3tui_C Methionine import ATP-b 100.0 5.4E-41 1.8E-45 392.7 28.4 207 133-382 40-252 (366)
10 3pih_A Uvrabc system protein A 100.0 1.2E-40 4E-45 430.7 34.1 196 854-1064 599-897 (916)
11 3tui_C Methionine import ATP-b 100.0 7.2E-41 2.5E-45 391.6 27.1 218 826-1064 24-248 (366)
12 3fvq_A Fe(3+) IONS import ATP- 100.0 1.4E-40 4.7E-45 389.4 28.3 207 134-383 17-228 (359)
13 3tif_A Uncharacterized ABC tra 100.0 1.3E-40 4.3E-45 372.3 26.8 220 827-1065 2-230 (235)
14 3rlf_A Maltose/maltodextrin im 100.0 1.6E-40 5.4E-45 391.3 28.8 207 134-383 16-223 (381)
15 3rlf_A Maltose/maltodextrin im 100.0 1.7E-40 5.9E-45 391.0 27.5 215 826-1065 3-219 (381)
16 3fvq_A Fe(3+) IONS import ATP- 100.0 1.2E-40 4.2E-45 389.9 25.1 215 826-1065 4-224 (359)
17 3gfo_A Cobalt import ATP-bindi 100.0 1.4E-40 4.8E-45 378.9 24.9 216 826-1065 7-229 (275)
18 2pcj_A ABC transporter, lipopr 100.0 2.5E-40 8.5E-45 367.5 26.2 212 827-1064 5-223 (224)
19 2olj_A Amino acid ABC transpor 100.0 3E-40 1E-44 374.1 27.3 213 827-1064 25-243 (263)
20 2r6f_A Excinuclease ABC subuni 100.0 1.5E-39 5E-44 415.8 35.7 195 854-1064 639-937 (972)
21 1b0u_A Histidine permease; ABC 100.0 3.6E-40 1.2E-44 374.5 26.4 213 827-1064 7-237 (262)
22 1vpl_A ABC transporter, ATP-bi 100.0 5.9E-40 2E-44 370.6 25.8 214 826-1064 15-230 (256)
23 3gfo_A Cobalt import ATP-bindi 100.0 6.8E-40 2.3E-44 373.3 26.3 206 135-383 22-233 (275)
24 3tif_A Uncharacterized ABC tra 100.0 9.5E-40 3.3E-44 365.2 26.9 207 134-381 18-232 (235)
25 2yyz_A Sugar ABC transporter, 100.0 1.3E-39 4.4E-44 382.8 29.3 207 134-383 16-223 (359)
26 4g1u_C Hemin import ATP-bindin 100.0 1.7E-39 6E-44 369.1 28.3 204 134-382 24-236 (266)
27 1g6h_A High-affinity branched- 100.0 5.1E-40 1.7E-44 372.7 23.2 217 826-1064 7-237 (257)
28 2olj_A Amino acid ABC transpor 100.0 2.6E-39 8.7E-44 366.5 28.4 206 134-383 37-248 (263)
29 2pcj_A ABC transporter, lipopr 100.0 1.8E-39 6.1E-44 360.6 26.4 200 134-378 17-223 (224)
30 1z47_A CYSA, putative ABC-tran 100.0 1.1E-39 3.7E-44 382.3 25.9 216 826-1065 14-231 (355)
31 1z47_A CYSA, putative ABC-tran 100.0 1.2E-39 4.1E-44 382.0 26.1 207 134-383 28-235 (355)
32 2it1_A 362AA long hypothetical 100.0 1.4E-39 4.8E-44 382.9 26.1 213 827-1064 4-218 (362)
33 2it1_A 362AA long hypothetical 100.0 1.4E-39 4.8E-44 382.9 26.1 207 134-383 16-223 (362)
34 2yyz_A Sugar ABC transporter, 100.0 1.2E-39 4.1E-44 383.0 25.4 214 827-1065 4-219 (359)
35 1g29_1 MALK, maltose transport 100.0 2.3E-39 7.8E-44 383.4 27.6 213 827-1064 4-224 (372)
36 2vf7_A UVRA2, excinuclease ABC 100.0 5.6E-39 1.9E-43 412.0 33.4 195 854-1064 512-822 (842)
37 1v43_A Sugar-binding transport 100.0 2.6E-39 9E-44 381.9 27.8 207 134-383 24-231 (372)
38 1g29_1 MALK, maltose transport 100.0 3.3E-39 1.1E-43 382.0 28.6 207 134-383 16-229 (372)
39 1b0u_A Histidine permease; ABC 100.0 2.1E-39 7.3E-44 368.1 25.7 206 134-383 19-242 (262)
40 3nh6_A ATP-binding cassette SU 100.0 6.1E-40 2.1E-44 378.2 21.5 208 134-383 67-277 (306)
41 1ji0_A ABC transporter; ATP bi 100.0 1.6E-39 5.5E-44 364.8 24.3 213 826-1064 6-223 (240)
42 4g1u_C Hemin import ATP-bindin 100.0 1.3E-39 4.5E-44 370.1 22.7 213 826-1065 11-233 (266)
43 1oxx_K GLCV, glucose, ABC tran 100.0 2.9E-39 9.9E-44 380.3 26.2 205 136-383 20-230 (353)
44 1vpl_A ABC transporter, ATP-bi 100.0 5E-39 1.7E-43 363.0 26.8 206 134-383 28-235 (256)
45 1oxx_K GLCV, glucose, ABC tran 100.0 1.4E-39 4.9E-44 382.9 22.9 214 827-1065 4-226 (353)
46 1v43_A Sugar-binding transport 100.0 2.2E-39 7.4E-44 382.6 24.2 214 827-1065 12-227 (372)
47 3d31_A Sulfate/molybdate ABC t 100.0 2.6E-39 8.7E-44 379.2 24.3 201 136-382 15-216 (348)
48 1g6h_A High-affinity branched- 100.0 3.8E-39 1.3E-43 365.5 24.6 216 134-380 20-239 (257)
49 1ji0_A ABC transporter; ATP bi 100.0 6.9E-39 2.3E-43 359.7 25.6 204 134-382 19-227 (240)
50 2ygr_A Uvrabc system protein A 100.0 3.3E-38 1.1E-42 405.0 33.9 195 854-1064 657-955 (993)
51 3d31_A Sulfate/molybdate ABC t 100.0 5.6E-39 1.9E-43 376.3 21.7 210 827-1065 2-213 (348)
52 2yz2_A Putative ABC transporte 100.0 9.5E-39 3.2E-43 363.9 22.5 217 827-1064 3-222 (266)
53 2d2e_A SUFC protein; ABC-ATPas 100.0 1.2E-38 4.1E-43 359.9 23.0 218 827-1064 4-228 (250)
54 2onk_A Molybdate/tungstate ABC 100.0 1.1E-38 3.9E-43 356.9 21.4 208 827-1064 2-211 (240)
55 2ihy_A ABC transporter, ATP-bi 100.0 7.9E-39 2.7E-43 366.0 20.0 218 826-1065 21-248 (279)
56 2onk_A Molybdate/tungstate ABC 100.0 2.1E-38 7.4E-43 354.6 22.7 202 136-383 14-216 (240)
57 2zu0_C Probable ATP-dependent 100.0 7.8E-38 2.7E-42 356.3 25.9 221 826-1065 20-250 (267)
58 2yz2_A Putative ABC transporte 100.0 8E-38 2.7E-42 356.2 25.2 205 134-383 20-227 (266)
59 2nq2_C Hypothetical ABC transp 100.0 1.5E-37 5E-42 350.9 26.1 207 827-1065 5-213 (253)
60 2ihy_A ABC transporter, ATP-bi 100.0 9.3E-38 3.2E-42 357.1 23.3 210 134-382 34-251 (279)
61 3nh6_A ATP-binding cassette SU 100.0 4.3E-38 1.5E-42 362.8 19.8 211 825-1064 52-272 (306)
62 2qi9_C Vitamin B12 import ATP- 100.0 9.7E-38 3.3E-42 351.0 22.0 193 854-1064 15-217 (249)
63 2ff7_A Alpha-hemolysin translo 100.0 2.1E-37 7.3E-42 348.6 23.2 200 134-382 22-231 (247)
64 2ff7_A Alpha-hemolysin translo 100.0 1.6E-37 5.4E-42 349.7 21.8 211 826-1064 7-227 (247)
65 2ixe_A Antigen peptide transpo 100.0 7.6E-38 2.6E-42 356.9 18.8 214 826-1064 16-240 (271)
66 2d2e_A SUFC protein; ABC-ATPas 100.0 2.5E-37 8.7E-42 349.1 21.9 206 134-380 16-230 (250)
67 1sgw_A Putative ABC transporte 100.0 4.9E-38 1.7E-42 345.0 15.3 198 826-1053 10-207 (214)
68 2nq2_C Hypothetical ABC transp 100.0 1.7E-36 5.9E-41 342.2 27.3 197 134-381 18-215 (253)
69 2zu0_C Probable ATP-dependent 100.0 1.6E-36 5.6E-41 345.4 24.8 221 134-391 33-261 (267)
70 1mv5_A LMRA, multidrug resista 100.0 2.3E-37 7.7E-42 348.2 16.1 210 827-1064 2-221 (243)
71 2qi9_C Vitamin B12 import ATP- 100.0 1.2E-36 4.2E-41 342.0 21.4 197 135-381 14-220 (249)
72 2ixe_A Antigen peptide transpo 100.0 7.5E-37 2.5E-41 348.7 19.7 209 134-383 32-245 (271)
73 1mv5_A LMRA, multidrug resista 100.0 7.6E-37 2.6E-41 343.9 17.9 202 134-383 15-226 (243)
74 2pjz_A Hypothetical protein ST 100.0 3.2E-36 1.1E-40 341.1 23.1 194 134-382 18-214 (263)
75 4a82_A Cystic fibrosis transme 100.0 1.1E-36 3.8E-41 384.8 21.2 208 134-383 354-564 (578)
76 2pjz_A Hypothetical protein ST 100.0 2.7E-36 9.1E-41 341.8 21.1 206 827-1064 2-210 (263)
77 2ghi_A Transport protein; mult 100.0 3.8E-36 1.3E-40 341.1 21.2 211 826-1064 17-237 (260)
78 3qf4_A ABC transporter, ATP-bi 100.0 2.1E-36 7.2E-41 382.3 20.7 208 134-383 356-566 (587)
79 3gd7_A Fusion complex of cysti 100.0 2.1E-36 7.2E-41 359.3 16.6 199 134-383 34-242 (390)
80 2yl4_A ATP-binding cassette SU 100.0 1E-35 3.5E-40 377.5 22.9 204 134-383 357-570 (595)
81 2ghi_A Transport protein; mult 100.0 1.5E-35 5.3E-40 336.0 21.2 200 134-383 33-242 (260)
82 1sgw_A Putative ABC transporte 100.0 5.4E-36 1.8E-40 328.8 16.0 188 135-372 23-210 (214)
83 3qf4_B Uncharacterized ABC tra 100.0 8.7E-36 3E-40 377.8 20.1 208 134-383 368-578 (598)
84 4f4c_A Multidrug resistance pr 100.0 4E-36 1.4E-40 410.2 17.8 210 134-383 1092-1304(1321)
85 2pze_A Cystic fibrosis transme 100.0 2.4E-35 8.4E-40 328.4 20.8 200 826-1064 6-213 (229)
86 3b5x_A Lipid A export ATP-bind 100.0 2E-35 6.9E-40 373.9 22.6 209 134-383 356-567 (582)
87 3b60_A Lipid A export ATP-bind 100.0 2.5E-35 8.5E-40 373.1 23.4 209 134-383 356-567 (582)
88 3gd7_A Fusion complex of cysti 100.0 5.8E-36 2E-40 355.6 16.1 210 826-1064 19-237 (390)
89 2cbz_A Multidrug resistance-as 100.0 3E-35 1E-39 329.2 19.9 199 827-1064 4-212 (237)
90 2pze_A Cystic fibrosis transme 100.0 3.5E-35 1.2E-39 327.2 19.5 196 134-382 21-217 (229)
91 2cbz_A Multidrug resistance-as 100.0 2.9E-35 9.9E-40 329.4 17.0 196 134-383 18-217 (237)
92 2yl4_A ATP-binding cassette SU 100.0 1.2E-34 4.1E-39 367.7 23.4 216 826-1065 340-566 (595)
93 3qf4_A ABC transporter, ATP-bi 100.0 4.9E-35 1.7E-39 369.8 18.6 212 825-1064 340-561 (587)
94 4a82_A Cystic fibrosis transme 100.0 2.4E-34 8.1E-39 363.5 22.8 212 825-1064 338-559 (578)
95 3b5x_A Lipid A export ATP-bind 100.0 2.3E-34 7.9E-39 364.2 21.9 212 826-1064 341-562 (582)
96 3b60_A Lipid A export ATP-bind 100.0 2.8E-34 9.4E-39 363.5 22.3 212 826-1064 341-562 (582)
97 3qf4_B Uncharacterized ABC tra 100.0 3.9E-34 1.3E-38 362.6 20.5 211 825-1064 353-573 (598)
98 2bbs_A Cystic fibrosis transme 100.0 2.9E-33 9.9E-38 321.1 18.8 195 826-1064 40-242 (290)
99 2bbs_A Cystic fibrosis transme 100.0 2.3E-33 7.8E-38 322.0 17.3 194 135-382 52-246 (290)
100 3g5u_A MCG1178, multidrug resi 100.0 2.7E-32 9.2E-37 371.7 20.4 210 134-383 1046-1258(1284)
101 3bk7_A ABC transporter ATP-bin 100.0 4.4E-30 1.5E-34 322.8 21.1 191 136-383 371-563 (607)
102 1yqt_A RNAse L inhibitor; ATP- 100.0 5.4E-30 1.8E-34 319.2 19.3 191 136-383 301-493 (538)
103 3ozx_A RNAse L inhibitor; ATP 100.0 1.6E-29 5.4E-34 314.0 20.7 192 136-382 283-476 (538)
104 3j16_B RLI1P; ribosome recycli 100.0 3.8E-29 1.3E-33 313.6 20.5 192 135-383 361-559 (608)
105 1tf7_A KAIC; homohexamer, hexa 100.0 4.6E-32 1.6E-36 339.2 -6.0 155 859-1055 275-443 (525)
106 2iw3_A Elongation factor 3A; a 100.0 1.7E-28 5.6E-33 317.3 21.7 193 826-1064 435-630 (986)
107 3ux8_A Excinuclease ABC, A sub 100.0 2E-28 6.9E-33 315.1 14.2 205 852-1065 31-294 (670)
108 3pih_A Uvrabc system protein A 99.9 4.5E-24 1.5E-28 276.4 23.5 110 267-383 784-902 (916)
109 2r6f_A Excinuclease ABC subuni 99.9 1.3E-24 4.4E-29 278.5 17.8 107 268-382 825-941 (972)
110 2ygr_A Uvrabc system protein A 99.9 4.2E-24 1.4E-28 274.8 18.0 108 268-383 843-960 (993)
111 2vf7_A UVRA2, excinuclease ABC 99.9 4E-24 1.4E-28 274.7 17.6 108 267-382 709-826 (842)
112 2npi_A Protein CLP1; CLP1-PCF1 99.9 3.8E-26 1.3E-30 278.1 -3.0 186 138-382 129-337 (460)
113 4aby_A DNA repair protein RECN 99.9 1.8E-23 6.1E-28 254.7 16.6 202 853-1060 49-379 (415)
114 2npi_A Protein CLP1; CLP1-PCF1 99.9 6.5E-26 2.2E-30 276.0 -8.5 196 856-1077 129-350 (460)
115 4aby_A DNA repair protein RECN 99.9 4.8E-23 1.6E-27 250.9 14.3 237 134-376 48-381 (415)
116 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6E-21 2E-25 227.2 18.5 81 976-1059 277-363 (365)
117 3b85_A Phosphate starvation-in 99.8 2.1E-24 7E-29 236.1 -10.8 143 851-1039 12-159 (208)
118 1e69_A Chromosome segregation 99.8 3.3E-21 1.1E-25 226.1 13.5 87 976-1065 217-309 (322)
119 4gp7_A Metallophosphoesterase; 99.8 2.8E-22 9.5E-27 213.2 3.0 143 857-1039 1-160 (171)
120 3b85_A Phosphate starvation-in 99.8 5E-23 1.7E-27 225.1 -4.7 160 129-370 8-170 (208)
121 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 2.9E-20 9.9E-25 221.3 15.9 84 288-374 275-364 (365)
122 2v9p_A Replication protein E1; 99.8 5.6E-23 1.9E-27 236.0 -10.8 158 134-388 113-271 (305)
123 1tq4_A IIGP1, interferon-induc 99.8 2.8E-22 9.4E-27 239.7 -6.1 172 134-365 36-248 (413)
124 1e69_A Chromosome segregation 99.8 2.7E-20 9.3E-25 218.4 10.0 88 289-380 216-310 (322)
125 1tq4_A IIGP1, interferon-induc 99.8 9E-23 3.1E-27 243.9 -14.0 170 852-1049 36-247 (413)
126 1znw_A Guanylate kinase, GMP k 99.8 3E-23 1E-27 227.8 -18.1 183 852-1056 9-205 (207)
127 1ye8_A Protein THEP1, hypothet 99.8 1.9E-20 6.5E-25 199.9 3.8 148 867-1063 2-162 (178)
128 4gp7_A Metallophosphoesterase; 99.8 2.9E-20 9.9E-25 197.6 4.8 66 292-359 83-164 (171)
129 1ye8_A Protein THEP1, hypothet 99.8 1.8E-20 6E-25 200.1 1.3 149 149-374 2-159 (178)
130 3b9q_A Chloroplast SRP recepto 99.7 1.1E-19 3.8E-24 209.9 0.1 174 137-372 90-284 (302)
131 3sop_A Neuronal-specific septi 99.7 7.1E-20 2.4E-24 208.5 -2.9 144 149-350 4-147 (270)
132 2o5v_A DNA replication and rep 99.7 7.4E-18 2.5E-22 198.5 13.4 86 287-381 259-354 (359)
133 3sop_A Neuronal-specific septi 99.7 3.5E-20 1.2E-24 211.1 -6.6 147 867-1038 4-150 (270)
134 3b9q_A Chloroplast SRP recepto 99.7 1.5E-19 5.2E-24 208.8 -2.8 154 855-1037 90-256 (302)
135 1z6g_A Guanylate kinase; struc 99.7 5.7E-21 2E-25 211.2 -15.2 173 135-369 11-193 (218)
136 2v9p_A Replication protein E1; 99.7 2.7E-21 9.4E-26 221.9 -18.9 169 827-1078 102-271 (305)
137 3qkt_A DNA double-strand break 99.7 5E-17 1.7E-21 191.9 16.8 76 976-1053 246-327 (339)
138 2og2_A Putative signal recogni 99.7 9.1E-19 3.1E-23 205.8 1.6 173 138-372 148-341 (359)
139 1znw_A Guanylate kinase, GMP k 99.7 1.4E-20 4.7E-25 206.6 -13.3 184 134-368 9-202 (207)
140 1z6g_A Guanylate kinase; struc 99.7 1.6E-21 5.5E-26 215.7 -21.2 176 853-1049 11-204 (218)
141 2pt7_A CAG-ALFA; ATPase, prote 99.7 7.8E-19 2.7E-23 205.8 0.2 131 854-1056 160-291 (330)
142 2dpy_A FLII, flagellum-specifi 99.7 1.9E-19 6.5E-24 218.0 -5.5 180 133-381 144-342 (438)
143 2og2_A Putative signal recogni 99.7 8.4E-19 2.9E-23 206.1 -2.1 153 856-1037 148-313 (359)
144 2o5v_A DNA replication and rep 99.7 5.4E-17 1.9E-21 191.1 11.8 81 976-1065 262-352 (359)
145 3aez_A Pantothenate kinase; tr 99.7 3.7E-18 1.3E-22 198.2 -0.0 128 139-325 81-209 (312)
146 2pt7_A CAG-ALFA; ATPase, prote 99.7 6.1E-18 2.1E-22 198.2 1.4 132 136-372 160-292 (330)
147 1cr0_A DNA primase/helicase; R 99.7 9.9E-18 3.4E-22 194.4 1.6 183 853-1056 23-236 (296)
148 3qkt_A DNA double-strand break 99.7 8E-16 2.7E-20 181.6 17.9 81 288-371 244-332 (339)
149 2dpy_A FLII, flagellum-specifi 99.7 9.4E-19 3.2E-23 212.0 -7.6 174 852-1064 145-339 (438)
150 4ad8_A DNA repair protein RECN 99.6 3.7E-16 1.3E-20 194.9 12.0 78 289-370 393-473 (517)
151 1cr0_A DNA primase/helicase; R 99.6 4.4E-17 1.5E-21 188.9 3.3 185 134-372 22-237 (296)
152 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 6.6E-16 2.2E-20 158.9 11.2 76 976-1053 55-136 (148)
153 2jeo_A Uridine-cytidine kinase 99.6 1.1E-16 3.8E-21 180.2 4.2 179 132-385 10-189 (245)
154 3aez_A Pantothenate kinase; tr 99.6 9.5E-18 3.3E-22 194.7 -5.4 158 862-1054 87-244 (312)
155 2jeo_A Uridine-cytidine kinase 99.6 2.3E-17 7.8E-22 185.9 -4.3 156 850-1038 10-165 (245)
156 2o8b_B DNA mismatch repair pro 99.6 1.6E-16 5.6E-21 209.7 2.3 157 852-1063 769-936 (1022)
157 3thx_A DNA mismatch repair pro 99.6 1.8E-15 6.3E-20 197.2 11.3 149 851-1064 648-808 (934)
158 2ehv_A Hypothetical protein PH 99.6 1.3E-16 4.5E-21 179.8 0.0 163 860-1054 25-207 (251)
159 3thx_A DNA mismatch repair pro 99.6 2.1E-15 7.3E-20 196.6 9.7 89 291-381 720-811 (934)
160 2eyu_A Twitching motility prot 99.6 4.4E-16 1.5E-20 176.3 2.5 132 853-1054 15-147 (261)
161 1tf7_A KAIC; homohexamer, hexa 99.6 4.8E-15 1.7E-19 185.2 10.4 155 141-371 275-444 (525)
162 2obl_A ESCN; ATPase, hydrolase 99.5 3.6E-16 1.2E-20 183.8 -0.8 181 133-381 58-253 (347)
163 2obl_A ESCN; ATPase, hydrolase 99.5 2.9E-16 1E-20 184.6 -2.5 175 852-1064 59-250 (347)
164 4a74_A DNA repair and recombin 99.5 1.3E-15 4.3E-20 169.4 2.6 154 142-371 20-201 (231)
165 3thx_B DNA mismatch repair pro 99.5 4.9E-15 1.7E-19 192.5 8.1 144 851-1048 659-804 (918)
166 4a74_A DNA repair and recombin 99.5 7.7E-16 2.6E-20 171.1 0.4 152 860-1055 20-200 (231)
167 3asz_A Uridine kinase; cytidin 99.5 4.9E-17 1.7E-21 178.6 -11.6 145 862-1038 3-161 (211)
168 3asz_A Uridine kinase; cytidin 99.5 4.5E-16 1.5E-20 171.0 -4.2 144 144-351 3-159 (211)
169 2o8b_B DNA mismatch repair pro 99.5 2E-15 7E-20 199.3 0.8 160 134-380 769-939 (1022)
170 2i3b_A HCR-ntpase, human cance 99.5 2.2E-16 7.6E-21 169.8 -7.4 159 147-376 1-169 (189)
171 1ewq_A DNA mismatch repair pro 99.5 6.7E-15 2.3E-19 188.8 4.7 133 852-1046 566-704 (765)
172 1pzn_A RAD51, DNA repair and r 99.5 2E-15 6.8E-20 178.4 -0.6 169 135-378 118-310 (349)
173 2qnr_A Septin-2, protein NEDD5 99.5 3.6E-16 1.2E-20 181.1 -7.3 156 851-1039 10-168 (301)
174 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 5.4E-14 1.9E-18 144.6 9.7 83 287-372 52-142 (148)
175 2ehv_A Hypothetical protein PH 99.5 3.9E-15 1.3E-19 167.7 1.0 168 137-368 19-206 (251)
176 2qnr_A Septin-2, protein NEDD5 99.5 1.7E-15 6E-20 175.4 -2.5 157 132-354 9-167 (301)
177 2eyu_A Twitching motility prot 99.5 7.4E-15 2.5E-19 166.2 2.0 133 135-369 15-147 (261)
178 1wb9_A DNA mismatch repair pro 99.5 1E-14 3.6E-19 188.1 3.4 154 852-1061 595-750 (800)
179 3thx_B DNA mismatch repair pro 99.5 4.2E-14 1.4E-18 183.9 8.8 80 291-373 734-815 (918)
180 1w1w_A Structural maintenance 99.5 1.6E-13 5.5E-18 167.4 13.3 75 291-368 332-410 (430)
181 1rj9_A FTSY, signal recognitio 99.5 3.2E-15 1.1E-19 172.7 -2.3 149 864-1039 101-259 (304)
182 1rj9_A FTSY, signal recognitio 99.4 8.2E-15 2.8E-19 169.3 0.3 148 146-353 101-257 (304)
183 3szr_A Interferon-induced GTP- 99.4 3.5E-15 1.2E-19 188.7 -3.2 165 150-383 48-237 (608)
184 1pzn_A RAD51, DNA repair and r 99.4 2.6E-15 8.7E-20 177.4 -4.3 164 854-1062 119-308 (349)
185 1ewq_A DNA mismatch repair pro 99.4 3.1E-14 1E-18 182.7 3.8 132 134-361 566-704 (765)
186 1nlf_A Regulatory protein REPA 99.4 1.6E-13 5.4E-18 157.6 9.4 151 861-1039 26-182 (279)
187 3jvv_A Twitching mobility prot 99.4 2.4E-14 8.2E-19 168.8 0.9 128 861-1055 119-246 (356)
188 2w0m_A SSO2452; RECA, SSPF, un 99.4 2.4E-14 8.2E-19 159.2 0.7 168 853-1055 10-192 (235)
189 2w0m_A SSO2452; RECA, SSPF, un 99.4 4E-13 1.4E-17 149.2 10.6 77 293-370 104-192 (235)
190 2i3b_A HCR-ntpase, human cance 99.4 1.1E-15 3.7E-20 164.4 -10.4 160 865-1064 1-171 (189)
191 1nlf_A Regulatory protein REPA 99.4 5.5E-13 1.9E-17 153.0 9.6 153 143-356 26-183 (279)
192 1wb9_A DNA mismatch repair pro 99.4 1.1E-13 3.7E-18 178.7 4.1 156 134-376 595-751 (800)
193 3kta_B Chromosome segregation 99.4 1.3E-12 4.3E-17 138.0 10.6 85 976-1063 62-152 (173)
194 1pui_A ENGB, probable GTP-bind 99.3 3.3E-14 1.1E-18 155.5 -2.8 179 827-1030 4-202 (210)
195 2qag_C Septin-7; cell cycle, c 99.3 3.4E-14 1.2E-18 170.5 -3.5 162 827-1038 12-177 (418)
196 4ad8_A DNA repair protein RECN 99.3 1.1E-12 3.7E-17 163.6 9.6 76 977-1055 395-473 (517)
197 3szr_A Interferon-induced GTP- 99.3 8.6E-14 2.9E-18 176.1 -1.8 159 868-1063 48-231 (608)
198 1lw7_A Transcriptional regulat 99.3 3.5E-15 1.2E-19 178.1 -15.4 164 136-368 157-342 (365)
199 2cvh_A DNA repair and recombin 99.3 1.3E-11 4.4E-16 135.9 13.5 153 854-1055 8-185 (220)
200 1s96_A Guanylate kinase, GMP k 99.3 2.1E-13 7.3E-18 150.1 -0.8 148 143-386 12-163 (219)
201 2qag_C Septin-7; cell cycle, c 99.3 5.4E-13 1.9E-17 160.1 2.5 150 132-351 22-175 (418)
202 3jvv_A Twitching mobility prot 99.3 5.1E-13 1.7E-17 157.4 1.0 59 302-370 188-246 (356)
203 1s96_A Guanylate kinase, GMP k 99.3 9.8E-14 3.3E-18 152.8 -4.9 127 860-1039 11-141 (219)
204 2qag_B Septin-6, protein NEDD5 99.3 2.2E-13 7.5E-18 162.5 -2.3 167 855-1037 30-218 (427)
205 2bdt_A BH3686; alpha-beta prot 99.3 1.9E-14 6.6E-19 155.0 -10.7 169 147-381 2-182 (189)
206 3kta_B Chromosome segregation 99.3 2.3E-11 7.8E-16 128.3 12.6 89 290-382 62-157 (173)
207 1zp6_A Hypothetical protein AT 99.2 1E-12 3.6E-17 141.5 0.5 140 144-337 6-146 (191)
208 1htw_A HI0065; nucleotide-bind 99.2 3.2E-13 1.1E-17 140.7 -3.5 78 134-218 20-97 (158)
209 2cvh_A DNA repair and recombin 99.2 1.5E-11 5.2E-16 135.3 9.7 77 293-370 85-185 (220)
210 2ewv_A Twitching motility prot 99.2 1.7E-12 5.7E-17 154.6 1.1 131 854-1053 127-257 (372)
211 2bdt_A BH3686; alpha-beta prot 99.2 1.5E-14 5.2E-19 155.9 -15.0 167 865-1065 2-180 (189)
212 2bbw_A Adenylate kinase 4, AK4 99.2 2.7E-13 9.1E-18 152.7 -5.5 155 146-340 26-198 (246)
213 2f1r_A Molybdopterin-guanine d 99.2 2.3E-13 8E-18 143.6 -5.6 138 148-340 3-161 (171)
214 2gza_A Type IV secretion syste 99.2 4.2E-12 1.5E-16 150.7 3.4 65 136-203 164-230 (361)
215 1zp6_A Hypothetical protein AT 99.2 1E-13 3.5E-18 149.4 -9.6 142 862-1025 6-148 (191)
216 3auy_A DNA double-strand break 99.2 4.3E-11 1.5E-15 142.9 11.6 78 976-1056 278-362 (371)
217 1pui_A ENGB, probable GTP-bind 99.2 4.8E-13 1.7E-17 146.2 -5.4 67 270-340 131-198 (210)
218 2gza_A Type IV secretion syste 99.2 3E-12 1E-16 151.9 1.0 138 854-1056 164-303 (361)
219 1nij_A Hypothetical protein YJ 99.1 1.2E-14 4E-19 169.9 -22.3 163 866-1047 5-197 (318)
220 2qag_B Septin-6, protein NEDD5 99.1 6.1E-12 2.1E-16 150.1 0.7 164 133-337 27-203 (427)
221 1n0w_A DNA repair protein RAD5 99.1 3.7E-11 1.3E-15 134.4 6.8 61 309-370 118-209 (243)
222 1n0w_A DNA repair protein RAD5 99.1 2.8E-11 9.5E-16 135.4 5.5 152 860-1055 19-209 (243)
223 2ewv_A Twitching motility prot 99.1 8E-13 2.7E-17 157.3 -7.9 168 136-326 127-317 (372)
224 2yhs_A FTSY, cell division pro 99.1 4.4E-12 1.5E-16 152.9 -1.9 81 137-220 283-372 (503)
225 2rcn_A Probable GTPase ENGC; Y 99.1 1E-11 3.6E-16 145.3 1.3 122 136-307 205-328 (358)
226 1lw7_A Transcriptional regulat 99.1 2.6E-13 8.8E-18 161.9 -12.8 162 855-1053 158-342 (365)
227 2bbw_A Adenylate kinase 4, AK4 99.1 1.7E-13 5.9E-18 154.2 -13.8 147 864-1027 26-199 (246)
228 2rcn_A Probable GTPase ENGC; Y 99.1 2.7E-11 9.3E-16 141.8 4.2 138 856-1025 207-345 (358)
229 1odf_A YGR205W, hypothetical 3 99.1 1.5E-11 5.3E-16 141.0 1.7 134 145-327 29-169 (290)
230 1nij_A Hypothetical protein YJ 99.1 2.1E-13 7.2E-18 159.3 -15.0 164 147-362 4-197 (318)
231 1w1w_A Structural maintenance 99.1 1.6E-10 5.5E-15 140.8 9.9 76 977-1054 332-411 (430)
232 3e70_C DPA, signal recognition 99.0 2.3E-11 8E-16 141.7 0.6 74 144-220 126-208 (328)
233 2kjq_A DNAA-related protein; s 99.0 1E-10 3.4E-15 120.8 5.2 45 994-1039 81-126 (149)
234 1udx_A The GTP-binding protein 99.0 6.9E-12 2.4E-16 150.4 -4.1 170 855-1049 147-319 (416)
235 2yhs_A FTSY, cell division pro 99.0 2.2E-11 7.4E-16 146.9 -0.4 153 856-1037 284-448 (503)
236 1udx_A The GTP-binding protein 99.0 1.9E-11 6.3E-16 146.7 -1.5 170 137-364 147-319 (416)
237 1htw_A HI0065; nucleotide-bind 99.0 1.2E-11 4.2E-16 128.7 -3.0 78 852-935 20-97 (158)
238 2f1r_A Molybdopterin-guanine d 99.0 2.1E-12 7.1E-17 136.3 -9.6 139 866-1029 3-164 (171)
239 2qm8_A GTPase/ATPase; G protei 99.0 3.8E-12 1.3E-16 149.5 -8.5 181 134-340 42-260 (337)
240 2oap_1 GSPE-2, type II secreti 99.0 4.5E-12 1.6E-16 156.3 -9.9 84 135-221 248-331 (511)
241 1p9r_A General secretion pathw 99.0 1.2E-11 4.3E-16 148.5 -6.7 137 134-315 156-314 (418)
242 2yv5_A YJEQ protein; hydrolase 99.0 1.6E-10 5.4E-15 133.8 2.8 124 145-305 163-300 (302)
243 3auy_A DNA double-strand break 99.0 1.3E-09 4.4E-14 130.1 10.7 98 267-368 244-359 (371)
244 2qm8_A GTPase/ATPase; G protei 98.9 2.9E-12 9.8E-17 150.6 -12.2 164 852-1025 42-259 (337)
245 3ec2_A DNA replication protein 98.9 3.4E-10 1.2E-14 120.7 4.6 48 993-1040 97-145 (180)
246 1odf_A YGR205W, hypothetical 3 98.9 4.7E-11 1.6E-15 137.0 -2.4 128 863-1013 29-169 (290)
247 3e70_C DPA, signal recognition 98.9 2.8E-11 9.6E-16 141.0 -4.3 144 862-1038 126-279 (328)
248 3ec2_A DNA replication protein 98.9 1.2E-10 4.1E-15 124.2 0.4 48 308-356 98-146 (180)
249 1lvg_A Guanylate kinase, GMP k 98.9 5.5E-13 1.9E-17 144.9 -18.4 57 303-369 116-173 (198)
250 3lda_A DNA repair protein RAD5 98.9 6.3E-10 2.2E-14 132.9 5.2 152 860-1055 173-363 (400)
251 2oap_1 GSPE-2, type II secreti 98.9 5.3E-12 1.8E-16 155.7 -14.4 178 852-1046 247-457 (511)
252 3c8u_A Fructokinase; YP_612366 98.8 5.1E-11 1.8E-15 130.3 -6.2 30 144-173 19-48 (208)
253 2yv5_A YJEQ protein; hydrolase 98.8 1.3E-10 4.3E-15 134.6 -3.7 122 862-992 162-301 (302)
254 1sxj_E Activator 1 40 kDa subu 98.8 2.2E-09 7.6E-14 127.2 6.3 164 868-1077 39-204 (354)
255 3lda_A DNA repair protein RAD5 98.8 1.9E-08 6.5E-13 120.2 14.1 62 309-371 272-364 (400)
256 2x8a_A Nuclear valosin-contain 98.8 1.4E-11 5E-16 140.5 -12.3 141 134-334 33-189 (274)
257 2kjq_A DNAA-related protein; s 98.8 2.8E-09 9.6E-14 109.9 6.0 34 135-173 29-62 (149)
258 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 6.9E-12 2.4E-16 148.9 -16.6 168 143-379 16-209 (392)
259 1p9r_A General secretion pathw 98.8 1.2E-11 4E-16 148.7 -15.9 133 852-1001 156-314 (418)
260 1in4_A RUVB, holliday junction 98.8 6.2E-11 2.1E-15 139.5 -10.1 156 134-343 31-197 (334)
261 3c8u_A Fructokinase; YP_612366 98.7 5.7E-11 1.9E-15 130.0 -9.9 148 862-1048 19-168 (208)
262 1sq5_A Pantothenate kinase; P- 98.7 3E-10 1E-14 132.0 -5.1 73 145-222 78-155 (308)
263 1u0l_A Probable GTPase ENGC; p 98.7 1.5E-09 5E-14 125.7 0.5 73 143-219 165-259 (301)
264 1sxj_E Activator 1 40 kDa subu 98.7 7.6E-09 2.6E-13 122.6 6.5 135 150-355 39-175 (354)
265 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 6E-11 2.1E-15 140.9 -14.9 171 861-1065 16-209 (392)
266 1t9h_A YLOQ, probable GTPase E 98.6 3.3E-09 1.1E-13 121.9 -0.5 118 860-985 168-302 (307)
267 1t9h_A YLOQ, probable GTPase E 98.6 6.5E-09 2.2E-13 119.5 1.8 72 142-217 168-248 (307)
268 1in4_A RUVB, holliday junction 98.6 3.8E-10 1.3E-14 132.8 -10.3 149 853-1026 32-194 (334)
269 2x8a_A Nuclear valosin-contain 98.6 3.9E-11 1.3E-15 137.0 -18.2 128 852-1007 33-164 (274)
270 1lvg_A Guanylate kinase, GMP k 98.6 7.8E-12 2.7E-16 135.7 -23.4 56 989-1053 116-172 (198)
271 3euj_A Chromosome partition pr 98.6 1.4E-08 4.7E-13 123.3 2.0 54 134-191 17-70 (483)
272 1vma_A Cell division protein F 98.5 5E-08 1.7E-12 112.5 6.5 114 140-340 97-213 (306)
273 2dr3_A UPF0273 protein PH0284; 98.5 2.5E-07 8.6E-12 103.2 11.6 60 309-369 127-196 (247)
274 2dr3_A UPF0273 protein PH0284; 98.5 1.7E-07 5.8E-12 104.6 10.0 60 995-1054 127-196 (247)
275 2r6a_A DNAB helicase, replicat 98.5 2E-07 6.9E-12 114.1 11.5 171 853-1056 191-400 (454)
276 1sq5_A Pantothenate kinase; P- 98.5 1.6E-09 5.6E-14 125.8 -7.5 86 853-940 49-156 (308)
277 3k1j_A LON protease, ATP-depen 98.5 1.3E-08 4.6E-13 129.1 -0.9 159 133-336 46-226 (604)
278 2px0_A Flagellar biosynthesis 98.5 1.6E-07 5.5E-12 108.0 8.1 141 145-374 103-246 (296)
279 1u0l_A Probable GTPase ENGC; p 98.5 1E-08 3.5E-13 118.6 -2.0 100 862-970 166-288 (301)
280 2zr9_A Protein RECA, recombina 98.4 3.3E-07 1.1E-11 107.8 9.7 78 985-1063 126-237 (349)
281 1vma_A Cell division protein F 98.4 5.9E-08 2E-12 111.9 2.6 112 858-1024 97-211 (306)
282 2r6a_A DNAB helicase, replicat 98.4 6.3E-08 2.2E-12 118.6 2.8 182 134-372 190-401 (454)
283 1ls1_A Signal recognition part 98.4 2.9E-07 1E-11 105.9 7.7 118 856-1024 91-209 (295)
284 3tr0_A Guanylate kinase, GMP k 98.4 2E-08 6.9E-13 109.0 -2.7 71 141-218 1-74 (205)
285 1iy2_A ATP-dependent metallopr 98.3 1.3E-09 4.3E-14 124.9 -13.9 76 135-217 63-142 (278)
286 1oix_A RAS-related protein RAB 98.3 1.3E-07 4.5E-12 101.6 2.6 43 293-337 146-188 (191)
287 1ixz_A ATP-dependent metallopr 98.3 2E-09 6.8E-14 121.4 -12.8 47 135-188 39-85 (254)
288 1ls1_A Signal recognition part 98.3 1.3E-06 4.3E-11 100.6 10.0 45 138-187 91-135 (295)
289 2ius_A DNA translocase FTSK; n 98.3 9.2E-09 3.1E-13 125.7 -8.7 165 857-1040 159-344 (512)
290 2px0_A Flagellar biosynthesis 98.3 5.6E-07 1.9E-11 103.5 6.5 158 863-1078 103-265 (296)
291 1oix_A RAS-related protein RAB 98.3 7.2E-08 2.5E-12 103.6 -1.0 38 985-1024 152-189 (191)
292 2ius_A DNA translocase FTSK; n 98.3 1.6E-07 5.4E-12 114.9 1.6 165 140-355 160-343 (512)
293 2zr9_A Protein RECA, recombina 98.2 1.1E-06 3.7E-11 103.4 8.1 31 142-172 56-86 (349)
294 1iy2_A ATP-dependent metallopr 98.2 1.2E-09 4.2E-14 125.0 -16.9 123 853-999 63-190 (278)
295 3hr8_A Protein RECA; alpha and 98.2 9.7E-07 3.3E-11 103.5 7.0 42 142-186 56-98 (356)
296 3tr0_A Guanylate kinase, GMP k 98.2 4.6E-08 1.6E-12 106.2 -4.1 67 859-931 1-70 (205)
297 1ixz_A ATP-dependent metallopr 98.2 1.6E-09 5.6E-14 122.1 -16.5 127 853-1005 39-170 (254)
298 3k1j_A LON protease, ATP-depen 98.2 2.5E-08 8.6E-13 126.6 -7.8 160 851-1023 46-227 (604)
299 3lnc_A Guanylate kinase, GMP k 98.2 4.6E-07 1.6E-11 100.5 2.3 39 135-173 15-54 (231)
300 3euj_A Chromosome partition pr 98.1 2.1E-07 7E-12 113.0 -1.4 51 853-906 18-68 (483)
301 1qhl_A Protein (cell division 98.1 7.7E-08 2.6E-12 105.8 -5.1 59 141-203 22-91 (227)
302 2qtf_A Protein HFLX, GTP-bindi 98.1 3E-06 1E-10 100.3 6.9 158 149-341 181-354 (364)
303 2ce7_A Cell division protein F 98.0 3.2E-06 1.1E-10 103.0 6.6 59 981-1039 93-165 (476)
304 2f9l_A RAB11B, member RAS onco 98.0 2.3E-06 7.7E-11 92.3 4.0 37 987-1025 130-166 (199)
305 4eun_A Thermoresistant glucoki 97.9 4.1E-07 1.4E-11 98.5 -3.7 71 142-219 24-96 (200)
306 2f9l_A RAB11B, member RAS onco 97.9 6.5E-06 2.2E-10 88.7 5.7 38 300-339 129-166 (199)
307 3lnc_A Guanylate kinase, GMP k 97.9 2.4E-06 8.3E-11 94.6 2.3 38 853-890 15-53 (231)
308 3hr8_A Protein RECA; alpha and 97.9 8.7E-06 3E-10 95.4 7.0 29 860-888 56-84 (356)
309 2qtf_A Protein HFLX, GTP-bindi 97.9 4.4E-06 1.5E-10 98.8 4.5 151 864-1026 177-353 (364)
310 2ce7_A Cell division protein F 97.9 1.6E-05 5.5E-10 96.9 9.2 60 295-354 93-164 (476)
311 3kta_A Chromosome segregation 97.8 7.3E-06 2.5E-10 86.9 3.6 36 138-174 18-53 (182)
312 4eun_A Thermoresistant glucoki 97.8 8.3E-07 2.8E-11 96.1 -4.3 40 860-905 24-63 (200)
313 2xau_A PRE-mRNA-splicing facto 97.8 6.6E-06 2.3E-10 106.8 3.2 76 976-1052 188-265 (773)
314 4a1f_A DNAB helicase, replicat 97.8 1.7E-05 5.8E-10 92.3 5.5 126 854-1034 35-162 (338)
315 2j41_A Guanylate kinase; GMP, 97.8 8.2E-06 2.8E-10 88.3 2.6 32 143-174 2-33 (207)
316 1zu4_A FTSY; GTPase, signal re 97.7 4.8E-06 1.6E-10 96.7 -0.0 81 136-219 94-187 (320)
317 4e22_A Cytidylate kinase; P-lo 97.7 1.1E-06 3.8E-11 98.8 -5.3 75 136-216 19-113 (252)
318 4a1f_A DNAB helicase, replicat 97.7 3E-05 1E-09 90.3 6.5 129 133-348 32-160 (338)
319 2e87_A Hypothetical protein PH 97.7 8.4E-05 2.9E-09 87.9 10.4 61 977-1039 230-293 (357)
320 3a00_A Guanylate kinase, GMP k 97.7 9.1E-06 3.1E-10 86.7 1.8 27 147-173 1-27 (186)
321 3bh0_A DNAB-like replicative h 97.7 6.1E-05 2.1E-09 87.4 8.5 34 854-887 57-90 (315)
322 2dhr_A FTSH; AAA+ protein, hex 97.7 8.8E-07 3E-11 108.6 -7.4 49 135-190 54-102 (499)
323 1qhl_A Protein (cell division 97.7 7.8E-07 2.7E-11 97.8 -7.2 59 859-920 22-91 (227)
324 3uie_A Adenylyl-sulfate kinase 97.6 2.4E-06 8.3E-11 92.4 -3.9 52 134-189 12-65 (200)
325 3vaa_A Shikimate kinase, SK; s 97.6 2.7E-05 9.1E-10 84.0 3.2 39 133-171 11-49 (199)
326 2xau_A PRE-mRNA-splicing facto 97.6 5.1E-05 1.7E-09 98.5 6.2 73 291-364 189-262 (773)
327 3nwj_A ATSK2; P loop, shikimat 97.5 6.3E-06 2.2E-10 92.1 -2.9 52 826-889 17-72 (250)
328 1kgd_A CASK, peripheral plasma 97.5 3.2E-05 1.1E-09 82.1 2.0 37 146-184 4-40 (180)
329 2dhr_A FTSH; AAA+ protein, hex 97.4 7.6E-07 2.6E-11 109.1 -12.9 129 853-1007 54-187 (499)
330 1jjv_A Dephospho-COA kinase; P 97.4 2.4E-05 8.3E-10 84.7 0.1 70 980-1053 61-131 (206)
331 1ega_A Protein (GTP-binding pr 97.4 0.00016 5.4E-09 83.3 6.9 151 865-1049 8-169 (301)
332 1fnn_A CDC6P, cell division co 97.4 0.00026 9.1E-09 84.2 8.8 44 995-1039 124-170 (389)
333 3bh0_A DNAB-like replicative h 97.4 0.00027 9.2E-09 82.0 8.6 124 133-343 54-179 (315)
334 3vaa_A Shikimate kinase, SK; s 97.4 5.9E-05 2E-09 81.3 2.8 39 851-889 11-49 (199)
335 2dy1_A Elongation factor G; tr 97.3 5E-05 1.7E-09 97.0 2.1 29 860-888 4-32 (665)
336 3t34_A Dynamin-related protein 97.3 2.3E-05 7.9E-10 92.8 -1.1 43 134-182 24-68 (360)
337 3nwj_A ATSK2; P loop, shikimat 97.3 1.6E-05 5.3E-10 88.9 -2.5 40 133-172 31-73 (250)
338 2vp4_A Deoxynucleoside kinase; 97.3 6.8E-05 2.3E-09 82.8 2.6 39 143-188 16-54 (230)
339 3kta_A Chromosome segregation 97.3 8E-05 2.7E-09 78.8 2.7 32 856-888 18-49 (182)
340 3b9p_A CG5977-PA, isoform A; A 97.3 0.00081 2.8E-08 77.0 11.3 70 980-1049 97-183 (297)
341 3t34_A Dynamin-related protein 97.3 0.0003 1E-08 83.2 7.8 57 979-1036 155-212 (360)
342 1v5w_A DMC1, meiotic recombina 97.2 0.00084 2.9E-08 78.7 10.9 140 860-1038 117-274 (343)
343 3tau_A Guanylate kinase, GMP k 97.2 0.00014 4.7E-09 79.0 3.6 29 145-173 6-34 (208)
344 1rz3_A Hypothetical protein rb 97.2 7.8E-05 2.7E-09 80.5 1.2 41 144-187 19-59 (201)
345 4e22_A Cytidylate kinase; P-lo 97.2 2.8E-05 9.7E-10 87.2 -2.4 57 863-921 25-96 (252)
346 1jjv_A Dephospho-COA kinase; P 97.2 0.00066 2.2E-08 73.3 8.5 70 293-368 60-131 (206)
347 1zu4_A FTSY; GTPase, signal re 97.2 4.3E-05 1.5E-09 88.7 -1.0 50 854-905 94-143 (320)
348 3ney_A 55 kDa erythrocyte memb 97.2 0.00013 4.4E-09 78.2 2.7 28 145-172 17-44 (197)
349 3a00_A Guanylate kinase, GMP k 97.2 9.1E-05 3.1E-09 78.9 1.5 26 865-890 1-26 (186)
350 2j41_A Guanylate kinase; GMP, 97.2 0.00012 4E-09 79.1 2.4 29 861-889 2-30 (207)
351 1svm_A Large T antigen; AAA+ f 97.2 5.2E-05 1.8E-09 89.7 -0.5 44 134-183 156-199 (377)
352 2vp4_A Deoxynucleoside kinase; 97.2 6.2E-05 2.1E-09 83.2 0.1 41 859-905 14-54 (230)
353 1kgd_A CASK, peripheral plasma 97.2 0.00012 4E-09 77.6 2.2 36 864-900 4-39 (180)
354 1knq_A Gluconate kinase; ALFA/ 97.2 0.00013 4.6E-09 76.6 2.6 36 145-187 6-41 (175)
355 2e87_A Hypothetical protein PH 97.2 0.00088 3E-08 79.1 9.9 56 292-350 231-287 (357)
356 2z43_A DNA repair and recombin 97.1 0.0016 5.5E-08 75.7 11.4 36 136-171 95-131 (324)
357 2z43_A DNA repair and recombin 97.1 0.00094 3.2E-08 77.7 9.2 139 860-1038 102-258 (324)
358 3b9p_A CG5977-PA, isoform A; A 97.1 0.0028 9.6E-08 72.5 13.1 27 145-171 52-78 (297)
359 2dy1_A Elongation factor G; tr 97.1 7.9E-05 2.7E-09 95.2 0.0 48 142-191 4-51 (665)
360 1v5w_A DMC1, meiotic recombina 97.1 0.0026 9E-08 74.5 12.7 34 137-170 111-145 (343)
361 2qt1_A Nicotinamide riboside k 97.1 0.00031 1.1E-08 76.0 4.4 43 143-208 17-59 (207)
362 3cr8_A Sulfate adenylyltranfer 97.0 0.00012 4E-09 90.9 0.0 42 143-187 365-408 (552)
363 3uie_A Adenylyl-sulfate kinase 96.9 0.00011 3.7E-09 79.3 -0.8 48 854-904 14-63 (200)
364 1svm_A Large T antigen; AAA+ f 96.9 0.00012 4E-09 86.7 -0.6 37 853-889 157-193 (377)
365 3tqc_A Pantothenate kinase; bi 96.9 7.1E-05 2.4E-09 86.5 -2.5 38 136-173 75-118 (321)
366 3tau_A Guanylate kinase, GMP k 96.9 0.00032 1.1E-08 76.1 2.6 28 863-890 6-33 (208)
367 1ega_A Protein (GTP-binding pr 96.9 0.0028 9.5E-08 72.9 10.5 65 293-364 101-169 (301)
368 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00052 1.8E-08 70.3 3.9 30 139-169 16-45 (149)
369 2qt1_A Nicotinamide riboside k 96.8 0.00051 1.7E-08 74.3 3.8 29 861-889 17-45 (207)
370 1kag_A SKI, shikimate kinase I 96.8 0.00038 1.3E-08 72.8 2.5 27 146-172 3-29 (173)
371 2q6t_A DNAB replication FORK h 96.8 0.0015 5.1E-08 79.5 8.1 170 854-1054 189-397 (444)
372 2z4s_A Chromosomal replication 96.8 0.001 3.5E-08 80.8 6.5 70 995-1065 193-264 (440)
373 1fnn_A CDC6P, cell division co 96.8 0.0044 1.5E-07 73.5 12.0 29 146-174 41-71 (389)
374 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.00063 2.2E-08 69.6 3.2 28 858-886 17-44 (149)
375 2z4s_A Chromosomal replication 96.7 0.0011 3.7E-08 80.5 5.8 68 309-377 193-262 (440)
376 2qby_A CDC6 homolog 1, cell di 96.6 0.00039 1.3E-08 82.5 0.6 26 863-888 43-68 (386)
377 3ney_A 55 kDa erythrocyte memb 96.6 0.00061 2.1E-08 72.9 2.0 27 863-889 17-43 (197)
378 4fcw_A Chaperone protein CLPB; 96.6 0.0042 1.4E-07 71.4 9.2 29 146-174 46-74 (311)
379 3cf0_A Transitional endoplasmi 96.6 0.0013 4.4E-08 75.7 4.8 29 861-889 45-73 (301)
380 2www_A Methylmalonic aciduria 96.6 0.00055 1.9E-08 80.5 1.5 40 145-187 72-111 (349)
381 2q6t_A DNAB replication FORK h 96.5 0.01 3.5E-07 72.1 12.7 38 134-171 187-224 (444)
382 1knq_A Gluconate kinase; ALFA/ 96.5 0.00074 2.5E-08 70.8 2.2 35 863-903 6-40 (175)
383 2p67_A LAO/AO transport system 96.5 0.00023 8E-09 83.5 -2.0 48 135-185 44-91 (341)
384 1ypw_A Transitional endoplasmi 96.5 0.0016 5.6E-08 84.9 5.5 30 860-889 233-262 (806)
385 2pez_A Bifunctional 3'-phospho 96.5 0.00061 2.1E-08 71.8 1.1 40 145-188 3-44 (179)
386 3kl4_A SRP54, signal recogniti 96.5 0.0043 1.5E-07 74.4 8.5 35 146-183 96-130 (433)
387 3kl4_A SRP54, signal recogniti 96.4 0.0028 9.5E-08 76.0 6.5 50 988-1037 171-223 (433)
388 3cf0_A Transitional endoplasmi 96.4 0.0059 2E-07 70.1 8.9 29 144-172 46-74 (301)
389 1u94_A RECA protein, recombina 96.4 0.022 7.6E-07 66.7 13.8 30 142-171 58-87 (356)
390 2qby_A CDC6 homolog 1, cell di 96.4 0.0012 4.2E-08 78.1 2.9 29 145-173 43-71 (386)
391 4eaq_A DTMP kinase, thymidylat 96.4 0.0011 3.8E-08 73.0 2.3 38 136-173 12-52 (229)
392 1mky_A Probable GTP-binding pr 96.4 0.0026 9E-08 77.2 5.8 71 148-218 181-263 (439)
393 1kag_A SKI, shikimate kinase I 96.3 0.00095 3.3E-08 69.7 1.6 26 864-889 3-28 (173)
394 1cke_A CK, MSSA, protein (cyti 96.3 0.00034 1.1E-08 76.7 -2.1 34 147-183 5-41 (227)
395 3tqc_A Pantothenate kinase; bi 96.3 0.00031 1.1E-08 81.1 -2.4 38 852-889 73-116 (321)
396 2gj8_A MNME, tRNA modification 96.3 0.0031 1E-07 65.9 5.3 27 145-171 2-28 (172)
397 3ice_A Transcription terminati 96.3 0.00063 2.1E-08 79.2 -0.3 32 857-888 166-197 (422)
398 3m6a_A ATP-dependent protease 96.3 0.00057 1.9E-08 85.3 -0.9 47 135-185 97-143 (543)
399 1m7g_A Adenylylsulfate kinase; 96.2 0.00086 3E-08 72.8 0.6 41 144-187 22-64 (211)
400 2b8t_A Thymidine kinase; deoxy 96.2 0.005 1.7E-07 67.2 6.6 53 996-1053 89-150 (223)
401 2gj8_A MNME, tRNA modification 96.2 0.0037 1.2E-07 65.3 5.2 26 863-888 2-27 (172)
402 1rz3_A Hypothetical protein rb 96.2 0.0015 5E-08 70.4 2.1 28 862-889 19-46 (201)
403 3qks_A DNA double-strand break 96.2 0.0026 8.8E-08 68.7 3.9 30 139-169 16-45 (203)
404 3lxx_A GTPase IMAP family memb 96.1 0.029 1E-06 61.8 12.5 26 149-174 31-56 (239)
405 3h4m_A Proteasome-activating n 96.1 0.0058 2E-07 69.3 6.8 27 863-889 49-75 (285)
406 1m2o_B GTP-binding protein SAR 96.1 0.0032 1.1E-07 66.8 4.2 34 136-170 13-46 (190)
407 3qks_A DNA double-strand break 96.0 0.0028 9.5E-08 68.4 3.2 28 858-886 17-44 (203)
408 3bgw_A DNAB-like replicative h 96.0 0.0046 1.6E-07 74.9 5.4 34 854-887 186-219 (444)
409 3llm_A ATP-dependent RNA helic 96.0 0.0013 4.3E-08 72.8 0.4 66 980-1047 162-228 (235)
410 3llm_A ATP-dependent RNA helic 96.0 0.0011 3.8E-08 73.3 -0.1 66 295-363 163-229 (235)
411 2w58_A DNAI, primosome compone 96.0 0.0068 2.3E-07 64.9 6.0 25 148-172 55-79 (202)
412 1y63_A LMAJ004144AAA protein; 95.9 0.0028 9.4E-08 67.2 2.8 32 139-170 2-33 (184)
413 2qor_A Guanylate kinase; phosp 95.9 0.0026 8.8E-08 68.6 2.3 29 144-172 9-37 (204)
414 2qag_A Septin-2, protein NEDD5 95.9 0.00058 2E-08 80.7 -3.1 76 134-218 30-105 (361)
415 1m2o_B GTP-binding protein SAR 95.8 0.0051 1.7E-07 65.3 4.3 35 853-888 12-46 (190)
416 4eaq_A DTMP kinase, thymidylat 95.8 0.0032 1.1E-07 69.3 2.7 35 855-889 13-50 (229)
417 1u94_A RECA protein, recombina 95.8 0.026 8.8E-07 66.2 10.5 28 860-887 58-85 (356)
418 1l8q_A Chromosomal replication 95.8 0.012 4.3E-07 68.0 7.6 46 994-1039 96-142 (324)
419 1f6b_A SAR1; gtpases, N-termin 95.8 0.0019 6.4E-08 69.2 0.6 35 135-170 14-48 (198)
420 1np6_A Molybdopterin-guanine d 95.8 0.0035 1.2E-07 65.8 2.6 40 148-187 7-46 (174)
421 2yvu_A Probable adenylyl-sulfa 95.7 0.0028 9.7E-08 67.1 1.8 30 145-174 11-40 (186)
422 3lxx_A GTPase IMAP family memb 95.7 0.032 1.1E-06 61.5 10.2 42 995-1036 111-154 (239)
423 2i1q_A DNA repair and recombin 95.7 0.025 8.6E-07 65.4 9.6 28 860-887 93-120 (322)
424 2b8t_A Thymidine kinase; deoxy 95.7 0.017 5.9E-07 63.0 7.7 53 310-368 89-150 (223)
425 1l8q_A Chromosomal replication 95.7 0.0055 1.9E-07 71.1 4.0 26 147-172 37-62 (324)
426 2ffh_A Protein (FFH); SRP54, s 95.6 0.0033 1.1E-07 75.3 2.0 45 138-187 91-135 (425)
427 3d8b_A Fidgetin-like protein 1 95.6 0.03 1E-06 65.9 10.2 26 863-888 115-140 (357)
428 2ohf_A Protein OLA1, GTP-bindi 95.6 0.004 1.4E-07 73.6 2.7 30 141-170 16-45 (396)
429 2w58_A DNAI, primosome compone 95.6 0.016 5.4E-07 62.0 7.2 23 866-888 55-77 (202)
430 3cr8_A Sulfate adenylyltranfer 95.6 0.0023 7.8E-08 79.4 0.3 42 861-904 365-408 (552)
431 2p67_A LAO/AO transport system 95.6 0.0018 6.2E-08 75.8 -0.5 37 852-888 43-79 (341)
432 2p5t_B PEZT; postsegregational 95.6 0.0032 1.1E-07 70.5 1.4 41 143-188 28-68 (253)
433 2pez_A Bifunctional 3'-phospho 95.5 0.0045 1.5E-07 65.0 2.4 26 863-888 3-28 (179)
434 1mky_A Probable GTP-binding pr 95.5 0.0078 2.7E-07 73.0 4.9 39 866-904 181-229 (439)
435 3ice_A Transcription terminati 95.5 0.0035 1.2E-07 73.0 1.6 33 139-171 166-198 (422)
436 3h4m_A Proteasome-activating n 95.5 0.022 7.7E-07 64.4 8.3 28 145-172 49-76 (285)
437 1cke_A CK, MSSA, protein (cyti 95.5 0.0047 1.6E-07 67.5 2.2 24 865-888 5-28 (227)
438 2qor_A Guanylate kinase; phosp 95.4 0.005 1.7E-07 66.3 2.2 28 862-889 9-36 (204)
439 1y63_A LMAJ004144AAA protein; 95.4 0.0054 1.8E-07 64.9 2.5 32 857-888 2-33 (184)
440 1j8m_F SRP54, signal recogniti 95.3 0.0023 7.8E-08 73.3 -1.0 45 138-186 89-134 (297)
441 2if2_A Dephospho-COA kinase; a 95.3 0.0068 2.3E-07 65.1 2.8 21 149-169 3-23 (204)
442 3d8b_A Fidgetin-like protein 1 95.3 0.072 2.5E-06 62.6 11.9 27 145-171 115-141 (357)
443 2ga8_A Hypothetical 39.9 kDa p 95.3 0.0018 6.2E-08 75.1 -2.0 37 136-172 11-49 (359)
444 1f6b_A SAR1; gtpases, N-termin 95.2 0.0037 1.3E-07 66.8 0.6 35 853-888 14-48 (198)
445 3cm0_A Adenylate kinase; ATP-b 95.2 0.0091 3.1E-07 62.9 3.5 27 145-171 2-28 (186)
446 1lv7_A FTSH; alpha/beta domain 95.2 0.0073 2.5E-07 67.5 2.9 45 136-187 36-80 (257)
447 3m6a_A ATP-dependent protease 95.1 0.0033 1.1E-07 78.3 -0.2 48 853-903 97-144 (543)
448 2wjg_A FEOB, ferrous iron tran 95.1 0.01 3.6E-07 62.3 3.5 22 149-170 9-30 (188)
449 2www_A Methylmalonic aciduria 95.1 0.0074 2.5E-07 70.8 2.4 26 863-888 72-97 (349)
450 2qag_A Septin-2, protein NEDD5 95.0 0.0026 8.7E-08 75.1 -1.7 31 852-888 30-60 (361)
451 2wji_A Ferrous iron transport 95.0 0.012 4E-07 60.8 3.5 24 149-172 5-28 (165)
452 2v1u_A Cell division control p 95.0 0.018 6.3E-07 67.9 5.7 26 863-888 42-67 (387)
453 2wjg_A FEOB, ferrous iron tran 95.0 0.019 6.6E-07 60.2 5.2 22 867-888 9-30 (188)
454 3bos_A Putative DNA replicatio 95.0 0.016 5.4E-07 63.4 4.6 94 864-1038 51-148 (242)
455 3t61_A Gluconokinase; PSI-biol 94.9 0.0092 3.1E-07 64.0 2.4 25 147-171 18-42 (202)
456 1qhx_A CPT, protein (chloramph 94.9 0.011 3.7E-07 61.8 2.9 26 147-172 3-28 (178)
457 1xwi_A SKD1 protein; VPS4B, AA 94.8 0.13 4.3E-06 59.5 12.1 119 863-1052 43-176 (322)
458 3kb2_A SPBC2 prophage-derived 94.8 0.013 4.6E-07 60.6 3.2 24 149-172 3-26 (173)
459 3cmw_A Protein RECA, recombina 94.7 0.043 1.5E-06 75.7 8.8 30 143-172 728-757 (1706)
460 2if2_A Dephospho-COA kinase; a 94.7 0.0089 3E-07 64.1 1.8 21 867-887 3-23 (204)
461 1q57_A DNA primase/helicase; d 94.7 0.11 3.7E-06 64.1 11.7 69 985-1054 341-441 (503)
462 2wji_A Ferrous iron transport 94.7 0.013 4.4E-07 60.5 2.8 24 866-889 4-27 (165)
463 1sxj_C Activator 1 40 kDa subu 94.7 0.0033 1.1E-07 73.6 -2.0 41 134-174 31-73 (340)
464 3bgw_A DNAB-like replicative h 94.6 0.039 1.3E-06 66.8 7.3 38 134-171 184-221 (444)
465 1gvn_B Zeta; postsegregational 94.6 0.016 5.4E-07 66.0 3.6 35 146-185 32-66 (287)
466 2qz4_A Paraplegin; AAA+, SPG7, 94.6 0.053 1.8E-06 60.3 7.8 120 862-1053 36-175 (262)
467 2ga8_A Hypothetical 39.9 kDa p 94.6 0.0036 1.2E-07 72.6 -1.9 36 853-888 10-47 (359)
468 1np6_A Molybdopterin-guanine d 94.6 0.013 4.3E-07 61.5 2.4 37 866-902 7-44 (174)
469 2rhm_A Putative kinase; P-loop 94.5 0.015 5.2E-07 61.5 3.0 27 145-171 3-29 (193)
470 1xx6_A Thymidine kinase; NESG, 94.5 0.032 1.1E-06 59.4 5.4 53 996-1053 81-142 (191)
471 1kht_A Adenylate kinase; phosp 94.4 0.018 6.2E-07 60.7 3.4 26 147-172 3-28 (192)
472 2ohf_A Protein OLA1, GTP-bindi 94.4 0.013 4.4E-07 69.3 2.3 45 859-903 16-69 (396)
473 3r20_A Cytidylate kinase; stru 94.4 0.018 6.3E-07 63.1 3.3 24 148-171 10-33 (233)
474 1q57_A DNA primase/helicase; d 94.4 0.26 8.7E-06 60.7 14.0 37 135-171 230-266 (503)
475 1q3t_A Cytidylate kinase; nucl 94.3 0.018 6.2E-07 63.4 3.1 28 144-171 13-40 (236)
476 2yvu_A Probable adenylyl-sulfa 94.3 0.018 6.2E-07 60.8 2.9 28 862-889 10-37 (186)
477 2zej_A Dardarin, leucine-rich 94.3 0.021 7.1E-07 60.0 3.3 23 149-171 4-26 (184)
478 1m7g_A Adenylylsulfate kinase; 94.3 0.014 4.6E-07 63.2 1.9 28 862-889 22-49 (211)
479 2v54_A DTMP kinase, thymidylat 94.2 0.022 7.6E-07 60.8 3.4 26 146-171 3-28 (204)
480 3cm0_A Adenylate kinase; ATP-b 94.2 0.018 6.1E-07 60.6 2.6 25 863-887 2-26 (186)
481 2ze6_A Isopentenyl transferase 94.2 0.021 7.3E-07 63.7 3.3 25 148-172 2-26 (253)
482 3trf_A Shikimate kinase, SK; a 94.2 0.023 7.8E-07 59.8 3.3 26 146-171 4-29 (185)
483 3lw7_A Adenylate kinase relate 94.1 0.023 7.9E-07 58.7 3.2 19 149-167 3-21 (179)
484 1ypw_A Transitional endoplasmi 94.1 0.015 5.1E-07 75.8 2.1 32 142-173 233-264 (806)
485 2plr_A DTMP kinase, probable t 94.1 0.027 9.2E-07 60.4 3.8 28 146-173 3-30 (213)
486 2zej_A Dardarin, leucine-rich 94.1 0.021 7.3E-07 59.9 2.9 22 867-888 4-25 (184)
487 1ly1_A Polynucleotide kinase; 94.0 0.027 9.2E-07 58.7 3.6 22 148-169 3-24 (181)
488 3cmw_A Protein RECA, recombina 94.0 0.24 8.3E-06 68.4 13.5 36 136-171 370-407 (1706)
489 3t61_A Gluconokinase; PSI-biol 94.0 0.019 6.3E-07 61.6 2.2 24 865-888 18-41 (202)
490 1xp8_A RECA protein, recombina 93.9 0.093 3.2E-06 61.6 8.2 118 862-1036 71-209 (366)
491 3iij_A Coilin-interacting nucl 93.9 0.024 8.2E-07 59.4 2.8 26 146-171 10-35 (180)
492 1qhx_A CPT, protein (chloramph 93.9 0.024 8.3E-07 59.1 2.8 25 865-889 3-27 (178)
493 1ex7_A Guanylate kinase; subst 93.8 0.024 8.1E-07 60.1 2.7 24 149-172 3-26 (186)
494 2c95_A Adenylate kinase 1; tra 93.8 0.027 9.2E-07 59.7 3.0 27 145-171 7-33 (196)
495 3kb2_A SPBC2 prophage-derived 93.8 0.024 8.2E-07 58.6 2.6 22 867-888 3-24 (173)
496 2wwf_A Thymidilate kinase, put 93.7 0.03 1E-06 60.2 3.3 27 145-171 8-34 (212)
497 2j9r_A Thymidine kinase; TK1, 93.7 0.096 3.3E-06 56.4 7.1 128 863-1053 26-162 (214)
498 2jaq_A Deoxyguanosine kinase; 93.7 0.032 1.1E-06 59.5 3.3 24 149-172 2-25 (205)
499 1vht_A Dephospho-COA kinase; s 93.6 0.033 1.1E-06 60.4 3.4 24 146-169 3-26 (218)
500 3co5_A Putative two-component 93.6 0.16 5.3E-06 51.1 8.3 42 996-1038 75-116 (143)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.7e-73 Score=777.80 Aligned_cols=215 Identities=27% Similarity=0.373 Sum_probs=180.8
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
..++|+||+++|+. ....++|+|||++|+|||++||+||||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1075 g~I~f~nVsf~Y~~----------~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~d 1142 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPE----------RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSE 1142 (1321)
T ss_dssp CCEEEEEEEECCTT----------SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEE
T ss_pred CeEEEEEEEEeCCC----------CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEE
Confidence 36999999999852 123469999999999999999999999999999999999765 347999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCCC
Q 047682 905 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-------RQSLVGLP 974 (1425)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 974 (1425)
+++ ..+|+.++||||++.+|.. |++|||.|+. .|.+.+++ .++++++..++.+. .|+.+|..
T Consensus 1143 i~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gl---d~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1143 IKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGL---DPSSVTMA----QVEEAARLANIHNFIAELPEGFETRVGDR 1214 (1321)
T ss_dssp TTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSS---CTTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEETTT
T ss_pred hhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccC---CCCCCCHH----HHHHHHHHhCChHHHHcCcCCCCCEecCC
Confidence 754 4578889999999998865 9999997642 12333333 36777888777543 56677754
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
..+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|+++. +|+|+|+++|+++ ....||+|+||++
T Consensus 1215 -G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld~ 1290 (1321)
T 4f4c_A 1215 -GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVSN 1290 (1321)
T ss_dssp -SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEESS
T ss_pred -CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999875 4899999999997 4577999999986
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|+++.+|+.
T Consensus 1291 -G~IvE~Gth 1299 (1321)
T 4f4c_A 1291 -GTIIEKGTH 1299 (1321)
T ss_dssp -SSEEEEECH
T ss_pred -CEEEEECCH
Confidence 689999986
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=5.5e-67 Score=712.15 Aligned_cols=214 Identities=26% Similarity=0.366 Sum_probs=173.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.|+.. .+.++|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 1030 ~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEI 1097 (1284)
T ss_dssp CEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCT
T ss_pred cEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEc
Confidence 59999999988521 12468999999999999999999999999999999999866 3589999999986
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-------ccccccCCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-------LRQSLVGLPG 975 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~~ 975 (1425)
+. ...++.+|||+|++.++ ..||+||+.++... ...+.++ +.+.++..++.+ -.|+.+|..
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge~- 1168 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGDK- 1168 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCSTT-
T ss_pred ccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCC---CCCCHHH----HHHHHHHhCcHHHHHhCccccccccCCC-
Confidence 53 34567899999999776 56999999764311 1223332 344455555433 345666654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
...||||||||++|||+|+++|+||+|||||||||+.+++.|++.|++.. +|+|||+++|+++. + ..||||++|++
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri~vl~~- 1244 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I-QNADLIVVIQN- 1244 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-GSCSEEEEEET-
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH-H-HcCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999998864 59999999999974 4 66999999996
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 1245 G~i~~~g~~ 1253 (1284)
T 3g5u_A 1245 GKVKEHGTH 1253 (1284)
T ss_dssp BEEEEEECH
T ss_pred CEEEEECCH
Confidence 789999985
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.6e-57 Score=568.66 Aligned_cols=202 Identities=23% Similarity=0.286 Sum_probs=165.9
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ + ..|+++|+++++||++||+|||||||||||++|+|...+ .+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC-----
T ss_pred EEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE-----
Confidence 477888876552 1 268899999999999999999999999999999997653 3577654
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
.+.+||++|+....+.+||.|++....... ...++.++++++.+++.+..+..+ ..|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 235899999988778899999886531100 011345788999999988877764 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCEEEEEeC-CcEEEEECC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGYEIYVGP 1063 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fD~v~~l~~-Gg~~~y~G~ 1063 (1425)
||+||++|+.+|++|+|||||+|||+.++..+++.|++++ +.|.|||+++||+. .+...+|++++|++ .|+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9999999999999999999999999999999999999987 46999999999986 57788999999983 256778898
Q ss_pred CCC
Q 047682 1064 LGR 1066 (1425)
Q Consensus 1064 ~~~ 1066 (1425)
+.+
T Consensus 558 p~~ 560 (607)
T 3bk7_A 558 PMG 560 (607)
T ss_dssp CEE
T ss_pred HHH
Confidence 743
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4.5e-57 Score=562.95 Aligned_cols=202 Identities=24% Similarity=0.301 Sum_probs=165.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ + ..|+++|++|++||++||+||||||||||+++|+|..++ .+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE-----
Confidence 477788776552 1 368899999999999999999999999999999997653 3577764
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
.+.+||++|+....+.+||.|++........ . .++.++++++.+++.+..+..+ ..|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL----N---SNFYKTELLKPLGIIDLYDREV-----NELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCC----C---HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 2358999999887788999998864311010 0 1245678899999987777664 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeC-CcEEEEECC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGYEIYVGP 1063 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~-Gg~~~y~G~ 1063 (1425)
||+||++|+.+|++|+|||||+|||..++..+++.|+++++ .|.|||+++||+. ++...||++++|++ .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 99999999999999999999999999999999999999874 5999999999986 57789999999984 256778898
Q ss_pred CCC
Q 047682 1064 LGR 1066 (1425)
Q Consensus 1064 ~~~ 1066 (1425)
+.+
T Consensus 488 ~~~ 490 (538)
T 1yqt_A 488 PMG 490 (538)
T ss_dssp CEE
T ss_pred HHH
Confidence 743
No 5
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=5e-55 Score=563.61 Aligned_cols=184 Identities=18% Similarity=0.233 Sum_probs=148.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCC-CCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHD-VHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 212 (1425)
+.+|+|+|+++++|++++|+||||||||||||+|+| |+| +|.+... ...++|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCcH
Confidence 469999999999999999999999999999999995 222 3333211 12478999973 67889999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-ccccccccCcccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD-VCADTMVGDEMLR 291 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~ 291 (1425)
.|++.+ ...+ . ..+++.+++.+||+ +..+..++
T Consensus 514 ~e~l~~--~~~~----------~-----------------------------~~~v~~~L~~lgL~~~~~~~~~~----- 547 (986)
T 2iw3_A 514 LDFVFE--SGVG----------T-----------------------------KEAIKDKLIEFGFTDEMIAMPIS----- 547 (986)
T ss_dssp HHHHHT--TCSS----------C-----------------------------HHHHHHHHHHTTCCHHHHHSBGG-----
T ss_pred HHHHHH--hhcC----------H-----------------------------HHHHHHHHHHcCCChhhhcCCcc-----
Confidence 999975 1100 0 12356788999995 55665554
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++ .++ +++.++|+..++.++||+|++|++|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~-tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGI-TSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCS-EEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCC-EEEEEECCHHHHHHhCCEEEEEECCe
Confidence 5999999999999999999999999999999999999999999886 244 45557899999999999999999999
Q ss_pred EE-EecChhHHH
Q 047682 372 IV-FQGPREHVL 382 (1425)
Q Consensus 372 iv-~~G~~~~~~ 382 (1425)
++ +.|+.+++.
T Consensus 623 iv~~~G~~~e~~ 634 (986)
T 2iw3_A 623 LRKYKGNFTEFV 634 (986)
T ss_dssp EEEEESCHHHHH
T ss_pred eecCCCCHHHHH
Confidence 97 689887654
No 6
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.1e-55 Score=548.34 Aligned_cols=216 Identities=20% Similarity=0.247 Sum_probs=169.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++..++ + ..|+++|++|++||++||+||||||||||+++|+|..++ .+|+|.+++
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~--- 329 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEK--- 329 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSC---
T ss_pred eEEEcceEEEEC-------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC---
Confidence 467777765542 1 357778999999999999999999999999999997653 478888764
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
+.++|++|+....+..||+|++.+..... ... ....++++++.++|.+..+..+ ..|||||||
T Consensus 330 ------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 330 ------QILSYKPQRIFPNYDGTVQQYLENASKDA--LST----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp ------CCEEEECSSCCCCCSSBHHHHHHHHCSST--TCT----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred ------eeeEeechhcccccCCCHHHHHHHhhhhc--cch----hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 24799999877777899999998742111 011 1234688899999988877764 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCC-cEEEEECC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GYEIYVGP 1063 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~G-g~~~y~G~ 1063 (1425)
||+|||+|+.+|+||+|||||+|||+.++..+++.|+++++ .|.|||+++||++ ++..+||||++|+++ |.....|+
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCC
Confidence 99999999999999999999999999999999999999975 5899999999986 577889999999842 34455555
Q ss_pred CCCCchhHHHHHhhC
Q 047682 1064 LGRHSSHLISYFEAI 1078 (1425)
Q Consensus 1064 ~~~~~~~~~~yf~~~ 1078 (1425)
+......+..|+..+
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhc
Confidence 533223345565544
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=4.3e-54 Score=553.89 Aligned_cols=215 Identities=22% Similarity=0.295 Sum_probs=136.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHH---------------------HHHhcCCCCCCC----cccEEEECCcc
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLL---------------------LALAGKLDPSLK----LSGRVTYNGHN 187 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL---------------------~~L~G~~~~~~~----~~G~V~~~G~~ 187 (1425)
+.++|+|||++|++||+++|+||||||||||+ +++.|...|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34589999999999999999999999999998 888888777621 25677777765
Q ss_pred CCCCCccceEEEEccCCC-------------------CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCC
Q 047682 188 MDEFVPQRTAAYISQHDV-------------------HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDP 248 (1425)
Q Consensus 188 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 248 (1425)
.... +++.++||+|... .++.+||+||+.+....... ..+...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhhHH------
Confidence 5332 2344556655432 24678999999874321100 000000
Q ss_pred ChHHHHHHHhhhhhhhhHHHHHHHHHhCCccc-ccccccCcccccCChhhhhhHHHHHHHhcCCc--EeEEecCCCCCCh
Q 047682 249 DIDVFMKALATEGQEASVVTDYVIKVLGLDVC-ADTMVGDEMLRGISGGQRKRVTTGEMLVGPAL--ALFMDEISTGLDS 325 (1425)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~--illLDEptsgLD~ 325 (1425)
.+. ...+.... ..+++.+||++. .++.++ .|||||||||+|||||+.+|+ +|||||||+|||+
T Consensus 172 -----~~~---~~~~~~~~-~~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -----ARL---ILREIRDR-LGFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -----HHH---HHHHHHHH-HHHHHHcCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 000 00001111 236888999764 455554 599999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE------cCCeEEEecChhHHH
Q 047682 326 STTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI------SEGQIVFQGPREHVL 382 (1425)
Q Consensus 326 ~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 382 (1425)
.++..+++.|+++.+ .+ .+|+.++|+...+ ..||+|++| ++|++++.|+++++.
T Consensus 238 ~~~~~l~~~l~~l~~-~g-~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LG-NTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-TT-CEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 999999999999865 34 4555578887754 569999999 899999999987763
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-54 Score=539.89 Aligned_cols=201 Identities=17% Similarity=0.185 Sum_probs=159.1
Q ss_pred eeeeceeEEEeCC-----eEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCC
Q 047682 853 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNV 927 (1425)
Q Consensus 853 ~iL~~vs~~i~~G-----e~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~l 927 (1425)
.+++|+|+++++| |++||+||||||||||+++|+|..++. +|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC--CCcC------cc----CCcEEEecccccccCCc
Confidence 4688899888888 789999999999999999999976532 4431 11 23589999997776678
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 047682 928 TVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007 (1425)
Q Consensus 928 Tv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTs 1007 (1425)
||+|++... .+. .... ...++++++.++|.+..+..+ ..|||||||||+|||+|+.+|+||+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFLN---PQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTTS---HHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--cccc---HHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987532 221 1111 234678999999998888764 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCEEEEEeCC-cEEEEECCCCCCchhHHHHHhhC
Q 047682 1008 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG-GYEIYVGPLGRHSSHLISYFEAI 1078 (1425)
Q Consensus 1008 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G-g~~~y~G~~~~~~~~~~~yf~~~ 1078 (1425)
|||+.++..+++.|++++ +.|.|||+++||+. ++..++||+++|+++ |+++..|++.+-......+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhc
Confidence 999999999999999986 45999999999986 578889999999852 67889998854322323444444
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=5.4e-41 Score=392.68 Aligned_cols=207 Identities=22% Similarity=0.317 Sum_probs=181.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc------cceEEEEccCCCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP------QRTAAYISQHDVH 206 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~ 206 (1425)
..++|+|||++|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 356999999999999999999999999999999999999998 9999999999876542 3679999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++.+||+||+.|+.+..+.. ..+...+++++|+.+||++.++..++
T Consensus 117 ~~~~TV~env~~~~~~~~~~----------------------------------~~~~~~~v~~lL~~vgL~~~~~~~~~ 162 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTP----------------------------------KDEVKRRVTELLSLVGLGDKHDSYPS 162 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCC----------------------------------HHHHHHHHHHHHHHHTCGGGTTCCTT
T ss_pred CCCCCHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCchHhcCChh
Confidence 99999999999986653311 01223457789999999987776554
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
.|||||||||+|||||+.+|++|||||||||||+.++..|++.|+++.+..+. +|+.++|+..++.++||+|++
T Consensus 163 -----~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~-Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 163 -----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL-TILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp -----TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCC-EEEEEESCHHHHHHHCSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCC-EEEEEecCHHHHHHhCCEEEE
Confidence 59999999999999999999999999999999999999999999999765554 455578999999999999999
Q ss_pred EcCCeEEEecChhHHH
Q 047682 367 ISEGQIVFQGPREHVL 382 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~~ 382 (1425)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999885
No 10
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-40 Score=430.73 Aligned_cols=196 Identities=26% Similarity=0.410 Sum_probs=145.6
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHH---------hhhcCCCC--C--ceEE------EEEEEcCccCCccc-----
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT--G--GYIT------GNIKISGYPKKQET----- 909 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl---------~~l~g~~~--~--~~~~------G~i~i~g~~~~~~~----- 909 (1425)
.|+|||++|++|++++|+|+||||||||+ +.+.+... + .... +.+.+++.+.....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 68999999999999999999999999997 33333211 1 0122 33555544321100
Q ss_pred ---------------------------------------ccceEEEeecCCCCCC-------------------------
Q 047682 910 ---------------------------------------FARISGYCEQNDIHSP------------------------- 925 (1425)
Q Consensus 910 ---------------------------------------~~~~~gyv~Q~~~~~~------------------------- 925 (1425)
..+..||+.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012467777665554
Q ss_pred -------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCC-
Q 047682 926 -------NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP- 997 (1425)
Q Consensus 926 -------~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p- 997 (1425)
.+||.|++.|... . .....+.++++.+||.... .|.+ +..|||||||||.||++|+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 3688888877431 1 1223467889999996532 2222 4579999999999999999875
Q ss_pred --cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe-----CCcEEEEECCC
Q 047682 998 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGYEIYVGPL 1064 (1425)
Q Consensus 998 --~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~-----~Gg~~~y~G~~ 1064 (1425)
+||+|||||+|||+.+...+++.|++++++|.|||+++|+++ ....+|+|++|. +||++++.|++
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCH
Confidence 799999999999999999999999999988999999999985 456799999993 47899999986
No 11
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=7.2e-41 Score=391.63 Aligned_cols=218 Identities=22% Similarity=0.284 Sum_probs=190.5
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++.. .+...+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p--~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 48999999888521 1235799999999999999999999999999999999997663 589999999886
Q ss_pred Ccc------cccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcC
Q 047682 906 KQE------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGL 979 (1425)
Q Consensus 906 ~~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 979 (1425)
... ..++.+||++|++.+++.+||+||+.|....+ ..+.++.+++++++++.+||.+..+.. +..|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSY-----PSNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCC-----TTTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhC
Confidence 431 23567999999999999999999999987654 345666778899999999999888776 4579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEE
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~ 1058 (1425)
||||||||+|||||+.+|++|+|||||||||+.++..+++.|++++++ |.|||++||+++ .+.++||||++|++ |++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999754 999999999986 57789999999996 689
Q ss_pred EEECCC
Q 047682 1059 IYVGPL 1064 (1425)
Q Consensus 1059 ~y~G~~ 1064 (1425)
++.|+.
T Consensus 243 v~~g~~ 248 (366)
T 3tui_C 243 IEQDTV 248 (366)
T ss_dssp EECCBH
T ss_pred EEEcCH
Confidence 999986
No 12
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.4e-40 Score=389.40 Aligned_cols=207 Identities=21% Similarity=0.346 Sum_probs=179.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccC----CCCCc-cceEEEEccCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM----DEFVP-QRTAAYISQHDVHIG 208 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~----~~~~~-~~~~~yv~Q~d~~~~ 208 (1425)
.++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++ ....+ ++.+|||+|+..++|
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999998 99999999987 22222 467999999999999
Q ss_pred CCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 047682 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDE 288 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 288 (1425)
.+||+||+.|+.+..+... .+...+++++++.+||++..|..++
T Consensus 94 ~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~~-- 137 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELAGRYPH-- 137 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGTTSCGG--
T ss_pred CCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHhcCChh--
Confidence 9999999999865432110 1123457789999999988776554
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
.|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..+||+|++|+
T Consensus 138 ---~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g-~tvi~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 138 ---ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANG-KSAVFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTT-CEEEEECCCHHHHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHCCEEEEEE
Confidence 5999999999999999999999999999999999999999998888766554 455558999999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 047682 369 EGQIVFQGPREHVLE 383 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~~ 383 (1425)
+|+++..|+++++.+
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999998853
No 13
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.3e-40 Score=372.31 Aligned_cols=220 Identities=23% Similarity=0.329 Sum_probs=184.5
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++.. ...+.+|+|||++|++||++||+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEcc
Confidence 5778888877421 1134699999999999999999999999999999999997663 5899999998764
Q ss_pred ccc-------ccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccc-ccccCCCCCCc
Q 047682 907 QET-------FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR-QSLVGLPGVSG 978 (1425)
Q Consensus 907 ~~~-------~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~~~g~~~~~~ 978 (1425)
... .++.+||++|++.+++.+||+||+.++...+.......++..+.+.++++.++|.+.. +.. +..
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 311 1245999999999999999999999977654323345566677789999999998743 554 457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ +.+.+|++++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999985 4588999999997 68
Q ss_pred EEEECCCC
Q 047682 1058 EIYVGPLG 1065 (1425)
Q Consensus 1058 ~~y~G~~~ 1065 (1425)
++..|+..
T Consensus 223 i~~~~~~~ 230 (235)
T 3tif_A 223 VEREEKLR 230 (235)
T ss_dssp EEEEEECC
T ss_pred EEEEcChh
Confidence 88888763
No 14
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.6e-40 Score=391.31 Aligned_cols=207 Identities=25% Similarity=0.384 Sum_probs=182.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
.++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999876654 3679999999999999999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.|+.+..+.. ..+.+.+++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~L~~~~~r~p-----~~ 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAK----------------------------------KEVINQRVNQVAEVLQLAHLLDRKP-----KA 133 (381)
T ss_dssp HHHHTHHHHHTTCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTCCG-----GG
T ss_pred HHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhcCCh-----hH
Confidence 99999987654311 0122346788999999998777655 46
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++||||||||+||+..+.++.+.|+++.+..+.| ++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~t-ii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT-MIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCE-EEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCE-EEEEECCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999997655555 45579999999999999999999999
Q ss_pred EEecChhHHHH
Q 047682 373 VFQGPREHVLE 383 (1425)
Q Consensus 373 v~~G~~~~~~~ 383 (1425)
+..|+++++.+
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999998853
No 15
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.7e-40 Score=391.04 Aligned_cols=215 Identities=25% Similarity=0.357 Sum_probs=190.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC--CCeEEEECCEEC
Confidence 378899988773 35799999999999999999999999999999999998763 489999999886
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHH
Q 047682 906 KQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 984 (1425)
.. ...++.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..+.. +..||||||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----p~~LSGGqr 139 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKALSGGQR 139 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCC-----GGGSCHHHH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhHCCHHHH
Confidence 43 233567999999999999999999999987655 345667778899999999999988876 457999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||+|||||+.+|++|+||||||+||+..+..+++.|+++.++ |.|||++||+++ ++..++|||++|++ |+++..|+
T Consensus 140 QRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~ 217 (381)
T 3rlf_A 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (381)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeC
Confidence 9999999999999999999999999999999999999999755 999999999986 68899999999997 68899998
Q ss_pred CC
Q 047682 1064 LG 1065 (1425)
Q Consensus 1064 ~~ 1065 (1425)
+.
T Consensus 218 ~~ 219 (381)
T 3rlf_A 218 PL 219 (381)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 16
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.2e-40 Score=389.87 Aligned_cols=215 Identities=27% Similarity=0.405 Sum_probs=186.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++++++ ++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP--DSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 378899988773 35799999999999999999999999999999999998763 489999999875
Q ss_pred ----Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCC
Q 047682 906 ----KQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 906 ----~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 980 (1425)
.. ...++.+|||+|+..++|.+||+||+.|+...+ ....++.+++++++++.++|.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 21 234567999999999999999999999976443 2344556678999999999999888764 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1059 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~ 1059 (1425)
|||||||+|||||+.+|++|||||||||||+.++..+++.|+++. +.|.|||++|||++ ++..++|||++|++ |+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999887765 46999999999986 68889999999996 6889
Q ss_pred EECCCC
Q 047682 1060 YVGPLG 1065 (1425)
Q Consensus 1060 y~G~~~ 1065 (1425)
..|++.
T Consensus 219 ~~g~~~ 224 (359)
T 3fvq_A 219 QTASPH 224 (359)
T ss_dssp EEECHH
T ss_pred EEeCHH
Confidence 999863
No 17
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.4e-40 Score=378.94 Aligned_cols=216 Identities=25% Similarity=0.375 Sum_probs=186.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++..+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p--~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP--SSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeEEEECCEEC
Confidence 488999998873 224599999999999999999999999999999999997653 489999999886
Q ss_pred C--c---ccccceEEEeecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcC
Q 047682 906 K--Q---ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGL 979 (1425)
Q Consensus 906 ~--~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 979 (1425)
. . ..+++.+||++|++. .+..+||+||+.|+...+ ..+.++.+++++++++.++|.+..+..+ ..|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 3 1 234567999999863 445789999999987543 3456666778999999999998888764 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCEEEEEeCCcEE
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~ 1058 (1425)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ ++|+|||++||+++ .+.+.||++++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999997 47788999999996 688
Q ss_pred EEECCCC
Q 047682 1059 IYVGPLG 1065 (1425)
Q Consensus 1059 ~y~G~~~ 1065 (1425)
++.|+..
T Consensus 223 ~~~g~~~ 229 (275)
T 3gfo_A 223 ILQGNPK 229 (275)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9999863
No 18
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.5e-40 Score=367.46 Aligned_cols=212 Identities=22% Similarity=0.283 Sum_probs=182.2
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 5 LRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP--TEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 78889988763 25699999999999999999999999999999999997653 4899999998764
Q ss_pred cc------ccc-ceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcC
Q 047682 907 QE------TFA-RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGL 979 (1425)
Q Consensus 907 ~~------~~~-~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 979 (1425)
.. .++ +.+||++|++.+++.+||+||+.+....+ ....++.++.++++++.++|.+..+..+ ..|
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (224)
T 2pcj_A 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKP-----YEL 141 (224)
T ss_dssp SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGS
T ss_pred CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 31 122 56999999999999999999999876543 2334445567899999999998877764 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEE
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1059 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~ 1059 (1425)
|||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+ +.+|++++|++ |+++
T Consensus 142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~-G~i~ 218 (224)
T 2pcj_A 142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKD-GKVV 218 (224)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 34 88999999997 6888
Q ss_pred EECCC
Q 047682 1060 YVGPL 1064 (1425)
Q Consensus 1060 y~G~~ 1064 (1425)
+.|+.
T Consensus 219 ~~g~~ 223 (224)
T 2pcj_A 219 GEITR 223 (224)
T ss_dssp EEEEC
T ss_pred EEeee
Confidence 88863
No 19
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3e-40 Score=374.06 Aligned_cols=213 Identities=26% Similarity=0.346 Sum_probs=184.0
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|||++|++||++||+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 25 l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i~ 89 (263)
T 2olj_A 25 IDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF--DEGEIIIDGINLK 89 (263)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEESS
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCEECC
Confidence 88999998773 34699999999999999999999999999999999998653 4899999998763
Q ss_pred --c---ccccceEEEeecCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCC
Q 047682 907 --Q---ETFARISGYCEQNDIHSPNVTVYESLLYSA-WLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 907 --~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 980 (1425)
. ..+++.+||++|++.+++.+||+||+.|.. ..+ ....++.++.++++++.++|.+..+..+ ..||
T Consensus 90 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 161 (263)
T 2olj_A 90 AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSLS 161 (263)
T ss_dssp STTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSC
T ss_pred CccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhCC
Confidence 1 123567999999999999999999999864 332 2334455667899999999998877763 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|++ |++++
T Consensus 162 gGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 239 (263)
T 2olj_A 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIE 239 (263)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 57778999999997 68888
Q ss_pred ECCC
Q 047682 1061 VGPL 1064 (1425)
Q Consensus 1061 ~G~~ 1064 (1425)
.|+.
T Consensus 240 ~g~~ 243 (263)
T 2olj_A 240 EGKP 243 (263)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8875
No 20
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1.5e-39 Score=415.83 Aligned_cols=195 Identities=28% Similarity=0.357 Sum_probs=148.5
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhc-C----C-----CCCc---eEEE------EEEEcCccCCccc-----
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----R-----KTGG---YITG------NIKISGYPKKQET----- 909 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~-g----~-----~~~~---~~~G------~i~i~g~~~~~~~----- 909 (1425)
.|+|||++|++||++||+|+||||||||+++|. | . ...| .+.| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 589999999999999999999999999999964 1 0 1122 2344 5888887652110
Q ss_pred -----------------ccceEEEeecCCCCC------------------------------------------------
Q 047682 910 -----------------FARISGYCEQNDIHS------------------------------------------------ 924 (1425)
Q Consensus 910 -----------------~~~~~gyv~Q~~~~~------------------------------------------------ 924 (1425)
..+..||++|...+.
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 013347777643221
Q ss_pred ------CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCcCCHHHHHHHHHHHHHhhCC
Q 047682 925 ------PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 997 (1425)
Q Consensus 925 ------~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p 997 (1425)
..+||.|++.|... . .. ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 14688888876321 1 11 123568899999986 44544 4579999999999999999865
Q ss_pred ---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe-----CCcEEEEECCC
Q 047682 998 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGYEIYVGPL 1064 (1425)
Q Consensus 998 ---~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~-----~Gg~~~y~G~~ 1064 (1425)
+||+|||||+|||+.+...+++.|++++++|.|||+++|++. ..+.+|+|++|. ++|++++.|++
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999988999999999985 347899999994 46788998875
No 21
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-40 Score=374.54 Aligned_cols=213 Identities=22% Similarity=0.265 Sum_probs=183.8
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 7 l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 7 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcc
Confidence 78899988773 34699999999999999999999999999999999998653 4899999998764
Q ss_pred c----------------ccccceEEEeecCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCccc-cc
Q 047682 907 Q----------------ETFARISGYCEQNDIHSPNVTVYESLLYSA-WLRLPPDVDSETRRMFLEEIMELVELNPL-RQ 968 (1425)
Q Consensus 907 ~----------------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~ 968 (1425)
. ..+++.+||++|++.+++.+||+||+.++. ..+ ..+.++.++.++++++.++|.+. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 1 123567999999999999999999999864 322 23344556678999999999987 77
Q ss_pred cccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCE
Q 047682 969 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1048 (1425)
Q Consensus 969 ~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~ 1048 (1425)
.. +..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|+
T Consensus 149 ~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 222 (262)
T 1b0u_A 149 KY-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 222 (262)
T ss_dssp SC-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 66 3579999999999999999999999999999999999999999999999877999999999986 57778999
Q ss_pred EEEEeCCcEEEEECCC
Q 047682 1049 LFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1049 v~~l~~Gg~~~y~G~~ 1064 (1425)
+++|++ |+++..|+.
T Consensus 223 v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 223 VIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp EEEEET-TEEEEEECH
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999997 688888875
No 22
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.9e-40 Score=370.56 Aligned_cols=214 Identities=24% Similarity=0.328 Sum_probs=184.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 488999988773 35699999999999999999999999999999999997653 489999999876
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHH
Q 047682 906 KQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 906 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq 983 (1425)
.. ...++.+||++|++.+++.+||+||+.+....+ ....++.++.++++++.++|.+..+..+ ..|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 43 234567999999999999999999999876443 1233444567889999999998887764 5799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999986 46677999999997 68888887
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
.
T Consensus 230 ~ 230 (256)
T 1vpl_A 230 V 230 (256)
T ss_dssp H
T ss_pred H
Confidence 5
No 23
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=6.8e-40 Score=373.30 Aligned_cols=206 Identities=25% Similarity=0.344 Sum_probs=175.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC-----CccceEEEEccCC-CCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF-----VPQRTAAYISQHD-VHIG 208 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d-~~~~ 208 (1425)
.+|+|||++|++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++... ..++.+|||+|++ ..++
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 5999999999999999999999999999999999999998 99999999988421 1246799999985 3556
Q ss_pred CCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 047682 209 EMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDE 288 (1425)
Q Consensus 209 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 288 (1425)
.+||+||+.|+....+.. ..+...+++++++.+||++..+..++
T Consensus 99 ~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~~-- 142 (275)
T 3gfo_A 99 SASVYQDVSFGAVNMKLP----------------------------------EDEIRKRVDNALKRTGIEHLKDKPTH-- 142 (275)
T ss_dssp SSBHHHHHHHHHHTSCCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTSBGG--
T ss_pred cCcHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhcCCcc--
Confidence 899999999986543210 01123457789999999988776554
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+..+. +|+.++|+..++.++||+|++|+
T Consensus 143 ---~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~-tvi~vtHdl~~~~~~~drv~~l~ 218 (275)
T 3gfo_A 143 ---CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI-TIIIATHDIDIVPLYCDNVFVMK 218 (275)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCC-EEEEEESCCSSGGGGCSEEEEEE
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCC-EEEEEecCHHHHHHhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999998733444 45557889999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 047682 369 EGQIVFQGPREHVLE 383 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~~ 383 (1425)
+|+++++|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 219 EGRVILQGNPKEVFA 233 (275)
T ss_dssp TTEEEEEECHHHHTH
T ss_pred CCEEEEECCHHHHhc
Confidence 999999999998754
No 24
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=9.5e-40 Score=365.22 Aligned_cols=207 Identities=22% Similarity=0.273 Sum_probs=171.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCcc-------ceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQ-------RTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q~d~~ 206 (1425)
.++|+|||+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.....+ +.++||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 46999999999999999999999999999999999999998 99999999998765432 359999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccc-ccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVC-ADTMV 285 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~~t~v 285 (1425)
++.+||+||+.++......... . ..+...++.++++.+||.+. .+..+
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~-------~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAM-------S------------------------GEERRKRALECLKMAELEERFANHKP 143 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCC-------C------------------------HHHHHHHHHHHHHHTTCCGGGTTCCG
T ss_pred CCCCcHHHHHHHHHHhhhccCC-------C------------------------HHHHHHHHHHHHHHCCCChhhhhCCh
Confidence 9999999999997653211000 0 01123346678999999764 35444
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++..+.|+|+ ++|+.. ..++||+|+
T Consensus 144 -----~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~-vtHd~~-~~~~~d~i~ 216 (235)
T 3tif_A 144 -----NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVV-VTHDIN-VARFGERII 216 (235)
T ss_dssp -----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE-ECSCHH-HHTTSSEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE-EcCCHH-HHHhCCEEE
Confidence 4699999999999999999999999999999999999999999999997654555555 677776 568999999
Q ss_pred EEcCCeEEEecChhHH
Q 047682 366 LISEGQIVFQGPREHV 381 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~ 381 (1425)
+|++|+++..|+.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999987764
No 25
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-39 Score=382.75 Aligned_cols=207 Identities=27% Similarity=0.394 Sum_probs=180.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
+++|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999876543 4679999999999999999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.|+.+..+. .+ .+.+.+++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~----------~~------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 133 (359)
T 2yyz_A 93 FENIAFPLRARRI----------SK------------------------DEVEKRVVEIARKLLIDNLLDRKP-----TQ 133 (359)
T ss_dssp HHHHHGGGSSSCS----------HH------------------------HHTTHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred HHHHHHHHHhcCC----------CH------------------------HHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 9999998643221 00 112345778999999998877655 46
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+.|+ +.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv-i~vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITS-VYVTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE-EEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEE-EEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876555554 4578999999999999999999999
Q ss_pred EEecChhHHHH
Q 047682 373 VFQGPREHVLE 383 (1425)
Q Consensus 373 v~~G~~~~~~~ 383 (1425)
+..|+++++.+
T Consensus 213 ~~~g~~~~l~~ 223 (359)
T 2yyz_A 213 VQYGTPDEVYD 223 (359)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999998853
No 26
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.7e-39 Score=369.11 Aligned_cols=204 Identities=26% Similarity=0.355 Sum_probs=178.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 46999999999999999999999999999999999999998 9999999999876543 35699999998888899
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++...... .+...+++.+++.+||.+..+..++
T Consensus 101 tv~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 140 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLALAQRDYR---- 140 (266)
T ss_dssp BHHHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTTTTSBGG----
T ss_pred CHHHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhHhcCCcc----
Confidence 999999997542110 0112346778999999888776554
Q ss_pred ccCChhhhhhHHHHHHHhc------CCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 291 RGISGGQRKRVTTGEMLVG------PALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~------~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
.|||||||||+|||||+. +|++|||||||+|||+.++.++++.|+++++. ++++|+.++|+..++.++||+|
T Consensus 141 -~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~-~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 141 -VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ-EPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp -GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH-SSEEEEEECSCHHHHHHHCSEE
T ss_pred -cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc-CCCEEEEEEcCHHHHHHhCCEE
Confidence 599999999999999999 99999999999999999999999999998764 4556666899999999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 047682 365 ILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~ 382 (1425)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999998874
No 27
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=5.1e-40 Score=372.69 Aligned_cols=217 Identities=25% Similarity=0.288 Sum_probs=183.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++ ++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 378899988773 34699999999999999999999999999999999998663 489999999876
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHHhhc-cCCC---------CCCHHHHHHHHHHHHHHcCCcccccccc
Q 047682 906 KQE----TFARISGYCEQNDIHSPNVTVYESLLYSAWL-RLPP---------DVDSETRRMFLEEIMELVELNPLRQSLV 971 (1425)
Q Consensus 906 ~~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~l-r~~~---------~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 971 (1425)
... ..++.+||++|++.+++.+||+||+.+.... +... .....+.++.++++++.+||.+..+..+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 431 2345699999999999999999999886532 1110 0122344566889999999998887764
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEE
Q 047682 972 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1051 (1425)
Q Consensus 972 g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~ 1051 (1425)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 479999999999999999999999999999999999999999999999877999999999997 47788999999
Q ss_pred EeCCcEEEEECCC
Q 047682 1052 MKRGGYEIYVGPL 1064 (1425)
Q Consensus 1052 l~~Gg~~~y~G~~ 1064 (1425)
|++ |++++.|+.
T Consensus 226 l~~-G~i~~~g~~ 237 (257)
T 1g6h_A 226 MFN-GQIIAEGRG 237 (257)
T ss_dssp EET-TEEEEEEES
T ss_pred EEC-CEEEEEeCH
Confidence 997 688888876
No 28
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.6e-39 Score=366.50 Aligned_cols=206 Identities=20% Similarity=0.335 Sum_probs=174.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCC--CCC---ccceEEEEccCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD--EFV---PQRTAAYISQHDVHIG 208 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~---~~~~~~yv~Q~d~~~~ 208 (1425)
+++|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 35999999999999999999999999999999999999998 999999999874 111 1356999999998999
Q ss_pred CCCHHHHHHhhh-hhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 209 EMTVRETLAFSA-RCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 209 ~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
.+||+||+.|+. +..+.. + .+...+++.+++.+||++..+..++
T Consensus 114 ~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~~~~- 158 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWP----------R------------------------EKAEAKAMELLDKVGLKDKAHAYPD- 158 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCGG-
T ss_pred CCCHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCchHhcCChh-
Confidence 999999999864 222110 0 0112346778999999887776554
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
.|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++.+. + ++|+.++|+..++.++||+|++|
T Consensus 159 ----~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g-~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 159 ----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-G-MTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp ----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHCSEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-C-CEEEEEcCCHHHHHHhCCEEEEE
Confidence 59999999999999999999999999999999999999999999998654 4 45555789999999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 047682 368 SEGQIVFQGPREHVLE 383 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~~~ 383 (1425)
++|++++.|+++++.+
T Consensus 233 ~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 233 DGGYIIEEGKPEDLFD 248 (263)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999988753
No 29
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.8e-39 Score=360.57 Aligned_cols=200 Identities=26% Similarity=0.354 Sum_probs=169.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-------cceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-------QRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 206 (1425)
+++|+|+|+++++|++++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 45999999999999999999999999999999999999998 9999999998865432 1569999999989
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++.+||+||+.++....+.. + .+....++++++.+||++..+..++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKP----------K------------------------KEAKERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCTTCTTCCGG
T ss_pred CCCCCHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhCChh
Confidence 99999999999875432210 0 0112346778999999887776554
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. +.|+|+ ++|+..++ ++||+|++
T Consensus 140 -----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~-vtHd~~~~-~~~d~v~~ 211 (224)
T 2pcj_A 140 -----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVM-VTHERELA-ELTHRTLE 211 (224)
T ss_dssp -----GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEE-ECSCHHHH-TTSSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEE-EcCCHHHH-HhCCEEEE
Confidence 59999999999999999999999999999999999999999999998764 555544 67777666 89999999
Q ss_pred EcCCeEEEecCh
Q 047682 367 ISEGQIVFQGPR 378 (1425)
Q Consensus 367 L~~G~iv~~G~~ 378 (1425)
|++|+++++|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999864
No 30
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.1e-39 Score=382.34 Aligned_cols=216 Identities=24% Similarity=0.368 Sum_probs=188.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ +++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 588899987761 123589999999999999999999999999999999998763 489999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHH
Q 047682 906 KQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 906 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr 984 (1425)
.. ...++.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..+... ..||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHH
Confidence 43 234577999999999999999999999987654 2345566678999999999999888764 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
|||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 229 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999755 999999999986 67889999999997 68889888
Q ss_pred CC
Q 047682 1064 LG 1065 (1425)
Q Consensus 1064 ~~ 1065 (1425)
+.
T Consensus 230 ~~ 231 (355)
T 1z47_A 230 PE 231 (355)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 31
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.2e-39 Score=381.97 Aligned_cols=207 Identities=25% Similarity=0.399 Sum_probs=180.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
+++|+|+|++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 45899999999999999999999999999999999999998 9999999999876443 4679999999999999999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.|+.+..+.. + .+.+.+++++++.+||++..+..+ ..
T Consensus 105 ~eni~~~l~~~~~~----------~------------------------~~~~~~v~~~l~~~gL~~~~~r~~-----~~ 145 (355)
T 1z47_A 105 YDNVSFGLREKRVP----------K------------------------DEMDARVRELLRFMRLESYANRFP-----HE 145 (355)
T ss_dssp HHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred HHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhcCCc-----cc
Confidence 99999986543210 0 112345778999999998877655 46
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+ +.++|+..++..++|+|++|++|++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv-i~vTHd~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTS-VFVTHDQEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEE-EEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE-EEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876555554 5578999999999999999999999
Q ss_pred EEecChhHHHH
Q 047682 373 VFQGPREHVLE 383 (1425)
Q Consensus 373 v~~G~~~~~~~ 383 (1425)
+..|+++++.+
T Consensus 225 ~~~g~~~~l~~ 235 (355)
T 1z47_A 225 EQFGTPEEVYE 235 (355)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999998853
No 32
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.4e-39 Score=382.89 Aligned_cols=213 Identities=26% Similarity=0.385 Sum_probs=186.4
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|||+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 77888887762 34699999999999999999999999999999999998663 4899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 907 Q-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 907 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
. ...+|.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..+... ..|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 3 223567999999999999999999999986554 2345566678999999999998888764 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999999755 999999999986 67889999999997 688898986
No 33
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.4e-39 Score=382.87 Aligned_cols=207 Identities=29% Similarity=0.443 Sum_probs=180.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
+++|+|+|+++++|++++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999876544 4679999999999999999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.|+.+..+.. + .+...+++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 133 (362)
T 2it1_A 93 YKNIAFPLELRKAP----------R------------------------EEIDKKVREVAKMLHIDKLLNRYP-----WQ 133 (362)
T ss_dssp HHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred HHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhhCCh-----hh
Confidence 99999986543210 0 112345778999999998777655 46
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+.|+ +.++|+..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv-i~vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT-VYVTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEE-EEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEE-EEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876555554 4578999999999999999999999
Q ss_pred EEecChhHHHH
Q 047682 373 VFQGPREHVLE 383 (1425)
Q Consensus 373 v~~G~~~~~~~ 383 (1425)
+..|+++++.+
T Consensus 213 ~~~g~~~~~~~ 223 (362)
T 2it1_A 213 LQVGTPDEVYY 223 (362)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999998853
No 34
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-39 Score=383.02 Aligned_cols=214 Identities=25% Similarity=0.345 Sum_probs=185.4
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|||+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP--TSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC--CccEEEECCEECC
Confidence 67888887762 35699999999999999999999999999999999998663 4899999998864
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 907 Q-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 907 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
. ...+|.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..+... ..|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 223567999999999999999999999875433 2333444567899999999999888764 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 999999999986 67889999999997 688999986
Q ss_pred C
Q 047682 1065 G 1065 (1425)
Q Consensus 1065 ~ 1065 (1425)
.
T Consensus 219 ~ 219 (359)
T 2yyz_A 219 D 219 (359)
T ss_dssp H
T ss_pred H
Confidence 3
No 35
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.3e-39 Score=383.39 Aligned_cols=213 Identities=26% Similarity=0.348 Sum_probs=186.5
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC--CccEEEECCEECc
Confidence 77888888763 35699999999999999999999999999999999998663 4899999998753
Q ss_pred c-------ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcC
Q 047682 907 Q-------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGL 979 (1425)
Q Consensus 907 ~-------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 979 (1425)
. ...+|.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..+..+ ..|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----REL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCc-----ccC
Confidence 2 123567999999999999999999999987654 2345566678999999999999888764 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEE
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1058 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~ 1058 (1425)
||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i 218 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVL 218 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEE
Confidence 999999999999999999999999999999999999999999998755 999999999986 68889999999996 688
Q ss_pred EEECCC
Q 047682 1059 IYVGPL 1064 (1425)
Q Consensus 1059 ~y~G~~ 1064 (1425)
+..|++
T Consensus 219 ~~~g~~ 224 (372)
T 1g29_1 219 QQVGSP 224 (372)
T ss_dssp EEEECH
T ss_pred EEeCCH
Confidence 999986
No 36
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=5.6e-39 Score=411.96 Aligned_cols=195 Identities=27% Similarity=0.361 Sum_probs=144.3
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhh-hcCCC-------CC----------------ceEEE-------EEEEcC
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDV-LAGRK-------TG----------------GYITG-------NIKISG 902 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~-l~g~~-------~~----------------~~~~G-------~i~i~g 902 (1425)
.|+|||++|++||++||+|+||||||||++. |+|.. .+ ....| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 5899999999999999999999999999997 76421 11 12467 788998
Q ss_pred ccCCcccc----------------------cceEEEeec----------------------CCCCCC-------------
Q 047682 903 YPKKQETF----------------------ARISGYCEQ----------------------NDIHSP------------- 925 (1425)
Q Consensus 903 ~~~~~~~~----------------------~~~~gyv~Q----------------------~~~~~~------------- 925 (1425)
.+...... .|..||.++ +..+++
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 76532100 011122211 111111
Q ss_pred -------------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-cccccCCCCCCcCCHHHHH
Q 047682 926 -------------------NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-RQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 926 -------------------~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~lSgGqrq 985 (1425)
.+|+.|++.|.. .. ...+.+.++++.++|... .+.. +..|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~~---~~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFA------DE---SAIFRALDTLREVGLGYLRLGQP-----ATELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------TS---HHHHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhh------cc---hHHHHHHHHHHHcCCCcccccCC-----cccCCHHHHH
Confidence 245566554421 11 122357889999999863 3443 4579999999
Q ss_pred HHHHHHHHhhC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe-----CCcE
Q 047682 986 RLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGY 1057 (1425)
Q Consensus 986 Rl~ia~~L~~~---p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~-----~Gg~ 1057 (1425)
||.||++|+.+ |+||+|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|+|++|. ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCE
Confidence 99999999996 7999999999999999999999999999988999999999985 35 8899999994 4678
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
+++.|+.
T Consensus 816 Iv~~g~~ 822 (842)
T 2vf7_A 816 LVAQGTP 822 (842)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 8999875
No 37
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.6e-39 Score=381.92 Aligned_cols=207 Identities=26% Similarity=0.401 Sum_probs=173.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 212 (1425)
+++|+|+|++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 45999999999999999999999999999999999999998 9999999999876544 4679999999999999999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+.|+.+..+.. + .+...+++++++.+||++..+..++ .
T Consensus 101 ~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r~~~-----~ 141 (372)
T 1v43_A 101 YENIAFPLKIKKFP----------K------------------------DEIDKRVRWAAELLQIEELLNRYPA-----Q 141 (372)
T ss_dssp HHHHHTTCC--CCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCTT-----T
T ss_pred HHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhcCChh-----h
Confidence 99999975432210 0 1123457789999999988776554 5
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+.|+ +.++|+..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv-i~vTHd~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTHDQVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE-EEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEE-EEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876555555 4478999999999999999999999
Q ss_pred EEecChhHHHH
Q 047682 373 VFQGPREHVLE 383 (1425)
Q Consensus 373 v~~G~~~~~~~ 383 (1425)
+..|+++++.+
T Consensus 221 ~~~g~~~~l~~ 231 (372)
T 1v43_A 221 LQIGSPTEVYL 231 (372)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999998853
No 38
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.3e-39 Score=382.01 Aligned_cols=207 Identities=28% Similarity=0.404 Sum_probs=179.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCC------CCc-cceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE------FVP-QRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------~~~-~~~~~yv~Q~d~~ 206 (1425)
+++|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..+ ++.++||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 46999999999999999999999999999999999999998 9999999998754 332 4679999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++.+||+||+.|+.+..+.. ..+...+++++++.+||++..+..+
T Consensus 93 ~~~ltv~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~L~~~~~r~~- 137 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVP----------------------------------RQEIDQRVREVAELLGLTELLNRKP- 137 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------------------------------HHHHHHHHHHHHHHHTCGGGTTCCG-
T ss_pred CCCCCHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCchHhcCCc-
Confidence 99999999999986543210 0112345778999999998877655
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
..|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+.|+ +.++|+..++..++|+|++
T Consensus 138 ----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv-i~vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 138 ----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTT-IYVTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEE-EEEESCHHHHHHHCSEEEE
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEE-EEECCCHHHHHHhCCEEEE
Confidence 46999999999999999999999999999999999999999999999876555555 4478999999999999999
Q ss_pred EcCCeEEEecChhHHHH
Q 047682 367 ISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 367 L~~G~iv~~G~~~~~~~ 383 (1425)
|++|+++..|+++++.+
T Consensus 213 l~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EeCCEEEEeCCHHHHHh
Confidence 99999999999998853
No 39
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-39 Score=368.14 Aligned_cols=206 Identities=21% Similarity=0.295 Sum_probs=174.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCC----------CC------ccceE
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE----------FV------PQRTA 197 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----------~~------~~~~~ 197 (1425)
.++|+|||+++++|++++|+||||||||||||+|+|.++|+ +|+|.++|+++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 35999999999999999999999999999999999999998 9999999998751 11 13569
Q ss_pred EEEccCCCCCCCCCHHHHHHhhh-hhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhC
Q 047682 198 AYISQHDVHIGEMTVRETLAFSA-RCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLG 276 (1425)
Q Consensus 198 ~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 276 (1425)
+||+|++.+++.+||+||+.++. +..+.. + .+...+++++++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K------------------------HDARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------H------------------------HHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCC----------H------------------------HHHHHHHHHHHHHcC
Confidence 99999998999999999999864 221110 0 011234678899999
Q ss_pred Cccc-ccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChh
Q 047682 277 LDVC-ADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAP 355 (1425)
Q Consensus 277 L~~~-~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~ 355 (1425)
|++. .+..++ .|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. +. +|+.++|+..
T Consensus 142 L~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~-tvi~vtHd~~ 214 (262)
T 1b0u_A 142 IDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GK-TMVVVTHEMG 214 (262)
T ss_dssp CCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TC-CEEEECSCHH
T ss_pred CCchhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CC-EEEEEeCCHH
Confidence 9887 776554 59999999999999999999999999999999999999999999998653 44 4555789999
Q ss_pred hHHhhcCeEEEEcCCeEEEecChhHHHH
Q 047682 356 ETYDLFDDIILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 356 ~~~~~~D~vilL~~G~iv~~G~~~~~~~ 383 (1425)
++.++||+|++|++|++++.|+++++.+
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999988753
No 40
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=6.1e-40 Score=378.20 Aligned_cols=208 Identities=25% Similarity=0.387 Sum_probs=167.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
.++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++||+|++.++ ..
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF-ND 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCC-SE
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccC-cc
Confidence 35999999999999999999999999999999999999998 9999999999987653 46799999987766 56
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+|||.|+..... .+...+++...+ ....++ .++...+|.+|+.+
T Consensus 143 Tv~eNi~~~~~~~~-------------------------~~~~~~~~~~~~------l~~~i~--~lp~gl~t~~~~~g- 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG-------------------------NDEVEAAAQAAG------IHDAIM--AFPEGYRTQVGERG- 188 (306)
T ss_dssp EHHHHHHTTSTTCC-------------------------HHHHHHHHHHHT------CHHHHH--HSTTGGGCEESTTS-
T ss_pred cHHHHHHhhcccCC-------------------------HHHHHHHHHHhC------cHHHHH--hccchhhhHhcCCc-
Confidence 99999998742110 011111111000 011111 24556788888654
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
..|||||||||+|||||+.+|+||||||||+|||+.++..|.+.|+++.+ ++|+|+ ++|....+.. ||+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~-itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIV-VAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEE-ECCSHHHHHT-CSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEE-EEcChHHHHc-CCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998853 455555 7788777765 9999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+|++.|+++++++
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
No 41
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-39 Score=364.77 Aligned_cols=213 Identities=23% Similarity=0.331 Sum_probs=180.3
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++ ++.+|+|||++|++||++||+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 378899988773 25699999999999999999999999999999999997653 489999999876
Q ss_pred Ccc---c-ccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CccccccccCCCCCCcCC
Q 047682 906 KQE---T-FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVE-LNPLRQSLVGLPGVSGLS 980 (1425)
Q Consensus 906 ~~~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~g~~~~~~lS 980 (1425)
... . .++.+||++|++.+++.+||+||+.+..... ...++.++.++++++.++ |.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCC
Confidence 431 1 2345999999999999999999998864211 122334456788999995 88777665 45799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1060 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y 1060 (1425)
||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|++ |++++
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 57789999999997 68888
Q ss_pred ECCC
Q 047682 1061 VGPL 1064 (1425)
Q Consensus 1061 ~G~~ 1064 (1425)
.|+.
T Consensus 220 ~g~~ 223 (240)
T 1ji0_A 220 EGKA 223 (240)
T ss_dssp EEEH
T ss_pred EcCH
Confidence 8875
No 42
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.3e-39 Score=370.12 Aligned_cols=213 Identities=25% Similarity=0.326 Sum_probs=183.4
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++ ++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 488899998773 35799999999999999999999999999999999997653 479999999886
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE 982 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG 982 (1425)
.. ...++.+||++|++.+++.+||+||+.++.... ...+.++.++++++.++|.+..+..+ ..||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 43 234567899999999888999999999875432 11233456889999999998887764 479999
Q ss_pred HHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 983 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 983 qrqRl~ia~~L~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
|||||+|||||+. +|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999986 57789999999996
Q ss_pred cEEEEECCCC
Q 047682 1056 GYEIYVGPLG 1065 (1425)
Q Consensus 1056 g~~~y~G~~~ 1065 (1425)
|++++.|+..
T Consensus 224 G~i~~~g~~~ 233 (266)
T 4g1u_C 224 GKLVACGTPE 233 (266)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEEcCHH
Confidence 6889999874
No 43
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.9e-39 Score=380.31 Aligned_cols=205 Identities=22% Similarity=0.316 Sum_probs=177.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCC-----CC-ccceEEEEccCCCCCCC
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE-----FV-PQRTAAYISQHDVHIGE 209 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~-----~~-~~~~~~yv~Q~d~~~~~ 209 (1425)
+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. .. .++.++||+|+..+++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999998 9999999998754 22 24679999999999999
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+||+||+.|+.+..+.. + .+...+++++++.+||++..+..+
T Consensus 97 ltv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~~~~---- 138 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMS----------K------------------------EEIRKRVEEVAKILDIHHVLNHFP---- 138 (353)
T ss_dssp SCHHHHHHGGGTTSSCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCG----
T ss_pred CCHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhcCCh----
Confidence 99999999986543210 0 112345778999999998877655
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+ +.++|+..++..++|+|++|++
T Consensus 139 -~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv-i~vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 139 -RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTL-LVVSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp -GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEE-EEEESCHHHHHHHCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEE-EEEeCCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999876555554 4478999999999999999999
Q ss_pred CeEEEecChhHHHH
Q 047682 370 GQIVFQGPREHVLE 383 (1425)
Q Consensus 370 G~iv~~G~~~~~~~ 383 (1425)
|+++..|+++++.+
T Consensus 217 G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 217 GKLVQVGKPEDLYD 230 (353)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999998853
No 44
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5e-39 Score=362.97 Aligned_cols=206 Identities=25% Similarity=0.281 Sum_probs=175.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC--ccceEEEEccCCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 211 (1425)
+++|+|||+++++|++++|+||||||||||||+|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 35999999999999999999999999999999999999998 999999999876421 2357999999998999999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+||+.++....+.. . .+....++++++.+||++..++.++
T Consensus 105 v~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~~----- 145 (256)
T 1vpl_A 105 GIEYLRFVAGFYASS----------S------------------------SEIEEMVERATEIAGLGEKIKDRVS----- 145 (256)
T ss_dssp HHHHHHHHHHHHCCC----------H------------------------HHHHHHHHHHHHHHCCGGGGGSBGG-----
T ss_pred HHHHHHHHHHHcCCC----------h------------------------HHHHHHHHHHHHHCCCchHhcCChh-----
Confidence 999999865432110 0 0112346778999999987776654
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCe
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQ 371 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 371 (1425)
.|||||||||+||+||+.+|++++|||||+|||+.++..+++.|+++.+ .+ ++|+.++|+..++..+||++++|++|+
T Consensus 146 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g-~tiiivtHd~~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EG-LTILVSSHNMLEVEFLCDRIALIHNGT 223 (256)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT-CEEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CC-CEEEEEcCCHHHHHHHCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999864 34 455557888889999999999999999
Q ss_pred EEEecChhHHHH
Q 047682 372 IVFQGPREHVLE 383 (1425)
Q Consensus 372 iv~~G~~~~~~~ 383 (1425)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999988854
No 45
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.4e-39 Score=382.92 Aligned_cols=214 Identities=27% Similarity=0.381 Sum_probs=186.2
Q ss_pred EEEecceeeeecchhhhhccccCCcee--eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLV--LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
++++|+++.++ ++. +|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 67888888773 234 99999999999999999999999999999999998663 48999999987
Q ss_pred CCc------ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCc
Q 047682 905 KKQ------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSG 978 (1425)
Q Consensus 905 ~~~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 978 (1425)
... ...++.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..+..+ ..
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 532 234677999999999999999999999876443 3345566678999999999999888764 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
|||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 999999999986 68889999999997 68
Q ss_pred EEEECCCC
Q 047682 1058 EIYVGPLG 1065 (1425)
Q Consensus 1058 ~~y~G~~~ 1065 (1425)
++..|++.
T Consensus 219 i~~~g~~~ 226 (353)
T 1oxx_K 219 LVQVGKPE 226 (353)
T ss_dssp EEEEECHH
T ss_pred EEEEcCHH
Confidence 88988863
No 46
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.2e-39 Score=382.61 Aligned_cols=214 Identities=22% Similarity=0.344 Sum_probs=180.4
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECC
Confidence 78899988773 35699999999999999999999999999999999998663 4899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 907 Q-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 907 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
. ...+|.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..+... ..|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 223567999999999999999999999875332 2345566678999999999999888764 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|++
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999765 999999999986 67889999999997 688898886
Q ss_pred C
Q 047682 1065 G 1065 (1425)
Q Consensus 1065 ~ 1065 (1425)
.
T Consensus 227 ~ 227 (372)
T 1v43_A 227 T 227 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 47
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.6e-39 Score=379.15 Aligned_cols=201 Identities=24% Similarity=0.358 Sum_probs=176.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc-cceEEEEccCCCCCCCCCHHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999998 9999999999876433 467999999999999999999
Q ss_pred HHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 047682 215 TLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294 (1425)
Q Consensus 215 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LS 294 (1425)
|+.|+.+..+... . .+++++++.+||++..|..+ ..||
T Consensus 92 nl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~~~-----~~LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDRNP-----LTLS 129 (348)
T ss_dssp HHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTSCG-----GGSC
T ss_pred HHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 9999765322100 0 24677899999998877655 4699
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVF 374 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~ 374 (1425)
|||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.| ++.++|+..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~t-ii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT-VLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999987655555 5557899999999999999999999999
Q ss_pred ecChhHHH
Q 047682 375 QGPREHVL 382 (1425)
Q Consensus 375 ~G~~~~~~ 382 (1425)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99999884
No 48
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.8e-39 Score=365.53 Aligned_cols=216 Identities=25% Similarity=0.342 Sum_probs=173.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 209 (1425)
+++|+|||+++++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 35999999999999999999999999999999999999998 9999999998865432 3569999999888999
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+||+||+.++......+ .+.... + .. ... ...+....++++++.+||++..++.++
T Consensus 97 ~tv~enl~~~~~~~~~~-~~~~~~---~----~~-~~~------------~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 152 (257)
T 1g6h_A 97 MTVLENLLIGEICPGES-PLNSLF---Y----KK-WIP------------KEEEMVEKAFKILEFLKLSHLYDRKAG--- 152 (257)
T ss_dssp SBHHHHHHGGGTSTTSC-HHHHHH---H----CS-SCC------------CCHHHHHHHHHHHHHTTCGGGTTSBGG---
T ss_pred CcHHHHHHHHHhhhccC-cccccc---c----cc-ccC------------CHHHHHHHHHHHHHHcCCchhhCCCch---
Confidence 99999999864320000 000000 0 00 000 000112346788999999887776654
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++. +. +|+.++|+..++.++||+|++|++
T Consensus 153 --~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~-tvi~vtHd~~~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 153 --ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GI-TFLIIEHRLDIVLNYIDHLYVMFN 228 (257)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC-EEEEECSCCSTTGGGCSEEEEEET
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CC-EEEEEecCHHHHHHhCCEEEEEEC
Confidence 59999999999999999999999999999999999999999999998653 44 455578888899999999999999
Q ss_pred CeEEEecChhH
Q 047682 370 GQIVFQGPREH 380 (1425)
Q Consensus 370 G~iv~~G~~~~ 380 (1425)
|++++.|++++
T Consensus 229 G~i~~~g~~~~ 239 (257)
T 1g6h_A 229 GQIIAEGRGEE 239 (257)
T ss_dssp TEEEEEEESHH
T ss_pred CEEEEEeCHHH
Confidence 99999999888
No 49
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.9e-39 Score=359.68 Aligned_cols=204 Identities=22% Similarity=0.333 Sum_probs=171.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 209 (1425)
+++|+|+|+++++|++++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 45999999999999999999999999999999999999998 9999999999865432 2459999999989999
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhC-CcccccccccCc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLG-LDVCADTMVGDE 288 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~~t~vg~~ 288 (1425)
+||+||+.++.... ... .+....++.+++.++ |++..++.+
T Consensus 96 ltv~enl~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~~~l~~~~~~~~--- 137 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KDK----------------------------------EGIKRDLEWIFSLFPRLKERLKQLG--- 137 (240)
T ss_dssp SBHHHHHHGGGTTC-CCS----------------------------------SHHHHHHHHHHHHCHHHHTTTTSBS---
T ss_pred CcHHHHHHHhhhcC-CCH----------------------------------HHHHHHHHHHHHHcccHhhHhcCCh---
Confidence 99999999863110 000 011223566788884 877666554
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ .+.| |+.++|+..++.++||+|++|+
T Consensus 138 --~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t-vi~vtHd~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 138 --GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTT-ILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp --SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCC-EEEEESCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCE-EEEEecCHHHHHHhCCEEEEEE
Confidence 45999999999999999999999999999999999999999999999865 3444 5557888889999999999999
Q ss_pred CCeEEEecChhHHH
Q 047682 369 EGQIVFQGPREHVL 382 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~ 382 (1425)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999988774
No 50
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=3.3e-38 Score=404.99 Aligned_cols=195 Identities=26% Similarity=0.374 Sum_probs=145.7
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhc-C----C-----CCCc---eEEE------EEEEcCccCCccc-----
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----R-----KTGG---YITG------NIKISGYPKKQET----- 909 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~-g----~-----~~~~---~~~G------~i~i~g~~~~~~~----- 909 (1425)
.|+|||++|++|+++||+|+||||||||+++|. | . ...| .+.| .|.+++.++....
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 589999999999999999999999999999963 2 1 1122 1223 3566665542100
Q ss_pred -----------------ccceEEEeecCCCCC----------------------C-------------------------
Q 047682 910 -----------------FARISGYCEQNDIHS----------------------P------------------------- 925 (1425)
Q Consensus 910 -----------------~~~~~gyv~Q~~~~~----------------------~------------------------- 925 (1425)
..+..||++|...+. +
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 012346666643211 1
Q ss_pred -------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCcCCHHHHHHHHHHHHHhhCC
Q 047682 926 -------NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 997 (1425)
Q Consensus 926 -------~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p 997 (1425)
.+||.|++.|... . .. ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP------I-AG--VHRYLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT------C-HH--HHHHHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhc------c-hH--HHHHHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCC
Confidence 3678888776331 1 11 123468899999976 34443 4579999999999999999865
Q ss_pred ---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe-----CCcEEEEECCC
Q 047682 998 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGYEIYVGPL 1064 (1425)
Q Consensus 998 ---~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~-----~Gg~~~y~G~~ 1064 (1425)
+||+|||||+|||+.+...+++.|+++++.|.|||+++|++. ..+.+|+|++|. ++|++++.|++
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gg~~~G~Iv~~G~~ 955 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD--VIKTSDWIIDLGPEGGAGGGTVVAQGTP 955 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSTTSCSEEEEEECH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCcCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999985 347899999995 46899999986
No 51
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.6e-39 Score=376.28 Aligned_cols=210 Identities=21% Similarity=0.279 Sum_probs=181.1
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++ +|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCEECC
Confidence 56778877662 34 99999999999999999999999999999999998663 4899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 907 Q-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 907 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
. ...+|.+|||+|+..++|.+||+||+.|+...+.. ... ++++++++.++|.+..+... ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 22356799999999999999999999998654321 111 56889999999999888764 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.+ .|.|||++||+++ ++..++|++++|++ |+++..|++
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999975 4999999999986 68889999999986 678888876
Q ss_pred C
Q 047682 1065 G 1065 (1425)
Q Consensus 1065 ~ 1065 (1425)
.
T Consensus 213 ~ 213 (348)
T 3d31_A 213 E 213 (348)
T ss_dssp H
T ss_pred H
Confidence 3
No 52
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=9.5e-39 Score=363.90 Aligned_cols=217 Identities=22% Similarity=0.322 Sum_probs=179.3
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++... ...+.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEECc
Confidence 67888888773100 0015799999999999999999999999999999999998653 4899999998764
Q ss_pred cccccceEEEeecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc--cccccccCCCCCCcCCHHH
Q 047682 907 QETFARISGYCEQND-IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN--PLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 907 ~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~~g~~~~~~lSgGq 983 (1425)
...+++.+||++|++ ..++.+||+||+.+..... ...++.++.++++++.+||. +..+..+ ..|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHH
Confidence 334456799999995 5667899999999864322 11112234578999999998 8777663 5799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ .+...+|++++|++ |++++.|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 221 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999777999999999997 46678999999997 67888887
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
.
T Consensus 222 ~ 222 (266)
T 2yz2_A 222 R 222 (266)
T ss_dssp H
T ss_pred H
Confidence 5
No 53
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.2e-38 Score=359.91 Aligned_cols=218 Identities=25% Similarity=0.272 Sum_probs=174.2
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ++.+|+|||++|++||++||+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 78889988773 25699999999999999999999999999999999997211256899999998764
Q ss_pred cc---cc-cceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-ccccccccCCCCCCc-CC
Q 047682 907 QE---TF-ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVEL-NPLRQSLVGLPGVSG-LS 980 (1425)
Q Consensus 907 ~~---~~-~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l-~~~~~~~~g~~~~~~-lS 980 (1425)
.. .. ++.++|++|++.+++.+||+|++.+.............+.++.++++++.++| .+..+..+ .. ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCC
Confidence 31 11 33589999999999999999999886532111112233445668899999999 57777664 35 99
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-cCEEEEEeCCcEEE
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGYEI 1059 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-fD~v~~l~~Gg~~~ 1059 (1425)
||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ .+... +|++++|++ |+++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~ 223 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVV 223 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999767999999999986 35556 599999997 6888
Q ss_pred EECCC
Q 047682 1060 YVGPL 1064 (1425)
Q Consensus 1060 y~G~~ 1064 (1425)
+.|+.
T Consensus 224 ~~g~~ 228 (250)
T 2d2e_A 224 ATGGP 228 (250)
T ss_dssp EEESH
T ss_pred EEeCH
Confidence 88875
No 54
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-38 Score=356.88 Aligned_cols=208 Identities=21% Similarity=0.311 Sum_probs=176.9
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ + +|+|||+++++ |++||+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 46778887662 1 49999999999 99999999999999999999998653 4899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 907 Q-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 907 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
. ...++.+||++|++.+++.+||+||+.|....+ . ....++.++++++.++|.+..+..+ ..|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 3 234567899999999999999999998864321 1 1222566889999999988877764 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999999754 999999999986 57788999999997 688888875
No 55
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.9e-39 Score=365.95 Aligned_cols=218 Identities=22% Similarity=0.358 Sum_probs=178.9
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++ ++.+|+|||++|++||++||+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 21 ~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 85 (279)
T 2ihy_A 21 LIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTBCC
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 589999998773 24699999999999999999999999999999999998663 489999999876
Q ss_pred C--c---ccccceEEEeecCCCCC--CCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 047682 906 K--Q---ETFARISGYCEQNDIHS--PNVTVYESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVS 977 (1425)
Q Consensus 906 ~--~---~~~~~~~gyv~Q~~~~~--~~lTv~E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 977 (1425)
. . ..+++.+||++|++.+. +.+||+||+.++...... .....++.++.++++++.++|.+..+..+ .
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 160 (279)
T 2ihy_A 86 GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-----G 160 (279)
T ss_dssp C---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred ccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 4 2 23456799999987543 457999999875321100 01112333566889999999998877764 4
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCccHHHHHhcCEEEEEeCC
Q 047682 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 978 ~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tv--i~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|| |++||+++ ++.+.+|++++|++
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~- 238 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD- 238 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEET-
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 799999999999999999999999999999999999999999999997669999 99999986 46678999999996
Q ss_pred cEEEEECCCC
Q 047682 1056 GYEIYVGPLG 1065 (1425)
Q Consensus 1056 g~~~y~G~~~ 1065 (1425)
|++++.|+..
T Consensus 239 G~i~~~g~~~ 248 (279)
T 2ihy_A 239 GQSIQQGAVE 248 (279)
T ss_dssp TEEEEEEEHH
T ss_pred CEEEEECCHH
Confidence 6888888753
No 56
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-38 Score=354.64 Aligned_cols=202 Identities=23% Similarity=0.332 Sum_probs=173.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-ccceEEEEccCCCCCCCCCHHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-PQRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
+|+|+|+++++ ++++|+||||||||||||+|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999998 999999999876432 2467999999998999999999
Q ss_pred HHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 047682 215 TLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294 (1425)
Q Consensus 215 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LS 294 (1425)
|+.|+.+..+. . ....+++++++.+||++..+..++ .||
T Consensus 90 nl~~~~~~~~~----------~--------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------V--------------------------ERDRRVREMAEKLGIAHLLDRKPA-----RLS 128 (240)
T ss_dssp HHHTTCTTSCH----------H--------------------------HHHHHHHHHHHTTTCTTTTTCCGG-----GSC
T ss_pred HHHHHHHHcCC----------c--------------------------hHHHHHHHHHHHcCCHHHhcCChh-----hCC
Confidence 99986432110 0 002346778999999887776554 599
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVF 374 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~ 374 (1425)
|||||||+|||||+.+|++++|||||+|||+.++..+++.|+++++..+.|+|+ ++|+..++.++||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~-vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH-VTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE-EESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999987644555544 6888889999999999999999999
Q ss_pred ecChhHHHH
Q 047682 375 QGPREHVLE 383 (1425)
Q Consensus 375 ~G~~~~~~~ 383 (1425)
.|+++++.+
T Consensus 208 ~g~~~~~~~ 216 (240)
T 2onk_A 208 KGKLKELFS 216 (240)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999988753
No 57
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=7.8e-38 Score=356.29 Aligned_cols=221 Identities=25% Similarity=0.291 Sum_probs=180.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ ++.+|+|||++|++||+++|+|||||||||||++|+|.....+.+|+|.++|.+.
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 489999998772 3569999999999999999999999999999999999732225689999999875
Q ss_pred Ccc---cc-cceEEEeecCCCCCCCCCHHHHHHHHhh-cc---CCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCC
Q 047682 906 KQE---TF-ARISGYCEQNDIHSPNVTVYESLLYSAW-LR---LPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGV 976 (1425)
Q Consensus 906 ~~~---~~-~~~~gyv~Q~~~~~~~lTv~E~l~~~~~-lr---~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 976 (1425)
... .. ++.+||++|++.+++.+||.|++.+... .+ .....+.++.++.++++++.++|. +..+..++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 421 11 2348999999999999999999987541 11 111233444456788999999996 46665532
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-cCEEEEEeCC
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1055 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-fD~v~~l~~G 1055 (1425)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+... +|++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-
Confidence 249999999999999999999999999999999999999999999998767999999999986 34454 899999997
Q ss_pred cEEEEECCCC
Q 047682 1056 GYEIYVGPLG 1065 (1425)
Q Consensus 1056 g~~~y~G~~~ 1065 (1425)
|++++.|+..
T Consensus 241 G~i~~~g~~~ 250 (267)
T 2zu0_C 241 GRIVKSGDFT 250 (267)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEEcCHH
Confidence 6888999863
No 58
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=8e-38 Score=356.25 Aligned_cols=205 Identities=24% Similarity=0.380 Sum_probs=173.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCC-CCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHD-VHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 212 (1425)
+++|+|+|++|++|++++|+||||||||||||+|+|.++|+ +|+|.++|+++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999998 999999998875432346799999984 56778999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc--ccccccccCccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD--VCADTMVGDEML 290 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~t~vg~~~~ 290 (1425)
+||+.|+.... ... .+...+++.+++.+||+ +..++.+
T Consensus 97 ~enl~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~----- 136 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPD----------------------------------RDPVPLVKKAMEFVGLDFDSFKDRVP----- 136 (266)
T ss_dssp HHHHHHTTTTT-CTT----------------------------------SCSHHHHHHHHHHTTCCHHHHTTCCG-----
T ss_pred HHHHHHHHHhc-CCH----------------------------------HHHHHHHHHHHHHcCcCCcccccCCh-----
Confidence 99999864321 000 01123467789999998 7776655
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. +. +|+.++|+..++..+||++++|++|
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~-tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GK-TVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC-EEEEECSCCTTTGGGCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CC-EEEEEeCCHHHHHHhCCEEEEEECC
Confidence 459999999999999999999999999999999999999999999998654 44 4555788888888999999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
++++.|+++++.+
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988764
No 59
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.5e-37 Score=350.93 Aligned_cols=207 Identities=23% Similarity=0.344 Sum_probs=173.8
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ +++.+|+|+|++|++||+++|+|||||||||||++|+|..++ .+|+|.+
T Consensus 5 l~i~~l~~~y~------------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~------ 64 (253)
T 2nq2_C 5 LSVENLGFYYQ------------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIEV------ 64 (253)
T ss_dssp EEEEEEEEEET------------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC--SEEEEEE------
T ss_pred EEEeeEEEEeC------------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEE------
Confidence 78889988762 124699999999999999999999999999999999997653 4799872
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 907 ~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
++.+||++|++.+++.+||+||+.+....... ........++.++++++.++|.+..+.. +..|||||||
T Consensus 65 ----~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~q 135 (253)
T 2nq2_C 65 ----YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE-----FTSLSGGQRQ 135 (253)
T ss_dssp ----CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHH
T ss_pred ----eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC-----hhhCCHHHHH
Confidence 35689999999999999999999986432111 0011233346688999999999887776 3579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+ ++.|+.
T Consensus 136 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~ 212 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGET 212 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCH
Confidence 999999999999999999999999999999999999999876 999999999986 46788999999997 56 888875
Q ss_pred C
Q 047682 1065 G 1065 (1425)
Q Consensus 1065 ~ 1065 (1425)
.
T Consensus 213 ~ 213 (253)
T 2nq2_C 213 R 213 (253)
T ss_dssp H
T ss_pred H
Confidence 3
No 60
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=9.3e-38 Score=357.10 Aligned_cols=210 Identities=25% Similarity=0.314 Sum_probs=170.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCC--CCC---ccceEEEEccCCCCC-
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD--EFV---PQRTAAYISQHDVHI- 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~---~~~~~~yv~Q~d~~~- 207 (1425)
+++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++. ... .++.++||+|++...
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 35999999999999999999999999999999999999998 999999999875 332 236799999986533
Q ss_pred -CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 208 -GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 208 -~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
+.+||+||+.++..... ..+. .. ..+...+++++++.+||++..+..++
T Consensus 111 ~~~ltv~enl~~~~~~~~--~~~~----------------~~------------~~~~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSI--GVYQ----------------DI------------DDEIRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp CTTSBHHHHHHTTC---------------------------C------------CHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCCCHHHHHHhhhhhcc--cccc----------------CC------------cHHHHHHHHHHHHHcCChhHhcCChh
Confidence 35699999998632100 0000 00 00112346778999999887776654
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEE-EEEecChhhHHhhcCeEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAV-ISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~i-i~~~q~~~~~~~~~D~vi 365 (1425)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+. +.|+. +.++|+..++.++||+|+
T Consensus 161 -----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~ 234 (279)
T 2ihy_A 161 -----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKIL 234 (279)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEE
T ss_pred -----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEE
Confidence 59999999999999999999999999999999999999999999998765 55651 457888888899999999
Q ss_pred EEcCCeEEEecChhHHH
Q 047682 366 LISEGQIVFQGPREHVL 382 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~~ 382 (1425)
+|++|++++.|+++++.
T Consensus 235 ~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 235 LLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp EEETTEEEEEEEHHHHC
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999988763
No 61
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.3e-38 Score=362.81 Aligned_cols=211 Identities=26% Similarity=0.338 Sum_probs=174.5
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
..++++|+++.++ +.+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 52 ~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~G~~ 117 (306)
T 3nh6_A 52 GRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQD 117 (306)
T ss_dssp CCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCcEEEECCEE
Confidence 4699999999874 234699999999999999999999999999999999997663 48999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 047682 905 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR-------QSLVGLP 974 (1425)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~ 974 (1425)
+.. ..+++.+|||+|++.+++ .||+||+.|+.. .... +.++++++.+++.+.. ++.+|..
T Consensus 118 i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~-----~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 187 (306)
T 3nh6_A 118 ISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRV-----TAGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGER 187 (306)
T ss_dssp TTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTST-----TCCH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTT
T ss_pred cccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcc-----cCCH----HHHHHHHHHhCcHHHHHhccchhhhHhcCC
Confidence 654 245678999999998885 599999987532 1222 2356667777765533 3444433
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
..+||||||||++|||||+.+|+||+|||||||||+.++..|++.|+++.+ ++|||+++|+++. + ..+|+|++|++
T Consensus 188 -g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~aD~i~vl~~ 263 (306)
T 3nh6_A 188 -GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-V-VNADQILVIKD 263 (306)
T ss_dssp -SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-H-HTCSEEEEEET
T ss_pred -cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-H-HcCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999864 7999999999863 4 45999999996
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 264 -G~iv~~G~~ 272 (306)
T 3nh6_A 264 -GCIVERGRH 272 (306)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 689999986
No 62
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=9.7e-38 Score=351.00 Aligned_cols=193 Identities=22% Similarity=0.343 Sum_probs=168.2
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHH
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ---ETFARISGYCEQNDIHSPNVTVY 930 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~ 930 (1425)
+|+|+|+++++||+++|+|||||||||||++|+|..+ +. |+|.++|.+... ..+++.+||++|++.+++.+||+
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 7999999999999999999999999999999999876 35 999999987532 23456799999999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCc-------EEEEe
Q 047682 931 ESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS-------IIFMD 1003 (1425)
Q Consensus 931 E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~-------illLD 1003 (1425)
||+.+... + ... ++.++++++.++|.+..+.. +..||||||||++|||+|+.+|+ +|+||
T Consensus 92 e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 92 HYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp HHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 99987521 1 111 34578999999999887765 35799999999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1004 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1004 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|||+|||+.++..+++.|+++.++|+|||+++|+++ .+.+.+|++++|++ |++++.|+.
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 217 (249)
T 2qi9_C 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 217 (249)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999877999999999986 46688999999996 678888875
No 63
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.1e-37 Score=348.61 Aligned_cols=200 Identities=26% Similarity=0.407 Sum_probs=161.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999998 9999999999876432 357999999887775 6
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccc-------ccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVC-------ADT 283 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-------~~t 283 (1425)
||+||+.++... . + ...++.+++.+|+.+. .++
T Consensus 98 tv~enl~~~~~~----~---------------------~---------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANPG----M---------------------S---------------VEKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCTT----C---------------------C---------------HHHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCCC----C---------------------C---------------HHHHHHHHHHhChHHHHHhCcchhhh
Confidence 999999885210 0 0 0012233444444432 234
Q ss_pred cccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 284 MVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 284 ~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
.++. ....|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+++. .+.|+|+ ++|+...+ +.||+
T Consensus 138 ~~~~-~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tvii-vtH~~~~~-~~~d~ 212 (247)
T 2ff7_A 138 IVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVII-IAHRLSTV-KNADR 212 (247)
T ss_dssp BCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEE-ECSSGGGG-TTSSE
T ss_pred hhhC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEE-EeCCHHHH-HhCCE
Confidence 4443 356799999999999999999999999999999999999999999999983 3555555 67776666 45999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 047682 364 IILISEGQIVFQGPREHVL 382 (1425)
Q Consensus 364 vilL~~G~iv~~G~~~~~~ 382 (1425)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
No 64
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.6e-37 Score=349.69 Aligned_cols=211 Identities=26% Similarity=0.417 Sum_probs=173.8
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++ .+++.+|+|||++|++||++||+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 7 ~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~i~g~~~ 73 (247)
T 2ff7_A 7 DITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDL 73 (247)
T ss_dssp EEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred ceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEh
Confidence 588999998772 1134699999999999999999999999999999999998653 489999999886
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccc-------cCCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSL-------VGLPG 975 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~-------~g~~~ 975 (1425)
.. ..+++.+||++|++.+++ .||+||+.+.. + ..+ ++.++++++.+++.+..+.. ++. .
T Consensus 74 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~ 142 (247)
T 2ff7_A 74 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN----P-GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE-Q 142 (247)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC----T-TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-T
T ss_pred hhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC----C-CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-C
Confidence 43 234567999999998876 59999998742 1 122 23367788888887665543 222 2
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++. + +.+|++++|++
T Consensus 143 ~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~- 218 (247)
T 2ff7_A 143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK- 218 (247)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-
Confidence 46899999999999999999999999999999999999999999999995 59999999999863 4 56999999997
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|++++.|+.
T Consensus 219 G~i~~~g~~ 227 (247)
T 2ff7_A 219 GKIVEQGKH 227 (247)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 688888875
No 65
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=7.6e-38 Score=356.92 Aligned_cols=214 Identities=22% Similarity=0.292 Sum_probs=172.0
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++.. +.+.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEc
Confidence 48899999877310 124699999999999999999999999999999999998653 489999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHH-----HHHHHHHHHHHc--CCccccccccCCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSET-----RRMFLEEIMELV--ELNPLRQSLVGLPG 975 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~-----~~~~v~~~l~~l--~l~~~~~~~~g~~~ 975 (1425)
.. ..+++.+|||+|++.+++ .||+||+.+.... ....+. .+..++++++.+ |+.+..+..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~----- 153 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTR----TPTMEEITAVAMESGAHDFISGFPQGYDTEVGET----- 153 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSS----CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhccc----CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----
Confidence 43 234567999999998887 5999999875321 111011 122345667777 676665554
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ .|+|||++||+++ ..+.+|++++|++
T Consensus 154 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~ 231 (271)
T 2ixe_A 154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE 231 (271)
T ss_dssp GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999864 4899999999985 3356999999997
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 232 -G~i~~~g~~ 240 (271)
T 2ixe_A 232 -GSVCEQGTH 240 (271)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 688888875
No 66
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.5e-37 Score=349.10 Aligned_cols=206 Identities=23% Similarity=0.305 Sum_probs=163.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGK--LDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~--~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 207 (1425)
+++|+|||+++++|++++|+||||||||||+|+|+|. ++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 4599999999999999999999999999999999998 6777 9999999998865432 23489999999999
Q ss_pred CCCCHHHHHHhhhhh-cCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCC-cccccccc
Q 047682 208 GEMTVRETLAFSARC-QGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGL-DVCADTMV 285 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~~t~v 285 (1425)
+.+||+||+.++... .+.. . . ..+....++.+++.+|| ++..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~-------------------~--~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGRE-------------------V--G-----------VAEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSC-------------------C--C-----------HHHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhcccc-------------------C--C-----------HHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999986421 1100 0 0 00112346778999999 46666555
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh-cCeE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL-FDDI 364 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~-~D~v 364 (1425)
++ +|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++..+ +|+|
T Consensus 141 ~~----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~~d~v 214 (250)
T 2d2e_A 141 NE----GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-P-NFGALVITHYQRILNYIQPDKV 214 (250)
T ss_dssp TC----C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-T-TCEEEEECSSSGGGGTSCCSEE
T ss_pred cc----CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCCEE
Confidence 32 2999999999999999999999999999999999999999999998843 3 44555577888888777 5999
Q ss_pred EEEcCCeEEEecChhH
Q 047682 365 ILISEGQIVFQGPREH 380 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~ 380 (1425)
++|++|++++.|+++.
T Consensus 215 ~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 215 HVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEETTEEEEEESHHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999999999873
No 67
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=4.9e-38 Score=344.96 Aligned_cols=198 Identities=20% Similarity=0.288 Sum_probs=169.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
-++++|+++.++ + .+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEh
Confidence 588899988762 3 699999999999999999999999999999999997653 489999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
. ..++.+||++|++.+++.+||+||+.+....+.. ... ++.++++++.++|.+. +.. +..|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~----~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN----KNEIMDALESVEVLDL-KKK-----LGELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC----HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH----HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHH
Confidence 4 3567799999999999999999999987654321 111 3457889999999877 554 4579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
|++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++...+|+++++.
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS 207 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC
Confidence 999999999999999999999999999999999999999766899999999997 4667788887664
No 68
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.7e-36 Score=342.21 Aligned_cols=197 Identities=17% Similarity=0.242 Sum_probs=165.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++||+|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 46999999999999999999999999999999999999998 999982 35799999998888899999
Q ss_pred HHHHhhhhhc-CCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 214 ETLAFSARCQ-GVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 214 E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
||+.++.... +.... + . .....+++.+++.+||++..+..+ ..
T Consensus 85 enl~~~~~~~~~~~~~-----------------~--~------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAK-----------------P--K------------SHDYQVAMQALDYLNLTHLAKREF-----TS 128 (253)
T ss_dssp HHHHGGGGGGSCTTCC-----------------C--C------------HHHHHHHHHHHHHTTCGGGTTSBG-----GG
T ss_pred HHHHHhhhhhcccccC-----------------C--C------------HHHHHHHHHHHHHcCChHHhcCCh-----hh
Confidence 9999864321 10000 0 0 011234677899999988777655 45
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+. +|+.++|+..++.++||++++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~-tvi~vtHd~~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNM-TVVFTTHQPNQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCC-EEEEEESCHHHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEecCHHHHHHhCCEEEEEeCCe-
Confidence 9999999999999999999999999999999999999999999998654344 45557888889999999999999999
Q ss_pred EEecChhHH
Q 047682 373 VFQGPREHV 381 (1425)
Q Consensus 373 v~~G~~~~~ 381 (1425)
++.|+++++
T Consensus 207 ~~~g~~~~~ 215 (253)
T 2nq2_C 207 FKFGETRNI 215 (253)
T ss_dssp EEEEEHHHH
T ss_pred EecCCHHHH
Confidence 999998876
No 69
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.6e-36 Score=345.42 Aligned_cols=221 Identities=21% Similarity=0.257 Sum_probs=172.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKL--DPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHI 207 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 207 (1425)
+++|+|||++|++|++++|+||||||||||||+|+|.. +|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 35999999999999999999999999999999999984 566 9999999998765432 23499999999999
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-cccccccc
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD-VCADTMVG 286 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg 286 (1425)
+.+||+|++.+...... ... . .+..+ ..+...+++++++.+||+ +..++.++
T Consensus 110 ~~~tv~e~~~~~~~~~~-------------~~~--~-~~~~~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~~ 162 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVR-------------SYR--G-QETLD-----------RFDFQDLMEEKIALLKMPEDLLTRSVN 162 (267)
T ss_dssp TTCBHHHHHHHHHHHHH-------------HGG--G-CCCCC-----------HHHHHHHHHHHHHHTTCCTTTTTSBTT
T ss_pred ccccHHHHHHHHHHhhh-------------hhh--c-cccCC-----------HHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 99999999987532100 000 0 00000 001123567889999996 45555443
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh-cCeEE
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL-FDDII 365 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~-~D~vi 365 (1425)
. .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ . +++|+.++|+..++..+ ||+|+
T Consensus 163 ~----~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~~d~v~ 236 (267)
T 2zu0_C 163 V----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-G-KRSFIIVTHYQRILDYIKPDYVH 236 (267)
T ss_dssp T----TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-S-SCEEEEECSSGGGGGTSCCSEEE
T ss_pred c----CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c-CCEEEEEeeCHHHHHhhcCCEEE
Confidence 1 4999999999999999999999999999999999999999999998743 3 44555578888777776 89999
Q ss_pred EEcCCeEEEecChhHHHHHHHhCCCC
Q 047682 366 LISEGQIVFQGPREHVLEFFKSMGFE 391 (1425)
Q Consensus 366 lL~~G~iv~~G~~~~~~~~F~~~G~~ 391 (1425)
+|++|++++.|+++++.. .+..||.
T Consensus 237 ~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 237 VLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred EEECCEEEEEcCHHHHhh-hhhcchh
Confidence 999999999999988754 3444443
No 70
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-37 Score=348.22 Aligned_cols=210 Identities=27% Similarity=0.410 Sum_probs=172.4
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ +++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhh
Confidence 56788887662 124689999999999999999999999999999999997653 4799999998764
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccccccc-------CCCCC
Q 047682 907 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLV-------GLPGV 976 (1425)
Q Consensus 907 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~-------g~~~~ 976 (1425)
. ..+++.+||++|++.+++ .||+||+.+... ..... +.++++++.+++.+..+... +. .+
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~----~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE----GDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGE-RG 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT----SCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEEST-TS
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc----CCCCH----HHHHHHHHHhChHHHHHhCccchhchhcc-Cc
Confidence 3 234567999999998887 599999976421 11222 33678889999987765432 22 24
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++ .+ +.+|++++|++ |
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEK-G 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEEC-C
Confidence 6899999999999999999999999999999999999999999999987 6999999999985 34 56999999997 6
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
+++..|+.
T Consensus 214 ~i~~~g~~ 221 (243)
T 1mv5_A 214 QITGSGKH 221 (243)
T ss_dssp EECCCSCH
T ss_pred EEEEeCCH
Confidence 78888875
No 71
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.2e-36 Score=342.01 Aligned_cols=197 Identities=23% Similarity=0.316 Sum_probs=168.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 211 (1425)
++|+|+|+++++|++++|+||||||||||||+|+|.++| . |+|.++|+++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 489999999999999999999999999999999999987 3 999999998754332 356999999988889999
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|+||+.++.. ... . ...++++++.+||++..+..+ .
T Consensus 90 v~e~l~~~~~-~~~----------~----------------------------~~~~~~~l~~~~l~~~~~~~~-----~ 125 (249)
T 2qi9_C 90 VWHYLTLHQH-DKT----------R----------------------------TELLNDVAGALALDDKLGRST-----N 125 (249)
T ss_dssp HHHHHHTTCS-STT----------C----------------------------HHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred HHHHHHHhhc-cCC----------c----------------------------HHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999998521 000 0 123567889999988777554 4
Q ss_pred cCChhhhhhHHHHHHHhcCCc-------EeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 292 GISGGQRKRVTTGEMLVGPAL-------ALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~-------illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
.|||||||||+|||||+.+|+ +++|||||+|||+.++..+.+.|+++.+. +. +|+.++|+..++.+++|++
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~-tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GL-AIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TC-EEEEECSCHHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CC-EEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999 99999999999999999999999998653 44 4555788888888999999
Q ss_pred EEEcCCeEEEecChhHH
Q 047682 365 ILISEGQIVFQGPREHV 381 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~ 381 (1425)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998876
No 72
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=7.5e-37 Score=348.72 Aligned_cols=209 Identities=22% Similarity=0.351 Sum_probs=164.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|||+.|++|++++|+||||||||||||+|+|+++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 45899999999999999999999999999999999999998 9999999998765432 357999999887776 6
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHh--CCcccccccccCc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVL--GLDVCADTMVGDE 288 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~~t~vg~~ 288 (1425)
||+||+.++..... . .+ + ..++. ....++..++.+ ||+...+..
T Consensus 108 tv~enl~~~~~~~~--~-~~---~------------------~~~~~------~~~~~~~~l~~l~~gl~~~~~~~---- 153 (271)
T 2ixe_A 108 SFRENIAYGLTRTP--T-ME---E------------------ITAVA------MESGAHDFISGFPQGYDTEVGET---- 153 (271)
T ss_dssp BHHHHHHTTCSSCC--C-HH---H------------------HHHHH------HHHTCHHHHHHSTTGGGSBCCGG----
T ss_pred cHHHHHhhhcccCC--h-HH---H------------------HHHHH------HHHhHHHHHHhhhcchhhhhcCC----
Confidence 99999998642110 0 00 0 00000 011234567777 666554443
Q ss_pred ccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 289 MLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+..+.| ||.++|+..++. .||+|++|+
T Consensus 154 -~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~t-viivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 154 -GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRT-VLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp -GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSE-EEEECSCHHHHT-TCSEEEEEE
T ss_pred -cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCE-EEEEeCCHHHHH-hCCEEEEEE
Confidence 45699999999999999999999999999999999999999999999875433445 455677777665 599999999
Q ss_pred CCeEEEecChhHHHH
Q 047682 369 EGQIVFQGPREHVLE 383 (1425)
Q Consensus 369 ~G~iv~~G~~~~~~~ 383 (1425)
+|++++.|+++++.+
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988754
No 73
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=7.6e-37 Score=343.91 Aligned_cols=202 Identities=23% Similarity=0.356 Sum_probs=165.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---ccceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 210 (1425)
.++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++||+|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 45899999999999999999999999999999999999998 999999999886533 2467999999987776 5
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc-------
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADT------- 283 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t------- 283 (1425)
||+||+.++... . . + ...++.+++.+|+.+..+.
T Consensus 91 tv~enl~~~~~~-~--~---------------------~---------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG-D--Y---------------------T---------------DEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS-C--S---------------------C---------------HHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC-C--C---------------------C---------------HHHHHHHHHHhChHHHHHhCccchhc
Confidence 999999885210 0 0 0 1123456777787765443
Q ss_pred cccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 284 MVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 284 ~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
.++ +....|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+++. .+.|+|+ ++|+...+ ..||+
T Consensus 132 ~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~-vtH~~~~~-~~~d~ 206 (243)
T 1mv5_A 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLV-IAHRLSTI-VDADK 206 (243)
T ss_dssp EES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEE-ECCSHHHH-HHCSE
T ss_pred hhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEE-EeCChHHH-HhCCE
Confidence 333 3356799999999999999999999999999999999999999999999985 2555555 67776665 56999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 047682 364 IILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 364 vilL~~G~iv~~G~~~~~~~ 383 (1425)
|++|++|++++.|+++++.+
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999988753
No 74
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.2e-36 Score=341.08 Aligned_cols=194 Identities=20% Similarity=0.181 Sum_probs=165.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEE-EEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAA-YISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 212 (1425)
+++|+|+|++++ |++++|+||||||||||||+|+|.+ |+ +|+|.++|+++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 469999999999 9999999999999999999999999 98 999999998875321246799 99998765 8999
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-ccccccccCcccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD-VCADTMVGDEMLR 291 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~ 291 (1425)
+||+.++.+... .....++.+++.+||+ +..+..+ .
T Consensus 91 ~enl~~~~~~~~--------------------------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~ 127 (263)
T 2pjz_A 91 NDIVYLYEELKG--------------------------------------LDRDLFLEMLKALKLGEEILRRKL-----Y 127 (263)
T ss_dssp HHHHHHHHHHTC--------------------------------------CCHHHHHHHHHHTTCCGGGGGSBG-----G
T ss_pred HHHHHHhhhhcc--------------------------------------hHHHHHHHHHHHcCCChhHhcCCh-----h
Confidence 999998643210 0012356788999998 7766554 4
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcC-eEEEEcCC
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFD-DIILISEG 370 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D-~vilL~~G 370 (1425)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++. + +++.++|+..++.++|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~----~-tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG----K-EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC----S-EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc----C-cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 699999999999999999999999999999999999999999998752 2 55557888888899999 99999999
Q ss_pred eEEEecChhHHH
Q 047682 371 QIVFQGPREHVL 382 (1425)
Q Consensus 371 ~iv~~G~~~~~~ 382 (1425)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
No 75
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.1e-36 Score=384.78 Aligned_cols=208 Identities=23% Similarity=0.405 Sum_probs=167.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
.++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.+++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 45899999999999999999999999999999999999998 9999999999876543 4679999998877755
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++... .+.+...+++...+. +.. .-.+++..||.+|+++.
T Consensus 430 tv~eni~~~~~~-------------------------~~~~~~~~~~~~~~~------~~~--~~~lp~g~~t~~~~~g~ 476 (578)
T 4a82_A 430 TVKENILLGRPT-------------------------ATDEEVVEAAKMANA------HDF--IMNLPQGYDTEVGERGV 476 (578)
T ss_dssp BHHHHHGGGCSS-------------------------CCHHHHHHHHHHTTC------HHH--HHTSTTGGGCBCCGGGT
T ss_pred cHHHHHhcCCCC-------------------------CCHHHHHHHHHHhCc------HHH--HHhCcchhhhhhccCCC
Confidence 999999986321 011111111111100 011 12467778999987654
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+|||||||||+|||||+.+|++++|||||||||+.++..+.+.++++.+ ++|+|+ ++|+...+ +.||+|++|++|
T Consensus 477 -~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~-itH~l~~~-~~~d~i~~l~~G 551 (578)
T 4a82_A 477 -KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLI-VAHRLSTI-THADKIVVIENG 551 (578)
T ss_dssp -TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEE-ECSSGGGT-TTCSEEEEEETT
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEE-EecCHHHH-HcCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999988743 556555 67776665 569999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+++++|+++++.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 76
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.7e-36 Score=341.77 Aligned_cols=206 Identities=18% Similarity=0.220 Sum_probs=171.6
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++.. ...+.+|+|+|++++ ||+++|+|||||||||||++|+|.. + .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECc
Confidence 5678888776310 011569999999999 9999999999999999999999986 4 4899999998754
Q ss_pred cccccceEE-EeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCcCCHHHH
Q 047682 907 QETFARISG-YCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVSGLSTEQR 984 (1425)
Q Consensus 907 ~~~~~~~~g-yv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGqr 984 (1425)
....++.+| |++|++.+ .+||+||+.+...+. ... ++.++++++.++|. +..+.. +..||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRK-----LYKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSB-----GGGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCC-----hhhCCHHHH
Confidence 311255789 99999877 899999999876443 111 24478899999998 877766 357999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcC-EEEEEeCCcEEEEECC
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD-~v~~l~~Gg~~~y~G~ 1063 (1425)
||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ |||++||+++ ++.+.+| ++++|++ |++++.|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecC
Confidence 999999999999999999999999999999999999998753 9999999986 4667899 9999996 68888887
Q ss_pred C
Q 047682 1064 L 1064 (1425)
Q Consensus 1064 ~ 1064 (1425)
.
T Consensus 210 ~ 210 (263)
T 2pjz_A 210 V 210 (263)
T ss_dssp H
T ss_pred H
Confidence 5
No 77
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.8e-36 Score=341.06 Aligned_cols=211 Identities=26% Similarity=0.377 Sum_probs=170.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++. ...+.+|+|||++|++||++||+||||||||||+++|+|... + +|+|.++|.+.
T Consensus 17 ~l~i~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPK----------QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTT----------CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCC----------CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 3889999987731 011469999999999999999999999999999999999865 3 79999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR-------QSLVGLPG 975 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~~ 975 (1425)
.. ..+++.+||++|++.+++ .||+||+.++.. .... +.+.++++.+++.+.. ++.++..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~- 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNK- 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSS-
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccCC-
Confidence 43 234567999999998876 599999987421 1121 2356677777775543 2223322
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
+..||||||||++|||||+.+|+||+|||||+|||+.++..+++.|+++.+ |+|||+++|+++. + +.+|++++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-
Confidence 468999999999999999999999999999999999999999999999864 8999999999873 4 56999999997
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 229 G~i~~~g~~ 237 (260)
T 2ghi_A 229 GKIVEKGTH 237 (260)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 688888875
No 78
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.1e-36 Score=382.26 Aligned_cols=208 Identities=26% Similarity=0.369 Sum_probs=167.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-G 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-E
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-c
Confidence 45899999999999999999999999999999999999998 9999999999877653 467999999887775 5
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++... .+.+...+++...+ .+..+ -.+++..||.+|+++.
T Consensus 432 tv~eni~~~~~~-------------------------~~~~~~~~~~~~~~------~~~~i--~~l~~g~~~~~~~~~~ 478 (587)
T 3qf4_A 432 TIKENLKWGRED-------------------------ATDDEIVEAAKIAQ------IHDFI--ISLPEGYDSRVERGGR 478 (587)
T ss_dssp EHHHHHTTTCSS-------------------------CCHHHHHHHHHHTT------CHHHH--HTSSSGGGCEECSSSC
T ss_pred cHHHHHhccCCC-------------------------CCHHHHHHHHHHhC------cHHHH--HhcccchhhHhcCCCC
Confidence 999999986321 01111111111000 01111 2466778899987554
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+||||||||++|||||+.+|++++||||||+||+.++..+.+.++++. .++|+|+ ++|+...+ ..||+|++|++|
T Consensus 479 -~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~-itH~l~~~-~~~d~i~vl~~G 553 (587)
T 3qf4_A 479 -NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFI-ITQKIPTA-LLADKILVLHEG 553 (587)
T ss_dssp -SSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEE-EESCHHHH-TTSSEEEEEETT
T ss_pred -CcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEE-EecChHHH-HhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999873 2555555 66776655 689999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+++++|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
No 79
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=359.34 Aligned_cols=199 Identities=23% Similarity=0.250 Sum_probs=162.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
.++|+|||++|++||+++|+|||||||||||++|+|+++ + +|+|.++|++++.... ++.++||+|+..+++ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 458999999999999999999999999999999999987 6 8999999999887654 378999999988776 6
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc------
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTM------ 284 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~------ 284 (1425)
||+||+.+.... ...+++++++.+||.+..+..
T Consensus 109 tv~enl~~~~~~-----------------------------------------~~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAAH-----------------------------------------SDQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCCS-----------------------------------------CHHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhcccc-----------------------------------------CHHHHHHHHHHhCCHHHHhhccccccc
Confidence 999999742110 011244567777877654443
Q ss_pred -ccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 285 -VGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 285 -vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
+++. ...|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. .+ ++++.++|+. +....+|+
T Consensus 148 ~i~~~-g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~-~tvi~vtHd~-e~~~~aDr 222 (390)
T 3gd7_A 148 VLVDG-GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--AD-CTVILCEARI-EAMLECDQ 222 (390)
T ss_dssp EECTT-TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TT-SCEEEECSSS-GGGTTCSE
T ss_pred ccccc-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CC-CEEEEEEcCH-HHHHhCCE
Confidence 3322 23499999999999999999999999999999999999999999998753 24 4455567775 56677999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 047682 364 IILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 364 vilL~~G~iv~~G~~~~~~~ 383 (1425)
|++|++|+|+..|+++++.+
T Consensus 223 i~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 223 FLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEEETTEEEEESSHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999854
No 80
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1e-35 Score=377.54 Aligned_cols=204 Identities=23% Similarity=0.424 Sum_probs=166.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 432 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-C 432 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-C
Confidence 45999999999999999999999999999999999999998 9999999999877543 467999999887775 5
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhC-------Ccccccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLG-------LDVCADT 283 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~~t 283 (1425)
||+||+.++..... ..+.+ .++++++.+| +++..||
T Consensus 433 tv~eni~~~~~~~~----------------------~~~~~---------------~~~~~~~~~~l~~~~~~l~~g~~~ 475 (595)
T 2yl4_A 433 SIAENIAYGADDPS----------------------SVTAE---------------EIQRVAEVANAVAFIRNFPQGFNT 475 (595)
T ss_dssp BHHHHHHTTSSSTT----------------------TSCHH---------------HHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred CHHHHHhhcCCCcc----------------------ccCHH---------------HHHHHHHHcCCHHHHHhCcccccc
Confidence 99999998642100 00111 1223333333 5667899
Q ss_pred cccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 284 MVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 284 ~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
.+|+++ ..|||||||||+|||||+.+|++++|||||||||+.++..+.+.|+++.+ ++|+|+ ++|+...+ +.||+
T Consensus 476 ~~~~~~-~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~-itH~~~~~-~~~d~ 550 (595)
T 2yl4_A 476 VVGEKG-VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLV-IAHRLSTI-KNANM 550 (595)
T ss_dssp BCSSSS-CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEE-ECCCHHHH-HHSSE
T ss_pred cccCCC-CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEE-EecCHHHH-HcCCE
Confidence 998765 46999999999999999999999999999999999999999999999854 555555 56766555 56999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 047682 364 IILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 364 vilL~~G~iv~~G~~~~~~~ 383 (1425)
|++|++|+++++|+++++.+
T Consensus 551 i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 551 VAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp EEEEETTEEEEEECSCC---
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998853
No 81
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.5e-35 Score=336.03 Aligned_cols=200 Identities=23% Similarity=0.352 Sum_probs=160.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|||++|++|++++|+||||||||||||+|+|.+++ +|+|.++|+++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 3589999999999999999999999999999999999874 7999999998765432 367999999987775 6
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHh-------CCcccccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVL-------GLDVCADT 283 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~~t 283 (1425)
||+||+.++... .. .+ .+..+++.+ ++++..||
T Consensus 108 tv~enl~~~~~~----~~---------------------~~---------------~~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKLD----AT---------------------DE---------------EVIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCTT----CC---------------------HH---------------HHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCCC----CC---------------------HH---------------HHHHHHHHhCCHHHHHhccccccc
Confidence 999999985210 00 00 011222233 35556677
Q ss_pred cccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 284 MVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 284 ~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
.++. .+..|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+++.+ ++|+|+ ++|+...+ +.||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tvii-vtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLII-IAHRLSTI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEE-ECSSGGGS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEE-EcCCHHHH-HhCCE
Confidence 6654 4567999999999999999999999999999999999999999999998842 455544 67776665 46999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 047682 364 IILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 364 vilL~~G~iv~~G~~~~~~~ 383 (1425)
|++|++|++++.|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988754
No 82
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.4e-36 Score=328.77 Aligned_cols=188 Identities=19% Similarity=0.275 Sum_probs=155.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHH
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
++|+|+|+++++|++++|+||||||||||||+|+|.++|+ +|+|.++|.++. ..++.++|++|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 6999999999999999999999999999999999999998 999999998875 24578999999998899999999
Q ss_pred HHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 047682 215 TLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294 (1425)
Q Consensus 215 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LS 294 (1425)
|+.++....+. . .+ ...++++++.+||++. +.. +..||
T Consensus 98 nl~~~~~~~~~-~----------------------------------~~-~~~~~~~l~~~gl~~~-~~~-----~~~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-K----------------------------------VN-KNEIMDALESVEVLDL-KKK-----LGELS 135 (214)
T ss_dssp HHHHHHHHTTC-C----------------------------------CC-HHHHHHHHHHTTCCCT-TSB-----GGGSC
T ss_pred HHHHHHHhcCC-c----------------------------------hH-HHHHHHHHHHcCCCcC-CCC-----hhhCC
Confidence 99987543210 0 00 1235678899999865 544 45699
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. +.|+|+ ++|+..++..++|+|++ ..|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiii-vtHd~~~~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVII-SSREELSYCDVNENLHK-YSTKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEE-EESSCCTTSSEEEEGGG-GBC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEE-EeCCHHHHHHhCCEEEE-eCCcc
Confidence 99999999999999999999999999999999999999999998653 455554 67888888888888764 44544
No 83
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.7e-36 Score=377.79 Aligned_cols=208 Identities=23% Similarity=0.346 Sum_probs=166.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
.++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.++ +.
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF-ST 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCC-SS
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCccc-cc
Confidence 35899999999999999999999999999999999999998 9999999999876543 46799999987766 56
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++.... +.+...+++...+ .+..+ -.+++..||.+|+++.
T Consensus 444 tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~------~~~~~--~~~~~g~~t~~~~~g~ 490 (598)
T 3qf4_B 444 TVKENLKYGNPGA-------------------------TDEEIKEAAKLTH------SDHFI--KHLPEGYETVLTDNGE 490 (598)
T ss_dssp BHHHHHHSSSTTC-------------------------CTTHHHHHTTTTT------CHHHH--HTSTTGGGCBCHHHHT
T ss_pred cHHHHHhcCCCCC-------------------------CHHHHHHHHHHhC------CHHHH--HhccccccchhcCCCC
Confidence 9999999863210 0011111111110 01111 2456677899986554
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+|||||||||+|||||+.+|++++||||||+||+.++..+.+.++++.+ ++|+|+ ++|+...+ +.||+|++|++|
T Consensus 491 -~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~-itH~l~~~-~~~d~i~~l~~G 565 (598)
T 3qf4_B 491 -DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKTSII-IAHRLNTI-KNADLIIVLRDG 565 (598)
T ss_dssp -TSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT--TSEEEE-ESCCTTHH-HHCSEEEEECSS
T ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC--CCEEEE-EecCHHHH-HcCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999998742 556555 56666665 559999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+++++|+++++.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999874
No 84
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4e-36 Score=410.16 Aligned_cols=210 Identities=22% Similarity=0.358 Sum_probs=172.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
.++|+|||++|+|||.+||+||+|||||||+++|.|+++|+ +|+|.+||+++++... |+.++||||++.+| +.
T Consensus 1092 ~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF-~g 1167 (1321)
T 4f4c_A 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF-DC 1167 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCC-SE
T ss_pred CccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEee-Cc
Confidence 45999999999999999999999999999999999999998 9999999999998764 57899999977665 56
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||||||.|+..- ++.+.+++.+++...+- .+. .-.|++..||.||+++.
T Consensus 1168 TIreNI~~gld~-----------------------~~~sd~ei~~Al~~a~l-----~~~---I~~Lp~GldT~vge~G~ 1216 (1321)
T 4f4c_A 1168 SIAENIIYGLDP-----------------------SSVTMAQVEEAARLANI-----HNF---IAELPEGFETRVGDRGT 1216 (1321)
T ss_dssp EHHHHHSSSSCT-----------------------TTSCHHHHHHHHHHTTC-----HHH---HHTSTTTTCSEETTTSC
T ss_pred cHHHHHhccCCC-----------------------CCCCHHHHHHHHHHhCC-----hHH---HHcCcCCCCCEecCCCc
Confidence 999999986321 11223334444332221 111 13578899999998766
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+||||||||++|||||+++|+||+||||||+||++|...|.+.|++.. .++|+|+ +.|. ..+...||+|+||++|
T Consensus 1217 -~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~-IAHR-LsTi~~aD~I~Vld~G 1291 (1321)
T 4f4c_A 1217 -QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIV-IAHR-LNTVMNADCIAVVSNG 1291 (1321)
T ss_dssp -SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEE-ECSS-SSTTTTCSEEEEESSS
T ss_pred -ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEE-eccC-HHHHHhCCEEEEEECC
Confidence 599999999999999999999999999999999999999999998763 2555555 5554 4567789999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+|+++|+|+++++
T Consensus 1292 ~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1292 TIIEKGTHTQLMS 1304 (1321)
T ss_dssp SEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999985
No 85
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.4e-35 Score=328.42 Aligned_cols=200 Identities=21% Similarity=0.347 Sum_probs=159.7
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++. +++.+|+|||++|++||++||+|||||||||||++|+|..++ .+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CccEEEECC---
Confidence 4788999887631 234699999999999999999999999999999999998653 489999998
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccccc-------ccCCCCCCc
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS-------LVGLPGVSG 978 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~g~~~~~~ 978 (1425)
.+||++|++.+++. ||+||+.+... .... ..+++++.+++.+..+. .++.+ +..
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 37999999988885 99999987421 1111 13345555555443222 22222 468
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
||||||||++|||+|+.+|++|+|||||+|||+.++..+++. ++++. +|+|||+++|+++ .+ +.+|++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999997 45554 4899999999985 34 56999999997 67
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
+++.|+.
T Consensus 207 i~~~g~~ 213 (229)
T 2pze_A 207 SYFYGTF 213 (229)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 8888875
No 86
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2e-35 Score=373.92 Aligned_cols=209 Identities=24% Similarity=0.377 Sum_probs=164.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|+|+++++||+++|+||||||||||+|+|+|.++|+ +|+|.+||+++++... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 35899999999999999999999999999999999999998 9999999999876542 467999999887776 5
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++.. .. .+.+.+.+++...+ .+..++ .+++..||.+|+++
T Consensus 432 tv~eni~~~~~-~~-----------------------~~~~~~~~~~~~~~------l~~~~~--~~p~g~~t~~~~~~- 478 (582)
T 3b5x_A 432 TIANNIAYAAE-GE-----------------------YTREQIEQAARQAH------AMEFIE--NMPQGLDTVIGENG- 478 (582)
T ss_pred cHHHHHhccCC-CC-----------------------CCHHHHHHHHHHCC------CHHHHH--hCcccccchhcCCC-
Confidence 99999998631 00 00011111111000 011111 24456789998764
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|+ ++|+...+ +.||+|++|++|
T Consensus 479 ~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~-itH~~~~~-~~~d~i~~l~~G 554 (582)
T 3b5x_A 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLV-IAHRLSTI-EQADEILVVDEG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEE-EecCHHHH-HhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999998743 556555 56666555 579999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+++++|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 555 EIIERGRHADLLA 567 (582)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 87
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.5e-35 Score=373.09 Aligned_cols=209 Identities=23% Similarity=0.379 Sum_probs=166.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 35899999999999999999999999999999999999998 9999999999876543 467999999887776 5
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++.. .. .+.+.+.+++...+ .+..++ .+++..||.+|+++
T Consensus 432 tv~eni~~~~~-~~-----------------------~~~~~~~~~l~~~~------l~~~~~--~~p~g~~~~~~~~~- 478 (582)
T 3b60_A 432 TVANNIAYART-EE-----------------------YSREQIEEAARMAY------AMDFIN--KMDNGLDTIIGENG- 478 (582)
T ss_dssp BHHHHHHTTTT-SC-----------------------CCHHHHHHHHHTTT------CHHHHH--HSTTGGGSBCCTTS-
T ss_pred CHHHHHhccCC-CC-----------------------CCHHHHHHHHHHcC------CHHHHH--hccccccccccCCC-
Confidence 99999998631 00 00111111111100 011112 24556789998764
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
..|||||||||+|||||+.+|++++|||||||||+.++..+.+.++++.+ ++|+|+ ++|+...+ +.||+|++|++|
T Consensus 479 ~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~-itH~~~~~-~~~d~i~~l~~G 554 (582)
T 3b60_A 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLV-IAHRLSTI-EQADEIVVVEDG 554 (582)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEE-ECSCGGGT-TTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEE-EeccHHHH-HhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999999853 566555 56666554 579999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+++++|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b60_A 555 IIVERGTHSELLA 567 (582)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999999864
No 88
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.8e-36 Score=355.57 Aligned_cols=210 Identities=20% Similarity=0.285 Sum_probs=175.3
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++. +++.+|+|||++|++||+++|+|||||||||||++|+|..+ .+|+|.++|.+.
T Consensus 19 ~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i 84 (390)
T 3gd7_A 19 QMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSW 84 (390)
T ss_dssp CEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBT
T ss_pred eEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEEC
Confidence 5899999988731 23569999999999999999999999999999999999764 479999999886
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCC------CCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGL------PGV 976 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~------~~~ 976 (1425)
.. ..+++.+|||+|++.+++ +||+||+.+.. ... ++.++++++.++|.+..+..... ...
T Consensus 85 ~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g 153 (390)
T 3gd7_A 85 DSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153 (390)
T ss_dssp TSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTT
T ss_pred CcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhccccccccccccc
Confidence 43 234578999999999987 69999995321 112 23478899999998877765331 112
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
..|||||||||+|||||+.+|++|||||||||||+.++..+++.|+++. .|+|||+++|+++ ....+|+|++|++ |
T Consensus 154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~-G 229 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE-N 229 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-T
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-C
Confidence 3499999999999999999999999999999999999999999999864 5899999999974 4567999999996 6
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
+++..|++
T Consensus 230 ~i~~~g~~ 237 (390)
T 3gd7_A 230 KVRQYDSI 237 (390)
T ss_dssp EEEEESSH
T ss_pred EEEEECCH
Confidence 89999986
No 89
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=329.20 Aligned_cols=199 Identities=23% Similarity=0.382 Sum_probs=157.5
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++. +++.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 788899887731 12469999999999999999999999999999999999865 4689999998
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCCCCCcC
Q 047682 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR-------QSLVGLPGVSGL 979 (1425)
Q Consensus 907 ~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~~~~~l 979 (1425)
.+||++|++. ++.+||+||+.+.... ..+. .+++++.+++.+.. ++..+. .+..|
T Consensus 67 ------~i~~v~Q~~~-~~~~tv~enl~~~~~~------~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAW-IQNDSLRENILFGCQL------EEPY----YRSVIQACALLPDLEILPSGDRTEIGE-KGVNL 128 (237)
T ss_dssp ------CEEEECSSCC-CCSEEHHHHHHTTSCC------CTTH----HHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCC
T ss_pred ------EEEEEcCCCc-CCCcCHHHHhhCcccc------CHHH----HHHHHHHHhhHHHHHhccccccccccC-CCCCC
Confidence 2799999986 4688999999875321 1111 23334444432211 112222 25689
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~---~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
|||||||++|||||+.+|++|+|||||+|||+.++..+++.|+ ++. +|+|||+++|+++. + +.+|++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 343 48999999999873 3 57999999997 6
Q ss_pred EEEEECCC
Q 047682 1057 YEIYVGPL 1064 (1425)
Q Consensus 1057 ~~~y~G~~ 1064 (1425)
+++..|+.
T Consensus 205 ~i~~~g~~ 212 (237)
T 2cbz_A 205 KISEMGSY 212 (237)
T ss_dssp EEEEEECH
T ss_pred EEEEeCCH
Confidence 88888875
No 90
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.5e-35 Score=327.21 Aligned_cols=196 Identities=24% Similarity=0.338 Sum_probs=150.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
+++|+|+|+++++|++++|+||||||||||||+|+|.++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 45899999999999999999999999999999999999998 99999998 49999999887775 999
Q ss_pred HHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 047682 214 ETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293 (1425)
Q Consensus 214 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 293 (1425)
||+.++.... . ....+ ..+.. ..+..++. ++...+|.+++ ....|
T Consensus 87 enl~~~~~~~----~-~~~~~------------------~~~~~---------~l~~~~~~--~~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----E-YRYRS------------------VIKAC---------QLEEDISK--FAEKDNIVLGE-GGITL 131 (229)
T ss_dssp HHHHTTSCCC----H-HHHHH------------------HHHHT---------TCHHHHTT--STTGGGSCBCT-TCTTS
T ss_pred HHhhccCCcC----h-HHHHH------------------HHHHh---------CcHHHHHh--CcccccccccC-CCCcC
Confidence 9999863210 0 00000 00000 00111221 22333455553 35679
Q ss_pred ChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHH-HHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 294 SGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSL-RQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 294 SGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L-~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
||||||||+|||||+.+|++++|||||+|||+.++..+++.+ +++. .+.| ++.++|+..++ ..||++++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~t-vi~vtH~~~~~-~~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKT-RILVTSKMEHL-KKADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSE-EEEECCCHHHH-HHCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCE-EEEEcCChHHH-HhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999863 4442 2445 45467777665 46999999999999
Q ss_pred EEecChhHHH
Q 047682 373 VFQGPREHVL 382 (1425)
Q Consensus 373 v~~G~~~~~~ 382 (1425)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998875
No 91
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=329.37 Aligned_cols=196 Identities=23% Similarity=0.332 Sum_probs=151.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
+++|+|+|++|++|++++|+||||||||||||+|+|.++|+ +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 45899999999999999999999999999999999999998 99999999 4999999865 5789999
Q ss_pred HHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCC-cccccccccCccccc
Q 047682 214 ETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGL-DVCADTMVGDEMLRG 292 (1425)
Q Consensus 214 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~~t~vg~~~~~~ 292 (1425)
||+.++.... ..+ .+...++ ..+++.+++ +...+|.++ +.+..
T Consensus 84 enl~~~~~~~--~~~---------------------~~~~~~~------------~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE--EPY---------------------YRSVIQA------------CALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC--TTH---------------------HHHHHHH------------TTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC--HHH---------------------HHHHHHH------------HhhHHHHHhcccccccccc-CCCCC
Confidence 9999863210 000 0000000 001223333 222344444 34567
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHH---HHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLR---QIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~---~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+ ++. .+.|+ +.++|+...+ +.||+|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tv-iivtH~~~~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTR-ILVTHSMSYL-PQVDVIIVMSG 203 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEE-EEECSCSTTG-GGSSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEE-EEEecChHHH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999884 332 24454 4466776665 57999999999
Q ss_pred CeEEEecChhHHHH
Q 047682 370 GQIVFQGPREHVLE 383 (1425)
Q Consensus 370 G~iv~~G~~~~~~~ 383 (1425)
|++++.|+++++.+
T Consensus 204 G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 204 GKISEMGSYQELLA 217 (237)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEeCCHHHHhh
Confidence 99999999988754
No 92
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.2e-34 Score=367.73 Aligned_cols=216 Identities=26% Similarity=0.359 Sum_probs=178.0
Q ss_pred e-EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 826 S-LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 826 ~-l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
. ++++|+++.++. .+++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~----------~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~ 407 (595)
T 2yl4_A 340 GALEFKNVHFAYPA----------RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGHD 407 (595)
T ss_dssp CCEEEEEEEEECSS----------CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEEeCC----------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCEE
Confidence 5 899999998841 112469999999999999999999999999999999999866 358999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCCC
Q 047682 905 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-------RQSLVGLP 974 (1425)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 974 (1425)
..+ ..+++.+|||+|++.+++ .||+||+.++...+ ...+ ++.++++++.+++.+. .|+.+|..
T Consensus 408 i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~ 480 (595)
T 2yl4_A 408 IRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEK 480 (595)
T ss_dssp TTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS
T ss_pred hhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccCC
Confidence 653 335667999999998886 59999998753210 0122 2346788888887654 35555544
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
..+||||||||++|||||+++|++|+|||||||||+.++..+++.|+++.+ |+|||+++|+++ ..+.+|++++|++
T Consensus 481 -~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~ 556 (595)
T 2yl4_A 481 -GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS--TIKNANMVAVLDQ 556 (595)
T ss_dssp -SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH--HHHHSSEEEEEET
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHcCCEEEEEEC
Confidence 467999999999999999999999999999999999999999999999876 899999999986 3456999999997
Q ss_pred CcEEEEECCCC
Q 047682 1055 GGYEIYVGPLG 1065 (1425)
Q Consensus 1055 Gg~~~y~G~~~ 1065 (1425)
|+++..|+..
T Consensus 557 -G~i~~~g~~~ 566 (595)
T 2yl4_A 557 -GKITEYGKHE 566 (595)
T ss_dssp -TEEEEEECSC
T ss_pred -CEEEEECCHH
Confidence 6888999864
No 93
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.9e-35 Score=369.76 Aligned_cols=212 Identities=21% Similarity=0.313 Sum_probs=173.9
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
..++++|+++.++. +.+.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC--SEEEEEESSSB
T ss_pred CcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEECCEE
Confidence 46999999998741 234699999999999999999999999999999999998663 58999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcc-------ccccccCCC
Q 047682 905 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNP-------LRQSLVGLP 974 (1425)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~ 974 (1425)
..+ ..+++.+|||+|++.+++. ||+||+.++. .+.+.+ .+.++++..++.+ -.|+.+|..
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~-----~~~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~~~~~ 476 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGR-----EDATDD----EIVEAAKIAQIHDFIISLPEGYDSRVERG 476 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTC-----SSCCHH----HHHHHHHHTTCHHHHHTSSSGGGCEECSS
T ss_pred cccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccC-----CCCCHH----HHHHHHHHhCcHHHHHhcccchhhHhcCC
Confidence 654 3456789999999988865 9999997642 122222 2344555555543 234445543
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +|+|+|+++|+++ ....+|+|++|++
T Consensus 477 -~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~~ 552 (587)
T 3qf4_A 477 -GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLHE 552 (587)
T ss_dssp -SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEET
T ss_pred -CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999975 5899999999986 3468999999996
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 553 -G~i~~~g~~ 561 (587)
T 3qf4_A 553 -GKVAGFGTH 561 (587)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 689999986
No 94
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.4e-34 Score=363.50 Aligned_cols=212 Identities=24% Similarity=0.368 Sum_probs=174.8
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
..++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 338 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 46999999998742 234699999999999999999999999999999999998663 58999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCCC
Q 047682 905 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPL-------RQSLVGLP 974 (1425)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 974 (1425)
..+ ...++.+|||+|++.+++. ||+||+.++. + +.+. +.+.++++..++.+. .|+.+|..
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~ 474 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGER 474 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred hhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccC
Confidence 653 3456789999999988876 9999998752 1 2222 235566666666543 34444433
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
..+||||||||++|||||+++|++|+|||||||||+.++..+.+.++++. +|+|+|+++|+++. .+.+|++++|++
T Consensus 475 -g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~~ 550 (578)
T 4a82_A 475 -GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIEN 550 (578)
T ss_dssp -GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEET
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999885 58999999999974 466999999996
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 551 -G~i~~~g~~ 559 (578)
T 4a82_A 551 -GHIVETGTH 559 (578)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 789999986
No 95
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.3e-34 Score=364.21 Aligned_cols=212 Identities=24% Similarity=0.321 Sum_probs=176.1
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|++++++. +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~~ 407 (582)
T 3b5x_A 341 EVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHDV 407 (582)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEh
Confidence 5899999998741 124699999999999999999999999999999999997653 479999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccc-------cccCCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ-------SLVGLPG 975 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-------~~~g~~~ 975 (1425)
.+ ..+++.+|||+|++.+++. ||+||+.++.. + +.+ ++.++++++.+++.+..+ +.+|..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~- 477 (582)
T 3b5x_A 408 RDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN- 477 (582)
T ss_pred hhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC-
Confidence 43 3456789999999988874 99999987531 1 222 234678888888876543 334433
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
..+||||||||++|||||+++|++|+|||||||||+.++..+++.|+++.+ |+|+|+++|+++ ..+.+|++++|++
T Consensus 478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~- 553 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVDE- 553 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 467999999999999999999999999999999999999999999999864 999999999986 3457999999997
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 554 G~i~~~g~~ 562 (582)
T 3b5x_A 554 GEIIERGRH 562 (582)
T ss_pred CEEEEECCH
Confidence 688898875
No 96
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.8e-34 Score=363.51 Aligned_cols=212 Identities=23% Similarity=0.311 Sum_probs=176.3
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~ 407 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDL 407 (582)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEET
T ss_pred cEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC--CCCeEEECCEEc
Confidence 5899999988741 124699999999999999999999999999999999998663 489999999886
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCCC
Q 047682 906 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLR-------QSLVGLPG 975 (1425)
Q Consensus 906 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~~ 975 (1425)
.+ ..+++.+|||+|++.+++. ||+||+.++.. .+.+. +.++++++.+++.+.. |+.+|..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~----~~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~- 477 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFND-TVANNIAYART----EEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGEN- 477 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT----SCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred cccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC----CCCCH----HHHHHHHHHcCCHHHHHhccccccccccCC-
Confidence 43 3456679999999988875 99999987531 12222 3467788888886543 3445543
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
..+||||||||++|||||+++|++|+|||||||||+.++..+++.|+++.+ |+|+|+++|+++. .+.+|++++|++
T Consensus 478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~- 553 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVED- 553 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEEC-
Confidence 467999999999999999999999999999999999999999999999865 9999999999973 467999999997
Q ss_pred cEEEEECCC
Q 047682 1056 GYEIYVGPL 1064 (1425)
Q Consensus 1056 g~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 554 G~i~~~g~~ 562 (582)
T 3b60_A 554 GIIVERGTH 562 (582)
T ss_dssp TEEEEEECH
T ss_pred CEEEEecCH
Confidence 688898875
No 97
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.9e-34 Score=362.64 Aligned_cols=211 Identities=26% Similarity=0.393 Sum_probs=171.9
Q ss_pred ceEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCcc
Q 047682 825 LSLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYP 904 (1425)
Q Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~ 904 (1425)
..++++|+++.++ +++++|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 353 ~~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCEE
Confidence 3699999998874 234699999999999999999999999999999999998763 48999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccc-------cccCCC
Q 047682 905 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQ-------SLVGLP 974 (1425)
Q Consensus 905 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-------~~~g~~ 974 (1425)
..+ ..+++.+|||+|++.+++ .||+||+.++. + +.+.+ .++++++.+++.+..+ +.+|..
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~ 488 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGN----P-GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTDN 488 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSS----T-TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHHH
T ss_pred hhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCC----C-CCCHH----HHHHHHHHhCCHHHHHhccccccchhcCC
Confidence 653 345678999999998885 59999998742 1 22222 2455566666554333 223321
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 975 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 975 ~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|+++|+++. + +.+|+|++|++
T Consensus 489 -g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~ 564 (598)
T 3qf4_B 489 -GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRD 564 (598)
T ss_dssp -HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECS
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 25799999999999999999999999999999999999999999999986 59999999999973 4 56999999997
Q ss_pred CcEEEEECCC
Q 047682 1055 GGYEIYVGPL 1064 (1425)
Q Consensus 1055 Gg~~~y~G~~ 1064 (1425)
|+++..|+.
T Consensus 565 -G~i~~~g~~ 573 (598)
T 3qf4_B 565 -GEIVEMGKH 573 (598)
T ss_dssp -SSEEECSCH
T ss_pred -CEEEEECCH
Confidence 678999986
No 98
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.9e-33 Score=321.15 Aligned_cols=195 Identities=23% Similarity=0.380 Sum_probs=147.8
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.++++|+++.. +.+|+|+|++|++||++||+|||||||||||++|+|..+ +.+|+|.++|
T Consensus 40 ~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp ----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 47778877531 358999999999999999999999999999999999865 4689999988
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCcccccc-------ccCCCCCCc
Q 047682 906 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQS-------LVGLPGVSG 978 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~g~~~~~~ 978 (1425)
.+||++|++.+++. ||+||+. +. + .... .++++++.+++.+..+. .++. .+..
T Consensus 100 -------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMPG-TIKENII-GV--S----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGIT 159 (290)
T ss_dssp -------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cchH----HHHHHHHHhChHHHHHhccccccchhcC-ccCc
Confidence 37999999988875 9999997 31 1 1111 23445566666543222 2222 1457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcE
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1057 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~ 1057 (1425)
||||||||++|||+|+.+|++|+|||||+|||+.++..+++.+ +++. +|+|||+++|+++ .+ +.+|++++|++ |+
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~-G~ 235 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GS 235 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEEC-Ce
Confidence 9999999999999999999999999999999999999999974 4554 4899999999985 34 56999999996 67
Q ss_pred EEEECCC
Q 047682 1058 EIYVGPL 1064 (1425)
Q Consensus 1058 ~~y~G~~ 1064 (1425)
+++.|+.
T Consensus 236 i~~~g~~ 242 (290)
T 2bbs_A 236 SYFYGTF 242 (290)
T ss_dssp EEEEECH
T ss_pred EEEeCCH
Confidence 8888876
No 99
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.3e-33 Score=321.97 Aligned_cols=194 Identities=24% Similarity=0.328 Sum_probs=146.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHH
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
++|+|+|++|++|++++|+||||||||||||+|+|.++|+ +|+|.++| .++|++|++.+++ .||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMP-GTIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCS-SBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCc-ccHHH
Confidence 5899999999999999999999999999999999999998 99999998 4999999987776 49999
Q ss_pred HHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 047682 215 TLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294 (1425)
Q Consensus 215 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LS 294 (1425)
|+. +... .. .... ...+.. ..+..++. ++...++.++. ....||
T Consensus 118 nl~-~~~~----~~-~~~~------------------~~~~~~---------~l~~~l~~--~~~~~~~~~~~-~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSY----DE-YRYR------------------SVIKAC---------QLEEDISK--FAEKDNIVLGE-GGITLS 161 (290)
T ss_dssp HHH-TTCC----CH-HHHH------------------HHHHHT---------TCHHHHHT--STTGGGCBC-----CCCC
T ss_pred Hhh-Cccc----ch-HHHH------------------HHHHHh---------ChHHHHHh--ccccccchhcC-ccCcCC
Confidence 998 4210 00 0000 000000 00112222 22233455543 355799
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHH-HHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSL-RQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIV 373 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L-~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 373 (1425)
|||||||+|||||+.+|++++|||||+|||+.++..+++.+ +++. .+.| |+.++|+...+ ..||+|++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~t-viivtHd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKT-RILVTSKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSE-EEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCE-EEEEecCHHHH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999864 4442 2444 55567777665 569999999999999
Q ss_pred EecChhHHH
Q 047682 374 FQGPREHVL 382 (1425)
Q Consensus 374 ~~G~~~~~~ 382 (1425)
+.|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999998875
No 100
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.98 E-value=2.7e-32 Score=371.66 Aligned_cols=210 Identities=21% Similarity=0.341 Sum_probs=168.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 210 (1425)
.++|+|+|++|+|||+++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.++ +.
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ 1121 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DC 1121 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SS
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCccc-cc
Confidence 35899999999999999999999999999999999999998 9999999999987653 46799999987655 67
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||+||+.++..... .+.+.+.+++...+ .+.. .-.+++..||.||+++.
T Consensus 1122 ti~eNi~~~~~~~~-----------------------~~~~~i~~~~~~~~------~~~~--i~~l~~gldt~vge~G~ 1170 (1284)
T 3g5u_A 1122 SIAENIAYGDNSRV-----------------------VSYEEIVRAAKEAN------IHQF--IDSLPDKYNTRVGDKGT 1170 (1284)
T ss_dssp BHHHHHTCCCSSCC-----------------------CCHHHHHHHHHHHT------CHHH--HSSTTTGGGCBCSTTSC
T ss_pred cHHHHHhccCCCCC-----------------------CCHHHHHHHHHHhC------cHHH--HHhCccccccccCCCCC
Confidence 99999998642110 01111111111100 0111 12467788999997654
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
.|||||||||+|||||+.+|+||+|||||+|||+.++..|.+.|++.. .++| ++.++|+.+++ ..||+|++|++|
T Consensus 1171 -~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~t-vi~isH~l~~i-~~~dri~vl~~G 1245 (1284)
T 3g5u_A 1171 -QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRT-CIVIAHRLSTI-QNADLIVVIQNG 1245 (1284)
T ss_dssp -SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSC-EEEECSCTTGG-GSCSEEEEEETB
T ss_pred -ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCE-EEEEecCHHHH-HcCCEEEEEECC
Confidence 699999999999999999999999999999999999999999998752 2444 45577887776 559999999999
Q ss_pred eEEEecChhHHHH
Q 047682 371 QIVFQGPREHVLE 383 (1425)
Q Consensus 371 ~iv~~G~~~~~~~ 383 (1425)
+++++|+++++++
T Consensus 1246 ~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1246 KVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
No 101
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=4.4e-30 Score=322.85 Aligned_cols=191 Identities=25% Similarity=0.281 Sum_probs=160.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRET 215 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 215 (1425)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++ +.++|++|+....+.+||+|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~----------~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWD----------LTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCCC----------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEEe----------eEEEEEecCccCCCCCcHHHH
Confidence 577888889999999999999999999999999999998 9999762 369999998777788999998
Q ss_pred HHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 047682 216 LAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISG 295 (1425)
Q Consensus 216 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSG 295 (1425)
+....... + .....++.+++.+||.+..+..++ .|||
T Consensus 438 ~~~~~~~~-----~---------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 474 (607)
T 3bk7_A 438 LSKIDSSK-----L---------------------------------NSNFYKTELLKPLGIIDLYDRNVE-----DLSG 474 (607)
T ss_dssp HHHHHHHH-----H---------------------------------HCHHHHHHTHHHHTCTTTTTSBGG-----GCCH
T ss_pred HHhhhccC-----C---------------------------------CHHHHHHHHHHHcCCchHhcCChh-----hCCH
Confidence 86531000 0 001235678899999877776654 5999
Q ss_pred hhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC--CeEE
Q 047682 296 GQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE--GQIV 373 (1425)
Q Consensus 296 GqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~--G~iv 373 (1425)
||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++++..++| ++.++|+..++..+||+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t-vi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT-ALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 99999999999999999999999999999999999999999987654555 55578999999999999999986 8889
Q ss_pred EecChhHHHH
Q 047682 374 FQGPREHVLE 383 (1425)
Q Consensus 374 ~~G~~~~~~~ 383 (1425)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 102
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=5.4e-30 Score=319.22 Aligned_cols=191 Identities=24% Similarity=0.279 Sum_probs=159.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRET 215 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 215 (1425)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++ ..++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~----------~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWD----------LTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCCC----------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEC----------ceEEEEecCCcCCCCCcHHHH
Confidence 577778888999999999999999999999999999998 9999752 369999998777788999988
Q ss_pred HHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 047682 216 LAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISG 295 (1425)
Q Consensus 216 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSG 295 (1425)
+....... + .....++.+++.+||.+..++.++ .|||
T Consensus 368 ~~~~~~~~-----~---------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----L---------------------------------NSNFYKTELLKPLGIIDLYDREVN-----ELSG 404 (538)
T ss_dssp HHHHHHHH-----H---------------------------------TCHHHHHHTTTTTTCGGGTTSBGG-----GCCH
T ss_pred HHhhhccC-----C---------------------------------CHHHHHHHHHHHcCChhhhcCChh-----hCCH
Confidence 76431100 0 001235567888999877666554 5999
Q ss_pred hhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC--CeEE
Q 047682 296 GQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE--GQIV 373 (1425)
Q Consensus 296 GqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~--G~iv 373 (1425)
||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..++| |+.++|+..++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~t-vi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT-ALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCE-EEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 99999999999999999999999999999999999999999987544555 45578999999999999999986 8899
Q ss_pred EecChhHHHH
Q 047682 374 FQGPREHVLE 383 (1425)
Q Consensus 374 ~~G~~~~~~~ 383 (1425)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 103
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=1.6e-29 Score=313.97 Aligned_cols=192 Identities=20% Similarity=0.223 Sum_probs=158.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRET 215 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 215 (1425)
.|+++|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|. .++|++|+....+.+||+|+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSCC---------CEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCe---------eeEeechhcccccCCCHHHH
Confidence 466778889999999999999999999999999999998 999998763 68999998766678999999
Q ss_pred HHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 047682 216 LAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISG 295 (1425)
Q Consensus 216 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSG 295 (1425)
+.+..... . .. ....++.+++.+||.+..+..++ .|||
T Consensus 351 l~~~~~~~-----~---------------~~-----------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 388 (538)
T 3ozx_A 351 LENASKDA-----L---------------ST-----------------SSWFFEEVTKRLNLHRLLESNVN-----DLSG 388 (538)
T ss_dssp HHHHCSST-----T---------------CT-----------------TSHHHHHTTTTTTGGGCTTSBGG-----GCCH
T ss_pred HHHhhhhc-----c---------------ch-----------------hHHHHHHHHHHcCCHHHhcCChh-----hCCH
Confidence 98632100 0 00 01124567888999877776554 5999
Q ss_pred hhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC--CeEE
Q 047682 296 GQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE--GQIV 373 (1425)
Q Consensus 296 GqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~--G~iv 373 (1425)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++..+ ++|+.++|+..++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g-~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERK-AVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 999999999999999999999999999999999999999999976544 4555579999999999999999986 6677
Q ss_pred EecChhHHH
Q 047682 374 FQGPREHVL 382 (1425)
Q Consensus 374 ~~G~~~~~~ 382 (1425)
..|++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777765543
No 104
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.8e-29 Score=313.56 Aligned_cols=192 Identities=26% Similarity=0.258 Sum_probs=159.5
Q ss_pred eeeeceEEEEeCC-----eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCC
Q 047682 135 TILKDVNGIVKPS-----RLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGE 209 (1425)
Q Consensus 135 ~iL~~vs~~i~~G-----~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 209 (1425)
.+++|+|+++++| |+++|+||||||||||+++|+|+++|+ +|+. + .+..++|++|+......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCCC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccCC
Confidence 5799999999999 779999999999999999999999998 7862 1 13469999998766677
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
.||+|++....+ +. + ......+.+++.+||.+..+..++
T Consensus 428 ~tv~e~~~~~~~--~~---~---------------------------------~~~~~~~~~l~~l~l~~~~~~~~~--- 466 (608)
T 3j16_B 428 GTVRQLFFKKIR--GQ---F---------------------------------LNPQFQTDVVKPLRIDDIIDQEVQ--- 466 (608)
T ss_dssp SBHHHHHHHHCS--ST---T---------------------------------TSHHHHHHTHHHHTSTTTSSSBSS---
T ss_pred ccHHHHHHHHhh--cc---c---------------------------------ccHHHHHHHHHHcCChhhhcCChh---
Confidence 899998753211 00 0 001134567899999887776654
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++..+.| |+.++|+..++..++|+|++|++
T Consensus 467 --~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~t-viivtHdl~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 467 --HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKT-AFIVEHDFIMATYLADKVIVFEG 543 (608)
T ss_dssp --SCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCE-EEEECSCHHHHHHHCSEEEECEE
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEeC
Confidence 599999999999999999999999999999999999999999999987655555 45579999999999999999986
Q ss_pred --CeEEEecChhHHHH
Q 047682 370 --GQIVFQGPREHVLE 383 (1425)
Q Consensus 370 --G~iv~~G~~~~~~~ 383 (1425)
|+++..|++++++.
T Consensus 544 ~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 544 IPSKNAHARAPESLLT 559 (608)
T ss_dssp ETTTEEECCCCEEHHH
T ss_pred CCCeEEecCChHHHhh
Confidence 99999999998875
No 105
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.96 E-value=4.6e-32 Score=339.24 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=115.5
Q ss_pred eEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhh
Q 047682 859 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAW 938 (1425)
Q Consensus 859 s~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~ 938 (1425)
++.+++|++++|+|+||||||||++.++|.... .|+ +.+.|++|+.. ..+.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 458999999999999999999999999985321 011 13456666541 12222221
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH-----H
Q 047682 939 LRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 1013 (1425)
Q Consensus 939 lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~-----~ 1013 (1425)
+.. .+. ++ +...|+..+.+.. +..|||||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~g--~~~-------~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SWG--MDF-------EE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TTS--CCH-------HH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -HcC--CCH-------HH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 111 221 22 2245665555543 3579999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCcc---------HHHHHhcCEEEEEeCC
Q 047682 1014 AAIVMRTVRNTVDTGRTVVCTIHQPS---------IDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 1014 ~~~i~~~l~~~~~~g~tvi~~~H~~~---------~~~~~~fD~v~~l~~G 1055 (1425)
+..+.+.++.+++.|.|||+++|++. ..+..++|+|++|++|
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEE
Confidence 99999999999888999999999971 2356689999999874
No 106
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=1.7e-28 Score=317.27 Aligned_cols=193 Identities=19% Similarity=0.268 Sum_probs=156.6
Q ss_pred eEEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 826 SLTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
.+...|+++.++ ++.+|+|+|+++++|++++|+|||||||||||++|+| |.| +|.+.
T Consensus 435 ~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 466667777662 3579999999999999999999999999999999994 111 34432
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCcCCHHH
Q 047682 906 KQETFARISGYCEQND-IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSLVGLPGVSGLSTEQ 983 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~lSgGq 983 (1425)
.. ...++|++|+. .+++.+||.|++.+ ... .. ++.++++++.+|+. +..+..+ ..|||||
T Consensus 492 ~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGq 553 (986)
T 2iw3_A 492 QE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGW 553 (986)
T ss_dssp TT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHH
T ss_pred cc---ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHH
Confidence 21 12368999874 67789999999975 111 11 34578999999994 5666664 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEE-EEC
Q 047682 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI-YVG 1062 (1425)
Q Consensus 984 rqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~-y~G 1062 (1425)
|||++||++|+.+|+||+|||||+|||+.++..+++.|++ .|+|||+++|++. .+.+.+|++++|++| +++ |.|
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G-~iv~~~G 628 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGL-KLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETT-EEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECC-eeecCCC
Confidence 9999999999999999999999999999999999999988 5899999999986 577889999999974 554 788
Q ss_pred CC
Q 047682 1063 PL 1064 (1425)
Q Consensus 1063 ~~ 1064 (1425)
+.
T Consensus 629 ~~ 630 (986)
T 2iw3_A 629 NF 630 (986)
T ss_dssp CH
T ss_pred CH
Confidence 76
No 107
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=2e-28 Score=315.11 Aligned_cols=205 Identities=22% Similarity=0.288 Sum_probs=133.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHH---------------------hhhcCCCCC--ceE---EEEEEEcCccC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTG--GYI---TGNIKISGYPK 905 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl---------------------~~l~g~~~~--~~~---~G~i~i~g~~~ 905 (1425)
+.+|+|||++|++||++||+||||||||||+ +++.|...+ +.+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3589999999999999999999999999997 555553322 122 35677777653
Q ss_pred CcccccceEEEeecCCC-------------------CCCCCCHHHHHHHHhhccCCCCCCHHHHHH------HHHHHHHH
Q 047682 906 KQETFARISGYCEQNDI-------------------HSPNVTVYESLLYSAWLRLPPDVDSETRRM------FLEEIMEL 960 (1425)
Q Consensus 906 ~~~~~~~~~gyv~Q~~~-------------------~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~------~v~~~l~~ 960 (1425)
... .++.+||++|... .++.+||+||+.+...+..... .....+. ...++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 221 1233455555432 2357899999987533221110 0000000 11235788
Q ss_pred cCCccc-cccccCCCCCCcCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 047682 961 VELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037 (1425)
Q Consensus 961 l~l~~~-~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~--illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1037 (1425)
+||.+. .+.. +..|||||||||+|||||+.+|+ +|+|||||+|||+.++..+++.|+++.++|.|||+++|+
T Consensus 189 ~gL~~~~~~~~-----~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRS-----AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCB-----GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCC-----cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 898764 4555 34799999999999999999998 999999999999999999999999998889999999999
Q ss_pred ccHHHHHhcCEEEEEe-----CCcEEEEECCCC
Q 047682 1038 PSIDIFEAFDELFLMK-----RGGYEIYVGPLG 1065 (1425)
Q Consensus 1038 ~~~~~~~~fD~v~~l~-----~Gg~~~y~G~~~ 1065 (1425)
+. ....+|++++|. ++|++++.|++.
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~ 294 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPE 294 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHH
Confidence 85 456799999993 357889999864
No 108
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=4.5e-24 Score=276.37 Aligned_cols=110 Identities=24% Similarity=0.310 Sum_probs=91.3
Q ss_pred HHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCC---cEeEEecCCCCCChHHHHHHHHHHHHHHHhcC
Q 047682 267 VTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPA---LALFMDEISTGLDSSTTFQIVTSLRQIIHILN 343 (1425)
Q Consensus 267 ~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p---~illLDEptsgLD~~t~~~i~~~L~~~~~~~~ 343 (1425)
.+..+|+.+||... .+| +....|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++.+ .|
T Consensus 784 ~~~~~L~~vGL~~~---~lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G 858 (916)
T 3pih_A 784 RTLQVLHDVGLGYV---KLG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RG 858 (916)
T ss_dssp HHHHHHHHTTGGGS---BTT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHcCCchh---hcc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cC
Confidence 45678999999742 222 334569999999999999999865 79999999999999999999999999875 35
Q ss_pred CEEEEEEecChhhHHhhcCeEEEE------cCCeEEEecChhHHHH
Q 047682 344 GTAVISLLQPAPETYDLFDDIILI------SEGQIVFQGPREHVLE 383 (1425)
Q Consensus 344 ~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~~ 383 (1425)
.|+ |.++|+...+ ..||+|++| ++|+|+++|+++++.+
T Consensus 859 ~TV-IvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 859 NTV-IVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp CEE-EEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CEE-EEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 554 5578888665 569999999 8999999999999863
No 109
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.91 E-value=1.3e-24 Score=278.45 Aligned_cols=107 Identities=24% Similarity=0.279 Sum_probs=90.7
Q ss_pred HHHHHHHhCCcc-cccccccCcccccCChhhhhhHHHHHHHhcCC---cEeEEecCCCCCChHHHHHHHHHHHHHHHhcC
Q 047682 268 TDYVIKVLGLDV-CADTMVGDEMLRGISGGQRKRVTTGEMLVGPA---LALFMDEISTGLDSSTTFQIVTSLRQIIHILN 343 (1425)
Q Consensus 268 ~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p---~illLDEptsgLD~~t~~~i~~~L~~~~~~~~ 343 (1425)
...+|+.+||.. ..+..+ ..|||||||||+||++|+.+| ++|||||||+|||..+...+++.|+++++ .+
T Consensus 825 ~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G 898 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NG 898 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 456899999976 444444 469999999999999999865 99999999999999999999999999865 34
Q ss_pred CEEEEEEecChhhHHhhcCeEEEE------cCCeEEEecChhHHH
Q 047682 344 GTAVISLLQPAPETYDLFDDIILI------SEGQIVFQGPREHVL 382 (1425)
Q Consensus 344 ~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 382 (1425)
.| |+.++|+.+++ ..||+|++| ++|++++.|+++++.
T Consensus 899 ~T-VIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 899 DT-VLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp CE-EEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CE-EEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 44 55578888765 689999999 789999999999885
No 110
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.91 E-value=4.2e-24 Score=274.79 Aligned_cols=108 Identities=23% Similarity=0.259 Sum_probs=91.0
Q ss_pred HHHHHHHhCCcc-cccccccCcccccCChhhhhhHHHHHHHhcCC---cEeEEecCCCCCChHHHHHHHHHHHHHHHhcC
Q 047682 268 TDYVIKVLGLDV-CADTMVGDEMLRGISGGQRKRVTTGEMLVGPA---LALFMDEISTGLDSSTTFQIVTSLRQIIHILN 343 (1425)
Q Consensus 268 ~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p---~illLDEptsgLD~~t~~~i~~~L~~~~~~~~ 343 (1425)
...+|+.+||.. ..+.. +..|||||||||+||++|+.+| ++|||||||+|||..+...+.+.|+++++ .+
T Consensus 843 ~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G 916 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KG 916 (993)
T ss_dssp HHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 457899999976 34443 4469999999999999999864 99999999999999999999999999865 34
Q ss_pred CEEEEEEecChhhHHhhcCeEEEE------cCCeEEEecChhHHHH
Q 047682 344 GTAVISLLQPAPETYDLFDDIILI------SEGQIVFQGPREHVLE 383 (1425)
Q Consensus 344 ~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~~ 383 (1425)
.| |+.++|+..++ +.||+|++| ++|++++.|+++++.+
T Consensus 917 ~T-VIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 917 NT-VIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp CE-EEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CE-EEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 44 55578888775 789999999 6899999999998854
No 111
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.91 E-value=4e-24 Score=274.68 Aligned_cols=108 Identities=20% Similarity=0.277 Sum_probs=92.7
Q ss_pred HHHHHHHHhCCccc-ccccccCcccccCChhhhhhHHHHHHHhcC---CcEeEEecCCCCCChHHHHHHHHHHHHHHHhc
Q 047682 267 VTDYVIKVLGLDVC-ADTMVGDEMLRGISGGQRKRVTTGEMLVGP---ALALFMDEISTGLDSSTTFQIVTSLRQIIHIL 342 (1425)
Q Consensus 267 ~~~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRvsia~al~~~---p~illLDEptsgLD~~t~~~i~~~L~~~~~~~ 342 (1425)
+++.+|+.+||... .+. .+..|||||||||+||++|+.+ |++|||||||+|||..+...+.+.|+++++ .
T Consensus 709 ~~~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCcccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 56788999999763 343 3456999999999999999996 799999999999999999999999999875 3
Q ss_pred CCEEEEEEecChhhHHhhcCeEEEE------cCCeEEEecChhHHH
Q 047682 343 NGTAVISLLQPAPETYDLFDDIILI------SEGQIVFQGPREHVL 382 (1425)
Q Consensus 343 ~~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 382 (1425)
++ +|+.++|+.+++ +.||+|++| ++|++++.|+++++.
T Consensus 783 G~-tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 GN-TVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TC-EEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CC-EEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 44 555578888888 889999999 799999999999874
No 112
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.8e-26 Score=278.07 Aligned_cols=186 Identities=11% Similarity=0.031 Sum_probs=142.6
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc-E-EEECCccCCCCCccceEEEEccCC---CCCCCCCH
Q 047682 138 KDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSG-R-VTYNGHNMDEFVPQRTAAYISQHD---VHIGEMTV 212 (1425)
Q Consensus 138 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~-V~~~G~~~~~~~~~~~~~yv~Q~d---~~~~~lTV 212 (1425)
.++|+.+++|++++|+||||||||||+|+|+|.+.|+ +| + |.++|. +++.++|++|+. .+...+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 4799999999999999999999999999999999887 99 9 999982 356799999986 35567899
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+||+ |+......... .+ .++.+++.+||++..+ ...
T Consensus 200 ~eni-~~~~~~~~~~~---------~~---------------------------~~~~ll~~~gl~~~~~-------~~~ 235 (460)
T 2npi_A 200 QLPT-WGQSLTSGATL---------LH---------------------------NKQPMVKNFGLERINE-------NKD 235 (460)
T ss_dssp TCTT-CSCBCBSSCCS---------SC---------------------------CBCCEECCCCSSSGGG-------CHH
T ss_pred hhhh-cccccccCcch---------HH---------------------------HHHHHHHHhCCCcccc-------hhh
Confidence 9999 76432100000 00 0112455677776544 346
Q ss_pred CChhhhhhHHHHHH--HhcCCcE----eEEec-CCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChh-----hHHhh
Q 047682 293 ISGGQRKRVTTGEM--LVGPALA----LFMDE-ISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAP-----ETYDL 360 (1425)
Q Consensus 293 LSGGqrqRvsia~a--l~~~p~i----llLDE-ptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~-----~~~~~ 360 (1425)
|||||||||++|++ |+.+|++ +|||| ||+|||.. ...+.+.++ ..+.|+|+++|++.+ ++.++
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~----~~~~tviiVth~~~~~l~~~~~~~~ 310 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIE----KLNVNIMLVLCSETDPLWEKVKKTF 310 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHH----HTTCCEEEEECCSSCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHH----HhCCCEEEEEccCchhhhHHHHHHh
Confidence 99999999999999 9999999 99999 99999999 444444443 346676665555441 56689
Q ss_pred cCe-----EEEEc-CCeEEEecChhHHH
Q 047682 361 FDD-----IILIS-EGQIVFQGPREHVL 382 (1425)
Q Consensus 361 ~D~-----vilL~-~G~iv~~G~~~~~~ 382 (1425)
+|+ |++|+ +|+++ .|+++++.
T Consensus 311 ~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 311 GPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred cccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999 99999 99999 99987663
No 113
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.90 E-value=1.8e-23 Score=254.71 Aligned_cols=202 Identities=18% Similarity=0.163 Sum_probs=139.3
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC-----------------c-------------------eEEE
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-----------------G-------------------YITG 896 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~-----------------~-------------------~~~G 896 (1425)
.+++++|+.+.+| +++|+|||||||||||++|.+...+ + ...|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3689999999999 9999999999999999999542210 0 0157
Q ss_pred EEEEcCccCCcc---cc-cceEEEeecCCCCCCCCCHHHHHHHHhhccC-----------------------CCCCC---
Q 047682 897 NIKISGYPKKQE---TF-ARISGYCEQNDIHSPNVTVYESLLYSAWLRL-----------------------PPDVD--- 946 (1425)
Q Consensus 897 ~i~i~g~~~~~~---~~-~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~-----------------------~~~~~--- 946 (1425)
.+.+||.+.+.. .. ...+++++|++.++.. +..+...|--.... .....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 899999886542 12 2348999998776543 55554443221100 00000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCcccc----------------cc---ccCC---
Q 047682 947 -------------------------------SETRRMFLEEIMELVELNPLR----------------QS---LVGL--- 973 (1425)
Q Consensus 947 -------------------------------~~~~~~~v~~~l~~l~l~~~~----------------~~---~~g~--- 973 (1425)
.+...+.+++.++.+++.... +. ....
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000112344455556554310 00 0110
Q ss_pred ---CCCCc-CCHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcC
Q 047682 974 ---PGVSG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1047 (1425)
Q Consensus 974 ---~~~~~-lSgGqrqRl~ia~~L~~~p--~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD 1047 (1425)
..++. ||||||||++||++|+.+| ++|+|||||+|||+.++..+.+.|++++ +|+|||+|||+| ++.+.+|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 01122 6999999999999999999 9999999999999999999999999997 589999999998 4568899
Q ss_pred EEEEE----eCCcEEEE
Q 047682 1048 ELFLM----KRGGYEIY 1060 (1425)
Q Consensus 1048 ~v~~l----~~Gg~~~y 1060 (1425)
++++| ++ |+++-
T Consensus 364 ~i~~l~k~~~~-G~~~~ 379 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVS 379 (415)
T ss_dssp EEEEEEEEEET-TEEEE
T ss_pred eEEEEEEeccC-CceEE
Confidence 99999 75 45443
No 114
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.5e-26 Score=276.01 Aligned_cols=196 Identities=14% Similarity=0.054 Sum_probs=147.5
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEE-E-EEEcCccCCcccccceEEEeecCCC---CCCCCCHH
Q 047682 856 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-N-IKISGYPKKQETFARISGYCEQNDI---HSPNVTVY 930 (1425)
Q Consensus 856 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gyv~Q~~~---~~~~lTv~ 930 (1425)
.++|+.+++|++++|+||||||||||+|+|+|... +..| + |.+||. .++.++|++|+.. +.+.+||+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 37999999999999999999999999999999764 3468 8 999983 2456899999874 44568999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHH--HhhCCcE----EEEeC
Q 047682 931 ESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE--LVANPSI----IFMDE 1004 (1425)
Q Consensus 931 E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~--L~~~p~i----llLDE 1004 (1425)
||+ |........ .. ++.+.++++.+|+.+..+ ...|||||||||+||++ |+.+|++ |+|||
T Consensus 201 eni-~~~~~~~~~--~~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGA--TL---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSC--CS---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCc--ch---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 654321111 10 122456677788876654 24799999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc--H---HHHHhcCE-----EEEEeCCcEEEEECCCCCC----ch
Q 047682 1005 -PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFEAFDE-----LFLMKRGGYEIYVGPLGRH----SS 1069 (1425)
Q Consensus 1005 -PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~--~---~~~~~fD~-----v~~l~~Gg~~~y~G~~~~~----~~ 1069 (1425)
||+|||+. ...+.+.++++ |.|+|+++|+.+ . ++.+++|+ |++|++.|+++ .|+.... ..
T Consensus 268 pPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~ 342 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRT 342 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHH
T ss_pred CcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHH
Confidence 99999999 55566555543 789999999986 2 34578899 99998334556 7875421 12
Q ss_pred hHHHHHhh
Q 047682 1070 HLISYFEA 1077 (1425)
Q Consensus 1070 ~~~~yf~~ 1077 (1425)
.+.+||..
T Consensus 343 ~i~~~f~g 350 (460)
T 2npi_A 343 SIREYFYG 350 (460)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhCC
Confidence 45567754
No 115
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.88 E-value=4.8e-23 Score=250.93 Aligned_cols=237 Identities=16% Similarity=0.137 Sum_probs=148.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-----------------------------------CCcc
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS-----------------------------------LKLS 178 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----------------------------------~~~~ 178 (1425)
..+++++|+.+.+| +++|+|||||||||||++|.+...+. ..-+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45799999999999 99999999999999999997765420 0116
Q ss_pred cEEEECCccCCCCCc----cceEEEEccCCCCCCCCCHHHHHHhhhhhcCC-----CCcchhhhHhhHHhhhcCCCCC--
Q 047682 179 GRVTYNGHNMDEFVP----QRTAAYISQHDVHIGEMTVRETLAFSARCQGV-----GSRYDMLVELSRREKDANIKPD-- 247 (1425)
Q Consensus 179 G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~-----~~~~~~~~~~~~~e~~~~~~~~-- 247 (1425)
|++.+||++++.... ...+++++|++.++.. +..+...|--..... ...|....++.+..........
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999998764222 1348999998655433 665555543211100 0000000011000000000000
Q ss_pred -C-------ChHHHHHHHh-----------hhhhhhhHHHHHHHHHhCCcccc----------------cc---cccC--
Q 047682 248 -P-------DIDVFMKALA-----------TEGQEASVVTDYVIKVLGLDVCA----------------DT---MVGD-- 287 (1425)
Q Consensus 248 -~-------~~~~~~~~~~-----------~~~~~~~~~~~~~l~~lgL~~~~----------------~t---~vg~-- 287 (1425)
+ ..+.+.+.+. .........++..++.++++... +. .+..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 0 0111111000 01122334556677777776411 00 1111
Q ss_pred ----ccccc-CChhhhhhHHHHHHHhcCC--cEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh
Q 047682 288 ----EMLRG-ISGGQRKRVTTGEMLVGPA--LALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360 (1425)
Q Consensus 288 ----~~~~~-LSGGqrqRvsia~al~~~p--~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~ 360 (1425)
..++. |||||||||+||++|+.+| ++|||||||+|||+.+...+.+.|+++. .++++|+ ++|.. ++.+.
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~-itH~~-~~~~~ 361 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLV-VTHLA-QIAAR 361 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEE-ECSCH-HHHTT
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEE-EeCcH-HHHhh
Confidence 12222 6999999999999999999 9999999999999999999999999985 2555555 56665 66789
Q ss_pred cCeEEEE----cCCeEEEec
Q 047682 361 FDDIILI----SEGQIVFQG 376 (1425)
Q Consensus 361 ~D~vilL----~~G~iv~~G 376 (1425)
||++++| ++|+++...
T Consensus 362 ~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 362 AHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp CSEEEEEEEEEETTEEEEEE
T ss_pred cCeEEEEEEeccCCceEEEE
Confidence 9999999 999987653
No 116
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.85 E-value=6e-21 Score=227.18 Aligned_cols=81 Identities=22% Similarity=0.368 Sum_probs=74.3
Q ss_pred CCcCCHHHHHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEE
Q 047682 976 VSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1049 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v 1049 (1425)
+..||||||||++||++|+ .+|++|||||||+|||+.+...+++.|+++.+.|+|||+++|+++ ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 4579999999999999999 799999999999999999999999999999888999999999985 46789999
Q ss_pred EEEeCCcEEE
Q 047682 1050 FLMKRGGYEI 1059 (1425)
Q Consensus 1050 ~~l~~Gg~~~ 1059 (1425)
++|++ |+++
T Consensus 355 ~~l~~-G~i~ 363 (365)
T 3qf7_A 355 LRITG-GVVV 363 (365)
T ss_dssp EEEET-TEEC
T ss_pred EEEEC-CEEE
Confidence 99997 5654
No 117
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.85 E-value=2.1e-24 Score=236.07 Aligned_cols=143 Identities=15% Similarity=0.143 Sum_probs=96.8
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 047682 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVY 930 (1425)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 930 (1425)
++.+|+|| ++||+++|+||||||||||+++|+|. .+ .+|+|............++.+||++|++ +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVSRIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCSEEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeeeeEEecCCchhhhcceEEecCCH--------H
Confidence 35688886 89999999999999999999999997 42 1233311000111123456789999976 4
Q ss_pred HHH-HHHh----hccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 047682 931 ESL-LYSA----WLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1005 (1425)
Q Consensus 931 E~l-~~~~----~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEP 1005 (1425)
||+ .+.. .+.. ... ++.++++++. + + |||||++|||+|+.+|++|+||||
T Consensus 77 enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEP 131 (208)
T 3b85_A 77 EKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEA 131 (208)
T ss_dssp ---CTTTHHHHHHHTT--TSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSG
T ss_pred HHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCC
Confidence 444 2211 1110 011 1224455543 2 2 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 047682 1006 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1039 (1425)
Q Consensus 1006 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1039 (1425)
|+| ++..+++.|+++ ++|+||| +||+++
T Consensus 132 ts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 132 QNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred ccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 999 888999999988 6689999 999975
No 118
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.84 E-value=3.3e-21 Score=226.13 Aligned_cols=87 Identities=22% Similarity=0.217 Sum_probs=75.7
Q ss_pred CCcCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEE--
Q 047682 976 VSGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL-- 1049 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~----~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v-- 1049 (1425)
+..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. .|.|||+++|+++ +.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 4579999999999999997 6889999999999999999999999999985 5899999999974 67889987
Q ss_pred EEEeCCcEEEEECCCC
Q 047682 1050 FLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1050 ~~l~~Gg~~~y~G~~~ 1065 (1425)
++|.+|...+.....+
T Consensus 294 v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEESSSCEEEEECCC-
T ss_pred EEEeCCEEEEEEEEcc
Confidence 8888877777766553
No 119
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.84 E-value=2.8e-22 Score=213.17 Aligned_cols=143 Identities=13% Similarity=0.185 Sum_probs=101.1
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCC-CCCCHHHHHHH
Q 047682 857 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHS-PNVTVYESLLY 935 (1425)
Q Consensus 857 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~-~~lTv~E~l~~ 935 (1425)
|||+++++||+++|+||||||||||++++.+... . +++ + ...|+++|+.... ..-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--~------~~~-----d---~~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--V------ISS-----D---FCRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--E------EEH-----H---HHHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--E------Ecc-----H---HHHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999774211 1 111 0 1126667764210 0001111111
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH---
Q 047682 936 SAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 1012 (1425)
Q Consensus 936 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~--- 1012 (1425)
... +.....+.....+.. ...|+|||||++||++++.+|++|+|||||+|||+.
T Consensus 64 ----------------~~~-~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YIV-SKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HHH-HHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HHH-HHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 111 122234544444432 236999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCEEEEEecCcc
Q 047682 1013 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPS 1039 (1425)
Q Consensus 1013 -------------~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1039 (1425)
....+++.|+++.++|.|+|+++|+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 668899999888777999999999975
No 120
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.83 E-value=5e-23 Score=225.12 Aligned_cols=160 Identities=16% Similarity=0.164 Sum_probs=98.5
Q ss_pred CccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCC--CCCccceEEEEccCCCC
Q 047682 129 SRKKKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMD--EFVPQRTAAYISQHDVH 206 (1425)
Q Consensus 129 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~~~~~~~yv~Q~d~~ 206 (1425)
+..+++.+|+|+ ++|++++|+|||||||||||++|+|. +|+ +|+|.. .+.. ....++.++|++|++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~--~~~~~~~~~~~~~ig~v~q~~-- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSR--IILTRPAVEAGEKLGFLPGTL-- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSE--EEEEECSCCTTCCCCSSCC----
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeee--EEecCCchhhhcceEEecCCH--
Confidence 334456789996 89999999999999999999999999 887 788732 1111 112346799999964
Q ss_pred CCCCCHHHHH-HhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 047682 207 IGEMTVRETL-AFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMV 285 (1425)
Q Consensus 207 ~~~lTV~E~l-~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 285 (1425)
+||+ .+..... + .+. . .. + ...++.+++. |
T Consensus 76 ------~enl~~~~~~~~------~---~~~---~----~~--~---------------~~~~~~~l~~-g--------- 106 (208)
T 3b85_A 76 ------NEKIDPYLRPLH------D---ALR---D----MV--E---------------PEVIPKLMEA-G--------- 106 (208)
T ss_dssp ----------CTTTHHHH------H---HHT---T----TS--C---------------TTHHHHHHHT-T---------
T ss_pred ------HHHHHHHHHHHH------H---HHH---H----hc--c---------------HHHHHHHHHh-C---------
Confidence 6666 4421100 0 000 0 00 0 0123334432 2
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
+ ||||||+|||||+.+|++|||||||+| ++..+.+.|+++ + . +++|+ ++|+..++ +++.
T Consensus 107 -------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~-g~tii-vtHd~~~~----~~~~ 165 (208)
T 3b85_A 107 -------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-F-GSKMV-VTGDITQV----DLPG 165 (208)
T ss_dssp -------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-T-TCEEE-EEEC------------
T ss_pred -------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-C-CCEEE-EECCHHHH----hCcC
Confidence 2 999999999999999999999999999 888888888876 3 2 45556 67776544 4443
Q ss_pred EEcCC
Q 047682 366 LISEG 370 (1425)
Q Consensus 366 lL~~G 370 (1425)
..++|
T Consensus 166 ~~~~G 170 (208)
T 3b85_A 166 GQKSG 170 (208)
T ss_dssp ----C
T ss_pred CCCCc
Confidence 34455
No 121
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.83 E-value=2.9e-20 Score=221.26 Aligned_cols=84 Identities=27% Similarity=0.407 Sum_probs=72.2
Q ss_pred cccccCChhhhhhHHHHHHHh------cCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhc
Q 047682 288 EMLRGISGGQRKRVTTGEMLV------GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLF 361 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~------~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~ 361 (1425)
+.+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.+ .+.|+|+ ++|+... .+.+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~-itH~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVF-ITHDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEE-EESCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEE-EecchHH-HHhC
Confidence 456679999999999999999 79999999999999999999999999999854 3555544 6777765 7889
Q ss_pred CeEEEEcCCeEEE
Q 047682 362 DDIILISEGQIVF 374 (1425)
Q Consensus 362 D~vilL~~G~iv~ 374 (1425)
|+|++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999974
No 122
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.81 E-value=5.6e-23 Score=235.97 Aligned_cols=158 Identities=15% Similarity=0.198 Sum_probs=117.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
.++|+|+|+.|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHH
Confidence 35899999999999999999999999999999999998 5887 356788765554 5888
Q ss_pred H-HHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 214 E-TLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 214 E-~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
| |+.+.... .. .+...++.+ |++..| | ..
T Consensus 171 ~~ni~~~~~~-------------~~-----------------------------~~~~~i~~~-L~~gld---g----~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------------TH-----------------------------ACWRYFDTY-LRNALD---G----YP 200 (305)
T ss_dssp TCSCEEEEEE-------------CH-----------------------------HHHHHHHHT-TTGGGG---T----CC
T ss_pred HHhhccCccc-------------cH-----------------------------HHHHHHHHH-hHccCC---c----cC
Confidence 6 77663110 00 011233333 444444 2 36
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|||||||| |||++.+|+||| ||+||+.++..|.. + +|..+..+.+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l-------------tH~~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L-------------HSRVQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G-------------TTTEEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H-------------hCCHHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999877752 1 3334556789999 9999999
Q ss_pred EEecChhHHHHHHHhC
Q 047682 373 VFQGPREHVLEFFKSM 388 (1425)
Q Consensus 373 v~~G~~~~~~~~F~~~ 388 (1425)
++.|+++++..+|..+
T Consensus 256 v~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 256 PFNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCCHHHHHHHHHHS
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999999996666543
No 123
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.81 E-value=2.8e-22 Score=239.67 Aligned_cols=172 Identities=11% Similarity=0.085 Sum_probs=132.6
Q ss_pred ceeeeceEEEEeCCe--------------------EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc
Q 047682 134 FTILKDVNGIVKPSR--------------------LTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP 193 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~--------------------~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~ 193 (1425)
..+|+|||+.+++|+ +++|+||||||||||+|+|+|+.+|+ +|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 458999999999999 99999999999999999999999998 999999997653
Q ss_pred cceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHH
Q 047682 194 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIK 273 (1425)
Q Consensus 194 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 273 (1425)
+ .+|++|++ .++.+|+.||+.++.. +..++..++
T Consensus 109 -~-~~~v~q~~-~~~~ltv~D~~g~~~~-------------------------------------------~~~~~~~L~ 142 (413)
T 1tq4_A 109 -M-ERHPYKHP-NIPNVVFWDLPGIGST-------------------------------------------NFPPDTYLE 142 (413)
T ss_dssp -C-CCEEEECS-SCTTEEEEECCCGGGS-------------------------------------------SCCHHHHHH
T ss_pred -e-eEEecccc-ccCCeeehHhhcccch-------------------------------------------HHHHHHHHH
Confidence 1 27899974 5778899888755310 001355777
Q ss_pred HhCCcccccccccCcccccCChh--hhhhHHHHHHHhc----------CCcEeEEecCCCCCChHHHHHHHHHHHHHHH-
Q 047682 274 VLGLDVCADTMVGDEMLRGISGG--QRKRVTTGEMLVG----------PALALFMDEISTGLDSSTTFQIVTSLRQIIH- 340 (1425)
Q Consensus 274 ~lgL~~~~~t~vg~~~~~~LSGG--qrqRvsia~al~~----------~p~illLDEptsgLD~~t~~~i~~~L~~~~~- 340 (1425)
.++|.+.. .. .. |||| ||||+.||++|.. +|++++|||||+|||+.++.++.+.++++..
T Consensus 143 ~~~L~~~~-~~-----~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYD-FF-----II-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCS-EE-----EE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccC-Ce-----EE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 88886542 21 22 9999 9999999999999 9999999999999999999999999998852
Q ss_pred ---hcC---CEEEEEEecChhh--HHhhcCeEE
Q 047682 341 ---ILN---GTAVISLLQPAPE--TYDLFDDII 365 (1425)
Q Consensus 341 ---~~~---~t~ii~~~q~~~~--~~~~~D~vi 365 (1425)
..+ .++++...|...+ +.+++|+|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 221 3445444555554 667777663
No 124
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.81 E-value=2.7e-20 Score=218.35 Aligned_cols=88 Identities=16% Similarity=0.221 Sum_probs=69.2
Q ss_pred ccccCChhhhhhHHHHHHHh----cCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 289 MLRGISGGQRKRVTTGEMLV----GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 289 ~~~~LSGGqrqRvsia~al~----~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
.+..||||||||++||++|+ .+|++++|||||++||+.....+.+.++++. .+.++|+ ++|. .++.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~-~tH~-~~~~~~~d~~ 291 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIV-ITHN-KIVMEAADLL 291 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEE-ECCC-TTGGGGCSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEE-EECC-HHHHhhCceE
Confidence 34579999999999999997 6899999999999999999999999999873 2445444 5666 5788999987
Q ss_pred --EEEcCCeE-EEecChhH
Q 047682 365 --ILISEGQI-VFQGPREH 380 (1425)
Q Consensus 365 --ilL~~G~i-v~~G~~~~ 380 (1425)
++|.+|+. +.....++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 88888855 34444443
No 125
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.80 E-value=9e-23 Score=243.86 Aligned_cols=170 Identities=15% Similarity=0.170 Sum_probs=132.7
Q ss_pred eeeeeceeEEEeCCe--------------------EEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCccccc
Q 047682 852 LVLLNGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFA 911 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge--------------------~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~ 911 (1425)
+.+|++||+++++|+ ++||+||||||||||+|+|+|...+ .+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc-----
Confidence 458999999999999 9999999999999999999997653 3577888876532
Q ss_pred ceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH--HHHHHHH
Q 047682 912 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTI 989 (1425)
Q Consensus 912 ~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG--qrqRl~i 989 (1425)
+ .+|++|++ .++.+|+.|++.+.. + +..++++++.+++.+..... .+|+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 27899985 567889988875431 0 12367889999987653322 28999 9999999
Q ss_pred HHHHhh----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hC----CCEEEEEecCccH-HHHHhcCEE
Q 047682 990 AVELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DT----GRTVVCTIHQPSI-DIFEAFDEL 1049 (1425)
Q Consensus 990 a~~L~~----------~p~illLDEPTsgLD~~~~~~i~~~l~~~~-----~~----g~tvi~~~H~~~~-~~~~~fD~v 1049 (1425)
|++|+. +|++++|||||+|||+.++..+++.|+++. +. ..+|++++|+.+. ++-+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999884 32 2678899998752 255556655
No 126
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.79 E-value=3e-23 Score=227.82 Aligned_cols=183 Identities=13% Similarity=0.056 Sum_probs=119.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
..+++| .++++||+++|+||||||||||+++|+|... .+.+.+.+.+.+... ..++.++|++|++..++.+|+.|
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhcC
Confidence 457778 6899999999999999999999999999653 223333333332211 22456899999988788888877
Q ss_pred HHHHHhhccC---CCCCCHHHHHHHHHHH------HHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEE
Q 047682 932 SLLYSAWLRL---PPDVDSETRRMFLEEI------MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1002 (1425)
Q Consensus 932 ~l~~~~~lr~---~~~~~~~~~~~~v~~~------l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illL 1002 (1425)
++........ ....+.++.++.+++. ++.+|+.+.++... ..|| +|+.+|++++|
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~L 147 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQDL 147 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHHH
Confidence 7642211110 0012333444445554 44555554444432 3466 88999999999
Q ss_pred eCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 1003 DEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 1003 DEPTsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
||||+|+ |+..+..+++.++++.+ .|.|||+++|+++ ++.+.+|++++|.+.|
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 9999998 78899999999999974 4899999999987 6888999999997654
No 127
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.79 E-value=1.9e-20 Score=199.87 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=99.3
Q ss_pred EEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPP 943 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~ 943 (1425)
.++|+||||||||||+++|+|... +.++|.+... ...++.+||++|+. ++.+++ + +.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-HhhcC--
Confidence 589999999999999999999653 2223322111 12345689999975 222332 1 11100
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHH-----HhhCCcEEEEeC--CCCCCCHHHHHH
Q 047682 944 DVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAI 1016 (1425)
Q Consensus 944 ~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~-----L~~~p~illLDE--PTsgLD~~~~~~ 1016 (1425)
.. .+..+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 65 --~~----------------~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 --TS----------------KKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp --CC----------------SSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred --Cc----------------ccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 00 0122222 34699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEec---CccHHHHHhcCEEEEEeCCcEEEEECC
Q 047682 1017 VMRTVRNTVDTGRTVVCTIH---QPSIDIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 1017 i~~~l~~~~~~g~tvi~~~H---~~~~~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
+.+.+++ .+.|+|+++| +.. .+...+|+ .+|+++...+
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 9988875 4777888886 543 46667787 3456555443
No 128
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.79 E-value=2.9e-20 Score=197.59 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=54.9
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChH----------------HHHHHHHHHHHHHHhcCCEEEEEEecChh
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSS----------------TTFQIVTSLRQIIHILNGTAVISLLQPAP 355 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~----------------t~~~i~~~L~~~~~~~~~t~ii~~~q~~~ 355 (1425)
..|||||||++||+++..+|++++|||||++||+. ...++.+.++++.+. |.|+| .++|+..
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi-~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYV-YILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEE-EEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEE-EEeCCHH
Confidence 36999999999999999999999999999999999 558888888888654 55544 4677776
Q ss_pred hHHh
Q 047682 356 ETYD 359 (1425)
Q Consensus 356 ~~~~ 359 (1425)
++.+
T Consensus 161 ~~~~ 164 (171)
T 4gp7_A 161 EVEE 164 (171)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 6643
No 129
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.78 E-value=1.8e-20 Score=200.11 Aligned_cols=149 Identities=13% Similarity=0.109 Sum_probs=100.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCCc
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 228 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 228 (1425)
.++|+||||||||||+++|+|.+.. .+.|... .+......++.++|++|+. |+.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 5799999999999999999999852 2233221 1111102246789999964 222222 10 00
Q ss_pred chhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHH--
Q 047682 229 YDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEM-- 306 (1425)
Q Consensus 229 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~a-- 306 (1425)
+... +..+ ++.+..||||||||++||++
T Consensus 63 -----------------------------------------------~~~~--~~~~-~~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 -----------------------------------------------FFTS--KKLV-GSYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp -----------------------------------------------TCCC--SSEE-TTEEECHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCCc--cccc-cccccCcCHHHHHHHHHHhhcc
Confidence 0000 0112 12344699999999999996
Q ss_pred ---HhcCCcEeEEec--CCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEe--cChhhHHhhcCeEEEEcCCeEEE
Q 047682 307 ---LVGPALALFMDE--ISTGLDSSTTFQIVTSLRQIIHILNGTAVISLL--QPAPETYDLFDDIILISEGQIVF 374 (1425)
Q Consensus 307 ---l~~~p~illLDE--ptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~--q~~~~~~~~~D~vilL~~G~iv~ 374 (1425)
++.+|++++||| ||++||+.....+.+.+++ .+.|+++++| |+.+.+..++|+ .+|++++
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999998888887765 3556777775 677888888998 5566665
No 130
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.74 E-value=1.1e-19 Score=209.93 Aligned_cols=174 Identities=16% Similarity=0.175 Sum_probs=127.2
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-------c--cceEEEEccCCC-C
Q 047682 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-------P--QRTAAYISQHDV-H 206 (1425)
Q Consensus 137 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~--~~~~~yv~Q~d~-~ 206 (1425)
++++|+.+++|++++|+||||||||||++.|+|.+.|+ +|+|.++|.+..... . ++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999999887 899999998765421 1 246999999987 8
Q ss_pred CCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 047682 207 IGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVG 286 (1425)
Q Consensus 207 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 286 (1425)
++.+||+|++.++... + ++ ..+++.+|+.+..+..+
T Consensus 167 ~~~~~v~e~l~~~~~~-~----~d--------------------------------------~~lldt~gl~~~~~~~~- 202 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-G----YD--------------------------------------VVLCDTSGRLHTNYSLM- 202 (302)
T ss_dssp CHHHHHHHHHHHHHHT-T----CS--------------------------------------EEEECCCCCSSCCHHHH-
T ss_pred CHHHHHHHHHHHHHHc-C----Cc--------------------------------------chHHhcCCCCcchhHHH-
Confidence 8899999999885321 1 00 00223456655444443
Q ss_pred CcccccCChhhhhhHHHHHHHhcCCc--EeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecC---------hh
Q 047682 287 DEMLRGISGGQRKRVTTGEMLVGPAL--ALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQP---------AP 355 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia~al~~~p~--illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~---------~~ 355 (1425)
..|| |||++||++++.+|+ +|+|| ||+|||+... ++++.+..+.|.++ ++|. ..
T Consensus 203 ----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~ii-iThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 203 ----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLI-LTKLDGSARGGCVVS 267 (302)
T ss_dssp ----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEE-EECCSSCSCTHHHHH
T ss_pred ----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEE-EeCCCCCCccChhee
Confidence 4599 999999999999999 99999 9999998754 24444344556555 4552 12
Q ss_pred hHHhhcCeEEEEcCCeE
Q 047682 356 ETYDLFDDIILISEGQI 372 (1425)
Q Consensus 356 ~~~~~~D~vilL~~G~i 372 (1425)
......+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 33345667888888864
No 131
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.74 E-value=7.1e-20 Score=208.46 Aligned_cols=144 Identities=12% Similarity=0.148 Sum_probs=88.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCCc
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 228 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 228 (1425)
.++|+||||||||||+|+|+|...|+ +|+|.++|+++.....++.++|++|++.+++.+||.||+.|+.......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~-- 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN-- 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH--
Confidence 47999999999999999999999998 9999999998765545578999999999999999999999875322100
Q ss_pred chhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHh
Q 047682 229 YDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLV 308 (1425)
Q Consensus 229 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~ 308 (1425)
..+.+.+ .++ ....+... ..||||||||+++||+++
T Consensus 79 --------------------~~~~i~~---------------~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 79 --------------------CWEPIEK---------------YIN----EQYEKFLK-----EEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp --------------------CSHHHHH---------------HHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCE
T ss_pred --------------------HHHHHHH---------------HHH----HHHHhhhH-----HhcCcccchhhhhheeee
Confidence 0000000 000 11112222 359999999999999987
Q ss_pred cCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEE
Q 047682 309 GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISL 350 (1425)
Q Consensus 309 ~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~ 350 (1425)
. +++||||+.|||+.. .+.++.+.+. .++|+++
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~Vi 147 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIPVI 147 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEEEE
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEEEE
Confidence 5 999999999999987 4445555432 5555544
No 132
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.73 E-value=7.4e-18 Score=198.51 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=74.4
Q ss_pred Ccccc-cCChhhhhhHHHHHHHh---------cCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhh
Q 047682 287 DEMLR-GISGGQRKRVTTGEMLV---------GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPE 356 (1425)
Q Consensus 287 ~~~~~-~LSGGqrqRvsia~al~---------~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~ 356 (1425)
+..++ .+|||||||++||++|+ ++|+||+|||||++||+..+..+++.++++ . .++|+++|. ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~-qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----P-QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----S-EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----C-cEEEEEEec-cc
Confidence 44566 69999999999999999 899999999999999999999999988764 2 566666674 33
Q ss_pred HHhhcCeEEEEcCCeEEEecChhHH
Q 047682 357 TYDLFDDIILISEGQIVFQGPREHV 381 (1425)
Q Consensus 357 ~~~~~D~vilL~~G~iv~~G~~~~~ 381 (1425)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998765
No 133
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.73 E-value=3.5e-20 Score=211.05 Aligned_cols=147 Identities=13% Similarity=0.128 Sum_probs=96.5
Q ss_pred EEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVD 946 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~ 946 (1425)
.+||+||||||||||+|+|+|... +.+|+|.++|.+......++.+||++|++.+++.+||.|++.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 489999999999999999999654 3479999999877555556789999999999999999999988654321 111
Q ss_pred HHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 047682 947 SETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026 (1425)
Q Consensus 947 ~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1026 (1425)
.+ .+.+.++ .+..+.. ...||||||||+.|||+++. ++||||||+|||+.. .+.++.+.+
T Consensus 80 ~~----~i~~~~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 WE----PIEKYIN----EQYEKFL-----KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp SH----HHHHHHH----HHHHHHH-----HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HH----HHHHHHH----HHHHhhh-----HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 11 1233332 2333333 24699999999999999875 999999999999987 445556655
Q ss_pred CCCEEEEEecCc
Q 047682 1027 TGRTVVCTIHQP 1038 (1425)
Q Consensus 1027 ~g~tvi~~~H~~ 1038 (1425)
. .+||+++|.-
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999964
No 134
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.72 E-value=1.5e-19 Score=208.80 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=117.7
Q ss_pred eeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc-------cc--cceEEEeecCCC-CC
Q 047682 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE-------TF--ARISGYCEQNDI-HS 924 (1425)
Q Consensus 855 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~-~~ 924 (1425)
++++|+.+++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. .+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 3578899999999999999999999999999996432 258899999775321 12 235899999988 88
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCc--EEEE
Q 047682 925 PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFM 1002 (1425)
Q Consensus 925 ~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~--illL 1002 (1425)
|.+|++|++.++.. + ..+ ..+++.+|+.+..+..+ .+|| |||++||++|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~---~~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-E---GYD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-T---TCS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-c---CCc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 99999999987542 1 111 13456677776665553 4689 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 047682 1003 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1037 (1425)
Q Consensus 1003 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1037 (1425)
| ||+|||+.+.. +++. +.|.|+|++||.
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCC
Confidence 9 99999987542 4444 348999999994
No 135
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.72 E-value=5.7e-21 Score=211.25 Aligned_cols=173 Identities=13% Similarity=0.102 Sum_probs=106.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc----cceEEEEccCCCCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP----QRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 210 (1425)
.-|+|||+++++|++++|+||||||||||+++|+|.+ | |+|.+ |.+.....+ ++.++|++|++..++.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 4699999999999999999999999999999999987 4 78888 776543222 35689999976554433
Q ss_pred CH-HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 211 TV-RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 211 TV-~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+. .+++.+. ... ...|... ...++++++...+ ..+.
T Consensus 84 ~~~~~~l~~~-~~~--~~~~g~~--------------------------------~~~i~~~l~~~~~-----~il~--- 120 (218)
T 1z6g_A 84 LKNEDFLEYD-NYA--NNFYGTL--------------------------------KSEYDKAKEQNKI-----CLFE--- 120 (218)
T ss_dssp HHTTCEEEEE-EET--TEEEEEE--------------------------------HHHHHHHHHTTCE-----EEEE---
T ss_pred hhccchhhhh-hcc--cccCCCc--------------------------------HHHHHHHHhCCCc-----EEEE---
Confidence 21 1111110 000 0000000 0112333333221 1221
Q ss_pred cccCChhhhhhHHH-----HHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 290 LRGISGGQRKRVTT-----GEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 290 ~~~LSGGqrqRvsi-----a~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.+.+.... .+ +.| ...||.|
T Consensus 121 -~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~--~~----~~h-----~~~~d~i 188 (218)
T 1z6g_A 121 -MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE--LH----EAN-----LLNFNLS 188 (218)
T ss_dssp -ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--HH----HHT-----TSCCSEE
T ss_pred -ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HH----hhc-----ccCCCEE
Confidence 3599999999999 89999999999999999999999999999998876543 22 122 2457777
Q ss_pred EEEcC
Q 047682 365 ILISE 369 (1425)
Q Consensus 365 ilL~~ 369 (1425)
+++++
T Consensus 189 iv~~~ 193 (218)
T 1z6g_A 189 IINDD 193 (218)
T ss_dssp EECSS
T ss_pred EECCC
Confidence 76654
No 136
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.71 E-value=2.7e-21 Score=221.93 Aligned_cols=169 Identities=12% Similarity=0.132 Sum_probs=122.6
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
++++|+++.++ ..+|+|+|+.|++|++++|+||||||||||+++|+|.. +|+|
T Consensus 102 i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I-------- 154 (305)
T 2v9p_A 102 FNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV-------- 154 (305)
T ss_dssp HHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE--------
T ss_pred EEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE--------
Confidence 56677776552 24899999999999999999999999999999999975 3455
Q ss_pred cccccceEEEeecCCCCCCCCCHHH-HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 907 QETFARISGYCEQNDIHSPNVTVYE-SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 907 ~~~~~~~~gyv~Q~~~~~~~lTv~E-~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
++|++|++.++. .|++| |+.|.. +.+. .+.+.++.+ |.+..| ...|||||||
T Consensus 155 -------~~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQ 207 (305)
T 2v9p_A 155 -------LSFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKH 207 (305)
T ss_dssp -------ECGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSS
T ss_pred -------EEEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHH
Confidence 346777776665 36776 665421 1111 234455553 333223 2469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 986 Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
| ||+|+++|+||+ ||+||+.++..++. .+|+++ ..+.+|+| +|++ |++++.|+.
T Consensus 208 R---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~- 261 (305)
T 2v9p_A 208 K---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITD- 261 (305)
T ss_dssp C---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH-
T ss_pred H---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCH-
Confidence 9 999999999999 99999999988762 189886 45789999 9986 688888876
Q ss_pred CCchhHHHHHhhC
Q 047682 1066 RHSSHLISYFEAI 1078 (1425)
Q Consensus 1066 ~~~~~~~~yf~~~ 1078 (1425)
.++..+|..+
T Consensus 262 ---~el~~~y~~l 271 (305)
T 2v9p_A 262 ---ADWKSFFVRL 271 (305)
T ss_dssp ---HHHHHHHHHS
T ss_pred ---HHHHHHHHHH
Confidence 3455666654
No 137
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.71 E-value=5e-17 Score=191.94 Aligned_cols=76 Identities=22% Similarity=0.339 Sum_probs=69.1
Q ss_pred CCcCCHHHHH------HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEE
Q 047682 976 VSGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1049 (1425)
Q Consensus 976 ~~~lSgGqrq------Rl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v 1049 (1425)
+..||||||| |+++|++|+.+|++|+|||||+|||+.++..+.+.|+++.+.|.|||+++|++ ++.+.+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEE
Confidence 4679999999 67778888889999999999999999999999999999887789999999996 467899999
Q ss_pred EEEe
Q 047682 1050 FLMK 1053 (1425)
Q Consensus 1050 ~~l~ 1053 (1425)
+.|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
No 138
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.71 E-value=9.1e-19 Score=205.77 Aligned_cols=173 Identities=16% Similarity=0.196 Sum_probs=127.7
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---------ccceEEEEccCCC-CC
Q 047682 138 KDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---------PQRTAAYISQHDV-HI 207 (1425)
Q Consensus 138 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~~~~~~yv~Q~d~-~~ 207 (1425)
+++|+.+++|++++|+||||||||||++.|+|.+.++ +|+|.++|.+..... .++.++|++|++. ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688899999999999999999999999999999887 899999998865421 1246999999887 88
Q ss_pred CCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 047682 208 GEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD 287 (1425)
Q Consensus 208 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 287 (1425)
+.+||+|++.++... + ++. .+++.+|+.+..+..+
T Consensus 225 p~~tv~e~l~~~~~~-~----~d~--------------------------------------~lldt~Gl~~~~~~~~-- 259 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-G----YDV--------------------------------------VLCDTSGRLHTNYSLM-- 259 (359)
T ss_dssp HHHHHHHHHHHHHHT-T----CSE--------------------------------------EEEECCCCSSCCHHHH--
T ss_pred hhhhHHHHHHHHHhC-C----CHH--------------------------------------HHHHhcCCChhhhhHH--
Confidence 899999999986321 0 000 0223355655444333
Q ss_pred cccccCChhhhhhHHHHHHHhcCCc--EeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecC---------hhh
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPAL--ALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQP---------APE 356 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~--illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~---------~~~ 356 (1425)
..|| |||++||++++.+|+ +|+|| ||+|||+.+.. +++.+..+.|.|+ ++|. ...
T Consensus 260 ---~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~gG~~lsi 325 (359)
T 2og2_A 260 ---EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVSV 325 (359)
T ss_dssp ---HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EESCTTCSCTHHHHHH
T ss_pred ---HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE-EecCcccccccHHHHH
Confidence 4599 999999999999999 99999 99999987642 3444344556655 4552 223
Q ss_pred HHhhcCeEEEEcCCeE
Q 047682 357 TYDLFDDIILISEGQI 372 (1425)
Q Consensus 357 ~~~~~D~vilL~~G~i 372 (1425)
.....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 3345677888888864
No 139
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.71 E-value=1.4e-20 Score=206.64 Aligned_cols=184 Identities=12% Similarity=0.077 Sum_probs=111.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
.++++| ..+++|++++|+||||||||||+++|+|.++. +.+.+.+.+.+... ..++.++|++|++..++.+|++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 457888 68999999999999999999999999999852 23332233322211 1235689999987777788887
Q ss_pred HHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHH------HHHhCCcccccccccC
Q 047682 214 ETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYV------IKVLGLDVCADTMVGD 287 (1425)
Q Consensus 214 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~~t~vg~ 287 (1425)
|++.+.....+....|.. .+. +...++++. ++.+|+...++...
T Consensus 83 ~~l~~~~~~~~n~~~~g~----~~~------------------------~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-- 132 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGT----LAQ------------------------PVRAAAATGVPVLIEVDLAGARAIKKTMP-- 132 (207)
T ss_dssp TCEEEEEEEGGGTEEEEE----EHH------------------------HHHHHHHHTCCEEEECCHHHHHHHHHHCT--
T ss_pred CCceeehhhcCchhhcCC----cHH------------------------HHHHHHHcCCeEEEEeCHHHHHHHHHhcC--
Confidence 776432211100000000 000 001111111 22333333333322
Q ss_pred cccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCC----ChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 288 EMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGL----DSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 288 ~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgL----D~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
+.|| +|+.+|++++|||||+|+ |+..+.++.+.++++.+..+.|+ +.++|+.+++.++||+
T Consensus 133 ---~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tv-i~vtHdl~~~~~~~d~ 197 (207)
T 1znw_A 133 ---EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDK-VVVNRRLESACAELVS 197 (207)
T ss_dssp ---TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSE-EEECSSHHHHHHHHHH
T ss_pred ---CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcE-EEECCCHHHHHHHHHH
Confidence 3466 899999999999999998 67789999999999875444454 4578999999999999
Q ss_pred EEEEc
Q 047682 364 IILIS 368 (1425)
Q Consensus 364 vilL~ 368 (1425)
|++|.
T Consensus 198 i~~l~ 202 (207)
T 1znw_A 198 LLVGT 202 (207)
T ss_dssp HHC--
T ss_pred HHHhc
Confidence 99984
No 140
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.71 E-value=1.6e-21 Score=215.66 Aligned_cols=176 Identities=9% Similarity=-0.025 Sum_probs=108.3
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc----ccccceEEEeecCCCCCCCCC
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ----ETFARISGYCEQNDIHSPNVT 928 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~~lT 928 (1425)
.-|+|||+++++|++++|+||||||||||+++|+|..+ |+|.+ |.+... ...++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 46899999999999999999999999999999999652 56666 554321 123456799999876554433
Q ss_pred HH-HHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHH-----HHHHhhCCcEEE
Q 047682 929 VY-ESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI-----AVELVANPSIIF 1001 (1425)
Q Consensus 929 v~-E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~i-----a~~L~~~p~ill 1001 (1425)
.. +++. ...++.+ ...+ ++.++++++...+. ..+ ..+|||||||++| +++++.+|++++
T Consensus 85 ~~~~~l~-~~~~~~~~~g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 85 KNEDFLE-YDNYANNFYGTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HTTCEEE-EEEETTEEEEEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hccchhh-hhhcccccCCCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 11 1111 0011110 0111 12356666654322 111 2589999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-------CCCEEEEEecCccHHHHHhcCEE
Q 047682 1002 MDEPTSGLDARAAAIVMRTVRNTVD-------TGRTVVCTIHQPSIDIFEAFDEL 1049 (1425)
Q Consensus 1002 LDEPTsgLD~~~~~~i~~~l~~~~~-------~g~tvi~~~H~~~~~~~~~fD~v 1049 (1425)
|||||+++|..+...+.+.+++..+ .+.+.|+++|++. +.++..|++
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~i 204 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNY 204 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHH
Confidence 9999999999999999988877643 2345555555543 344444444
No 141
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.71 E-value=7.8e-19 Score=205.78 Aligned_cols=131 Identities=18% Similarity=0.133 Sum_probs=103.8
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHH
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-ETFARISGYCEQNDIHSPNVTVYES 932 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~ 932 (1425)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|.+... ...++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 78999999999999999999999999999999997653 36899998864211 01122233321
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 047682 933 LLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012 (1425)
Q Consensus 933 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~ 1012 (1425)
+ |||+||++||++|..+|++|+|||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 1013 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 1013 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
..+++.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|+
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2356677776543458999999987 567899999998763
No 142
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.70 E-value=1.9e-19 Score=218.05 Aligned_cols=180 Identities=15% Similarity=0.101 Sum_probs=139.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCc---cCCCC--------CccceEEEEc
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGH---NMDEF--------VPQRTAAYIS 201 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~---~~~~~--------~~~~~~~yv~ 201 (1425)
...+|+++ +.+.+|+.++|+|||||||||||++|+|..+++ +|.|.++|+ ++.++ ..++.++|++
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~ 219 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAA 219 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEE
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEE
Confidence 35699999 999999999999999999999999999999998 999999998 45432 1346799999
Q ss_pred cC-CCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccc
Q 047682 202 QH-DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVC 280 (1425)
Q Consensus 202 Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 280 (1425)
|+ +..++.+||.+|+.+.++.... +. .+. ...
T Consensus 220 q~~~~~~~~~~v~~~~~~~ae~~~~--------------~~------~~v---------------------------~~~ 252 (438)
T 2dpy_A 220 PADVSPLLRMQGAAYATRIAEDFRD--------------RG------QHV---------------------------LLI 252 (438)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHT--------------TT------CEE---------------------------EEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh--------------CC------CCH---------------------------HHH
Confidence 95 5667788999999886543110 00 000 000
Q ss_pred ccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHh--cCCE-----EEEEEecC
Q 047682 281 ADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHI--LNGT-----AVISLLQP 353 (1425)
Q Consensus 281 ~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~--~~~t-----~ii~~~q~ 353 (1425)
.| .+..+|||| |||+|| +++|++ |+|||+.+...+.+.++++.+. .++. +|+..+|+
T Consensus 253 ld------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHd 316 (438)
T 2dpy_A 253 MD------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD 316 (438)
T ss_dssp EE------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSC
T ss_pred HH------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCC
Confidence 01 123599999 999999 888887 9999999999999999887541 1242 55556677
Q ss_pred hhhHHhhcCeEEEEcCCeEEEecChhHH
Q 047682 354 APETYDLFDDIILISEGQIVFQGPREHV 381 (1425)
Q Consensus 354 ~~~~~~~~D~vilL~~G~iv~~G~~~~~ 381 (1425)
.. ...+|++++|.+|+++..|+++++
T Consensus 317 l~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 317 QQ--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp SC--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred cc--chhhceEEEEeCcEEEEeCCHHHc
Confidence 65 678999999999999999988765
No 143
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.69 E-value=8.4e-19 Score=206.09 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=118.6
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc-------cc--cceEEEeecCCC-CCC
Q 047682 856 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE-------TF--ARISGYCEQNDI-HSP 925 (1425)
Q Consensus 856 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~-~~~ 925 (1425)
+++|+.+++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 457888999999999999999999999999996432 258899999875321 12 245899999988 889
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCc--EEEEe
Q 047682 926 NVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMD 1003 (1425)
Q Consensus 926 ~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~--illLD 1003 (1425)
..|++|++.++.. + ..+ ..+++.+|+.+..+..+ .+|| |||++||++|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~-~---~~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKE-E---GYD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHH-T---TCS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHh-C---CCH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 9999999987642 1 111 13456677776655543 4689 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q 047682 1004 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQ 1037 (1425)
Q Consensus 1004 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~ 1037 (1425)
||+|||+.+.. +++.+ .|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999987653 34443 48999999994
No 144
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.68 E-value=5.4e-17 Score=191.14 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=72.1
Q ss_pred CC-cCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh
Q 047682 976 VS-GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1045 (1425)
Q Consensus 976 ~~-~lSgGqrqRl~ia~~L~---------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~ 1045 (1425)
++ .+|||||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|+++|. + + .
T Consensus 262 ~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~ 333 (359)
T 2o5v_A 262 ASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---G 333 (359)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---T
T ss_pred hhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---c
Confidence 34 69999999999999999 8999999999999999999999999998863 799999994 3 2 7
Q ss_pred cCEEEEEeCCcEEEEECCCC
Q 047682 1046 FDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1046 fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
+|++++|++ |+++..|++.
T Consensus 334 ~~~i~~l~~-G~i~~~g~~~ 352 (359)
T 2o5v_A 334 AALTLRAQA-GRFTPVADEE 352 (359)
T ss_dssp CSEEEEEET-TEEEECCCTT
T ss_pred CCEEEEEEC-CEEEecCCHH
Confidence 899999996 6888888864
No 145
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.67 E-value=3.7e-18 Score=198.16 Aligned_cols=128 Identities=10% Similarity=-0.004 Sum_probs=96.5
Q ss_pred ceEE-EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHH
Q 047682 139 DVNG-IVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLA 217 (1425)
Q Consensus 139 ~vs~-~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 217 (1425)
|+|. .+++|++++|+||||||||||+++|+|.++|. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 3444 37899999999999999999999999999875 442 368999999888888 9999986
Q ss_pred hhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 047682 218 FSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQ 297 (1425)
Q Consensus 218 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 297 (1425)
+... .+... ..........++.++ ....+..+ ..+||||
T Consensus 143 ~~~~-~g~~~----------------------------------~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPE----------------------------------SYNRRALMRFVTSVK-SGSDYACA-----PVYSHLH 181 (312)
T ss_dssp CTTC-TTSGG----------------------------------GBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTT
T ss_pred HHHh-cCCCh----------------------------------HHHHHHHHHHHHHhC-CCcccCCc-----ccCChhh
Confidence 5211 11100 000123445677776 43333443 4599999
Q ss_pred hhhHHHHHHHhcCCcEeEEecCCCCCCh
Q 047682 298 RKRVTTGEMLVGPALALFMDEISTGLDS 325 (1425)
Q Consensus 298 rqRvsia~al~~~p~illLDEptsgLD~ 325 (1425)
|||+++|++++.+|+|+|||||+..+|.
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999996
No 146
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.67 E-value=6.1e-18 Score=198.17 Aligned_cols=132 Identities=11% Similarity=0.155 Sum_probs=100.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRET 215 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 215 (1425)
+++++|+.+++|++++|+||||||||||+++|+|.++|+ +|.|+++|.+ +.. .+.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~--------------~~~------ 214 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIV--------------FKH------ 214 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCC--------------CSS------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--ccc--------------ccc------
Confidence 799999999999999999999999999999999999998 9999999853 110 000
Q ss_pred HHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 047682 216 LAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISG 295 (1425)
Q Consensus 216 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSG 295 (1425)
.+ .. . ..+ .+ |
T Consensus 215 ----~~-----~~----------------------------------------------i-------~~~-----~g--g 225 (330)
T 2pt7_A 215 ----HK-----NY----------------------------------------------T-------QLF-----FG--G 225 (330)
T ss_dssp ----CS-----SE----------------------------------------------E-------EEE-----CB--T
T ss_pred ----ch-----hE----------------------------------------------E-------EEE-----eC--C
Confidence 00 00 0 000 01 8
Q ss_pred hhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCC-EEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 296 GQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNG-TAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 296 GqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~-t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
||+||++||+||..+|++++|||||+. ++.+.|+.+. .++ |++++ +|... +.+.+||+++|.+|+.
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~--~g~~tvi~t-~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC--SGHKGTLTT-LHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH--TTCCCEEEE-EECSS-HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh--cCCCEEEEE-EcccH-HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 3456676664 244 45554 44443 8889999999988853
No 147
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.66 E-value=9.9e-18 Score=194.39 Aligned_cols=183 Identities=15% Similarity=0.151 Sum_probs=114.4
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEE-EEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
.+|+++++.+++|++++|+||||||||||++.|+|..... .| .|.+.+.+.......+.+.++.+... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 4799999999999999999999999999999999953211 23 44333322222222222222222221 12223
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHH-HHHHHHHHHHhhCCcEEEEeCCCC---
Q 047682 932 SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS--- 1007 (1425)
Q Consensus 932 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq-rqRl~ia~~L~~~p~illLDEPTs--- 1007 (1425)
++.... .+.++.++.++++++..++. +.+. ...+|.+| +||+. |+++..+|++|++||||+
T Consensus 97 ~l~~~~-------~~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-------IENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-------HHHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-------CCHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 333211 11122233344444322221 1111 13588998 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCcc-H--------------------HHHHhcCEEEEEeCCc
Q 047682 1008 G---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQPS-I--------------------DIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 1008 g---LD~-~~~~~i~~~l~~~~~~-g~tvi~~~H~~~-~--------------------~~~~~fD~v~~l~~Gg 1056 (1425)
+ +|. .....+++.|++++++ |+|||+++|+.. . .+...+|+|++|.+|.
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCc
Confidence 5 555 6678899999999765 999999999962 1 4667899999999753
No 148
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.66 E-value=8e-16 Score=181.59 Aligned_cols=81 Identities=26% Similarity=0.354 Sum_probs=67.2
Q ss_pred cccccCChhhhh------hHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhc
Q 047682 288 EMLRGISGGQRK------RVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLF 361 (1425)
Q Consensus 288 ~~~~~LSGGqrq------Rvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~ 361 (1425)
..+..||||||| |+++|++++.+|++|+|||||+|||+..+..+.+.|+++... +.++++ ++|+ +++.+.|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~-~sH~-~~~~~~~ 320 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVIL-VSHD-EELKDAA 320 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEE-EESC-GGGGGGC
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEE-EECh-HHHHHhC
Confidence 345679999999 677888999999999999999999999999999999987543 455555 5666 5788999
Q ss_pred CeEEEEc--CCe
Q 047682 362 DDIILIS--EGQ 371 (1425)
Q Consensus 362 D~vilL~--~G~ 371 (1425)
|++++|+ +|.
T Consensus 321 d~~~~l~~~~g~ 332 (339)
T 3qkt_A 321 DHVIRISLENGS 332 (339)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEecCCc
Confidence 9999985 454
No 149
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.66 E-value=9.4e-19 Score=211.97 Aligned_cols=174 Identities=16% Similarity=0.095 Sum_probs=135.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCc---cCCc--------ccccceEEEeecC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGY---PKKQ--------ETFARISGYCEQN 920 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~---~~~~--------~~~~~~~gyv~Q~ 920 (1425)
..+|+++ +.+.+||+++|+|||||||||||++|+|.... ..|.|.++|. +... ...++.++|++|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 4689999 99999999999999999999999999997653 3799999997 3321 2346779999995
Q ss_pred -CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcE
Q 047682 921 -DIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 999 (1425)
Q Consensus 921 -~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~i 999 (1425)
+..++.+|+.+++.+.+....... .++ ....|. ...+|+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~~----------~~v------~~~ld~------l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDRG----------QHV------LLIMDS------LTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTT----------CEE------EEEEEC------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCC----------CCH------HHHHHh------HHHHHHHH-HHHHHH---hCCCcc
Confidence 555678899999987653210000 000 011122 34699999 999999 888988
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1000 IFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1000 llLDEPTsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|+|||+.+...+.+.++++.+ . |. ||++++||.+ ...+|++++|.+ |+++..|+.
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 999999999999999998865 3 64 9999999987 357899999986 788887754
No 150
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.63 E-value=3.7e-16 Score=194.91 Aligned_cols=78 Identities=17% Similarity=0.258 Sum_probs=66.6
Q ss_pred ccccC-ChhhhhhHHHHHHHhcCC--cEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 289 MLRGI-SGGQRKRVTTGEMLVGPA--LALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 289 ~~~~L-SGGqrqRvsia~al~~~p--~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
.+..| ||||||||+||++|+.+| ++|+|||||+|||..++..|.+.|+++++ +.++|+ ++|.. ++...||+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~-itH~~-~~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLV-VTHLA-QIAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEE-ECCCH-HHHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEE-EecCH-HHHHhCCEEE
Confidence 34567 999999999999999999 99999999999999999999999999875 455544 66665 4667899999
Q ss_pred EEcCC
Q 047682 366 LISEG 370 (1425)
Q Consensus 366 lL~~G 370 (1425)
+|++|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99654
No 151
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.63 E-value=4.4e-17 Score=188.89 Aligned_cols=185 Identities=13% Similarity=0.051 Sum_probs=111.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc-EEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSG-RVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 212 (1425)
.++|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.+.+.+.......+++.++.|+.. +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 45899999999999999999999999999999999998775 56 55443322110000011111111100 011
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
.+++..+ .....+....++.+++..++. +.+ ....
T Consensus 95 ~~~l~~~--------------------------------------~~~~~~~~~~~~~~l~~~~l~------i~~-~~~~ 129 (296)
T 1cr0_A 95 SDSLKRE--------------------------------------IIENGKFDQWFDELFGNDTFH------LYD-SFAE 129 (296)
T ss_dssp CHHHHHH--------------------------------------HHHHTHHHHHHHHHHSSSCEE------EEC-CCCS
T ss_pred ccccccC--------------------------------------CCCHHHHHHHHHHHhccCCEE------EEC-CCCC
Confidence 1111110 000011122233333322221 111 1134
Q ss_pred CChhh-hhhHHHHHHHhcCCcEeEEecCCC---C---CCh-HHHHHHHHHHHHHHHhcCCEEEEEEecCh--h-------
Q 047682 293 ISGGQ-RKRVTTGEMLVGPALALFMDEIST---G---LDS-STTFQIVTSLRQIIHILNGTAVISLLQPA--P------- 355 (1425)
Q Consensus 293 LSGGq-rqRvsia~al~~~p~illLDEpts---g---LD~-~t~~~i~~~L~~~~~~~~~t~ii~~~q~~--~------- 355 (1425)
+|.+| +||+. |+++..+|+++++||||+ + +|. .....+.+.|+++++..+.++|+ ++|.. .
T Consensus 130 ~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~-vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 130 AETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV-ICHLKNPDKGKAHEE 207 (296)
T ss_dssp CCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEE-EEECC----------
T ss_pred CCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EEecCcccccccccc
Confidence 88888 66776 999999999999999999 5 455 66688999999998776666666 45553 3
Q ss_pred -------------hHHhhcCeEEEEcCCeE
Q 047682 356 -------------ETYDLFDDIILISEGQI 372 (1425)
Q Consensus 356 -------------~~~~~~D~vilL~~G~i 372 (1425)
.+.+.||+|++|++|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
No 152
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.63 E-value=6.6e-16 Score=158.91 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=69.9
Q ss_pred CCcCCHHHHHHHHHH------HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEE
Q 047682 976 VSGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1049 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia------~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v 1049 (1425)
+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.+.|+|||+++|++ ++.+.+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 467999999999886 899999999999999999999999999999999877799999999997 356889999
Q ss_pred EEEe
Q 047682 1050 FLMK 1053 (1425)
Q Consensus 1050 ~~l~ 1053 (1425)
++|+
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
No 153
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.62 E-value=1.1e-16 Score=180.20 Aligned_cols=179 Identities=15% Similarity=0.096 Sum_probs=102.2
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 211 (1425)
+++++|+|+|+++++|++++|+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 3456999999999999999999999999999999999975 222233 1346799999974 777899
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
+.|++.+.......... + ..+. ......++.+ .+..+..+ .
T Consensus 75 ~~~~~~~~~~~~~~~~~----------~-------~~~~---------------~~~~~~L~~l--~~~~~~~~-----~ 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHP----------D-------AFDN---------------DLMHRTLKNI--VEGKTVEV-----P 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSG----------G-------GBCH---------------HHHHHHHHHH--HTTCCEEE-----C
T ss_pred HhHhhhhhccCCCCCCc----------c-------cccH---------------HHHHHHHHHH--HCCCCeec-----c
Confidence 99998775332111000 0 0000 0112223322 23333333 4
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHh-hcCeEEEEcCC
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYD-LFDDIILISEG 370 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~-~~D~vilL~~G 370 (1425)
.+|+||+||+.+ ++++.+|++++||||....|.. +.++ .+ .+|+..+|+...+.+ +++++ ++|
T Consensus 116 ~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~-~~i~v~th~~~~~~r~~~r~~---~~G 179 (245)
T 2jeo_A 116 TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FH-LRLFVDTDSDVRLSRRVLRDV---RRG 179 (245)
T ss_dssp CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CS-EEEEEECCHHHHHHHHHHHHT---C--
T ss_pred cccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cC-eEEEEECCHHHHHHHHHHHHH---HcC
Confidence 699999999988 5888999999999988877753 1222 23 444444554444433 34444 556
Q ss_pred eEEEecChhHHHHHH
Q 047682 371 QIVFQGPREHVLEFF 385 (1425)
Q Consensus 371 ~iv~~G~~~~~~~~F 385 (1425)
+ +.+++.+.+
T Consensus 180 ~-----~~e~~~~~~ 189 (245)
T 2jeo_A 180 R-----DLEQILTQY 189 (245)
T ss_dssp ------CHHHHHHHH
T ss_pred C-----CHHHHHHHH
Confidence 4 566665433
No 154
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.61 E-value=9.5e-18 Score=194.69 Aligned_cols=158 Identities=11% Similarity=0.013 Sum_probs=108.5
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccC
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRL 941 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~ 941 (1425)
+++|+++||+||||||||||+++|+|...+. +|. +.++|++|++.+++. |++|++.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~--- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR--- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh---
Confidence 8999999999999999999999999964321 121 347999999999888 99999854211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 047682 942 PPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021 (1425)
Q Consensus 942 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l 1021 (1425)
.+.......+.+.++++.++ .+..+.. +..|||||+||+++|++++.+|+||+||||++.+|+.. ..+
T Consensus 147 -~g~~~~~d~~~~~~~L~~l~-~~~~~~~-----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 147 -KGFPESYNRRALMRFVTSVK-SGSDYAC-----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp -TTSGGGBCHHHHHHHHHHHH-TTCSCEE-----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred -cCCChHHHHHHHHHHHHHhC-CCcccCC-----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 11222222344677788777 4443333 34699999999999999999999999999999998621 112
Q ss_pred HHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 1022 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 1022 ~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
+++. + .+|++.|+.+.......+|.+.+.+
T Consensus 215 ~~~~--D-~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 215 SDLF--D-FSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp GGGC--S-EEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred HHhc--C-cEEEEECCHHHHHHHHHHHHHHHHh
Confidence 2222 2 3455566554333334455554543
No 155
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.60 E-value=2.3e-17 Score=185.85 Aligned_cols=156 Identities=9% Similarity=-0.005 Sum_probs=98.3
Q ss_pred CceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 047682 850 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTV 929 (1425)
Q Consensus 850 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 929 (1425)
+++.+|+|+|+++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 3457999999999999999999999999999999999853 112222 2356689999986 6678999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 047682 930 YESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009 (1425)
Q Consensus 930 ~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgL 1009 (1425)
.|++.+........+ ......+.+.+.++.+ .+..+.. ...+|+||+||+.+ ++++.+|++++||||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876543211111 1111112233444433 2333333 34699999999988 5788899999999998888
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCc
Q 047682 1010 DARAAAIVMRTVRNTVDTGRTVVCTIHQP 1038 (1425)
Q Consensus 1010 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1038 (1425)
|.. ++++ .+.||++++|+.
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~~ 165 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDSD 165 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCHH
T ss_pred cHH--------HHHh--cCeEEEEECCHH
Confidence 763 2222 378999999974
No 156
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.59 E-value=1.6e-16 Score=209.72 Aligned_cols=157 Identities=18% Similarity=0.145 Sum_probs=112.7
Q ss_pred eeeeeceeEEEeC-------CeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCC
Q 047682 852 LVLLNGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHS 924 (1425)
Q Consensus 852 ~~iL~~vs~~i~~-------Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~ 924 (1425)
..+++|+++.+++ |++++|+|||||||||||+++ |.... .++..+||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------------~aqiG~~Vpq~~~-- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------------MAQMGCYVPAEVC-- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------------HHTTTCCEESSEE--
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------------HhheeEEeccCcC--
Confidence 4699999999987 999999999999999999999 85420 1122239999753
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 047682 925 PNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1004 (1425)
Q Consensus 925 ~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDE 1004 (1425)
.+||.|++. .+. |+.+.... +.+.+|+|+++ +++|++++++|++++|||
T Consensus 828 -~l~v~d~I~----~ri--------------------g~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 828 -RLTPIDRVF----TRL--------------------GASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVDE 876 (1022)
T ss_dssp -EECCCSBEE----EEC--------------------C--------------CHHHHHHHH-HHHHHHHCCTTCEEEEEC
T ss_pred -CCCHHHHHH----HHc--------------------CCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEEC
Confidence 456655542 011 11111110 12357777665 999999999999999999
Q ss_pred CCCCCCHHH-HHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEeCCcEEE--EECC
Q 047682 1005 PTSGLDARA-AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI--YVGP 1063 (1425)
Q Consensus 1005 PTsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~--y~G~ 1063 (1425)
||+|+|+.. ...++.+|+.+.+. |+++|++||+++ .+...+|++.++. |++. +.|+
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~~~~~~~ 936 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMACMVENE 936 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEEEC----
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEEEEEecC
Confidence 999999987 46678899999876 999999999986 3556789988874 5666 4454
No 157
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.58 E-value=1.8e-15 Score=197.19 Aligned_cols=149 Identities=15% Similarity=0.088 Sum_probs=106.7
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhc--------CCCCCceEEEEEEEcCccCCcccccceEEEeecCCC
Q 047682 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--------GRKTGGYITGNIKISGYPKKQETFARISGYCEQNDI 922 (1425)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~--------g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~ 922 (1425)
...+++|+|+.+.+|++++|+|||||||||||++++ |..-+ ..+. .++.+ +.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp--a~~~---------------~~~~~---d~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP--CESA---------------EVSIV---DC 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS--EEEE---------------EEECC---SE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc--cccc---------------cchHH---HH
Confidence 346899999999999999999999999999999994 32111 0110 01110 00
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHH--hhCCcEE
Q 047682 923 HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSII 1000 (1425)
Q Consensus 923 ~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L--~~~p~il 1000 (1425)
. +..+|+. |.. .+++|++++++..+|++| +.+|+++
T Consensus 708 i----------------------------------~~~ig~~---d~l-----~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 708 I----------------------------------LARVGAG---DSQ-----LKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp E----------------------------------EEECC-----------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred H----------------------------------HHhcCch---hhH-----HHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 0 0111111 111 235888888888888888 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1001 FMDEPTSGLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1001 lLDEPTsgLD~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
+|||||+|+|+.....+ +.+++.+.+ .|+|+|++||++ ++.+++|++..+++ |++.+.+..
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~ 808 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTE 808 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEET
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecC
Confidence 99999999999988877 667777876 499999999996 46789999999987 687777664
No 158
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.58 E-value=1.3e-16 Score=179.80 Aligned_cols=163 Identities=14% Similarity=0.146 Sum_probs=102.0
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhc--CC-CCCceEEEEEEEcCccCCcc--cccceEEEeecCCCCCCCCCHHHHHH
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLA--GR-KTGGYITGNIKISGYPKKQE--TFARISGYCEQNDIHSPNVTVYESLL 934 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~--g~-~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~Q~~~~~~~lTv~E~l~ 934 (1425)
+.|++|++++|+||||||||||+++|+ |. ..+ .|.+.+++...... ...+.+||.+|+....+.+++.+...
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 101 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVS 101 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC---
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccc
Confidence 479999999999999999999999999 54 322 34566665432211 11233466666543334444433321
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC----
Q 047682 935 YSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD---- 1010 (1425)
Q Consensus 935 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD---- 1010 (1425)
.... . ........ ....+.++..+...+..-..+|+++++||||++||
T Consensus 102 ~~~~------~----~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d 153 (251)
T 2ehv_A 102 SVVG------L----PSEEKFVL------------------EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEE 153 (251)
T ss_dssp --------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSS
T ss_pred cccc------c----ccccceec------------------cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCC
Confidence 1000 0 00000000 01234455555444544568999999999999998
Q ss_pred -HHHHHHHHHHHHHHHhCCCEEEEEecCccHHH---------HHhc-CEEEEEeC
Q 047682 1011 -ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI---------FEAF-DELFLMKR 1054 (1425)
Q Consensus 1011 -~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~---------~~~f-D~v~~l~~ 1054 (1425)
...+..+.+.++.+.+.|+|||+++|+++. . ...+ |++++|++
T Consensus 154 ~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~-~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 154 ERKIREVLLKLNTILLEMGVTTILTTEAPDP-QHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp GGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEECCCCC-CcccccccChhhEeeeEEEEEee
Confidence 677777999999988789999999999863 4 4678 99999973
No 159
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.57 E-value=2.1e-15 Score=196.55 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=70.4
Q ss_pred ccCChhhhhhHHHHHHH--hcCCcEeEEecCCCCCChHHHHHH-HHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEE
Q 047682 291 RGISGGQRKRVTTGEML--VGPALALFMDEISTGLDSSTTFQI-VTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILI 367 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al--~~~p~illLDEptsgLD~~t~~~i-~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 367 (1425)
+++|+|+++++.+|+++ +.+|+++||||||+|||+.....+ ...++.+.+..+.++++ ++|. .++.+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~-aTH~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF-ATHF-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEE-EESC-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEE-EcCc-HHHHHHhccccee
Confidence 46888888888888888 999999999999999999998888 55666665434555555 5666 5677899999999
Q ss_pred cCCeEEEecChhHH
Q 047682 368 SEGQIVFQGPREHV 381 (1425)
Q Consensus 368 ~~G~iv~~G~~~~~ 381 (1425)
.+|++...++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988876654
No 160
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.56 E-value=4.4e-16 Score=176.34 Aligned_cols=132 Identities=17% Similarity=0.237 Sum_probs=96.0
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceE-EEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
.+|+++| +++|++++|+||||||||||+++|+|... +. +|+|.++|.+.. |++|+...+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCccee-------
Confidence 3788999 89999999999999999999999999643 22 588988886532 233321100
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 047682 932 SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011 (1425)
Q Consensus 932 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~ 1011 (1425)
.. . +.+++.. ..+ |++||++|..+|++|++|||| |+
T Consensus 75 -------v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 75 -------VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp -------EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred -------ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 00 0 0122211 123 899999999999999999999 98
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeC
Q 047682 1012 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1054 (1425)
Q Consensus 1012 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~ 1054 (1425)
.+...+ ++. ++.|.+|++|+|+++ ..+.+|+++.|..
T Consensus 111 ~~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 111 ETVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 886544 443 356999999999986 5678899988864
No 161
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.55 E-value=4.8e-15 Score=185.24 Aligned_cols=155 Identities=12% Similarity=0.073 Sum_probs=111.5
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhh
Q 047682 141 NGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSA 220 (1425)
Q Consensus 141 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 220 (1425)
++.+++|++++|+||||||||||++.++|...+. |+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 5689999999999999999999999999987653 42 12455666531 02222211
Q ss_pred hhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhh
Q 047682 221 RCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKR 300 (1425)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 300 (1425)
++ + .+. +. +...|+....+. .+..|||||+||
T Consensus 330 ~~-g-----------------------~~~------------------~~-~~~~g~~~~~~~-----~p~~LS~g~~q~ 361 (525)
T 1tf7_A 330 SW-G-----------------------MDF------------------EE-MERQNLLKIVCA-----YPESAGLEDHLQ 361 (525)
T ss_dssp TT-S-----------------------CCH------------------HH-HHHTTSEEECCC-----CGGGSCHHHHHH
T ss_pred Hc-C-----------------------CCH------------------HH-HHhCCCEEEEEe-----ccccCCHHHHHH
Confidence 00 0 000 01 123455444443 345699999999
Q ss_pred HHHHHHHhcCCcEeEEecCCCCCChH-----HHHHHHHHHHHHHHhcCCEEEEEEecCh----------hhHHhhcCeEE
Q 047682 301 VTTGEMLVGPALALFMDEISTGLDSS-----TTFQIVTSLRQIIHILNGTAVISLLQPA----------PETYDLFDDII 365 (1425)
Q Consensus 301 vsia~al~~~p~illLDEptsgLD~~-----t~~~i~~~L~~~~~~~~~t~ii~~~q~~----------~~~~~~~D~vi 365 (1425)
+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+.+ .+.|++++ +|.. ..+..++|+|+
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilv-sh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFT-NTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEE-EECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEE-ECcccccCcccccCcccceeeeEEE
Confidence 99999999999999999 99999999 89999998888754 45566664 5554 66778999999
Q ss_pred EEcCCe
Q 047682 366 LISEGQ 371 (1425)
Q Consensus 366 lL~~G~ 371 (1425)
+|++|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999886
No 162
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.54 E-value=3.6e-16 Score=183.81 Aligned_cols=181 Identities=12% Similarity=0.110 Sum_probs=123.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC----------CccceEEEEcc
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF----------VPQRTAAYISQ 202 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----------~~~~~~~yv~Q 202 (1425)
...+|+++ +.|.+|++++|+||||||||||+++|+|..+|+ .|.|.+.|++..+. ..++.+.++.|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 45699999 999999999999999999999999999999998 89999988642111 01245677776
Q ss_pred CCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccc
Q 047682 203 HDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCAD 282 (1425)
Q Consensus 203 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 282 (1425)
.+. ...+.+.-.... ..+ .+ .....| .|
T Consensus 134 ~~~-----~~~~r~~~~~~~----------~~~--------------------------------ae-~~~~~~----~~ 161 (347)
T 2obl_A 134 SDR-----PALERMKAAFTA----------TTI--------------------------------AE-YFRDQG----KN 161 (347)
T ss_dssp TTS-----CHHHHHHHHHHH----------HHH--------------------------------HH-HHHTTT----CE
T ss_pred CCC-----CHHHHHHHHHHH----------HHH--------------------------------HH-HHHhcc----cc
Confidence 432 222222111000 000 00 000001 01
Q ss_pred ccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCE-----EEEEEecChhhH
Q 047682 283 TMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGT-----AVISLLQPAPET 357 (1425)
Q Consensus 283 t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t-----~ii~~~q~~~~~ 357 (1425)
..+--+.+..+|+|| |||++| +++|++ |+|||+....++.+.++++.+..+++ +|+..+|+..
T Consensus 162 vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-- 229 (347)
T 2obl_A 162 VLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-- 229 (347)
T ss_dssp EEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--
T ss_pred HHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--
Confidence 000002244699999 899999 688877 99999999999999998874312344 5555667765
Q ss_pred HhhcCeEEEEcCCeEEEecChhHH
Q 047682 358 YDLFDDIILISEGQIVFQGPREHV 381 (1425)
Q Consensus 358 ~~~~D~vilL~~G~iv~~G~~~~~ 381 (1425)
..+||++++|.+|+++..|+.++.
T Consensus 230 ~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred ChhhhheEEeeCcEEEEeCCHHHc
Confidence 678999999999999999987765
No 163
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.53 E-value=2.9e-16 Score=184.59 Aligned_cols=175 Identities=14% Similarity=0.189 Sum_probs=121.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc----------ccccceEEEeecCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ----------ETFARISGYCEQND 921 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~----------~~~~~~~gyv~Q~~ 921 (1425)
..+|+++ +.|.+||+++|+||||||||||+++|+|...++ .|.+.+.|.+..+ ..+.+.+.++.|.+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 4589999 999999999999999999999999999976543 6888888864211 12345677887754
Q ss_pred CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEE
Q 047682 922 IHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1001 (1425)
Q Consensus 922 ~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~ill 1001 (1425)
. ...+.+.-.. ....+.+.....+ .+...-...+..||+|| ||+++| +.+|++
T Consensus 136 ~-----~~~~r~~~~~------------~~~~~ae~~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~-- 188 (347)
T 2obl_A 136 R-----PALERMKAAF------------TATTIAEYFRDQG----KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV-- 188 (347)
T ss_dssp S-----CHHHHHHHHH------------HHHHHHHHHHTTT----CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC--
T ss_pred C-----CHHHHHHHHH------------HHHHHHHHHHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc--
Confidence 2 2222221100 0000111111111 01000001245799999 899999 688887
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1002 MDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1002 LDEPTsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
|+|||+.....+.+.++++.+ .|. ||++++|+.+ ...+|+++++.+ |+++..|++
T Consensus 189 ----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 189 ----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTREL 250 (347)
T ss_dssp ----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHH
T ss_pred ----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCH
Confidence 999999999999999999874 477 8999999987 356899999986 788887764
No 164
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.53 E-value=1.3e-15 Score=169.39 Aligned_cols=154 Identities=16% Similarity=0.127 Sum_probs=92.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC----CcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHH
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSL----KLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLA 217 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~----~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 217 (1425)
+-+++|++++|+||||||||||++.|+|...+.. .-.|.+.+++.+.. ..+.++++.|+..+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 4699999999999999999999999999654420 01345666654210 01233344443222222 3333332
Q ss_pred hhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChh-
Q 047682 218 FSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGG- 296 (1425)
Q Consensus 218 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG- 296 (1425)
+.. ..+++
T Consensus 96 ~~~-----------------------------------------------------------------------~~~~~~ 104 (231)
T 4a74_A 96 VAR-----------------------------------------------------------------------AFNSNH 104 (231)
T ss_dssp EEE-----------------------------------------------------------------------CCSHHH
T ss_pred EEe-----------------------------------------------------------------------cCChHH
Confidence 211 12222
Q ss_pred hhhhHHHHHHHh-------cCCcEeEEecCCCCCChHH------------HHHHHHHHHHHHHhcCCEEEEEEecChh--
Q 047682 297 QRKRVTTGEMLV-------GPALALFMDEISTGLDSST------------TFQIVTSLRQIIHILNGTAVISLLQPAP-- 355 (1425)
Q Consensus 297 qrqRvsia~al~-------~~p~illLDEptsgLD~~t------------~~~i~~~L~~~~~~~~~t~ii~~~q~~~-- 355 (1425)
+++++..+++++ .+|+++++||||+++|+.. ..++++.|+++++..+.|+|+ ++|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~-vtH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFV-TNQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEE-EEECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEE-EeecccCc
Confidence 222233343333 4899999999999999842 237888888887766555555 677444
Q ss_pred --hHHhhcCeEEEEcCCe
Q 047682 356 --ETYDLFDDIILISEGQ 371 (1425)
Q Consensus 356 --~~~~~~D~vilL~~G~ 371 (1425)
.+...+|+++.|++|+
T Consensus 184 g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 184 GHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ------CCSEEEEEEECT
T ss_pred chhhHhhceEEEEEEecC
Confidence 3788999999998753
No 165
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.53 E-value=4.9e-15 Score=192.53 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=97.9
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 047682 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVY 930 (1425)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 930 (1425)
++.+++|||+.+++|++++|+|||||||||||+++++...... .|...+.. ...++++ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-------~g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-------IGSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-------HTCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-------cCccccch--hhhhhHH---HHHHHhCChH
Confidence 3579999999999999999999999999999999975211000 01101100 0011111 1111122211
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 047682 931 ESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010 (1425)
Q Consensus 931 E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD 1010 (1425)
+++ .. +.+.+|+|++|++.|+++ +.+|++++|||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 11 134689999999999998 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCEEEEEecCccHHHHHhcCE
Q 047682 1011 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDE 1048 (1425)
Q Consensus 1011 ~~~~~~i~-~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~ 1048 (1425)
+.....+. .+++.+.+ .|+|||++||+++ +.+++|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 99988887 67777765 5999999999975 4555554
No 166
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.53 E-value=7.7e-16 Score=171.14 Aligned_cols=152 Identities=17% Similarity=0.166 Sum_probs=93.0
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcC--CCCCc---eEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG---YITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLL 934 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g--~~~~~---~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 934 (1425)
+-+++|++++|+||||||||||+++|+| ..+++ ...+.+.+++..... .+.++++.|...+.+. |+.|++.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5699999999999999999999999998 33211 123456666543100 0112223332222211 2222211
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH-HHHHHHHHHHHhh-------CCcEEEEeCCC
Q 047682 935 YSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 1006 (1425)
Q Consensus 935 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG-qrqRl~ia~~L~~-------~p~illLDEPT 1006 (1425)
+. ...+.+ +++++..+.+++. +|+++++||||
T Consensus 96 ----------------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 ----------------------------VA------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp ----------------------------EE------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred ----------------------------EE------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 10 113333 3344566666666 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCccH---HHHHhcCEEEEEeCC
Q 047682 1007 SGLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSI---DIFEAFDELFLMKRG 1055 (1425)
Q Consensus 1007 sgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~---~~~~~fD~v~~l~~G 1055 (1425)
+++|+. . ...+++.|+++++ .|+|||+++|..+. .+...+|+++.|++|
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999983 2 2367777877764 49999999995431 266788999999874
No 167
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.51 E-value=4.9e-17 Score=178.63 Aligned_cols=145 Identities=15% Similarity=0.141 Sum_probs=111.2
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCC--CCCCHHHHHHHHhhc
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHS--PNVTVYESLLYSAWL 939 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~lTv~E~l~~~~~l 939 (1425)
.++|+++||+||||||||||+++|+|...+ .++|++|++.++ ..+|++|++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 468999999999999999999999986421 368999998776 5689998865421
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHH----HHHHHHHHHHhhCCcEEEEeCCCCC-------
Q 047682 940 RLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 1008 (1425)
Q Consensus 940 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGq----rqRl~ia~~L~~~p~illLDEPTsg------- 1008 (1425)
..+... ..+.+.+.++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAF----DLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGB----CHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhh----hHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111111 123466777887776655443 34689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEecCc
Q 047682 1009 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 1038 (1425)
Q Consensus 1009 LD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~ 1038 (1425)
||+.....+.+.+++. .+.|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45699999999974
No 168
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.50 E-value=4.5e-16 Score=170.95 Aligned_cols=144 Identities=15% Similarity=0.096 Sum_probs=104.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCC--CCCCHHHHHHhhhh
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHI--GEMTVRETLAFSAR 221 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 221 (1425)
.++|++++|+||||||||||+++|+|.+.| .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998753 488999987665 56799988765321
Q ss_pred hcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh----
Q 047682 222 CQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQ---- 297 (1425)
Q Consensus 222 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq---- 297 (1425)
.. . ..........++.+++.+..+.. ...+|+||
T Consensus 61 ~~---~----------------------------------~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HP---D----------------------------------AFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPR 98 (211)
T ss_dssp SG---G----------------------------------GBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSS
T ss_pred Ch---h----------------------------------hhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCC
Confidence 00 0 00011234456667776544432 34589996
Q ss_pred hhhHHHHHHHhcCCcEeEEecCCCC-------CChHHHHHHHHHHHHHHHhcCCEEEEEEe
Q 047682 298 RKRVTTGEMLVGPALALFMDEISTG-------LDSSTTFQIVTSLRQIIHILNGTAVISLL 351 (1425)
Q Consensus 298 rqRvsia~al~~~p~illLDEptsg-------LD~~t~~~i~~~L~~~~~~~~~t~ii~~~ 351 (1425)
+||+++|++++.+|+++++||||++ ||+.....+.+.+++..+..+.|++.+.|
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4789999999999999999999999 99999999999888764444555554334
No 169
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.50 E-value=2e-15 Score=199.34 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=110.6
Q ss_pred ceeeeceEEEEeC-------CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEE-EEccCCC
Q 047682 134 FTILKDVNGIVKP-------SRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAA-YISQHDV 205 (1425)
Q Consensus 134 ~~iL~~vs~~i~~-------G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~-yv~Q~d~ 205 (1425)
..+++|+|+.+++ |++++|+||||||||||||.+ |.+.+ ..++| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC
Confidence 4689999999987 999999999999999999999 98753 12344 9999753
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 047682 206 HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMV 285 (1425)
Q Consensus 206 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 285 (1425)
.+||.|+|.. + +|+.+..+
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~--- 846 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIM--- 846 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHh---
Confidence 4555554421 0 01100000
Q ss_pred cCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHH-HHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 286 GDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTT-FQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 286 g~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~-~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
.+...+|++++ ++++|++++.+|+++|||||++|+|+... ..++..|+.+.+..+.+ ++.++|..+.+...+|++
T Consensus 847 --~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~-vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 847 --SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCR-TLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCE-EEEECCCHHHHHHTSSCS
T ss_pred --hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCE-EEEEeCCHHHHHHhCCcc
Confidence 11124677666 49999999999999999999999999885 44678888886543444 455688888888889998
Q ss_pred EEEcCCeEE--EecChhH
Q 047682 365 ILISEGQIV--FQGPREH 380 (1425)
Q Consensus 365 ilL~~G~iv--~~G~~~~ 380 (1425)
.++ +|++. +.|+.++
T Consensus 923 ~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECED 939 (1022)
T ss_dssp SEE-EEEEEEC-------
T ss_pred eee-cCeEEEEEecCccc
Confidence 887 58887 5565443
No 170
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.49 E-value=2.2e-16 Score=169.75 Aligned_cols=159 Identities=22% Similarity=0.253 Sum_probs=104.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-ccceEEEEccCCCCCCCCCHHHHHHhhhhhcCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 225 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 225 (1425)
|++++|+||||||||||+++|+|.++ + +| |.++|.+..+.. .++.++|++|+. .. + ++++ ++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g--~-~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SG--T-RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TS--C-EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--cc--c-eehh---hcccc-
Confidence 78999999999999999999999987 6 89 999887764432 257799999963 11 1 1111 00000
Q ss_pred CCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHH-HH
Q 047682 226 GSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT-TG 304 (1425)
Q Consensus 226 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs-ia 304 (1425)
.++ +...+..+|.. ...+|||||+++. ++
T Consensus 67 -------------------~~~------------------------------~~~~~~~v~~~-~~~ls~~er~~~~~l~ 96 (189)
T 2i3b_A 67 -------------------EPP------------------------------PGKRECRVGQY-VVDLTSFEQLALPVLR 96 (189)
T ss_dssp -------------------CCC------------------------------SSSCCEESSSS-EECHHHHHTTTTTTTC
T ss_pred -------------------cCC------------------------------ccccccccceE-EEcchHHHHHHHHHHh
Confidence 000 00012244433 3459999999984 44
Q ss_pred H---HHhcCCcEeEEec--CCCCCChHHHHHHHHHHHHHHHhcCCEEEE---EEecChhhHHhhcCeEEEEcCCeEEEec
Q 047682 305 E---MLVGPALALFMDE--ISTGLDSSTTFQIVTSLRQIIHILNGTAVI---SLLQPAPETYDLFDDIILISEGQIVFQG 376 (1425)
Q Consensus 305 ~---al~~~p~illLDE--ptsgLD~~t~~~i~~~L~~~~~~~~~t~ii---~~~q~~~~~~~~~D~vilL~~G~iv~~G 376 (1425)
+ |+..+|++++||| |+..+|.... +.|+++.+. ..++|+ +++|..+ ..+.|+|..+.+|+|+...
T Consensus 97 ~~a~A~~~~~dvlilDE~g~~~~~~~~~~----~~l~~~l~~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 97 NADCSSGPGQRVCVIDEIGKMELFSQLFI----QAVRQTLST-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCCCSSCCCCEEECCCSTTTTTCSHHH----HHHHHHHHC-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred hhhHhhccCCCEEEEeCCCccccccHHHH----HHHHHHHhC-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 4 5889999999999 8988998764 444444432 345553 2335543 3567888888889987643
No 171
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.49 E-value=6.7e-15 Score=188.79 Aligned_cols=133 Identities=20% Similarity=0.131 Sum_probs=97.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
..+++|+|+. |++++|+|||||||||||++|+|..... ..|.+ ... .+..+|+++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~-~~G~~------vpa--~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA-QVGSF------VPA--EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH-TTTCC------BSS--SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc-ccCce------eeh--hccceeeHHH---hhccCCHHH
Confidence 5699999999 9999999999999999999999843100 01211 111 1234677766 445556555
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHH--hhCCcEEEEeCC---C
Q 047682 932 SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP---T 1006 (1425)
Q Consensus 932 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L--~~~p~illLDEP---T 1006 (1425)
++. .++|+|+++++.+|+++ +.+|++++|||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 431 14799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCccHHHHHhc
Q 047682 1007 SGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1046 (1425)
Q Consensus 1007 sgLD~~~~-~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~f 1046 (1425)
++||..+. ..+++.|++ .|+|+|++||+++ ..+.+
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~ 704 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG 704 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh
Confidence 99999875 567777766 4899999999964 44443
No 172
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.49 E-value=2e-15 Score=178.37 Aligned_cols=169 Identities=19% Similarity=0.191 Sum_probs=100.4
Q ss_pred eeeece-EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCC-CcccE-EEECCccCCCCCccceEEEEccCCCCCCC
Q 047682 135 TILKDV-NGIVKPSRLTLLLGPPASGKTTLLLALAGKL--DPSL-KLSGR-VTYNGHNMDEFVPQRTAAYISQHDVHIGE 209 (1425)
Q Consensus 135 ~iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~-~~~G~-V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 209 (1425)
+.|+++ ++.+++|++++|+||||||||||++.|++.. +|+. ...|+ |++++.+.- .++++++++|+..+.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH
Confidence 346665 6899999999999999999999999999987 4440 11367 888886431 13456667775443333
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
++.||+.+....
T Consensus 195 -~v~~ni~~~~~~------------------------------------------------------------------- 206 (349)
T 1pzn_A 195 -EVLKHIYVARAF------------------------------------------------------------------- 206 (349)
T ss_dssp -HHGGGEEEEECC-------------------------------------------------------------------
T ss_pred -HHhhCEEEEecC-------------------------------------------------------------------
Confidence 555554432100
Q ss_pred cccCChhhhhhHHHHHHHh-------cCCcEeEEecCCCCCChHH------------HHHHHHHHHHHHHhcCCEEEEEE
Q 047682 290 LRGISGGQRKRVTTGEMLV-------GPALALFMDEISTGLDSST------------TFQIVTSLRQIIHILNGTAVISL 350 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~-------~~p~illLDEptsgLD~~t------------~~~i~~~L~~~~~~~~~t~ii~~ 350 (1425)
-|++|++++.++++++ .+|+++++||||+++|+.. ..++++.|+++++..+.|+|+ +
T Consensus 207 ---~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii-~ 282 (349)
T 1pzn_A 207 ---NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFV-T 282 (349)
T ss_dssp ---SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEE-E
T ss_pred ---ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEE-E
Confidence 0223333333333333 7899999999999999852 356677777777665555555 5
Q ss_pred ecChhhHHhhcCeEEEEcCCeEEEecCh
Q 047682 351 LQPAPETYDLFDDIILISEGQIVFQGPR 378 (1425)
Q Consensus 351 ~q~~~~~~~~~D~vilL~~G~iv~~G~~ 378 (1425)
+|........+++......|+++.++..
T Consensus 283 ~h~~~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 283 NQVQARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp EECC---------------CCCCCTTCS
T ss_pred cccccccccccCCccccCCcceEeecCc
Confidence 6666555555666777778887766553
No 173
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.48 E-value=3.6e-16 Score=181.06 Aligned_cols=156 Identities=13% Similarity=0.061 Sum_probs=85.5
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCC-CCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 047682 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTV 929 (1425)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 929 (1425)
++.+++++++.| +|+|+||||||||++.|+|. .. +.+| +.++|.+.......+.++|++|++.....+|+
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 457999999998 99999999999999999985 33 2356 77777654332223457899998888888999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC-C
Q 047682 930 YESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS-G 1008 (1425)
Q Consensus 930 ~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTs-g 1008 (1425)
.|+.-+..... . .+..+..++.+. +..+.. .+++|||||||+.+||+++ ++++||||+ |
T Consensus 81 ~Dt~g~~~~~~-~----~e~~~~l~~~l~------~~~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 81 VDTPGYGDAIN-C----RDCFKTIISYID------EQFERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EEEC----------------CTTHHHHHH------HHHHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred hhhhhhhhhcC-c----HHHHHHHHHHHH------HHHHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 99887653221 0 011011122221 112222 3469999999999988875 999999998 4
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCcc
Q 047682 1009 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1039 (1425)
Q Consensus 1009 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 1039 (1425)
||+... +.++++.+. +.++|++.||..
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 555666543 788999999964
No 174
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.48 E-value=5.4e-14 Score=144.60 Aligned_cols=83 Identities=23% Similarity=0.313 Sum_probs=68.9
Q ss_pred CcccccCChhhhhhHHHH------HHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh
Q 047682 287 DEMLRGISGGQRKRVTTG------EMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDL 360 (1425)
Q Consensus 287 ~~~~~~LSGGqrqRvsia------~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~ 360 (1425)
++.+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.++++.+. +.|+|+ ++|+. +..+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii-vsH~~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVIL-VSHDE-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEE-EESCG-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEE-EEChH-HHHHh
Confidence 445677999999999876 8999999999999999999999999999999987542 455555 56666 67899
Q ss_pred cCeEEEE--cCCeE
Q 047682 361 FDDIILI--SEGQI 372 (1425)
Q Consensus 361 ~D~vilL--~~G~i 372 (1425)
+|++++| .+|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 45643
No 175
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.48 E-value=3.9e-15 Score=167.71 Aligned_cols=168 Identities=11% Similarity=0.080 Sum_probs=93.6
Q ss_pred eece-EEEEeCCeEEEEEcCCCCcHHHHHHHHh--cCCCCCCCcccEEEECCccCCCCCc--cceEEEEccCCCCCCCCC
Q 047682 137 LKDV-NGIVKPSRLTLLLGPPASGKTTLLLALA--GKLDPSLKLSGRVTYNGHNMDEFVP--QRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 137 L~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~--G~~~~~~~~~G~V~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~lT 211 (1425)
|+++ .+.+++|++++|+||||||||||+++|+ |...+. +|.+.+++....+... .+.++|++|+....+.++
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA 95 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE
Confidence 4443 2479999999999999999999999999 663444 5667776643211000 122334443322122222
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
+.++........ .... .. ...
T Consensus 96 ~~~~~~~~~~~~--------------------------------------------~~~~----------~~-----~~~ 116 (251)
T 2ehv_A 96 IVDGVSSVVGLP--------------------------------------------SEEK----------FV-----LED 116 (251)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred EEEccccccccc--------------------------------------------cccc----------ee-----ccC
Confidence 222111100000 0000 00 001
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEecCCCCCC-----hHHHHHHHHHHHHHHHhcCCEEEEEEecChhhH---------
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMDEISTGLD-----SSTTFQIVTSLRQIIHILNGTAVISLLQPAPET--------- 357 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLDEptsgLD-----~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~--------- 357 (1425)
..+-++..+...+..-..+|+++++||||++|| ...+..+.+.++.+.+ .+.|+++ ++|...+.
T Consensus 117 ~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii~-vtH~~~~~~~~~~~~~i 194 (251)
T 2ehv_A 117 RFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTIL-TTEAPDPQHGKLSRYGI 194 (251)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEE-EECCC----CCSSSSSC
T ss_pred cccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEE-EECCCCCCcccccccCh
Confidence 122334444444444467999999999999997 6666668888887754 4555555 66776666
Q ss_pred Hhhc-CeEEEEc
Q 047682 358 YDLF-DDIILIS 368 (1425)
Q Consensus 358 ~~~~-D~vilL~ 368 (1425)
..+| |+|++|+
T Consensus 195 ~~~~aD~vi~l~ 206 (251)
T 2ehv_A 195 EEFIARGVIVLD 206 (251)
T ss_dssp GGGGCSEEEEEE
T ss_pred hhEeeeEEEEEe
Confidence 6788 9999995
No 176
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.47 E-value=1.7e-15 Score=175.35 Aligned_cols=157 Identities=13% Similarity=0.154 Sum_probs=79.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC-CCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGK-LDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~-~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 210 (1425)
+++.+++|+++.| +|+||||||||||++.|.|. ..|+ +| |.++|.++..-...+.++|++|++.....+
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~l 78 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRL 78 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCc
Confidence 4567999999998 99999999999999999997 7776 78 888887664322235689999988878889
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEML 290 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 290 (1425)
||.||..++..... ..+++ ...+.+.+. .+ ...
T Consensus 79 tv~Dt~g~~~~~~~-~e~~~-----------------------------------~l~~~l~~~------~~-----~~~ 111 (301)
T 2qnr_A 79 TVVDTPGYGDAINC-RDCFK-----------------------------------TIISYIDEQ------FE-----RYL 111 (301)
T ss_dssp EEEEEC------------CT-----------------------------------THHHHHHHH------HH-----HHH
T ss_pred chhhhhhhhhhcCc-HHHHH-----------------------------------HHHHHHHHH------HH-----HHH
Confidence 99999887532110 00000 001111111 11 234
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCC-CChHHHHHHHHHHHHHHHhcCCEEEEEEecCh
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTG-LDSSTTFQIVTSLRQIIHILNGTAVISLLQPA 354 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsg-LD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~ 354 (1425)
+++|||||||+.+||+++ ++++||||++ ||+... +.++++.. ..+.+++...|+.
T Consensus 112 ~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 112 HDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGG
T ss_pred HHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCC
Confidence 569999999999998885 9999999985 999872 45555532 1234445445544
No 177
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.47 E-value=7.4e-15 Score=166.24 Aligned_cols=133 Identities=18% Similarity=0.233 Sum_probs=93.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHH
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
++|+|+| +++|++++|+||||||||||+++|+|.++|+ .+|+|.++|.++. |++|+...
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~---------~~~~~~~~-------- 73 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE---------YVFKHKKS-------- 73 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC---------SCCCCSSS--------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce---------eecCCcce--------
Confidence 4899999 8999999999999999999999999998763 1799999987642 33332100
Q ss_pred HHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 047682 215 TLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGIS 294 (1425)
Q Consensus 215 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LS 294 (1425)
+. .+ +.+|++. ..+
T Consensus 74 ---~v--~q-------------------------------------------------~~~gl~~-----------~~l- 87 (261)
T 2eyu_A 74 ---IV--NQ-------------------------------------------------REVGEDT-----------KSF- 87 (261)
T ss_dssp ---EE--EE-------------------------------------------------EEBTTTB-----------SCH-
T ss_pred ---ee--eH-------------------------------------------------HHhCCCH-----------HHH-
Confidence 00 00 0011210 012
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
|++||++|..+|+++++|||| |..+...++ +. +. .+.++++ ++|... ..+.+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~-~g~~vl~-t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AE-TGHLVFG-TLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HH-TTCEEEE-EECCSS-HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-Hc-cCCEEEE-EeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 988865544 33 22 3555544 555544 6788999988854
No 178
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.46 E-value=1e-14 Score=188.13 Aligned_cols=154 Identities=14% Similarity=0.046 Sum_probs=102.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
+.+++|+|+. ++|++++|+|||||||||||++|+|....+. .|...+.. ...++++.| +++.+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 4689999999 9999999999999999999999998421000 12111111 123555555 444555555
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 047682 932 SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011 (1425)
Q Consensus 932 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~ 1011 (1425)
++... .+.+|+|+++ +..+..++.+|++++|||||+|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 54210 1235666654 4555567899999999999999999
Q ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEE
Q 047682 1012 RAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1061 (1425)
Q Consensus 1012 ~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~ 1061 (1425)
.....+ +.+++.+.+ .|+|+|++||+++ +.+.+|++..+.+ |++.+.
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~ 750 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDAL 750 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEE
Confidence 776665 778888887 4999999999985 4567787655654 454443
No 179
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.46 E-value=4.2e-14 Score=183.86 Aligned_cols=80 Identities=9% Similarity=0.103 Sum_probs=59.3
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHH-HHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE-Ec
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIV-TSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL-IS 368 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~-~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil-L~ 368 (1425)
..+|+|++|++.++++ +.+|+++||||||+|||+.....+. ..++.+.+..+.++++ ++|.. ++.+++|+.-- +.
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~-vTH~~-el~~l~~~~~~~v~ 810 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLF-VTHYP-PVCELEKNYSHQVG 810 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEE-ECSCG-GGGGHHHHTTTTEE
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEE-EeCcH-HHHHHHhhcccceE
Confidence 4589999999999998 8999999999999999999999887 6667665544555555 56664 55567765421 33
Q ss_pred CCeEE
Q 047682 369 EGQIV 373 (1425)
Q Consensus 369 ~G~iv 373 (1425)
++++.
T Consensus 811 n~~~~ 815 (918)
T 3thx_B 811 NYHMG 815 (918)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44443
No 180
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.46 E-value=1.6e-13 Score=167.37 Aligned_cols=75 Identities=16% Similarity=0.286 Sum_probs=63.1
Q ss_pred ccCChhhhhhHHHHHHHh----cCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE
Q 047682 291 RGISGGQRKRVTTGEMLV----GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL 366 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~----~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 366 (1425)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.. .++.++.++|+ .+..+.||+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEEE
Confidence 459999999999999999 68999999999999999999999999988642 23444445666 567889999999
Q ss_pred Ec
Q 047682 367 IS 368 (1425)
Q Consensus 367 L~ 368 (1425)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 181
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.45 E-value=3.2e-15 Score=172.72 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=101.9
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc-------cc--cceEEEeecCCCCCCCCCHHHHHH
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE-------TF--ARISGYCEQNDIHSPNVTVYESLL 934 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~~~~~lTv~E~l~ 934 (1425)
+|++++|+||||||||||+++|+|...+ ..|+|.++|.+.... .+ ++.++|++|+....|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 7999999999999999999999996443 257899999875321 11 245899999998889999999987
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 047682 935 YSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014 (1425)
Q Consensus 935 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~ 1014 (1425)
+...-. .+ ..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~~~--~d----------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARG--YD----------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHT--CS----------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCC--CC----------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 642110 00 012222333322221 2455669999999999999994333 3444444
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCcc
Q 047682 1015 AIVMRTVRNTVDT-GRTVVCTIHQPS 1039 (1425)
Q Consensus 1015 ~~i~~~l~~~~~~-g~tvi~~~H~~~ 1039 (1425)
..+++.++++.+. |.|+|++||+..
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 4556666666544 899999999853
No 182
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.44 E-value=8.2e-15 Score=169.28 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=103.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---------cceEEEEccCCCCCCCCCHHHHH
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---------QRTAAYISQHDVHIGEMTVRETL 216 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 216 (1425)
+|++++|+||||||||||++.|+|.+.|+ +|+|.++|.+...... ++.++|++|+....|..||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 78999999999999999999999999987 9999999988754321 24589999998888889999999
Q ss_pred HhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChh
Q 047682 217 AFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGG 296 (1425)
Q Consensus 217 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 296 (1425)
.++... + ++. .+++..|+.+..+ +-++..
T Consensus 178 ~~~~~~-~----~d~--------------------------------------~llDt~G~~~~~~--------~~~~eL 206 (304)
T 1rj9_A 178 QAMKAR-G----YDL--------------------------------------LFVDTAGRLHTKH--------NLMEEL 206 (304)
T ss_dssp HHHHHH-T----CSE--------------------------------------EEECCCCCCTTCH--------HHHHHH
T ss_pred HHHHhC-C----CCE--------------------------------------EEecCCCCCCchH--------HHHHHH
Confidence 875321 1 000 0011122221111 124455
Q ss_pred hhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecC
Q 047682 297 QRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQP 353 (1425)
Q Consensus 297 qrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~ 353 (1425)
+|||++|||+++.+|+.++| .||+.+..++++.++.+.+..+.|.++ ++|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~ii-vTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVI-VTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEE-EECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEE-EECC
Confidence 58999999999999995554 566665566677777776555666665 4554
No 183
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.44 E-value=3.5e-15 Score=188.73 Aligned_cols=165 Identities=18% Similarity=0.174 Sum_probs=109.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC-CCCcccEEEECCccCC------CCCccceEEEEccCCCCCCCCCHHHHHHhhhhh
Q 047682 150 TLLLGPPASGKTTLLLALAGKLDP-SLKLSGRVTYNGHNMD------EFVPQRTAAYISQHDVHIGEMTVRETLAFSARC 222 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G~~~~-~~~~~G~V~~~G~~~~------~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 222 (1425)
++|+|||||||||||++|+|...| + +|.|+++|.++. ....++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999877 6 899999998852 112357899999999999999999999876432
Q ss_pred cCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHH
Q 047682 223 QGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT 302 (1425)
Q Consensus 223 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 302 (1425)
.+... .++| ++++.
T Consensus 125 ~~~~~---------------------------------------------------------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGEG---------------------------------------------------------------MGIS---HELIT 138 (608)
T ss_dssp HHCSS---------------------------------------------------------------SCCC---SCCEE
T ss_pred hcCCc---------------------------------------------------------------cccc---hHHHH
Confidence 11000 0011 12222
Q ss_pred HHHHHhcCCcEeEEecC------CCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChh----hHHh---hc-----CeE
Q 047682 303 TGEMLVGPALALFMDEI------STGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAP----ETYD---LF-----DDI 364 (1425)
Q Consensus 303 ia~al~~~p~illLDEp------tsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~----~~~~---~~-----D~v 364 (1425)
++.+....|+++++||| |+|||+....++.+.++++.....+.+++.++|+.+ +..+ .. ..|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22333458999999999 999999999999999998755444555566666544 2222 22 457
Q ss_pred EEEcCCeEEEecChhHHHH
Q 047682 365 ILISEGQIVFQGPREHVLE 383 (1425)
Q Consensus 365 ilL~~G~iv~~G~~~~~~~ 383 (1425)
+|+.++..+..|+.+++.+
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEEECGGGSSSSSTTCCCC
T ss_pred EEecchhhcCcccHHHHHH
Confidence 8899998888887655543
No 184
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.44 E-value=2.6e-15 Score=177.43 Aligned_cols=164 Identities=19% Similarity=0.148 Sum_probs=97.1
Q ss_pred eeece-eEEEeCCeEEEEEcCCCCChhhHHhhhcCCC--C--CceEEEE-EEEcCccCCcccccceEEEeecCCCCCCCC
Q 047682 854 LLNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--T--GGYITGN-IKISGYPKKQETFARISGYCEQNDIHSPNV 927 (1425)
Q Consensus 854 iL~~v-s~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~--~--~~~~~G~-i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~l 927 (1425)
.|+++ ++.+++|++++|+||||||||||++.|++.. . .|...|. +++++.+.. .++.+++++|...+.+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 34444 5889999999999999999999999999853 2 1111255 778775421 11233444444332221
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHh-------hCCcEE
Q 047682 928 TVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-------ANPSII 1000 (1425)
Q Consensus 928 Tv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~-------~~p~il 1000 (1425)
++.||+.+. +. --|.+|+|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~-------------------------------~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVA-------------------------------RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEE-------------------------------EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEE-------------------------------ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 222222110 00 01567778888888887 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEEC
Q 047682 1001 FMDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1062 (1425)
Q Consensus 1001 lLDEPTsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G 1062 (1425)
++||||+++|+.. ...+++.|+++++ .|+|||+|+|... +.-..|+...... ||+++.++
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~~ 308 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAHS 308 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTT
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceEeec
Confidence 9999999999852 3566667777765 4899999999865 3333444444444 45544333
No 185
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.43 E-value=3.1e-14 Score=182.73 Aligned_cols=132 Identities=17% Similarity=0.163 Sum_probs=94.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD-PSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 212 (1425)
..+++|+|+. |++++|+||||||||||||+|+|... +. .|.+. + ..+..+++++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p----a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P----AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S----SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e----hhccceeeHHH---hhccCCH
Confidence 4688999998 99999999999999999999999863 33 45532 1 01245677766 3444555
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
.|++. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55432 14
Q ss_pred CChhhhhhHHHHHHH--hcCCcEeEEecC---CCCCChHHH-HHHHHHHHHHHHhcCCEEEEEEecChhhHHhhc
Q 047682 293 ISGGQRKRVTTGEML--VGPALALFMDEI---STGLDSSTT-FQIVTSLRQIIHILNGTAVISLLQPAPETYDLF 361 (1425)
Q Consensus 293 LSGGqrqRvsia~al--~~~p~illLDEp---tsgLD~~t~-~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~ 361 (1425)
+|+|+++++.+++++ +.+|++++|||| |++||..+. ..+++.|++ .+.++++ ++|.. +..+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~-~TH~~-~l~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLF-ATHYF-ELTALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEE-ECCCH-HHHTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEE-EeCCH-HHHHhh
Confidence 899999999999999 999999999999 999998875 567777765 2556555 56654 334444
No 186
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.43 E-value=1.6e-13 Score=157.57 Aligned_cols=151 Identities=21% Similarity=0.210 Sum_probs=102.0
Q ss_pred EEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhcc
Q 047682 861 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLR 940 (1425)
Q Consensus 861 ~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr 940 (1425)
-+++|++++|+||||||||||++.+++.... |.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~----g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG----GPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT----CCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc----CCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 4889999999999999999999999974322 333 22433211 2346777665532 11112211 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC--CCCHHHH---H
Q 047682 941 LPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARAA---A 1015 (1425)
Q Consensus 941 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTs--gLD~~~~---~ 1015 (1425)
.+... ...+++++.+++.+..+.. +..||+||++++ ++++.+|+++++||||+ ++|.... .
T Consensus 92 --~~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 --AHLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp --TTSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --hhcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 12222 2246677888887765543 456999998865 68889999999999999 9997544 7
Q ss_pred HHHHHHHHHH-hCCCEEEEEecCcc
Q 047682 1016 IVMRTVRNTV-DTGRTVVCTIHQPS 1039 (1425)
Q Consensus 1016 ~i~~~l~~~~-~~g~tvi~~~H~~~ 1039 (1425)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888898886 45999999999864
No 187
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.41 E-value=2.4e-14 Score=168.76 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=84.8
Q ss_pred EEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhcc
Q 047682 861 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLR 940 (1425)
Q Consensus 861 ~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr 940 (1425)
...+|++++|+|||||||||||++|+|..... ..|.|...+.+... ......+++.|.......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~-------------- 182 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRDT-------------- 182 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTB--------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeecccc--------------
Confidence 67899999999999999999999999954311 02333322222111 111112333333221111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 047682 941 LPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020 (1425)
Q Consensus 941 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~ 1020 (1425)
++..+ +||++|..+|++|++|||| |..+...
T Consensus 183 --------------------------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~---- 213 (356)
T 3jvv_A 183 --------------------------------------LGFSE----ALRSALREDPDIILVGEMR---DLETIRL---- 213 (356)
T ss_dssp --------------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHH----
T ss_pred --------------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHH----
Confidence 22222 8999999999999999999 6665443
Q ss_pred HHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCC
Q 047682 1021 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 1021 l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~G 1055 (1425)
+.+++.+|.||++|+|+.+. . +.+||++.|..|
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 34456679999999999873 3 789999988653
No 188
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.41 E-value=2.4e-14 Score=159.19 Aligned_cols=168 Identities=12% Similarity=0.119 Sum_probs=103.7
Q ss_pred eeeeceeE-EEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 853 VLLNGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 853 ~iL~~vs~-~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
..|+++.+ .+++|++++|+||||||||||++.|++.... ..|.+.+.+.+. +..+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~----------------------~~~~ 65 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEE----------------------SRDS 65 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSS----------------------CHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEccc----------------------CHHH
Confidence 46778875 8999999999999999999999999974321 112333322211 1111
Q ss_pred HHHHHhhccCCCCCCHHHHH--HHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCc--EEEEeCCCC
Q 047682 932 SLLYSAWLRLPPDVDSETRR--MFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTS 1007 (1425)
Q Consensus 932 ~l~~~~~lr~~~~~~~~~~~--~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~--illLDEPTs 1007 (1425)
.......+. ......... ..++...+.++ ... .....|.+|.++...+.....+|+ ++++||||+
T Consensus 66 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 66 IIRQAKQFN--WDFEEYIEKKLIIIDALMKEKE-----DQW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp HHHHHHHTT--CCCGGGBTTTEEEEECCC---------CTT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred HHHHHHHhc--chHHHHhhCCEEEEeccccccC-----cee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 110000000 000000000 00000000000 000 012359999998888888888999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCcc-------HHHHHhcCEEEEEeCC
Q 047682 1008 GL--DARAAAIVMRTVRNTVD-TGRTVVCTIHQPS-------IDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 1008 gL--D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~-------~~~~~~fD~v~~l~~G 1055 (1425)
++ |+.....+++.|+++++ .|.|||+++|+.. ..+...+|++++|++.
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88 99999999999999864 5899999999973 2367789999999863
No 189
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.40 E-value=4e-13 Score=149.21 Aligned_cols=77 Identities=14% Similarity=0.051 Sum_probs=62.4
Q ss_pred CChhhhhhHHHHHHHhcCCc--EeEEecCCCCC--ChHHHHHHHHHHHHHHHhcCCEEEEEEecCh--------hhHHhh
Q 047682 293 ISGGQRKRVTTGEMLVGPAL--ALFMDEISTGL--DSSTTFQIVTSLRQIIHILNGTAVISLLQPA--------PETYDL 360 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~--illLDEptsgL--D~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~--------~~~~~~ 360 (1425)
.|.+|.++...+.+...+|+ ++++||||+++ |+....++++.|+++++..+ .+++.++|.. +.+.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~-~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWN-FTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTT-EEEEEEEC-----------CHHHH
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCC-CeEEEEeccCcccccccccchhee
Confidence 58999988888877778999 99999999888 99999999999999987655 4555566766 568889
Q ss_pred cCeEEEEcCC
Q 047682 361 FDDIILISEG 370 (1425)
Q Consensus 361 ~D~vilL~~G 370 (1425)
+|+|++|+..
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999764
No 190
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.40 E-value=1.1e-15 Score=164.40 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=100.0
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPP 943 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~ 943 (1425)
|++++|+||||||||||+++|+|... . +| |.++|....+ ...++.+||++|+.. ... +++ +.+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~---~~l---~~~~~~- 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTR---GPL---SRVGLE- 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEETT--SCE---EEE---EECCCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEecc--cce---ehh---hccccc-
Confidence 78999999999999999999999653 1 35 7777765533 235678899999751 111 111 111100
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHH-HHHH---HHhhCCcEEEEeC--CCCCCCHHHHHHH
Q 047682 944 DVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAIV 1017 (1425)
Q Consensus 944 ~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl-~ia~---~L~~~p~illLDE--PTsgLD~~~~~~i 1017 (1425)
.+ ....+..+|.. ...+|+|||+++ ++++ |+..+|++|+||| ||..+|......+
T Consensus 68 -~~-----------------~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l 128 (189)
T 2i3b_A 68 -PP-----------------PGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV 128 (189)
T ss_dssp -CC-----------------SSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH
T ss_pred -CC-----------------ccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH
Confidence 00 00011233332 235999999988 4444 5789999999999 8999998765555
Q ss_pred HHHHHHHHhCCCEEEE----EecCccHHHHHhcCEEEEEeCCcEEEEECCC
Q 047682 1018 MRTVRNTVDTGRTVVC----TIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1064 (1425)
Q Consensus 1018 ~~~l~~~~~~g~tvi~----~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~ 1064 (1425)
.+++ +...++|+ ++|+.+ ....|+|..+. +|+++...+-
T Consensus 129 ~~~l----~~~~~~ilgti~vsh~~~---~~~vd~i~~~~-~~~i~~~~~~ 171 (189)
T 2i3b_A 129 RQTL----STPGTIILGTIPVPKGKP---LALVEEIRNRK-DVKVFNVTKE 171 (189)
T ss_dssp HHHH----HCSSCCEEEECCCCCSSC---CTTHHHHHTTC-CSEEEECCSS
T ss_pred HHHH----hCCCcEEEEEeecCCCCc---hHHHHHHeecC-CcEEEEeChH
Confidence 5444 34445543 238864 13456666665 4676665543
No 191
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.38 E-value=5.5e-13 Score=153.05 Aligned_cols=153 Identities=14% Similarity=0.155 Sum_probs=99.5
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhh
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARC 222 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 222 (1425)
.+++|++++|+||||||||||++.+++.+. .|++ +.|.+.. ....+.|+..++. . +.+.- +.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~------~-~~~~~--r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDP------P-TAIHH--RL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSC------H-HHHHH--HH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCC------H-HHHHH--HH
Confidence 489999999999999999999999998654 3554 3344321 1346888877543 1 11110 00
Q ss_pred cCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHH
Q 047682 223 QGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT 302 (1425)
Q Consensus 223 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 302 (1425)
...+. + . .....+.+++.+++.+..+. .+..+|+||++++
T Consensus 88 ~~~g~-------------~------~---------------~~~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i- 127 (279)
T 1nlf_A 88 HALGA-------------H------L---------------SAEERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL- 127 (279)
T ss_dssp HHHHT-------------T------S---------------CHHHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH-
T ss_pred HHHHh-------------h------c---------------ChhhhhhccCceEEeecCCC-----CcccCCHHHHHHH-
Confidence 00000 0 0 01123445677777665443 3446999998876
Q ss_pred HHHHHhcCCcEeEEecCCC--CCChHHH---HHHHHHHHHHHHhcCCEEEEEEecChhh
Q 047682 303 TGEMLVGPALALFMDEIST--GLDSSTT---FQIVTSLRQIIHILNGTAVISLLQPAPE 356 (1425)
Q Consensus 303 ia~al~~~p~illLDEpts--gLD~~t~---~~i~~~L~~~~~~~~~t~ii~~~q~~~~ 356 (1425)
++++.+|+++++||||+ ++|.... .++++.|+++++..+.|+|+ ++|....
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~-i~H~~~~ 183 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVF-LHHASKG 183 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEE-EEEC---
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEE-EecCCCc
Confidence 67888999999999999 9998654 78888999987666666555 5665543
No 192
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.38 E-value=1.1e-13 Score=178.72 Aligned_cols=156 Identities=13% Similarity=0.071 Sum_probs=101.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
..+++|+|+. ++|++++|+||||||||||||+|+|..... ..| ..+.. ....++++.| .+..+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccch--hcccceeHHH---HHhhCCHH
Confidence 4589999999 999999999999999999999999974211 012 11100 1123555544 34444555
Q ss_pred HHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 047682 214 ETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293 (1425)
Q Consensus 214 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 293 (1425)
|++..+ ...+
T Consensus 661 d~l~~~----------------------------------------------------------------------~stf 670 (800)
T 1wb9_A 661 DDLASG----------------------------------------------------------------------RSTF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhh----------------------------------------------------------------------hhhh
Confidence 544321 1125
Q ss_pred ChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHH-HHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeE
Q 047682 294 SGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQI-VTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQI 372 (1425)
Q Consensus 294 SGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i-~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 372 (1425)
|+|++ +++.+...+.+|++++||||++|+|+.....+ +..++.+.+..+.++++ ++|.. +..+++|++..+.+|++
T Consensus 671 ~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~-~TH~~-el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLF-ATHYF-ELTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEE-ECSCG-GGGGHHHHSTTEEEEEE
T ss_pred hHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEE-EeCCH-HHHHHhhhhhceEEEEE
Confidence 66665 44444556899999999999999999887775 66777775533555555 56665 45678998877788887
Q ss_pred EEec
Q 047682 373 VFQG 376 (1425)
Q Consensus 373 v~~G 376 (1425)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 193
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.36 E-value=1.3e-12 Score=137.97 Aligned_cols=85 Identities=11% Similarity=0.160 Sum_probs=70.3
Q ss_pred CCcCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEE
Q 047682 976 VSGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1051 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~----~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~ 1051 (1425)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|++ .+.+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 45799999999999999974 4699999999999999999999999999864 57899999996 46789999986
Q ss_pred Ee--CCcEEEEECC
Q 047682 1052 MK--RGGYEIYVGP 1063 (1425)
Q Consensus 1052 l~--~Gg~~~y~G~ 1063 (1425)
+. +|.-.++...
T Consensus 139 v~~~~g~s~~~~~~ 152 (173)
T 3kta_B 139 VSMRDGVSKVVSLS 152 (173)
T ss_dssp EEEETTEEEEEECC
T ss_pred EEecCCEEEEEEEE
Confidence 54 4433444433
No 194
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.35 E-value=3.3e-14 Score=155.51 Aligned_cols=179 Identities=15% Similarity=0.109 Sum_probs=93.5
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC---CceEEEEEEEcCc
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNIKISGY 903 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~---~~~~~G~i~i~g~ 903 (1425)
++++|+++.+. ..++++ +.+++|..++|+|+||||||||++.|+|... ..+..|.+...+.
T Consensus 4 l~~~~~~~~~~--------------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMS--------------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEE--------------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheee--------------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 56777777663 135666 7889999999999999999999999999651 0122343322110
Q ss_pred c-CC-cccccceEEEeecCCCCCCCCC---HHHHHHHHhh-ccC----------CCCCCHHHHHHHHHHHHHHcCCcccc
Q 047682 904 P-KK-QETFARISGYCEQNDIHSPNVT---VYESLLYSAW-LRL----------PPDVDSETRRMFLEEIMELVELNPLR 967 (1425)
Q Consensus 904 ~-~~-~~~~~~~~gyv~Q~~~~~~~lT---v~E~l~~~~~-lr~----------~~~~~~~~~~~~v~~~l~~l~l~~~~ 967 (1425)
- .. ...+....|+..++ .+... .+..+..... .+. ...... .+..+.+.++..++....
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~ 142 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLV 142 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEE
T ss_pred EEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEE
Confidence 0 00 00000001111100 00000 1111111110 000 001111 122344555556654321
Q ss_pred ccccCCCCCCcCCHHHHHH-HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 047682 968 QSLVGLPGVSGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030 (1425)
Q Consensus 968 ~~~~g~~~~~~lSgGqrqR-l~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~t 1030 (1425)
+++. ...+|+||||| +..+++++.+|.++++|||||++|......+++.|.++..+|.|
T Consensus 143 ---v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 143 ---LLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp ---EEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ---EEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 1111 34589999999 89999999999999999999999999999999999998766644
No 195
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.34 E-value=3.4e-14 Score=170.55 Aligned_cols=162 Identities=11% Similarity=0.101 Sum_probs=93.2
Q ss_pred EEEecceeeeecchhhhhccccCCceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 827 LTFEDVVYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
+.++|++..+. ++.+++|+|+.| +|+|+||||||||+++|+|........|.+.+++.+
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~-- 70 (418)
T 2qag_C 12 VGFANLPNQVY-------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK-- 70 (418)
T ss_dssp ---CCCCCCTT-------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------
T ss_pred EEEEecceeEC-------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc--
Confidence 66777766542 346899999998 999999999999999999964311112222222211
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHH
Q 047682 907 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR 986 (1425)
Q Consensus 907 ~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqR 986 (1425)
....+.++|++|++.+.+.+||.|++.+..... .... ...+.+.+ + ..++.+++||
T Consensus 71 -t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~---~~~i~~~i------~--------~~~~~~l~qr 126 (418)
T 2qag_C 71 -TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNC---WQPVIDYI------D--------SKFEDYLNAE 126 (418)
T ss_dssp -CCEEEEEECC------CEEEEEEECC--------------------CHHHHHHH------H--------HHHHHHTTTS
T ss_pred -ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhh---HHHHHHHH------H--------HHHHHHHHHH
Confidence 112345799999988888899999987754321 0110 11111111 1 1366778889
Q ss_pred HHHHHHHhhCCc---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Q 047682 987 LTIAVELVANPS---IIFMDEPT-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1038 (1425)
Q Consensus 987 l~ia~~L~~~p~---illLDEPT-sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1038 (1425)
+.||++++.+|+ +|++|||| +|||+... +.++.+. .+.+||+++|.-
T Consensus 127 ~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~ 177 (418)
T 2qag_C 127 SRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKA 177 (418)
T ss_dssp CC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEEST
T ss_pred HHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEcc
Confidence 999999999999 99999999 69998873 3444554 378888888753
No 196
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.34 E-value=1.1e-12 Score=163.61 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=70.5
Q ss_pred CcC-CHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 977 SGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 977 ~~l-SgGqrqRl~ia~~L~~~p--~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
..| |||||||++||++|+.+| ++|+|||||+|||+.++..|.+.|+++++ |+|||++||+|. +...+|++++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 457 999999999999999999 99999999999999999999999999987 899999999985 556799999997
Q ss_pred CC
Q 047682 1054 RG 1055 (1425)
Q Consensus 1054 ~G 1055 (1425)
++
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 197
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.32 E-value=8.6e-14 Score=176.05 Aligned_cols=159 Identities=13% Similarity=0.171 Sum_probs=103.4
Q ss_pred EEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC------cccccceEEEeecCCCCCCCCCHHHHHHHHhhccC
Q 047682 868 TALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK------QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRL 941 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~ 941 (1425)
+||+|||||||||||++|+|...+ ..+|.|+++|.++. ...+++.+||++|+..+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999997542 14799999997731 13456789999999999999999999976432110
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCC------CCCCCHHHHH
Q 047682 942 PPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP------TSGLDARAAA 1015 (1425)
Q Consensus 942 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEP------TsgLD~~~~~ 1015 (1425)
. .. .++| ++++.++.+...+|+++++||| |+|||+....
T Consensus 127 ~---------------------~~-----------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 G---------------------EG-----------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp C---------------------SS-----------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred C---------------------Cc-----------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 0 00 0111 1112222223458999999999 9999999999
Q ss_pred HHHHHHHHHHhC--CCEEEEEecCcc------HHHHHhc-----CEEEEEeCCcEEEEECC
Q 047682 1016 IVMRTVRNTVDT--GRTVVCTIHQPS------IDIFEAF-----DELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 1016 ~i~~~l~~~~~~--g~tvi~~~H~~~------~~~~~~f-----D~v~~l~~Gg~~~y~G~ 1063 (1425)
.+.+.++++.++ +.++++++|+.. ..+.... ..|+++.++ -.+..|.
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~-Dlv~~g~ 231 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKP-DLVDKGT 231 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECG-GGSSSSS
T ss_pred HHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecch-hhcCccc
Confidence 999999997543 567888999865 2233333 346777764 3344443
No 198
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.30 E-value=3.5e-15 Score=178.10 Aligned_cols=164 Identities=16% Similarity=0.091 Sum_probs=98.0
Q ss_pred eeeceEEEEeC--CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc----cEEEEC----CccCCCCCcc--ceEEEEccC
Q 047682 136 ILKDVNGIVKP--SRLTLLLGPPASGKTTLLLALAGKLDPSLKLS----GRVTYN----GHNMDEFVPQ--RTAAYISQH 203 (1425)
Q Consensus 136 iL~~vs~~i~~--G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~----G~V~~~----G~~~~~~~~~--~~~~yv~Q~ 203 (1425)
+.+.|++.|++ |+.++|+||||||||||+++|+|.++|+ + |++.++ |.+. ..... +.++|++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~-~~~~~~~~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQ-AMQYSDYPQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTT-SSCTTTHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcc-cCChhHHHHHHHHHHH
Confidence 45679999999 9999999999999999999999999987 6 777653 2221 10000 112222221
Q ss_pred CCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc
Q 047682 204 DVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADT 283 (1425)
Q Consensus 204 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 283 (1425)
.. ....|++||+.+. + ....++
T Consensus 233 ~~-~~~~t~~~nl~~~---------------------------~------------------------------~~~~~~ 254 (365)
T 1lw7_A 233 YI-DYAVRHSHKIAFI---------------------------D------------------------------TDFITT 254 (365)
T ss_dssp HH-HHHHHHCSSEEEE---------------------------S------------------------------SCHHHH
T ss_pred HH-HHHHhccCCEEEE---------------------------e------------------------------CCchHH
Confidence 10 0011111111110 0 000001
Q ss_pred cccCcccccCChhhhhhHHHHHHHh-cCCcEeEEec---CC------CCCChHHHHHHHHHHHHHHHhcCCEEEEEEecC
Q 047682 284 MVGDEMLRGISGGQRKRVTTGEMLV-GPALALFMDE---IS------TGLDSSTTFQIVTSLRQIIHILNGTAVISLLQP 353 (1425)
Q Consensus 284 ~vg~~~~~~LSGGqrqRvsia~al~-~~p~illLDE---pt------sgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~ 353 (1425)
....+|+|+++|..+++++. .+|++++||| |+ .++|...+..+.+.|+++.+..+.++++ +.++
T Consensus 255 -----~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ili-lde~ 328 (365)
T 1lw7_A 255 -----QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIE-IESP 328 (365)
T ss_dssp -----HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEE-EECS
T ss_pred -----HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEE-eCCC
Confidence 11236677788888888775 5999999999 65 5899999999999998876544555555 4555
Q ss_pred hhhHHhhcCeEEEEc
Q 047682 354 APETYDLFDDIILIS 368 (1425)
Q Consensus 354 ~~~~~~~~D~vilL~ 368 (1425)
.+..+++|.+.+++
T Consensus 329 -~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 329 -SYLDRYNQVKAVIE 342 (365)
T ss_dssp -SHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHH
Confidence 35556666555443
No 199
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.29 E-value=1.3e-11 Score=135.87 Aligned_cols=153 Identities=20% Similarity=0.182 Sum_probs=98.2
Q ss_pred eeecee-EEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 047682 854 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYES 932 (1425)
Q Consensus 854 iL~~vs-~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~ 932 (1425)
.|+++. +-+++|++++|+||||||||||++.|++ ..+ .+.+ |+..++. .+. +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~-----------------~i~~~~~----~~~-~~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVA-----------------YVDTEGG----FSP-ER 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEE-----------------EEESSCC----CCH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEE-----------------EEECCCC----CCH-HH
Confidence 466665 4799999999999999999999999998 221 1222 3322221 111 11
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH--HHHHHHHHHHHhhC-CcEEEEeCCCCCC
Q 047682 933 LLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 1009 (1425)
Q Consensus 933 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG--qrqRl~ia~~L~~~-p~illLDEPTsgL 1009 (1425)
+.-... . ...+. +++++.+.+ ...|++ +++++..+++++.+ |+++++||||+++
T Consensus 62 ~~~~~~-~--~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQMAE-T--RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHHHH-T--TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHHHHH-h--cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 110000 0 01111 122222211 123344 46788889999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhC-CCEEEEEecCccH------------HHHHhcCEEEEEeCC
Q 047682 1010 DARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPSI------------DIFEAFDELFLMKRG 1055 (1425)
Q Consensus 1010 D~~~--------~~~i~~~l~~~~~~-g~tvi~~~H~~~~------------~~~~~fD~v~~l~~G 1055 (1425)
|... ...+++.|++++++ |+|||+++|.... .+...+|.+++|++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9733 24566668887654 8999999998641 366789999999864
No 200
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.29 E-value=2.1e-13 Score=150.12 Aligned_cols=148 Identities=18% Similarity=0.197 Sum_probs=97.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCH----HHHHHh
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTV----RETLAF 218 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~f 218 (1425)
..++|++++|+||||||||||+++|+|..+|+ ..+|.|.+++.+.... .++.++|++|++..++.+|+ .|++.+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 57899999999999999999999999999863 3589999998776432 23568999997554443333 122111
Q ss_pred hhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhh
Q 047682 219 SARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQR 298 (1425)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 298 (1425)
. |+ +.|-.+
T Consensus 90 ~------------------------------------------------------------------~~-----~yg~~~ 98 (219)
T 1s96_A 90 F------------------------------------------------------------------GN-----YYGTSR 98 (219)
T ss_dssp T------------------------------------------------------------------TE-----EEEEEH
T ss_pred H------------------------------------------------------------------hc-----cCCCCH
Confidence 1 10 111111
Q ss_pred hhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCCeEEEecCh
Q 047682 299 KRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEGQIVFQGPR 378 (1425)
Q Consensus 299 qRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~ 378 (1425)
++ .+.++..+++++|| ||+.++.++.+.+. .+.+|+.++|...++.+ |+ +..| .|+.
T Consensus 99 ~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~ 155 (219)
T 1s96_A 99 EA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDSE 155 (219)
T ss_dssp HH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSCH
T ss_pred HH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCCH
Confidence 11 23344557999999 99999999988765 25566666777666654 43 6777 6788
Q ss_pred hHHHHHHH
Q 047682 379 EHVLEFFK 386 (1425)
Q Consensus 379 ~~~~~~F~ 386 (1425)
+++...+.
T Consensus 156 e~i~~rl~ 163 (219)
T 1s96_A 156 EVIAKRMA 163 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87765543
No 201
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.29 E-value=5.4e-13 Score=160.10 Aligned_cols=150 Identities=12% Similarity=0.067 Sum_probs=86.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCC
Q 047682 132 KKFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMT 211 (1425)
Q Consensus 132 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 211 (1425)
..+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.++|++|++...+.+|
T Consensus 22 ~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Lt 91 (418)
T 2qag_C 22 YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLT 91 (418)
T ss_dssp TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC------CEEEE
T ss_pred CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCCccccee
Confidence 3456999999998 99999999999999999999865311 2222222111 111246899999888888899
Q ss_pred HHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 047682 212 VRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLR 291 (1425)
Q Consensus 212 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 291 (1425)
|.||+.++...... ... ....+++ + .
T Consensus 92 v~Dt~g~~~~~~~~----------------------~~~--------------~~i~~~i-~-----------------~ 117 (418)
T 2qag_C 92 IVDTPGFGDAVDNS----------------------NCW--------------QPVIDYI-D-----------------S 117 (418)
T ss_dssp EEECC---------------------------------C--------------HHHHHHH-H-----------------H
T ss_pred eeechhhhhhccch----------------------hhH--------------HHHHHHH-H-----------------H
Confidence 99998875321100 000 0011111 0 1
Q ss_pred cCChhhhhhHHHHHHHhcCCc---EeEEecCC-CCCChHHHHHHHHHHHHHHHhcCCEEEEEEe
Q 047682 292 GISGGQRKRVTTGEMLVGPAL---ALFMDEIS-TGLDSSTTFQIVTSLRQIIHILNGTAVISLL 351 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~---illLDEpt-sgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~ 351 (1425)
.++.+.++|++|||+++.+|+ ++++|||| +|||+... ++++.+.. +.++|++++
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVin 175 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIA 175 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEEE
Confidence 366788899999999999999 99999999 69998762 44444432 455555443
No 202
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.27 E-value=5.1e-13 Score=157.44 Aligned_cols=59 Identities=10% Similarity=0.073 Sum_probs=43.0
Q ss_pred HHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcCC
Q 047682 302 TTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISEG 370 (1425)
Q Consensus 302 sia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 370 (1425)
+||++|..+|+++++|||| |..+...+ .+.+. .|.++ ++++|..... +.+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~----~~~~~-~G~~v-l~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLA----LTAAE-TGHLV-FGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHH----HHHHH-TTCEE-EEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHH----HHHHh-cCCEE-EEEEccChHH-HHHHHHhhhcCc
Confidence 8999999999999999999 76664433 33333 35664 4455665555 889999988655
No 203
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.27 E-value=9.8e-14 Score=152.83 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=86.2
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH----HHHHHH
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTV----YESLLY 935 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv----~E~l~~ 935 (1425)
-..++|++++|+||||||||||+++|+|..++....|.|.+++.+.... .++.++|++|++..++.+|+ .|++.+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 3578999999999999999999999999654223678999988765432 23457899987654443333 222211
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 047682 936 SAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015 (1425)
Q Consensus 936 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~ 1015 (1425)
.+. . .+.| +++ ..+++..+++++|| ||+.++.
T Consensus 90 ~~~-------------------------------~------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 90 FGN-------------------------------Y------YGTS---REA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp TTE-------------------------------E------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred Hhc-------------------------------c------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 100 0 0112 111 34455668999999 9999999
Q ss_pred HHHHHHHHHHhCCCEEEEEecCcc
Q 047682 1016 IVMRTVRNTVDTGRTVVCTIHQPS 1039 (1425)
Q Consensus 1016 ~i~~~l~~~~~~g~tvi~~~H~~~ 1039 (1425)
.+.+.+. ++.||++++|+++
T Consensus 122 ~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 122 QIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHHCT----TCEEEEEECSSHH
T ss_pred HHHHHcc----CCEEEEEECCCHH
Confidence 9998876 5899999999975
No 204
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.27 E-value=2.2e-13 Score=162.48 Aligned_cols=167 Identities=16% Similarity=0.149 Sum_probs=110.2
Q ss_pred eeceeEEEeCCeE--EEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 047682 855 LNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYES 932 (1425)
Q Consensus 855 L~~vs~~i~~Ge~--~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~ 932 (1425)
|+++|+++++|++ +||+||||||||||+|+|+|..- .|.. +... .....++.++|++|++.+++.+||.|+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~-~~~~--~~~~~~~~i~~v~Q~~~l~~~ltv~D~ 102 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEP-ATHT--QPGVQLQSNTYDLQESNVRLKLTIVST 102 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCc-CCCC--CccceEeeEEEEeecCccccccchhhh
Confidence 9999999999999 99999999999999999999742 1211 1111 111224578999999988889999999
Q ss_pred HHHHhhccCCCCCCHH--------HHHHHHHHHHHHc-CCc----cccccc----cC--CCCCCcCCHHHHHHHHHHHHH
Q 047682 933 LLYSAWLRLPPDVDSE--------TRRMFLEEIMELV-ELN----PLRQSL----VG--LPGVSGLSTEQRKRLTIAVEL 993 (1425)
Q Consensus 933 l~~~~~lr~~~~~~~~--------~~~~~v~~~l~~l-~l~----~~~~~~----~g--~~~~~~lSgGqrqRl~ia~~L 993 (1425)
+.|+.. .+.. ..++..++.++.. ++. ...|.. +. .+...+++-.+ +.|+++|
T Consensus 103 ~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L 173 (427)
T 2qag_B 103 VGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKL 173 (427)
T ss_dssp ECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHT
T ss_pred hhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHH
Confidence 865421 1211 1123344555544 443 112222 11 12224677776 7899999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 047682 994 VANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1037 (1425)
Q Consensus 994 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~ 1037 (1425)
..+++|+++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999999999999986 77779999887754
No 205
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.26 E-value=1.9e-14 Score=155.05 Aligned_cols=169 Identities=12% Similarity=0.067 Sum_probs=107.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhcCCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 226 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 226 (1425)
|++++|+||||||||||+++|++ +. +|.+.++|.++.+. ...++++|.....+..|+++++.+.++.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 72 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLA 72 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999997 33 78999999765432 23467777654455668888887654321000
Q ss_pred CcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC---cccccC--ChhhhhhH
Q 047682 227 SRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGD---EMLRGI--SGGQRKRV 301 (1425)
Q Consensus 227 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~---~~~~~L--SGGqrqRv 301 (1425)
. .. ...+...+. +..+.+ |+|+++|+
T Consensus 73 ~------------~~-------------------------------------~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 73 Q------------ND-------------------------------------VVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp T------------CE-------------------------------------EEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred C------------Cc-------------------------------------EEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 0 00 000000000 001224 89999998
Q ss_pred HHHH------HHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecC-hhhHHhhcCeEEEEcCCeEEE
Q 047682 302 TTGE------MLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQP-APETYDLFDDIILISEGQIVF 374 (1425)
Q Consensus 302 sia~------al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~-~~~~~~~~D~vilL~~G~iv~ 374 (1425)
.++. +++.+++...+|+ +||+..... ++.++.+.. .+.+ ++..+|. ..++.+.+|+|+ ++|+++.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~-ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERY-FYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTS-EEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccE-EEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 8877 8999998888884 899988777 777776532 2344 4445565 678899999998 9999999
Q ss_pred ecChhHH
Q 047682 375 QGPREHV 381 (1425)
Q Consensus 375 ~G~~~~~ 381 (1425)
+|+++-+
T Consensus 176 ~~~~~~~ 182 (189)
T 2bdt_A 176 CMAGDPL 182 (189)
T ss_dssp C------
T ss_pred eecCCch
Confidence 9987654
No 206
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.26 E-value=2.3e-11 Score=128.34 Aligned_cols=89 Identities=18% Similarity=0.283 Sum_probs=68.6
Q ss_pred cccCChhhhhhHHHHHHHh----cCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEE
Q 047682 290 LRGISGGQRKRVTTGEMLV----GPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDII 365 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~----~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 365 (1425)
+..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.+ ++++|+ ++|+. .+.+.+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~iv-ith~~-~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIV-ITLRD-VMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEE-ECSCH-HHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEE-EEecH-HHHHhCCEEE
Confidence 4579999999999999996 56799999999999999999999999998753 345444 55554 5778999998
Q ss_pred EE--cCCeE-EEecChhHHH
Q 047682 366 LI--SEGQI-VFQGPREHVL 382 (1425)
Q Consensus 366 lL--~~G~i-v~~G~~~~~~ 382 (1425)
.+ .+|.. +.....++..
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEEETTEEEEEECCHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHH
Confidence 66 46743 3344444443
No 207
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.23 E-value=1e-12 Score=141.50 Aligned_cols=140 Identities=16% Similarity=0.108 Sum_probs=88.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-ccceEEEEccCCCCCCCCCHHHHHHhhhhh
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARC 222 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 222 (1425)
+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... .++.++|++|+.. +..||.|++.+.+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 679999999999999999999999998 44 799999998753221 1234678887543 467899998775432
Q ss_pred cCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHH
Q 047682 223 QGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVT 302 (1425)
Q Consensus 223 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvs 302 (1425)
...... . ...+.. +..++++.... . +..+..+|+|++||+.
T Consensus 79 ~~~~~~-~---------~~~~~~--------------------------~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~ 119 (191)
T 1zp6_A 79 YAKEGY-F---------VILDGV--------------------------VRPDWLPAFTA--L-ARPLHYIVLRTTAAEA 119 (191)
T ss_dssp HHHTSC-E---------EEECSC--------------------------CCTTTTHHHHT--T-CSCEEEEEEECCHHHH
T ss_pred HhccCC-e---------EEEecc--------------------------CcHHHHHHHHh--c-CCCeEEEEecCCHHHH
Confidence 100000 0 000000 00001110000 0 1112359999999999
Q ss_pred HHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHH
Q 047682 303 TGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQ 337 (1425)
Q Consensus 303 ia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~ 337 (1425)
++|++.++|+++ +|+.....+.+.++.
T Consensus 120 ~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 120 IERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 999999999876 687766655554443
No 208
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.22 E-value=3.2e-13 Score=140.68 Aligned_cols=78 Identities=18% Similarity=0.060 Sum_probs=66.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
..+++++|+.+++|++++|+||||||||||+|+|+|.+ |+ +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 45899999999999999999999999999999999999 77 899999998774211111 2899987777 89999
Q ss_pred HHHHh
Q 047682 214 ETLAF 218 (1425)
Q Consensus 214 E~l~f 218 (1425)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
No 209
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.22 E-value=1.5e-11 Score=135.32 Aligned_cols=77 Identities=14% Similarity=0.037 Sum_probs=57.8
Q ss_pred CChhh--hhhHHHHHHHhcC-CcEeEEecCCCCCChHH--------HHHHHHHHHHHHHhcCCEEEEEEecChh------
Q 047682 293 ISGGQ--RKRVTTGEMLVGP-ALALFMDEISTGLDSST--------TFQIVTSLRQIIHILNGTAVISLLQPAP------ 355 (1425)
Q Consensus 293 LSGGq--rqRvsia~al~~~-p~illLDEptsgLD~~t--------~~~i~~~L~~~~~~~~~t~ii~~~q~~~------ 355 (1425)
.|+++ ++++..+++++.+ |+++++||||+++|... ..++++.|+++++..+.++++ ++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~-~~h~~~~~~~~~ 163 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIV-INQVHFDSRTEM 163 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEE-EECSSSSCTTSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EeeEEEcCCCCc
Confidence 45554 5678888899986 99999999999999743 245667788888766666665 555443
Q ss_pred -------hHHhhcCeEEEEcCC
Q 047682 356 -------ETYDLFDDIILISEG 370 (1425)
Q Consensus 356 -------~~~~~~D~vilL~~G 370 (1425)
.+...+|.|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 467899999999754
No 210
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.21 E-value=1.7e-12 Score=154.61 Aligned_cols=131 Identities=18% Similarity=0.263 Sum_probs=93.9
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESL 933 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l 933 (1425)
+|++++ +++|++++|+||||||||||+++|+|...+. .+|.|.+.|.+... ..++.++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e~-~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEY-VFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCCS-CCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHhh-hhccCceEEEeee------------
Confidence 577776 7899999999999999999999999964311 14777666555431 2344567777741
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 047682 934 LYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013 (1425)
Q Consensus 934 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~ 1013 (1425)
+|+. ...+ +.+|+.+|..+|++|++|||| |..+
T Consensus 191 ---------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 1211 1124 469999999999999999999 7766
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 1014 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 1014 ~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
.. .+++. +..|.+|++|+|..+ ..+.+||++.|.
T Consensus 224 ~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 43 34443 456999999999975 567788887664
No 211
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.21 E-value=1.5e-14 Score=155.85 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=108.6
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPD 944 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~ 944 (1425)
|++++|+||||||||||+++|++.. .|.+.++|.+.... ...|+++|.....+..|+++++.+.+.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-----~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLL-- 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-----CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHh--
Confidence 7899999999999999999999732 35678887653221 1346777765444556788887664321100
Q ss_pred CCHHHHHHHHHHHHHHcCCccccccccCC---CCCCcC--CHHHHHHHHHHH------HHhhCCcEEEEeCCCCCCCHHH
Q 047682 945 VDSETRRMFLEEIMELVELNPLRQSLVGL---PGVSGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARA 1013 (1425)
Q Consensus 945 ~~~~~~~~~v~~~l~~l~l~~~~~~~~g~---~~~~~l--SgGqrqRl~ia~------~L~~~p~illLDEPTsgLD~~~ 1013 (1425)
-+...+.+...+. ...+.+ |+|++|++.++. +++.+|+...+|+ |||+..
T Consensus 72 ----------------~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 72 ----------------AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp ----------------TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred ----------------cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 0000011110000 001124 888888888888 9999999888884 899988
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecC-ccHHHHHhcCEEEEEeCCcEEEEECCCC
Q 047682 1014 AAIVMRTVRNTVDTGRTVVCTIHQ-PSIDIFEAFDELFLMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1014 ~~~i~~~l~~~~~~g~tvi~~~H~-~~~~~~~~fD~v~~l~~Gg~~~y~G~~~ 1065 (1425)
... ++.++++.+.+.+||.++|+ ++ ++.+.+|+|+ + .|++++.|++.
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~-~g~~~~~~~~~ 180 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--T-NPRFIFCMAGD 180 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--H-CGGGSCC----
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--h-CCcEEEeecCC
Confidence 888 88888776567899999998 76 5778899998 5 57888888764
No 212
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.21 E-value=2.7e-13 Score=152.66 Aligned_cols=155 Identities=19% Similarity=0.193 Sum_probs=97.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---cCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhh
Q 047682 146 PSRLTLLLGPPASGKTTLLLALA---GKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARC 222 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 222 (1425)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+... ...+.+.+++|+...++..|+.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 998887 8999888754321 1123455667777778888999999864321
Q ss_pred -cCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHH--HhCCcccc-------cccccCccccc
Q 047682 223 -QGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIK--VLGLDVCA-------DTMVGDEMLRG 292 (1425)
Q Consensus 223 -~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~lgL~~~~-------~t~vg~~~~~~ 292 (1425)
.+.+-..+ -.+. ..+. .+.+.+ ..++-... -..+.++.+..
T Consensus 102 ~~~~~~il~-------------g~~~-~~~~---------------~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~ 152 (246)
T 2bbw_A 102 RRGQHWLLD-------------GFPR-TLGQ---------------AEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152 (246)
T ss_dssp CTTSCEEEE-------------SCCC-SHHH---------------HHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET
T ss_pred cCCCeEEEE-------------CCCC-CHHH---------------HHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcC
Confidence 00000000 0000 0000 000000 00000000 00111233445
Q ss_pred CChhhhhhHHHHHHH-hcCCcEeEEe----cCCCCCChHHHHHHHHHHHHHHH
Q 047682 293 ISGGQRKRVTTGEML-VGPALALFMD----EISTGLDSSTTFQIVTSLRQIIH 340 (1425)
Q Consensus 293 LSGGqrqRvsia~al-~~~p~illLD----EptsgLD~~t~~~i~~~L~~~~~ 340 (1425)
+|| |+ +++ +.+|++++|| |||+|||..+...+.+.++++.+
T Consensus 153 lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 153 PSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp TTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred CCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 998 66 677 9999999999 99999999999999999988754
No 213
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.21 E-value=2.3e-13 Score=143.57 Aligned_cols=138 Identities=18% Similarity=0.158 Sum_probs=84.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC------cc-ceEE----EEccCCCCCCCCCHHHHH
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV------PQ-RTAA----YISQHDVHIGEMTVRETL 216 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~-~~~~----yv~Q~d~~~~~lTV~E~l 216 (1425)
++++|+|+||||||||+++|+|.+++.....|.|.++|+++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999999875333699999998855432 12 2455 788865543 000
Q ss_pred HhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChh
Q 047682 217 AFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGG 296 (1425)
Q Consensus 217 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 296 (1425)
+ . .+.. ...+..++. .|+ ..||.+++ +||||
T Consensus 77 -------~--~----------~~~~------------------------a~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--S----------EEEG------------------------NDLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--C----------HHHH------------------------TCHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--C----------hhhh------------------------hCHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 0 0000 001223333 133 57899987 59999
Q ss_pred hhhhHHHHHHHhcCCcEe-------EEecCCCC---CChHHHHHHHHHHHHHHH
Q 047682 297 QRKRVTTGEMLVGPALAL-------FMDEISTG---LDSSTTFQIVTSLRQIIH 340 (1425)
Q Consensus 297 qrqRvsia~al~~~p~il-------lLDEptsg---LD~~t~~~i~~~L~~~~~ 340 (1425)
||||++|||+++++|++. .=|.|..+ +|......+.+++.+...
T Consensus 108 q~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~ 161 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLR 161 (171)
T ss_dssp CCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHT
T ss_pred CCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHh
Confidence 999999999999999874 22444322 344556677777766544
No 214
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.19 E-value=4.2e-12 Score=150.67 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=52.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-ccceEEEEc-cC
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-PQRTAAYIS-QH 203 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~-Q~ 203 (1425)
+++++|+.+++|++++|+||||||||||+++|+|.++|+ +|.|+++|..--... .++.++|++ |+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~ 230 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSE 230 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC--
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCc
Confidence 349999999999999999999999999999999999998 999999985311111 345688888 54
No 215
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.19 E-value=1e-13 Score=149.44 Aligned_cols=142 Identities=14% Similarity=0.041 Sum_probs=89.6
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHHHHHHhhcc
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE-TFARISGYCEQNDIHSPNVTVYESLLYSAWLR 940 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr 940 (1425)
+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ...+..+|++|+.. +..|+.|++.+.+...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 67999999999999999999999999743 47789998653221 11234577777543 4678899887654221
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 047682 941 LPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020 (1425)
Q Consensus 941 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~ 1020 (1425)
...... ..++.+++..++...... +. .+..+|+|++||+.++|++.++|+++ +|+.....+.+.
T Consensus 80 ~~~~~~-----~~~~~~~~~~~l~~~~~~--~~-~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 80 AKEGYF-----VILDGVVRPDWLPAFTAL--AR-PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp HHTSCE-----EEECSCCCTTTTHHHHTT--CS-CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred hccCCe-----EEEeccCcHHHHHHHHhc--CC-CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 000000 000111111111111100 11 12459999999999999999999887 688777777776
Q ss_pred HHHHH
Q 047682 1021 VRNTV 1025 (1425)
Q Consensus 1021 l~~~~ 1025 (1425)
++.+.
T Consensus 144 ~~~l~ 148 (191)
T 1zp6_A 144 FADLG 148 (191)
T ss_dssp TTCCG
T ss_pred HhccC
Confidence 65543
No 216
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.18 E-value=4.3e-11 Score=142.85 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=68.1
Q ss_pred CCcCCHHHHHHH------HHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCE
Q 047682 976 VSGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1048 (1425)
Q Consensus 976 ~~~lSgGqrqRl------~ia~~L~~~-p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~ 1048 (1425)
+..||||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. .+.+||+|||+|. +...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCE
Confidence 457999999988 567888999 99999999999999999999999999874 3579999999985 5688999
Q ss_pred EEEEeCCc
Q 047682 1049 LFLMKRGG 1056 (1425)
Q Consensus 1049 v~~l~~Gg 1056 (1425)
+++|++.|
T Consensus 355 ~~~l~k~~ 362 (371)
T 3auy_A 355 IINVKKDG 362 (371)
T ss_dssp EEEEEESS
T ss_pred EEEEEecC
Confidence 99998543
No 217
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.18 E-value=4.8e-13 Score=146.23 Aligned_cols=67 Identities=12% Similarity=-0.016 Sum_probs=52.8
Q ss_pred HHHHHhCCcccccccccCcccccCChhhhhh-HHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHH
Q 047682 270 YVIKVLGLDVCADTMVGDEMLRGISGGQRKR-VTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIH 340 (1425)
Q Consensus 270 ~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR-vsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~ 340 (1425)
..++..+++.. .++++ ...+|+||||| +..+++++.+|+.+++|||||++|.....++++.|.++..
T Consensus 131 ~~~~~~~~~~~---~v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 131 EWAVDSNIAVL---VLLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHTTCCEE---EEEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHcCCCeE---EEEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 34455666532 22322 23499999999 8999999999999999999999999999999999988754
No 218
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.18 E-value=3e-12 Score=151.93 Aligned_cols=138 Identities=17% Similarity=0.118 Sum_probs=99.2
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC-cccccceEEEee-cCCCCCCCCCHHH
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK-QETFARISGYCE-QNDIHSPNVTVYE 931 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~-~~~~~~~~gyv~-Q~~~~~~~lTv~E 931 (1425)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|...- ....++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 45999999999999999999999999999999997653 3689999985321 122456678887 54321
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 047682 932 SLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011 (1425)
Q Consensus 932 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~ 1011 (1425)
+++++...|-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012223456666777777899999999986
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEeCCc
Q 047682 1012 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1056 (1425)
Q Consensus 1012 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg 1056 (1425)
..+.+.|+.+.....|++.++|..+ ....+||+..|..++
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 2355667666544458899999975 567889999998753
No 219
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.13 E-value=1.2e-14 Score=169.88 Aligned_cols=163 Identities=15% Similarity=0.130 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCChhhHHhhhcCCCCC------ceEEEEEEEcCccCCcc------------------cccceEEEe---e
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGRKTG------GYITGNIKISGYPKKQE------------------TFARISGYC---E 918 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~gyv---~ 918 (1425)
++++|+|+||||||||||.|.|...+ ....|+|.+||.+.... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999986421 01357788888764321 223345556 5
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCC--CHH-HHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhh
Q 047682 919 QNDIHSPNVTVYESLLYSAWLRLPPDV--DSE-TRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 995 (1425)
Q Consensus 919 Q~~~~~~~lTv~E~l~~~~~lr~~~~~--~~~-~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~ 995 (1425)
|+..+.+..++.|+..++......... ..+ ..+..++.++..+++.+..+.. .++|+|||||+..++.++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 665555666777765432000000000 000 0000111122233333333332 2589999999999899999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcC
Q 047682 996 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1047 (1425)
Q Consensus 996 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD 1047 (1425)
+|+++ ||| ..+.+.|+++. .+.||++++|.+. +.-..+|
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 99987 999 67888888875 5899999999864 3333443
No 220
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.13 E-value=6.1e-12 Score=150.12 Aligned_cols=164 Identities=14% Similarity=0.072 Sum_probs=99.2
Q ss_pred cceeeeceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCC
Q 047682 133 KFTILKDVNGIVKPSRL--TLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEM 210 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 210 (1425)
..+ |+|+|+.+++|++ ++|+||||||||||+|+|+|..- .|..... ......++.++|++|++.+++.+
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~---~~~~~~~~~i~~v~Q~~~l~~~l 97 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATH---TQPGVQLQSNTYDLQESNVRLKL 97 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------------CCSSCEEEEEEEEEEC--CEEEE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCC---CCccceEeeEEEEeecCcccccc
Confidence 345 9999999999999 99999999999999999999841 2321110 00111235799999998888899
Q ss_pred CHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHh-CCc----ccccccc
Q 047682 211 TVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVL-GLD----VCADTMV 285 (1425)
Q Consensus 211 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~----~~~~t~v 285 (1425)
||.||+.|+..... +.+.. .+. .......+..|... ++. ...|+.|
T Consensus 98 tv~D~~~~g~~~~~---------~~~~~-------------~i~-------~~i~~q~~~~L~e~~~i~r~l~~~~d~rV 148 (427)
T 2qag_B 98 TIVSTVGFGDQINK---------EDSYK-------------PIV-------EFIDAQFEAYLQEELKIRRVLHTYHDSRI 148 (427)
T ss_dssp EEEEEECCCC-CCH---------HHHSH-------------HHH-------HHHHHHHHHHHHHC--CCCCCCCSCC--C
T ss_pred chhhhhhhhhcccc---------chhhh-------------HHH-------HHHHHHHHHHHHHHHhhhhhhcccccccc
Confidence 99999987632110 00000 000 01112233344443 443 1123221
Q ss_pred ----c--CcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHH
Q 047682 286 ----G--DEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQ 337 (1425)
Q Consensus 286 ----g--~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~ 337 (1425)
. ....++|+-.+ +.++++|..+++++++|||+..|.......+.+.+++
T Consensus 149 h~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 149 HVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp CEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 0 01113566665 7899999999999999999999999888888888876
No 221
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.12 E-value=3.7e-11 Score=134.37 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=40.1
Q ss_pred cCCcEeEEecCCCCCChH-------H-----HHHHHHHHHHHHHhcCCEEEEEEecChhhHH------------------
Q 047682 309 GPALALFMDEISTGLDSS-------T-----TFQIVTSLRQIIHILNGTAVISLLQPAPETY------------------ 358 (1425)
Q Consensus 309 ~~p~illLDEptsgLD~~-------t-----~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~------------------ 358 (1425)
.+|+++++|||++.+|+. + ..++++.|+++++..+.++++ ++|...+..
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~-~~h~~~~~~~~~~~~~~~~~~~g~~~~ 196 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVI-TNQVVAQVDGAAMFAADPKKPIGGNII 196 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EC-------------------------
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEE-EeeeeecCCCccccCCCcccCCccChh
Confidence 589999999999999975 3 345677777777766666555 566544432
Q ss_pred -hhcCeEEEEcCC
Q 047682 359 -DLFDDIILISEG 370 (1425)
Q Consensus 359 -~~~D~vilL~~G 370 (1425)
.++|.+++|+.|
T Consensus 197 ~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 197 AHASTTRLYLRKG 209 (243)
T ss_dssp CCTTCEEEEEEEC
T ss_pred hhcCcEEEEEEEc
Confidence 279999999865
No 222
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.12 E-value=2.8e-11 Score=135.40 Aligned_cols=152 Identities=18% Similarity=0.230 Sum_probs=84.7
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcCC--CCC---ceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTG---GYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLL 934 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 934 (1425)
+-+++|++++|+||||||||||++.|++. ... +...|.+.+++... ....+-..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~---------------------~~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT---------------------FRPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC---------------------CCHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC---------------------cCHHHHHH
Confidence 56899999999999999999999999982 211 11235566655321 01111111
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHH-HHHHHHHh--hCCcEEEEeCCCCCCCH
Q 047682 935 YSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR-LTIAVELV--ANPSIIFMDEPTSGLDA 1011 (1425)
Q Consensus 935 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqR-l~ia~~L~--~~p~illLDEPTsgLD~ 1011 (1425)
....+. ... +++++.+.+ ....+..+... +.-+.+++ .+|+++++||||+.+|+
T Consensus 78 ~~~~~g----~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERYG----LSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHTT----CCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHcC----CCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 111111 111 112221110 01245554332 33334444 47999999999999997
Q ss_pred H-------H-----HHHHHHHHHHHHhC-CCEEEEEecCccHH------------------HHHhcCEEEEEeCC
Q 047682 1012 R-------A-----AAIVMRTVRNTVDT-GRTVVCTIHQPSID------------------IFEAFDELFLMKRG 1055 (1425)
Q Consensus 1012 ~-------~-----~~~i~~~l~~~~~~-g~tvi~~~H~~~~~------------------~~~~fD~v~~l~~G 1055 (1425)
. + ...+++.|++++++ |+|||+++|..... +...+|.+++|+++
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 34566666666644 99999999965421 11168999999864
No 223
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.11 E-value=8e-13 Score=157.34 Aligned_cols=168 Identities=17% Similarity=0.250 Sum_probs=100.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRET 215 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 215 (1425)
+|++++ +++|++++|+||||||||||+++|+|.++++ -+|+|.+.|.++. ...+..++||+|...-....+.+..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~~g~~~~~~~~~ 201 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQREVGEDTKSFADA 201 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTBSCSHHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeeecCCCHHHHHHH
Confidence 677776 7999999999999999999999999998763 1699988776654 3345678999993211111122333
Q ss_pred HHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHH---HHHHhhh--------hhhhhHHHHHHHHHh---------
Q 047682 216 LAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVF---MKALATE--------GQEASVVTDYVIKVL--------- 275 (1425)
Q Consensus 216 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~~~~~l~~l--------- 275 (1425)
|.-+.+.. + . .=.+.|.. |.+.+ .+++... ........+.++...
T Consensus 202 l~~~L~~~-p-d-~illdE~~------------d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~ 266 (372)
T 2ewv_A 202 LRAALRED-P-D-VIFVGEMR------------DLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVR 266 (372)
T ss_dssp HHHHTTSC-C-S-EEEESCCC------------SHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHH
T ss_pred HHHHhhhC-c-C-EEEECCCC------------CHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHH
Confidence 33322221 1 0 00000000 11111 1111000 000111222222211
Q ss_pred -CCcccccccccCcccccCChhhhhhHHHHHHHhcCCcE--eEEecCCCCCChH
Q 047682 276 -GLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALA--LFMDEISTGLDSS 326 (1425)
Q Consensus 276 -gL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~i--llLDEptsgLD~~ 326 (1425)
-|....++.|+.+.++ +||| ||++++|+++.+|++ +++||.|+.||+.
T Consensus 267 ~~l~~~l~~vv~qrl~~-~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 317 (372)
T 2ewv_A 267 IVLSFILQGIISQRLLP-KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSL 317 (372)
T ss_dssp HHHHHSCCEEEEEEEEE-CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHH
T ss_pred HHHHHhhhEEEEEEeEe-cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHH
Confidence 1345567888876665 7888 889999999999999 9999999999865
No 224
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.11 E-value=4.4e-12 Score=152.91 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=69.2
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC------C---ccceEEEEccCCCCC
Q 047682 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF------V---PQRTAAYISQHDVHI 207 (1425)
Q Consensus 137 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~------~---~~~~~~yv~Q~d~~~ 207 (1425)
-+++|+.+++|++++|+||||||||||++.|+|++.+. +|+|.++|.+.... . .++.++|++|+....
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999999887 89999987665331 1 135689999988778
Q ss_pred CCCCHHHHHHhhh
Q 047682 208 GEMTVRETLAFSA 220 (1425)
Q Consensus 208 ~~lTV~E~l~f~~ 220 (1425)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999999864
No 225
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.11 E-value=1e-11 Score=145.31 Aligned_cols=122 Identities=18% Similarity=0.099 Sum_probs=80.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccEEEEC-CccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLD-PSLKLSGRVTYN-GHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~~-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
-+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHH
Confidence 35666654 4899999999999999999999999998 87 9999987 765432 2346799999998888888998
Q ss_pred HHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 047682 214 ETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293 (1425)
Q Consensus 214 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 293 (1425)
|+ +. .+. ... +.....+++++.+|+....|... .++
T Consensus 280 e~---~l--~~l----------~~~------------------------e~~~~~~e~l~~~gl~~f~~~~~-----~~l 315 (358)
T 2rcn_A 280 EF---GL--WHL----------EPE------------------------QITQGFVEFHDYLGHCKYRDCKH-----DAD 315 (358)
T ss_dssp TC---CC--CCC----------CHH------------------------HHHHTSGGGGGGTTCSSSTTCCS-----SSC
T ss_pred Hh---hh--cCC----------CHH------------------------HHHHHHHHHHHHcCCchhcCCCc-----ccC
Confidence 83 21 000 000 01122345667788876666554 359
Q ss_pred ChhhhhhHHHHHHH
Q 047682 294 SGGQRKRVTTGEML 307 (1425)
Q Consensus 294 SGGqrqRvsia~al 307 (1425)
| ||+||++||+++
T Consensus 316 S-G~~~r~ala~gl 328 (358)
T 2rcn_A 316 P-GCAIREAVENGA 328 (358)
T ss_dssp T-TCHHHHHHHHTS
T ss_pred C-HHHHHHHHHhcC
Confidence 9 999999999864
No 226
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.10 E-value=2.6e-13 Score=161.91 Aligned_cols=162 Identities=11% Similarity=0.070 Sum_probs=94.9
Q ss_pred eeceeEEEeC--CeEEEEEcCCCCChhhHHhhhcCCCCCceEE----EEEEEc----CccCC--cccccceEEEeecCCC
Q 047682 855 LNGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIT----GNIKIS----GYPKK--QETFARISGYCEQNDI 922 (1425)
Q Consensus 855 L~~vs~~i~~--Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~----G~i~i~----g~~~~--~~~~~~~~gyv~Q~~~ 922 (1425)
.+.|++.|++ |++++|+||||||||||+++|+|...+ .. |++.++ |.+.. ...+ +.++|++|+..
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHH
Confidence 4578899999 999999999999999999999997542 34 444442 11110 0000 11222222110
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHh-hCCcEEE
Q 047682 923 HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPSIIF 1001 (1425)
Q Consensus 923 ~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~-~~p~ill 1001 (1425)
.+ ..|+.||+.+ ++ .+..+.. ...+|+|++||..+++++. .+|++++
T Consensus 235 ~~-~~t~~~nl~~-------------------------~~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lll 282 (365)
T 1lw7_A 235 DY-AVRHSHKIAF-------------------------ID-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTI 282 (365)
T ss_dssp HH-HHHHCSSEEE-------------------------ES-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEE
T ss_pred HH-HHhccCCEEE-------------------------Ee-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEE
Confidence 00 0011111100 00 0000110 1235677788888888775 5999999
Q ss_pred EeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 1002 MDE---PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 1002 LDE---PT------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
||| |+ +++|...+..+.+.|+++.+ .|.+|++++|. + +....+|++.+++
T Consensus 283 LdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 283 LLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred ECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 999 65 68999999999999988764 38899999875 3 3455666665554
No 227
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.10 E-value=1.7e-13 Score=154.17 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=95.4
Q ss_pred CCeEEEEEcCCCCChhhHHhhhc---CCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhcc
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLR 940 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr 940 (1425)
++++++|+||||||||||+++|+ |... +..|++.++|.+... ...+.+++++|+..+.+..|+.|++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 8654 345777776654221 12233455677777788889999997643100
Q ss_pred CC-----CCCCHHHHHHHHHHHHH--HcC------------CccccccccCCCCCCcCCHHHHHHHHHHHHH-hhCCcEE
Q 047682 941 LP-----PDVDSETRRMFLEEIME--LVE------------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL-VANPSII 1000 (1425)
Q Consensus 941 ~~-----~~~~~~~~~~~v~~~l~--~l~------------l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L-~~~p~il 1000 (1425)
.. ....... ..++.+.+ .++ +....+.. +..||| |+ ++| +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCccc
Confidence 00 0111111 11222221 112 11222222 335888 55 677 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHhC
Q 047682 1001 FMD----EPTSGLDARAAAIVMRTVRNTVDT 1027 (1425)
Q Consensus 1001 lLD----EPTsgLD~~~~~~i~~~l~~~~~~ 1027 (1425)
+|| |||+|||..+...+.+.++++.++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 999 999999999999999999988654
No 228
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.10 E-value=2.7e-11 Score=141.78 Aligned_cols=138 Identities=16% Similarity=0.110 Sum_probs=93.0
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEc-CccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 047682 856 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKIS-GYPKKQETFARISGYCEQNDIHSPNVTVYESLL 934 (1425)
Q Consensus 856 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~-g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 934 (1425)
++++.. .+|++++|+||||||||||+|+|+|.... ...|+|.++ |.... ....+.+++++|+..++++.|++|+.
T Consensus 207 ~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~- 282 (358)
T 2rcn_A 207 KPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFG- 282 (358)
T ss_dssp HHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTCC-
T ss_pred HHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhh-
Confidence 344443 37999999999999999999999996540 246888876 65432 23456789999998888888998841
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 047682 935 YSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1014 (1425)
Q Consensus 935 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~ 1014 (1425)
+ ...+.++..+.+.++++.+++.+..+... .++| ||+||++||+++ ++..-.
T Consensus 283 ----l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl---------------i~~~R~ 334 (358)
T 2rcn_A 283 ----L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA---------------IAETRF 334 (358)
T ss_dssp ----C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS---------------SCHHHH
T ss_pred ----h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC---------------CCHHHH
Confidence 1 13455566667788899999988777663 4699 999999999864 344444
Q ss_pred HHHHHHHHHHH
Q 047682 1015 AIVMRTVRNTV 1025 (1425)
Q Consensus 1015 ~~i~~~l~~~~ 1025 (1425)
....++++++.
T Consensus 335 ~~y~~l~~e~~ 345 (358)
T 2rcn_A 335 ENYHRILESMA 345 (358)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 55555666654
No 229
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.09 E-value=1.5e-11 Score=141.01 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=84.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhcC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQG 224 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 224 (1425)
+++.+++|.||+|||||||.+.|++.+.+ .| . .++.+.+|+|++.+++ .++++++.++....+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~------~~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G------GEKSIGYASIDDFYLT-HEDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G------GGSCEEEEEGGGGBCC-HHHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C------CCceEEEeccccccCC-hHHHHHHhccccccc
Confidence 36789999999999999999999999865 23 1 0234666699887775 489999987631100
Q ss_pred CCCcchhhhHhhHHhhhcCCCCCC-ChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc----cccccccCcccccCChhhhh
Q 047682 225 VGSRYDMLVELSRREKDANIKPDP-DIDVFMKALATEGQEASVVTDYVIKVLGLDV----CADTMVGDEMLRGISGGQRK 299 (1425)
Q Consensus 225 ~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~~t~vg~~~~~~LSGGqrq 299 (1425)
.-.. .+ .|+. |.+ .....++.+.-.. .....+. .+...+||||+|
T Consensus 92 l~~~-------------~g-~p~a~d~~---------------~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~ 141 (290)
T 1odf_A 92 LLQG-------------RG-LPGTHDMK---------------LLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGD 141 (290)
T ss_dssp GGSS-------------SC-STTSBCHH---------------HHHHHHHHHTC------CCEEEEC-CEETTHHHHTCE
T ss_pred hhhh-------------cc-CcchhHHH---------------HHHHHHHHhhccCccccCcceeec-cCccccCCcccc
Confidence 0000 00 0111 111 1223444443220 0111122 233579999999
Q ss_pred hHHHH--HHHhcCCcEeEEecCCCCCChHH
Q 047682 300 RVTTG--EMLVGPALALFMDEISTGLDSST 327 (1425)
Q Consensus 300 Rvsia--~al~~~p~illLDEptsgLD~~t 327 (1425)
|+.+| +++ +|+|+|+||+++++|+..
T Consensus 142 R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 142 RCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp ECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccccceEc--CCCEEEEeCccccCCccc
Confidence 99997 555 999999999999999864
No 230
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.07 E-value=2.1e-13 Score=159.30 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=94.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC--------CCCCCcccEEEECCccCCCCCc------------------cceEEEE
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKL--------DPSLKLSGRVTYNGHNMDEFVP------------------QRTAAYI 200 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~--------~~~~~~~G~V~~~G~~~~~~~~------------------~~~~~yv 200 (1425)
=++++|+|+||||||||||.|+|.. .++ .|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l 80 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHH
Confidence 3689999999999999999999986 455 8999999988754321 1234455
Q ss_pred ---ccCCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHH-hhhhhhhhHHHHHHHHHhC
Q 047682 201 ---SQHDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKAL-ATEGQEASVVTDYVIKVLG 276 (1425)
Q Consensus 201 ---~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lg 276 (1425)
+|+....+..||.||..++... .+.+.. ..........++.++..++
T Consensus 81 ~~~~q~~~~~~~~~v~E~~~l~~p~-----------------------------~~~~~~~~~~~~~~~~~l~~~l~~vd 131 (318)
T 1nij_A 81 LDNLDKGNIQFDRLVIECTGMADPG-----------------------------PIIQTFFSHEVLCQRYLLDGVIALVD 131 (318)
T ss_dssp HHHHHHTSCCCSEEEEEEETTCCHH-----------------------------HHHHHHHHSHHHHHHEEEEEEEEEEE
T ss_pred HhHHhcCCCCCCEEEEeCCCCCCHH-----------------------------HHHHHHhcCccccCeEEECCEEEEEE
Confidence 4544444555666655443110 000000 0000000000111122233
Q ss_pred CcccccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhh
Q 047682 277 LDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPE 356 (1425)
Q Consensus 277 L~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~ 356 (1425)
+.+..+.. ..+|||||||+..+++++.+|+++ ||| ..+.+.++++. . +++|+.++|...+
T Consensus 132 ~~~~~~~~------~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~-~~~ii~~sh~~~~ 191 (318)
T 1nij_A 132 AVHADEQM------NQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--A-RAPVYTVTHGDID 191 (318)
T ss_dssp TTTHHHHH------HHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--S-SSCEEECCSSCCC
T ss_pred HHHHHHHH------hhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--C-CCeEEEecccCCC
Confidence 33322222 148999999998888888888877 888 66777777763 2 3444445565444
Q ss_pred HHhhcC
Q 047682 357 TYDLFD 362 (1425)
Q Consensus 357 ~~~~~D 362 (1425)
...++|
T Consensus 192 ~~~l~~ 197 (318)
T 1nij_A 192 LGLLFN 197 (318)
T ss_dssp GGGGSC
T ss_pred HHHHhC
Confidence 444443
No 231
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.07 E-value=1.6e-10 Score=140.79 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=69.2
Q ss_pred CcCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEE
Q 047682 977 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1052 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~----~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l 1052 (1425)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+.|.++|+|+|++ +..+.+|+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 469999999999999999 58999999999999999999999999999865688999999996 467889999999
Q ss_pred eC
Q 047682 1053 KR 1054 (1425)
Q Consensus 1053 ~~ 1054 (1425)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.04 E-value=2.3e-11 Score=141.65 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=62.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---------cceEEEEccCCCCCCCCCHHH
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---------QRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
.++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+...... +..+.+++|+....|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 3689999999999999999999999999887 8999999988654321 123569999988899999999
Q ss_pred HHHhhh
Q 047682 215 TLAFSA 220 (1425)
Q Consensus 215 ~l~f~~ 220 (1425)
++.++.
T Consensus 203 ~l~~~~ 208 (328)
T 3e70_C 203 AIQHAK 208 (328)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 233
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.04 E-value=1e-10 Score=120.78 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=37.2
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCcc
Q 047682 994 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQPS 1039 (1425)
Q Consensus 994 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~t-vi~~~H~~~ 1039 (1425)
+.+|++|++|||++ +|...+..+.+.++++.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 46799999999998 5555588899999988877888 889999653
No 234
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.04 E-value=6.9e-12 Score=150.43 Aligned_cols=170 Identities=15% Similarity=0.131 Sum_probs=97.2
Q ss_pred eeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 047682 855 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLL 934 (1425)
Q Consensus 855 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 934 (1425)
-+++++++++|+.++|+|+|||||||||++|+|... .+.+++.. +....+|++.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEeccc
Confidence 378999999999999999999999999999999642 23333321 12234566665541 1111111110
Q ss_pred HHhhccCCCCCCHHHHH--HHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 047682 935 YSAWLRLPPDVDSETRR--MFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012 (1425)
Q Consensus 935 ~~~~lr~~~~~~~~~~~--~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~ 1012 (1425)
+...............+ +.++.++..+++. ......+|+|++||+.+|++|+.+|.||++ |++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 00000000011111100 0011122222222 112356999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHH-HhCCCEEEEEecCccHHHHHhcCEE
Q 047682 1013 AAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDEL 1049 (1425)
Q Consensus 1013 ~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~~~~~fD~v 1049 (1425)
.+ ..++.+++. .+.|.+++.+|..-...+.++++.+
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 77 444444444 4457776655543233466666554
No 235
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.03 E-value=2.2e-11 Score=146.90 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=100.2
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc-------cc--ccceEEEeecCCCCCCC
Q 047682 856 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-------ET--FARISGYCEQNDIHSPN 926 (1425)
Q Consensus 856 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~--~~~~~gyv~Q~~~~~~~ 926 (1425)
+++|+.+++|++++|+|+||||||||+++|+|.... ..|+|.++|.+... .. .++.++|++|+....+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 578999999999999999999999999999996432 24788887665422 11 24568999999888888
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHh-hCC-cEEEEeC
Q 047682 927 VTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANP-SIIFMDE 1004 (1425)
Q Consensus 927 lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~-~~p-~illLDE 1004 (1425)
.|+++++.+...-. .+. -+++..|+.+... .+-..-+|++.+++++. ..| .+||...
T Consensus 362 ~tV~e~l~~a~~~~--~Dv----------VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 362 SVIFDAIQAAKARN--IDV----------LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHHHTT--CSE----------EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHHhcC--CCE----------EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 99999998764211 000 0112222211111 12223457888888664 457 3565555
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q 047682 1005 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQ 1037 (1425)
Q Consensus 1005 PTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~ 1037 (1425)
||+|.|.. +.++.+.+ .|.|.|++||-
T Consensus 421 attGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 421 ASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp GGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred CcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 89886554 22333332 38899999993
No 236
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.02 E-value=1.9e-11 Score=146.71 Aligned_cols=170 Identities=14% Similarity=0.128 Sum_probs=101.6
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHH
Q 047682 137 LKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETL 216 (1425)
Q Consensus 137 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 216 (1425)
-+++|+++++|+.++|+|+|||||||||++|+|..+ .+.+.+.+... ..++++.+++. ..+++.|+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~--p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLS--PNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSC--CEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceec--ceeeEEEecCc--ceEEEEecc
Confidence 479999999999999999999999999999999843 23444443322 34666766541 111222211
Q ss_pred Hh---hhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 047682 217 AF---SARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGI 293 (1425)
Q Consensus 217 ~f---~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L 293 (1425)
-+ +....+.+. .+.+. ..+++.++..+++. ++....+
T Consensus 214 Gli~~a~~~~~L~~------------------------~fl~~--------~era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------------------------EFLRH--------IARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCH------------------------HHHHH--------HTSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhH------------------------HHHHH--------HHHHHhhhEEeCCc--------cCCHHHH
Confidence 11 000000000 00000 00011122223332 2334569
Q ss_pred ChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 294 SGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 294 SGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
|+||+||+.+|++|...|.++++ |++|...+ ..++.+++..+..+.+++.+..+....+.++++.+
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999999999999999999999 99999877 55555555544444566655555555566665544
No 237
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.01 E-value=1.2e-11 Score=128.69 Aligned_cols=78 Identities=23% Similarity=0.115 Sum_probs=64.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
+.+++++|+++++|++++|+||||||||||+++|+|.. + .+|+|.++|.+.......+ .|++|+..++ .+||.|
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHH
Confidence 45899999999999999999999999999999999965 3 3689999998764321111 2789988788 899999
Q ss_pred HHHH
Q 047682 932 SLLY 935 (1425)
Q Consensus 932 ~l~~ 935 (1425)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
No 238
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.00 E-value=2.1e-12 Score=136.34 Aligned_cols=139 Identities=17% Similarity=0.214 Sum_probs=83.9
Q ss_pred eEEEEEcCCCCChhhHHhhhcCCCCC-ceEEEEEEEcCccCC------ccccc-ceEE----EeecCCCCCCCCCHHHHH
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNIKISGYPKK------QETFA-RISG----YCEQNDIHSPNVTVYESL 933 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~~~~-~~~~G~i~i~g~~~~------~~~~~-~~~g----yv~Q~~~~~~~lTv~E~l 933 (1425)
++++|+|+||||||||+++|+|...+ +...|.|.++|.++. ...++ +.+| +++|+..++ +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i---- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----I---- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----E----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----E----
Confidence 58999999999999999999996432 233699999998732 12333 3456 788876554 0
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHH-cCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEE-------EEeCC
Q 047682 934 LYSAWLRLPPDVDSETRRMFLEEIMEL-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII-------FMDEP 1005 (1425)
Q Consensus 934 ~~~~~lr~~~~~~~~~~~~~v~~~l~~-l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~il-------lLDEP 1005 (1425)
+. .+.+ ....++++++. +. -.|+.++. +||||||||++|||+++.+|++. .-|.|
T Consensus 75 ------~~---~~~~-~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 75 ------RR---VSEE-EGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp ------EE---CCHH-HHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred ------ec---CChh-hhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 10 0111 11124555554 43 24666653 59999999999999999999873 23554
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCCC
Q 047682 1006 TSG---LDARAAAIVMRTVRNTVDTGR 1029 (1425)
Q Consensus 1006 Tsg---LD~~~~~~i~~~l~~~~~~g~ 1029 (1425)
..+ +|......+.+.+.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 334445666777766555543
No 239
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.00 E-value=3.8e-12 Score=149.51 Aligned_cols=181 Identities=13% Similarity=0.061 Sum_probs=109.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC-------CccceEEEEccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF-------VPQRTAAYISQHDVH 206 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~ 206 (1425)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.|+ +|+|.+.|.+.... ..++.++|++|++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 35899999999999999999999999999999999999887 89999998876432 124678999998776
Q ss_pred CCCC---------C---HHHHHHhh-h---h-----hcCCCCcchhhhHhhHHhhhcCC---CCCC-ChHHHHHHHhhhh
Q 047682 207 IGEM---------T---VRETLAFS-A---R-----CQGVGSRYDMLVELSRREKDANI---KPDP-DIDVFMKALATEG 261 (1425)
Q Consensus 207 ~~~l---------T---V~E~l~f~-~---~-----~~~~~~~~~~~~~~~~~e~~~~~---~~~~-~~~~~~~~~~~~~ 261 (1425)
+... | ++|.+... . . .-|.......+ +..++. .-++ ..+.. +.
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v------~~~~d~vl~v~d~~~~~~~-~~----- 186 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAV------ADLTDFFLVLMLPGAGDEL-QG----- 186 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH------HTTSSEEEEEECSCC------------
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhH------HhhCCEEEEEEcCCCcccH-HH-----
Confidence 6532 2 33333110 0 0 00111100000 001100 0000 00000 00
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhc------CCcEeEEecCCCCCChHHHHHHHHHH
Q 047682 262 QEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVG------PALALFMDEISTGLDSSTTFQIVTSL 335 (1425)
Q Consensus 262 ~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~------~p~illLDEptsgLD~~t~~~i~~~L 335 (1425)
...........+.+ +..|.. ..+.+|+|++|++..+.+++. .|++++ +|++|......+++.|
T Consensus 187 --i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I 255 (337)
T 2qm8_A 187 --IKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRI 255 (337)
T ss_dssp --CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHH
T ss_pred --HHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHH
Confidence 00001111112222 112210 123589999999999999887 578876 9999999999999988
Q ss_pred HHHHH
Q 047682 336 RQIIH 340 (1425)
Q Consensus 336 ~~~~~ 340 (1425)
.+...
T Consensus 256 ~~~~~ 260 (337)
T 2qm8_A 256 EDHRS 260 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 240
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.97 E-value=4.5e-12 Score=156.28 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=66.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHH
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRE 214 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 214 (1425)
.+++++++.+++|+.++|+|||||||||||++|+|.++|+ +|.|+++|.+--.......++++.|........|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 4789999999999999999999999999999999999988 8999999865222222345777777654334568888
Q ss_pred HHHhhhh
Q 047682 215 TLAFSAR 221 (1425)
Q Consensus 215 ~l~f~~~ 221 (1425)
.+..+.+
T Consensus 325 ~l~~~LR 331 (511)
T 2oap_1 325 LLRAALR 331 (511)
T ss_dssp HHHTTGG
T ss_pred HHHHhhc
Confidence 8876655
No 241
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.95 E-value=1.2e-11 Score=148.46 Aligned_cols=137 Identities=18% Similarity=0.176 Sum_probs=90.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-------ccceEEEEc-----
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-------PQRTAAYIS----- 201 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~----- 201 (1425)
..+|+++ + .++|++++|+|||||||||||++|+|.+.++ +|+|.+.|.++.... ..+.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 4578888 4 4899999999999999999999999999887 899999998874211 112344443
Q ss_pred ----cCCCC--CCC----CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHH
Q 047682 202 ----QHDVH--IGE----MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYV 271 (1425)
Q Consensus 202 ----Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (1425)
|++.. +++ .|+++++.++..-... +. .+ .. .+ .....+ .
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv---~~---tl---------h~-~~--------------~~~~i~-r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLV---MS---TL---------HT-NT--------------AVGAVT-R 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEE---EE---EE---------CC-SS--------------SHHHHH-H
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCc---cc---cc---------ch-hh--------------HHHHHH-H
Confidence 76544 344 5788888765321100 00 00 00 00 011122 3
Q ss_pred HHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCCcEeE
Q 047682 272 IKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALF 315 (1425)
Q Consensus 272 l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~ill 315 (1425)
|..+|++... ....|||||+|| ||++|+.+|++..
T Consensus 280 L~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 5667876532 224699999999 9999999999875
No 242
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.95 E-value=1.6e-10 Score=133.78 Aligned_cols=124 Identities=13% Similarity=0.104 Sum_probs=78.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE---CCccCCCCCc--c-ceEEEEccCCCCC-----CCCCHH
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTY---NGHNMDEFVP--Q-RTAAYISQHDVHI-----GEMTVR 213 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~--~-~~~~yv~Q~d~~~-----~~lTV~ 213 (1425)
.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.+.... + +.++|++|++.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 468999999999999999999999 98887 999999 8987754321 1 2589999987543 68899
Q ss_pred HHH--HhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc-cccccccCccc
Q 047682 214 ETL--AFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDV-CADTMVGDEML 290 (1425)
Q Consensus 214 E~l--~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~ 290 (1425)
|++ .|+. .. ... |+.. . ..+. .+....++++++.+||+. .++.. .
T Consensus 238 e~l~~~f~~-~~-------~~~--c~~~-~--~~~~--------------~e~~~~v~~~l~~~~L~~~~~~~~-----~ 285 (302)
T 2yv5_A 238 REVRNYFRE-FL-------RYQ--CKYP-D--CTHT--------------NEPGCAVKEAVKNGEISCERYKSY-----L 285 (302)
T ss_dssp GGGGGGCGG-GH-------HHH--HHST-T--CCSS--------------SCTTCHHHHHHHTTSSCHHHHHHH-----H
T ss_pred HHHHHHHHH-HH-------Hcc--CCCC-C--CCCC--------------CCCCCHHHHHHHcCCCCHHHHHHH-----H
Confidence 888 4431 00 000 1100 0 0000 011224677888899975 55544 3
Q ss_pred ccCChhhhhhHHHHH
Q 047682 291 RGISGGQRKRVTTGE 305 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~ 305 (1425)
+.|||.++|++.|||
T Consensus 286 ~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 286 KIIKVYLEEIKELCR 300 (302)
T ss_dssp HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 469999999999986
No 243
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.95 E-value=1.3e-09 Score=130.06 Aligned_cols=98 Identities=19% Similarity=0.265 Sum_probs=73.6
Q ss_pred HHHHHHHHhCCccc-------ccccccC----cccccCChhhhhhH------HHHHHHhcC-CcEeEEecCCCCCChHHH
Q 047682 267 VTDYVIKVLGLDVC-------ADTMVGD----EMLRGISGGQRKRV------TTGEMLVGP-ALALFMDEISTGLDSSTT 328 (1425)
Q Consensus 267 ~~~~~l~~lgL~~~-------~~t~vg~----~~~~~LSGGqrqRv------sia~al~~~-p~illLDEptsgLD~~t~ 328 (1425)
.++..++.+++++. .+..+.+ ..+..+|||||||+ ++|+++.++ |++++|||||+|||+.++
T Consensus 244 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~ 323 (371)
T 3auy_A 244 YLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRR 323 (371)
T ss_dssp HHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHH
Confidence 34556777777651 1222222 34567999999988 567899999 999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEc
Q 047682 329 FQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILIS 368 (1425)
Q Consensus 329 ~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 368 (1425)
..+.+.|+++. .++++++ ++|+. ++...+|++++|+
T Consensus 324 ~~l~~~l~~~~--~~~~vi~-~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 324 AKLAEIFRKVK--SIPQMII-ITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHCC--SCSEEEE-EESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHHhc--cCCeEEE-EEChH-HHHhhCCEEEEEE
Confidence 99999998753 2346554 55554 5789999999997
No 244
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.95 E-value=2.9e-12 Score=150.58 Aligned_cols=164 Identities=13% Similarity=0.121 Sum_probs=102.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc-------cccceEEEeecCCCCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE-------TFARISGYCEQNDIHS 924 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~Q~~~~~ 924 (1425)
+.+|+++|+.+++|++++|+||||||||||+++|+|...+ ..|+|.+.|.+.... ..++.++|++|++..+
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 3589999999999999999999999999999999985431 246777777654221 2345689999988776
Q ss_pred CCC------------CHHHHHHHHh-------------------hccCCC-------CCC-HHHHHHHHHHHHHHcCCc-
Q 047682 925 PNV------------TVYESLLYSA-------------------WLRLPP-------DVD-SETRRMFLEEIMELVELN- 964 (1425)
Q Consensus 925 ~~l------------Tv~E~l~~~~-------------------~lr~~~-------~~~-~~~~~~~v~~~l~~l~l~- 964 (1425)
+.. +++|.+...- .+.... +.. ..........+.+...+-
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivv 199 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIA 199 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEE
Confidence 532 2333331100 000000 000 000000000111221111
Q ss_pred -cccccccCCCCCCcCCHHHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 047682 965 -PLRQSLVGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025 (1425)
Q Consensus 965 -~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~ 1025 (1425)
+..|.. ....+|+|++|++..+++++. +|++++ ||++|......+++.|.++.
T Consensus 200 lNK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 200 VNKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp EECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred EEchhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 111210 123589999999999999987 688887 99999999999999998765
No 245
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.94 E-value=3.4e-10 Score=120.66 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=42.7
Q ss_pred HhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccH
Q 047682 993 LVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1040 (1425)
Q Consensus 993 L~~~p~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 1040 (1425)
.+.+|++|+||||++ ++|+.....+.+++++..+.|+++|+|||.+..
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 355999999999995 999999999999999887789999999998753
No 246
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.94 E-value=4.7e-11 Score=137.02 Aligned_cols=128 Identities=15% Similarity=0.111 Sum_probs=83.7
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhh----
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAW---- 938 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~---- 938 (1425)
+++.++||.|+||||||||.+.|++.... . |. . ++.+.+|+||+.+++. ++++++.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~------g~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---K------YG-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---H------HG-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---c------CC-----C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 37889999999999999999999985431 0 10 0 2345666999988764 88899887521
Q ss_pred cc---CCCCCCHHHHHHHHHHHHHHcCCc--cc--cccccCCCCCCcCCHHHHHHHHHH--HHHhhCCcEEEEeCCCCCC
Q 047682 939 LR---LPPDVDSETRRMFLEEIMELVELN--PL--RQSLVGLPGVSGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGL 1009 (1425)
Q Consensus 939 lr---~~~~~~~~~~~~~v~~~l~~l~l~--~~--~~~~~g~~~~~~lSgGqrqRl~ia--~~L~~~p~illLDEPTsgL 1009 (1425)
+. .|...+. +...+.++.+... .. ....+. .....+||||+||+.+| +++ +|+|||+||||+++
T Consensus 93 ~~~~g~p~a~d~----~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 93 LQGRGLPGTHDM----KLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp GSSSCSTTSBCH----HHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhhccCcchhHH----HHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 11 1222222 2344555555332 00 000011 11246999999999997 555 99999999999999
Q ss_pred CHHH
Q 047682 1010 DARA 1013 (1425)
Q Consensus 1010 D~~~ 1013 (1425)
|+..
T Consensus 166 d~~~ 169 (290)
T 1odf_A 166 NPIL 169 (290)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9853
No 247
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.94 E-value=2.8e-11 Score=140.98 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=93.3
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc-------cccc--eEEEeecCCCCCCCCCHHHH
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE-------TFAR--ISGYCEQNDIHSPNVTVYES 932 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~~~--~~gyv~Q~~~~~~~lTv~E~ 932 (1425)
.++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+++ .+.|++|+..+.|.+||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 368999999999999999999999995432 257888888765321 1122 34599999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 047682 933 LLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012 (1425)
Q Consensus 933 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~ 1012 (1425)
+.++..... +. -+++..|+.+..+.. .++.-.|++++..++.+++||.+| |
T Consensus 204 l~~~~~~~~--d~----------vliDtaG~~~~~~~l------------~~eL~~i~ral~~de~llvLDa~t-~---- 254 (328)
T 3e70_C 204 IQHAKARGI--DV----------VLIDTAGRSETNRNL------------MDEMKKIARVTKPNLVIFVGDALA-G---- 254 (328)
T ss_dssp HHHHHHHTC--SE----------EEEEECCSCCTTTCH------------HHHHHHHHHHHCCSEEEEEEEGGG-T----
T ss_pred HHHHHhccc--hh----------hHHhhccchhHHHHH------------HHHHHHHHHHhcCCCCEEEEecHH-H----
Confidence 976532110 00 011112222211111 122234889998888888888555 4
Q ss_pred HHHHHHHHHHHHHh-CCCEEEEEecCc
Q 047682 1013 AAAIVMRTVRNTVD-TGRTVVCTIHQP 1038 (1425)
Q Consensus 1013 ~~~~i~~~l~~~~~-~g~tvi~~~H~~ 1038 (1425)
..+++.++.+.+ .+.|+|++||..
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 344555566553 489999999954
No 248
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.93 E-value=1.2e-10 Score=124.19 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=36.6
Q ss_pred hcCCcEeEEecCCC-CCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhh
Q 047682 308 VGPALALFMDEIST-GLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPE 356 (1425)
Q Consensus 308 ~~~p~illLDEpts-gLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~ 356 (1425)
+.+|++|+||||++ ++|......+.+.+..... .++++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 44899999999985 9999999888888877643 456777765555444
No 249
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.92 E-value=5.5e-13 Score=144.88 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=43.5
Q ss_pred HHH-HHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEEEcC
Q 047682 303 TGE-MLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIILISE 369 (1425)
Q Consensus 303 ia~-al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 369 (1425)
.++ +++.+|++++|||+|+++|..+...|.+.|....+.. .+.| . . ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG-S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh-c--c-CCceEEEECCC
Confidence 455 7888999999999999999999999999988775532 1122 1 2 67899988764
No 250
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.90 E-value=6.3e-10 Score=132.90 Aligned_cols=152 Identities=20% Similarity=0.229 Sum_probs=86.6
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhh--cCCCC---CceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVL--AGRKT---GGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLL 934 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l--~g~~~---~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 934 (1425)
+-|++|++++|+||||||||||++.| .+..+ ++.-.+.+++++... ........
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~---------------------~~~~rl~~ 231 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT---------------------FRPVRLVS 231 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC---------------------CCHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc---------------------cCHHHHHH
Confidence 56899999999999999999999955 44332 111234566665321 01100000
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCH-HHHHHHHHHHHHh--hCCcEEEEeCCCCCCCH
Q 047682 935 YSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGLDA 1011 (1425)
Q Consensus 935 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSg-GqrqRl~ia~~L~--~~p~illLDEPTsgLD~ 1011 (1425)
....+. ... +++++.+-+ . +..+. .+.+.+.-+.+++ .+|+++++||||+.+|.
T Consensus 232 ~a~~~g----l~~-------~~vleni~~--------~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 232 IAQRFG----LDP-------DDALNNVAY--------A----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHTT----CCH-------HHHHHTEEE--------E----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHcC----CCh-------HhHhhcEEE--------e----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 111111 111 112221111 0 11222 2334444444443 46999999999999996
Q ss_pred HHH------------HHHHHHHHHHHhC-CCEEEEEecCcc------------------HHHHHhcCEEEEEeCC
Q 047682 1012 RAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS------------------IDIFEAFDELFLMKRG 1055 (1425)
Q Consensus 1012 ~~~------------~~i~~~l~~~~~~-g~tvi~~~H~~~------------------~~~~~~fD~v~~l~~G 1055 (1425)
... ..+++.|++++++ |.|||+++|..+ ..+...+|.++.|+++
T Consensus 289 ~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 289 DFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 433 6678888888765 999999999821 1234567999999864
No 251
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.87 E-value=5.3e-12 Score=155.71 Aligned_cols=178 Identities=14% Similarity=0.142 Sum_probs=104.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
..+++++++.+++|+.++|+|||||||||||++|+|..++ ..|.|.++|.+.-...-...+++..|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 3578999999999999999999999999999999997653 36888998864211111234556655443222345555
Q ss_pred HHHHHhhccCCC------CCCHHHHHHH------------------HHHHHHHcCCcc--ccccccC-C----CCCCcCC
Q 047682 932 SLLYSAWLRLPP------DVDSETRRMF------------------LEEIMELVELNP--LRQSLVG-L----PGVSGLS 980 (1425)
Q Consensus 932 ~l~~~~~lr~~~------~~~~~~~~~~------------------v~~~l~~l~l~~--~~~~~~g-~----~~~~~lS 980 (1425)
.+.-. +|+.+ .+...+.... ++++++.+...+ ....... . .....+|
T Consensus 325 ~l~~~--LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 325 LLRAA--LRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHTT--GGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHh--hccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 54322 22211 1111111111 122333322211 0000000 0 0023479
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCccHHHHHhc
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPSIDIFEAF 1046 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~--~~H~~~~~~~~~f 1046 (1425)
+|||||.+++. + | |+|||+.+...+++.|.++.+.|+|+++ ++|+.+ ++...+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 99999887752 1 7 9999998777777777666556888875 888765 454444
No 252
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.84 E-value=5.1e-11 Score=130.35 Aligned_cols=30 Identities=40% Similarity=0.488 Sum_probs=28.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
.++|++++|+||||||||||+++|+|.+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999999999875
No 253
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.83 E-value=1.3e-10 Score=134.62 Aligned_cols=122 Identities=14% Similarity=0.167 Sum_probs=79.7
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEE---cCccCCcc--ccc-ceEEEeecCCCCC-----CCCCHH
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKI---SGYPKKQE--TFA-RISGYCEQNDIHS-----PNVTVY 930 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gyv~Q~~~~~-----~~lTv~ 930 (1425)
+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|.+.... ..+ +.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 3469999999999999999999999 654 34688888 88765321 112 2479999998653 68899
Q ss_pred HHH--HHHh----hccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCcCCHHHHHHHHHHHH
Q 047682 931 ESL--LYSA----WLRLPPDVDSETRRMFLEEIMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVE 992 (1425)
Q Consensus 931 E~l--~~~~----~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGqrqRl~ia~~ 992 (1425)
|++ .|.. .++........+....++++++.++|.+ ..+... +.|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 887 4431 0111111111222345889999999986 555543 4699999999999874
No 254
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.82 E-value=2.2e-09 Score=127.18 Aligned_cols=164 Identities=15% Similarity=0.051 Sum_probs=84.7
Q ss_pred EEEEcCCCCChhhHHhhhcCC-CCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCCC
Q 047682 868 TALMGVSGAGKTTLMDVLAGR-KTGGYITGNIKISGYPKKQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPDV 945 (1425)
Q Consensus 868 ~al~G~sGaGKTTLl~~l~g~-~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~~ 945 (1425)
+.|.||||+|||||+++|++. ... ..|.+.++|.+... ....+.+++++|.+.+..... + ....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP--GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D----------MGNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT--TCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC--CCCeEEecceeecccccccceeeeecccceEEecHh--h----------cCCc
Confidence 899999999999999999983 322 24777777765321 112345678888664321110 0 0001
Q ss_pred CHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 047682 946 DSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025 (1425)
Q Consensus 946 ~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~ 1025 (1425)
.... +.+.++.+......+... .+|| +..+|+++++|||++ ||..+...+.+.+++..
T Consensus 105 ~~~~----~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRIV----IQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHHH----HHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chHH----HHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 1111 233333321111011110 3566 788999999999999 99999999999998764
Q ss_pred hCCCEEEEEecCccHHHHHhcCEEEEEeCCcEEEEECCCCCCchhHHHHHhh
Q 047682 1026 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSSHLISYFEA 1077 (1425)
Q Consensus 1026 ~~g~tvi~~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~~ 1077 (1425)
.++++|+++|+|+. +... +.++ ...+.+.|+.. .++.++...
T Consensus 163 -~~~~~Il~t~~~~~-l~~~-----l~sR-~~~~~~~~~~~--~~~~~~l~~ 204 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSP-IIAP-----IKSQ-CLLIRCPAPSD--SEISTILSD 204 (354)
T ss_dssp -TTEEEEEEESCSCS-SCHH-----HHTT-SEEEECCCCCH--HHHHHHHHH
T ss_pred -CCCEEEEEeCCHHH-HHHH-----HHhh-ceEEecCCcCH--HHHHHHHHH
Confidence 46899999999863 2111 1123 24566677653 455555554
No 255
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.82 E-value=1.9e-08 Score=120.15 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=44.4
Q ss_pred cCCcEeEEecCCCCCChHHH------------HHHHHHHHHHHHhcCCEEEEEEecCh-------------------hhH
Q 047682 309 GPALALFMDEISTGLDSSTT------------FQIVTSLRQIIHILNGTAVISLLQPA-------------------PET 357 (1425)
Q Consensus 309 ~~p~illLDEptsgLD~~t~------------~~i~~~L~~~~~~~~~t~ii~~~q~~-------------------~~~ 357 (1425)
.+|+++++|||++.+|.... .++++.|+++++..+.|+|++ +|.. ..+
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv-~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVT-NQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEE-EEC--------------------CHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEE-EeecccCCccccccCCCccCCchhHH
Confidence 57999999999999997543 678888999988777676665 4441 224
Q ss_pred HhhcCeEEEEcCCe
Q 047682 358 YDLFDDIILISEGQ 371 (1425)
Q Consensus 358 ~~~~D~vilL~~G~ 371 (1425)
.+.+|.++.|+.|+
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 56789999998653
No 256
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.82 E-value=1.4e-11 Score=140.52 Aligned_cols=141 Identities=14% Similarity=0.149 Sum_probs=92.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCC-CCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHD-VHIGE 209 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 209 (1425)
..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.++..... .+.+++++|+. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 35899999999999 999999999999999999998763 789999987644321 23466666652 34445
Q ss_pred CCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 047682 210 MTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEM 289 (1425)
Q Consensus 210 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 289 (1425)
+++.|++......++ ..+ .+ .+.... +..
T Consensus 106 i~~~Deid~~~~~r~--------------~~~--------------------------~~------~~~~~~-----~~~ 134 (274)
T 2x8a_A 106 VIFFDEVDALCPRRS--------------DRE--------------------------TG------ASVRVV-----NQL 134 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHH-----HHH
T ss_pred eEeeehhhhhhcccC--------------CCc--------------------------ch------HHHHHH-----HHH
Confidence 555555543211000 000 00 000001 122
Q ss_pred cccCChhhhhhHHHHHHHhcCCcEeEEecCCC------------CCChHHHHHHHHH
Q 047682 290 LRGISGGQRKRVTTGEMLVGPALALFMDEIST------------GLDSSTTFQIVTS 334 (1425)
Q Consensus 290 ~~~LSGGqrqRvsia~al~~~p~illLDEpts------------gLD~~t~~~i~~~ 334 (1425)
...|||||+||+.+++++..+|++| ||++. -.|...+.+|++.
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKT 189 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHH
T ss_pred HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHH
Confidence 3459999999999999999999985 98864 2355566666543
No 257
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.81 E-value=2.8e-09 Score=109.90 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=30.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
.+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356666 8999999999999999999999998865
No 258
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.79 E-value=6.9e-12 Score=148.93 Aligned_cols=168 Identities=17% Similarity=0.207 Sum_probs=113.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcC------------CCCCCCcccEEEECCccCCC----CCccceE---EEEccC
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGK------------LDPSLKLSGRVTYNGHNMDE----FVPQRTA---AYISQH 203 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~------------~~~~~~~~G~V~~~G~~~~~----~~~~~~~---~yv~Q~ 203 (1425)
.+++|..++|+|+||||||||+|+|+|. .+|+ +|.|.++|..++. ..+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~---~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE---EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT---EEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce---eeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 4578999999999999999999999993 3454 8999999854321 1223333 467777
Q ss_pred CCCCCCCCHHHHH--HhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccc
Q 047682 204 DVHIGEMTVRETL--AFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCA 281 (1425)
Q Consensus 204 d~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 281 (1425)
+-+....+..|++ .|-+.++.. + .++..+...
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~----d---------------------------------------~il~Vvd~~--- 126 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV----D---------------------------------------AIYQVVRAF--- 126 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC----S---------------------------------------EEEEEEECC---
T ss_pred cccccCCcHHHHHHHHHHHHHHHH----H---------------------------------------HHHHHHhcc---
Confidence 7777777766555 332222110 0 000111111
Q ss_pred cccccCcccccCChhhhhhHHHHHHHhcCC--cEeEEecCCCCCChHHHHHHHHHHHHH-HHhcCCEEEEEEecChhhHH
Q 047682 282 DTMVGDEMLRGISGGQRKRVTTGEMLVGPA--LALFMDEISTGLDSSTTFQIVTSLRQI-IHILNGTAVISLLQPAPETY 358 (1425)
Q Consensus 282 ~t~vg~~~~~~LSGGqrqRvsia~al~~~p--~illLDEptsgLD~~t~~~i~~~L~~~-~~~~~~t~ii~~~q~~~~~~ 358 (1425)
++..+..+||+. +| +++++|||+.++|.......++.++.. .. ++++++ .|...++.
T Consensus 127 ----~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~--~g~ti~--sh~~~~~~ 186 (392)
T 1ni3_A 127 ----DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR--GANTLE--MKAKKEEQ 186 (392)
T ss_dssp ----CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--SSCSSS--HHHHHHHH
T ss_pred ----ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh--cCCccc--cccHHHHH
Confidence 112222366653 88 999999999999999998888888876 33 233333 77888899
Q ss_pred hhcCeEE-EEcCC-eEEEecChh
Q 047682 359 DLFDDII-LISEG-QIVFQGPRE 379 (1425)
Q Consensus 359 ~~~D~vi-lL~~G-~iv~~G~~~ 379 (1425)
++||++. +|.+| ++++.|+.+
T Consensus 187 ~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 187 AIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHHhccCCceeecCCCC
Confidence 9999999 99999 888777643
No 259
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.77 E-value=1.2e-11 Score=148.74 Aligned_cols=133 Identities=14% Similarity=0.024 Sum_probs=88.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc-------ccccceEEEee------
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-------ETFARISGYCE------ 918 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~------ 918 (1425)
..+|+++ + .++|++++|+|||||||||||++|+|.... ..|+|.+.+.+... ....+.+|+.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 3478888 4 489999999999999999999999995432 24777777766421 12223345544
Q ss_pred ---cCCCC--CCC----CCHHHHHHHHhhccC----CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 919 ---QNDIH--SPN----VTVYESLLYSAWLRL----PPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 919 ---Q~~~~--~~~----lTv~E~l~~~~~lr~----~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
|++.. .+. .|+.+++.++..-.. ....+.. +.++ .+..+++.+.. . ...|||||+|
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~---~~i~-rL~~lgl~~~~--~-----~~~LSgg~~Q 300 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV---GAVT-RLRDMGIEPFL--I-----SSSLLGVLAQ 300 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH---HHHH-HHHHHTCCHHH--H-----HHHEEEEEEE
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH---HHHH-HHHHcCCcHHH--H-----HHHHHHHHHH
Confidence 77654 233 689999887542110 0011111 2223 45677887643 2 3469999999
Q ss_pred HHHHHHHHhhCCcEEE
Q 047682 986 RLTIAVELVANPSIIF 1001 (1425)
Q Consensus 986 Rl~ia~~L~~~p~ill 1001 (1425)
| ||++|+.+|++..
T Consensus 301 R--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 301 R--LVRTLCPDCKEPY 314 (418)
T ss_dssp E--EEEEECTTTCEEE
T ss_pred H--hhhhhcCCCCccC
Confidence 9 9999999999875
No 260
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.75 E-value=6.2e-11 Score=139.51 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=96.4
Q ss_pred ceeeeceEEEEeCC-------eEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcccEEEECCccCCCC---CccceEEEEcc
Q 047682 134 FTILKDVNGIVKPS-------RLTLLLGPPASGKTTLLLALAGKLDPSL-KLSGRVTYNGHNMDEF---VPQRTAAYISQ 202 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G-------~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~---~~~~~~~yv~Q 202 (1425)
..+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..+|.++... ..++.+.++.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 35788888888776 8899999999999999999999873211 1266666655544221 11356999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccc
Q 047682 203 HDVHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCAD 282 (1425)
Q Consensus 203 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 282 (1425)
.+.+.+ ++.|++....+..+. +.+. ... .....++..+..++|.. ++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~----~i~~--~~~------------------------~~~~~i~~~l~~~~li~-at 157 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQI----DIMI--GKG------------------------PSAKSIRIDIQPFTLVG-AT 157 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCC----CC-----------------------------------------CCCEEEE-EE
T ss_pred hhhcCH--HHHHHHHHHHHhccc----ceee--ccC------------------------cccccccccCCCeEEEE-ec
Confidence 766554 788888543221100 0000 000 00011222334445543 44
Q ss_pred ccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcC
Q 047682 283 TMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILN 343 (1425)
Q Consensus 283 t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~ 343 (1425)
+..+ .||+|+|+|+.++ .+||+.+..++.+.|++.++..+
T Consensus 158 ~~~~-----~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~ 197 (334)
T 1in4_A 158 TRSG-----LLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD 197 (334)
T ss_dssp SCGG-----GSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT
T ss_pred CCcc-----cCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC
Confidence 4443 5999999998554 78999999999999998876543
No 261
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.75 E-value=5.7e-11 Score=129.99 Aligned_cols=148 Identities=15% Similarity=0.110 Sum_probs=77.8
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCCCC-ceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhcc
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLR 940 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr 940 (1425)
.++|++++|+||||||||||+++|+|...+ |...|.|.++|. ++.. +..+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~-------------------~~~~-~~~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF-------------------HLDN-RLLEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG-------------------BCCH-HHHGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC-------------------cCCH-HHHHHhcccccCC
Confidence 469999999999999999999999996431 112344444443 3221 1111110000000
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHH-HHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 047682 941 LPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA-VELVANPSIIFMDEPTSGLDARAAAIVMR 1019 (1425)
Q Consensus 941 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia-~~L~~~p~illLDEPTsgLD~~~~~~i~~ 1019 (1425)
.+...+... ..+.++.+...+..+...... ..++|+||+||+++| +.++.++.++++|||.. .
T Consensus 79 ~~~~~~~~~----~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~ 142 (208)
T 3c8u_A 79 APETFDFEG----FQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------R 142 (208)
T ss_dssp SGGGBCHHH----HHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------G
T ss_pred CCchhhHHH----HHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchh-----------H
Confidence 111112121 122232221111111111211 235899999999998 78888888888888841 1
Q ss_pred HHHHHHhCCCEEEEEecCccHHHHHhcCE
Q 047682 1020 TVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1048 (1425)
Q Consensus 1020 ~l~~~~~~g~tvi~~~H~~~~~~~~~fD~ 1048 (1425)
.+++. --.+|++.+.....+.....|
T Consensus 143 ~l~~~---~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 143 DLTAI---WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp GGGGT---CSEEEEECCCHHHHHHHHHHH
T ss_pred HHHHh---cCEEEEEeCCHHHHHHHHHHH
Confidence 12222 235677777665434455555
No 262
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.73 E-value=3e-10 Score=132.00 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=59.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEE---CCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhh
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLD--PSLKLSGRVTY---NGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFS 219 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~---~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 219 (1425)
++|++++|+||||||||||+++|+|.+. |+ +|+|.+ +|..... ..++.++++ |+..+.+.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8899999999999999999999999987 77 899999 8876432 123457788 777777889999999886
Q ss_pred hhh
Q 047682 220 ARC 222 (1425)
Q Consensus 220 ~~~ 222 (1425)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 263
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.73 E-value=1.5e-09 Score=125.70 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=50.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE---CCccCCCCCc---cceEEEEccCCC-----------
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTY---NGHNMDEFVP---QRTAAYISQHDV----------- 205 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~---~~~~~yv~Q~d~----------- 205 (1425)
.+.+|++++|+||||||||||||+|+|+..|+ +|+|.+ +|++++.... .+.++||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999999998 999999 8988764332 135899999864
Q ss_pred -----CCCCCCHHHHHHhh
Q 047682 206 -----HIGEMTVRETLAFS 219 (1425)
Q Consensus 206 -----~~~~lTV~E~l~f~ 219 (1425)
+++++|+ ||+.|+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5788888 888775
No 264
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.72 E-value=7.6e-09 Score=122.56 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=67.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc-CCCCCCCcccEEEECCccCCCCC-ccceEEEEccCCCCCCCCCHHHHHHhhhhhcCCCC
Q 047682 150 TLLLGPPASGKTTLLLALAG-KLDPSLKLSGRVTYNGHNMDEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 227 (1425)
Q Consensus 150 ~~llGp~GsGKSTLL~~L~G-~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 227 (1425)
++|.||||+|||||+++|+| ...++ .|++.++|.+..... .+..++|++|.+.+....+ + .+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~-- 103 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MGN-- 103 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC----------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h--------cCC--
Confidence 89999999999999999999 56776 899999987664322 1356778888653211100 0 000
Q ss_pred cchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHHHHH
Q 047682 228 RYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEML 307 (1425)
Q Consensus 228 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al 307 (1425)
.+ ...+...++.+......+..+ .+|| +
T Consensus 104 --------------------~~---------------~~~~~~~i~~~~~~~~~~~~~------~ls~-----------l 131 (354)
T 1sxj_E 104 --------------------ND---------------RIVIQELLKEVAQMEQVDFQD------SKDG-----------L 131 (354)
T ss_dssp --------------------CC---------------HHHHHHHHHHHTTTTC---------------------------
T ss_pred --------------------cc---------------hHHHHHHHHHHHHhccccccc------cccc-----------c
Confidence 00 000111222211110001111 3566 7
Q ss_pred hcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChh
Q 047682 308 VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAP 355 (1425)
Q Consensus 308 ~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~ 355 (1425)
.++|+++++|||++ ||..+...+.+.+++.. .++++|.++|...
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~---~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS---KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST---TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---CCCEEEEEeCCHH
Confidence 88999999999999 99999999998888752 3455555555543
No 265
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.64 E-value=6e-11 Score=140.90 Aligned_cols=171 Identities=10% Similarity=0.064 Sum_probs=114.9
Q ss_pred EEeCCeEEEEEcCCCCChhhHHhhhcCCC----------CCceEEEEEEEcCccCCc----ccccce---EEEeecCCCC
Q 047682 861 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYITGNIKISGYPKKQ----ETFARI---SGYCEQNDIH 923 (1425)
Q Consensus 861 ~i~~Ge~~al~G~sGaGKTTLl~~l~g~~----------~~~~~~G~i~i~g~~~~~----~~~~~~---~gyv~Q~~~~ 923 (1425)
.+++|..++|+|+||||||||+|+|+|.. +-.+..|.+.++|..... ...++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 45789999999999999999999999932 112457999998843210 011122 2467777777
Q ss_pred CCCCCHHHHH--HHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCC--cE
Q 047682 924 SPNVTVYESL--LYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP--SI 999 (1425)
Q Consensus 924 ~~~lTv~E~l--~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p--~i 999 (1425)
.+..+..|.+ .|.+.++.. +.++..++..+ ...+..+|++. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD-------DAEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC-------TTCSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc-------cceeeeecccc------------Ccchhh
Confidence 7777766655 443333311 11111111111 11123355542 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCccHHHHHhcCEEE-EEeCCcEEEEECCCC
Q 047682 1000 IFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELF-LMKRGGYEIYVGPLG 1065 (1425)
Q Consensus 1000 llLDEPTsgLD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~~~~~fD~v~-~l~~Gg~~~y~G~~~ 1065 (1425)
+++|||+.++|+......++.+++. .+.|.||+ +|... ++.+.||++. +|.+|.+.++.|...
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999999999999999999988 66678865 99875 6888999999 888641667777764
No 266
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.62 E-value=3.3e-09 Score=121.94 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=66.8
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEE---cCccCCc-ccccce-EEEeecCCCCCC----CCCHH
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKI---SGYPKKQ-ETFARI-SGYCEQNDIHSP----NVTVY 930 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i---~g~~~~~-~~~~~~-~gyv~Q~~~~~~----~lTv~ 930 (1425)
+.+.+|++++|+||||||||||+|+|+|... ...|+|.+ +|..... ....+. .||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 4567899999999999999999999999654 34788888 7765432 112222 699999987765 6899
Q ss_pred HHHH--HH------hhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHH
Q 047682 931 ESLL--YS------AWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 985 (1425)
Q Consensus 931 E~l~--~~------~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrq 985 (1425)
|++. |. ..++........+....++++++.++|.+.+.... ..++.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 32 11222211111122345789999999976443221 246677765
No 267
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.62 E-value=6.5e-09 Score=119.53 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=43.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE---CCccCCCCCcc-ce-EEEEccCCCCCC----CCCH
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTY---NGHNMDEFVPQ-RT-AAYISQHDVHIG----EMTV 212 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~~-~~-~~yv~Q~d~~~~----~lTV 212 (1425)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|+..+..... +. .+|+.|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 345689999999999999999999999999887 999998 88766543211 22 799999876654 6899
Q ss_pred HHHHH
Q 047682 213 RETLA 217 (1425)
Q Consensus 213 ~E~l~ 217 (1425)
|++.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 8884
No 268
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.58 E-value=3.8e-10 Score=132.80 Aligned_cols=149 Identities=16% Similarity=0.073 Sum_probs=92.1
Q ss_pred eeeeceeEEEeCC-------eEEEEEcCCCCChhhHHhhhcCCCCC--ceEEEEEEEcCccCCc---ccccceEEEeecC
Q 047682 853 VLLNGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNIKISGYPKKQ---ETFARISGYCEQN 920 (1425)
Q Consensus 853 ~iL~~vs~~i~~G-------e~~al~G~sGaGKTTLl~~l~g~~~~--~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~ 920 (1425)
.+++++++.+++| +.++|+||||+|||||+++|+|.... .+.+|.+..++.+... ...++.++|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 4777888888776 88999999999999999999985421 1234544444433211 1123568999998
Q ss_pred CCCCCCCCHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCc
Q 047682 921 DIHSPNVTVYESLLYSAWLRLPPDV--DSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 998 (1425)
Q Consensus 921 ~~~~~~lTv~E~l~~~~~lr~~~~~--~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~ 998 (1425)
+.+.+ ++.|++........ .+. ......+.++..++.+++.. +++. ...||+|+|||+.++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~~-~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~-------- 174 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDFQ-IDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII-------- 174 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTSC-CCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE--------
T ss_pred hhcCH--HHHHHHHHHHHhcc-cceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce--------
Confidence 87765 78888854332111 010 01111223444444455543 3333 246999999998655
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 047682 999 IIFMDEPTSGLDARAAAIVMRTVRNTVD 1026 (1425)
Q Consensus 999 illLDEPTsgLD~~~~~~i~~~l~~~~~ 1026 (1425)
.+||+.+...+.++|++.++
T Consensus 175 --------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 --------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp --------EECCCCCHHHHHHHHHHHHH
T ss_pred --------eeCCCCCHHHHHHHHHHHHH
Confidence 78889899999999998764
No 269
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.58 E-value=3.9e-11 Score=136.99 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=85.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc---cccceEEEeecCC-CCCCCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE---TFARISGYCEQND-IHSPNV 927 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~-~~~~~l 927 (1425)
..+++++++.+++| ++|+||||+|||||+++|+|.... |.+.++|.+.... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 45889999999999 999999999999999999996542 6788998765321 1233456777763 445666
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 047682 928 TVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007 (1425)
Q Consensus 928 Tv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTs 1007 (1425)
++.|++...+..|. ... .+ .+....+.. ...|||||+||+.|++++..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r~-----~~~----~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRRS-----DRE----TG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred EeeehhhhhhcccC-----CCc----ch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 66666643221110 000 00 011222222 2369999999999999999999986 88864
No 270
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.56 E-value=7.8e-12 Score=135.74 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=42.9
Q ss_pred HHH-HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 047682 989 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 989 ia~-~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~l~ 1053 (1425)
+++ +++.+|++++|||+|+++|..+.+.|.+.|++..+. +...|.+ ..||++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 678888888999999999999999999998877542 2335632 4689998876
No 271
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.55 E-value=1.4e-08 Score=123.33 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=49.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF 191 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~ 191 (1425)
..+|+|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|+++...
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~ 70 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAGS 70 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEcccC
Confidence 3579999999999 999999999999999999999999998 99999999887543
No 272
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.55 E-value=5e-08 Score=112.49 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=79.4
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhh
Q 047682 140 VNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFS 219 (1425)
Q Consensus 140 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 219 (1425)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+... . ...|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r------~-------------~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTFR------A-------------AAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTTC------H-------------HHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEcccccc------H-------------HHHHHH---
Confidence 44556789999999999999999999999998765 6777765532110 0 001111
Q ss_pred hhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhh
Q 047682 220 ARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRK 299 (1425)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 299 (1425)
...++.+|++. + ...|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~-----~-----~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV-----I-----SHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE-----E-----CCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE-----E-----ecCCccCHH
Confidence 11233455542 1 237899999
Q ss_pred hH---HHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHH
Q 047682 300 RV---TTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIH 340 (1425)
Q Consensus 300 Rv---sia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~ 340 (1425)
++ ++++++..+++++++|||.. ......+++.|+++.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence 99 89999999999999999963 4555666766766544
No 273
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.53 E-value=2.5e-07 Score=103.21 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=43.8
Q ss_pred cCCcEeEEecCCCCC--ChHHHHHHHHHHHHHHHhcCCEEEEEEecChhh--------HHhhcCeEEEEcC
Q 047682 309 GPALALFMDEISTGL--DSSTTFQIVTSLRQIIHILNGTAVISLLQPAPE--------TYDLFDDIILISE 369 (1425)
Q Consensus 309 ~~p~illLDEptsgL--D~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~--------~~~~~D~vilL~~ 369 (1425)
.+|+++++|+|++.+ |.....+++..|.+.++..+.++++ ++|...+ +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~-~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIF-VSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEE-EEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEE-EecCCCCcccccccccceeEEEEEEEEE
Confidence 479999999999988 6655667777777777766666666 4554443 4678899999964
No 274
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.53 E-value=1.7e-07 Score=104.65 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=44.0
Q ss_pred hCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCccHH-------HHHhcCEEEEEeC
Q 047682 995 ANPSIIFMDEPTSGL--DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSID-------IFEAFDELFLMKR 1054 (1425)
Q Consensus 995 ~~p~illLDEPTsgL--D~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~-------~~~~fD~v~~l~~ 1054 (1425)
.+|+++++|||++.+ |......++..+.+++ +.|+|||+++|..... +.+.+|.++.|++
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 5544455555555554 5689999999986531 3567899999975
No 275
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.53 E-value=2e-07 Score=114.10 Aligned_cols=171 Identities=15% Similarity=0.145 Sum_probs=106.2
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEE-EEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
..|+++++-+++|+++.|.|++|+|||||+..+++..... .| .+.+-+.+ ++..+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E----------------------~s~~~ 246 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLE----------------------MSAQQ 246 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESS----------------------SCHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECC----------------------CCHHH
Confidence 4577888889999999999999999999999988742100 01 12222111 12111
Q ss_pred HHHH--Hh-------hccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHh--hCCcEE
Q 047682 932 SLLY--SA-------WLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSII 1000 (1425)
Q Consensus 932 ~l~~--~~-------~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~--~~p~il 1000 (1425)
...- +. .++. .....++ ...+.+.++.++..++.-.. ..++|.+|.+ ..++.++ .+|+++
T Consensus 247 l~~r~~~~~~~~~~~~l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~li 317 (454)
T 2r6a_A 247 LVMRMLCAEGNINAQNLRT-GKLTPED-WGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMI 317 (454)
T ss_dssp HHHHHHHHHHTCCHHHHHT-SCCCHHH-HHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEE
T ss_pred HHHHHHHHHcCCCHHHHhc-CCCCHHH-HHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEE
Confidence 1100 00 0111 1223322 23345555555443322111 2368999987 5667776 689999
Q ss_pred EEeCCCCCCCH--------HHHHHHHHHHHHHHhC-CCEEEEEec---------C--ccH-------HHHHhcCEEEEEe
Q 047682 1001 FMDEPTSGLDA--------RAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PSI-------DIFEAFDELFLMK 1053 (1425)
Q Consensus 1001 lLDEPTsgLD~--------~~~~~i~~~l~~~~~~-g~tvi~~~H---------~--~~~-------~~~~~fD~v~~l~ 1053 (1425)
++|+++...+. .....+.+.|+.++++ |++||+++| + |.. .+...+|.|++|.
T Consensus 318 vID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~ 397 (454)
T 2r6a_A 318 VIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLY 397 (454)
T ss_dssp EEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEE
T ss_pred EEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEe
Confidence 99999987742 3346777888888755 999999999 2 431 3566799999998
Q ss_pred CCc
Q 047682 1054 RGG 1056 (1425)
Q Consensus 1054 ~Gg 1056 (1425)
++.
T Consensus 398 r~~ 400 (454)
T 2r6a_A 398 RDD 400 (454)
T ss_dssp ETT
T ss_pred ccc
Confidence 754
No 276
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.51 E-value=1.6e-09 Score=125.76 Aligned_cols=86 Identities=13% Similarity=0.129 Sum_probs=64.7
Q ss_pred eeeeceeEEE-------------------eCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEE---cCccCCcccc
Q 047682 853 VLLNGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKI---SGYPKKQETF 910 (1425)
Q Consensus 853 ~iL~~vs~~i-------------------~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~~~ 910 (1425)
++++++|+.+ ++|+++||+||||||||||+++|+|.....+..|+|.+ ||...... .
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-V 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-H
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-H
Confidence 3677777776 89999999999999999999999995320012578888 88765332 2
Q ss_pred cceEEEeecCCCCCCCCCHHHHHHHHhhcc
Q 047682 911 ARISGYCEQNDIHSPNVTVYESLLYSAWLR 940 (1425)
Q Consensus 911 ~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr 940 (1425)
++.+|++ |+..+.+.+|+.+++.+...++
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 3446788 7777778899999998766554
No 277
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.48 E-value=1.3e-08 Score=129.06 Aligned_cols=159 Identities=20% Similarity=0.233 Sum_probs=98.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCC--------
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHD-------- 204 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d-------- 204 (1425)
...+++++++.+++|+.++|+||||+|||||+++|+|.+.+. .-|.+.+++.+.+... ..++|++|..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchHHHHHHHH
Confidence 345789999999999999999999999999999999999875 2388999888776543 4688988742
Q ss_pred --------------CCCCCCCHHHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHH
Q 047682 205 --------------VHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDY 270 (1425)
Q Consensus 205 --------------~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (1425)
+.+..+++.+|+.... +.. .+.+... .. . ..
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~-~~~--------------------~~~~~v~-------~~----~---~~ 166 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDN-CGR--------------------TKAPFID-------AT----G---AH 166 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECC-TTC--------------------SSCCEEE-------CT----T---CC
T ss_pred HHhhccchhhhhhcccccccccccceeecc-ccC--------------------CCCCEEE-------cC----C---CC
Confidence 1111222222211100 000 0000000 00 0 00
Q ss_pred HHHHhCCcccccccccCcccccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHH
Q 047682 271 VIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLR 336 (1425)
Q Consensus 271 ~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~ 336 (1425)
.-+.+|.-.... ....++|+|++|++..+.....++.+||+||+.. |++.....+.+.|+
T Consensus 167 ~~~L~G~~~~~~-----~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 167 AGALLGDVRHDP-----FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp HHHHHCEECCCC-----C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred HHhcCceEEech-----hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 111223211111 1123699999999999999999999999999998 88887666666654
No 278
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.47 E-value=1.6e-07 Score=107.96 Aligned_cols=141 Identities=17% Similarity=0.163 Sum_probs=86.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhcC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQG 224 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 224 (1425)
++|++++++|||||||||+++.|++.+.+. +| +++.++.++.. ..+..|.+...++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~~-- 159 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAEL-- 159 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHTT--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHHh--
Confidence 479999999999999999999999998754 45 24667776432 34556665542211
Q ss_pred CCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhhHHHH
Q 047682 225 VGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQRKRVTTG 304 (1425)
Q Consensus 225 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRvsia 304 (1425)
+|++.. . ..+ ++.-+.+++
T Consensus 160 --------------------------------------------------~gl~~~----~------~~~-~~~l~~al~ 178 (296)
T 2px0_A 160 --------------------------------------------------LQAPLE----V------CYT-KEEFQQAKE 178 (296)
T ss_dssp --------------------------------------------------TTCCCC----B------CSS-HHHHHHHHH
T ss_pred --------------------------------------------------cCCCeE----e------cCC-HHHHHHHHH
Confidence 122110 0 011 222355555
Q ss_pred HHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHh--cCCEEEEE-EecChhhHHhhcCeEEEEcCCeEEE
Q 047682 305 EMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHI--LNGTAVIS-LLQPAPETYDLFDDIILISEGQIVF 374 (1425)
Q Consensus 305 ~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~--~~~t~ii~-~~q~~~~~~~~~D~vilL~~G~iv~ 374 (1425)
+ +.+++++|+| |+|+|+.....+.+. .++... ...++++. .+|...++.+.+|++..+..|.++.
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el-~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDEL-KETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHH-HHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHH-HHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 4 4899999999 999998776544433 333210 11223332 3566667777777766666677765
No 279
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.47 E-value=1e-08 Score=118.59 Aligned_cols=100 Identities=14% Similarity=0.217 Sum_probs=63.5
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEE---cCccCCcc--cc-cceEEEeecCCC-------------
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKI---SGYPKKQE--TF-ARISGYCEQNDI------------- 922 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~--~~-~~~~gyv~Q~~~------------- 922 (1425)
+.+|++++|+||||||||||||+|+|... +..|+|.+ +|.+.... .+ .+.+||++|++.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 45799999999999999999999999765 34799998 78765321 11 134799999874
Q ss_pred ---CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCc-cccccc
Q 047682 923 ---HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELN-PLRQSL 970 (1425)
Q Consensus 923 ---~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~ 970 (1425)
++|.+|+ ||+.|.. ++. ..+.+..+.++++.++|. +..+..
T Consensus 244 ~~~l~~~~~~-~n~~~~~-~~~-----~~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSD-CNH-----VDEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HGGGSTTSSS-CCCSSTT-CCS-----SSCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCC-CcC-----CCCCCcHHHHHHHcCCCCHHHHHHH
Confidence 5788899 8887752 111 112234578999999995 555544
No 280
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.44 E-value=3.3e-07 Score=107.81 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhC--CcEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCccH-----
Q 047682 985 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI----- 1040 (1425)
Q Consensus 985 qRl~ia~~L~~~--p~illLDEPTsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~~H~~~~----- 1040 (1425)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.++++ .+.|+|||++.|..+.
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 2223445555554 3459999999996431
Q ss_pred ----------HHHHhcCEEEEEeCCcEEEEECC
Q 047682 1041 ----------DIFEAFDELFLMKRGGYEIYVGP 1063 (1425)
Q Consensus 1041 ----------~~~~~fD~v~~l~~Gg~~~y~G~ 1063 (1425)
.+...+|.++.+.++ +++-.|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~-~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRI-ETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEE-EEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEe-eeeecCc
Confidence 144578988888863 4444444
No 281
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.42 E-value=5.9e-08 Score=111.88 Aligned_cols=112 Identities=20% Similarity=0.224 Sum_probs=72.8
Q ss_pred eeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHh
Q 047682 858 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSA 937 (1425)
Q Consensus 858 vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~ 937 (1425)
+++..++|++++|+|+|||||||++..|++.... ..|+|.+.+.+.. | + ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~-----r------------~--~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTF-----R------------A--AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTT-----C------------H--HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccc-----c------------H--HHHHH-----
Confidence 4555679999999999999999999999985421 1234554433210 0 0 00111
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHH---HHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 047682 938 WLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 1014 (1425)
Q Consensus 938 ~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl---~ia~~L~~~p~illLDEPTsgLD~~~~ 1014 (1425)
+....+.+++.. ....|+|+.+++ +|++++..+|+++++|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 223344455532 124688999999 89999999999999999974 3344
Q ss_pred HHHHHHHHHH
Q 047682 1015 AIVMRTVRNT 1024 (1425)
Q Consensus 1015 ~~i~~~l~~~ 1024 (1425)
..+++.|+++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 282
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.41 E-value=6.3e-08 Score=118.61 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=108.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
.+.|+++.+-+++|++++|.|+||+|||||+..+++...+. .| ..+.|+.-+ ++..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~~ 245 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSAQ 245 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCHH
Confidence 45789999889999999999999999999999999876432 22 135555542 3433
Q ss_pred HHHHhh-hhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 214 ETLAFS-ARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 214 E~l~f~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
+...-. +...+.. .+ .+ . .+... .+. ..++...++.++.... .+-+ ..+
T Consensus 246 ~l~~r~~~~~~~~~--~~---~l----~-~g~l~---~~~------------~~~~~~a~~~l~~~~l---~i~d--~~~ 295 (454)
T 2r6a_A 246 QLVMRMLCAEGNIN--AQ---NL----R-TGKLT---PED------------WGKLTMAMGSLSNAGI---YIDD--TPS 295 (454)
T ss_dssp HHHHHHHHHHHTCC--HH---HH----H-TSCCC---HHH------------HHHHHHHHHHHHSSCE---EEEC--CTT
T ss_pred HHHHHHHHHHcCCC--HH---HH----h-cCCCC---HHH------------HHHHHHHHHHHhcCCE---EEEC--CCC
Confidence 322110 0000110 00 00 0 00000 000 1112233344433221 1211 235
Q ss_pred CChhhhhhHHHHHHHh--cCCcEeEEecCCCCCChH--------HHHHHHHHHHHHHHhcCCEEEEEEec----------
Q 047682 293 ISGGQRKRVTTGEMLV--GPALALFMDEISTGLDSS--------TTFQIVTSLRQIIHILNGTAVISLLQ---------- 352 (1425)
Q Consensus 293 LSGGqrqRvsia~al~--~~p~illLDEptsgLD~~--------t~~~i~~~L~~~~~~~~~t~ii~~~q---------- 352 (1425)
+|++|.+ +.++.++ .+|+++++|+++...+.. ....+.+.|+.+++..+.++|+ ++|
T Consensus 296 ~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~-~sql~r~~e~~~~ 372 (454)
T 2r6a_A 296 IRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIA-LSQLSRSVEQRQD 372 (454)
T ss_dssp CCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEE-EECCCTTSTTC--
T ss_pred CCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EecCCcccccCCC
Confidence 8999986 5666666 689999999999987532 3367788899998877666555 555
Q ss_pred --Ch-------hhHHhhcCeEEEEcCCeE
Q 047682 353 --PA-------PETYDLFDDIILISEGQI 372 (1425)
Q Consensus 353 --~~-------~~~~~~~D~vilL~~G~i 372 (1425)
|. ..+...+|.|++|..++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 146778999999987654
No 283
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.40 E-value=2.9e-07 Score=105.88 Aligned_cols=118 Identities=20% Similarity=0.125 Sum_probs=78.9
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHH
Q 047682 856 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLY 935 (1425)
Q Consensus 856 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~ 935 (1425)
+++++. +|++++++|+||+||||++..|++.... ..|+|.+.+.+.... .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~------------------~~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRP------------------AAR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCH------------------HHH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccH------------------hHH-HHH--
Confidence 578887 9999999999999999999999985321 124566655432110 000 111
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCC-CCCCCHHHH
Q 047682 936 SAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 1014 (1425)
Q Consensus 936 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEP-TsgLD~~~~ 1014 (1425)
..+.+..++..+... .+-+..+.+|..|+.+...+++++++||| ++|+|....
T Consensus 146 -------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 112233454332110 11344566788999988899999999999 999999888
Q ss_pred HHHHHHHHHH
Q 047682 1015 AIVMRTVRNT 1024 (1425)
Q Consensus 1015 ~~i~~~l~~~ 1024 (1425)
..+.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8887777655
No 284
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.37 E-value=2e-08 Score=109.01 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=49.2
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC---ccceEEEEccCCCCCCCCCHHHHHH
Q 047682 141 NGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV---PQRTAAYISQHDVHIGEMTVRETLA 217 (1425)
Q Consensus 141 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~ 217 (1425)
|+.+++|++++|+||||||||||+++|+|.++ .+.++|....... .+..++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999863 2455555443221 1346789999877666666665544
Q ss_pred h
Q 047682 218 F 218 (1425)
Q Consensus 218 f 218 (1425)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 3
No 285
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.34 E-value=1.3e-09 Score=124.87 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=54.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCc---cceEEEEccCC-CCCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVP---QRTAAYISQHD-VHIGEM 210 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 210 (1425)
.+++++++.+++| ++|+||||||||||+++|++... .|.|.++|.++.+... .+.+++++|+. ...+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 4799999999999 99999999999999999999875 6889998876532211 12345555542 234445
Q ss_pred CHHHHHH
Q 047682 211 TVRETLA 217 (1425)
Q Consensus 211 TV~E~l~ 217 (1425)
++.|++.
T Consensus 136 ~~iDeid 142 (278)
T 1iy2_A 136 VFIDEID 142 (278)
T ss_dssp EEEETHH
T ss_pred EehhhhH
Confidence 5555553
No 286
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.33 E-value=1.3e-07 Score=101.56 Aligned_cols=43 Identities=9% Similarity=0.109 Sum_probs=36.3
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHH
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQ 337 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~ 337 (1425)
|..-..+++.+|++++.+|+++++| ||++|.....++++.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4443445688999999999999999 999999999999988765
No 287
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.32 E-value=2e-09 Score=121.45 Aligned_cols=47 Identities=30% Similarity=0.512 Sum_probs=42.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 188 (1425)
.+++++++.+++| ++|+||||||||||+++|++... .|.|.++|.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~ 85 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 85 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHH
Confidence 4789999999999 99999999999999999999875 68899988764
No 288
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.30 E-value=1.3e-06 Score=100.56 Aligned_cols=45 Identities=24% Similarity=0.099 Sum_probs=39.4
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCcc
Q 047682 138 KDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187 (1425)
Q Consensus 138 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 187 (1425)
+++++. +|++++++|+|||||||++..|+|.+.+. .|+|.+.+.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d 135 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCC
Confidence 678887 99999999999999999999999998765 7888877654
No 289
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.29 E-value=9.2e-09 Score=125.70 Aligned_cols=165 Identities=11% Similarity=0.071 Sum_probs=91.5
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhhHHhhhcC----CCCCceEEEEEEEcCccCCcccccceEEEeecCCCCC-C-CCCHH
Q 047682 857 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHS-P-NVTVY 930 (1425)
Q Consensus 857 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g----~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~-~-~lTv~ 930 (1425)
.+++.+..+..++|.|++||||||++++|.. ..++ |++.+.+.+.+...+... ..-+.+. + --.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p----~~v~l~liDpK~~el~~~----~~lPhl~~~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP----EDVRFIMIDPKMLELSVY----EGIPHLLTEVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT----TTEEEEEECCSSSGGGGG----TTCTTBSSSCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC----ceEEEEEECCchhhhhhh----ccCCcccceeecCHH
Confidence 3677788899999999999999999999864 2222 233333333221111100 0001110 0 01122
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHH----------HHHHHHhhCCc-E
Q 047682 931 ESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRL----------TIAVELVANPS-I 999 (1425)
Q Consensus 931 E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl----------~ia~~L~~~p~-i 999 (1425)
+....-.++ .++.+++ .+.++..|+.++.+..-.. ...+|+||+||. .+++++...|. +
T Consensus 231 ~a~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 231 DAANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEE
Confidence 222111111 1222223 3677788877654321000 124678877652 35566677898 7
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC----CCEEEEEecCccH
Q 047682 1000 IFMDEPTSGLDARAAAIVMRTVRNTVDT----GRTVVCTIHQPSI 1040 (1425)
Q Consensus 1000 llLDEPTsgLD~~~~~~i~~~l~~~~~~----g~tvi~~~H~~~~ 1040 (1425)
+++||++.-+|.. ...+.+.+.++++. |.++|+++|+|+.
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 8999999998843 34556666655433 6799999999983
No 290
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.28 E-value=5.6e-07 Score=103.45 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=89.2
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP 942 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~ 942 (1425)
++|++++++|+||+||||++..|++..... .| +.+.++.+|.. ..+..|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~---- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE--KH---------------KKIAFITTDTY---RIAAVEQLKTYAE---- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT--TC---------------CCEEEEECCCS---STTHHHHHHHHHT----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh--cC---------------CEEEEEecCcc---cchHHHHHHHHHH----
Confidence 479999999999999999999999853210 12 13456666542 3455565543221
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 047682 943 PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022 (1425)
Q Consensus 943 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~ 1022 (1425)
..++... ...+. ..-+.+|+ .+.+|+++++| |+|+|+.....+.++.+
T Consensus 159 -----------------~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 159 -----------------LLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp -----------------TTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred -----------------hcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 1222110 01222 22344454 45999999999 99999876655554443
Q ss_pred HHH---hCCCEEEE-EecCccHHHHHhcCEEEEEeCCcEEEEECCCC-CCchhHHHHHhhC
Q 047682 1023 NTV---DTGRTVVC-TIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG-RHSSHLISYFEAI 1078 (1425)
Q Consensus 1023 ~~~---~~g~tvi~-~~H~~~~~~~~~fD~v~~l~~Gg~~~y~G~~~-~~~~~~~~yf~~~ 1078 (1425)
-+. ..+.++|+ ++|... ++.+.+|++-.+..+| ++...-.+ .....+++.-...
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~g-iVltk~D~~~~~g~~~~~~~~~ 265 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQ-YIFTKIDETTSLGSVFNILAES 265 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCE-EEEECTTTCSCCHHHHHHHHTC
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCE-EEEeCCCcccchhHHHHHHHHH
Confidence 322 11334444 478764 5666677665566554 44433211 1123455555444
No 291
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.28 E-value=7.2e-08 Score=103.57 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 047682 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024 (1425)
Q Consensus 985 qRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~ 1024 (1425)
+...+|++++.+|+++++| ||++|......+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4577899999999999999 9999999999999888653
No 292
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.27 E-value=1.6e-07 Score=114.88 Aligned_cols=165 Identities=13% Similarity=0.038 Sum_probs=89.9
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHhc--CCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCC--CHHHH
Q 047682 140 VNGIVKPSRLTLLLGPPASGKTTLLLALAG--KLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEM--TVRET 215 (1425)
Q Consensus 140 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G--~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E~ 215 (1425)
+++.+..+..++|.|++||||||+|+.|.. ....+ .|+|.+.+.+...... +.-..+|.+ +|.++
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el--------~~~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLEL--------SVYEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGG--------GGGTTCTTBSSSCBCS
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhh--------hhhccCCcccceeecC
Confidence 677888899999999999999999999875 33333 4666655444322100 000001111 11112
Q ss_pred HHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc--cccCcccccC
Q 047682 216 LAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADT--MVGDEMLRGI 293 (1425)
Q Consensus 216 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t--~vg~~~~~~L 293 (1425)
...+. +++.....+.+.+. ..++..|+.+..+. .+. ..+
T Consensus 229 ~~~a~----------------------------------~~L~~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~----~~~ 269 (512)
T 2ius_A 229 MKDAA----------------------------------NALRWCVNEMERRY-KLMSALGVRNLAGYNEKIA----EAD 269 (512)
T ss_dssp HHHHH----------------------------------HHHHHHHHHHHHHH-HHHHHTTCSSHHHHHHHHH----HHH
T ss_pred HHHHH----------------------------------HHHHHHHHHHHHHH-HHHHHcCCccHHHHHHHHH----HHh
Confidence 21111 11111111223332 45677777654321 121 248
Q ss_pred ChhhhhhH----------HHHHHHhcCCc-EeEEecCCCCCChHHHHHHHHHHHHHHHhcC--CEEEEEEecChh
Q 047682 294 SGGQRKRV----------TTGEMLVGPAL-ALFMDEISTGLDSSTTFQIVTSLRQIIHILN--GTAVISLLQPAP 355 (1425)
Q Consensus 294 SGGqrqRv----------sia~al~~~p~-illLDEptsgLD~~t~~~i~~~L~~~~~~~~--~t~ii~~~q~~~ 355 (1425)
||||+||. .+++++...|. ++++||++.-+|.. ...+.+.+.++++..+ +..++..+|...
T Consensus 270 s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 270 RMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999874 24556677887 89999999998843 3455566666554322 334444555543
No 293
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.25 E-value=1.1e-06 Score=103.39 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=27.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+-+++|+++.|.||||||||||+..++....
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999888886543
No 294
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.24 E-value=1.2e-09 Score=124.99 Aligned_cols=123 Identities=17% Similarity=0.197 Sum_probs=80.0
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc---cccceEEEeecCCC-CCCCCC
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE---TFARISGYCEQNDI-HSPNVT 928 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~-~~~~lT 928 (1425)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+.... ...+.+++++|... ..+.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 5788999999999 99999999999999999998653 46778887543211 11233456677643 456778
Q ss_pred HHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcE
Q 047682 929 VYESLLYSAWLRLPP-DVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 999 (1425)
Q Consensus 929 v~E~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~i 999 (1425)
+.|++......+... ....++..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 888775332211100 001122222333332 24899999999999999999876
No 295
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.23 E-value=9.7e-07 Score=103.48 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=33.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEE-EECCc
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRV-TYNGH 186 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V-~~~G~ 186 (1425)
+-+++|+++.|.||||||||||+..+++...+. .|.| ++++.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E 98 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAE 98 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecc
Confidence 368999999999999999999999999887543 4544 44443
No 296
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.23 E-value=4.6e-08 Score=106.16 Aligned_cols=67 Identities=24% Similarity=0.168 Sum_probs=42.4
Q ss_pred eEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHH
Q 047682 859 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ---ETFARISGYCEQNDIHSPNVTVYE 931 (1425)
Q Consensus 859 s~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E 931 (1425)
|+.+++|++++|+||||||||||+++|+|... .+.+++..... ...++.++|++|++..++.+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEG 70 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHT
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcC
Confidence 56678999999999999999999999999642 24444433221 112345688888765444444433
No 297
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.21 E-value=1.6e-09 Score=122.13 Aligned_cols=127 Identities=17% Similarity=0.208 Sum_probs=80.9
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc---cccceEEEeecCC-CCCCCCC
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE---TFARISGYCEQND-IHSPNVT 928 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~-~~~~~lT 928 (1425)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|.. ...+.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4788999999999 99999999999999999998653 45677877543211 1122345666654 3456777
Q ss_pred HHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 047682 929 VYESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1005 (1425)
Q Consensus 929 v~E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEP 1005 (1425)
+.|++......+.. .....++..+.+.+++ ..|||||+||+.|++++..+|++ +|++
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 77777433222211 0011122223333333 24789999999999999999987 4543
No 298
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.21 E-value=2.5e-08 Score=126.57 Aligned_cols=160 Identities=14% Similarity=0.099 Sum_probs=97.4
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCC--------
Q 047682 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDI-------- 922 (1425)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~-------- 922 (1425)
...++++++..+++|+.++|+||||+|||||+++|++..... ..|.+.+++.+... ....++|+++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHH
Confidence 345889999999999999999999999999999999965432 23778887766432 3345788876431
Q ss_pred --------------CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHH
Q 047682 923 --------------HSPNVTVYESLLYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLT 988 (1425)
Q Consensus 923 --------------~~~~lTv~E~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ 988 (1425)
.+..+++.+|+.....-..+...-.+ . ....-+.+|........ ..++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T---GAHAGALLGDVRHDPFQ-----SGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T---TCCHHHHHCEECCCCC---------CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C---CCCHHhcCceEEechhh-----cCCcccccccccc
Confidence 11112222221100000000000000 0 00011122221111111 1469999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 047682 989 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1023 (1425)
Q Consensus 989 ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~ 1023 (1425)
.++...+++.+|||||... |++.....+.+.|++
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999998 899888888888864
No 299
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.17 E-value=4.6e-07 Score=100.46 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=23.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh-cCCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALA-GKLDP 173 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~-G~~~~ 173 (1425)
+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4789999999999999999999999999999999 99753
No 300
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.14 E-value=2.1e-07 Score=113.05 Aligned_cols=51 Identities=20% Similarity=0.129 Sum_probs=44.6
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCC
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKK 906 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~ 906 (1425)
.+|+|+|++|++ ++++|+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEcc
Confidence 479999999999 99999999999999999999996542 3688999998753
No 301
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.12 E-value=7.7e-08 Score=105.85 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=40.6
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-----------ccceEEEEccC
Q 047682 141 NGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-----------PQRTAAYISQH 203 (1425)
Q Consensus 141 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----------~~~~~~yv~Q~ 203 (1425)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 899999999999999999999999998 899999998763211 13568888873
No 302
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.07 E-value=3e-06 Score=100.27 Aligned_cols=158 Identities=16% Similarity=0.094 Sum_probs=87.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-------C-CcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH---HHHH
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLDPS-------L-KLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR---ETLA 217 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~~~-------~-~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~---E~l~ 217 (1425)
.++|+|+||||||||++.|+|..... . ..+|.|.++|.++. ...+.|++.|.+. ..|. .++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHHHHHH
Confidence 48999999999999999999986411 0 23789999886431 1123455544221 1121 1111
Q ss_pred hhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 047682 218 FSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRGISGGQ 297 (1425)
Q Consensus 218 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 297 (1425)
..... +.+..+. | . .+++.+. .+....+..+++.+++.+..--.|+++. .-+|+|+
T Consensus 254 ~~~~a-------D~il~Vv----D--~-s~~~~~~---------~~~~~~~~~~L~~l~~~~~p~ilV~NK~-Dl~~~~~ 309 (364)
T 2qtf_A 254 EAKYS-------DALILVI----D--S-TFSENLL---------IETLQSSFEILREIGVSGKPILVTLNKI-DKINGDL 309 (364)
T ss_dssp GGGGS-------SEEEEEE----E--T-TSCHHHH---------HHHHHHHHHHHHHHTCCSCCEEEEEECG-GGCCSCH
T ss_pred HHHhC-------CEEEEEE----E--C-CCCcchH---------HHHHHHHHHHHHHhCcCCCCEEEEEECC-CCCCchH
Confidence 11000 0000000 0 0 0010000 0111234567788887665433445442 2378888
Q ss_pred hhhHHHH----HHH-hcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHh
Q 047682 298 RKRVTTG----EML-VGPALALFMDEISTGLDSSTTFQIVTSLRQIIHI 341 (1425)
Q Consensus 298 rqRvsia----~al-~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~ 341 (1425)
++|+.++ +.+ ..++++ +|+|++|......+.+.|.+....
T Consensus 310 ~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 310 YKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp HHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence 8888887 555 334444 899999999999999988876543
No 303
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.05 E-value=3.2e-06 Score=103.03 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCcc
Q 047682 981 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 1039 (1425)
Q Consensus 981 gGqrqRl~ia~~L~~~p~illLDEP----------TsgLD~~~~~~i~~~l~~~~----~~g~tvi~~~H~~~ 1039 (1425)
+++++|-.++.+....|.|||+||+ ++|.|......+.++++.+- +.+..||+++|+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44777777777777777663 24678999999985
No 304
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.02 E-value=2.3e-06 Score=92.32 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 047682 987 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025 (1425)
Q Consensus 987 l~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~ 1025 (1425)
...|++++.+|+++++| ||++|......+.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999988887653
No 305
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.94 E-value=4.1e-07 Score=98.52 Aligned_cols=71 Identities=14% Similarity=0.077 Sum_probs=50.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC--ccceEEEEccCCCCCCCCCHHHHHHhh
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMTVRETLAFS 219 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 219 (1425)
+..++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++|+....+.+++.+++...
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 96 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDA 96 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHH
Confidence 556789999999999999999999999975 77889987764321 112457888876555566677766543
No 306
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.94 E-value=6.5e-06 Score=88.68 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=33.1
Q ss_pred hHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHH
Q 047682 300 RVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQII 339 (1425)
Q Consensus 300 Rvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~ 339 (1425)
....|++++.+|++.++| ||++|.....++++.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 456799999999999999 99999999999998887653
No 307
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.93 E-value=2.4e-06 Score=94.58 Aligned_cols=38 Identities=32% Similarity=0.253 Sum_probs=22.9
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhc-CCCC
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKT 890 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~-g~~~ 890 (1425)
+..+++|+++++|++++|+||||||||||+++|+ |...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5678999999999999999999999999999999 8753
No 308
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.93 E-value=8.7e-06 Score=95.42 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=26.5
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+-+++|+++.|.||+|+|||||+..+++.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999999999874
No 309
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.92 E-value=4.4e-06 Score=98.84 Aligned_cols=151 Identities=14% Similarity=0.097 Sum_probs=85.9
Q ss_pred CCeE-EEEEcCCCCChhhHHhhhcCCCCC---------ceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH--
Q 047682 864 PGVL-TALMGVSGAGKTTLMDVLAGRKTG---------GYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYE-- 931 (1425)
Q Consensus 864 ~Ge~-~al~G~sGaGKTTLl~~l~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E-- 931 (1425)
.|-. ++|+|++|||||||+|.|+|.... +...|.+.++|.+.. +....|++.+.+ ...|..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHH
Confidence 3444 999999999999999999995421 134688888885431 122345544322 111211
Q ss_pred -HHHHHh--h--c--cCCCCCC--HHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHH----HHH-hhCC
Q 047682 932 -SLLYSA--W--L--RLPPDVD--SETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA----VEL-VANP 997 (1425)
Q Consensus 932 -~l~~~~--~--l--r~~~~~~--~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia----~~L-~~~p 997 (1425)
.+.... . + .-..+.. ..+..+.+.++++.+++.+..--.+++. ..-+|+|+++|+.++ +++ ..+|
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 111100 0 0 0001111 1222334567788777655432222322 334788888888887 444 3344
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 047682 998 SIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026 (1425)
Q Consensus 998 ~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1026 (1425)
++ +|||++|......+.+.|.+...
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 44 89999999999999999887653
No 310
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.91 E-value=1.6e-05 Score=96.87 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=38.4
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecC----------CCCCChHHHHHHHHHHHHHHH--hcCCEEEEEEecCh
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEI----------STGLDSSTTFQIVTSLRQIIH--ILNGTAVISLLQPA 354 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEp----------tsgLD~~t~~~i~~~L~~~~~--~~~~t~ii~~~q~~ 354 (1425)
|+++.|..+++|....|.|+|+||+ ++|.|......+.+.|..+-. ...+.+||..++..
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 5678888899999999999999999 346776665555555555421 12355666666654
No 311
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.82 E-value=7.3e-06 Score=86.94 Aligned_cols=36 Identities=25% Similarity=0.170 Sum_probs=33.1
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047682 138 KDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPS 174 (1425)
Q Consensus 138 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 174 (1425)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6889999999 99999999999999999999987664
No 312
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.80 E-value=8.3e-07 Score=96.07 Aligned_cols=40 Identities=30% Similarity=0.264 Sum_probs=31.3
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
...++|++++|+||||||||||+++|++.. |.+.++|.+.
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~ 63 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAF 63 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGG
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEccccc
Confidence 456789999999999999999999999853 5677887654
No 313
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.79 E-value=6.6e-06 Score=106.81 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=58.6
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCccHHHHHhcCEEEEE
Q 047682 976 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFEAFDELFLM 1052 (1425)
Q Consensus 976 ~~~lSgGqrqRl~ia~~L~~~p~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~-~H~~~~~~~~~fD~v~~l 1052 (1425)
+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++|+++ ||++. ++.+.+++.-++
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi 265 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLL 265 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEE
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcc
Confidence 34589999999999999999999999999996 999887777766666554445677775 88764 566777643333
No 314
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.75 E-value=1.7e-05 Score=92.25 Aligned_cols=126 Identities=13% Similarity=0.176 Sum_probs=79.5
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESL 933 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l 933 (1425)
-|+.+.+-++||+++.|.|++|+|||||+.-++..... .|. .+.|+. ..++..+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g~---------~Vl~fS------lEms~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DDR---------GVAVFS------LEMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TTC---------EEEEEE------SSSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cCC---------eEEEEe------CCCCHHHHH
Confidence 45666667899999999999999999998888753110 111 123322 123333322
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 047682 934 LYSAWLRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1013 (1425)
Q Consensus 934 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~ 1013 (1425)
.++......+++.++++ | .||.++.+|+..|...+.++++.+.|+|...+
T Consensus 91 ------------------~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si---- 140 (338)
T 4a1f_A 91 ------------------LRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI---- 140 (338)
T ss_dssp ------------------HHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH----
T ss_pred ------------------HHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH----
Confidence 11111222222222222 1 49999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHhC--CCEEEEE
Q 047682 1014 AAIVMRTVRNTVDT--GRTVVCT 1034 (1425)
Q Consensus 1014 ~~~i~~~l~~~~~~--g~tvi~~ 1034 (1425)
..|...++++.++ |..+|++
T Consensus 141 -~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 141 -EQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp -HHHHHHHHHHHHHCTTEEEEEE
T ss_pred -HHHHHHHHHHHHhcCCCCEEEE
Confidence 3555666666543 5666666
No 315
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.75 E-value=8.2e-06 Score=88.31 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=28.2
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKLDPS 174 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 174 (1425)
++++|++++|+||||||||||+++|++.+.|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998654
No 316
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.71 E-value=4.8e-06 Score=96.67 Aligned_cols=81 Identities=12% Similarity=0.009 Sum_probs=62.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCC-------c-----cceEEEE-cc
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFV-------P-----QRTAAYI-SQ 202 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~-----~~~~~yv-~Q 202 (1425)
+++++|+.+++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998776 789998877653211 1 3468889 77
Q ss_pred CCCCCCCCCHHHHHHhh
Q 047682 203 HDVHIGEMTVRETLAFS 219 (1425)
Q Consensus 203 ~d~~~~~lTV~E~l~f~ 219 (1425)
.....|..++.+++..+
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555555677777654
No 317
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.71 E-value=1.1e-06 Score=98.81 Aligned_cols=75 Identities=17% Similarity=0.079 Sum_probs=52.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh---cCCCCCCCcccEEE--------ECCccCCCCC----ccceEEEE
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALA---GKLDPSLKLSGRVT--------YNGHNMDEFV----PQRTAAYI 200 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~--------~~G~~~~~~~----~~~~~~yv 200 (1425)
++++.+ ++|++++|+|||||||||++++|+ |...++ +|.+. .+|.++.+.. ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 445544 789999999999999999999999 988877 89998 8898774322 13567888
Q ss_pred ccCC-----CCCCCCCHHHHH
Q 047682 201 SQHD-----VHIGEMTVRETL 216 (1425)
Q Consensus 201 ~Q~d-----~~~~~lTV~E~l 216 (1425)
+|.+ ..+...+|.+++
T Consensus 93 ~~~~~~~~~~~l~~~~v~~~i 113 (252)
T 4e22_A 93 FVSQNGQLQVILEGEDVSNEI 113 (252)
T ss_dssp EEEETTEEEEEETTEECTTGG
T ss_pred EecCCCCceEEECCeehhHHH
Confidence 8743 233444555543
No 318
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.71 E-value=3e-05 Score=90.25 Aligned_cols=129 Identities=17% Similarity=0.196 Sum_probs=82.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 212 (1425)
..+-|+.+.+-++||+++.|.|+||+|||||+.-++..... .| ..+.|++= +++.
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g---------~~Vl~fSl------Ems~ 86 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD---------RGVAVFSL------EMSA 86 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT---------CEEEEEES------SSCH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC---------CeEEEEeC------CCCH
Confidence 34568888888999999999999999999999988865431 11 24556543 3444
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLDVCADTMVGDEMLRG 292 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 292 (1425)
.+-.. |+. . ....+.+....+ | .
T Consensus 87 ~ql~~---Rll-------------s---------------------------------~~~~v~~~~l~~---g-----~ 109 (338)
T 4a1f_A 87 EQLAL---RAL-------------S---------------------------------DLTSINMHDLES---G-----R 109 (338)
T ss_dssp HHHHH---HHH-------------H---------------------------------HHHCCCHHHHHH---T-----C
T ss_pred HHHHH---HHH-------------H---------------------------------HhhCCCHHHHhc---C-----C
Confidence 43322 100 0 000000100000 2 3
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEE
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVI 348 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii 348 (1425)
||+++++|++.|...+.++++++.|+|... ..+|...++++.+..++..+|
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lI 160 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIA 160 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEE
Confidence 999999999999999999999999998643 336666777776554244444
No 319
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.70 E-value=8.4e-05 Score=87.86 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=47.7
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCcc
Q 047682 977 SGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQPS 1039 (1425)
Q Consensus 977 ~~lSgGqrqRl~ia~~L~~~p~illLD-EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~--H~~~ 1039 (1425)
..+|++|+|++. +.+...++-++++| +|++|+|......+.+.+++... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998876 55556677789999 99999999988888887776643 67777777 7653
No 320
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.69 E-value=9.1e-06 Score=86.74 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 578999999999999999999999864
No 321
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.67 E-value=6.1e-05 Score=87.42 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=29.6
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcC
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
-|+++.+-+++|+++.|.|++|+|||||+.-++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4666777799999999999999999999887774
No 322
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.67 E-value=8.8e-07 Score=108.57 Aligned_cols=49 Identities=31% Similarity=0.496 Sum_probs=42.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDE 190 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 190 (1425)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.+.++|.++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 3688999999999 99999999999999999999874 6889999877643
No 323
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.66 E-value=7.8e-07 Score=97.83 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=37.6
Q ss_pred eEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCc-----------ccccceEEEeecC
Q 047682 859 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQ-----------ETFARISGYCEQN 920 (1425)
Q Consensus 859 s~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~Q~ 920 (1425)
++++.+ ++++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455566 89999999999999999999996442 24677777765411 1134568898884
No 324
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.63 E-value=2.4e-06 Score=92.38 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=42.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEE--EECCccCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRV--TYNGHNMD 189 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V--~~~G~~~~ 189 (1425)
.+..++++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 445566677778999999999999999999999999986 3 6777 88876553
No 325
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.56 E-value=2.7e-05 Score=84.03 Aligned_cols=39 Identities=28% Similarity=0.088 Sum_probs=25.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
...+++|||+.+++|+.++|+|||||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346899999999999999999999999999999999876
No 326
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.55 E-value=5.1e-05 Score=98.53 Aligned_cols=73 Identities=12% Similarity=0.111 Sum_probs=55.8
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCC-CCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeE
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEIST-GLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEpts-gLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 364 (1425)
.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ..++++++.+++...+.+++++.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 3489999999999999999999999999996 9998877666666554321 22455566677777777788753
No 327
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.50 E-value=6.3e-06 Score=92.13 Aligned_cols=52 Identities=25% Similarity=0.367 Sum_probs=35.3
Q ss_pred eEEEecc-eeeeecchhhhhccccCCceeeeeceeEEEeC---CeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 826 SLTFEDV-VYSVDMPQEMKLQGVLDDKLVLLNGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 826 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.+.++|+ ++.++ +...+|+|+|+.|++ |+.++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3677887 76551 124589999999999 9999999999999999999999743
No 328
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.46 E-value=3.2e-05 Score=82.08 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYN 184 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~ 184 (1425)
+|++++|+||||||||||++.|++.+++. ..|.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 68999999999999999999999987642 25655443
No 329
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.41 E-value=7.6e-07 Score=109.13 Aligned_cols=129 Identities=17% Similarity=0.195 Sum_probs=80.1
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcc---cccceEEEeecCCC-CCCCCC
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQE---TFARISGYCEQNDI-HSPNVT 928 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~-~~~~lT 928 (1425)
.+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+.... ...+.++.++|... ..|.++
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 3678899999999 99999999999999999998643 35677887653221 01122344555432 344555
Q ss_pred HHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 047682 929 VYESLLYSAWLRLP-PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007 (1425)
Q Consensus 929 v~E~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTs 1007 (1425)
+.|++......+.. .....++..+.+.+++. .+||||+|+..|+++...+|++ |||+.-
T Consensus 128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 55555321111110 00112333334444443 3678888888888888889987 788764
No 330
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.39 E-value=2.4e-05 Score=84.71 Aligned_cols=70 Identities=6% Similarity=0.043 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHH-HHHhcCEEEEEe
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID-IFEAFDELFLMK 1053 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~-~~~~fD~v~~l~ 1053 (1425)
+.|+.+|..++..+..+|+.+.++ ++.+++.....+.+.+++. .+.+||+.+|..... ....||.++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 678888999998888888654333 3345666555555544432 356888888875421 245789998886
No 331
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.39 E-value=0.00016 Score=83.33 Aligned_cols=151 Identities=19% Similarity=0.224 Sum_probs=79.6
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCCCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPPD 944 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~~~ 944 (1425)
+..++|+|++|+|||||++.|.|.... + ..+.+ +.+..+..|++.+++..+ ++.| .| .
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~------i-~s~~~--~tTr~~~~gi~~~~~~~i---~~iD---------Tp-G 65 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKIS------I-TSRKA--QTTRHRIVGIHTEGAYQA---IYVD---------TP-G 65 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEE------E-CCCCS--SCCSSCEEEEEEETTEEE---EEES---------SS-S
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcc------c-cCCCC--CcceeeEEEEEEECCeeE---EEEE---------Cc-C
Confidence 348999999999999999999986420 1 11222 122345667777764321 1000 11 1
Q ss_pred CCHHHHHHHHHHHH-----HHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCCCCHHH-HHH
Q 047682 945 VDSETRRMFLEEIM-----ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AAI 1016 (1425)
Q Consensus 945 ~~~~~~~~~v~~~l-----~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~--~~p~illLDEPTsgLD~~~-~~~ 1016 (1425)
...+.. ...++.+ +.+.-.+..-..+ +... +|.|++ .+++.+. ..|.++++ |.+|... ...
T Consensus 66 ~~~~~~-~~l~~~~~~~~~~~l~~~D~vl~Vv--d~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~ 134 (301)
T 1ega_A 66 LHMEEK-RAINRLMNKAASSSIGDVELVIFVV--EGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKAD 134 (301)
T ss_dssp CCHHHH-HHHHHHHTCCTTSCCCCEEEEEEEE--ETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHH
T ss_pred CCccch-hhHHHHHHHHHHHHHhcCCEEEEEE--eCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHH
Confidence 110000 0111111 0111111111111 1123 899887 4566666 67999998 8999876 667
Q ss_pred HHHHHHHHHhC-CC--EEEEEecCccHHHHHhcCEE
Q 047682 1017 VMRTVRNTVDT-GR--TVVCTIHQPSIDIFEAFDEL 1049 (1425)
Q Consensus 1017 i~~~l~~~~~~-g~--tvi~~~H~~~~~~~~~fD~v 1049 (1425)
+.+.++++.+. |. ++.+++|+-. .+.+++|.+
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i 169 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIV 169 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHH
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHH
Confidence 77888887654 43 4555666543 344444443
No 332
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.37 E-value=0.00026 Score=84.19 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=35.6
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCcc
Q 047682 995 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 1039 (1425)
Q Consensus 995 ~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~---~g~tvi~~~H~~~ 1039 (1425)
.+|.+|++||+..- |......+.+.+.+... .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888776655 5778999999974
No 333
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.37 E-value=0.00027 Score=81.96 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=79.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 047682 133 KFTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTV 212 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 212 (1425)
..+-|+++.+-+++|+++.|.|+||+|||||+.-++...-. .| ..+.|++-+ ++.
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g---------------~~vl~~slE------~s~ 108 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----ND---------------DVVNLHSLE------MGK 108 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TT---------------CEEEEEESS------SCH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC---------------CeEEEEECC------CCH
Confidence 34568888888999999999999999999999888754321 12 146666542 444
Q ss_pred HHHHHhhhhhcCCCCcchhhhHhhHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc--ccccccccCccc
Q 047682 213 RETLAFSARCQGVGSRYDMLVELSRREKDANIKPDPDIDVFMKALATEGQEASVVTDYVIKVLGLD--VCADTMVGDEML 290 (1425)
Q Consensus 213 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~t~vg~~~~ 290 (1425)
.+...-.... ..|++ +..+ |.
T Consensus 109 ~~l~~R~~~~---------------------------------------------------~~~i~~~~l~~---~~--- 131 (315)
T 3bh0_A 109 KENIKRLIVT---------------------------------------------------AGSINAQKIKA---AR--- 131 (315)
T ss_dssp HHHHHHHHHH---------------------------------------------------HTTCCHHHHHS---CH---
T ss_pred HHHHHHHHHH---------------------------------------------------HcCCCHHHHhc---CC---
Confidence 4433210000 00110 0000 00
Q ss_pred ccCChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcC
Q 047682 291 RGISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILN 343 (1425)
Q Consensus 291 ~~LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~ 343 (1425)
..||+++++|+..|...+.++++++.|+|... ..++.+.++++.+..+
T Consensus 132 ~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~ 179 (315)
T 3bh0_A 132 RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNP 179 (315)
T ss_dssp HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcC
Confidence 13899999999999888888999999988632 3456666676655444
No 334
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.37 E-value=5.9e-05 Score=81.30 Aligned_cols=39 Identities=28% Similarity=0.132 Sum_probs=24.3
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 851 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 851 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
....++|||+.+++|++++|+|++||||||+.+.|++..
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346899999999999999999999999999999999643
No 335
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.34 E-value=5e-05 Score=97.02 Aligned_cols=29 Identities=34% Similarity=0.319 Sum_probs=25.1
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+.+++|..++|+|++|+|||||++.|++.
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHh
Confidence 45678999999999999999999999963
No 336
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.33 E-value=2.3e-05 Score=92.83 Aligned_cols=43 Identities=30% Similarity=0.407 Sum_probs=31.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCcccEEE
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGK--LDPSLKLSGRVT 182 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~--~~~~~~~~G~V~ 182 (1425)
..+|+++++.++ .++|+|++|||||||+++|+|. ++.. +|.++
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~---~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRG---SGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCC---SSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCC---CCccc
Confidence 358999999998 8999999999999999999994 4544 55544
No 337
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.32 E-value=1.6e-05 Score=88.95 Aligned_cols=40 Identities=40% Similarity=0.413 Sum_probs=36.3
Q ss_pred cceeeeceEEEEeC---CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 133 KFTILKDVNGIVKP---SRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 133 ~~~iL~~vs~~i~~---G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
..++|+|+|+.+++ |+.++|+|++||||||+.++|++.+.
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34689999999999 99999999999999999999998753
No 338
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.31 E-value=6.8e-05 Score=82.84 Aligned_cols=39 Identities=21% Similarity=0.115 Sum_probs=34.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccC
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 188 (1425)
..++|++++|.|+||||||||+++|+|. .|+|.+.|.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 4578999999999999999999999997 47788887654
No 339
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.29 E-value=8e-05 Score=78.82 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=29.3
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 856 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 856 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+++++.+.+| +++|+||||||||||+++|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999 9999999999999999999863
No 340
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.29 E-value=0.00081 Score=77.03 Aligned_cols=70 Identities=24% Similarity=0.274 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCcc---HHH
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDI 1042 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~----------~~~~i~~~l~~~~~----~g~tvi~~~H~~~---~~~ 1042 (1425)
+++++.|..++.+...+|.+||+||+.+-++.. ....++..+..... .+..||+++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777788888899999999998776532 22233333333211 2346788999764 234
Q ss_pred HHhcCEE
Q 047682 1043 FEAFDEL 1049 (1425)
Q Consensus 1043 ~~~fD~v 1049 (1425)
...||+.
T Consensus 177 ~~R~~~~ 183 (297)
T 3b9p_A 177 LRRFTKR 183 (297)
T ss_dssp HHHCCEE
T ss_pred HhhCCeE
Confidence 4455543
No 341
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.28 E-value=0.0003 Score=83.23 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 047682 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 1036 (1425)
Q Consensus 979 lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H 1036 (1425)
-++.++++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| +||++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777764333445433 44456666665555 57766665
No 342
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.24 E-value=0.00084 Score=78.73 Aligned_cols=140 Identities=13% Similarity=0.085 Sum_probs=74.8
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhc
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWL 939 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~l 939 (1425)
+-+++|+++.|.||+|+|||||+..++....-... .+|. ...+.|+.-+..+ ....-......+
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~-----~gg~-------~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGA-----GGYP-------GGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBT-----TTBC-------CCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccc-----cCCC-------CCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 56899999999999999999999988763110000 0000 0123344333221 222222222221
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH-HHHHHHHHHHHh----hCCcEEEEeCCCCCCCHH--
Q 047682 940 RLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELV----ANPSIIFMDEPTSGLDAR-- 1012 (1425)
Q Consensus 940 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG-qrqRl~ia~~L~----~~p~illLDEPTsgLD~~-- 1012 (1425)
. .+. +++++.+-+ .+ ..++. +.+.+..++.++ .+++++++|+.++-.+..
T Consensus 181 g----~~~-------~~~l~~l~~---~~---------~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~ 237 (343)
T 1v5w_A 181 N----VDH-------DAVLDNVLY---AR---------AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 237 (343)
T ss_dssp T----CCH-------HHHHHTEEE---EE---------CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC
T ss_pred C----CCH-------HHHHhceeE---ee---------cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc
Confidence 1 111 123332211 11 12333 234555666666 568999999999866432
Q ss_pred ----------HHHHHHHHHHHHHhC-CCEEEEEecCc
Q 047682 1013 ----------AAAIVMRTVRNTVDT-GRTVVCTIHQP 1038 (1425)
Q Consensus 1013 ----------~~~~i~~~l~~~~~~-g~tvi~~~H~~ 1038 (1425)
....+++.|++++++ |.+||++.|-.
T Consensus 238 ~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 238 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 124555566666644 88999988854
No 343
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.22 E-value=0.00014 Score=79.05 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=27.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999875
No 344
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.18 E-value=7.8e-05 Score=80.52 Aligned_cols=41 Identities=24% Similarity=0.105 Sum_probs=34.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCcc
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 187 (1425)
.++|++++|+|+||||||||++.|++.+.+. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 4688999999999999999999999998765 6777766543
No 345
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.18 E-value=2.8e-05 Score=87.25 Aligned_cols=57 Identities=23% Similarity=0.138 Sum_probs=42.9
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhc---CCCCCceEEEEEE--------EcCccCCc----ccccceEEEeecCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNIK--------ISGYPKKQ----ETFARISGYCEQND 921 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gyv~Q~~ 921 (1425)
++|++++|+|||||||||++++|+ |... +..|.+. .+|.+... ...++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 689999999999999999999999 7643 3457777 77776532 23445678888754
No 346
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.18 E-value=0.00066 Score=73.30 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=36.7
Q ss_pred CChhhhhhHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhH--HhhcCeEEEEc
Q 047682 293 ISGGQRKRVTTGEMLVGPALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPET--YDLFDDIILIS 368 (1425)
Q Consensus 293 LSGGqrqRvsia~al~~~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~--~~~~D~vilL~ 368 (1425)
.+.|+.+|..+++.+..+|+.+.++ .+.+++.....+.+.++.. .++.+|+ -.+...+. ...||.+++|+
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~-~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLF-VVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEE-ECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEE-EechhhhcCcHhhCCEEEEEE
Confidence 3678899999999988888654333 3345555544444433321 2344444 33444343 56788887773
No 347
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.18 E-value=4.3e-05 Score=88.66 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=38.1
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
+++++++.+++|++++|+|+||+||||++..|++.... ..|+|.+.+.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~ 143 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADT 143 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 34689999999999999999999999999999985321 135666665543
No 348
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.17 E-value=0.00013 Score=78.23 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=26.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.+|++++|+||||||||||++.|++..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999999875
No 349
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.17 E-value=9.1e-05 Score=78.92 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCCCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGRKT 890 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~~~ 890 (1425)
|++++|+||||||||||+++|+|...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999653
No 350
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.16 E-value=0.00012 Score=79.06 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=25.8
Q ss_pred EEeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 861 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 861 ~i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
++++|++++|+|||||||||++++|++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999999999875
No 351
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.16 E-value=5.2e-05 Score=89.68 Aligned_cols=44 Identities=34% Similarity=0.362 Sum_probs=39.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTY 183 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 183 (1425)
..+|+++|+.+++|++++|+||||||||||+++|+|.. +|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 35899999999999999999999999999999999864 577655
No 352
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.16 E-value=6.2e-05 Score=83.19 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=33.5
Q ss_pred eEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccC
Q 047682 859 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPK 905 (1425)
Q Consensus 859 s~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~ 905 (1425)
++..++|++++|.|+||||||||+++|+|. .|+|.+.+.|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 344579999999999999999999999986 24577777653
No 353
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.16 E-value=0.00012 Score=77.62 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEE
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKI 900 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i 900 (1425)
+|++++|+||||||||||++.|++.... ...|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeec
Confidence 7899999999999999999999985432 13444444
No 354
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.16 E-value=0.00013 Score=76.57 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=30.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCcc
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 187 (1425)
.+|++++|+|||||||||+++.|++.+ |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcc
Confidence 468999999999999999999999874 667777654
No 355
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.15 E-value=0.00088 Score=79.08 Aligned_cols=56 Identities=5% Similarity=0.131 Sum_probs=41.4
Q ss_pred cCChhhhhhHHHHHHHhcCCcEeEEe-cCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEE
Q 047682 292 GISGGQRKRVTTGEMLVGPALALFMD-EISTGLDSSTTFQIVTSLRQIIHILNGTAVISL 350 (1425)
Q Consensus 292 ~LSGGqrqRvsia~al~~~p~illLD-EptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~ 350 (1425)
.+|+||++++. +.+...++-++++| ++.+|+|......+++.+..... +..++++.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 48999988876 55556788899999 99999999888777776665432 44555543
No 356
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.10 E-value=0.0016 Score=75.73 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=29.7
Q ss_pred eeeceE-EEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 136 ILKDVN-GIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 136 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.|+.+- +-+++|+++.|.||||||||||+..++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 344432 579999999999999999999999988753
No 357
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.09 E-value=0.00094 Score=77.71 Aligned_cols=139 Identities=19% Similarity=0.187 Sum_probs=74.9
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcCCC-CCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhh
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAW 938 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~-~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~ 938 (1425)
+-+++|+++.|.||+|+|||||...++... .+.. . .|. ...+.|+.-+..+ ...+-......
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~-~-----gg~-------~~~vlyi~~e~~~----~~~~l~~~~~~ 164 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE-K-----GGL-------SGKAVYIDTEGTF----RWERIENMAKA 164 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG-G-----TCC-------SCEEEEEESSSCC----CHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc-c-----CCC-------CCeEEEEECCCCC----CHHHHHHHHHH
Confidence 568999999999999999999998887521 1100 0 000 0123344333221 12211111111
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHH-HHHHHHHHHHHh---hCCcEEEEeCCCCCCCH---
Q 047682 939 LRLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELV---ANPSIIFMDEPTSGLDA--- 1011 (1425)
Q Consensus 939 lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgG-qrqRl~ia~~L~---~~p~illLDEPTsgLD~--- 1011 (1425)
+. .+. +++++.+- +. +..+.. +.+.+..++.++ .+|+++++|+.++-.+.
T Consensus 165 ~g----~~~-------~~~~~~l~---~~---------~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~ 221 (324)
T 2z43_A 165 LG----LDI-------DNVMNNIY---YI---------RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYP 221 (324)
T ss_dssp TT----CCH-------HHHHHTEE---EE---------ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSC
T ss_pred hC----CCH-------HHHhccEE---EE---------eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhc
Confidence 11 111 12222110 11 113433 345677778887 57999999999986532
Q ss_pred -----HH----HHHHHHHHHHHHhC-CCEEEEEecCc
Q 047682 1012 -----RA----AAIVMRTVRNTVDT-GRTVVCTIHQP 1038 (1425)
Q Consensus 1012 -----~~----~~~i~~~l~~~~~~-g~tvi~~~H~~ 1038 (1425)
.. ...+++.|++++++ |++||++.|-.
T Consensus 222 ~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 222 GRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 11 24455556666543 89999988753
No 358
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.09 E-value=0.0028 Score=72.49 Aligned_cols=27 Identities=44% Similarity=0.683 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++.-++|.||||+|||||++++++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356788999999999999999999865
No 359
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.09 E-value=7.9e-05 Score=95.16 Aligned_cols=48 Identities=33% Similarity=0.330 Sum_probs=35.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCC
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEF 191 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~ 191 (1425)
+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|....+.
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~ 51 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDY 51 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCC
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccC
Confidence 456789999999999999999999999765431 226777 566555443
No 360
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.06 E-value=0.0026 Score=74.50 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=29.1
Q ss_pred eeceE-EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 047682 137 LKDVN-GIVKPSRLTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 137 L~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44433 57999999999999999999999999875
No 361
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.06 E-value=0.00031 Score=75.97 Aligned_cols=43 Identities=30% Similarity=0.238 Sum_probs=35.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCC
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIG 208 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 208 (1425)
.+++|++++|+|+||||||||++.|++.++ .+.+++|++.+++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKP 59 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccC
Confidence 467899999999999999999999999863 2678888766654
No 362
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.97 E-value=0.00012 Score=90.89 Aligned_cols=42 Identities=31% Similarity=0.364 Sum_probs=36.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc-EEE-ECCcc
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSG-RVT-YNGHN 187 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~-~~G~~ 187 (1425)
.+++|++++|+|+||||||||+++|+|.+.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 47899999999999999999999999999876 65 674 78754
No 363
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.92 E-value=0.00011 Score=79.33 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=36.4
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEE--EEcCcc
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI--KISGYP 904 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i--~i~g~~ 904 (1425)
..+.++...++|++++|+|||||||||+.++|++.... .|.+ .++|.+
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~---~G~~~~~~d~d~ 63 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ---KGKLCYILDGDN 63 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh---cCceEEEecCch
Confidence 44556666789999999999999999999999986421 2334 676654
No 364
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.92 E-value=0.00012 Score=86.66 Aligned_cols=37 Identities=22% Similarity=0.089 Sum_probs=34.6
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.+|+++|+.+++|++++|+||||||||||+++|+|..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5889999999999999999999999999999999853
No 365
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.90 E-value=7.1e-05 Score=86.48 Aligned_cols=38 Identities=21% Similarity=0.142 Sum_probs=30.1
Q ss_pred eeeceEEEEeCCe------EEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 136 ILKDVNGIVKPSR------LTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 136 iL~~vs~~i~~G~------~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
.|++++..+..++ +++|+||||||||||+++|.+.+..
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4555555554444 8999999999999999999998863
No 366
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.88 E-value=0.00032 Score=76.08 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=25.8
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCCCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGRKT 890 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~~~ 890 (1425)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999998754
No 367
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.88 E-value=0.0028 Score=72.88 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=41.7
Q ss_pred CChhhhhhHHHHHHHh--cCCcEeEEecCCCCCChHH-HHHHHHHHHHHHHhcCC-EEEEEEecChhhHHhhcCeE
Q 047682 293 ISGGQRKRVTTGEMLV--GPALALFMDEISTGLDSST-TFQIVTSLRQIIHILNG-TAVISLLQPAPETYDLFDDI 364 (1425)
Q Consensus 293 LSGGqrqRvsia~al~--~~p~illLDEptsgLD~~t-~~~i~~~L~~~~~~~~~-t~ii~~~q~~~~~~~~~D~v 364 (1425)
+|+|++ .+++.+. ..|.++++ |.+|... ...+.+.++++....+. .++.+..+....+.+++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 888886 5666676 78999999 8999877 66777777777654442 23333333344444455443
No 368
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.87 E-value=0.00052 Score=70.28 Aligned_cols=30 Identities=33% Similarity=0.427 Sum_probs=24.4
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 047682 139 DVNGIVKPSRLTLLLGPPASGKTTLLLALAG 169 (1425)
Q Consensus 139 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 169 (1425)
+.++.+.+| +++|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344555555 999999999999999999874
No 369
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.84 E-value=0.00051 Score=74.27 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=26.4
Q ss_pred EEeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 861 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 861 ~i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.+++|++++|+|+|||||||+.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999864
No 370
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.82 E-value=0.00038 Score=72.77 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
No 371
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.82 E-value=0.0015 Score=79.46 Aligned_cols=170 Identities=16% Similarity=0.196 Sum_probs=92.6
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESL 933 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l 933 (1425)
-|+.+.+-+++|+++.|.|++|+|||||..-++...... . |. .+.|+.= .++..+-.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~------g~---------~vl~~sl------E~~~~~l~ 245 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--E------GV---------GVGIYSL------EMPAAQLT 245 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--T------CC---------CEEEEES------SSCHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--C------CC---------eEEEEEC------CCCHHHHH
Confidence 456666669999999999999999999988777521100 0 00 1222211 12222211
Q ss_pred H--HHhhccCCC------CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHh--hCCcEEEEe
Q 047682 934 L--YSAWLRLPP------DVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMD 1003 (1425)
Q Consensus 934 ~--~~~~lr~~~------~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~--~~p~illLD 1003 (1425)
. .+.....+. ..+.++. ..+.+.++.+.-.++. +-. ..++|..+- .+.++.+. .+++++++|
T Consensus 246 ~R~~~~~~~i~~~~l~~g~l~~~~~-~~~~~a~~~l~~~~l~---i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 246 LRMMCSEARIDMNRVRLGQLTDRDF-SRLVDVASRLSEAPIY---IDD--TPDLTLMEV--RARARRLVSQNQVGLIIID 317 (444)
T ss_dssp HHHHHHHTTCCTTTCCGGGCCHHHH-HHHHHHHHHHHTSCEE---EEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHcCCCHHHHhCCCCCHHHH-HHHHHHHHHHhcCCEE---EEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEEc
Confidence 1 011111110 1222222 2233334333222211 111 125777765 34556565 479999999
Q ss_pred CCCCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEecC-----------ccH-------HHHHhcCEEEEEeC
Q 047682 1004 EPTSGLDA----------RAAAIVMRTVRNTVDT-GRTVVCTIHQ-----------PSI-------DIFEAFDELFLMKR 1054 (1425)
Q Consensus 1004 EPTsgLD~----------~~~~~i~~~l~~~~~~-g~tvi~~~H~-----------~~~-------~~~~~fD~v~~l~~ 1054 (1425)
..+.=.+. .....+.+.|+.++++ +++||+++|- |.. .+...+|.|+.|.+
T Consensus 318 ~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 318 YLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred ChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 98753322 1234677778888765 8999999983 210 24457899999874
No 372
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.82 E-value=0.001 Score=80.80 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=48.6
Q ss_pred hCCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEE-EeCCcEEEEECCCC
Q 047682 995 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL-MKRGGYEIYVGPLG 1065 (1425)
Q Consensus 995 ~~p~illLDEPTsgLD~-~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD~v~~-l~~Gg~~~y~G~~~ 1065 (1425)
.+|++||+||+..-.+. .+...+...+..+.+.|+.||+++|.|..++....+++.- +. .|.++..+|+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCC
Confidence 38999999999887764 6777888999888878999999999865332112222221 22 35667777765
No 373
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.81 E-value=0.0044 Score=73.52 Aligned_cols=29 Identities=31% Similarity=0.335 Sum_probs=25.1
Q ss_pred CCe--EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047682 146 PSR--LTLLLGPPASGKTTLLLALAGKLDPS 174 (1425)
Q Consensus 146 ~G~--~~~llGp~GsGKSTLL~~L~G~~~~~ 174 (1425)
++. .++|.||+|+|||||++.+++.+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 345 89999999999999999999987653
No 374
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.73 E-value=0.00063 Score=69.64 Aligned_cols=28 Identities=29% Similarity=0.698 Sum_probs=23.5
Q ss_pred eeEEEeCCeEEEEEcCCCCChhhHHhhhc
Q 047682 858 VSGAFRPGVLTALMGVSGAGKTTLMDVLA 886 (1425)
Q Consensus 858 vs~~i~~Ge~~al~G~sGaGKTTLl~~l~ 886 (1425)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 44555565 99999999999999999986
No 375
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.72 E-value=0.0011 Score=80.50 Aligned_cols=68 Identities=10% Similarity=0.172 Sum_probs=40.0
Q ss_pred cCCcEeEEecCCCCCCh-HHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCeEEE-EcCCeEEEecC
Q 047682 309 GPALALFMDEISTGLDS-STTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDDIIL-ISEGQIVFQGP 377 (1425)
Q Consensus 309 ~~p~illLDEptsgLD~-~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil-L~~G~iv~~G~ 377 (1425)
.++++|++||+..-.+. .+...+.+.+..+.. .+..+|++.+.+..++..+.+++.- +..|.++..++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~ 262 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEP 262 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCC
Confidence 37899999999887765 566777788777643 3556666544444433222222222 33455544443
No 376
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.61 E-value=0.00039 Score=82.47 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46779999999999999999999974
No 377
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.60 E-value=0.00061 Score=72.92 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=24.7
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.+|++++|+||||||||||++.|.+..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999999999754
No 378
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.58 E-value=0.0042 Score=71.36 Aligned_cols=29 Identities=41% Similarity=0.519 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLDPS 174 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 174 (1425)
|...++|.||||+|||||.++|++.+...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 45678999999999999999999987553
No 379
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.58 E-value=0.0013 Score=75.68 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.6
Q ss_pred EEeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 861 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 861 ~i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.++++.-+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35688899999999999999999999754
No 380
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.56 E-value=0.00055 Score=80.49 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=33.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCcc
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 187 (1425)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeec
Confidence 467899999999999999999999987765 6777666544
No 381
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.55 E-value=0.01 Score=72.06 Aligned_cols=38 Identities=32% Similarity=0.549 Sum_probs=32.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.+-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34577777789999999999999999999999888754
No 382
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.53 E-value=0.00074 Score=70.78 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=28.5
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCc
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGY 903 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~ 903 (1425)
.+|++++|+|+|||||||+.+.|++.. |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCc
Confidence 479999999999999999999999753 34556654
No 383
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.52 E-value=0.00023 Score=83.46 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=39.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNG 185 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 185 (1425)
.+++++++.+++|.+++|+|+||+|||||++.|+|.+.+. .|+|.+-+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~ 91 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIA 91 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 4677888888999999999999999999999999988654 55555433
No 384
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.49 E-value=0.0016 Score=84.89 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=27.3
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
+.+++|+.++|+||||+|||||+++|++..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 357899999999999999999999999865
No 385
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.48 E-value=0.00061 Score=71.81 Aligned_cols=40 Identities=33% Similarity=0.358 Sum_probs=31.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc--EEEECCccC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSG--RVTYNGHNM 188 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~~G~~~ 188 (1425)
++|++++|.|++||||||+.+.|++.+.+ .| .+.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChHH
Confidence 47999999999999999999999998754 34 566665443
No 386
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.48 E-value=0.0043 Score=74.44 Aligned_cols=35 Identities=29% Similarity=0.199 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTY 183 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 183 (1425)
++.+++++|||||||||++..|++.+.+. .++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEE
Confidence 68999999999999999999999988654 445543
No 387
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.42 E-value=0.0028 Score=76.04 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=32.5
Q ss_pred HHHHHHhhCCcEEEEeCCC-CC--CCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 047682 988 TIAVELVANPSIIFMDEPT-SG--LDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037 (1425)
Q Consensus 988 ~ia~~L~~~p~illLDEPT-sg--LD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1037 (1425)
+++.+...+++++++|+|. .+ .|.....++.++++.+......+|+.+|.
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 4555555689999999997 45 78877777777665553333444555553
No 388
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.40 E-value=0.0059 Score=70.13 Aligned_cols=29 Identities=41% Similarity=0.673 Sum_probs=26.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
++++.-++|.||||+|||||+++|++...
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 56788899999999999999999998764
No 389
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.39 E-value=0.022 Score=66.72 Aligned_cols=30 Identities=37% Similarity=0.523 Sum_probs=26.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+-+++|+++.|.||||||||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999998887654
No 390
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.36 E-value=0.0012 Score=78.12 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
.+++.++|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45778999999999999999999987643
No 391
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.36 E-value=0.0011 Score=73.02 Aligned_cols=38 Identities=29% Similarity=0.266 Sum_probs=27.7
Q ss_pred eeeceEEEEe---CCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 136 ILKDVNGIVK---PSRLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 136 iL~~vs~~i~---~G~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
=|.++|+.+. +|.+++|.||+||||||+++.|+..+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4778888876 9999999999999999999999998753
No 392
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.35 E-value=0.0026 Score=77.19 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=39.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC------C---CCcccEEEECCccCCCCC---ccceEEEEccCCCCCCCCCHHHH
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLDP------S---LKLSGRVTYNGHNMDEFV---PQRTAAYISQHDVHIGEMTVRET 215 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~~------~---~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~ 215 (1425)
-.++|+|+||+|||||++.|+|.... . -..+|.+.++|+++.-.+ .++...+.+|....+..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 47899999999999999999998531 0 023789999997642211 12333444443333444444555
Q ss_pred HHh
Q 047682 216 LAF 218 (1425)
Q Consensus 216 l~f 218 (1425)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 393
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.35 E-value=0.00095 Score=69.69 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.|++++|+|+|||||||++++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
No 394
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.33 E-value=0.00034 Score=76.74 Aligned_cols=34 Identities=32% Similarity=0.383 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC---CCCCCcccEEEE
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKL---DPSLKLSGRVTY 183 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~---~~~~~~~G~V~~ 183 (1425)
+.+++|+|||||||||+.+.|++.+ .++ +|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d---~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD---SGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE---HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc---Ccceee
Confidence 4689999999999999999999876 344 677765
No 395
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.33 E-value=0.00031 Score=81.12 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=31.2
Q ss_pred eeeeeceeEEEeCCe------EEEEEcCCCCChhhHHhhhcCCC
Q 047682 852 LVLLNGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge------~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
++.|++++..+..++ ++||+||||||||||+++|.+..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346667777776665 99999999999999999999853
No 396
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.30 E-value=0.0031 Score=65.87 Aligned_cols=27 Identities=37% Similarity=0.571 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999974
No 397
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.28 E-value=0.00063 Score=79.20 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=30.4
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 857 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 857 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
|+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999999999999999999873
No 398
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.25 E-value=0.00057 Score=85.25 Aligned_cols=47 Identities=26% Similarity=0.421 Sum_probs=39.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNG 185 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 185 (1425)
.+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 3566667666 89999999999999999999999998765 67776655
No 399
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.23 E-value=0.00086 Score=72.78 Aligned_cols=41 Identities=29% Similarity=0.319 Sum_probs=34.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc--EEEECCcc
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSG--RVTYNGHN 187 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~~G~~ 187 (1425)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 4678999999999999999999999998754 67 77777643
No 400
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.23 E-value=0.005 Score=67.21 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=42.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CccHHHHHhcCEEEEEe
Q 047682 996 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 996 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~fD~v~~l~ 1053 (1425)
+++++++||.-. |+. .+.+.++.+++.|.+||++-| .++.++.+++|+|..|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 654 355566777777999999999 66778999999999886
No 401
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.20 E-value=0.0037 Score=65.29 Aligned_cols=26 Identities=38% Similarity=0.698 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
++|..++|+|++|+|||||++.|+|.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999985
No 402
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.19 E-value=0.0015 Score=70.40 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=25.5
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.++|++++|+|+||||||||++.|++..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999999853
No 403
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.17 E-value=0.0026 Score=68.70 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=24.1
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 047682 139 DVNGIVKPSRLTLLLGPPASGKTTLLLALAG 169 (1425)
Q Consensus 139 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 169 (1425)
+.++.+.+ .+++|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHH
Confidence 34455555 4999999999999999999864
No 404
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.15 E-value=0.029 Score=61.77 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLDPS 174 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~~~ 174 (1425)
.++|+|++|+|||||++.|+|.....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~ 56 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFH 56 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCc
Confidence 47999999999999999999976543
No 405
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.13 E-value=0.0058 Score=69.33 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.++.-+.|.||+|+|||||.+.++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456679999999999999999998753
No 406
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.11 E-value=0.0032 Score=66.84 Aligned_cols=34 Identities=35% Similarity=0.386 Sum_probs=20.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
+++++|+..++. .++++|++|+|||||++.+.+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 789999998887 5689999999999999999984
No 407
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.01 E-value=0.0028 Score=68.40 Aligned_cols=28 Identities=29% Similarity=0.698 Sum_probs=23.3
Q ss_pred eeEEEeCCeEEEEEcCCCCChhhHHhhhc
Q 047682 858 VSGAFRPGVLTALMGVSGAGKTTLMDVLA 886 (1425)
Q Consensus 858 vs~~i~~Ge~~al~G~sGaGKTTLl~~l~ 886 (1425)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 44555565 99999999999999999885
No 408
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.00 E-value=0.0046 Score=74.90 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=28.1
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcC
Q 047682 854 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 854 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
-|+.+.+-+++|+++.|.|++|+|||||..-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3555555689999999999999999999777764
No 409
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.99 E-value=0.0013 Score=72.77 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcC
Q 047682 980 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1047 (1425)
Q Consensus 980 SgGqrqRl~ia~~L~~~p~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fD 1047 (1425)
+.|.-.+.. ...+.+-+++++||+-. ++|.......++.+.+....-++++++.--+.....+.|+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 445554442 33578899999999966 6877766544444444332234666655444434444554
No 410
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.99 E-value=0.0011 Score=73.27 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=37.6
Q ss_pred hhhhhhHHHHHHHhcCCcEeEEecCCC-CCChHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhcCe
Q 047682 295 GGQRKRVTTGEMLVGPALALFMDEIST-GLDSSTTFQIVTSLRQIIHILNGTAVISLLQPAPETYDLFDD 363 (1425)
Q Consensus 295 GGqrqRvsia~al~~~p~illLDEpts-gLD~~t~~~i~~~L~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 363 (1425)
.|.-.+.. +..+.+-+++++||.-. ++|.......++.+..... .-++++++-+.+.+...++|++
T Consensus 163 pg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 163 VGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp HHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTTS
T ss_pred HHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcCC
Confidence 34444432 33578889999999976 6777665444444433221 1235555556665555555543
No 411
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.96 E-value=0.0068 Score=64.92 Aligned_cols=25 Identities=40% Similarity=0.426 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.-+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999998764
No 412
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.94 E-value=0.0028 Score=67.16 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=26.4
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 047682 139 DVNGIVKPSRLTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 139 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56778888999999999999999999999876
No 413
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.90 E-value=0.0026 Score=68.60 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=26.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45889999999999999999999998764
No 414
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.89 E-value=0.00058 Score=80.67 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=35.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 213 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 213 (1425)
+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.....-.......+..|.+.....+++.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~ 100 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVV 100 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEEEE
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcccceEEE
Confidence 44778888876 999999999999999998875433 444433333221110011234444443333345666
Q ss_pred HHHHh
Q 047682 214 ETLAF 218 (1425)
Q Consensus 214 E~l~f 218 (1425)
||.-+
T Consensus 101 DTpG~ 105 (361)
T 2qag_A 101 DTPGY 105 (361)
T ss_dssp C----
T ss_pred Eeccc
Confidence 66544
No 415
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.84 E-value=0.0051 Score=65.30 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=21.2
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+++++|+..++. .++++|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999988877 7899999999999999999973
No 416
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.83 E-value=0.0032 Score=69.33 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=25.6
Q ss_pred eeceeEEEe---CCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 855 LNGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 855 L~~vs~~i~---~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
|.++++++. +|.+++|.|++||||||+++.|+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 455666665 89999999999999999999999754
No 417
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.81 E-value=0.026 Score=66.20 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.0
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcC
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
+-+++|+++.|.|++|+|||||...++.
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999999877764
No 418
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.78 E-value=0.012 Score=68.03 Aligned_cols=46 Identities=4% Similarity=0.081 Sum_probs=34.6
Q ss_pred hhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 047682 994 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1039 (1425)
Q Consensus 994 ~~~p~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1039 (1425)
..++++||+||+-. .-|..+...+...+..+.+.|..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 45799999999866 23447778888888887777777777777553
No 419
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.78 E-value=0.0019 Score=69.25 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=29.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 46788888777775 689999999999999999874
No 420
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.77 E-value=0.0035 Score=65.84 Aligned_cols=40 Identities=28% Similarity=0.219 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCcc
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 187 (1425)
.+++|+|++|||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5789999999999999999999865421224777776654
No 421
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.74 E-value=0.0028 Score=67.07 Aligned_cols=30 Identities=37% Similarity=0.450 Sum_probs=26.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLDPS 174 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 174 (1425)
++|.++.|+|++||||||+.+.|++.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999987653
No 422
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.69 E-value=0.032 Score=61.50 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=29.0
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEec
Q 047682 995 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 1036 (1425)
Q Consensus 995 ~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~--~g~tvi~~~H 1036 (1425)
.+|+++++..+.+.++......+...++.... ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 46899999999888888666665555543321 1258888888
No 423
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.66 E-value=0.025 Score=65.44 Aligned_cols=28 Identities=32% Similarity=0.499 Sum_probs=25.3
Q ss_pred EEEeCCeEEEEEcCCCCChhhHHhhhcC
Q 047682 860 GAFRPGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 860 ~~i~~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
+-+++|+++.|.|++|+|||||...++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999999887764
No 424
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.66 E-value=0.017 Score=62.98 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=38.6
Q ss_pred CCcEeEEecCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEEe---------cChhhHHhhcCeEEEEc
Q 047682 310 PALALFMDEISTGLDSSTTFQIVTSLRQIIHILNGTAVISLL---------QPAPETYDLFDDIILIS 368 (1425)
Q Consensus 310 ~p~illLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~vilL~ 368 (1425)
+++++++||.-. |+.. +++.++.+++ .+..+|++=+ .+++++..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999965 6653 4556666665 3566666544 46788999999999875
No 425
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.65 E-value=0.0055 Score=71.05 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+.-+.|.||+|+|||||+++|++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 45688999999999999999998764
No 426
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.64 E-value=0.0033 Score=75.29 Aligned_cols=45 Identities=24% Similarity=0.099 Sum_probs=38.3
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCcc
Q 047682 138 KDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187 (1425)
Q Consensus 138 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 187 (1425)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 567777 89999999999999999999999998775 6777776543
No 427
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.63 E-value=0.03 Score=65.88 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.6
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
++..-+.|.||+|+|||||.+.|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35567899999999999999999864
No 428
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.63 E-value=0.004 Score=73.65 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=25.6
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 047682 141 NGIVKPSRLTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 141 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 335567888999999999999999999997
No 429
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.63 E-value=0.016 Score=62.01 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChhhHHhhhcCC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.-+.|.||+|+|||||++.|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999863
No 430
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.58 E-value=0.0023 Score=79.40 Aligned_cols=42 Identities=36% Similarity=0.501 Sum_probs=32.2
Q ss_pred EEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEE-EEE-EcCcc
Q 047682 861 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NIK-ISGYP 904 (1425)
Q Consensus 861 ~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G-~i~-i~g~~ 904 (1425)
.+++|++++|+|+||||||||+++|+|.... ..| .+. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 3679999999999999999999999996432 122 453 66643
No 431
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.58 E-value=0.0018 Score=75.84 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=33.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
..+++++++.+.+|.+++|+|++|||||||++.|++.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578888999999999999999999999999999874
No 432
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.56 E-value=0.0032 Score=70.45 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=32.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCccC
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHNM 188 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 188 (1425)
..+++.++.|+|+|||||||+.+.|+..+. .|.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHHH
Confidence 356788999999999999999999998874 24566777543
No 433
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.54 E-value=0.0045 Score=65.05 Aligned_cols=26 Identities=42% Similarity=0.460 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
++|++++|+|++||||||+.+.|++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999975
No 434
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.54 E-value=0.0078 Score=73.00 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCChhhHHhhhcCCCC------C----ceEEEEEEEcCcc
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGRKT------G----GYITGNIKISGYP 904 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~~~------~----~~~~G~i~i~g~~ 904 (1425)
-.++|+|+||+|||||+|.|+|... + ....|.+.++|.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 3699999999999999999999532 1 1345788888864
No 435
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.52 E-value=0.0035 Score=73.00 Aligned_cols=33 Identities=30% Similarity=0.542 Sum_probs=31.7
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 139 DVNGIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 139 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999875
No 436
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.50 E-value=0.022 Score=64.39 Aligned_cols=28 Identities=43% Similarity=0.691 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+++.-++|.||+|+|||||+++++..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566799999999999999999998763
No 437
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.45 E-value=0.0047 Score=67.50 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+.+++|+|||||||||+.++|++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999974
No 438
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.41 E-value=0.005 Score=66.33 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=25.1
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
..+|.+++|+||||||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999998644
No 439
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.41 E-value=0.0054 Score=64.89 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.1
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 857 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 857 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46778888999999999999999999999864
No 440
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.29 E-value=0.0023 Score=73.32 Aligned_cols=45 Identities=24% Similarity=0.130 Sum_probs=36.4
Q ss_pred ec-eEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCc
Q 047682 138 KD-VNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGH 186 (1425)
Q Consensus 138 ~~-vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~ 186 (1425)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~ 134 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGA 134 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEec
Confidence 45 777766 9999999999999999999999998764 566665543
No 441
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.29 E-value=0.0068 Score=65.05 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047682 149 LTLLLGPPASGKTTLLLALAG 169 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G 169 (1425)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 442
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.29 E-value=0.072 Score=62.56 Aligned_cols=27 Identities=37% Similarity=0.632 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++..-++|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999999865
No 443
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.26 E-value=0.0018 Score=75.14 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=31.4
Q ss_pred eeeceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCCC
Q 047682 136 ILKDVNGIVKPSRL--TLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 136 iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
++++++..+++|+. ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56666777778877 99999999999999999999764
No 444
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.24 E-value=0.0037 Score=66.84 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=30.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4778888888887 5799999999999999999974
No 445
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.22 E-value=0.0091 Score=62.92 Aligned_cols=27 Identities=37% Similarity=0.592 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.+|..++|.|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998643
No 446
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.21 E-value=0.0073 Score=67.45 Aligned_cols=45 Identities=31% Similarity=0.565 Sum_probs=29.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCcc
Q 047682 136 ILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNGHN 187 (1425)
Q Consensus 136 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 187 (1425)
.++++++..++| ++|.||||+|||||+++|++..... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHH
Confidence 355555555555 8899999999999999999986432 35566543
No 447
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.14 E-value=0.0033 Score=78.29 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=37.8
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCc
Q 047682 853 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGY 903 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~ 903 (1425)
.+++++++.+ +|+.++|+||||+|||||+++|++... ...|.+.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 4567777777 899999999999999999999998543 34567766654
No 448
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.10 E-value=0.01 Score=62.29 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047682 149 LTLLLGPPASGKTTLLLALAGK 170 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~ 170 (1425)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
No 449
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.06 E-value=0.0074 Score=70.82 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+++.+++|+|++|||||||+|.|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999984
No 450
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.02 E-value=0.0026 Score=75.13 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=26.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 852 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 852 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+.+++++++.| +|+|++|+|||||++.|.|.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 34677888876 99999999999999999875
No 451
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.02 E-value=0.012 Score=60.77 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.++|+|+||+|||||++.|+|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999653
No 452
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.99 E-value=0.018 Score=67.91 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 35668999999999999999999864
No 453
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.98 E-value=0.019 Score=60.20 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 454
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.96 E-value=0.016 Score=63.43 Aligned_cols=94 Identities=11% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCeEEEEEcCCCCChhhHHhhhcC-CCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCC
Q 047682 864 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP 942 (1425)
Q Consensus 864 ~Ge~~al~G~sGaGKTTLl~~l~g-~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~ 942 (1425)
++..+.|.||+|+|||||++.++. ....+...-.+..+..........
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 99 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALL------------------------------- 99 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGG-------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH-------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH--HHHHHHH
Q 047682 943 PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA--AAIVMRT 1020 (1425)
Q Consensus 943 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~--~~~i~~~ 1020 (1425)
..+.+|.+|++|| ...++... ...+.+.
T Consensus 100 -------------------------------------------------~~~~~~~vliiDe-~~~~~~~~~~~~~l~~~ 129 (242)
T 3bos_A 100 -------------------------------------------------EGLEQFDLICIDD-VDAVAGHPLWEEAIFDL 129 (242)
T ss_dssp -------------------------------------------------TTGGGSSEEEEET-GGGGTTCHHHHHHHHHH
T ss_pred -------------------------------------------------HhccCCCEEEEec-cccccCCHHHHHHHHHH
Q ss_pred HHHHHhCCCE-EEEEecCc
Q 047682 1021 VRNTVDTGRT-VVCTIHQP 1038 (1425)
Q Consensus 1021 l~~~~~~g~t-vi~~~H~~ 1038 (1425)
++...+.+.. +|++++.+
T Consensus 130 l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 130 YNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp HHHHHHHCSCEEEEEESSC
T ss_pred HHHHHHcCCCeEEEEcCCC
No 455
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.90 E-value=0.0092 Score=63.98 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999875
No 456
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.88 E-value=0.011 Score=61.84 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 457
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.85 E-value=0.13 Score=59.53 Aligned_cols=119 Identities=23% Similarity=0.288 Sum_probs=0.0
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP 942 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~ 942 (1425)
.|..-+.|.||+|+|||||.+.++....+... +.+++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~~~--------------------------------------- 80 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSISSS--------------------------------------- 80 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEECC---------------------------------------
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEEhH---------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCC-------CCCCCHHHHH
Q 047682 943 PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-------TSGLDARAAA 1015 (1425)
Q Consensus 943 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEP-------TsgLD~~~~~ 1015 (1425)
.+....+| ...+.-|-.+..+-..+|.|||+||. .++.......
T Consensus 81 ----------------------~l~~~~~g-------~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~ 131 (322)
T 1xwi_A 81 ----------------------DLVSKWLG-------ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARR 131 (322)
T ss_dssp ----------------------SSCCSSCC-------SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHH
T ss_pred ----------------------HHHhhhhh-------HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHH
Q ss_pred HHHHHHHHH-----HhCCCEEEEEecCc---cHHHHHhcCEEEEE
Q 047682 1016 IVMRTVRNT-----VDTGRTVVCTIHQP---SIDIFEAFDELFLM 1052 (1425)
Q Consensus 1016 ~i~~~l~~~-----~~~g~tvi~~~H~~---~~~~~~~fD~v~~l 1052 (1425)
.+.+.+..+ ...+..||+++..| ...+...||+.+.+
T Consensus 132 ~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i 176 (322)
T 1xwi_A 132 IKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYI 176 (322)
T ss_dssp HHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEEC
T ss_pred HHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEe
No 458
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.75 E-value=0.013 Score=60.56 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987653
No 459
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.74 E-value=0.043 Score=75.69 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=27.5
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 143 IVKPSRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 143 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
-+++|+++.|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999987654
No 460
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.73 E-value=0.0089 Score=64.12 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhhHHhhhcC
Q 047682 867 LTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g 887 (1425)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 461
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.70 E-value=0.11 Score=64.11 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=45.3
Q ss_pred HHHHHHHHHh--hCCcEEEEeCCCCCC-------CH-HHHHHHHHHHHHHHhC-CCEEEEEecCcc--------------
Q 047682 985 KRLTIAVELV--ANPSIIFMDEPTSGL-------DA-RAAAIVMRTVRNTVDT-GRTVVCTIHQPS-------------- 1039 (1425)
Q Consensus 985 qRl~ia~~L~--~~p~illLDEPTsgL-------D~-~~~~~i~~~l~~~~~~-g~tvi~~~H~~~-------------- 1039 (1425)
+.+..++.++ .+|+++++|=-+. + +. .....+++.|++++++ |++||+++|-..
T Consensus 341 ~i~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~ 419 (503)
T 1q57_A 341 RLLAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVS 419 (503)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCC
Confidence 3444555554 3699999995443 2 21 2334577778887755 999999998542
Q ss_pred -------HHHHHhcCEEEEEeC
Q 047682 1040 -------IDIFEAFDELFLMKR 1054 (1425)
Q Consensus 1040 -------~~~~~~fD~v~~l~~ 1054 (1425)
..+...+|-|+.|.+
T Consensus 420 l~dlr~s~~ie~~aD~vi~l~r 441 (503)
T 1q57_A 420 ITDLRGSGALRQLSDTIIALER 441 (503)
T ss_dssp SSSCSSSSHHHHHCSEEEEEEE
T ss_pred hhhhccchHhhecCcEEEEEEe
Confidence 135567899999964
No 462
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.68 E-value=0.013 Score=60.47 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChhhHHhhhcCCC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
-.++|+|++|+|||||++.|+|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999853
No 463
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.67 E-value=0.0033 Score=73.58 Aligned_cols=41 Identities=32% Similarity=0.570 Sum_probs=35.2
Q ss_pred ceeeeceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCCCCC
Q 047682 134 FTILKDVNGIVKPSRL--TLLLGPPASGKTTLLLALAGKLDPS 174 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~~~ 174 (1425)
..+++.++..++.|++ +++.||||+||||+++++++.+.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3477778888888988 9999999999999999999987543
No 464
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.63 E-value=0.039 Score=66.77 Aligned_cols=38 Identities=29% Similarity=0.361 Sum_probs=32.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 134 FTILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 134 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.+-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 44577777779999999999999999999988887643
No 465
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.62 E-value=0.016 Score=66.03 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLDPSLKLSGRVTYNG 185 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 185 (1425)
.|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 467899999999999999999987653 24556665
No 466
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.59 E-value=0.053 Score=60.32 Aligned_cols=120 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccC
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRL 941 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~ 941 (1425)
+++..-+.|.||+|+|||||.+.++.... .--+.+++.......
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~~~~~~~~~~~-------------------------------- 79 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEAQ----VPFLAMAGAEFVEVI-------------------------------- 79 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT----CCEEEEETTTTSSSS--------------------------------
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEechHHHHhhc--------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC-----------C
Q 047682 942 PPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL-----------D 1010 (1425)
Q Consensus 942 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgL-----------D 1010 (1425)
.-.+..+.+-.+..+.-..|.+|++||.-.=. +
T Consensus 80 ------------------------------------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~ 123 (262)
T 2qz4_A 80 ------------------------------------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSN 123 (262)
T ss_dssp ------------------------------------TTHHHHHHHHHHHHHHHTCSEEEEEECC----------------
T ss_pred ------------------------------------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccc
Q ss_pred HHHHHHHHHHHHHHHh----CCCEEEEEecCcc---HHHHH--hcCEEEEEe
Q 047682 1011 ARAAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDIFE--AFDELFLMK 1053 (1425)
Q Consensus 1011 ~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~---~~~~~--~fD~v~~l~ 1053 (1425)
......+.+++..+.. .+..||++++.|. ..+.. .||+.+.+.
T Consensus 124 ~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 124 TEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp ---CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred hhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC
No 467
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.59 E-value=0.0036 Score=72.62 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=32.4
Q ss_pred eeeeceeEEEeCCeE--EEEEcCCCCChhhHHhhhcCC
Q 047682 853 VLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 853 ~iL~~vs~~i~~Ge~--~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++++++..+++|+. ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 367888888999988 999999999999999999974
No 468
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.57 E-value=0.013 Score=61.54 Aligned_cols=37 Identities=38% Similarity=0.380 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCChhhHHhhhcCCCC-CceEEEEEEEcC
Q 047682 866 VLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNIKISG 902 (1425)
Q Consensus 866 e~~al~G~sGaGKTTLl~~l~g~~~-~~~~~G~i~i~g 902 (1425)
.+++|+|+||||||||++.|.+... .+...|.+..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 5899999999999999999987421 122345666554
No 469
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.55 E-value=0.015 Score=61.45 Aligned_cols=27 Identities=48% Similarity=0.628 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457889999999999999999998654
No 470
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.50 E-value=0.032 Score=59.38 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=42.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CccHHHHHhcCEEEEEe
Q 047682 996 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 996 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~fD~v~~l~ 1053 (1425)
+.+++++||.-- +|+. +++.++++++.|..||++-+ .++.++.+++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 478999999654 6643 35667887777999999999 66678999999998876
No 471
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.45 E-value=0.018 Score=60.66 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 147 SRLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 147 G~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
|.+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987653
No 472
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.44 E-value=0.013 Score=69.33 Aligned_cols=45 Identities=18% Similarity=0.354 Sum_probs=32.5
Q ss_pred eEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC---------CceEEEEEEEcCc
Q 047682 859 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---------GGYITGNIKISGY 903 (1425)
Q Consensus 859 s~~i~~Ge~~al~G~sGaGKTTLl~~l~g~~~---------~~~~~G~i~i~g~ 903 (1425)
-+.++.|..++|+|+||+|||||++.|+|... -.+..|.+.+++.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 34567889999999999999999999998521 1233567766653
No 473
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.41 E-value=0.018 Score=63.14 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999664
No 474
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.38 E-value=0.26 Score=60.72 Aligned_cols=37 Identities=11% Similarity=-0.007 Sum_probs=30.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 135 TILKDVNGIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 135 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+-|+.+-+-+++|+++.|.|+||+|||||+.-++-..
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 3566666669999999999999999999988776543
No 475
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.33 E-value=0.018 Score=63.43 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 144 VKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 144 i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999864
No 476
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.28 E-value=0.018 Score=60.75 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=24.9
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
.++|.++.|+|++||||||+.+.|++..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999999753
No 477
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.28 E-value=0.021 Score=60.02 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
No 478
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.25 E-value=0.014 Score=63.21 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=25.3
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
+++|.+++|+|++||||||+.+.|++..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999999754
No 479
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.20 E-value=0.022 Score=60.79 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999876
No 480
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.18 E-value=0.018 Score=60.60 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.4
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAG 887 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g 887 (1425)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
No 481
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.16 E-value=0.021 Score=63.66 Aligned_cols=25 Identities=36% Similarity=0.614 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 148 RLTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998653
No 482
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.16 E-value=0.023 Score=59.78 Aligned_cols=26 Identities=27% Similarity=0.185 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998765
No 483
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.11 E-value=0.023 Score=58.68 Aligned_cols=19 Identities=37% Similarity=0.595 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 047682 149 LTLLLGPPASGKTTLLLAL 167 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L 167 (1425)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999999
No 484
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.08 E-value=0.015 Score=75.84 Aligned_cols=32 Identities=44% Similarity=0.571 Sum_probs=28.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 142 GIVKPSRLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 142 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
+.+++|+.++|.||||||||||+++|+|.+..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999999998753
No 485
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.08 E-value=0.027 Score=60.43 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKLDP 173 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~~~ 173 (1425)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999987653
No 486
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.07 E-value=0.021 Score=59.94 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999984
No 487
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.03 E-value=0.027 Score=58.72 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 047682 148 RLTLLLGPPASGKTTLLLALAG 169 (1425)
Q Consensus 148 ~~~~llGp~GsGKSTLL~~L~G 169 (1425)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 488
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.97 E-value=0.24 Score=68.40 Aligned_cols=36 Identities=33% Similarity=0.399 Sum_probs=29.7
Q ss_pred eeeceE--EEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 136 ILKDVN--GIVKPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 136 iL~~vs--~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
-|+.+- +-+++|+++.|.||||+|||||...++...
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~ 407 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 466654 469999999999999999999988877543
No 489
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.97 E-value=0.019 Score=61.56 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 490
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.91 E-value=0.093 Score=61.65 Aligned_cols=118 Identities=22% Similarity=0.257 Sum_probs=0.0
Q ss_pred EeCCeEEEEEcCCCCChhhHHhhhcC--CCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhc
Q 047682 862 FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWL 939 (1425)
Q Consensus 862 i~~Ge~~al~G~sGaGKTTLl~~l~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~l 939 (1425)
+++|+++.|.|++|+|||||...++. ...++.+ +.++........+.+..|.-.++-......|+.+.+.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~v---lyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~----- 142 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTC---AFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALE----- 142 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE---EEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHH-----
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeE---EEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHH-----
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCCC--------
Q 047682 940 RLPPDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGL-------- 1009 (1425)
Q Consensus 940 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~--~~p~illLDEPTsgL-------- 1009 (1425)
+++.++ .+++++++|..+.=.
T Consensus 143 -------------------------------------------------~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~ 173 (366)
T 1xp8_A 143 -------------------------------------------------IMELLVRSGAIDVVVVDSVAALTPRAEIEGD 173 (366)
T ss_dssp -------------------------------------------------HHHHHHTTTCCSEEEEECTTTCCCSTTC---
T ss_pred -------------------------------------------------HHHHHHhcCCCCEEEEeChHHhccccccccc
Q ss_pred --CH---HHHHHHHHHHHHH----HhCCCEEEEEec
Q 047682 1010 --DA---RAAAIVMRTVRNT----VDTGRTVVCTIH 1036 (1425)
Q Consensus 1010 --D~---~~~~~i~~~l~~~----~~~g~tvi~~~H 1036 (1425)
|. ..++.+.+.++++ .+.+++||++.|
T Consensus 174 ~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 174 MGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
No 491
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.88 E-value=0.024 Score=59.41 Aligned_cols=26 Identities=46% Similarity=0.409 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
.+..+.|.|++||||||+.+.|+-.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46678999999999999999998554
No 492
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.87 E-value=0.024 Score=59.11 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChhhHHhhhcCCC
Q 047682 865 GVLTALMGVSGAGKTTLMDVLAGRK 889 (1425)
Q Consensus 865 Ge~~al~G~sGaGKTTLl~~l~g~~ 889 (1425)
|.++.|+|++||||||+.+.|+.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999754
No 493
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.85 E-value=0.024 Score=60.06 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999987654
No 494
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.77 E-value=0.027 Score=59.66 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998654
No 495
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.77 E-value=0.024 Score=58.60 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhhHHhhhcCC
Q 047682 867 LTALMGVSGAGKTTLMDVLAGR 888 (1425)
Q Consensus 867 ~~al~G~sGaGKTTLl~~l~g~ 888 (1425)
+++|+|++||||||+.+.|+.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 496
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.73 E-value=0.03 Score=60.22 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 047682 145 KPSRLTLLLGPPASGKTTLLLALAGKL 171 (1425)
Q Consensus 145 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 171 (1425)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999998754
No 497
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.71 E-value=0.096 Score=56.36 Aligned_cols=128 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred eCCeEEEEEcCCCCChhhHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHhhccCC
Q 047682 863 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP 942 (1425)
Q Consensus 863 ~~Ge~~al~G~sGaGKTTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~~~~~lr~~ 942 (1425)
.+|.+..+.|+-||||||.+--++-+.. ..-++..-+-|.-|.-+..
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~-----------------~~g~kVli~k~~~d~R~ge---------------- 72 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQ-----------------FAKQHAIVFKPCIDNRYSE---------------- 72 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHH-----------------HTTCCEEEEECC-----------------------
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH-----------------HCCCEEEEEEeccCCcchH----------------
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 047682 943 PDVDSETRRMFLEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022 (1425)
Q Consensus 943 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqrqRl~ia~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~ 1022 (1425)
..+...+|+.-.+...-........-.+ +.+++++||.-- +| ...++.++
T Consensus 73 ------------~~i~s~~g~~~~a~~~~~~~~~~~~~~~-------------~~dvViIDEaQF-~~----~~~V~~l~ 122 (214)
T 2j9r_A 73 ------------EDVVSHNGLKVKAVPVSASKDIFKHITE-------------EMDVIAIDEVQF-FD----GDIVEVVQ 122 (214)
T ss_dssp ----------------------CCEEECSSGGGGGGGCCS-------------SCCEEEECCGGG-SC----TTHHHHHH
T ss_pred ------------HHHHhhcCCeeEEeecCCHHHHHHHHhc-------------CCCEEEEECccc-CC----HHHHHHHH
Q ss_pred HHHhCCCEEEEEec---------CccHHHHHhcCEEEEEe
Q 047682 1023 NTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 1053 (1425)
Q Consensus 1023 ~~~~~g~tvi~~~H---------~~~~~~~~~fD~v~~l~ 1053 (1425)
++++.|..||++-+ .++.++.+++|.|.-|+
T Consensus 123 ~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 123 VLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp HHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred HHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
No 498
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.65 E-value=0.032 Score=59.45 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047682 149 LTLLLGPPASGKTTLLLALAGKLD 172 (1425)
Q Consensus 149 ~~~llGp~GsGKSTLL~~L~G~~~ 172 (1425)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 578999999999999999998753
No 499
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.62 E-value=0.033 Score=60.35 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhc
Q 047682 146 PSRLTLLLGPPASGKTTLLLALAG 169 (1425)
Q Consensus 146 ~G~~~~llGp~GsGKSTLL~~L~G 169 (1425)
.+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 500
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.62 E-value=0.16 Score=51.11 Aligned_cols=42 Identities=2% Similarity=0.078 Sum_probs=29.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Q 047682 996 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1038 (1425)
Q Consensus 996 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1038 (1425)
+..+||+||.- .|+......+.+.+.+..+.+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35789999965 5788888888888776533456677777654
Done!