BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047688
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 25/118 (21%)
Query: 70 QCSSHILKPDTLYYYQCGDPSIPAMSGTYYFRTMPDSSPTSYPSRIAIVGDVGLTYNTTS 129
C+ L+ DT YYY+ G ++F T P P P ++GD+G T+++ +
Sbjct: 88 HCTIKDLEYDTKYYYRLG---FGDAKRQFWFVTPPKPGP-DVPYVFGLIGDIGQTHDSNT 143
Query: 130 TVSHMISN--RPDLILLVGDVTYANLYLTNGTGFDCYSCSFANSPIYETYQPRWDYWG 185
T++H N + +L +GD++Y+N + + RWD WG
Sbjct: 144 TLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNN-------------------RWDTWG 182
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 28 TSVVRYGTLRSQLNRRATCHSLVSNQLYPFFRPSKLHLWNHTQCSSHILKPDTLYYYQCG 87
+S VRY + ++ R A Y FF S + +HT LK +T YYY+ G
Sbjct: 48 SSAVRYWSEKNGRKRIAKG----KMSTYRFFNYSSGFI-HHTTIRK--LKYNTKYYYEVG 100
Query: 88 DPSIPAMSGTYYFRTMPDSSPTSYPSRIAIVGDVGLTYNTTSTVSH--MISNRPDLILLV 145
+ + + F T P + P ++GD+G ++++ +T+SH + + +L V
Sbjct: 101 ---LRNTTRRFSFITPPQTG-LDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFV 156
Query: 146 GDVTYANLY 154
GD++YA+ Y
Sbjct: 157 GDLSYADRY 165
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 28 TSVVRYGTLRSQLNRRATCHSLVSNQLYPFFRPSKLHLWNHTQCSSHILKPDTLYYYQCG 87
+S VRY + ++ R A Y FF S + +HT LK +T YYY+ G
Sbjct: 46 SSAVRYWSEKNGRKRIAKG----KMSTYRFFNYSSGFI-HHTTIRK--LKYNTKYYYEVG 98
Query: 88 DPSIPAMSGTYYFRTMPDSSPTSYPSRIAIVGDVGLTYNTTSTVSH--MISNRPDLILLV 145
+ + + F T P + P ++GD+G ++++ +T+SH + + +L V
Sbjct: 99 ---LRNTTRRFSFITPPQTG-LDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFV 154
Query: 146 GDVTYANLY 154
GD++YA+ Y
Sbjct: 155 GDLSYADRY 163
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 28 TSVVRYGTLRSQLNRRATCHSLVSNQLYPFFRPSKLHLWNHTQCSSHILKPDTLYYYQCG 87
+S VRY + ++ R A Y FF S + +HT LK +T YYY+ G
Sbjct: 54 SSAVRYWSEKNGRKRIAKG----KMSTYRFFNYSSGFI-HHTTIRK--LKYNTKYYYEVG 106
Query: 88 DPSIPAMSGTYYFRTMPDSSPTSYPSRIAIVGDVGLTYNTTSTVSH--MISNRPDLILLV 145
+ + + F T P + P ++GD+G ++++ +T+SH + + +L V
Sbjct: 107 ---LRNTTRRFSFITPPQTG-LDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFV 162
Query: 146 GDVTYANLY 154
GD++YA+ Y
Sbjct: 163 GDLSYADRY 171
>pdb|2R57|A Chain A, Crystal Structure Of The Two Mbt Repeats From Sex-Comb On
Midleg (Scm)
pdb|2R58|A Chain A, Crystal Structure Of The Two Mbt Repeats From Sex-Comb On
Midleg (Scm) In Complex With Di-Methyl Lysine
pdb|2R5A|A Chain A, Crystal Structure Of The Two Mbt Repeats From Sex-Comb On
Midleg (Scm) In Complex With Methyl Lysine
pdb|2R5M|A Chain A, Crystal Structure Of The Two Mbt Repeats From Sex-Comb On
Midleg (Scm) In Complex With Peptide R-(Me)k-S
Length = 265
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 12 EFQIGNNIKSLNPKSVTS---VVRYGTLRSQLNRRATCHSLVSNQLYPFFRPSKLHLWNH 68
+F+IG +++L+P++VTS G L S+L R S N + +++H H
Sbjct: 34 DFKIGMKLEALDPRNVTSTCIATVVGVLGSRLRLRLD-GSDSQNDFWRLVDSTEIHAIGH 92
Query: 69 TQCSSHILKP 78
+ + +L+P
Sbjct: 93 CEKNGGMLQP 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,070,176
Number of Sequences: 62578
Number of extensions: 239070
Number of successful extensions: 429
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 6
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)