BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047690
(811 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/454 (46%), Positives = 307/454 (67%), Gaps = 10/454 (2%)
Query: 318 NAKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAK 377
+ +V F+DV G +EA +E+ E V FLK+P K+ +GA++PKG LLVGPPGTGKTLLA+
Sbjct: 8 SGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLAR 67
Query: 378 ATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXX 437
A AGE+ VPF ISGSDF+E+FVGVG +RVR+LF +A+ AP I+FIDEID
Sbjct: 68 AVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEID-AVGRHRGA 126
Query: 438 XXXXXNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKP 497
+DERE TLNQLLVEMDGF + G++V+A TNRPDILD ALLRPGRFD++I +D P
Sbjct: 127 GLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPP 186
Query: 498 DIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQV 557
D+ GR +I +++ + L + + + +A TPGF GAD+ N+ NEAAL+AAR ++
Sbjct: 187 DMLGRKKILEIHTRNKPLAEDVNL--EIIAKRTPGFVGADLENLVNEAALLAAREGRDKI 244
Query: 558 TMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRG 617
TM+ FE AIDRVI G +K+ +IS E+R +AYHE+GHAV + + EP+ +++I+PRG
Sbjct: 245 TMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRG 304
Query: 618 TAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTY 676
ALG+ ++P E+ L+++ +L D LGGRAAE+V+ G +++GA ND+E+ T++
Sbjct: 305 YKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIAR 364
Query: 677 AQVAVYGFSDKVGLLSFPQREDTFEMSKP------YSSKTGAIIDAEVREWVGKAYVRTV 730
V G S+++G L++ + E + K YS + + ID EV++ V Y R
Sbjct: 365 NMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAK 424
Query: 731 QLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGE 764
++I ++++ + I E+LLEKE + D+L R+L E
Sbjct: 425 EIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/454 (46%), Positives = 306/454 (67%), Gaps = 10/454 (2%)
Query: 318 NAKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAK 377
+ +V F+DV G +EA +E+ E V FLK+P K+ +GA++PKG LLVGPPGTG TLLA+
Sbjct: 8 SGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLAR 67
Query: 378 ATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXX 437
A AGE+ VPF ISGSDF+E+FVGVG +RVR+LF +A+ AP I+FIDEID
Sbjct: 68 AVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEID-AVGRHRGA 126
Query: 438 XXXXXNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKP 497
+DERE TLNQLLVEMDGF + G++V+A TNRPDILD ALLRPGRFD++I +D P
Sbjct: 127 GLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPP 186
Query: 498 DIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQV 557
D+ GR +I +++ + L + + + +A TPGF GAD+ N+ NEAAL+AAR ++
Sbjct: 187 DMLGRKKILEIHTRNKPLAEDVNL--EIIAKRTPGFVGADLENLVNEAALLAAREGRDKI 244
Query: 558 TMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRG 617
TM+ FE AIDRVI G +K+ +IS E+R +AYHE+GHAV + + EP+ +++I+PRG
Sbjct: 245 TMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRG 304
Query: 618 TAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTY 676
ALG+ ++P E+ L+++ +L D LGGRAAE+V+ G +++GA ND+E+ T++
Sbjct: 305 YKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIAR 364
Query: 677 AQVAVYGFSDKVGLLSFPQREDTFEMSKP------YSSKTGAIIDAEVREWVGKAYVRTV 730
V G S+++G L++ + E + K YS + + ID EV++ V Y R
Sbjct: 365 NMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAK 424
Query: 731 QLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGE 764
++I ++++ + I E+LLEKE + D+L R+L E
Sbjct: 425 EIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust.
Identities = 218/444 (49%), Positives = 296/444 (66%), Gaps = 7/444 (1%)
Query: 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAG 381
KV F+DVAG +EAK+E+ E V FLKNP ++ ++GA+IPKG LLVGPPG GKT LA+A AG
Sbjct: 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86
Query: 382 ESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXXXX 441
E+ VPF++ SGSDF+EMFVGVG +RVR+LF+ A++ AP I+FIDEID
Sbjct: 87 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID-AVGRKRGSGVGG 145
Query: 442 XNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKG 501
NDERE TLNQLLVEMDGF +VV+A TNRPDILD ALLRPGRFDRQI ID PD+KG
Sbjct: 146 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 205
Query: 502 RDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEH 561
R+QI +++ + L + LA TPGF GAD+ N+ NEAAL+AAR ++TM+
Sbjct: 206 REQILRIHARGKPLAEDVDLAL--LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 263
Query: 562 FEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAAL 621
E A DRV+ KK+ V+S +RR AYHE+GHA+A FLEHA+ + KVTIVPRG AL
Sbjct: 264 LEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGR-AL 322
Query: 622 GFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAV 681
GF + L ++++L D + L GRAAE+++ ++TGA+ND + T++ +
Sbjct: 323 GFMMPRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRMITE 382
Query: 682 YGFSDKVGLLSFPQREDTFEMS---KPYSSKTGAIIDAEVREWVGKAYVRTVQLIEEHKE 738
+G + G +++ REDT+ + YS +T ID VR + + Y R L+ E +E
Sbjct: 383 WGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKRE 442
Query: 739 HVAQIAELLLEKEVLHQDDLLRVL 762
+ ++AE LLE+E L ++ RV+
Sbjct: 443 VLERVAETLLERETLTAEEFQRVV 466
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 379 bits (974), Expect = e-105, Method: Compositional matrix adjust.
Identities = 218/444 (49%), Positives = 296/444 (66%), Gaps = 7/444 (1%)
Query: 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAG 381
KV F+DVAG +EAK+E+ E V FLKNP ++ ++GA+IPKG LLVGPPG GKT LA+A AG
Sbjct: 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
Query: 382 ESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXXXX 441
E+ VPF++ SGSDF+EMFVGVG +RVR+LF+ A++ AP I+FIDEID
Sbjct: 96 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID-AVGRKRGSGVGG 154
Query: 442 XNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKG 501
NDERE TLNQLLVEMDGF +VV+A TNRPDILD ALLRPGRFDRQI ID PD+KG
Sbjct: 155 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214
Query: 502 RDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEH 561
R+QI +++ + L + LA TPGF GAD+ N+ NEAAL+AAR ++TM+
Sbjct: 215 REQILRIHARGKPLAEDVDLAL--LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 272
Query: 562 FEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAAL 621
E A DRV+ KK+ V+S +RR AYHE+GHA+A FLEHA+ + KVTIVPRG AL
Sbjct: 273 LEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGR-AL 331
Query: 622 GFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAV 681
GF + L ++++L D + L GRAAE+++ ++TGA+ND + T++ +
Sbjct: 332 GFMMPRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRMITE 391
Query: 682 YGFSDKVGLLSFPQREDTFEMS---KPYSSKTGAIIDAEVREWVGKAYVRTVQLIEEHKE 738
+G + G +++ REDT+ + YS +T ID VR + + Y R L+ E +E
Sbjct: 392 WGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKRE 451
Query: 739 HVAQIAELLLEKEVLHQDDLLRVL 762
+ ++AE LLE+E L ++ RV+
Sbjct: 452 VLERVAETLLERETLTAEEFQRVV 475
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 306 bits (785), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 148/260 (56%), Positives = 193/260 (74%)
Query: 323 VYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGE 382
V F+DVAG EAK E+ EFV +LK+P ++ LGAK+PKGALL+GPPG GKTLLAKA A E
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62
Query: 383 SGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXXXXX 442
+ VPFL+++G++F+E+ G+G +RVR+LF+EAR AP I++IDEID
Sbjct: 63 AQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFS 122
Query: 443 NDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGR 502
N E E TLNQLLVEMDG GTT V+V+A TNR DILD AL+RPGR DR + ID P ++ R
Sbjct: 123 NTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQER 182
Query: 503 DQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHF 562
+IF+ +LK +KL ++YSQRLA LTPGF+GADIAN+CNEAAL AAR ++ V +F
Sbjct: 183 REIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNF 242
Query: 563 EAAIDRVIGGLEKKNKVISK 582
E A++RV+ G KK+K++SK
Sbjct: 243 EYAVERVLAGTAKKSKILSK 262
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 306 bits (784), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 152/258 (58%), Positives = 192/258 (74%), Gaps = 3/258 (1%)
Query: 320 KNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKAT 379
K V F+D+AG +EAK+E++E V FLK P +Y +LGAKIPKG LLVGPPGTGKTLLAKA
Sbjct: 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 64
Query: 380 AGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXX 439
AGE+ VPF S+ GS F+EMFVG+G SRVR+LF+ A++ APSIIFIDEID
Sbjct: 65 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV 124
Query: 440 XXXNDERESTLNQLLVEMDGFGT-TAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPD 498
NDERE TLNQLL EMDGFG+ A V+V+A TNRP+ILD AL+RPGRFDRQ+ +DKPD
Sbjct: 125 VSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184
Query: 499 IKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVT 558
GR +I +V++K +KL ++ + Q +A LT G AGAD+AN+ NEAAL+A R +V
Sbjct: 185 FNGRVEILKVHIKGVKLANDVNL--QEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242
Query: 559 MEHFEAAIDRVIGGLEKK 576
+H + A++R I GLEKK
Sbjct: 243 QQHLKEAVERGIAGLEKK 260
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 304 bits (778), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 147/253 (58%), Positives = 189/253 (74%), Gaps = 3/253 (1%)
Query: 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAG 381
K F DVAGCDEAK+E+ E V +L+ P +++ LG KIPKG L+VGPPGTGKTLLAKA AG
Sbjct: 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67
Query: 382 ESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXXXX 441
E+ VPF +ISGSDF+EMFVGVG SRVR++F++A++ AP IIFIDEID
Sbjct: 68 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEID-AVGRQRGAGLGG 126
Query: 442 XNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKG 501
+DERE TLNQ+LVEMDGF G++VIA TNRPD+LD ALLRPGRFDRQ+ + PD++G
Sbjct: 127 GHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 186
Query: 502 RDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEH 561
R+QI +V+++++ L P + +A TPGF+GAD+AN+ NEAAL AARG V+M
Sbjct: 187 REQILKVHMRRVPL--APDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVE 244
Query: 562 FEAAIDRVIGGLE 574
FE A D+++ GLE
Sbjct: 245 FEKAKDKIMMGLE 257
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 247 bits (631), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/244 (58%), Positives = 177/244 (72%), Gaps = 3/244 (1%)
Query: 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAG 381
KV F+DVAG +EAK+E+ E V FLKNP ++ ++GA+IPKG LLVGPPG GKT LA+A AG
Sbjct: 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
Query: 382 ESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXXXX 441
E+ VPF++ SGSDF+EMFVGVG +RVR+LF+ A++ AP I+FIDEID
Sbjct: 96 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID-AVGRKRGSGVGG 154
Query: 442 XNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKG 501
NDERE TLNQLLVEMDGF +VV+A TNRPDILD ALLRPGRFDRQI ID PD+KG
Sbjct: 155 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214
Query: 502 RDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEH 561
R+QI +++ + L + LA TPGF GAD+ N+ NEAAL+AAR ++TM+
Sbjct: 215 REQILRIHARGKPLAEDVDLAL--LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 272
Query: 562 FEAA 565
E A
Sbjct: 273 LEEA 276
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 247 bits (631), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/244 (58%), Positives = 177/244 (72%), Gaps = 3/244 (1%)
Query: 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAG 381
KV F+DVAG +EAK+E+ E V FLKNP ++ ++GA+IPKG LLVGPPG GKT LA+A AG
Sbjct: 12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71
Query: 382 ESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXXXX 441
E+ VPF++ SGSDF+EMFVGVG +RVR+LF+ A++ AP I+FIDEID
Sbjct: 72 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID-AVGRKRGSGVGG 130
Query: 442 XNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKG 501
NDERE TLNQLLVEMDGF +VV+A TNRPDILD ALLRPGRFDRQI ID PD+KG
Sbjct: 131 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190
Query: 502 RDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEH 561
R+QI +++ + L + LA TPGF GAD+ N+ NEAAL+AAR ++TM+
Sbjct: 191 REQILRIHARGKPLAEDVDLAL--LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 248
Query: 562 FEAA 565
E A
Sbjct: 249 LEEA 252
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/263 (42%), Positives = 162/263 (61%), Gaps = 6/263 (2%)
Query: 309 KAHVTKVDKNAKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGP 367
+A +VD+ + V + D+ G ++ QEI E V LK+P +E +G + PKG LL GP
Sbjct: 2 RAKAMEVDE--RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGP 59
Query: 368 PGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEI 427
PGTGKTLLAKA A E+ F+ + GS+ ++ F+G G S V+++F+ A++ APSIIFIDEI
Sbjct: 60 PGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEI 119
Query: 428 DXXXXXXXXXXXXXXNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGR 487
D + E + TL QLL EMDGF V +I TNRPDILD A+LRPGR
Sbjct: 120 D-AIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGR 178
Query: 488 FDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAAL 547
FDR I + PD KGR +I +++ +K+ L + + + +A +T G GA++ +C EA +
Sbjct: 179 FDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNL--EEIAKMTEGCVGAELKAICTEAGM 236
Query: 548 IAARGENSQVTMEHFEAAIDRVI 570
A R VTM+ F A+++++
Sbjct: 237 NAIRELRDYVTMDDFRKAVEKIM 259
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/274 (39%), Positives = 153/274 (55%), Gaps = 11/274 (4%)
Query: 312 VTKVDKNAKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGT 370
V K+DK+ + D+ G + QEI E V L +P YE++G K PKG +L G PGT
Sbjct: 170 VMKMDKSPTES--YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGT 227
Query: 371 GKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXX 430
GKTLLAKA A ++ FL I GS+ ++ ++G GP R +F+ A + APSI+FIDEID
Sbjct: 228 GKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAI 287
Query: 431 XXXXXXXXXXXXNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDR 490
E + T+ +LL ++DGF V VI TN+ + LD AL+RPGR DR
Sbjct: 288 GTKRYDSNSGGER-EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDR 346
Query: 491 QITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAA 550
+I + PD+ + +I ++ K+ L + + + L +GADI +C EA L+A
Sbjct: 347 KILFENPDLSTKKKILGIHTSKMNLSEDVNL--ETLVTTKDDLSGADIQAMCTEAGLLAL 404
Query: 551 RGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLE 584
R QVT E F+ A +RV+ KNKV LE
Sbjct: 405 RERRMQVTAEDFKQAKERVM-----KNKVEENLE 433
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 178 bits (452), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 148/257 (57%), Gaps = 4/257 (1%)
Query: 328 VAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP 386
V G + +EI E + +K+P +E LG PKG +L GPPGTGKTLLA+A A +
Sbjct: 150 VGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209
Query: 387 FLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXXXXXNDER 446
F+ +SG++ ++ ++G G VR LF AR+ APSIIF+DEID + E
Sbjct: 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID-SIGSTRVEGSGGGDSEV 268
Query: 447 ESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIF 506
+ T+ +LL ++DGF T+ + +I TNR DILD ALLRPGR DR+I P + R +I
Sbjct: 269 QRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEIL 328
Query: 507 QVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAI 566
+++ +K+ L +++A G +GAD+ VC EA + A R VT E FE A+
Sbjct: 329 RIHSRKMNLTR--GINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAV 386
Query: 567 DRVIGGLEKKNKVISKL 583
+V+ ++ ++KL
Sbjct: 387 GKVMNKNQETAISVAKL 403
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 178 bits (452), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 147/265 (55%), Gaps = 4/265 (1%)
Query: 312 VTKVDKNAKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGT 370
VT + K V + DV GC + +++ E V L +P ++ LG PKG LL GPPGT
Sbjct: 195 VTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGT 254
Query: 371 GKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXX 430
GKTL A+A A + F+ + GS+ ++ +VG G VR LF+ AR IIF DEID
Sbjct: 255 GKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAV 314
Query: 431 XXXXXXXXXXXXNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDR 490
N E + T+ +L+ ++DGF + V+ TNRP+ LD ALLRPGR DR
Sbjct: 315 GGARFDDGAGGDN-EVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDR 373
Query: 491 QITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAA 550
++ PD++GR IF+++ K + ++ + + ++ L P GA++ +VC EA + A
Sbjct: 374 KVEFSLPDLEGRANIFRIHSKSMSVERGIRW--ELISRLCPNSTGAELRSVCTEAGMFAI 431
Query: 551 RGENSQVTMEHFEAAIDRVIGGLEK 575
R T + F A+D+VI G +K
Sbjct: 432 RARRKVATEKDFLKAVDKVISGYKK 456
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 148/258 (57%), Gaps = 7/258 (2%)
Query: 325 FRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 383
+ DV G D+ +E++E + +K K++D+G + PKGAL+ GPPGTGKTLLA+A A ++
Sbjct: 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239
Query: 384 GVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXXXXXN 443
FL ++ ++M++G G VR+ F A++ AP+IIFIDE+D +
Sbjct: 240 NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELD-AIGTKRFDSEKSGD 298
Query: 444 DERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRD 503
E + T+ +LL ++DGF + V V+A TNR D+LD ALLR GR DR+I P R
Sbjct: 299 REVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRA 358
Query: 504 QIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFE 563
QI Q++ +K+ D + ++ Q LA T F GA + V EA +IA R S V E F
Sbjct: 359 QILQIHSRKMTTDDDINW--QELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFV 416
Query: 564 AAIDRVIGGLEKKNKVIS 581
I V +K+K +S
Sbjct: 417 EGISEVQA---RKSKSVS 431
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 172 bits (435), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 141/241 (58%), Gaps = 7/241 (2%)
Query: 321 NKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKAT 379
N+V + DV GC + +I E V L++P ++ +G K P+G LL GPPGTGKTL+A+A
Sbjct: 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258
Query: 380 AGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXX 439
A E+G F I+G + M G S +R F+EA + AP+IIFIDE+D
Sbjct: 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD----AIAPKRE 314
Query: 440 XXXNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDI 499
+ ++QLL MDG A V+V+A TNRP+ +D AL R GRFDR++ I PD
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 500 KGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTM 559
GR +I Q++ K +KL + +++A T G GAD+A +C+EAAL A R + + +
Sbjct: 375 TGRLEILQIHTKNMKLADDVDL--EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
Query: 560 E 560
E
Sbjct: 433 E 433
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 172 bits (435), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 141/241 (58%), Gaps = 7/241 (2%)
Query: 321 NKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKAT 379
N+V + DV GC + +I E V L++P ++ +G K P+G LL GPPGTGKTL+A+A
Sbjct: 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258
Query: 380 AGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXX 439
A E+G F I+G + M G S +R F+EA + AP+IIFIDE+D
Sbjct: 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD----AIAPKRE 314
Query: 440 XXXNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDI 499
+ ++QLL MDG A V+V+A TNRP+ +D AL R GRFDR++ I PD
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 500 KGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTM 559
GR +I Q++ K +KL + +++A T G GAD+A +C+EAAL A R + + +
Sbjct: 375 TGRLEILQIHTKNMKLADDVDL--EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
Query: 560 E 560
E
Sbjct: 433 E 433
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 128/229 (55%), Gaps = 4/229 (1%)
Query: 322 KVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATA 380
+V + D+ G ++ K+E+ E V + +++P K+ G KG L GPPG GKTLLAKA A
Sbjct: 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532
Query: 381 GESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXXX 440
E F+SI G + + M+ G + VR +F +ARQ AP ++F DE+D
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 441 XXNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIK 500
+ +NQ+L EMDG T V +I TNRPDI+D A+LRPGR D+ I I PD K
Sbjct: 593 GGG-AADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 651
Query: 501 GRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIA 549
R I + L+K + + + LA +T GF+GAD+ +C A +A
Sbjct: 652 SRVAILKANLRKSPVAKDVDL--EFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 141/241 (58%), Gaps = 7/241 (2%)
Query: 321 NKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKAT 379
N+V + D+ GC + +I E V L++P ++ +G K P+G LL GPPGTGKTL+A+A
Sbjct: 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258
Query: 380 AGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXX 439
A E+G F I+G + M G S +R F+EA + AP+IIFIDE+D
Sbjct: 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD----AIAPKRE 314
Query: 440 XXXNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDI 499
+ ++QLL MDG A V+V+A TNRP+ +D AL R GRFDR++ I PD
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 500 KGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTM 559
GR +I Q++ K +KL + +++A T G GAD+A +C+EAAL A R + + +
Sbjct: 375 TGRLEILQIHTKNMKLADDVDL--EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
Query: 560 E 560
E
Sbjct: 433 E 433
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 141/241 (58%), Gaps = 7/241 (2%)
Query: 321 NKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKAT 379
N+V + D+ GC + +I E V L++P ++ +G K P+G LL GPPGTGKTL+A+A
Sbjct: 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258
Query: 380 AGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXX 439
A E+G F I+G + M G S +R F+EA + AP+IIFIDE+D
Sbjct: 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD----AIAPKRE 314
Query: 440 XXXNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDI 499
+ ++QLL MDG A V+V+A TNRP+ +D AL R GRFDR++ I PD
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 500 KGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTM 559
GR +I Q++ K +KL + +++A T G GAD+A +C+EAAL A R + + +
Sbjct: 375 TGRLEILQIHTKNMKLADDVDL--EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
Query: 560 E 560
E
Sbjct: 433 E 433
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 141/241 (58%), Gaps = 7/241 (2%)
Query: 321 NKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKAT 379
N+V + D+ GC + +I E V L++P ++ +G K P+G LL GPPGTGKTL+A+A
Sbjct: 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258
Query: 380 AGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXX 439
A E+G F I+G + M G S +R F+EA + AP+IIFIDE+D
Sbjct: 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD----AIAPKRE 314
Query: 440 XXXNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDI 499
+ ++QLL MDG A V+V+A TNRP+ +D AL R GRFDR++ I PD
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 500 KGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTM 559
GR +I Q++ K +KL + +++A T G GAD+A +C+EAAL A R + + +
Sbjct: 375 TGRLEILQIHTKNMKLADDVDL--EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
Query: 560 E 560
E
Sbjct: 433 E 433
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 141/241 (58%), Gaps = 7/241 (2%)
Query: 321 NKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKAT 379
N+V + D+ GC + +I E V L++P ++ +G K P+G LL GPPGTGKTL+A+A
Sbjct: 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258
Query: 380 AGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXX 439
A E+G F I+G + M G S +R F+EA + AP+IIFIDE+D
Sbjct: 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD----AIAPKRE 314
Query: 440 XXXNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDI 499
+ ++QLL MDG A V+V+A TNRP+ +D AL R GRFDR++ I PD
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 500 KGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTM 559
GR +I Q++ K +KL + +++A T G GAD+A +C+EAAL A R + + +
Sbjct: 375 TGRLEILQIHTKNMKLADDVDL--EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
Query: 560 E 560
E
Sbjct: 433 E 433
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 128/229 (55%), Gaps = 4/229 (1%)
Query: 322 KVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATA 380
+V + D+ G ++ K+E+ E V + +++P K+ G KG L GPPG GKTLLAKA A
Sbjct: 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532
Query: 381 GESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXXX 440
E F+SI G + + M+ G + VR +F +ARQ AP ++F DE+D
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 441 XXNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIK 500
+ +NQ+L EMDG T V +I TNRPDI+D A+LRPGR D+ I I PD K
Sbjct: 593 GGG-AADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 651
Query: 501 GRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIA 549
R I + L+K + + + LA +T GF+GAD+ +C A +A
Sbjct: 652 SRVAILKANLRKSPVAKDVDL--EFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 128/229 (55%), Gaps = 4/229 (1%)
Query: 322 KVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATA 380
+V + D+ G ++ K+E+ E V + +++P K+ G KG L GPPG GKTLLAKA A
Sbjct: 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 70
Query: 381 GESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXXX 440
E F+SI G + + M+ G + VR +F +ARQ AP ++F DE+D
Sbjct: 71 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 130
Query: 441 XXNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIK 500
+ +NQ+L EMDG T V +I TNRPDI+D A+LRPGR D+ I I PD K
Sbjct: 131 GGG-AADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 189
Query: 501 GRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIA 549
R I + L+K + + + LA +T GF+GAD+ +C A +A
Sbjct: 190 SRVAILKANLRKSPVAKDVDL--EFLAKMTNGFSGADLTEICQRACKLA 236
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 135/251 (53%), Gaps = 4/251 (1%)
Query: 320 KNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKA 378
+ ++ F + G E +E+ E + LKNP ++ +G K PKG LL GPPGTGKTLLAKA
Sbjct: 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKA 234
Query: 379 TAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXX 438
A G F+ S ++ ++G +R +F A++ P IIF+DE+D
Sbjct: 235 VAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVD-AIGGRRFSE 293
Query: 439 XXXXNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPD 498
+ E + TL +LL +MDGF +I TNRPD LD ALLRPGR DR++ I P+
Sbjct: 294 GTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPN 353
Query: 499 IKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVT 558
GR +IF+++ K+K E + + ++ GF GADI N EA A R + +
Sbjct: 354 EAGRLEIFKIHTAKVKKTGEFDFEAA--VKMSDGFNGADIRNCATEAGFFAIRDDRDHIN 411
Query: 559 MEHFEAAIDRV 569
+ A+ +V
Sbjct: 412 PDDLMKAVRKV 422
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/260 (39%), Positives = 137/260 (52%), Gaps = 9/260 (3%)
Query: 310 AHVTKVDKNAKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPP 368
+ ++ + +N K V + DV G D KQEI E V L YE +G P+G LL GPP
Sbjct: 156 SSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPP 215
Query: 369 GTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEID 428
GTGKT+L KA A + F+ ++GS+F+ ++G GP VR++F+ AR+ APSIIFIDE+D
Sbjct: 216 GTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVD 275
Query: 429 XXXXXXXXXXXXXXNDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRF 488
+ E + L +LL +MDGF + V VI TNR D LD ALLRPGR
Sbjct: 276 -SIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRL 334
Query: 489 DRQITIDKPDIKGRDQ---IFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEA 545
DR+I P ++ R + IF K+ L E S L +GA IA + EA
Sbjct: 335 DRKIEF--PSLRDRRERRLIFGTIASKMSLAPEADLDS--LIIRNDSLSGAVIAAIMQEA 390
Query: 546 ALIAARGENSQVTMEHFEAA 565
L A R + E A
Sbjct: 391 GLRAVRKNRYVILQSDLEEA 410
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 147/277 (53%), Gaps = 29/277 (10%)
Query: 323 VYFRDVAGCDEAKQEI-MEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAG 381
V + D+ ++ ++E+ M + ++NP +++ LG P G LL GPPG GKTLLAKA A
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66
Query: 382 ESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXXXX 441
ESG+ F+S+ G + + M+VG VR +FQ A+ AP +IF DE+D
Sbjct: 67 ESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVD---------ALCP 117
Query: 442 XNDERES-----TLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDK 496
+RE+ +NQLL EMDG V ++A TNRPDI+D A+LRPGR D+ + +
Sbjct: 118 RRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGL 177
Query: 497 PDIKGRDQIFQVYLK---KIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGE 553
P R I + K K LD + + + + GAD++ + EA++ A R E
Sbjct: 178 PPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQE 237
Query: 554 NS-----------QVTMEHFEAAIDRVIGGLEKKNKV 579
+ +V+ +HFE A +V + KK+++
Sbjct: 238 MARQKSGNEKGELKVSHKHFEEAFKKVRSSISKKDQI 274
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 137/266 (51%), Gaps = 28/266 (10%)
Query: 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIP-KGALLVGPPGTGKTLLAKATA 380
KV + D+AG D AKQ + E V L + R G + P KG LL GPPG GKTLLA+A A
Sbjct: 17 KVEWTDIAGQDVAKQALQEMV-ILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVA 75
Query: 381 GESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXXX 440
E FL+IS + +VG G VR LF AR PSIIFIDE+D
Sbjct: 76 TECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVD----SLLSERSS 131
Query: 441 XXNDERESTLNQLLVEMDGF-GTTAG--VVVIAGTNRPDILDKALLRPGRFDRQITIDKP 497
++ + LVE DG G G +VV+A TNRP LD+A LR RF +++ + P
Sbjct: 132 SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLP 189
Query: 498 DIKGRDQIFQVYLKK--IKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENS 555
D + R+ + L+K LD E +RLA +T G++G+D+ + +AAL R N
Sbjct: 190 DEQTRELLLNRLLQKQGSPLDTEA---LRRLAKITDGYSGSDLTALAKDAALEPIRELNV 246
Query: 556 Q------------VTMEHFEAAIDRV 569
+ +T + F +++ R+
Sbjct: 247 EQVKCLDISAMRAITEQDFHSSLKRI 272
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 126 bits (316), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 125/244 (51%), Gaps = 30/244 (12%)
Query: 320 KNKVYFRDVAGCDEAKQEIME-------FVHFLKNPRKYEDLGAKIPKGALLVGPPGTGK 372
K V + DVAG + AK+ + E F H K RK G LL GPPGTGK
Sbjct: 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKP-------TSGILLYGPPGTGK 97
Query: 373 TLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXX 432
+ LAKA A E+ F S+S SD + ++G V+ LF AR+ PSIIFID++D
Sbjct: 98 SYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD---- 153
Query: 433 XXXXXXXXXXNDERESTLNQLLVEMDGFGT-TAGVVVIAGTNRPDILDKALLRPGRFDRQ 491
++ +LLV+M+G G + GV+V+ TN P LD A+ R RF+R+
Sbjct: 154 ALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERR 211
Query: 492 ITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQR----LAALTPGFAGADIANVCNEAAL 547
I I PD+ R +F+ I + PS ++ L A+T G++G+DIA V +A +
Sbjct: 212 IYIPLPDLAARTTMFE-----INVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALM 266
Query: 548 IAAR 551
R
Sbjct: 267 QPIR 270
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 126 bits (316), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 123/240 (51%), Gaps = 22/240 (9%)
Query: 320 KNKVYFRDVAGCDEAKQEIME-------FVHFLKNPRKYEDLGAKIPKGALLVGPPGTGK 372
K V + DVAG + AK+ + E F H K RK G LL GPPGTGK
Sbjct: 21 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPT-------SGILLYGPPGTGK 73
Query: 373 TLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXX 432
+ LAKA A E+ F S+S SD + ++G V+ LF AR+ PSIIFIDE+D
Sbjct: 74 SYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVD---- 129
Query: 433 XXXXXXXXXXNDERESTLNQLLVEMDGFGT-TAGVVVIAGTNRPDILDKALLRPGRFDRQ 491
++ +LLV+M+G G + GV+V+ TN P LD A+ R RF+R+
Sbjct: 130 ALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERR 187
Query: 492 ITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAAR 551
I I PD+ R +F++ + Y + L A+T G++G+DIA V +A + R
Sbjct: 188 IYIPLPDLAARTTMFEINVGDTPCVLTKEDY-RTLGAMTEGYSGSDIAVVVKDALMQPIR 246
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 123/240 (51%), Gaps = 22/240 (9%)
Query: 320 KNKVYFRDVAGCDEAKQEIME-------FVHFLKNPRKYEDLGAKIPKGALLVGPPGTGK 372
K V + DVAG + AK+ + E F H K RK G LL GPPGTGK
Sbjct: 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPT-------SGILLYGPPGTGK 64
Query: 373 TLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXX 432
+ LAKA A E+ F S+S SD + ++G V+ LF AR+ PSIIFID++D
Sbjct: 65 SYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD---- 120
Query: 433 XXXXXXXXXXNDERESTLNQLLVEMDGFGT-TAGVVVIAGTNRPDILDKALLRPGRFDRQ 491
++ +LLV+M+G G + GV+V+ TN P LD A+ R RF+R+
Sbjct: 121 ALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERR 178
Query: 492 ITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAAR 551
I I PD+ R +F++ + Y + L A+T G++G+DIA V +A + R
Sbjct: 179 IYIPLPDLAARTTMFEINVGDTPCVLTKEDY-RTLGAMTEGYSGSDIAVVVKDALMQPIR 237
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 123/240 (51%), Gaps = 22/240 (9%)
Query: 320 KNKVYFRDVAGCDEAKQEIME-------FVHFLKNPRKYEDLGAKIPKGALLVGPPGTGK 372
K V + DVAG + AK+ + E F H K RK G LL GPPGTGK
Sbjct: 30 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPT-------SGILLYGPPGTGK 82
Query: 373 TLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXX 432
+ LAKA A E+ F S+S SD + ++G V+ LF AR+ PSIIFID++D
Sbjct: 83 SYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD---- 138
Query: 433 XXXXXXXXXXNDERESTLNQLLVEMDGFGT-TAGVVVIAGTNRPDILDKALLRPGRFDRQ 491
++ +LLV+M+G G + GV+V+ TN P LD A+ R RF+R+
Sbjct: 139 ALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERR 196
Query: 492 ITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAAR 551
I I PD+ R +F++ + Y + L A+T G++G+DIA V +A + R
Sbjct: 197 IYIPLPDLAARTTMFEINVGDTPCVLTKEDY-RTLGAMTEGYSGSDIAVVVKDALMQPIR 255
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 126/234 (53%), Gaps = 15/234 (6%)
Query: 323 VYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDL--GAKIP-KGALLVGPPGTGKTLLAKAT 379
V + DVAG + AK+ + E V P K+ L G + P +G LL GPPGTGK+ LAKA
Sbjct: 131 VKWSDVAGLEGAKEALKEAVIL---PIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV 187
Query: 380 AGESG-VPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXX 438
A E+ F SIS SD + ++G V+NLFQ AR+ PSIIFIDEID
Sbjct: 188 ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEID----SLCGSR 243
Query: 439 XXXXNDERESTLNQLLVEMDGFGT-TAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKP 497
++ + LV+M G G G++V+ TN P +LD A+ R RF+++I I P
Sbjct: 244 SENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLP 301
Query: 498 DIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAAR 551
+ R +F+++L + + + Q L T G++GADI+ + +A + R
Sbjct: 302 EAHARAAMFRLHLGSTQNSLTEADF-QELGRKTDGYSGADISIIVRDALMQPVR 354
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 130/246 (52%), Gaps = 18/246 (7%)
Query: 323 VYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDL--GAKIP-KGALLVGPPGTGKTLLAKAT 379
V + DVAG + AK+ + E V P K+ L G + P +G LL GPPGTGK+ LAKA
Sbjct: 9 VKWSDVAGLEGAKEALKEAVIL---PIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV 65
Query: 380 AGESG-VPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXX 438
A E+ F SIS SD + ++G V+NLFQ AR+ PSIIFIDEID
Sbjct: 66 ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEID----SLCGSR 121
Query: 439 XXXXNDERESTLNQLLVEMDGFGT-TAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKP 497
++ + LV+M G G G++V+ TN P +LD A+ R RF+++I I P
Sbjct: 122 SENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLP 179
Query: 498 DIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQV 557
+ R +F+++L + + + + L T G++GADI+ + +A + R S
Sbjct: 180 EPHARAAMFKLHLGTTQNSLTEADFRE-LGRKTDGYSGADISIIVRDALMQPVRKVQSAT 238
Query: 558 TMEHFE 563
HF+
Sbjct: 239 ---HFK 241
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 125/233 (53%), Gaps = 21/233 (9%)
Query: 323 VYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIP-KGALLVGPPGTGKTLLAKATAG 381
V F D+AG D AKQ + E V L + R G + P +G LL GPPG GKT+LAKA A
Sbjct: 112 VKFDDIAGQDLAKQALQEIV-ILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170
Query: 382 ESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXXXX 441
ES F +IS + +VG G VR LF AR+ PSIIFID++D
Sbjct: 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVD----SLLCERREG 226
Query: 442 XNDERESTLNQLLVEMDGFGTTAG---VVVIAGTNRPDILDKALLRPGRFDRQITIDKPD 498
+D + L+E DG +AG V+V+ TNRP LD+A+LR RF +++ + P+
Sbjct: 227 EHDASRRLKTEFLIEFDGV-QSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPN 283
Query: 499 IKGRDQIFQVYLKKIKLDHEPSYYSQR----LAALTPGFAGADIANVCNEAAL 547
+ R + + L K + S +Q+ LA +T G++G+D+ + +AAL
Sbjct: 284 EETRLLLLKNLLCK-----QGSPLTQKELAQLARMTDGYSGSDLTALAKDAAL 331
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 118/231 (51%), Gaps = 17/231 (7%)
Query: 323 VYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAG 381
V + D+AG + AK I E V + + P + L PKG LL GPPGTGKTL+ K A
Sbjct: 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP-PKGILLFGPPGTGKTLIGKCIAS 139
Query: 382 ESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDXXXXXXXXXXXXX 441
+SG F SIS S +VG G VR LF AR P++IFIDEID
Sbjct: 140 QSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEID-------SLLSQR 192
Query: 442 XNDERESTL---NQLLVEMDGFGTTA--GVVVIAGTNRPDILDKALLRPGRFDRQITIDK 496
+ E ES+ + LV++DG T++ ++V+ TNRP +D+A R R +++ I
Sbjct: 193 GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPL 250
Query: 497 PDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAAL 547
P+ R QI + K + Q + + F+GAD+ +C EA+L
Sbjct: 251 PEASARKQIVINLMSKEQCCLSEEEIEQ-IVQQSDAFSGADMTQLCREASL 300
>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain
pdb|2DI4|B Chain B, Crystal Structure Of The Ftsh Protease Domain
Length = 238
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 126/221 (57%), Gaps = 11/221 (4%)
Query: 580 ISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL-LLTKEQ 638
IS E+ +A HE+GHA+ G + + + K++I+PRG A LG Q +P E+ + K+
Sbjct: 11 ISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMA-LGVTQQLPIEDKHIYDKKD 69
Query: 639 LFDMTCMTLGGRAAEQVLLGK--ISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQR 696
L++ + LGGRAAE+V GK I+TGA+NDL++ T + Y V+++G SDKVG ++ +
Sbjct: 70 LYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRV 129
Query: 697 EDTF--EMSKPYSSKTGAI--IDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEV 752
+ F M+ + + ID EV+ + + Y + ++EE+KE + + + LLEKE
Sbjct: 130 ANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKET 189
Query: 753 LHQDDLLRVLGERPFKSSELTNYDRFKQGFEEEEKSSAPPE 793
+ ++ + V EL + + ++ F+++ KS E
Sbjct: 190 ITCEEFVEVF---KLYGIELKDKCKKEELFDKDRKSEENKE 227
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 497 PDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQ 556
PD++GR IF+++ K + ++ + + ++ L P GA++ +VC EA + A R
Sbjct: 8 PDLEGRANIFRIHSKSMSVERGIRW--ELISRLCPNSTGAELRSVCTEAGMFAIRARRKV 65
Query: 557 VTMEHFEAAIDRVIGGLEK 575
T + F A+D+VI G +K
Sbjct: 66 ATEKDFLKAVDKVISGYKK 84
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 498 DIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQV 557
D++GR IF+++ K ++ + + ++ L P GA++ +VC EA A R
Sbjct: 2 DLEGRANIFRIHSKSXSVERGIRW--ELISRLCPNSTGAELRSVCTEAGXFAIRARRKVA 59
Query: 558 TMEHFEAAIDRVIGGLEK 575
T + F A+D+VI G +K
Sbjct: 60 TEKDFLKAVDKVISGYKK 77
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 497 PDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQ 556
P+ + R I +++ +K+ L + +++A L PG +GA++ VC EA + A R
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINL--RKIAELMPGASGAEVKGVCTEAGMYALRERRVH 68
Query: 557 VTMEHFEAAIDRVI 570
VT E FE A+ +V+
Sbjct: 69 VTQEDFEMAVAKVM 82
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 345 LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM-FVGVG 403
L+ P ++E PK L++GP G GKT +A+ A + PF+ + + F E+ +VG
Sbjct: 40 LQEPLRHE----VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95
Query: 404 -PSRVRNLFQEARQCAPS-----IIFIDEID 428
S +R+L A + I+FIDEID
Sbjct: 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEID 126
>pdb|2LNA|A Chain A, Solution Nmr Structure Of The Mitochondrial Inner Membrane
Domain (Residues 164-251), Ftsh_ext, From The
Paraplegin-Like Protein Afg3l2 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr6741a
Length = 99
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 21/104 (20%)
Query: 158 REQQQISFQEFKNKLLEPGLVDHIVVSNKSVAKVFVRSSPHNQTIEDDFHGPVSGTPSKG 217
R ++I++++F N L G+VD + V NK FVR V+ TP K
Sbjct: 13 RSGREITWKDFVNNYLSKGVVDRLEVVNKR----FVR---------------VTFTPGKT 53
Query: 218 H-GGQYKYYFNIGSVXXXXXXXXXXXXTLGIDPHDFVPVTYVSE 260
GQY +FNIGSV LGI+ + VPV Y++E
Sbjct: 54 PVDGQY-VWFNIGSVDTFERNLETLQQELGIEGENRVPVVYIAE 96
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 497 PDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQ 556
P+ + R I +++ +K L +++A L PG +GA++ VC EA A R
Sbjct: 3 PNEEARLDILKIHSRKXNLTR--GINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVH 60
Query: 557 VTMEHFEAAIDRV 569
VT E FE A+ +V
Sbjct: 61 VTQEDFEXAVAKV 73
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 20/126 (15%)
Query: 314 KVDKNAKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLV--GPPGTG 371
K+D ++ + G ++ K+ I+E++ K + KG +L GPPG G
Sbjct: 69 KLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSL--------KGPILCLAGPPGVG 120
Query: 372 KTLLAKATAGESGVPFLSISGSDFME---------MFVGVGPSRVRNLFQEARQCAPSII 422
KT LAK+ A G F+ IS + +VG P R+ ++A + P +
Sbjct: 121 KTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VF 179
Query: 423 FIDEID 428
+DEID
Sbjct: 180 LLDEID 185
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 363 LLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSR-VRNLFQEARQCAPSI 421
LL GPP +GKT LA A ES PF+ I D M F + ++ +F +A + S
Sbjct: 67 LLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSC 126
Query: 422 IFIDEID 428
+ +D+I+
Sbjct: 127 VVVDDIE 133
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 363 LLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSR-VRNLFQEARQCAPSI 421
LL GPP +GKT LA A ES PF+ I D M F + ++ +F +A + S
Sbjct: 68 LLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSC 127
Query: 422 IFIDEID 428
+ +D+I+
Sbjct: 128 VVVDDIE 134
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 345 LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM-FVG 401
L+ P ++E PK L++GP G GKT +A+ A + PF+ + + F E+ +VG
Sbjct: 40 LQEPLRHE----VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM-FVG 401
PK L++GP G GKT +A+ A + PF+ + + F E+ +VG
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 92
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM-FVG 401
PK L++GP G GKT +A+ A + PF+ + + F E+ +VG
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 99
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCA 418
PK L++GP G GKT +A+ A + PF+ + + F E VG V ++ ++ A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAA 107
Query: 419 PSIIFIDEID 428
++ + I+
Sbjct: 108 VKMVRVQAIE 117
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 360 KGALLVGPPGTGKTLLAKATAGESG--VPFLSISGSDF 395
+ LL GPPGTGKT LA A A E G VPF + GS+
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Query: 363 LLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM-FVGVGPSRVRNLFQ--------E 413
LL+GP G+GKTLLA+ A VPF + E +VG V N+ Q +
Sbjct: 55 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVG---EDVENIIQKLLQKCDYD 111
Query: 414 ARQCAPSIIFIDEID 428
++ I++ID+ID
Sbjct: 112 VQKAQRGIVYIDQID 126
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Query: 363 LLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM-FVGVGPSRVRNLFQ--------E 413
LL+GP G+GKTLLA+ A VPF + E +VG V N+ Q +
Sbjct: 55 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVG---EDVENIIQKLLQKCDYD 111
Query: 414 ARQCAPSIIFIDEID 428
++ I++ID+ID
Sbjct: 112 VQKAQRGIVYIDQID 126
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 345 LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM-FVG 401
L+ P ++E PK L +GP G GKT +A+ A + PF+ + + F E+ +VG
Sbjct: 40 LQEPLRHE----VTPKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 363 LLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM-FVGVGPSRVRNLFQEA-----RQ 416
LL+GP G+GKTL+A+ A +P + E +VG + +A ++
Sbjct: 76 LLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQK 135
Query: 417 CAPSIIFIDEID 428
I+FIDEID
Sbjct: 136 AQKGIVFIDEID 147
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 360 KGALLVGPPGTGKTLLAKATAGESG--VPFLSISGSDF 395
+ LL GPPGTGKT LA A A E G VPF GS+
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEV 115
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 363 LLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQ----CA 418
+L GPPGTGKT LA+ A + IS V G +R + ARQ
Sbjct: 54 ILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAGR 106
Query: 419 PSIIFIDEI 427
+I+F+DE+
Sbjct: 107 RTILFVDEV 115
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 355 GAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSD 394
G+ + + A+L GPPG GKT A A E G L + SD
Sbjct: 73 GSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 349 RKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGE---SGVPFL----SISGSDFMEMFVG 401
R E L + +L+G PG GKT +A+ A + + VP + + D + G
Sbjct: 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRG 250
Query: 402 VGPSRVRNLFQEARQCAPSIIFID 425
R++ + E RQ I+FID
Sbjct: 251 EFEDRLKKVMDEIRQAGNIILFID 274
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 25/133 (18%)
Query: 307 IGKAHVTKVDK--NAKNKVYFRDVAGCDEAKQEIMEFVHF----LKNPRKYEDLGAKIPK 360
+ K T+ DK N +N ++ R V G DEA + + V LK+P++ P
Sbjct: 471 VSKIAQTETDKLLNMENILHSR-VIGQDEAVVAVAKAVRRARAGLKDPKR--------PI 521
Query: 361 GALL-VGPPGTGKTLLAKATA----GESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEAR 415
G+ + +GP G GKT LA+A A G+ + I S++ME G L ++ R
Sbjct: 522 GSFIFLGPTGVGKTELARALAESIFGDEE-SMIRIDMSEYMEKHSTSGG----QLTEKVR 576
Query: 416 QCAPSIIFIDEID 428
+ S++ +D I+
Sbjct: 577 RKPYSVVLLDAIE 589
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 349 RKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGE---SGVPFL----SISGSDFMEMFVG 401
R E L + +L+G PG GKT +A+ A + + VP + + D + G
Sbjct: 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRG 250
Query: 402 VGPSRVRNLFQEARQCAPSIIFID 425
R++ + E RQ I+FID
Sbjct: 251 EFEDRLKKVMDEIRQAGNIILFID 274
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 26/119 (21%)
Query: 328 VAGCDEAKQEIMEFVHF----LKNPRKYEDLGAKIPKGALL-VGPPGTGKTLLAK---AT 379
V G DEA + + + + LK+P + P G+ L +GP G GKT LAK AT
Sbjct: 560 VVGQDEAIRAVADAIRRARAGLKDPNR--------PIGSFLFLGPTGVGKTELAKTLAAT 611
Query: 380 AGESGVPFLSISGSDFME-----MFVGVGPSRV-----RNLFQEARQCAPSIIFIDEID 428
++ + I +++ME +G P V L + R+ S+I DEI+
Sbjct: 612 LFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIE 670
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 360 KGALLVGPPGTGKTLLAKATAGESG--VPFLSISGSDFMEM 398
+ L+ G PGTGKT +A A G PF +I+GS+ +
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSL 126
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 363 LLVGPPGTGKTLLAKATAGESGVPFLSI 390
LL G PG GKT L K A +SG+ ++++
Sbjct: 8 LLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 360 KGALLVGPPGTGKTLLAKATAGESG--VPFLSISGSDFMEM 398
+ L+ G PGTGKT +A A G PF +I+GS+ +
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 357 KIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEA-- 414
KIP L PGTGKT +AKA + + ++GSD FV GP + N A
Sbjct: 46 KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVR-GP--LTNFASAASF 102
Query: 415 --RQCAPSIIFIDEID 428
RQ +I IDE D
Sbjct: 103 DGRQ---KVIVIDEFD 115
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 363 LLVGPPGTGKTLLAKATAGESGVPFLSI 390
LL G PG GKT L K A +SG+ ++++
Sbjct: 15 LLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 363 LLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSII 422
LL GPPG GKT LA A E GV SG + G + + N +E I+
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--PGDLAAILANSLEEG-----DIL 94
Query: 423 FIDEI 427
FIDEI
Sbjct: 95 FIDEI 99
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 363 LLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSII 422
LL GPPG GKT LA A E GV SG + G + + N +E I+
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--PGDLAAILANSLEEG-----DIL 94
Query: 423 FIDEI 427
FIDEI
Sbjct: 95 FIDEI 99
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 363 LLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSII 422
LL GPPG GKT LA A E GV SG + G + + N +E I+
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--PGDLAAILANSLEEG-----DIL 94
Query: 423 FIDEI 427
FIDEI
Sbjct: 95 FIDEI 99
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 50/113 (44%), Gaps = 29/113 (25%)
Query: 327 DVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATA----GE 382
+V G DE Q + +V RK IP L GPPGTGKT A A A GE
Sbjct: 18 EVVGQDEVIQRLKGYVE-----RK------NIPH-LLFSGPPGTGKTATAIALARDLFGE 65
Query: 383 SGVP-FLSISGSDFMEMFVGVGPSRVRNLFQEARQCAP------SIIFIDEID 428
+ F+ ++ SD G VR+ +E + AP IIF+DE D
Sbjct: 66 NWRDNFIEMNASD------ERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEAD 112
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 498 DIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQV 557
D + + IF K+ L E + A +GADI ++C E+ ++A R V
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDL--EDYVARPDKISGADINSICQESGMLAVRENRYIV 59
Query: 558 TMEHFEAAIDRVIGGLEKKNK 578
+ FE A VI E++++
Sbjct: 60 LAKDFEKAYKTVIKKDEQEHE 80
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 19/78 (24%)
Query: 363 LLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSR------VRNLFQEARQ 416
L GPPGTGKT A A A + + G ++ + F+ + S VR+ +E +
Sbjct: 42 LFSGPPGTGKTATAIALARD-------LFGENWRDNFIEMNASDERGIDVVRHKIKEFAR 94
Query: 417 CAP------SIIFIDEID 428
AP IIF+DE D
Sbjct: 95 TAPIGGAPFKIIFLDEAD 112
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate Kinase
From Agrobacterium Tumefaciens, Northeast Structural
Genomics Target Atr62
Length = 191
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 352 EDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDF 395
+DLG I LL G PG+GK+ +A+A A GVP + D
Sbjct: 5 DDLGGNI---LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 19/97 (19%)
Query: 343 HFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATA----GESGV-PFLSISGSDFME 397
H +K + Y G+ +P L GPPG GKT A A A GE+ FL ++ SD
Sbjct: 32 HIVKRLKHYVKTGS-MPH-LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD--- 86
Query: 398 MFVGVGPSRVRNLFQEARQCAP------SIIFIDEID 428
G + +R +E + P IIF+DE D
Sbjct: 87 ---ERGINVIREKVKEFARTKPIGGASFKIIFLDEAD 120
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 363 LLVGPPGTGKTLLAKATAG---ESGVPFL----SISGSDFMEMFVGVG-----PSRVRNL 410
LLVG G GKT +A+ A + VP + +I D + G R + L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 411 FQEARQCAPSIIFIDEI 427
++ Q SI+FIDEI
Sbjct: 271 LKQLEQDTNSILFIDEI 287
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 15/112 (13%)
Query: 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGAL---LVGPPGTGKTLLAKATAG- 381
R++ G K I E L R + LG L G PGTGKT +A AG
Sbjct: 31 RELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHXSFTGNPGTGKTTVALKXAGL 90
Query: 382 -------ESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDE 426
G +S++ D + ++G + + + + A ++FIDE
Sbjct: 91 LHRLGYVRKG-HLVSVTRDDLVGQYIGHTAPKTKEVLKRA---XGGVLFIDE 138
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 15/112 (13%)
Query: 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGAL---LVGPPGTGKTLLAKATAG- 381
R++ G K I E L R + LG L G PGTGKT +A AG
Sbjct: 24 RELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 83
Query: 382 -------ESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDE 426
G +S++ D + ++G + + + + A ++FIDE
Sbjct: 84 LHRLGYVRKG-HLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDE 131
>pdb|2AHJ|B Chain B, Nitrile Hydratase Complexed With Nitric Oxide
pdb|2AHJ|D Chain D, Nitrile Hydratase Complexed With Nitric Oxide
pdb|2CYZ|B Chain B, Photo-Activation State Of Fe-Type Nhase In Anaerobic
Condition
pdb|2CZ0|B Chain B, Photo-Activation State Of Fe-Type Nhase In Aerobic
Condition
pdb|2CZ1|B Chain B, Photo-Activation State Of Fe-Type Nhase With N-Ba In
Anaerobic Condition
pdb|2CZ6|B Chain B, Complex Of Inactive Fe-Type Nhase With Cyclohexyl
Isocyanide
pdb|2CZ7|B Chain B, Fe-Type Nhase Photo-Activated For 75min At 105k
pdb|2D0Q|B Chain B, Complex Of Fe-Type Nhase With Cyclohexyl Isocyanide,
Photo- Activated For 1hr At 277k
pdb|2ZCF|B Chain B, Mutational Study On Alpha-Gln90 Of Fe-Type Nitrile
Hydratase From Rhodococcus Sp. N771
pdb|2QDY|B Chain B, Crystal Structure Of Fe-Type Nhase From Rhodococcus
Erythropolis Aj270
pdb|2ZPB|B Chain B, Nitrosylated Fe-Type Nitrile Hydratase
pdb|2ZPE|B Chain B, Nitrosylated Fe-Type Nitrile Hydratase With Tert-
Butylisonitrile
pdb|2ZPF|B Chain B, Complex Of Fe-Type Nitrile Hydratase With Tert-
Butylisonitrile, Photo-Activated For 18min At 293k
pdb|2ZPG|B Chain B, Complex Of Fe-Type Nitrile Hydratase With Tert-
Butylisonitrile, Photo-Activated For 120min At 293k
pdb|2ZPH|B Chain B, Complex Of Fe-Type Nitrile Hydratase With Tert-
Butylisonitrile, Photo-Activated For 340min At 293k
pdb|2ZPI|B Chain B, Complex Of Fe-Type Nitrile Hydratase With Tert-
Butylisonitrile, Photo-Activated For 440min At 293k
pdb|3A8G|B Chain B, Crystal Structure Of Nitrile Hydratase Mutant S113a
Complexed With Trimethylacetonitrile
pdb|3A8H|B Chain B, Crystal Structure Of Nitrile Hydratase Mutant S113a
Complexed With Trimethylacetamide
pdb|3A8L|B Chain B, Crystal Structure Of Photo-Activation State Of Nitrile
Hydratase Mutant S113a
pdb|3A8O|B Chain B, Crystal Structure Of Nitrile Hydratase Complexed With
Trimethylacetamide
Length = 212
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 705 PYS------SKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDL 758
PYS ++ GA EVR V + R + ++ +V +A L++EK +L QD+L
Sbjct: 36 PYSLMFAGVAELGAFSVDEVRYVVERMEPRHYMMTPYYERYVIGVATLMVEKGILTQDEL 95
Query: 759 LRVLGERPFKSSELTNYDRFKQGFEEEEKSSAPPETGTVDDG 800
+ G PF S + E E AP ET T + G
Sbjct: 96 ESLAG-GPFPLSRPS----------ESEGRPAPVETTTFEVG 126
>pdb|1AHJ|B Chain B, Nitrile Hydratase
pdb|1AHJ|D Chain D, Nitrile Hydratase
pdb|1AHJ|F Chain F, Nitrile Hydratase
pdb|1AHJ|H Chain H, Nitrile Hydratase
Length = 212
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 705 PYS------SKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDL 758
PYS ++ GA EVR V + R + ++ +V +A L++EK +L QD+L
Sbjct: 36 PYSLMFAGVAELGAFSVDEVRYVVERMEPRHYMMTPYYERYVIGVATLMVEKGILTQDEL 95
Query: 759 LRVLGERPFKSSELTNYDRFKQGFEEEEKSSAPPETGTVDDG 800
+ G PF S + E E AP ET T + G
Sbjct: 96 ESLAG-GPFPLSRPS----------ESEGRPAPVETTTFEVG 126
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 15/112 (13%)
Query: 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGAL---LVGPPGTGKTLLAKATAG- 381
R++ G K I E L R + LG L G PGTGKT +A AG
Sbjct: 31 RELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90
Query: 382 -------ESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDE 426
G +S++ D + ++G + + + + A ++FIDE
Sbjct: 91 LHRLGYVRKG-HLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDE 138
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 26/119 (21%)
Query: 328 VAGCDEAKQEIMEFVHF----LKNPRKYEDLGAKIPKGALL-VGPPGTGKTLLAK---AT 379
V G DEA + + + + LK+P + P G+ L +GP G GKT LAK AT
Sbjct: 16 VVGQDEAIRAVADAIRRARAGLKDPNR--------PIGSFLFLGPTGVGKTELAKTLAAT 67
Query: 380 AGESGVPFLSISGSDFME-----MFVGVGPSRV-----RNLFQEARQCAPSIIFIDEID 428
++ + I +++ME +G P V L + R+ S+I D I+
Sbjct: 68 LFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIE 126
>pdb|3A8M|B Chain B, Crystal Structure Of Nitrile Hydratase Mutant Y72f
Complexed With Trimethylacetonitrile
Length = 212
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 705 PYS------SKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDL 758
PYS ++ GA EVR V + R + ++ +V +A L++EK +L QD+L
Sbjct: 36 PYSLMFAGVAELGAFSVDEVRYVVERMEPRHYMMTPFYERYVIGVATLMVEKGILTQDEL 95
Query: 759 LRVLGERPFKSSELTNYDRFKQGFEEEEKSSAPPETGTVDDG 800
+ G PF S + E E AP ET T + G
Sbjct: 96 ESLAG-GPFPLSRPS----------ESEGRPAPVETTTFEVG 126
>pdb|1E29|A Chain A, Psii Associated Cytochrome C549 From Synechocystis Sp
Length = 135
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 314 KVDKNAKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYE 352
K N + D+AG + + ++ V FLKNP+ Y+
Sbjct: 45 KTKTNNNVSLGLADLAGAEPRRDNVLALVEFLKNPKSYD 83
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 21/92 (22%)
Query: 349 RKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVR 408
RK+ D G K+P L GPPGTGKT A A E I G ++ M + + S R
Sbjct: 38 RKFVDEG-KLPH-LLFYGPPGTGKTSTIVALARE-------IYGKNYSNMVLELNASDDR 88
Query: 409 NL---------FQEARQCAP---SIIFIDEID 428
+ F RQ +I +DE D
Sbjct: 89 GIDVVRNQIKDFASTRQIFSKGFKLIILDEAD 120
>pdb|1BLP|A Chain A, Structural Basis For The Inactivation Of The P54 Mutant Of
Beta- Lactamase From Staphylococcus Aureus Pc1
Length = 257
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 310 AHVTKVDKNAKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYE-DLGAKIPKGALLVGPP 368
A +T D A NK+ +++ G + KQ + E + NP +YE +L PK P
Sbjct: 92 ASMTYSDNTANNKI-IKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKNTSTP 150
Query: 369 GT-GKTL 374
GKTL
Sbjct: 151 AAFGKTL 157
>pdb|1PIO|A Chain A, An Engineered Staphylococcus Aureus Pc1 Beta-Lactamase
That Hydrolyses Third Generation Cephalosporins
pdb|1PIO|B Chain B, An Engineered Staphylococcus Aureus Pc1 Beta-Lactamase
That Hydrolyses Third Generation Cephalosporins
Length = 257
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 310 AHVTKVDKNAKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYE-DLGAKIPKGALLVGPP 368
A +T D A NK+ +++ G + KQ + E + NP +YE +L PK P
Sbjct: 93 ASMTYSDNTANNKI-IKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTP 151
Query: 369 GT-GKTL 374
GKTL
Sbjct: 152 AAFGKTL 158
>pdb|1DJA|A Chain A, Structure Of Beta-Lactamase Precursor, K73h Mutant, At
298k
Length = 258
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 310 AHVTKVDKNAKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYE-DLGAKIPKGALLVGPP 368
A +T D A NK+ +++ G + KQ + E + NP +YE +L PK P
Sbjct: 93 ASMTYSDNTANNKI-IKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTP 151
Query: 369 GT-GKTL 374
GKTL
Sbjct: 152 AAFGKTL 158
>pdb|1ALQ|A Chain A, Circularly Permuted Beta-Lactamase From Staphylococcus
Aureus Pc1
Length = 266
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 310 AHVTKVDKNAKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYE-DLGAKIPKGALLVGPP 368
A +T D A NK+ +++ G + KQ + E + NP +YE +L PK P
Sbjct: 138 ASMTYSDNTANNKI-IKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTP 196
Query: 369 GT-GKTL 374
GKTL
Sbjct: 197 AAFGKTL 203
>pdb|1BLC|A Chain A, Inhibition Of Beta-Lactamase By Clavulanate: Trapped
Intermediates In Cryocrystallographic Studies
pdb|1BLH|A Chain A, Structure Of A Phosphonate-Inhibited Beta-Lactamase. An
Analog Of The Tetrahedral Transition State(Slash)
Intermediate Of Beta-Lactam Hydrolysis
pdb|3BLM|A Chain A, Refined Crystal Structure Of Beta-Lactamase From
Staphylococcus Aureus Pc1 At 2.0
Length = 257
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 310 AHVTKVDKNAKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYE-DLGAKIPKGALLVGPP 368
A +T D A NK+ +++ G + KQ + E + NP +YE +L PK P
Sbjct: 92 ASMTYSDNTANNKI-IKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTP 150
Query: 369 GT-GKTL 374
GKTL
Sbjct: 151 AAFGKTL 157
>pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163-178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
pdb|1OME|B Chain B, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163-178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
Length = 258
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 310 AHVTKVDKNAKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYE-DLGAKIPKGALLVGPP 368
A +T D A NK+ +++ G + KQ + E + NP +YE +L PK P
Sbjct: 93 ASMTYSDNTANNKI-IKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTP 151
Query: 369 GT-GKTL 374
GKTL
Sbjct: 152 AAFGKTL 158
>pdb|1DJB|A Chain A, Structure Of Beta-Lactamase Precursor, S70a Mutant, At
298k
pdb|1DJC|A Chain A, Structure Of Beta-Lactamase Precursor, S70a Mutant, At
120k
Length = 257
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 310 AHVTKVDKNAKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYE-DLGAKIPKGALLVGPP 368
A +T D A NK+ +++ G + KQ + E + NP +YE +L PK P
Sbjct: 92 ASMTYSDNTANNKI-IKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTP 150
Query: 369 GT-GKTL 374
GKTL
Sbjct: 151 AAFGKTL 157
>pdb|2F96|A Chain A, 2.1 A Crystal Structure Of Pseudomonas Aeruginosa Rnase T
(Ribonuclease T)
pdb|2F96|B Chain B, 2.1 A Crystal Structure Of Pseudomonas Aeruginosa Rnase T
(Ribonuclease T)
Length = 224
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 513 IKLDHEPSYYSQRLAALTPGFAG---ADIANVCNEAALIAARGENSQVTMEHFEAAIDRV 569
IKLDH Q AALT F G A AN C A L+ G NS + AA+ R
Sbjct: 92 IKLDHPLRXAVQEEAALTEIFRGIRKALKANGCKRAILV---GHNSSFDLGFLNAAVART 148
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 358 IPKGA----LLVGPPGTGKTLLAKATAGESGVPFLS 389
+P+G+ LL+GPPG GK A A + G+P +S
Sbjct: 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,602,788
Number of Sequences: 62578
Number of extensions: 806704
Number of successful extensions: 2292
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2119
Number of HSP's gapped (non-prelim): 106
length of query: 811
length of database: 14,973,337
effective HSP length: 107
effective length of query: 704
effective length of database: 8,277,491
effective search space: 5827353664
effective search space used: 5827353664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)