Query 047690
Match_columns 811
No_of_seqs 644 out of 4022
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 13:41:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0731 AAA+-type ATPase conta 100.0 3E-121 7E-126 1058.0 56.9 604 160-785 163-769 (774)
2 COG0465 HflB ATP-dependent Zn 100.0 3E-112 7E-117 970.1 53.2 566 160-768 22-594 (596)
3 KOG0734 AAA+-type ATPase conta 100.0 2E-108 3E-113 901.8 41.6 442 313-765 291-735 (752)
4 CHL00176 ftsH cell division pr 100.0 5.2E-94 1.1E-98 840.7 59.8 567 160-766 49-627 (638)
5 PRK10733 hflB ATP-dependent me 100.0 2.2E-91 4.7E-96 825.3 62.3 560 159-768 28-599 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 6E-86 1.3E-90 760.2 52.0 486 263-763 2-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 1.4E-57 3E-62 485.5 26.2 253 318-573 143-396 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 7.3E-57 1.6E-61 549.8 28.3 316 351-693 1622-1995(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 9.9E-50 2.2E-54 451.0 23.9 246 319-570 427-675 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 4.2E-48 9E-53 431.6 23.9 249 319-573 504-773 (802)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 3.4E-45 7.5E-50 408.4 21.6 228 319-552 183-414 (802)
12 KOG0729 26S proteasome regulat 100.0 4.2E-45 9.1E-50 375.0 17.7 256 318-576 169-425 (435)
13 KOG0727 26S proteasome regulat 100.0 5E-44 1.1E-48 364.9 23.2 256 312-570 141-397 (408)
14 KOG0728 26S proteasome regulat 100.0 5.3E-44 1.2E-48 364.4 21.1 248 321-571 142-390 (404)
15 KOG0652 26S proteasome regulat 100.0 3.6E-44 7.9E-49 367.3 19.7 249 319-570 164-413 (424)
16 KOG0726 26S proteasome regulat 100.0 1E-44 2.2E-49 376.1 15.5 251 319-572 178-429 (440)
17 KOG0736 Peroxisome assembly fa 100.0 1E-43 2.2E-48 404.8 23.8 248 319-571 665-934 (953)
18 COG1223 Predicted ATPase (AAA+ 100.0 1.2E-43 2.6E-48 363.8 20.1 240 319-568 114-354 (368)
19 PF01434 Peptidase_M41: Peptid 100.0 4.8E-44 1E-48 369.8 17.0 203 558-761 1-213 (213)
20 KOG0738 AAA+-type ATPase [Post 100.0 2.5E-42 5.3E-47 370.3 21.5 245 319-571 205-471 (491)
21 PTZ00454 26S protease regulato 100.0 3.4E-41 7.4E-46 377.5 27.9 251 319-572 138-389 (398)
22 PRK03992 proteasome-activating 100.0 9E-40 1.9E-44 366.3 27.5 253 319-574 124-377 (389)
23 PTZ00361 26 proteosome regulat 100.0 1.9E-39 4E-44 366.1 24.7 250 319-571 176-426 (438)
24 COG0464 SpoVK ATPases of the A 100.0 6.9E-39 1.5E-43 369.6 24.7 247 319-569 235-483 (494)
25 KOG0735 AAA+-type ATPase [Post 100.0 5.6E-39 1.2E-43 363.1 22.0 229 318-552 659-888 (952)
26 TIGR01243 CDC48 AAA family ATP 100.0 2.3E-38 5E-43 380.8 25.9 248 320-572 447-713 (733)
27 CHL00195 ycf46 Ycf46; Provisio 100.0 4.2E-38 9.1E-43 359.7 26.4 244 320-571 222-465 (489)
28 KOG0739 AAA+-type ATPase [Post 100.0 9.4E-39 2E-43 332.7 12.9 226 319-552 126-353 (439)
29 KOG0737 AAA+-type ATPase [Post 100.0 1.1E-37 2.3E-42 335.1 20.6 226 319-552 85-314 (386)
30 TIGR01242 26Sp45 26S proteasom 100.0 5.8E-37 1.3E-41 340.9 26.1 248 319-569 115-363 (364)
31 KOG0651 26S proteasome regulat 100.0 3.4E-38 7.4E-43 330.8 13.0 246 321-569 127-373 (388)
32 KOG0730 AAA+-type ATPase [Post 100.0 3.9E-36 8.5E-41 340.8 19.1 287 321-629 180-477 (693)
33 TIGR03689 pup_AAA proteasome A 100.0 1.6E-34 3.4E-39 330.3 25.8 251 319-572 175-481 (512)
34 TIGR01243 CDC48 AAA family ATP 100.0 1.6E-32 3.5E-37 330.3 24.8 246 320-571 172-437 (733)
35 KOG0732 AAA+-type ATPase conta 100.0 9.5E-33 2.1E-37 328.6 18.7 249 320-573 259-529 (1080)
36 PLN00020 ribulose bisphosphate 100.0 2.6E-31 5.7E-36 288.6 23.3 219 321-549 110-351 (413)
37 KOG0741 AAA+-type ATPase [Post 100.0 7.3E-32 1.6E-36 297.8 17.8 248 320-571 213-492 (744)
38 KOG0740 AAA+-type ATPase [Post 100.0 1.5E-30 3.2E-35 288.8 17.8 243 320-570 147-405 (428)
39 CHL00181 cbbX CbbX; Provisiona 99.9 2.3E-21 5.1E-26 209.4 21.6 214 325-551 22-256 (287)
40 TIGR02880 cbbX_cfxQ probable R 99.9 8.1E-21 1.8E-25 205.0 20.6 211 327-551 23-255 (284)
41 TIGR02881 spore_V_K stage V sp 99.9 1.4E-20 2.9E-25 200.6 22.0 213 324-551 4-240 (261)
42 KOG0742 AAA+-type ATPase [Post 99.9 1.3E-20 2.8E-25 204.0 19.8 235 321-567 350-610 (630)
43 PF00004 AAA: ATPase family as 99.9 5.4E-21 1.2E-25 179.9 13.7 130 362-496 1-132 (132)
44 KOG0743 AAA+-type ATPase [Post 99.8 1E-20 2.2E-25 209.3 16.5 208 322-541 197-412 (457)
45 KOG0736 Peroxisome assembly fa 99.8 1E-19 2.2E-24 209.4 18.6 267 327-608 402-698 (953)
46 KOG0744 AAA+-type ATPase [Post 99.8 3.2E-19 7E-24 189.2 15.9 241 324-568 140-413 (423)
47 COG0464 SpoVK ATPases of the A 99.8 1.4E-18 3E-23 201.2 19.8 262 345-615 4-275 (494)
48 TIGR00635 ruvB Holliday juncti 99.8 5.8E-18 1.3E-22 183.6 20.9 211 324-568 2-228 (305)
49 KOG0735 AAA+-type ATPase [Post 99.8 3.5E-18 7.7E-23 195.2 19.3 233 326-571 408-650 (952)
50 PRK00080 ruvB Holliday junctio 99.8 9.3E-18 2E-22 184.6 21.6 217 322-569 21-250 (328)
51 TIGR02639 ClpA ATP-dependent C 99.8 1.4E-17 3.1E-22 201.0 22.5 225 322-571 178-431 (731)
52 PF05496 RuvB_N: Holliday junc 99.8 8.9E-18 1.9E-22 173.2 16.7 190 322-545 20-225 (233)
53 TIGR02902 spore_lonB ATP-depen 99.8 3E-17 6.5E-22 191.3 20.2 214 321-567 60-330 (531)
54 PRK11034 clpA ATP-dependent Cl 99.7 1.4E-16 2.9E-21 191.4 23.6 226 322-572 182-436 (758)
55 TIGR00763 lon ATP-dependent pr 99.7 9.1E-17 2E-21 195.1 18.1 164 326-510 320-505 (775)
56 COG2255 RuvB Holliday junction 99.7 3.2E-16 7E-21 164.7 18.8 214 322-569 22-251 (332)
57 COG2256 MGS1 ATPase related to 99.7 2.3E-16 5E-21 172.5 17.4 205 322-569 20-238 (436)
58 PRK04195 replication factor C 99.7 4.5E-15 9.7E-20 171.6 29.1 206 322-566 10-222 (482)
59 PRK14962 DNA polymerase III su 99.7 1.2E-15 2.6E-20 175.1 22.0 203 322-567 10-240 (472)
60 PRK14956 DNA polymerase III su 99.7 1.1E-15 2.3E-20 173.9 21.0 208 322-566 14-243 (484)
61 PRK12323 DNA polymerase III su 99.7 1.2E-15 2.6E-20 177.4 18.7 207 322-565 12-245 (700)
62 TIGR00362 DnaA chromosomal rep 99.7 2.4E-15 5.3E-20 170.0 20.8 241 320-601 104-358 (405)
63 PRK07003 DNA polymerase III su 99.7 2.8E-15 6.1E-20 176.3 20.9 207 322-565 12-240 (830)
64 PRK00149 dnaA chromosomal repl 99.7 2.5E-15 5.4E-20 172.2 20.2 222 320-570 116-350 (450)
65 TIGR02928 orc1/cdc6 family rep 99.7 4.4E-15 9.6E-20 164.8 21.1 225 322-569 11-274 (365)
66 PRK14961 DNA polymerase III su 99.7 5.9E-15 1.3E-19 164.8 21.6 208 322-566 12-241 (363)
67 PRK06645 DNA polymerase III su 99.7 5.2E-15 1.1E-19 170.8 21.5 211 322-566 17-253 (507)
68 TIGR03345 VI_ClpV1 type VI sec 99.7 2.9E-15 6.2E-20 182.9 20.2 219 322-566 183-428 (852)
69 PRK14960 DNA polymerase III su 99.6 5.2E-15 1.1E-19 172.5 20.6 202 322-566 11-240 (702)
70 PRK07994 DNA polymerase III su 99.6 1.1E-14 2.4E-19 171.6 21.3 202 322-566 12-241 (647)
71 PRK14958 DNA polymerase III su 99.6 8.4E-15 1.8E-19 169.8 20.1 202 322-566 12-241 (509)
72 PRK13342 recombination factor 99.6 1.8E-14 3.9E-19 163.5 21.6 200 322-569 8-219 (413)
73 PRK14964 DNA polymerase III su 99.6 1.5E-14 3.2E-19 166.1 20.8 202 322-566 9-238 (491)
74 PRK14088 dnaA chromosomal repl 99.6 1.2E-14 2.6E-19 166.0 20.1 221 320-570 99-333 (440)
75 PRK08691 DNA polymerase III su 99.6 9.2E-15 2E-19 171.8 19.5 209 322-567 12-242 (709)
76 PRK14949 DNA polymerase III su 99.6 1.5E-14 3.3E-19 173.0 21.2 192 322-546 12-225 (944)
77 TIGR03420 DnaA_homol_Hda DnaA 99.6 4.1E-14 8.9E-19 146.5 21.6 207 320-566 9-225 (226)
78 PRK00411 cdc6 cell division co 99.6 4E-14 8.6E-19 158.9 23.1 226 322-569 26-282 (394)
79 PRK14963 DNA polymerase III su 99.6 2.3E-14 5.1E-19 165.8 21.4 201 322-566 10-237 (504)
80 PRK12402 replication factor C 99.6 3.4E-14 7.3E-19 155.7 21.6 207 322-567 11-247 (337)
81 PRK06893 DNA replication initi 99.6 4.1E-14 9E-19 148.3 21.2 212 320-566 10-227 (229)
82 COG0466 Lon ATP-dependent Lon 99.6 4.6E-15 1E-19 171.5 14.5 235 321-567 318-582 (782)
83 PRK10865 protein disaggregatio 99.6 1.2E-14 2.6E-19 177.9 18.7 169 322-516 174-360 (857)
84 PRK05563 DNA polymerase III su 99.6 3.7E-14 7.9E-19 166.4 21.6 202 322-566 12-241 (559)
85 TIGR02397 dnaX_nterm DNA polym 99.6 4.1E-14 8.9E-19 156.4 20.8 204 321-567 9-240 (355)
86 CHL00095 clpC Clp protease ATP 99.6 2E-14 4.3E-19 175.8 19.8 186 322-534 175-381 (821)
87 PRK14951 DNA polymerase III su 99.6 3.3E-14 7.1E-19 167.2 20.8 208 322-566 12-246 (618)
88 PLN03025 replication factor C 99.6 4.3E-14 9.3E-19 155.1 19.6 199 322-565 9-219 (319)
89 PRK08903 DnaA regulatory inact 99.6 1.3E-13 2.8E-18 143.7 21.6 203 320-567 12-224 (227)
90 PRK14969 DNA polymerase III su 99.6 4.3E-14 9.4E-19 164.7 19.8 209 322-567 12-242 (527)
91 PHA02544 44 clamp loader, smal 99.6 5.9E-14 1.3E-18 153.1 19.5 202 322-564 17-226 (316)
92 TIGR03346 chaperone_ClpB ATP-d 99.6 3.3E-14 7.2E-19 174.4 19.1 202 322-549 169-396 (852)
93 PRK14086 dnaA chromosomal repl 99.6 8.8E-14 1.9E-18 162.2 20.4 223 320-571 282-517 (617)
94 PRK14957 DNA polymerase III su 99.6 9.8E-14 2.1E-18 161.3 20.4 202 322-566 12-241 (546)
95 KOG2004 Mitochondrial ATP-depe 99.6 1.4E-14 3.1E-19 166.4 12.5 186 306-511 391-597 (906)
96 PRK14959 DNA polymerase III su 99.6 9.4E-14 2E-18 162.6 19.5 202 322-566 12-241 (624)
97 PRK07133 DNA polymerase III su 99.6 1.5E-13 3.2E-18 163.0 21.2 209 321-566 13-240 (725)
98 PRK14952 DNA polymerase III su 99.6 1.3E-13 2.7E-18 161.7 20.3 209 322-566 9-241 (584)
99 PRK05342 clpX ATP-dependent pr 99.6 1.2E-13 2.5E-18 156.3 19.3 182 323-508 67-323 (412)
100 PRK14970 DNA polymerase III su 99.6 1.5E-13 3.3E-18 153.4 20.0 209 322-567 13-231 (367)
101 PRK08084 DNA replication initi 99.6 4.6E-13 1E-17 140.9 22.3 207 320-566 16-233 (235)
102 PRK07764 DNA polymerase III su 99.5 1E-13 2.2E-18 168.1 19.3 208 322-565 11-242 (824)
103 PRK14965 DNA polymerase III su 99.5 1.4E-13 3.1E-18 162.0 19.9 201 322-565 12-240 (576)
104 PRK13341 recombination factor 99.5 1.3E-13 2.9E-18 165.2 19.9 208 322-569 24-247 (725)
105 PRK14953 DNA polymerase III su 99.5 2.4E-13 5.3E-18 156.9 21.4 208 322-566 12-241 (486)
106 PRK07940 DNA polymerase III su 99.5 1.2E-13 2.6E-18 155.5 18.4 187 324-543 3-216 (394)
107 PRK12422 chromosomal replicati 99.5 2.7E-13 5.8E-18 155.0 21.1 228 320-571 105-345 (445)
108 PRK05896 DNA polymerase III su 99.5 2.2E-13 4.9E-18 158.7 20.2 208 322-566 12-241 (605)
109 PRK10787 DNA-binding ATP-depen 99.5 9.4E-14 2E-18 168.1 17.6 164 326-511 322-507 (784)
110 PTZ00112 origin recognition co 99.5 2.9E-13 6.3E-18 159.9 20.8 216 326-570 755-1007(1164)
111 PRK06647 DNA polymerase III su 99.5 3E-13 6.5E-18 158.5 20.8 208 322-566 12-241 (563)
112 PRK09111 DNA polymerase III su 99.5 4.2E-13 9.1E-18 158.0 21.2 208 322-566 20-254 (598)
113 PRK08451 DNA polymerase III su 99.5 4.9E-13 1.1E-17 154.9 21.0 202 322-566 10-239 (535)
114 KOG2028 ATPase related to the 99.5 2E-13 4.4E-18 147.1 16.3 209 322-568 134-367 (554)
115 PRK06305 DNA polymerase III su 99.5 4.9E-13 1.1E-17 153.3 20.6 208 322-566 13-243 (451)
116 PRK14955 DNA polymerase III su 99.5 3.3E-13 7.1E-18 152.5 18.3 213 321-566 11-254 (397)
117 TIGR00390 hslU ATP-dependent p 99.5 4E-13 8.7E-18 150.1 17.7 175 327-506 13-342 (441)
118 PRK08727 hypothetical protein; 99.5 2.4E-12 5.2E-17 135.3 22.6 209 320-568 13-230 (233)
119 PRK14087 dnaA chromosomal repl 99.5 8.7E-13 1.9E-17 151.2 20.1 220 322-569 111-348 (450)
120 TIGR02903 spore_lon_C ATP-depe 99.5 2E-12 4.4E-17 153.4 23.7 217 322-568 150-429 (615)
121 PRK05642 DNA replication initi 99.5 3.3E-12 7E-17 134.5 21.8 212 319-566 12-232 (234)
122 PRK14948 DNA polymerase III su 99.5 1.7E-12 3.6E-17 153.8 21.3 206 322-565 12-241 (620)
123 PRK14950 DNA polymerase III su 99.5 1.6E-12 3.5E-17 153.6 20.8 208 322-566 12-242 (585)
124 PRK14954 DNA polymerase III su 99.5 1.8E-12 3.9E-17 153.0 20.7 212 322-566 12-254 (620)
125 PRK00440 rfc replication facto 99.5 2.7E-12 5.8E-17 139.5 20.5 201 322-567 13-224 (319)
126 TIGR00382 clpX endopeptidase C 99.5 1.2E-12 2.7E-17 147.6 17.6 180 327-509 78-330 (413)
127 PRK05201 hslU ATP-dependent pr 99.5 3E-13 6.5E-18 151.2 12.1 176 327-507 16-345 (443)
128 COG2812 DnaX DNA polymerase II 99.5 9.8E-13 2.1E-17 151.0 16.6 208 322-566 12-241 (515)
129 PRK13407 bchI magnesium chelat 99.4 1.4E-12 3.1E-17 143.7 16.8 220 321-570 3-307 (334)
130 KOG0989 Replication factor C, 99.4 1.7E-12 3.6E-17 138.2 16.5 182 322-543 32-229 (346)
131 TIGR02640 gas_vesic_GvpN gas v 99.4 3.7E-12 8.1E-17 136.2 19.1 191 359-571 21-259 (262)
132 PF00308 Bac_DnaA: Bacterial d 99.4 2.2E-12 4.8E-17 134.5 16.6 200 321-549 3-216 (219)
133 PRK06620 hypothetical protein; 99.4 4.3E-12 9.3E-17 131.9 18.0 196 319-566 9-213 (214)
134 CHL00081 chlI Mg-protoporyphyr 99.4 3.3E-12 7.2E-17 141.3 17.2 223 320-571 11-324 (350)
135 COG1224 TIP49 DNA helicase TIP 99.4 4.3E-12 9.3E-17 137.1 17.1 99 467-569 322-432 (450)
136 COG1474 CDC6 Cdc6-related prot 99.4 1.4E-11 3E-16 137.7 21.5 218 327-569 18-265 (366)
137 TIGR02639 ClpA ATP-dependent C 99.4 5E-12 1.1E-16 153.2 18.9 163 326-512 454-664 (731)
138 TIGR02030 BchI-ChlI magnesium 99.4 4.6E-12 1E-16 139.9 16.4 219 324-571 2-311 (337)
139 PRK14971 DNA polymerase III su 99.4 1.3E-11 2.7E-16 146.4 20.9 208 322-566 13-243 (614)
140 PRK11034 clpA ATP-dependent Cl 99.4 2.9E-12 6.3E-17 154.4 15.8 165 327-512 459-668 (758)
141 PF05673 DUF815: Protein of un 99.4 9.6E-12 2.1E-16 130.3 16.9 194 320-544 21-244 (249)
142 COG0593 DnaA ATPase involved i 99.4 2.8E-11 6E-16 135.6 20.4 228 320-574 81-318 (408)
143 COG3829 RocR Transcriptional r 99.3 7.4E-12 1.6E-16 142.2 13.3 217 321-567 240-496 (560)
144 TIGR02442 Cob-chelat-sub cobal 99.3 1.3E-11 2.9E-16 147.1 16.0 216 324-570 2-305 (633)
145 PRK09087 hypothetical protein; 99.3 5.5E-11 1.2E-15 124.7 17.2 172 361-569 46-222 (226)
146 cd00009 AAA The AAA+ (ATPases 99.3 3.3E-11 7.2E-16 113.1 13.9 123 359-495 19-150 (151)
147 TIGR01650 PD_CobS cobaltochela 99.3 1.3E-11 2.8E-16 134.9 12.1 138 359-511 64-234 (327)
148 TIGR03345 VI_ClpV1 type VI sec 99.3 6.7E-11 1.4E-15 145.0 19.1 159 326-512 566-782 (852)
149 PRK15424 propionate catabolism 99.3 4E-11 8.7E-16 139.7 14.3 212 323-562 216-478 (538)
150 TIGR02329 propionate_PrpR prop 99.3 5E-11 1.1E-15 138.9 14.5 215 322-565 208-466 (526)
151 COG3604 FhlA Transcriptional r 99.2 6.5E-11 1.4E-15 133.1 12.9 204 321-549 218-456 (550)
152 COG0542 clpA ATP-binding subun 99.2 2.8E-10 6E-15 135.6 18.7 221 321-566 165-410 (786)
153 TIGR00764 lon_rel lon-related 99.2 2E-10 4.4E-15 136.1 17.6 103 465-569 268-391 (608)
154 TIGR03015 pepcterm_ATPase puta 99.2 5E-10 1.1E-14 119.0 18.7 191 361-569 45-266 (269)
155 PF05621 TniB: Bacterial TniB 99.2 4.8E-10 1E-14 120.9 18.5 220 326-565 34-285 (302)
156 COG2204 AtoC Response regulato 99.2 1.5E-10 3.3E-15 131.5 15.1 212 322-565 137-387 (464)
157 PRK10865 protein disaggregatio 99.2 2.4E-10 5.2E-15 140.5 18.0 163 325-512 567-781 (857)
158 CHL00095 clpC Clp protease ATP 99.2 2.6E-10 5.6E-15 139.9 18.3 160 326-512 509-734 (821)
159 PRK09112 DNA polymerase III su 99.2 3.8E-10 8.3E-15 125.6 17.8 189 321-544 18-243 (351)
160 TIGR01817 nifA Nif-specific re 99.2 1.4E-10 3.1E-15 135.9 15.1 213 321-564 191-440 (534)
161 TIGR03346 chaperone_ClpB ATP-d 99.2 3.8E-10 8.3E-15 138.9 18.9 166 326-512 565-778 (852)
162 COG0542 clpA ATP-binding subun 99.2 1E-10 2.2E-15 139.2 13.3 160 326-512 491-707 (786)
163 COG0714 MoxR-like ATPases [Gen 99.2 5.2E-10 1.1E-14 123.5 17.2 155 327-509 25-202 (329)
164 TIGR02974 phageshock_pspF psp 99.2 2.7E-10 5.8E-15 125.9 14.9 203 328-561 1-242 (329)
165 TIGR00368 Mg chelatase-related 99.2 3.4E-10 7.4E-15 131.1 16.2 215 322-567 188-497 (499)
166 PRK11388 DNA-binding transcrip 99.2 3.5E-10 7.7E-15 135.3 16.8 214 322-566 321-568 (638)
167 PRK07471 DNA polymerase III su 99.2 9.9E-10 2.1E-14 122.9 18.8 185 321-542 14-239 (365)
168 PRK10820 DNA-binding transcrip 99.2 3.8E-10 8.3E-15 131.9 16.0 211 321-562 199-447 (520)
169 COG1221 PspF Transcriptional r 99.2 1.7E-10 3.6E-15 129.1 12.2 201 321-549 73-309 (403)
170 PRK05564 DNA polymerase III su 99.2 4E-10 8.6E-15 123.5 14.9 153 323-510 1-165 (313)
171 PRK13531 regulatory ATPase Rav 99.1 7.4E-10 1.6E-14 126.5 16.8 214 327-572 21-286 (498)
172 PRK11608 pspF phage shock prot 99.1 5.9E-10 1.3E-14 123.0 15.4 197 324-549 4-240 (326)
173 PHA02244 ATPase-like protein 99.1 1.6E-09 3.4E-14 120.1 18.3 123 359-499 119-263 (383)
174 smart00382 AAA ATPases associa 99.1 2.7E-10 5.8E-15 105.6 10.4 126 359-497 2-147 (148)
175 PF06068 TIP49: TIP49 C-termin 99.1 9.6E-10 2.1E-14 120.9 16.0 66 324-396 22-89 (398)
176 PRK05022 anaerobic nitric oxid 99.1 7.1E-10 1.5E-14 129.4 15.8 199 324-550 185-421 (509)
177 smart00350 MCM minichromosome 99.1 9.8E-10 2.1E-14 128.2 16.7 221 327-569 204-504 (509)
178 KOG1942 DNA helicase, TBP-inte 99.1 1.8E-09 3.8E-14 114.3 16.7 130 419-570 297-439 (456)
179 COG2607 Predicted ATPase (AAA+ 99.1 4.5E-09 9.7E-14 109.1 18.6 194 320-544 54-276 (287)
180 TIGR02031 BchD-ChlD magnesium 99.1 9.1E-10 2E-14 130.3 15.4 192 360-570 17-259 (589)
181 TIGR00678 holB DNA polymerase 99.1 2.3E-09 4.9E-14 108.7 15.8 144 357-532 12-183 (188)
182 PF07728 AAA_5: AAA domain (dy 99.1 1.5E-10 3.3E-15 111.2 6.6 113 361-488 1-139 (139)
183 PRK15429 formate hydrogenlyase 99.1 2.1E-09 4.5E-14 129.7 17.9 200 322-549 372-609 (686)
184 COG1219 ClpX ATP-dependent pro 99.1 2.9E-10 6.3E-15 121.6 9.1 131 327-460 62-203 (408)
185 PRK11331 5-methylcytosine-spec 99.1 1.5E-09 3.3E-14 123.0 14.3 155 325-496 174-357 (459)
186 COG0470 HolB ATPase involved i 99.1 4E-09 8.8E-14 114.7 17.1 148 326-505 1-176 (325)
187 KOG1969 DNA replication checkp 99.0 5.3E-09 1.2E-13 121.7 18.4 206 322-552 267-518 (877)
188 PRK07399 DNA polymerase III su 99.0 5E-09 1.1E-13 115.1 16.7 183 324-543 2-223 (314)
189 PF01078 Mg_chelatase: Magnesi 99.0 2.7E-10 5.9E-15 117.0 6.3 46 324-383 1-46 (206)
190 PF00158 Sigma54_activat: Sigm 99.0 1.3E-09 2.8E-14 109.3 10.3 134 328-489 1-155 (168)
191 PRK04132 replication factor C 99.0 6.3E-09 1.4E-13 126.2 17.5 172 362-566 567-751 (846)
192 KOG0991 Replication factor C, 99.0 3.4E-09 7.4E-14 109.3 12.3 201 321-566 22-234 (333)
193 COG1220 HslU ATP-dependent pro 99.0 4.1E-09 8.9E-14 113.6 12.9 84 419-507 251-346 (444)
194 TIGR00602 rad24 checkpoint pro 99.0 1.1E-08 2.4E-13 121.2 17.2 220 321-567 79-353 (637)
195 PRK08058 DNA polymerase III su 99.0 6.7E-09 1.5E-13 114.8 14.3 153 324-507 3-179 (329)
196 KOG0741 AAA+-type ATPase [Post 98.9 1.2E-08 2.6E-13 115.0 15.2 155 337-507 522-683 (744)
197 COG1239 ChlI Mg-chelatase subu 98.9 1.2E-08 2.6E-13 113.7 13.8 162 321-512 12-234 (423)
198 PRK09862 putative ATP-dependen 98.9 2.8E-08 6E-13 115.2 16.9 211 323-567 188-490 (506)
199 TIGR02915 PEP_resp_reg putativ 98.9 9.4E-09 2E-13 117.5 13.0 209 324-563 137-383 (445)
200 COG0606 Predicted ATPase with 98.9 3.4E-09 7.4E-14 119.4 8.9 47 322-382 175-221 (490)
201 PRK10923 glnG nitrogen regulat 98.9 1.8E-08 3.9E-13 116.0 15.3 212 324-566 136-385 (469)
202 PRK08116 hypothetical protein; 98.9 1.1E-08 2.3E-13 110.2 12.3 130 359-508 114-258 (268)
203 smart00763 AAA_PrkA PrkA AAA d 98.9 2.1E-08 4.6E-13 111.1 14.8 84 324-414 48-144 (361)
204 PF07724 AAA_2: AAA domain (Cd 98.9 4.5E-09 9.7E-14 105.8 8.1 111 361-477 5-132 (171)
205 PRK05707 DNA polymerase III su 98.9 1.8E-08 3.9E-13 111.4 13.4 131 356-509 19-177 (328)
206 PRK11361 acetoacetate metaboli 98.9 3.3E-08 7.1E-13 113.3 15.4 212 324-566 141-390 (457)
207 PTZ00111 DNA replication licen 98.8 6.7E-08 1.5E-12 117.1 17.2 134 357-507 490-654 (915)
208 PRK13765 ATP-dependent proteas 98.8 4.7E-08 1E-12 116.2 15.0 102 465-568 277-399 (637)
209 KOG1514 Origin recognition com 98.8 1.5E-07 3.3E-12 109.7 18.3 196 361-572 424-658 (767)
210 PF13177 DNA_pol3_delta2: DNA 98.8 3E-08 6.6E-13 98.8 10.8 133 330-496 1-160 (162)
211 PRK15115 response regulator Gl 98.8 1.1E-07 2.4E-12 108.7 16.4 209 327-566 135-381 (444)
212 KOG0745 Putative ATP-dependent 98.8 2.6E-08 5.6E-13 110.4 10.5 98 360-459 227-331 (564)
213 KOG2680 DNA helicase TIP49, TB 98.8 1.9E-07 4.2E-12 99.4 16.2 92 475-570 339-430 (454)
214 TIGR01818 ntrC nitrogen regula 98.7 1.5E-07 3.2E-12 108.3 16.1 211 325-566 133-381 (463)
215 PF14532 Sigma54_activ_2: Sigm 98.7 2E-08 4.3E-13 97.0 6.9 78 329-430 1-81 (138)
216 PRK06964 DNA polymerase III su 98.7 5.7E-08 1.2E-12 107.8 10.6 134 356-509 18-203 (342)
217 KOG2227 Pre-initiation complex 98.7 4.7E-07 1E-11 101.7 17.5 224 327-573 151-419 (529)
218 PRK08769 DNA polymerase III su 98.7 5.6E-07 1.2E-11 99.1 17.0 134 355-508 22-183 (319)
219 PRK12377 putative replication 98.7 1.6E-07 3.4E-12 100.0 12.0 126 323-474 71-205 (248)
220 PRK06871 DNA polymerase III su 98.6 5.1E-07 1.1E-11 99.6 15.6 135 355-509 20-178 (325)
221 PRK07952 DNA replication prote 98.6 2.2E-07 4.7E-12 98.7 12.1 99 360-474 100-204 (244)
222 PRK10365 transcriptional regul 98.6 5.8E-07 1.3E-11 102.5 16.0 209 327-566 140-386 (441)
223 KOG0990 Replication factor C, 98.6 7E-07 1.5E-11 96.3 15.0 188 321-547 36-235 (360)
224 PRK08181 transposase; Validate 98.6 3.7E-07 8E-12 98.3 12.3 100 359-475 106-209 (269)
225 PF07726 AAA_3: ATPase family 98.6 3.6E-08 7.7E-13 94.2 3.4 111 361-488 1-129 (131)
226 PRK07993 DNA polymerase III su 98.6 5E-07 1.1E-11 100.2 12.7 134 355-508 20-178 (334)
227 PRK06526 transposase; Provisio 98.5 2.4E-07 5.2E-12 99.0 8.7 100 359-475 98-201 (254)
228 PRK06090 DNA polymerase III su 98.5 9.9E-07 2.1E-11 97.1 13.2 131 355-508 21-178 (319)
229 COG3283 TyrR Transcriptional r 98.5 1E-06 2.2E-11 96.0 13.0 216 321-564 199-444 (511)
230 PRK08939 primosomal protein Dn 98.5 4.3E-07 9.4E-12 99.6 10.2 71 358-430 155-229 (306)
231 PRK13406 bchD magnesium chelat 98.5 7.8E-07 1.7E-11 105.1 12.5 188 360-570 26-251 (584)
232 PRK08699 DNA polymerase III su 98.5 1.2E-06 2.6E-11 96.9 12.8 133 356-508 18-183 (325)
233 PRK06835 DNA replication prote 98.4 7.8E-07 1.7E-11 98.4 10.6 69 360-430 184-258 (329)
234 KOG1051 Chaperone HSP104 and r 98.4 1.1E-06 2.4E-11 106.5 12.3 128 326-474 562-710 (898)
235 COG1484 DnaC DNA replication p 98.4 1.1E-06 2.3E-11 94.1 10.4 87 332-430 89-179 (254)
236 PRK09183 transposase/IS protei 98.4 1.1E-06 2.3E-11 94.3 10.2 71 359-430 102-176 (259)
237 PF13173 AAA_14: AAA domain 98.4 1.7E-06 3.6E-11 82.6 10.5 121 360-501 3-126 (128)
238 PF01637 Arch_ATPase: Archaeal 98.4 1.2E-06 2.6E-11 89.9 10.0 164 359-538 20-231 (234)
239 PF01695 IstB_IS21: IstB-like 98.4 4.2E-07 9.1E-12 92.1 6.0 70 358-429 46-119 (178)
240 PF03215 Rad17: Rad17 cell cyc 98.3 9.8E-06 2.1E-10 94.7 16.8 204 322-550 15-269 (519)
241 PRK06921 hypothetical protein; 98.3 1.6E-06 3.5E-11 93.3 9.1 68 359-429 117-188 (266)
242 PF13401 AAA_22: AAA domain; P 98.3 3.2E-06 6.9E-11 79.7 10.1 98 359-472 4-125 (131)
243 KOG2035 Replication factor C, 98.3 1.2E-05 2.6E-10 85.4 14.8 177 323-532 10-220 (351)
244 COG3284 AcoR Transcriptional a 98.3 1.2E-06 2.7E-11 101.8 7.7 207 329-567 316-555 (606)
245 PF12775 AAA_7: P-loop contain 98.3 7.5E-06 1.6E-10 88.5 12.7 137 360-512 34-195 (272)
246 COG3267 ExeA Type II secretory 98.2 2.6E-05 5.7E-10 82.3 15.8 185 362-563 54-267 (269)
247 KOG0478 DNA replication licens 98.2 1.9E-05 4.1E-10 92.2 15.1 157 327-500 430-616 (804)
248 PF05729 NACHT: NACHT domain 98.2 2E-05 4.4E-10 76.6 12.8 142 361-512 2-165 (166)
249 PF06480 FtsH_ext: FtsH Extrac 98.2 6.1E-06 1.3E-10 75.4 8.2 87 155-252 22-108 (110)
250 COG1241 MCM2 Predicted ATPase 98.2 1E-05 2.2E-10 96.4 11.8 221 326-569 286-592 (682)
251 PF00493 MCM: MCM2/3/5 family 98.2 7.5E-07 1.6E-11 98.8 2.1 220 327-569 25-326 (331)
252 cd01120 RecA-like_NTPases RecA 98.1 6.8E-06 1.5E-10 79.3 8.0 110 362-476 2-138 (165)
253 PF00931 NB-ARC: NB-ARC domain 98.0 9.9E-05 2.2E-09 79.1 15.2 159 359-541 19-202 (287)
254 PF12774 AAA_6: Hydrolytic ATP 98.0 5.1E-05 1.1E-09 80.2 12.5 132 359-515 32-182 (231)
255 PF03969 AFG1_ATPase: AFG1-lik 98.0 1.5E-05 3.3E-10 89.4 8.9 137 356-521 59-204 (362)
256 KOG0480 DNA replication licens 98.0 4.9E-05 1.1E-09 88.3 12.7 223 325-569 344-643 (764)
257 PLN03210 Resistant to P. syrin 98.0 5.4E-05 1.2E-09 96.9 14.4 180 321-534 179-389 (1153)
258 KOG1970 Checkpoint RAD17-RFC c 98.0 0.00023 4.9E-09 81.9 17.3 173 361-549 112-320 (634)
259 TIGR02237 recomb_radB DNA repa 98.0 3.1E-05 6.8E-10 79.6 9.5 110 360-473 13-148 (209)
260 PRK05917 DNA polymerase III su 97.9 4.8E-05 1E-09 82.7 10.9 123 355-497 15-154 (290)
261 cd01124 KaiC KaiC is a circadi 97.8 0.00014 2.9E-09 73.0 11.4 32 362-393 2-36 (187)
262 PRK07276 DNA polymerase III su 97.8 0.00046 9.9E-09 75.3 15.9 129 355-506 20-171 (290)
263 TIGR02012 tigrfam_recA protein 97.8 9.7E-05 2.1E-09 81.5 10.8 114 360-473 56-190 (321)
264 KOG0482 DNA replication licens 97.8 3.6E-05 7.8E-10 87.2 7.3 227 327-569 343-638 (721)
265 PF13191 AAA_16: AAA ATPase do 97.8 4.9E-05 1.1E-09 75.6 7.5 59 328-395 2-63 (185)
266 PRK07132 DNA polymerase III su 97.8 0.00036 7.8E-09 76.5 14.6 128 356-508 15-160 (299)
267 PF00910 RNA_helicase: RNA hel 97.8 5.8E-05 1.3E-09 70.0 7.2 22 362-383 1-22 (107)
268 PRK08118 topology modulation p 97.7 0.00013 2.8E-09 73.2 9.5 103 361-514 3-105 (167)
269 COG1116 TauB ABC-type nitrate/ 97.7 6.9E-05 1.5E-09 79.1 7.0 29 354-382 22-52 (248)
270 TIGR01618 phage_P_loop phage n 97.7 7.9E-05 1.7E-09 78.1 7.0 73 358-432 11-95 (220)
271 COG1618 Predicted nucleotide k 97.7 0.00021 4.6E-09 70.9 9.3 27 357-383 3-29 (179)
272 cd00983 recA RecA is a bacter 97.7 0.00023 5.1E-09 78.6 10.6 112 361-472 57-189 (325)
273 PRK05818 DNA polymerase III su 97.6 0.00047 1E-08 73.8 12.4 121 357-497 5-147 (261)
274 TIGR02688 conserved hypothetic 97.6 0.00089 1.9E-08 76.1 14.8 186 359-570 209-434 (449)
275 COG1373 Predicted ATPase (AAA+ 97.6 0.0045 9.8E-08 70.6 20.7 123 361-504 39-161 (398)
276 COG1485 Predicted ATPase [Gene 97.6 9.7E-05 2.1E-09 81.3 6.5 162 331-521 30-207 (367)
277 TIGR02858 spore_III_AA stage I 97.6 0.00019 4.2E-09 77.5 8.5 113 360-495 112-256 (270)
278 KOG1051 Chaperone HSP104 and r 97.6 0.00052 1.1E-08 84.0 12.8 163 324-512 184-365 (898)
279 PRK09361 radB DNA repair and r 97.6 0.00033 7E-09 73.1 9.7 113 359-473 23-160 (225)
280 KOG1968 Replication factor C, 97.6 0.00014 3E-09 89.3 7.8 204 322-548 316-535 (871)
281 PHA00729 NTP-binding motif con 97.5 0.00019 4.1E-09 75.4 6.7 24 361-384 19-42 (226)
282 PRK14722 flhF flagellar biosyn 97.5 0.0005 1.1E-08 77.5 10.4 109 359-483 137-267 (374)
283 cd01121 Sms Sms (bacterial rad 97.5 0.00026 5.7E-09 79.8 8.3 74 359-432 82-172 (372)
284 cd01394 radB RadB. The archaea 97.5 0.00079 1.7E-08 69.8 11.1 138 358-498 16-188 (218)
285 PRK15455 PrkA family serine pr 97.5 0.00017 3.8E-09 84.3 6.7 63 323-392 73-137 (644)
286 PRK11823 DNA repair protein Ra 97.5 0.0003 6.5E-09 81.3 8.6 74 359-432 80-170 (446)
287 PRK00131 aroK shikimate kinase 97.5 0.0004 8.6E-09 68.6 8.3 42 358-401 3-44 (175)
288 KOG2170 ATPase of the AAA+ sup 97.4 0.0019 4E-08 70.0 13.5 95 327-430 83-190 (344)
289 PF13207 AAA_17: AAA domain; P 97.4 0.0001 2.2E-09 68.8 3.6 30 362-391 2-31 (121)
290 PF05707 Zot: Zonular occluden 97.4 0.00017 3.6E-09 73.9 5.2 124 362-498 3-147 (193)
291 cd03283 ABC_MutS-like MutS-lik 97.4 0.00073 1.6E-08 69.7 9.8 103 360-479 26-152 (199)
292 PRK00771 signal recognition pa 97.4 0.0033 7.2E-08 72.4 15.9 192 357-569 93-332 (437)
293 PRK06067 flagellar accessory p 97.4 0.00094 2E-08 70.2 10.4 39 355-393 21-62 (234)
294 PRK08533 flagellar accessory p 97.4 0.00086 1.9E-08 70.8 10.0 73 359-431 24-130 (230)
295 PRK07261 topology modulation p 97.4 0.00036 7.7E-09 70.2 6.6 34 362-395 3-36 (171)
296 PF13671 AAA_33: AAA domain; P 97.4 0.00065 1.4E-08 65.0 8.1 37 362-400 2-38 (143)
297 KOG2543 Origin recognition com 97.3 0.004 8.7E-08 69.4 14.3 160 326-509 6-192 (438)
298 KOG0477 DNA replication licens 97.3 0.0013 2.9E-08 76.5 11.0 31 360-390 483-513 (854)
299 cd03238 ABC_UvrA The excision 97.3 0.0015 3.3E-08 66.3 10.3 119 356-496 16-163 (176)
300 PRK09354 recA recombinase A; P 97.3 0.0013 2.8E-08 73.4 10.5 111 361-471 62-193 (349)
301 cd03216 ABC_Carb_Monos_I This 97.3 0.00081 1.8E-08 66.9 7.8 103 360-477 27-144 (163)
302 PRK12723 flagellar biosynthesi 97.3 0.0019 4.2E-08 73.2 11.7 131 358-504 173-329 (388)
303 COG5271 MDN1 AAA ATPase contai 97.3 0.00092 2E-08 83.9 9.5 138 358-511 1542-1704(4600)
304 PRK09376 rho transcription ter 97.2 0.0014 3.1E-08 73.8 10.3 73 362-434 172-272 (416)
305 KOG0481 DNA replication licens 97.2 0.0025 5.4E-08 72.9 12.0 137 360-508 365-525 (729)
306 PRK12339 2-phosphoglycerate ki 97.2 0.0042 9.2E-08 64.1 12.8 35 359-395 3-37 (197)
307 cd01128 rho_factor Transcripti 97.2 0.0025 5.4E-08 68.2 11.4 25 361-385 18-42 (249)
308 PF00437 T2SE: Type II/IV secr 97.2 0.00044 9.6E-09 74.2 5.8 98 320-427 98-206 (270)
309 COG4619 ABC-type uncharacteriz 97.2 0.0019 4.1E-08 64.8 9.4 22 361-382 31-52 (223)
310 cd00046 DEXDc DEAD-like helica 97.2 0.002 4.3E-08 59.5 9.2 24 360-383 1-24 (144)
311 PRK14532 adenylate kinase; Pro 97.2 0.0027 5.8E-08 64.2 10.9 36 361-398 2-37 (188)
312 KOG2228 Origin recognition com 97.1 0.004 8.6E-08 68.4 12.1 160 327-510 25-219 (408)
313 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.0027 5.9E-08 66.2 10.6 112 359-482 29-161 (213)
314 TIGR02782 TrbB_P P-type conjug 97.1 0.00063 1.4E-08 74.6 5.9 69 359-427 132-213 (299)
315 PRK06762 hypothetical protein; 97.1 0.0016 3.4E-08 64.6 8.2 40 359-398 2-41 (166)
316 PF14516 AAA_35: AAA-like doma 97.1 0.022 4.8E-07 63.4 18.1 169 361-544 33-242 (331)
317 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0017 3.8E-08 67.8 8.7 115 357-473 17-168 (235)
318 PRK09519 recA DNA recombinatio 97.1 0.0025 5.4E-08 77.7 11.0 113 359-471 60-193 (790)
319 PRK10536 hypothetical protein; 97.1 0.0027 5.9E-08 68.0 10.0 45 324-382 53-97 (262)
320 cd01393 recA_like RecA is a b 97.1 0.0015 3.3E-08 67.8 8.1 115 357-473 17-167 (226)
321 PRK13949 shikimate kinase; Pro 97.1 0.0027 5.8E-08 63.9 9.5 32 360-391 2-33 (169)
322 cd01131 PilT Pilus retraction 97.1 0.00095 2.1E-08 68.7 6.4 66 362-427 4-83 (198)
323 cd01130 VirB11-like_ATPase Typ 97.1 0.00093 2E-08 67.9 6.2 69 359-427 25-109 (186)
324 PRK11889 flhF flagellar biosyn 97.0 0.0058 1.3E-07 69.2 12.5 92 332-427 217-329 (436)
325 PF03266 NTPase_1: NTPase; In 97.0 0.0014 3E-08 66.1 6.9 27 361-387 1-30 (168)
326 PF07693 KAP_NTPase: KAP famil 97.0 0.0092 2E-07 65.3 13.9 80 418-513 172-266 (325)
327 cd00464 SK Shikimate kinase (S 97.0 0.0012 2.5E-08 64.1 6.1 39 361-401 1-39 (154)
328 TIGR00416 sms DNA repair prote 97.0 0.0018 3.9E-08 75.0 8.5 73 360-432 95-184 (454)
329 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0031 6.7E-08 61.6 8.9 100 360-477 27-129 (144)
330 PRK14974 cell division protein 97.0 0.0061 1.3E-07 68.0 12.2 35 359-393 140-177 (336)
331 COG1127 Ttg2A ABC-type transpo 97.0 0.0011 2.3E-08 69.9 5.8 55 408-476 153-207 (263)
332 COG4178 ABC-type uncharacteriz 97.0 0.0014 3E-08 77.4 7.4 55 406-476 521-575 (604)
333 PF01745 IPT: Isopentenyl tran 97.0 0.0025 5.5E-08 66.2 8.3 134 362-513 4-142 (233)
334 PRK13948 shikimate kinase; Pro 97.0 0.0024 5.3E-08 65.1 8.2 42 358-401 9-50 (182)
335 COG2274 SunT ABC-type bacterio 97.0 0.0021 4.6E-08 78.1 9.0 70 405-497 614-683 (709)
336 PF00448 SRP54: SRP54-type pro 97.0 0.0027 5.8E-08 65.5 8.5 109 359-480 1-132 (196)
337 PRK13947 shikimate kinase; Pro 97.0 0.00074 1.6E-08 67.1 4.2 31 361-391 3-33 (171)
338 TIGR01420 pilT_fam pilus retra 97.0 0.0019 4.2E-08 72.1 7.9 67 361-427 124-204 (343)
339 cd03228 ABCC_MRP_Like The MRP 97.0 0.0025 5.4E-08 63.8 7.9 103 360-478 29-158 (171)
340 PF06745 KaiC: KaiC; InterPro 96.9 0.0053 1.1E-07 64.0 10.6 97 355-458 15-148 (226)
341 cd01122 GP4d_helicase GP4d_hel 96.9 0.0038 8.2E-08 66.8 9.6 38 355-392 26-67 (271)
342 PF13604 AAA_30: AAA domain; P 96.9 0.0035 7.5E-08 64.5 8.8 97 361-474 20-132 (196)
343 TIGR03877 thermo_KaiC_1 KaiC d 96.9 0.0089 1.9E-07 63.2 12.1 40 355-394 17-59 (237)
344 cd00984 DnaB_C DnaB helicase C 96.9 0.0046 9.9E-08 64.9 9.8 38 355-392 9-50 (242)
345 PF06309 Torsin: Torsin; Inte 96.9 0.0034 7.4E-08 60.3 7.9 52 326-383 25-77 (127)
346 PRK03839 putative kinase; Prov 96.9 0.00079 1.7E-08 67.7 3.9 30 362-391 3-32 (180)
347 COG3854 SpoIIIAA ncharacterize 96.9 0.0055 1.2E-07 64.3 9.9 69 361-429 139-229 (308)
348 cd03222 ABC_RNaseL_inhibitor T 96.9 0.0022 4.8E-08 65.1 7.0 103 361-477 27-134 (177)
349 PRK13900 type IV secretion sys 96.9 0.0023 5E-08 71.2 7.8 69 359-427 160-244 (332)
350 PF05272 VirE: Virulence-assoc 96.9 0.0066 1.4E-07 62.8 10.6 125 335-496 34-169 (198)
351 cd00544 CobU Adenosylcobinamid 96.9 0.0084 1.8E-07 60.5 11.0 96 362-459 2-114 (169)
352 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0049 1.1E-07 65.5 9.9 36 362-397 2-40 (249)
353 PRK05800 cobU adenosylcobinami 96.9 0.0081 1.7E-07 60.6 10.9 95 361-459 3-114 (170)
354 cd03247 ABCC_cytochrome_bd The 96.9 0.0062 1.3E-07 61.3 10.0 103 360-478 29-160 (178)
355 COG1121 ZnuC ABC-type Mn/Zn tr 96.9 0.0057 1.2E-07 65.4 10.1 58 405-477 144-201 (254)
356 PRK12724 flagellar biosynthesi 96.9 0.014 3.1E-07 66.7 13.8 115 359-483 223-354 (432)
357 cd03246 ABCC_Protease_Secretio 96.9 0.0042 9.2E-08 62.2 8.7 101 361-476 30-157 (173)
358 PRK13833 conjugal transfer pro 96.9 0.002 4.2E-08 71.5 6.8 69 359-427 144-224 (323)
359 PRK14527 adenylate kinase; Pro 96.9 0.0085 1.8E-07 61.0 11.0 32 358-389 5-36 (191)
360 PRK04296 thymidine kinase; Pro 96.8 0.0036 7.9E-08 64.0 8.3 69 362-430 5-90 (190)
361 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.005 1.1E-07 60.5 9.0 105 360-479 26-144 (157)
362 PRK05973 replicative DNA helic 96.8 0.007 1.5E-07 64.3 10.5 34 360-393 65-101 (237)
363 PF10236 DAP3: Mitochondrial r 96.8 0.078 1.7E-06 58.6 19.1 133 407-540 142-308 (309)
364 PRK00625 shikimate kinase; Pro 96.8 0.001 2.2E-08 67.3 4.1 31 361-391 2-32 (173)
365 PRK13946 shikimate kinase; Pro 96.8 0.0023 5.1E-08 64.9 6.7 34 358-391 9-42 (184)
366 PRK10867 signal recognition pa 96.8 0.03 6.5E-07 64.6 16.2 71 357-427 98-192 (433)
367 COG1136 SalX ABC-type antimicr 96.8 0.0092 2E-07 62.9 11.1 69 406-495 148-216 (226)
368 COG0563 Adk Adenylate kinase a 96.8 0.0055 1.2E-07 62.4 9.1 34 361-396 2-35 (178)
369 smart00534 MUTSac ATPase domai 96.8 0.0069 1.5E-07 61.6 10.0 19 362-380 2-20 (185)
370 cd03223 ABCD_peroxisomal_ALDP 96.8 0.0066 1.4E-07 60.6 9.6 98 361-476 29-149 (166)
371 PRK13695 putative NTPase; Prov 96.8 0.0086 1.9E-07 60.0 10.5 22 362-383 3-24 (174)
372 PRK13894 conjugal transfer ATP 96.8 0.0023 5E-08 70.9 6.8 69 359-427 148-228 (319)
373 TIGR02788 VirB11 P-type DNA tr 96.8 0.0029 6.4E-08 69.6 7.6 71 357-427 142-227 (308)
374 PLN02200 adenylate kinase fami 96.8 0.0016 3.5E-08 69.0 5.2 42 355-398 39-80 (234)
375 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.0012 2.5E-08 66.4 4.0 35 362-398 2-36 (183)
376 COG0703 AroK Shikimate kinase 96.8 0.0026 5.6E-08 64.2 6.2 32 360-391 3-34 (172)
377 KOG3347 Predicted nucleotide k 96.7 0.0011 2.4E-08 65.0 3.4 35 360-396 8-42 (176)
378 cd00227 CPT Chloramphenicol (C 96.7 0.0013 2.8E-08 66.1 3.8 38 360-397 3-40 (175)
379 COG1120 FepC ABC-type cobalami 96.7 0.0044 9.6E-08 66.4 8.0 32 352-383 19-52 (258)
380 PRK00279 adk adenylate kinase; 96.7 0.0099 2.1E-07 61.8 10.3 33 362-396 3-35 (215)
381 cd01129 PulE-GspE PulE/GspE Th 96.7 0.0053 1.1E-07 66.2 8.5 91 323-427 57-158 (264)
382 cd02020 CMPK Cytidine monophos 96.7 0.0015 3.2E-08 62.7 3.8 30 362-391 2-31 (147)
383 PRK06217 hypothetical protein; 96.7 0.0016 3.5E-08 65.9 4.1 31 361-391 3-33 (183)
384 cd02027 APSK Adenosine 5'-phos 96.7 0.0054 1.2E-07 60.3 7.6 66 362-427 2-79 (149)
385 PRK13764 ATPase; Provisional 96.7 0.0028 6.2E-08 75.4 6.7 68 359-427 257-333 (602)
386 COG4088 Predicted nucleotide k 96.7 0.0062 1.3E-07 62.9 8.1 22 362-383 4-25 (261)
387 PHA02624 large T antigen; Prov 96.7 0.0049 1.1E-07 72.7 8.4 119 357-495 429-560 (647)
388 cd03243 ABC_MutS_homologs The 96.6 0.0064 1.4E-07 62.5 8.4 21 361-381 31-51 (202)
389 PRK14531 adenylate kinase; Pro 96.6 0.0019 4E-08 65.5 4.4 35 360-396 3-37 (183)
390 cd03280 ABC_MutS2 MutS2 homolo 96.6 0.0089 1.9E-07 61.4 9.4 20 361-380 30-49 (200)
391 KOG2383 Predicted ATPase [Gene 96.6 0.011 2.3E-07 66.4 10.3 161 356-546 111-297 (467)
392 TIGR03881 KaiC_arch_4 KaiC dom 96.6 0.02 4.3E-07 59.8 12.0 38 355-392 16-56 (229)
393 TIGR03880 KaiC_arch_3 KaiC dom 96.6 0.016 3.5E-07 60.4 11.3 38 357-394 14-54 (224)
394 PF00406 ADK: Adenylate kinase 96.6 0.012 2.6E-07 57.5 9.7 35 364-400 1-35 (151)
395 PF04665 Pox_A32: Poxvirus A32 96.6 0.017 3.7E-07 61.5 11.4 132 358-509 12-169 (241)
396 cd01428 ADK Adenylate kinase ( 96.6 0.0018 3.8E-08 65.4 3.9 34 362-397 2-35 (194)
397 PLN02674 adenylate kinase 96.6 0.0081 1.8E-07 64.1 9.1 39 358-398 30-68 (244)
398 COG3842 PotA ABC-type spermidi 96.6 0.0034 7.3E-08 70.1 6.4 28 354-381 24-53 (352)
399 PTZ00088 adenylate kinase 1; P 96.6 0.0022 4.7E-08 67.8 4.6 37 358-396 5-41 (229)
400 cd02021 GntK Gluconate kinase 96.6 0.0019 4.1E-08 62.8 3.9 32 362-395 2-33 (150)
401 PRK13851 type IV secretion sys 96.6 0.003 6.5E-08 70.6 5.9 70 358-427 161-245 (344)
402 PRK04040 adenylate kinase; Pro 96.6 0.0081 1.8E-07 61.5 8.6 35 359-395 2-38 (188)
403 PRK04301 radA DNA repair and r 96.6 0.0099 2.1E-07 65.7 9.9 116 356-473 99-251 (317)
404 cd03230 ABC_DR_subfamily_A Thi 96.6 0.016 3.5E-07 58.1 10.5 101 361-476 28-156 (173)
405 cd03115 SRP The signal recogni 96.6 0.018 3.8E-07 57.5 10.7 33 362-394 3-38 (173)
406 PRK05703 flhF flagellar biosyn 96.6 0.023 5E-07 65.4 13.0 111 359-483 221-352 (424)
407 TIGR03499 FlhF flagellar biosy 96.6 0.0083 1.8E-07 65.3 9.0 37 358-394 193-234 (282)
408 PF06414 Zeta_toxin: Zeta toxi 96.5 0.0075 1.6E-07 61.9 8.2 43 357-399 13-56 (199)
409 TIGR02236 recomb_radA DNA repa 96.5 0.013 2.8E-07 64.3 10.5 116 356-473 92-245 (310)
410 PRK10416 signal recognition pa 96.5 0.037 8.1E-07 61.3 13.8 36 358-393 113-151 (318)
411 cd03214 ABC_Iron-Siderophores_ 96.5 0.012 2.6E-07 59.3 9.2 104 361-478 27-161 (180)
412 PRK04841 transcriptional regul 96.5 0.028 6.1E-07 70.1 14.4 151 360-534 33-219 (903)
413 PRK08154 anaerobic benzoate ca 96.5 0.0082 1.8E-07 66.2 8.6 33 357-389 131-163 (309)
414 TIGR03796 NHPM_micro_ABC1 NHPM 96.5 0.0052 1.1E-07 75.0 7.8 33 351-383 495-529 (710)
415 cd03227 ABC_Class2 ABC-type Cl 96.5 0.016 3.5E-07 57.6 9.8 22 360-381 22-43 (162)
416 TIGR01313 therm_gnt_kin carboh 96.5 0.0022 4.7E-08 63.3 3.5 32 362-395 1-32 (163)
417 COG5245 DYN1 Dynein, heavy cha 96.5 0.012 2.7E-07 74.0 10.4 175 358-545 1493-1712(3164)
418 TIGR02238 recomb_DMC1 meiotic 96.5 0.012 2.7E-07 65.0 9.7 110 360-471 97-242 (313)
419 smart00487 DEXDc DEAD-like hel 96.5 0.015 3.1E-07 57.2 9.3 33 360-392 25-62 (201)
420 TIGR02525 plasmid_TraJ plasmid 96.5 0.0051 1.1E-07 69.5 6.8 67 361-427 151-234 (372)
421 COG1131 CcmA ABC-type multidru 96.5 0.012 2.5E-07 64.6 9.3 56 410-479 146-201 (293)
422 cd03215 ABC_Carb_Monos_II This 96.4 0.011 2.5E-07 59.6 8.6 23 361-383 28-50 (182)
423 COG2804 PulE Type II secretory 96.4 0.0087 1.9E-07 69.1 8.5 95 320-428 232-337 (500)
424 PRK11174 cysteine/glutathione 96.4 0.0068 1.5E-07 72.3 8.1 31 353-383 368-400 (588)
425 cd03229 ABC_Class3 This class 96.4 0.0097 2.1E-07 59.9 8.0 104 361-478 28-164 (178)
426 TIGR00959 ffh signal recogniti 96.4 0.053 1.2E-06 62.5 14.9 71 357-427 97-191 (428)
427 PRK14530 adenylate kinase; Pro 96.4 0.0026 5.7E-08 66.0 4.0 35 361-397 5-39 (215)
428 cd01125 repA Hexameric Replica 96.4 0.012 2.6E-07 62.1 9.0 20 362-381 4-23 (239)
429 PF13481 AAA_25: AAA domain; P 96.4 0.0082 1.8E-07 60.6 7.4 72 362-433 35-156 (193)
430 PRK03731 aroL shikimate kinase 96.4 0.0033 7.2E-08 62.5 4.3 31 360-390 3-33 (171)
431 cd02019 NK Nucleoside/nucleoti 96.4 0.0071 1.5E-07 51.6 5.7 31 362-392 2-33 (69)
432 PRK05057 aroK shikimate kinase 96.4 0.0035 7.5E-08 63.2 4.3 34 359-392 4-37 (172)
433 PHA02530 pseT polynucleotide k 96.4 0.0098 2.1E-07 64.6 8.1 39 359-398 2-40 (300)
434 PRK04328 hypothetical protein; 96.4 0.032 6.9E-07 59.6 11.8 38 355-392 19-59 (249)
435 PRK08233 hypothetical protein; 96.4 0.0084 1.8E-07 59.8 6.9 31 361-391 5-36 (182)
436 TIGR03797 NHPM_micro_ABC2 NHPM 96.3 0.0084 1.8E-07 72.9 8.2 29 355-383 473-503 (686)
437 COG1102 Cmk Cytidylate kinase 96.3 0.0031 6.8E-08 62.8 3.5 28 362-389 3-30 (179)
438 COG1936 Predicted nucleotide k 96.3 0.0058 1.3E-07 61.6 5.5 32 362-396 3-34 (180)
439 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.03 6.6E-07 60.1 11.5 38 356-393 33-73 (259)
440 PRK06547 hypothetical protein; 96.3 0.0036 7.9E-08 63.2 4.1 33 358-390 14-46 (172)
441 COG1126 GlnQ ABC-type polar am 96.3 0.021 4.5E-07 59.7 9.5 27 355-381 22-50 (240)
442 PF13521 AAA_28: AAA domain; P 96.3 0.0053 1.1E-07 60.7 5.1 34 362-396 2-35 (163)
443 PRK04220 2-phosphoglycerate ki 96.3 0.14 3E-06 56.4 16.3 39 357-396 90-128 (301)
444 TIGR01360 aden_kin_iso1 adenyl 96.3 0.0038 8.3E-08 62.5 4.1 34 361-396 5-38 (188)
445 TIGR01526 nadR_NMN_Atrans nico 96.3 0.0074 1.6E-07 67.0 6.7 71 359-430 162-243 (325)
446 PRK14528 adenylate kinase; Pro 96.3 0.0037 8.1E-08 63.7 4.0 30 361-390 3-32 (186)
447 PRK06696 uridine kinase; Valid 96.3 0.0075 1.6E-07 63.1 6.3 38 359-396 22-62 (223)
448 COG1118 CysA ABC-type sulfate/ 96.3 0.015 3.3E-07 63.4 8.6 21 362-382 31-51 (345)
449 TIGR02655 circ_KaiC circadian 96.3 0.021 4.6E-07 66.8 10.6 73 360-432 264-367 (484)
450 PRK05541 adenylylsulfate kinas 96.3 0.014 3.1E-07 58.4 8.0 41 358-398 6-49 (176)
451 TIGR00064 ftsY signal recognit 96.2 0.066 1.4E-06 58.1 13.6 37 357-393 70-109 (272)
452 PRK08099 bifunctional DNA-bind 96.2 0.01 2.3E-07 67.7 7.8 39 359-397 219-257 (399)
453 PRK11176 lipid transporter ATP 96.2 0.011 2.4E-07 70.4 8.3 33 351-383 359-393 (582)
454 COG2074 2-phosphoglycerate kin 96.2 0.15 3.2E-06 54.4 15.5 186 356-571 86-283 (299)
455 PLN03187 meiotic recombination 96.2 0.015 3.2E-07 65.2 8.6 108 362-471 129-272 (344)
456 COG2884 FtsE Predicted ATPase 96.2 0.024 5.2E-07 58.1 9.3 59 406-479 143-201 (223)
457 cd03233 ABC_PDR_domain1 The pl 96.2 0.021 4.6E-07 58.7 9.2 23 361-383 35-57 (202)
458 cd03213 ABCG_EPDR ABCG transpo 96.2 0.027 5.9E-07 57.6 9.9 24 360-383 36-59 (194)
459 TIGR02868 CydC thiol reductant 96.2 0.011 2.4E-07 69.6 7.9 33 351-383 351-385 (529)
460 PRK02496 adk adenylate kinase; 96.2 0.0045 9.8E-08 62.5 4.1 30 361-390 3-32 (184)
461 TIGR01351 adk adenylate kinase 96.2 0.0044 9.5E-08 64.2 4.0 33 362-396 2-34 (210)
462 cd03218 ABC_YhbG The ABC trans 96.2 0.017 3.7E-07 60.3 8.5 23 361-383 28-50 (232)
463 PRK13808 adenylate kinase; Pro 96.2 0.039 8.4E-07 61.5 11.5 33 362-396 3-35 (333)
464 PTZ00035 Rad51 protein; Provis 96.2 0.02 4.4E-07 64.0 9.3 110 360-471 119-264 (337)
465 TIGR03375 type_I_sec_LssB type 96.1 0.011 2.3E-07 72.1 7.6 31 353-383 483-515 (694)
466 COG4650 RtcR Sigma54-dependent 96.1 0.0082 1.8E-07 64.6 5.7 77 355-431 204-295 (531)
467 TIGR02533 type_II_gspE general 96.1 0.017 3.7E-07 67.6 9.0 92 322-427 218-320 (486)
468 PF08423 Rad51: Rad51; InterP 96.1 0.021 4.5E-07 61.4 8.9 108 364-473 43-186 (256)
469 cd03232 ABC_PDR_domain2 The pl 96.1 0.03 6.5E-07 57.1 9.7 101 361-476 35-169 (192)
470 TIGR02857 CydD thiol reductant 96.1 0.014 3E-07 68.7 8.3 33 351-383 338-372 (529)
471 PF13238 AAA_18: AAA domain; P 96.1 0.0041 8.9E-08 57.9 3.1 22 362-383 1-22 (129)
472 TIGR01448 recD_rel helicase, p 96.1 0.026 5.7E-07 69.1 10.8 98 361-476 340-456 (720)
473 TIGR01846 type_I_sec_HlyB type 96.1 0.014 3E-07 71.2 8.5 30 354-383 476-507 (694)
474 PRK14737 gmk guanylate kinase; 96.1 0.0079 1.7E-07 61.5 5.4 25 359-383 4-28 (186)
475 PF02562 PhoH: PhoH-like prote 96.1 0.017 3.7E-07 60.1 7.9 23 361-383 21-43 (205)
476 PRK12337 2-phosphoglycerate ki 96.1 0.065 1.4E-06 62.0 13.2 97 465-571 360-457 (475)
477 PF09848 DUF2075: Uncharacteri 96.1 0.013 2.7E-07 65.7 7.5 23 361-383 3-25 (352)
478 COG4133 CcmA ABC-type transpor 96.1 0.027 5.8E-07 57.7 8.9 51 419-484 149-199 (209)
479 PF13479 AAA_24: AAA domain 96.1 0.025 5.4E-07 58.9 9.1 68 359-430 3-80 (213)
480 PHA02774 E1; Provisional 96.1 0.0082 1.8E-07 70.7 5.9 33 360-392 435-468 (613)
481 PRK13541 cytochrome c biogenes 96.1 0.05 1.1E-06 55.5 11.1 24 360-383 27-50 (195)
482 PRK14529 adenylate kinase; Pro 96.1 0.023 5.1E-07 59.8 8.8 34 362-397 3-36 (223)
483 COG2874 FlaH Predicted ATPases 96.1 0.035 7.6E-07 57.8 9.8 127 345-484 12-176 (235)
484 KOG0058 Peptide exporter, ABC 96.1 0.022 4.7E-07 68.2 9.4 31 351-381 484-516 (716)
485 TIGR02239 recomb_RAD51 DNA rep 96.1 0.017 3.7E-07 64.0 8.1 112 359-472 96-243 (316)
486 PLN03186 DNA repair protein RA 96.1 0.025 5.4E-07 63.4 9.4 111 361-473 125-271 (342)
487 PRK09544 znuC high-affinity zi 96.1 0.022 4.7E-07 60.9 8.6 23 361-383 32-54 (251)
488 PRK12726 flagellar biosynthesi 96.1 0.034 7.3E-07 62.9 10.4 61 331-394 180-244 (407)
489 PRK06581 DNA polymerase III su 96.0 0.14 3.1E-06 54.5 14.3 138 357-514 13-165 (263)
490 TIGR03819 heli_sec_ATPase heli 96.0 0.01 2.2E-07 66.3 6.2 69 359-427 178-262 (340)
491 PRK01184 hypothetical protein; 96.0 0.006 1.3E-07 61.5 3.8 33 361-396 3-35 (184)
492 COG1125 OpuBA ABC-type proline 96.0 0.0063 1.4E-07 64.8 4.0 33 349-381 15-49 (309)
493 TIGR02211 LolD_lipo_ex lipopro 96.0 0.038 8.2E-07 57.3 9.9 23 361-383 33-55 (221)
494 COG1122 CbiO ABC-type cobalt t 96.0 0.019 4E-07 61.1 7.6 24 360-383 31-54 (235)
495 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.0 0.029 6.2E-07 58.1 8.9 23 361-383 32-54 (218)
496 PRK13657 cyclic beta-1,2-gluca 96.0 0.016 3.4E-07 69.3 7.9 23 361-383 363-385 (588)
497 COG2805 PilT Tfp pilus assembl 96.0 0.029 6.2E-07 61.2 8.9 113 359-500 124-251 (353)
498 PRK10263 DNA translocase FtsK; 96.0 0.027 5.9E-07 71.4 10.0 75 420-508 1142-1218(1355)
499 PRK10790 putative multidrug tr 96.0 0.014 3.1E-07 69.7 7.4 31 353-383 359-391 (592)
500 PRK04182 cytidylate kinase; Pr 96.0 0.0068 1.5E-07 60.2 4.0 28 362-389 3-30 (180)
No 1
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-121 Score=1057.96 Aligned_cols=604 Identities=57% Similarity=0.895 Sum_probs=555.6
Q ss_pred CccccHHHHHHHHcCCCCccEEEEec-CeEEEEEEecCCCCCCccCCCCCCCCCCCCCCCCCceeEEEEcCChhHHHHHH
Q 047690 160 QQQISFQEFKNKLLEPGLVDHIVVSN-KSVAKVFVRSSPHNQTIEDDFHGPVSGTPSKGHGGQYKYYFNIGSVEAFEEKL 238 (811)
Q Consensus 160 ~~~i~~~~f~~~~l~~g~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 238 (811)
.++|+|++|+++|+++|.|.++++++ ..++++++..+.... ......+|+++++|+.|+++|
T Consensus 163 ~~ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~~~~~~~~-----------------~~~~~~~~~~i~~v~~F~~kl 225 (774)
T KOG0731|consen 163 WQEITWRDFKQKLLEKGEVGKLEVVNPYAVVRVELDRGRIPG-----------------DRLIQKVWFNIRSVDNFERKL 225 (774)
T ss_pred ceeeeHHHHHHHHhhccceeeEEeeccceeEEEEEecccccc-----------------ccceeeEEEEecccchHHHHH
Confidence 46899999999999999999999998 778888887653210 012345899999999999999
Q ss_pred HHHHHHcCCCCCCceeEEEecchhHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCcccccccccccccccc
Q 047690 239 EEAQETLGIDPHDFVPVTYVSEMVWYNELMRFAPTLLLLGTLMYMGRRMQGGLGVGGSGGKGARGIFNIGKAHVTKVDKN 318 (811)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 318 (811)
+.+|.+++++..+++||.|.....|...+..++|++++++.++|++|++.+ .+.++.+++.+...|+++++. ++++..
T Consensus 226 ~~a~~~l~~~~~~~~pV~~~~~~~~~~~~~~~~pti~~~~~l~~l~r~~~~-~~~~~~gg~~g~~~f~~~ks~-~k~~~~ 303 (774)
T KOG0731|consen 226 DEAQRNLGIDTVVRVPVTYISESLLDLILGLLLPTILLLGGLLYLSRRSEG-MGKGGPGGGLGPRLFGVSKSY-KKFKNE 303 (774)
T ss_pred HHHHHHhCCCceeEeeeEEeecchhhhhhhhhhHHHHHHHhHheeeeeccc-ccccCCccccCcceeeeccce-eeeccC
Confidence 999999999999999999988888888888899999999999999999875 433333333333678888887 777776
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
.+.+|+|+||+|+++||++|+|+|+||+||++|.++|+++|+|+||+||||||||+||||+|+|+++||+.+++++|+++
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 399 FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
++|.+++++|++|..|+.++||||||||||++++.|+.....+.++++++++||||.+||||..+.+|||+|+||+++.|
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~l 463 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDIL 463 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcccc
Confidence 99999999999999999999999999999999999863345578999999999999999999999999999999999999
Q ss_pred chhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccC
Q 047690 479 DKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVT 558 (811)
Q Consensus 479 DpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It 558 (811)
|+||+|||||||+|++++||..+|.+|++.|++..+++.+ +.++..+|.+|+||+|+||+|+||+|++.|+|++...|+
T Consensus 464 d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e-~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~ 542 (774)
T KOG0731|consen 464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDE-DVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIG 542 (774)
T ss_pred CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcc-hhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccc
Confidence 9999999999999999999999999999999999998733 333466999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhhHHHHhhhhcCCCeEEEEEeeCCCCcccceeccccccccccHHH
Q 047690 559 MEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQ 638 (811)
Q Consensus 559 ~ed~~~Al~rvi~g~e~~~~~l~~~e~~~va~hEaGhAvv~~~l~~~~~~~kvsI~prg~~~lG~~~~~p~e~~l~tk~~ 638 (811)
..||++|++|++.|++++...++.++++.+||||+|||+++|+|+|.+|+.||+|+| |. ++||++|.|.+++++|++|
T Consensus 543 ~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-Gq-alG~a~~~P~~~~l~sk~q 620 (774)
T KOG0731|consen 543 TKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQ-ALGYAQYLPTDDYLLSKEQ 620 (774)
T ss_pred hhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc-CC-ccceEEECCcccccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999 76 9999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHcC-CccCCccchHHHHHHHHHHHHHHhCCCCCcccccccCCCc-ccccCCCCcHHHHHHHHH
Q 047690 639 LFDMTCMTLGGRAAEQVLLG-KISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQRED-TFEMSKPYSSKTGAIIDA 716 (811)
Q Consensus 639 l~~~i~v~LgGRaAEel~fG-~~stGA~~DL~~AT~lA~~mV~~~GMs~~~g~~~~~~~~~-~~~~~~~~s~~t~~~id~ 716 (811)
|++||||+||||||||++|| ++||||++||++||++||+||++|||++++|+++++.... .+...+|||+.+++.||.
T Consensus 621 l~~rm~m~LGGRaAEev~fg~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~~~~~~p~s~~~~~~Id~ 700 (774)
T KOG0731|consen 621 LFDRMVMALGGRAAEEVVFGSEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPGDESFRKPYSEKTAQLIDT 700 (774)
T ss_pred HHHHHHHHhCcchhhheecCCccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcccccccccCccchhHHHHHHH
Confidence 99999999999999999997 8999999999999999999999999999999999965433 456789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHcCCCCCCccccchHHhhhccccc
Q 047690 717 EVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGERPFKSSELTNYDRFKQGFEEE 785 (811)
Q Consensus 717 eV~~il~~ay~ra~~lL~~~r~~l~~lA~~LlekEtL~~~ei~~il~~~~~~~~~~~~~~~~~~~~~~~ 785 (811)
||++|++.||++|.++|++|++.++.||+.||+||+|+++|+.++++++|+...+..+|.+++.+++.+
T Consensus 701 ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 769 (774)
T KOG0731|consen 701 EVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMPEKNVIVEQKIGLEPE 769 (774)
T ss_pred HHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCcccccchhhhhccccccc
Confidence 999999999999999999999999999999999999999999999999999998889999999884443
No 2
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-112 Score=970.14 Aligned_cols=566 Identities=49% Similarity=0.815 Sum_probs=508.1
Q ss_pred CccccHHHHHHHHcCCCCccEEEEecCe-EEEEEEecCCCCCCccCCCCCCCCCCCCCCCCCceeEEEEcCChhHHHHHH
Q 047690 160 QQQISFQEFKNKLLEPGLVDHIVVSNKS-VAKVFVRSSPHNQTIEDDFHGPVSGTPSKGHGGQYKYYFNIGSVEAFEEKL 238 (811)
Q Consensus 160 ~~~i~~~~f~~~~l~~g~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 238 (811)
..+++|++|.. ++..+.|+++.+.... .+..+...+ ....++.+.+ .+..+|
T Consensus 22 ~~~~~~~~f~~-~~~~~~v~~~~~~~~~~~v~~~~~~~-----------------------~~~~~~~~~~---~~~~~~ 74 (596)
T COG0465 22 SKQVTYSQFIQ-LVSGGKVSSVSIKGDSKTVNLKLKDG-----------------------SKNTVYLPKG---VNDPNL 74 (596)
T ss_pred cccccHHHHHH-HHhcCCceEEEEcCCceEEEEEecCC-----------------------cceEEeecCC---cccHHH
Confidence 46899999997 5799999999998754 444443322 1112344433 223446
Q ss_pred HHHHHHcCCCCCCceeEEEecchhHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCcccccccccccccccc
Q 047690 239 EEAQETLGIDPHDFVPVTYVSEMVWYNELMRFAPTLLLLGTLMYMGRRMQGGLGVGGSGGKGARGIFNIGKAHVTKVDKN 318 (811)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 318 (811)
...+...+++.....| .....|+..+++++|++++++++||+++|+..++ +|++ .|++++++++.+...
T Consensus 75 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lp~il~~~~~~~~~~r~~~~g-------~g~~-~~~~gkskak~~~~~ 143 (596)
T COG0465 75 VSFLDSNNITESGFIP---EDNSLLASLLSTWLPFILLIGLGWFFFRRQAQGG-------GGGG-AFSFGKSKAKLYLED 143 (596)
T ss_pred HHHHHhcCCcccccCC---CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCCc-ccCCChHHHHHhccc
Confidence 6666677764444444 3344567777889999999998877776653221 1112 899999999988763
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
..+++|.||+|++++|+++.|+|++|++|.+|..+|+++|+|+||+||||||||+||||+|+|+++||+++|+|+|+++
T Consensus 144 -~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 -QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred -ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 399 FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
|+|++++++|++|.+|++++||||||||||+++++|+.+ ..++++++++++||||++||||..+.+|+||++||+||.|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g-~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVl 301 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVL 301 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCC-CCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccc
Confidence 999999999999999999999999999999999999876 6788999999999999999999999999999999999999
Q ss_pred chhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccC
Q 047690 479 DKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVT 558 (811)
Q Consensus 479 DpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It 558 (811)
||||+|||||||+|.++.||..+|++|++.|+++.+++.+++. ..+|+.|+||+|+||+|++|+|++.|+|+++..|+
T Consensus 302 D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl--~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~ 379 (596)
T COG0465 302 DPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL--KKIARGTPGFSGADLANLLNEAALLAARRNKKEIT 379 (596)
T ss_pred hHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH--HHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEe
Confidence 9999999999999999999999999999999999999988876 67999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhhHHHHhhhhcCCCeEEEEEeeCCCCcccceeccccc-cccccHH
Q 047690 559 MEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNE-NLLLTKE 637 (811)
Q Consensus 559 ~ed~~~Al~rvi~g~e~~~~~l~~~e~~~va~hEaGhAvv~~~l~~~~~~~kvsI~prg~~~lG~~~~~p~e-~~l~tk~ 637 (811)
+.||++|+++++.|+++++..+++.+++.+||||+|||+++++++++++++|+||+|||. ++|||+++|++ .+++|++
T Consensus 380 ~~~i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~-alG~t~~~Pe~d~~l~sk~ 458 (596)
T COG0465 380 MRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGR-ALGYTLFLPEEDKYLMSKE 458 (596)
T ss_pred ccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCCcccceeeeccCch-hhcchhcCCccccccccHH
Confidence 999999999999999999989999999999999999999999999999999999999995 99999999996 8999999
Q ss_pred HHHHHHHHhhhhHHHHHHHcC-CccCCccchHHHHHHHHHHHHHHhCCCCCcccccccCCCcccc----cCCCCcHHHHH
Q 047690 638 QLFDMTCMTLGGRAAEQVLLG-KISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQREDTFE----MSKPYSSKTGA 712 (811)
Q Consensus 638 ~l~~~i~v~LgGRaAEel~fG-~~stGA~~DL~~AT~lA~~mV~~~GMs~~~g~~~~~~~~~~~~----~~~~~s~~t~~ 712 (811)
+++++|+++||||||||++|| ++||||++||++||++|+.||++|||++++|++.|...++.|. ..+.||++|++
T Consensus 459 ~l~~~i~~~lgGRaAEel~~g~e~ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~ 538 (596)
T COG0465 459 ELLDRIDVLLGGRAAEELIFGYEITTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKNYSEETAQ 538 (596)
T ss_pred HHHHHHHHHhCCcHhhhhhhcccccccchhhHHHHHHHHHHhhhhcCcchhhCceehhhcccccccccccccCccHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999988665222 34569999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHcCCCCC
Q 047690 713 IIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGERPFK 768 (811)
Q Consensus 713 ~id~eV~~il~~ay~ra~~lL~~~r~~l~~lA~~LlekEtL~~~ei~~il~~~~~~ 768 (811)
.||.||++++++||++|++||.+|++.++.+++.|+|+|||++++|.+|+..++.+
T Consensus 539 ~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti~~~~i~~i~~~~~~~ 594 (596)
T COG0465 539 EIDREVKDIIDEAYERAKELLNENKDALETLAEMLLEKETIDAEEIKDILAGRKLP 594 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCHHHHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999999999876554
No 3
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-108 Score=901.75 Aligned_cols=442 Identities=48% Similarity=0.798 Sum_probs=420.7
Q ss_pred cccccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeec
Q 047690 313 TKVDKNAKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISG 392 (811)
Q Consensus 313 ~~~~~~~~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~ 392 (811)
..+++....+++|+||-|++|||++|.|+|+||++|++|..+|.++|+||||+||||||||+||||+|+|+++||++.++
T Consensus 291 ~ev~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sG 370 (752)
T KOG0734|consen 291 SEVDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASG 370 (752)
T ss_pred cccChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccc
Confidence 34455556789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecC
Q 047690 393 SDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGT 472 (811)
Q Consensus 393 s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaT 472 (811)
++|-++|+|++++++|++|..|++++||||||||||+++.+|... ......+++||||.+||||..+.+||||+||
T Consensus 371 SEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~----~~~y~kqTlNQLLvEmDGF~qNeGiIvigAT 446 (752)
T KOG0734|consen 371 SEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS----DQHYAKQTLNQLLVEMDGFKQNEGIIVIGAT 446 (752)
T ss_pred cchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc----HHHHHHHHHHHHHHHhcCcCcCCceEEEecc
Confidence 999999999999999999999999999999999999999888532 2237899999999999999999999999999
Q ss_pred CCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 047690 473 NRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARG 552 (811)
Q Consensus 473 N~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~ 552 (811)
|.|+.||+||.||||||++|.|+.||...|.+||+.|++++.++.++|. ..||+-|+||+||||+|++|.||+.|+..
T Consensus 447 Nfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~--~iiARGT~GFsGAdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 447 NFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDP--KIIARGTPGFSGADLANLVNQAALKAAVD 524 (752)
T ss_pred CChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCH--hHhccCCCCCchHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999988886 78999999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhhHHHHhhhhcCCCeEEEEEeeCCCCcccceecccc-cc
Q 047690 553 ENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPN-EN 631 (811)
Q Consensus 553 ~~~~It~ed~~~Al~rvi~g~e~~~~~l~~~e~~~va~hEaGhAvv~~~l~~~~~~~kvsI~prg~~~lG~~~~~p~-e~ 631 (811)
+...|+|.|++.|-+++++|.+++...++++.++++||||+|||||+.+.+.+.|++|+||.|||. +||++.++|+ |+
T Consensus 525 ga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~-sLG~t~~LPe~D~ 603 (752)
T KOG0734|consen 525 GAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGP-SLGHTSQLPEKDR 603 (752)
T ss_pred CcccccHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCc-cccceeecCccch
Confidence 999999999999999999999999999999999999999999999999999999999999999998 9999999998 68
Q ss_pred ccccHHHHHHHHHHhhhhHHHHHHHcC--CccCCccchHHHHHHHHHHHHHHhCCCCCcccccccCCCcccccCCCCcHH
Q 047690 632 LLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQREDTFEMSKPYSSK 709 (811)
Q Consensus 632 ~l~tk~~l~~~i~v~LgGRaAEel~fG--~~stGA~~DL~~AT~lA~~mV~~~GMs~~~g~~~~~~~~~~~~~~~~~s~~ 709 (811)
+..||.|+++++.||||||+|||++|| .|||||++||++||++|++||+.||||+++|++++....+ ....+.+
T Consensus 604 ~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~----~~s~~~~ 679 (752)
T KOG0734|consen 604 YSITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDN----SSSLSPR 679 (752)
T ss_pred hhHHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCC----CCCCCch
Confidence 999999999999999999999999999 5999999999999999999999999999999998876543 3456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHcCC
Q 047690 710 TGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGER 765 (811)
Q Consensus 710 t~~~id~eV~~il~~ay~ra~~lL~~~r~~l~~lA~~LlekEtL~~~ei~~il~~~ 765 (811)
|...||.||+++|+++|+||+.||+.|...+++||++||++|||+++||+++|...
T Consensus 680 t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~ 735 (752)
T KOG0734|consen 680 TQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGK 735 (752)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999543
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=5.2e-94 Score=840.71 Aligned_cols=567 Identities=42% Similarity=0.692 Sum_probs=477.0
Q ss_pred CccccHHHHHHHHcCCCCccEEEEecCeEEEEEEecCCCCCCccCCCCCCCCCCCCCCCCCceeEEEEcC-ChhHHHHHH
Q 047690 160 QQQISFQEFKNKLLEPGLVDHIVVSNKSVAKVFVRSSPHNQTIEDDFHGPVSGTPSKGHGGQYKYYFNIG-SVEAFEEKL 238 (811)
Q Consensus 160 ~~~i~~~~f~~~~l~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 238 (811)
.++++|++|++ +++.|.|++|.+.++.+.......... . ..... .|...++ ..+.+.+.|
T Consensus 49 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------~--~~~~~-~~~~~~~~~~~~~~~~l 109 (638)
T CHL00176 49 SSRMTYGRFLE-YLDMGWIKKVDLYDNGRTAIVEASSPE---------------L--GNRPQ-RIRVELPVGASELIQKL 109 (638)
T ss_pred CceecHHHHHH-HHHcCCeeEEEEecCceEEEEeecccc---------------C--CCcce-eEEEeCCCCCHHHHHHH
Confidence 45799999997 589999999999876543221111100 0 00011 1333333 123333444
Q ss_pred HHHHHHcCCCCCCceeEEEecchhHHHHHHHH-HHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCccccccccccccccc
Q 047690 239 EEAQETLGIDPHDFVPVTYVSEMVWYNELMRF-APTLLLLGTLMYMGRRMQGGLGVGGSGGKGARGIFNIGKAHVTKVDK 317 (811)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 317 (811)
+ +.+++.....+ .....|...+.++ +|+++++++||++.+++..+. +++..++++++++++....
T Consensus 110 ~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 175 (638)
T CHL00176 110 K----EANIDFDAHPP---VLKSNIVTILSNLLLPLILIGVLWFFFQRSSNFKG-------GPGQNLMNFGKSKARFQME 175 (638)
T ss_pred H----HcCCcEEecCC---CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCcccccccchhHHHhhcc
Confidence 3 45654321111 1123466666554 688888777777666543211 1112467888888665443
Q ss_pred ccCCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 318 NAKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 318 ~~~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
....++|+||+|++++|+++.+++.++++++.|..+|.++|+|+||+||||||||++|+++|+++++||+.+++++|.+
T Consensus 176 -~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 -ADTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred -cCCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
+++|.+..+++.+|..|+..+||||||||||+++..|+.+ ..+.+++.++++++||.+||++..+.+++||++||+++.
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~-~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~ 333 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAG-IGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDI 333 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCC-CCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHh
Confidence 9999999999999999999999999999999999877543 345678889999999999999988889999999999999
Q ss_pred cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCcc
Q 047690 478 LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQV 557 (811)
Q Consensus 478 LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~I 557 (811)
||++++||||||++|.|++|+.++|.+||+.|+++..+..+. ++..+|..|+||+|+||+++|++|++.|++++...|
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~--~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~I 411 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDV--SLELIARRTPGFSGADLANLLNEAAILTARRKKATI 411 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhH--HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999986655444 458899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhhHHHHhhhhcCCCeEEEEEeeCCCCcccceecccc-ccccccH
Q 047690 558 TMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPN-ENLLLTK 636 (811)
Q Consensus 558 t~ed~~~Al~rvi~g~e~~~~~l~~~e~~~va~hEaGhAvv~~~l~~~~~~~kvsI~prg~~~lG~~~~~p~-e~~l~tk 636 (811)
+++||+.|+++++.|.+++. ..++.+++++||||+||||++|++++.+++++|||+|||. ++||+++.|. +.+++||
T Consensus 412 t~~dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~-~~G~~~~~p~~~~~~~t~ 489 (638)
T CHL00176 412 TMKEIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQ-AKGLTWFTPEEDQSLVSR 489 (638)
T ss_pred CHHHHHHHHHHHHhhhccCc-cccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeecCC-CCCceEecCCcccccccH
Confidence 99999999999999988654 5678889999999999999999999999999999999997 9999999996 5789999
Q ss_pred HHHHHHHHHhhhhHHHHHHHcC--CccCCccchHHHHHHHHHHHHHHhCCCCCcccccccCCCc--c-----cccCCCCc
Q 047690 637 EQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQRED--T-----FEMSKPYS 707 (811)
Q Consensus 637 ~~l~~~i~v~LgGRaAEel~fG--~~stGA~~DL~~AT~lA~~mV~~~GMs~~~g~~~~~~~~~--~-----~~~~~~~s 707 (811)
++|+++|+++|||||||+++|| ++||||++||++||+||+.||++||||+ +|++++....+ . +...+.||
T Consensus 490 ~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~~s 568 (638)
T CHL00176 490 SQILARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSS-IGPISLESNNSTDPFLGRFMQRNSEYS 568 (638)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCc-CCceeecCCCCcccccccccccccCcC
Confidence 9999999999999999999999 5999999999999999999999999995 99999865432 1 22346799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHcCCC
Q 047690 708 SKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGERP 766 (811)
Q Consensus 708 ~~t~~~id~eV~~il~~ay~ra~~lL~~~r~~l~~lA~~LlekEtL~~~ei~~il~~~~ 766 (811)
++|++.||.||+++|++||++|++||++||+.|++||++|+|+|+|+++||++|++..+
T Consensus 569 ~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~~ 627 (638)
T CHL00176 569 EEIADKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSYT 627 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999997654
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=2.2e-91 Score=825.25 Aligned_cols=560 Identities=42% Similarity=0.748 Sum_probs=479.8
Q ss_pred CCccccHHHHHHHHcCCCCccEEEEecCeEEEEEEecCCCCCCccCCCCCCCCCCCCCCCCCceeEEEEcCChhHHHHHH
Q 047690 159 EQQQISFQEFKNKLLEPGLVDHIVVSNKSVAKVFVRSSPHNQTIEDDFHGPVSGTPSKGHGGQYKYYFNIGSVEAFEEKL 238 (811)
Q Consensus 159 ~~~~i~~~~f~~~~l~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 238 (811)
..+.++|++|.+. +.+|.|.++.+....+ +.....+ ..+..|..+. .+.+..++
T Consensus 28 ~~~~~~~~~~~~~-~~~~~v~Ev~~~~~tI-K~~~~e~-----------------------~~~~~~~~~~-~~~l~~~l 81 (644)
T PRK10733 28 NGRKVDYSTFLQE-VNQDQVREARINGREI-NVTKKDS-----------------------NRYTTYIPVN-DPKLLDNL 81 (644)
T ss_pred CcccCCHHHHHHH-HHcCCeEEEEEeCCEE-EEEEcCC-----------------------ceEEEeCCCC-CHHHHHHH
Confidence 3568999999975 7999999999876543 2221111 1111121111 12222222
Q ss_pred HHHHHHcCCCCCCceeEEEec--chhH-HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCccccccccccccc
Q 047690 239 EEAQETLGIDPHDFVPVTYVS--EMVW-YNELMRFAPTLLLLGTLMYMGRRMQGGLGVGGSGGKGARGIFNIGKAHVTKV 315 (811)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 315 (811)
. +.++ .+.... ...| ...+..++|+++++|+++++.++|++|+ +.+++.+++......
T Consensus 82 ~----~~~v------~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~g~mt~G~---------~~~l~af~~~~~~~~ 142 (644)
T PRK10733 82 L----TKNV------KVVGEPPEEPSLLASIFISWFPMLLLIGVWIFFMRQMQGGG---------GKGAMSFGKSKARML 142 (644)
T ss_pred H----HcCC------eEEecCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC---------CceeEEecccccccc
Confidence 2 2333 222221 1223 3334456788888999999988875421 134677777766655
Q ss_pred ccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhh
Q 047690 316 DKNAKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDF 395 (811)
Q Consensus 316 ~~~~~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~ 395 (811)
.+ .....+|+|+.|++.+++++.+++.+++++..|..++..+|+|+||+||||||||++|+++|+++++||+.++++++
T Consensus 143 ~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~ 221 (644)
T PRK10733 143 TE-DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 221 (644)
T ss_pred Cc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHh
Confidence 54 45678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCC
Q 047690 396 MEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRP 475 (811)
Q Consensus 396 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~p 475 (811)
.+.|++.+..+++.+|..|+..+||||||||||+++.+|+.+ ..+.+.+..++++++|.+||++..+.+++||+|||+|
T Consensus 222 ~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~-~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p 300 (644)
T PRK10733 222 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG-LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP 300 (644)
T ss_pred HHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCC-CCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCCh
Confidence 999999999999999999999999999999999999887643 3455778889999999999999999999999999999
Q ss_pred cccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 047690 476 DILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENS 555 (811)
Q Consensus 476 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~ 555 (811)
+.||++++||||||++|.|++|+.++|.+||+.|+++..+..+.+. ..+|+.|+||||+||.++|++|++.|+++++.
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~--~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~ 378 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDA--AIIARGTPGFSGADLANLVNEAALFAARGNKR 378 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCH--HHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999887766654 78999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhhHHHHhhhhcCCCeEEEEEeeCCCCcccceeccccc-cccc
Q 047690 556 QVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNE-NLLL 634 (811)
Q Consensus 556 ~It~ed~~~Al~rvi~g~e~~~~~l~~~e~~~va~hEaGhAvv~~~l~~~~~~~kvsI~prg~~~lG~~~~~p~e-~~l~ 634 (811)
.|+++||+.|++++..|+++....+++.+++.+||||+||||++|++++.+++++|+|+|||. ++||+++.|.+ .+++
T Consensus 379 ~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~-~~g~~~~~~~~~~~~~ 457 (644)
T PRK10733 379 VVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGR-ALGVTFFLPEGDAISA 457 (644)
T ss_pred cccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCC-CcceeEECCCcccccc
Confidence 999999999999999998887778889999999999999999999999999999999999997 89999999975 5678
Q ss_pred cHHHHHHHHHHhhhhHHHHHHHcC--CccCCccchHHHHHHHHHHHHHHhCCCCCcccccccCCCcc------cccCCCC
Q 047690 635 TKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQREDT------FEMSKPY 706 (811)
Q Consensus 635 tk~~l~~~i~v~LgGRaAEel~fG--~~stGA~~DL~~AT~lA~~mV~~~GMs~~~g~~~~~~~~~~------~~~~~~~ 706 (811)
||++|+++|+++|||||||+++|| ++||||++||++||+||+.||++||||+++|++.|...+.. +...++|
T Consensus 458 ~~~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~ 537 (644)
T PRK10733 458 SRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHM 537 (644)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhccccccccccccccccccc
Confidence 999999999999999999999998 69999999999999999999999999999999998654332 1235789
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHcCCCCC
Q 047690 707 SSKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGERPFK 768 (811)
Q Consensus 707 s~~t~~~id~eV~~il~~ay~ra~~lL~~~r~~l~~lA~~LlekEtL~~~ei~~il~~~~~~ 768 (811)
|++|++.||.||+++|++||++|++||++||+.|++||++|+|+|||+++||++|+...+..
T Consensus 538 s~~~~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~~~~ 599 (644)
T PRK10733 538 SDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARRDVR 599 (644)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999876443
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=6e-86 Score=760.21 Aligned_cols=486 Identities=55% Similarity=0.909 Sum_probs=443.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhhccCCCCCCCCCCCCCCcccccccccccccccccCCCccccccccchHhHHHHHHH
Q 047690 263 WYNELMRFAP-TLLLLGTLMYMGRRMQGGLGVGGSGGKGARGIFNIGKAHVTKVDKNAKNKVYFRDVAGCDEAKQEIMEF 341 (811)
Q Consensus 263 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~dV~G~eeak~eL~e~ 341 (811)
|..++.+++| +++++++|+++.+++.|+ +++.+.+++++++.+.. ..+.++|+||+|++++|+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~~di~g~~~~k~~l~~~ 70 (495)
T TIGR01241 2 LLGFLFSLLPPILLLVGVWFFFRRQMQGG----------GGRAFSFGKSKAKLLNE-EKPKVTFKDVAGIDEAKEELMEI 70 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC----------CCCCcCCCCCccccccC-CCCCCCHHHhCCHHHHHHHHHHH
Confidence 5666666655 666777788787777532 13456788888887765 46899999999999999999999
Q ss_pred HHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCchhHHHHHHHHHHhcCCeE
Q 047690 342 VHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSI 421 (811)
Q Consensus 342 v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP~I 421 (811)
+.++++++.|..+|.++|+|+||+||||||||++|+++|+++++||+.+++++|.+.++|.+.++++.+|+.|+.++|||
T Consensus 71 ~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~I 150 (495)
T TIGR01241 71 VDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCI 150 (495)
T ss_pred HHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHH
Q 047690 422 IFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKG 501 (811)
Q Consensus 422 LfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~e 501 (811)
|||||||.++.+++.+ ..+.+++..+++++||.+||++..+.+++||+|||+|+.|||+++||||||+.|+++.|+.++
T Consensus 151 l~iDEid~l~~~r~~~-~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~ 229 (495)
T TIGR01241 151 IFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKG 229 (495)
T ss_pred EEEechhhhhhccccC-cCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHH
Confidence 9999999999877543 334567788999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCccccchhhh
Q 047690 502 RDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVIS 581 (811)
Q Consensus 502 R~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rvi~g~e~~~~~l~ 581 (811)
|.+||+.++++..+..+.+ +..+|..|.|||++||.++|++|++.|+++++..|+.+||+.|++++..|++.....++
T Consensus 230 R~~il~~~l~~~~~~~~~~--l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~ 307 (495)
T TIGR01241 230 REEILKVHAKNKKLAPDVD--LKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVIS 307 (495)
T ss_pred HHHHHHHHHhcCCCCcchh--HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccccccccccc
Confidence 9999999999876654444 47899999999999999999999999999999999999999999999999887777789
Q ss_pred hhhhhhhhhhhhhhHHHHhhhhcCCCeEEEEEeeCCCCcccceeccccc-cccccHHHHHHHHHHhhhhHHHHHHHcCCc
Q 047690 582 KLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNE-NLLLTKEQLFDMTCMTLGGRAAEQVLLGKI 660 (811)
Q Consensus 582 ~~e~~~va~hEaGhAvv~~~l~~~~~~~kvsI~prg~~~lG~~~~~p~e-~~l~tk~~l~~~i~v~LgGRaAEel~fG~~ 660 (811)
+.+++++||||+||||++|++++..++.+++|.|||. ++||+++.|.+ ....|+++++++|+|+|||||||+++||++
T Consensus 308 ~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~-~~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAE~~~~G~~ 386 (495)
T TIGR01241 308 EKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPRGQ-ALGYTQFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFGEV 386 (495)
T ss_pred HHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeecCC-ccceEEecCccccccCCHHHHHHHHHHHhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999998 99999998875 678999999999999999999999999999
Q ss_pred cCCccchHHHHHHHHHHHHHHhCCCCCcccccccCCCc------ccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047690 661 STGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQRED------TFEMSKPYSSKTGAIIDAEVREWVGKAYVRTVQLIE 734 (811)
Q Consensus 661 stGA~~DL~~AT~lA~~mV~~~GMs~~~g~~~~~~~~~------~~~~~~~~s~~t~~~id~eV~~il~~ay~ra~~lL~ 734 (811)
|+||++||++||++|+.||.+|||++++|++++..... .+...++||+.++..||.+|+++|++||++|++||+
T Consensus 387 s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~ 466 (495)
T TIGR01241 387 TTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQILT 466 (495)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876432 123457899999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhcccCHHHHHHHHc
Q 047690 735 EHKEHVAQIAELLLEKEVLHQDDLLRVLG 763 (811)
Q Consensus 735 ~~r~~l~~lA~~LlekEtL~~~ei~~il~ 763 (811)
+||+.|++||++|+++|+|+++||++|++
T Consensus 467 ~~~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 467 ENRDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred HhHHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 99999999999999999999999999985
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-57 Score=485.52 Aligned_cols=253 Identities=48% Similarity=0.792 Sum_probs=243.7
Q ss_pred ccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 318 NAKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 318 ~~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
...+.++|+||.|+++++++|+|.|.. |++|+.|..+|+++|+|||||||||||||+||||+|++.++.|+.+.+|+|+
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 356899999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 397 EMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 397 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
.+|+|+++..+|++|+.|+.++||||||||||+++.+|..++ .+++.+.++|+.+||.+||||.+..+|-||+|||++|
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~-t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSG-TSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCC-CCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 999999999999999999999999999999999999997654 4678899999999999999999999999999999999
Q ss_pred ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCc
Q 047690 477 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQ 556 (811)
Q Consensus 477 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~ 556 (811)
.|||||+|||||||.|+||+||.++|.+||+.|.++.++..++++ +.+|+.|+|+|||||+++|.||.+.|.|+.+..
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~--e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~ 379 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL--ELLARLTEGFSGADLKAICTEAGMFAIRERRDE 379 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH--HHHHHhcCCCchHHHHHHHHHHhHHHHHhccCe
Confidence 999999999999999999999999999999999999999998886 889999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHhcCc
Q 047690 557 VTMEHFEAAIDRVIGGL 573 (811)
Q Consensus 557 It~ed~~~Al~rvi~g~ 573 (811)
||++||..|+++++...
T Consensus 380 Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 380 VTMEDFLKAVEKVVKKK 396 (406)
T ss_pred ecHHHHHHHHHHHHhcc
Confidence 99999999999997654
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=7.3e-57 Score=549.79 Aligned_cols=316 Identities=21% Similarity=0.282 Sum_probs=271.9
Q ss_pred hhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhh-------------------------------
Q 047690 351 YEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF------------------------------- 399 (811)
Q Consensus 351 ~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~------------------------------- 399 (811)
+..+|+++|+||||+||||||||+||||+|+++++||+.|++++|++.+
T Consensus 1622 slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1622 SLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 3577999999999999999999999999999999999999999998643
Q ss_pred ------------hcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC---CCC
Q 047690 400 ------------VGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG---TTA 464 (811)
Q Consensus 400 ------------vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~---~~~ 464 (811)
++++..+++.+|+.|++++||||||||||+++.+. ....++++|+.+||+.. ...
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d----------s~~ltL~qLLneLDg~~~~~s~~ 1771 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE----------SNYLSLGLLVNSLSRDCERCSTR 1771 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc----------cceehHHHHHHHhccccccCCCC
Confidence 12233458999999999999999999999997542 22356899999999874 456
Q ss_pred cEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHh--hccCCCCCchhhhHHHhhCCCCcHHHHHHHH
Q 047690 465 GVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLK--KIKLDHEPSYYSQRLAALTPGFAGADIANVC 542 (811)
Q Consensus 465 ~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~--~~~l~~~~d~~l~~LA~~t~GfSgaDL~~Lv 542 (811)
+|+||||||+|+.|||||+||||||++|.|+.|+..+|++++..++. ...+..+. .++..+|+.|+|||||||++||
T Consensus 1772 ~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~-vdl~~LA~~T~GfSGADLanLv 1850 (2281)
T CHL00206 1772 NILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKM-FHTNGFGSITMGSNARDLVALT 1850 (2281)
T ss_pred CEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCccc-ccHHHHHHhCCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999986543 34444322 2358899999999999999999
Q ss_pred HHHHHHHHHcCCCccCHHHHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhhHHHHhhhhcCCCeEEEEEee-----CC
Q 047690 543 NEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVP-----RG 617 (811)
Q Consensus 543 neAal~Aar~~~~~It~ed~~~Al~rvi~g~e~~~~~l~~~e~~~va~hEaGhAvv~~~l~~~~~~~kvsI~p-----rg 617 (811)
|||++.|+++++..|++++|+.|++|++.|++... .+..++ .+++||+|||||++++.+.+|+++|||+| ++
T Consensus 1851 NEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~--~~~~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~ 1927 (2281)
T CHL00206 1851 NEALSISITQKKSIIDTNTIRSALHRQTWDLRSQV--RSVQDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKE 1927 (2281)
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhcc--cCcchh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCccccC
Confidence 99999999999999999999999999999987543 333333 37999999999999999999999999964 33
Q ss_pred CCcccceeccccccccccHHHHHHHHHHhhhhHHHHHHHcCCccCCccchHHHHHHHHHHHHHHhCCCCC-----ccccc
Q 047690 618 TAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSDK-----VGLLS 692 (811)
Q Consensus 618 ~~~lG~~~~~p~e~~l~tk~~l~~~i~v~LgGRaAEel~fG~~stGA~~DL~~AT~lA~~mV~~~GMs~~-----~g~~~ 692 (811)
..++||++|+|.+ ..+++.+++.+|++||||||||+++|...+ .|+.||+.|||.+. .|++.
T Consensus 1928 ~~~yl~~wyle~~-~~mkk~tiL~~Il~cLAGraAedlwf~~~~------------~~~n~It~yg~vEnD~~La~glLe 1994 (2281)
T CHL00206 1928 GDSYLYKWYFELG-TSMKKLTILLYLLSCSAGSVAQDLWSLPGP------------DEKNGITSYGLVENDSDLVHGLLE 1994 (2281)
T ss_pred cccceeEeecCCc-ccCCHHHHHHHHHHHhhhhhhhhhccCcch------------hhhcCcccccchhhhhHHhHhHHH
Confidence 5578999999987 889999999999999999999999997655 57899999999998 56654
Q ss_pred c
Q 047690 693 F 693 (811)
Q Consensus 693 ~ 693 (811)
+
T Consensus 1995 ~ 1995 (2281)
T CHL00206 1995 V 1995 (2281)
T ss_pred h
Confidence 3
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-50 Score=451.02 Aligned_cols=246 Identities=45% Similarity=0.766 Sum_probs=232.8
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
+-++++|+||.|++++|.+|++.|.+ +++|+.|.++|..+|+|||||||||||||++|||+|++++.+|++|.+.++.+
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 45789999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
+|+|++++.++++|.+|++.+|||||+||||+++..|+.+. ..-..++++|||+||||+....+|+||||||+|+.
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~----~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ 582 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS----SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM 582 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc----cchHHHHHHHHHHHcccccccCcEEEEeccCChhh
Confidence 99999999999999999999999999999999999986321 25568899999999999999999999999999999
Q ss_pred cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcC--CC
Q 047690 478 LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGE--NS 555 (811)
Q Consensus 478 LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~--~~ 555 (811)
||+||+||||||+.|+|++||.+.|.+||+.++++.++..++++ +.||..|.|||||||.++|++|++.|.++. ..
T Consensus 583 ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl--~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~ 660 (693)
T KOG0730|consen 583 IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDL--EELAQATEGYSGAEIVAVCQEAALLALRESIEAT 660 (693)
T ss_pred cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccH--HHHHHHhccCChHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999988775 899999999999999999999999999875 45
Q ss_pred ccCHHHHHHHHHHHh
Q 047690 556 QVTMEHFEAAIDRVI 570 (811)
Q Consensus 556 ~It~ed~~~Al~rvi 570 (811)
.|+.+||++|+..+.
T Consensus 661 ~i~~~hf~~al~~~r 675 (693)
T KOG0730|consen 661 EITWQHFEEALKAVR 675 (693)
T ss_pred cccHHHHHHHHHhhc
Confidence 799999999998653
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-48 Score=431.64 Aligned_cols=249 Identities=40% Similarity=0.669 Sum_probs=227.6
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
+-++|+|+||.|+++++.+|+..+.+ +++|+.|+.+|...|.|||||||||||||+||||+|+|++.+|++|.+.++++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 34789999999999999999987776 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
+|+|+++..+|.+|+.|+.++|||||+||||+|+++|+.++ .....+++||||+||||...+.+|.||||||+||.
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~----s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG----SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC----chhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 99999999999999999999999999999999999997543 45567899999999999999999999999999999
Q ss_pred cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHh--hccCCCCCchhhhHHHhhCC--CCcHHHHHHHHHHHHHHHHHcC
Q 047690 478 LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLK--KIKLDHEPSYYSQRLAALTP--GFAGADIANVCNEAALIAARGE 553 (811)
Q Consensus 478 LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~--~~~l~~~~d~~l~~LA~~t~--GfSgaDL~~LvneAal~Aar~~ 553 (811)
+|||++||||||+.++|++|+.++|.+||+.+++ +..++.+++ ++.||+.+. |||||||+.||++|.+.|.++.
T Consensus 660 IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVd--l~eia~~~~c~gftGADLaaLvreAsi~AL~~~ 737 (802)
T KOG0733|consen 660 IDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVD--LDEIARNTKCEGFTGADLAALVREASILALRES 737 (802)
T ss_pred cchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccC--HHHHhhcccccCCchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 455555555 589999887 9999999999999999988751
Q ss_pred ----------------CCccCHHHHHHHHHHHhcCc
Q 047690 554 ----------------NSQVTMEHFEAAIDRVIGGL 573 (811)
Q Consensus 554 ----------------~~~It~ed~~~Al~rvi~g~ 573 (811)
...+++.||++|+.++....
T Consensus 738 ~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 738 LFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred HhhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 11367889999999875543
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-45 Score=408.37 Aligned_cols=228 Identities=42% Similarity=0.742 Sum_probs=214.1
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
+..+++|+||.|++....+|.+++..+++|+.|..+|..+|+||||+||||||||+||+|+|+++++||+.|++.++++.
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCC----CcEEEEecCCC
Q 047690 399 FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTT----AGVVVIAGTNR 474 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~----~~VIVIaaTN~ 474 (811)
+.|++++++|++|.+|+.++||||||||||+++++|.. ++.+-.++++.|||..||++... .+|+||+|||+
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR 338 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR 338 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC
Confidence 99999999999999999999999999999999998863 33444467899999999998654 67999999999
Q ss_pred CcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 047690 475 PDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARG 552 (811)
Q Consensus 475 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~ 552 (811)
||.|||+|+|+||||+.|.+..|+..+|.+||+..++++.++.+.++ .+||.+|+||.||||..||.+|+..|.++
T Consensus 339 PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~--~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 339 PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDF--KQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCH--HHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988886665 89999999999999999999999999876
No 12
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-45 Score=375.05 Aligned_cols=256 Identities=41% Similarity=0.729 Sum_probs=242.7
Q ss_pred ccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 318 NAKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 318 ~~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
+.++.++++||.||.+.++.|+|+|+. |.+|++|..+|+.+|+|||||||||||||++|||+|+..+.-|+.+-+|+++
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 457899999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 397 EMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 397 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
.+|+|+++..+|++|+.|+....||||+||||+++..|-.++. +++.+.++++..|+.++|||.++.+|-|+.+||+|+
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~-ggdnevqrtmleli~qldgfdprgnikvlmatnrpd 327 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGA-GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPD 327 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCC-CCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCC
Confidence 9999999999999999999999999999999999998865543 567788999999999999999999999999999999
Q ss_pred ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCc
Q 047690 477 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQ 556 (811)
Q Consensus 477 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~ 556 (811)
.|||||+||||+||.++|.+||.+.|..||+.|.+....+.+..+ +.+|++++.-+||+|+.+|.+|.+.|++..+..
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~--ellarlcpnstgaeirsvcteagmfairarrk~ 405 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRF--ELLARLCPNSTGAEIRSVCTEAGMFAIRARRKV 405 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhH--HHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhh
Confidence 999999999999999999999999999999999999888877776 779999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHhcCcccc
Q 047690 557 VTMEHFEAAIDRVIGGLEKK 576 (811)
Q Consensus 557 It~ed~~~Al~rvi~g~e~~ 576 (811)
.|..||..|+.+++.|..+-
T Consensus 406 atekdfl~av~kvvkgy~kf 425 (435)
T KOG0729|consen 406 ATEKDFLDAVNKVVKGYAKF 425 (435)
T ss_pred hhHHHHHHHHHHHHHHHHhc
Confidence 99999999999999887553
No 13
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-44 Score=364.93 Aligned_cols=256 Identities=42% Similarity=0.690 Sum_probs=240.3
Q ss_pred ccccccccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 312 VTKVDKNAKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 312 ~~~~~~~~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
...+.+..++.+++.||.|++-.|++++|.++. |.+.+.|+..|+.+|+|+|||||||||||+||||+|+.....|+.+
T Consensus 141 i~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firv 220 (408)
T KOG0727|consen 141 ISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRV 220 (408)
T ss_pred ccccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeee
Confidence 334445567899999999999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred echhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEe
Q 047690 391 SGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIA 470 (811)
Q Consensus 391 s~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIa 470 (811)
.+++|+.+|.|+++..+|++|..|+.++|+||||||||++..+|-.. ..+.+.+.++.+-.||.+||||....+|-||.
T Consensus 221 vgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfda-qtgadrevqril~ellnqmdgfdq~~nvkvim 299 (408)
T KOG0727|consen 221 VGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDA-QTGADREVQRILIELLNQMDGFDQTTNVKVIM 299 (408)
T ss_pred ccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccc-cccccHHHHHHHHHHHHhccCcCcccceEEEE
Confidence 99999999999999999999999999999999999999999888543 45678899999999999999999999999999
Q ss_pred cCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 047690 471 GTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAA 550 (811)
Q Consensus 471 aTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aa 550 (811)
+||+.+.|||||+||||+||.|+||+||..+++-++.....+..+..++|+ +.+..+....||+||..+|++|.+.|.
T Consensus 300 atnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdl--e~~v~rpdkis~adi~aicqeagm~av 377 (408)
T KOG0727|consen 300 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDL--EDLVARPDKISGADINAICQEAGMLAV 377 (408)
T ss_pred ecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCH--HHHhcCccccchhhHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999999999999999888875 788888999999999999999999999
Q ss_pred HcCCCccCHHHHHHHHHHHh
Q 047690 551 RGENSQVTMEHFEAAIDRVI 570 (811)
Q Consensus 551 r~~~~~It~ed~~~Al~rvi 570 (811)
|.++-.|...||++|...++
T Consensus 378 r~nryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 378 RENRYVVLQKDFEKAYKTVV 397 (408)
T ss_pred HhcceeeeHHHHHHHHHhhc
Confidence 99999999999999998764
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-44 Score=364.36 Aligned_cols=248 Identities=43% Similarity=0.726 Sum_probs=236.7
Q ss_pred CCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF 399 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~ 399 (811)
+.-+++=|.|++..+++++|+++. .++|+.|..+|+.-|+|+|||||||||||+||+|+|+...+.|+.+++++++.+|
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 456788899999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccc
Q 047690 400 VGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILD 479 (811)
Q Consensus 400 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LD 479 (811)
.|++...+|++|-.|+.++|+|||+||||+++..|..++ .+++.+.++++..||.++|||..+.++-||.+||+.|.||
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~-~ggdsevqrtmlellnqldgfeatknikvimatnridild 300 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESG-SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILD 300 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCC-CCccHHHHHHHHHHHHhccccccccceEEEEecccccccc
Confidence 999999999999999999999999999999999887654 4578899999999999999999999999999999999999
Q ss_pred hhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCH
Q 047690 480 KALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTM 559 (811)
Q Consensus 480 pALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ 559 (811)
|||+||||+||.|+||+|+.+.|.+||+.|.++.++....+. ..+|...+|.|||++..+|.+|.+.|.|+.+-.+|+
T Consensus 301 ~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l--~kiaekm~gasgaevk~vcteagm~alrerrvhvtq 378 (404)
T KOG0728|consen 301 PALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINL--RKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQ 378 (404)
T ss_pred HhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCH--HHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccH
Confidence 999999999999999999999999999999999988877765 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 047690 560 EHFEAAIDRVIG 571 (811)
Q Consensus 560 ed~~~Al~rvi~ 571 (811)
+||+-|+.+++.
T Consensus 379 edfemav~kvm~ 390 (404)
T KOG0728|consen 379 EDFEMAVAKVMQ 390 (404)
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-44 Score=367.25 Aligned_cols=249 Identities=41% Similarity=0.684 Sum_probs=236.9
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
.++.-+++||.|++..+++|.|.+-. +.++++|+.+|+++|+|+|+|||||||||++|||.|...+..|+.+.+..++.
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 46778999999999999999987765 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
||.|.+++-+|+.|..|+..+|+||||||+|+++.+|-.+. ..++.+.++++..||.++|||.++..|-|||+||+.+.
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSe-k~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI 322 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhcccccccc-ccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc
Confidence 99999999999999999999999999999999999887543 35678899999999999999999999999999999999
Q ss_pred cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCcc
Q 047690 478 LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQV 557 (811)
Q Consensus 478 LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~I 557 (811)
|||||+|+||+||.|+||.|+.+.|..|++.|.++.....++.+ +.+|+.|.+|.|+++..+|-+|.++|.|++...|
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNf--eELaRsTddFNGAQcKAVcVEAGMiALRr~atev 400 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNF--EELARSTDDFNGAQCKAVCVEAGMIALRRGATEV 400 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCH--HHHhhcccccCchhheeeehhhhHHHHhcccccc
Confidence 99999999999999999999999999999999999999888886 8999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHh
Q 047690 558 TMEHFEAAIDRVI 570 (811)
Q Consensus 558 t~ed~~~Al~rvi 570 (811)
+.+||.+++..+.
T Consensus 401 ~heDfmegI~eVq 413 (424)
T KOG0652|consen 401 THEDFMEGILEVQ 413 (424)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999997764
No 16
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-44 Score=376.10 Aligned_cols=251 Identities=43% Similarity=0.699 Sum_probs=238.4
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
..+.-+|.|+.|++..+++++|-|+. |.+|+.|+.+|+++|+||+|||+||||||+||||+|+.....|+.+-+++++.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 35678999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
+|.|.+++.+|++|..|..++|+|+||||||+++.+|-.. .+++..+.++++..||.++|||.++..|-||.|||+.+.
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds-~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~ 336 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDS-NSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 336 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccC-CCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc
Confidence 9999999999999999999999999999999999988644 457788999999999999999999999999999999999
Q ss_pred cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCcc
Q 047690 478 LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQV 557 (811)
Q Consensus 478 LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~I 557 (811)
|||||.||||+||.|.|+.||...++.||..|..+..+..++.+ +.+......+|||||.++|.+|.++|.|..+..+
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnl--e~li~~kddlSGAdIkAictEaGllAlRerRm~v 414 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNL--EELIMTKDDLSGADIKAICTEAGLLALRERRMKV 414 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccH--HHHhhcccccccccHHHHHHHHhHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999888875 7788888889999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcC
Q 047690 558 TMEHFEAAIDRVIGG 572 (811)
Q Consensus 558 t~ed~~~Al~rvi~g 572 (811)
+++||..|.++|+..
T Consensus 415 t~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 415 TMEDFKKAKEKVLYK 429 (440)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999998753
No 17
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-43 Score=404.81 Aligned_cols=248 Identities=40% Similarity=0.718 Sum_probs=226.5
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
+-++|+|+||.|.+++|.++.+-++. |++|+.|.. |.+...|||||||||||||++|||+|.|+...|++|.+.++++
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 45899999999999999999999997 999999865 8888899999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC--CCCcEEEEecCCCC
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG--TTAGVVVIAGTNRP 475 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~--~~~~VIVIaaTN~p 475 (811)
||+|++++++|++|++||..+|||||+||+|+++++|++++.+|+ -+.+++.|||.|||++. +...|+||+|||||
T Consensus 744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGG--VMDRVVSQLLAELDgls~~~s~~VFViGATNRP 821 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGG--VMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP 821 (953)
T ss_pred HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccc--cHHHHHHHHHHHhhcccCCCCCceEEEecCCCc
Confidence 999999999999999999999999999999999999998877665 35689999999999997 46789999999999
Q ss_pred cccchhhcCCCCcceeeeccCC-CHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCC-CCcHHHHHHHHHHHHHHHHHcC
Q 047690 476 DILDKALLRPGRFDRQITIDKP-DIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTP-GFAGADIANVCNEAALIAARGE 553 (811)
Q Consensus 476 d~LDpALlRpGRFdr~I~v~~P-d~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~-GfSgaDL~~LvneAal~Aar~~ 553 (811)
|.|||||+||||||+.+++..+ |.+.+..+|+...++..++.++++ ..+|+.++ .|||||+-.+|..|.+.|+++.
T Consensus 822 DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL--~eiAk~cp~~~TGADlYsLCSdA~l~AikR~ 899 (953)
T KOG0736|consen 822 DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDL--VEIAKKCPPNMTGADLYSLCSDAMLAAIKRT 899 (953)
T ss_pred cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCH--HHHHhhCCcCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 556688999999999999999886 78898874 7999999999999999988762
Q ss_pred -----------------CCccCHHHHHHHHHHHhc
Q 047690 554 -----------------NSQVTMEHFEAAIDRVIG 571 (811)
Q Consensus 554 -----------------~~~It~ed~~~Al~rvi~ 571 (811)
.-.|+++||.+|.++...
T Consensus 900 i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 900 IHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred HHHhhhccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 113899999999988644
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.2e-43 Score=363.83 Aligned_cols=240 Identities=38% Similarity=0.622 Sum_probs=222.9
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
..++++|+||+|+++||+..+-++.+|++|++|.+| .|++||+|||||||||++|||+|+++++||+.+.+.+++..
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 457899999999999999999999999999999887 59999999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 399 FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
|+|.+..+++.+|+.|++.+|||+||||+|+++-.|.-+.. ......++|.||++|||...+.+|+.||+||+|+.|
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQel---RGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQEL---RGDVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHh---cccHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 99999999999999999999999999999999877754332 223457899999999999999999999999999999
Q ss_pred chhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHH-HHHHHHHHHHHHcCCCcc
Q 047690 479 DKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIA-NVCNEAALIAARGENSQV 557 (811)
Q Consensus 479 DpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~-~LvneAal~Aar~~~~~I 557 (811)
|||+++ ||...|+|.+|+.++|.+|++.+++..++..+.+ ++.+++.|.|+||+||. .++..|...|...++..|
T Consensus 268 D~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~--~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v 343 (368)
T COG1223 268 DPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD--LRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKV 343 (368)
T ss_pred CHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccC--HHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhh
Confidence 999999 9999999999999999999999999998877666 48999999999999995 577888889999999999
Q ss_pred CHHHHHHHHHH
Q 047690 558 TMEHFEAAIDR 568 (811)
Q Consensus 558 t~ed~~~Al~r 568 (811)
+.+||+.|+.+
T Consensus 344 ~~edie~al~k 354 (368)
T COG1223 344 EREDIEKALKK 354 (368)
T ss_pred hHHHHHHHHHh
Confidence 99999999976
No 19
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=4.8e-44 Score=369.85 Aligned_cols=203 Identities=45% Similarity=0.783 Sum_probs=177.8
Q ss_pred CHHHHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhhHHHHhhhhcCCCeEEEEEeeCCCCcccceecccccc-ccccH
Q 047690 558 TMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTK 636 (811)
Q Consensus 558 t~ed~~~Al~rvi~g~e~~~~~l~~~e~~~va~hEaGhAvv~~~l~~~~~~~kvsI~prg~~~lG~~~~~p~e~-~l~tk 636 (811)
|++||++|+++++.|++++...+++.+++++|||||||||++|++++.+++.+|||+|||. ++||+++.|.+. +..||
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~-~~G~~~~~~~~~~~~~t~ 79 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGS-ALGFTQFTPDEDRYIRTR 79 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCC-CCHCCEECHHTT-SS-BH
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCC-cceeEEeccchhcccccH
Confidence 6899999999999999987778999999999999999999999999989999999999998 999999999764 68999
Q ss_pred HHHHHHHHHhhhhHHHHHHHcC--CccCCccchHHHHHHHHHHHHHHhCCCCCcccccccCCCcc-------cccCCCCc
Q 047690 637 EQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQREDT-------FEMSKPYS 707 (811)
Q Consensus 637 ~~l~~~i~v~LgGRaAEel~fG--~~stGA~~DL~~AT~lA~~mV~~~GMs~~~g~~~~~~~~~~-------~~~~~~~s 707 (811)
++++++|+|+|||||||+++|| ++|+||++||++||+||+.||.+||||+++|++++....+. +...+++|
T Consensus 80 ~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~~s 159 (213)
T PF01434_consen 80 SYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSRRPMS 159 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EEESS-
T ss_pred HHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccccccccccccCCcc
Confidence 9999999999999999999999 99999999999999999999999999999999988653321 12245789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHH
Q 047690 708 SKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRV 761 (811)
Q Consensus 708 ~~t~~~id~eV~~il~~ay~ra~~lL~~~r~~l~~lA~~LlekEtL~~~ei~~i 761 (811)
+++...+|.+|+++|++||++|++||++||+.|++||++|+++++|+++||++|
T Consensus 160 ~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 160 EETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999986
No 20
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-42 Score=370.31 Aligned_cols=245 Identities=40% Similarity=0.614 Sum_probs=222.0
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
..++++|+||+|+++||+-|+|.|-. +.-|+.|+. ..++-+|||++||||||||+||||+|.||+..|+.|+.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 35789999999999999999998876 888888774 3466699999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCC-Cc---EEEEecCC
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTT-AG---VVVIAGTN 473 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~-~~---VIVIaaTN 473 (811)
+|.|++++.||-+|+.|+.++|++|||||||+||.+|+.+ +.++..+++-++||.+|||.... .+ |+|+|+||
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s---~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN 360 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS---SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN 360 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc---cchhHHHHHHHHHHHHhhccccccccceeEEEEeccC
Confidence 9999999999999999999999999999999999998753 56777889999999999998653 33 89999999
Q ss_pred CCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcC
Q 047690 474 RPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGE 553 (811)
Q Consensus 474 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~ 553 (811)
.|+.||.||+| ||...|+|++|+.++|..+|+..++...++.+++. +.||+.++||||+||.++|++|.+++.|+.
T Consensus 361 ~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~--~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 361 FPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNL--EDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred CCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999888777765 889999999999999999999999988851
Q ss_pred -----------------CCccCHHHHHHHHHHHhc
Q 047690 554 -----------------NSQVTMEHFEAAIDRVIG 571 (811)
Q Consensus 554 -----------------~~~It~ed~~~Al~rvi~ 571 (811)
+..|+++||+.|+.++-.
T Consensus 437 i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 437 IAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred HhcCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 234899999999988743
No 21
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.4e-41 Score=377.46 Aligned_cols=251 Identities=43% Similarity=0.683 Sum_probs=233.3
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
..+.++|+||+|++.+|++|++.+.. +.+|+.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 45789999999999999999999985 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
.|+|.++..++++|..|+.++||||||||||+++.+|... ..+.+.+..+++.++|.+||++....+++||++||+++.
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~-~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDA-QTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccc-cCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 9999999999999999999999999999999998776432 233456677899999999999988889999999999999
Q ss_pred cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCcc
Q 047690 478 LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQV 557 (811)
Q Consensus 478 LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~I 557 (811)
|||+++||||||+.|+|+.|+.++|.+||+.++.+.++..++++ ..++..|+||||+||.++|++|++.|.+++...|
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~--~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i 374 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL--EDFVSRPEKISAADIAAICQEAGMQAVRKNRYVI 374 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH--HHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999998887766664 8899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcC
Q 047690 558 TMEHFEAAIDRVIGG 572 (811)
Q Consensus 558 t~ed~~~Al~rvi~g 572 (811)
+++||..|+++++.+
T Consensus 375 ~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 375 LPKDFEKGYKTVVRK 389 (398)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998654
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=9e-40 Score=366.27 Aligned_cols=253 Identities=47% Similarity=0.776 Sum_probs=233.6
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
..++++|+||+|+++++++|.+.+.. +.+|+.|..+|...|+|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 45689999999999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
.|.|.++..++.+|..|+.++||||||||||.++..+.... .....+..+++.+++.+++++....+++||+|||+++.
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~-~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI 282 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCC-CCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999998775432 23345678889999999999988889999999999999
Q ss_pred cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCcc
Q 047690 478 LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQV 557 (811)
Q Consensus 478 LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~I 557 (811)
+|++++||||||+.|+|++|+.++|.+||+.|+++..+..+.+ +..+|..|.||+|+||.++|++|++.|.+++...|
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~--~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i 360 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD--LEELAELTEGASGADLKAICTEAGMFAIRDDRTEV 360 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 9999999999999999999999999999999999887776555 48899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCcc
Q 047690 558 TMEHFEAAIDRVIGGLE 574 (811)
Q Consensus 558 t~ed~~~Al~rvi~g~e 574 (811)
+.+||.+|++++..+.+
T Consensus 361 ~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 361 TMEDFLKAIEKVMGKEE 377 (389)
T ss_pred CHHHHHHHHHHHhcccc
Confidence 99999999999876543
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=366.07 Aligned_cols=250 Identities=42% Similarity=0.701 Sum_probs=232.0
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
..+.++|+||.|++++++++.+.+.. +.+|+.|..+|...|+|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 35678999999999999999999986 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
.|.|.++..++.+|..|+.++||||||||||+++.++... .++...+..+++.++|.+||++....++.||++||+++.
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~-~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDA-TSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCC-CCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 9999999999999999999999999999999999876532 234556778889999999999988889999999999999
Q ss_pred cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCcc
Q 047690 478 LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQV 557 (811)
Q Consensus 478 LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~I 557 (811)
||++++||||||+.|+|+.||.++|.+||+.|+++..+..+++. ..++..+.||||+||.++|++|++.|.++++..|
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl--~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~V 412 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL--EEFIMAKDELSGADIKAICTEAGLLALRERRMKV 412 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH--HHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999998877666554 8899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhc
Q 047690 558 TMEHFEAAIDRVIG 571 (811)
Q Consensus 558 t~ed~~~Al~rvi~ 571 (811)
+.+||..|+++++.
T Consensus 413 t~~D~~~A~~~v~~ 426 (438)
T PTZ00361 413 TQADFRKAKEKVLY 426 (438)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999854
No 24
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-39 Score=369.61 Aligned_cols=247 Identities=46% Similarity=0.732 Sum_probs=228.1
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
..+.++|+|+.|++++|+++++.+.+ ++.++.|...+.+.|+|+|||||||||||+||+|+|.+++.+|+.+.++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 45789999999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
+|+|+++++++.+|..|++.+||||||||+|++...|+.+. +....++++++|.+||+.....+|+||++||+|+.
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~----~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ 390 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE----DGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDD 390 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC----chHHHHHHHHHHHHhcCCCccCceEEEecCCCccc
Confidence 99999999999999999999999999999999998886431 22236899999999999999999999999999999
Q ss_pred cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcC-CCc
Q 047690 478 LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGE-NSQ 556 (811)
Q Consensus 478 LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~-~~~ 556 (811)
+|+|++||||||+.|+|++||.++|.+||+.|++........+.+++.++..|.||+|+||.++|.+|++.+.++. ...
T Consensus 391 ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~ 470 (494)
T COG0464 391 LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRRE 470 (494)
T ss_pred cCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999765543344556899999999999999999999999999988 778
Q ss_pred cCHHHHHHHHHHH
Q 047690 557 VTMEHFEAAIDRV 569 (811)
Q Consensus 557 It~ed~~~Al~rv 569 (811)
|+++||..|+.++
T Consensus 471 ~~~~~~~~a~~~~ 483 (494)
T COG0464 471 VTLDDFLDALKKI 483 (494)
T ss_pred ccHHHHHHHHHhc
Confidence 9999999999874
No 25
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-39 Score=363.09 Aligned_cols=229 Identities=37% Similarity=0.631 Sum_probs=213.5
Q ss_pred ccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 318 NAKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 318 ~~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
....+++|+||.|+.++|+.|++.+.+ -+.|..|.....+.+.|||||||||||||+||-|+|..++..|++|.+.+++
T Consensus 659 ~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL 738 (952)
T KOG0735|consen 659 VKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELL 738 (952)
T ss_pred cccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHH
Confidence 344569999999999999999999998 8899999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 397 EMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 397 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
++|.|.+++.+|++|..|+..+|||||+||+|+++++|+.++. | -..+++||||++|||...-.+|.|+|||.|||
T Consensus 739 ~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsT-G---VTDRVVNQlLTelDG~Egl~GV~i~aaTsRpd 814 (952)
T KOG0735|consen 739 SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDST-G---VTDRVVNQLLTELDGAEGLDGVYILAATSRPD 814 (952)
T ss_pred HHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCC-C---chHHHHHHHHHhhccccccceEEEEEecCCcc
Confidence 9999999999999999999999999999999999999975432 2 23579999999999999999999999999999
Q ss_pred ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 047690 477 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARG 552 (811)
Q Consensus 477 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~ 552 (811)
.+||||+||||+|+.++.+.|+..+|.+||+........+.++|+ +.+|..|.|||||||..++..|.+.|+.+
T Consensus 815 liDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl--~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 815 LIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDL--ECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred ccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccch--HHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887777765 89999999999999999999998887653
No 26
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.3e-38 Score=380.82 Aligned_cols=248 Identities=48% Similarity=0.780 Sum_probs=226.3
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
.+.++|+||+|++++|++|.+.+.+ +++++.|..+|.+.|+|+|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 4578999999999999999999997 999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 399 FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
|+|.+++.++.+|..|+..+||||||||||++++.|+.. .......+.+++||.+||++....+++||+|||+|+.|
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~---~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~l 603 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGAR---FDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDIL 603 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCC---CCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhC
Confidence 999999999999999999999999999999999877532 12334577999999999999888899999999999999
Q ss_pred chhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcC-----
Q 047690 479 DKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGE----- 553 (811)
Q Consensus 479 DpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~----- 553 (811)
|++++||||||+.|++++||.++|.+||+.++++..+..+++ +..+|..|.||||+||.++|++|++.|.++.
T Consensus 604 d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~--l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~ 681 (733)
T TIGR01243 604 DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD--LEELAEMTEGYTGADIEAVCREAAMAALRESIGSPA 681 (733)
T ss_pred CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999887776655 4889999999999999999999999888742
Q ss_pred -------------CCccCHHHHHHHHHHHhcC
Q 047690 554 -------------NSQVTMEHFEAAIDRVIGG 572 (811)
Q Consensus 554 -------------~~~It~ed~~~Al~rvi~g 572 (811)
...|+++||..|+.++-..
T Consensus 682 ~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 682 KEKLEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred chhhhcccccccccCcccHHHHHHHHHHcCCC
Confidence 1269999999999876443
No 27
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=4.2e-38 Score=359.74 Aligned_cols=244 Identities=29% Similarity=0.443 Sum_probs=213.8
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF 399 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~ 399 (811)
.+.++|+||.|++.+|+++.+....+ +......|...|+|+|||||||||||++||++|++++.||+.++++.+.+.|
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 35789999999999999999866543 2345667999999999999999999999999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccc
Q 047690 400 VGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILD 479 (811)
Q Consensus 400 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LD 479 (811)
+|.++.+++.+|..|+..+||||||||||.++..+... +......+++++++..|+. ...+|+||+|||+++.||
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~---~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld 374 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK---GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLP 374 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC---CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCC
Confidence 99999999999999999999999999999998654322 2234557788999999885 456899999999999999
Q ss_pred hhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCH
Q 047690 480 KALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTM 559 (811)
Q Consensus 480 pALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ 559 (811)
++++||||||+.|+|+.|+.++|.+||+.|+++.......+.++..+|..|.||||+||.++|++|+..|..++ +.++.
T Consensus 375 ~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~ 453 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTT 453 (489)
T ss_pred HHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCH
Confidence 99999999999999999999999999999999865443334456899999999999999999999998887754 56999
Q ss_pred HHHHHHHHHHhc
Q 047690 560 EHFEAAIDRVIG 571 (811)
Q Consensus 560 ed~~~Al~rvi~ 571 (811)
+||..|+..+.+
T Consensus 454 ~dl~~a~~~~~P 465 (489)
T CHL00195 454 DDILLALKQFIP 465 (489)
T ss_pred HHHHHHHHhcCC
Confidence 999999988764
No 28
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-39 Score=332.71 Aligned_cols=226 Identities=38% Similarity=0.589 Sum_probs=203.3
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
.+++|+|+||+|++.||+.|+|.|-. ++.|+.|.. +.++-+|+||||||||||++||||+|.|++..|++|+.+++++
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS 204 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 204 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH
Confidence 46899999999999999999998876 888988864 3445689999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCC-CCcEEEEecCCCCc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGT-TAGVVVIAGTNRPD 476 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~-~~~VIVIaaTN~pd 476 (811)
+|.|++++.++.+|+.|+.+.|+||||||||++|..|+. +.++..+++-..||++|.|... +++|+|+++||-|+
T Consensus 205 KWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e----nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw 280 (439)
T KOG0739|consen 205 KWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE----NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPW 280 (439)
T ss_pred HHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC----CchHHHHHHHHHHHHhhhccccCCCceEEEecCCCch
Confidence 999999999999999999999999999999999988764 3455667888999999999864 46899999999999
Q ss_pred ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 047690 477 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARG 552 (811)
Q Consensus 477 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~ 552 (811)
.||.|++| ||++.|+||+|+...|..+++.|+......... .+...|++.|+||||+||.-+|+.|.+.-.|+
T Consensus 281 ~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~-~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 281 VLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTE-QDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred hHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccch-hhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 99999999 999999999999999999999999887655443 34589999999999999999999998877664
No 29
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=335.12 Aligned_cols=226 Identities=37% Similarity=0.617 Sum_probs=208.1
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcC-CCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLG-AKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg-~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
....|+|+||.|++++++.|++.|-. ++.|+.|...+ .++|+||||+||||||||++|+|+|++++.+|+.|+.+.+.
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt 164 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLT 164 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccc
Confidence 45789999999999999999999987 99999985332 46889999999999999999999999999999999999999
Q ss_pred hhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCc--EEEEecCCC
Q 047690 397 EMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAG--VVVIAGTNR 474 (811)
Q Consensus 397 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~--VIVIaaTN~ 474 (811)
++|.|++++.++.+|..|.+.+||||||||+|.+.+.|. +..++.....-++|+...||+.++.+ |+|++|||+
T Consensus 165 ~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR 240 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNR 240 (386)
T ss_pred hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCC
Confidence 999999999999999999999999999999999998883 34566677788999999999987665 999999999
Q ss_pred CcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 047690 475 PDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARG 552 (811)
Q Consensus 475 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~ 552 (811)
|..||.|++| |+.++++|++|+.++|.+||+.++++.+++.++|+ ..+|..|.||||.||.++|..|++..+|.
T Consensus 241 P~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~--~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 241 PFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDL--DEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCH--HHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 9999999999 99999999999999999999999999998877775 89999999999999999999999887763
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=5.8e-37 Score=340.89 Aligned_cols=248 Identities=46% Similarity=0.769 Sum_probs=228.5
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
..+.++|+||+|++++++++.+.+.. +.+++.|..+|...|+|+||+||||||||++|+++|++++.+|+.+.++++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 45789999999999999999999976 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
.|.|.+...++.+|..++...||||||||+|.++..+... ..+...+...++.+++.+++++....+++||+|||+++.
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~-~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDS-GTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccC-CCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 9999999999999999999999999999999998766533 233456677889999999999887789999999999999
Q ss_pred cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCcc
Q 047690 478 LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQV 557 (811)
Q Consensus 478 LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~I 557 (811)
+|++++||||||+.|+|+.|+.++|.+||+.++....+..+.+ +..++..|.||+|+||.++|++|+..|.++++..|
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~--~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i 351 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD--LEAIAKMTEGASGADLKAICTEAGMFAIREERDYV 351 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999999998877765555 48899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH
Q 047690 558 TMEHFEAAIDRV 569 (811)
Q Consensus 558 t~ed~~~Al~rv 569 (811)
+.+||..|++++
T Consensus 352 ~~~d~~~a~~~~ 363 (364)
T TIGR01242 352 TMDDFIKAVEKV 363 (364)
T ss_pred CHHHHHHHHHHh
Confidence 999999999875
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-38 Score=330.81 Aligned_cols=246 Identities=41% Similarity=0.659 Sum_probs=231.3
Q ss_pred CCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF 399 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~ 399 (811)
..++|+.|.|.-+...++++.+.. |.+|..|..+|+++|+|++||||||||||++|+++|..+++.|+.++.+.+.+.|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 468999999999999999999987 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccc
Q 047690 400 VGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILD 479 (811)
Q Consensus 400 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LD 479 (811)
.|++++.+|+.|..|+.+.||||||||||+++.++. ......+.+.++||-.|+.+||+|.....|-+|+|||+|+.||
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~-se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLd 285 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRF-SEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLD 285 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEe-ccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccc
Confidence 999999999999999999999999999999998874 3345567889999999999999999999999999999999999
Q ss_pred hhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCH
Q 047690 480 KALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTM 559 (811)
Q Consensus 480 pALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ 559 (811)
|+|+||||+|+.+++|+|+...|..|++.|.+.+...-..+. +.+.+...||.|+|+.+.|.||-..|++.....+-+
T Consensus 286 paLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~--eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~ 363 (388)
T KOG0651|consen 286 PALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDD--EAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLH 363 (388)
T ss_pred hhhcCCccccceeccCCcchhhceeeEeeccccccccccccH--HHHHHHHhccChHHHhhhcccccccccchhhHHHhH
Confidence 999999999999999999999999999999988766655554 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 047690 560 EHFEAAIDRV 569 (811)
Q Consensus 560 ed~~~Al~rv 569 (811)
+|+..++.++
T Consensus 364 Ed~~k~vrk~ 373 (388)
T KOG0651|consen 364 EDFMKLVRKQ 373 (388)
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 32
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-36 Score=340.85 Aligned_cols=287 Identities=38% Similarity=0.636 Sum_probs=251.7
Q ss_pred CCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF 399 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~ 399 (811)
..++ .++.|+......+++.+.+ +.+|..|...|.++|+|+|+|||||||||.+++|+|++.++.++.+++++++..|
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5567 8999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHhcC-CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 400 VGVGPSRVRNLFQEARQCA-PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 400 vG~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
.|++++.+|..|++|.+++ |+||||||||+++++|... +.-..++..|++..||+.....++|||++||+|+.|
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~-----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sl 333 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA-----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSL 333 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc-----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcccc
Confidence 9999999999999999999 9999999999999988532 223567899999999999988999999999999999
Q ss_pred chhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccC
Q 047690 479 DKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVT 558 (811)
Q Consensus 479 DpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It 558 (811)
|++++| ||||+.+.+..|+..+|.+|++.+.+++++..+.+ +..+|..|+||+|+||..+|++|++.+.++ +
T Consensus 334 d~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~--l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~ 405 (693)
T KOG0730|consen 334 DPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVD--LEDIAVSTHGYVGADLAALCREASLQATRR-----T 405 (693)
T ss_pred Chhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhh--HHHHHHHccchhHHHHHHHHHHHHHHHhhh-----h
Confidence 999999 99999999999999999999999999998885454 488999999999999999999999999887 8
Q ss_pred HHHHHHHHHHHhcCccccchhhhhhhhhhhhhhhhh---------hHHHHhhhhcCCCeEEEEEeeCCCCcccceecccc
Q 047690 559 MEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESG---------HAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPN 629 (811)
Q Consensus 559 ~ed~~~Al~rvi~g~e~~~~~l~~~e~~~va~hEaG---------hAvv~~~l~~~~~~~kvsI~prg~~~lG~~~~~p~ 629 (811)
+++|+.|...+.....+. .+ .+...+.|.++| .-.|.|+++|++.+.+++|.|.- |...|.|+
T Consensus 406 ~~~~~~A~~~i~psa~Re--~~--ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppk----GVLlyGPP 477 (693)
T KOG0730|consen 406 LEIFQEALMGIRPSALRE--IL--VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPK----GVLLYGPP 477 (693)
T ss_pred HHHHHHHHhcCCchhhhh--ee--ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCc----eEEEECCC
Confidence 999999987664322211 11 344556677766 34578999999999999998843 44455554
No 33
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1.6e-34 Score=330.31 Aligned_cols=251 Identities=36% Similarity=0.602 Sum_probs=208.4
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC----------e
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP----------F 387 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp----------f 387 (811)
..++++|+||+|++++++++++.+.. +.+|+.|..+|.++|+|+|||||||||||++|+++|++++.+ |
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 45789999999999999999999886 899999999999999999999999999999999999998654 6
Q ss_pred EEeechhhhhhhhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCC
Q 047690 388 LSISGSDFMEMFVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTT 463 (811)
Q Consensus 388 i~vs~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~ 463 (811)
+.++++++..+|+|.++..++.+|..|+.. .||||||||+|+++++|+.+ ..++....++++||.+||++...
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~---~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG---VSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC---ccchHHHHHHHHHHHHhcccccC
Confidence 677888999999999999999999998864 69999999999999877532 22333456789999999999888
Q ss_pred CcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhh-ccCCCC-------CchhhhHHH--------
Q 047690 464 AGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKK-IKLDHE-------PSYYSQRLA-------- 527 (811)
Q Consensus 464 ~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~-~~l~~~-------~d~~l~~LA-------- 527 (811)
.+++||+|||+++.|||||+||||||+.|+|++|+.++|.+||+.|+.. ..+..+ ...++..++
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999875 222100 000111111
Q ss_pred ---------------------hhCCCCcHHHHHHHHHHHHHHHHHc----CCCccCHHHHHHHHHHHhcC
Q 047690 528 ---------------------ALTPGFAGADIANVCNEAALIAARG----ENSQVTMEHFEAAIDRVIGG 572 (811)
Q Consensus 528 ---------------------~~t~GfSgaDL~~LvneAal~Aar~----~~~~It~ed~~~Al~rvi~g 572 (811)
..+..+|||+|+++|.+|...|.++ +...|+++|+..|+..-...
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~ 481 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRE 481 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcc
Confidence 1245688999999999988877765 34578999999998876543
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.6e-32 Score=330.34 Aligned_cols=246 Identities=46% Similarity=0.729 Sum_probs=220.3
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
.+.++|+||+|++++++.+.+++.. +++|+.|..+|...|+|+||+||||||||++|+++|++++.+++.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 3679999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 399 FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
+.|.++.+++.+|+.|....||||||||||.++.++... .......++++|+..||++.....++||++||+++.|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~----~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~l 327 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV----TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDAL 327 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC----cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhc
Confidence 999999999999999999999999999999998776421 1223356889999999999888899999999999999
Q ss_pred chhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcC-----
Q 047690 479 DKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGE----- 553 (811)
Q Consensus 479 DpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~----- 553 (811)
|++++|+|||++.+.++.|+.++|.+||+.+.+...+..+.+ +..++..|.||+++|+..+|++|+..+.++.
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~--l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~ 405 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVD--LDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGK 405 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccC--HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999998877655544 4889999999999999999999998877642
Q ss_pred --------------CCccCHHHHHHHHHHHhc
Q 047690 554 --------------NSQVTMEHFEAAIDRVIG 571 (811)
Q Consensus 554 --------------~~~It~ed~~~Al~rvi~ 571 (811)
...++.+||..|+..+..
T Consensus 406 ~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~p 437 (733)
T TIGR01243 406 INFEAEEIPAEVLKELKVTMKDFMEALKMVEP 437 (733)
T ss_pred cccccccccchhcccccccHHHHHHHHhhccc
Confidence 124788999999987643
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-33 Score=328.55 Aligned_cols=249 Identities=37% Similarity=0.610 Sum_probs=225.2
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-----CCCeEEeech
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSISGS 393 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs~s 393 (811)
+..+.|++|+|.+.+++.|+|.|.+ |..|+.|..+++.+|+|+|++||||||||+.|+|+|..+ .+.|+.-.++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 4579999999999999999999988 999999999999999999999999999999999999987 5678888899
Q ss_pred hhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC
Q 047690 394 DFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN 473 (811)
Q Consensus 394 ~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN 473 (811)
+..++|+|+.+..++.+|++|+++.|+|||+||||-+++.|.. ........++..||..|||+..++.|+||+|||
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs----kqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS----KQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccc----hHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 9999999999999999999999999999999999999888742 345556788999999999999999999999999
Q ss_pred CCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcC
Q 047690 474 RPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGE 553 (811)
Q Consensus 474 ~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~ 553 (811)
+|+.+||||+||||||+.+++++|+.+.|.+|+..|.++.. ..-....+..+|..|.||-||||+.+|.+|++.+.++.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~-~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE-PPISRELLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC-CCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence 99999999999999999999999999999999999998876 33344557889999999999999999999999998874
Q ss_pred C----------------CccCHHHHHHHHHHHhcCc
Q 047690 554 N----------------SQVTMEHFEAAIDRVIGGL 573 (811)
Q Consensus 554 ~----------------~~It~ed~~~Al~rvi~g~ 573 (811)
- ..|...||..|+.++....
T Consensus 494 ~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 494 FPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred cCeeecccccccccchhhhhhhHhhhhhhhccCCCC
Confidence 2 2378889999988875543
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.98 E-value=2.6e-31 Score=288.55 Aligned_cols=219 Identities=20% Similarity=0.196 Sum_probs=174.5
Q ss_pred CCcccccc-ccchHhHHHHHHHHHHh-cCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 321 NKVYFRDV-AGCDEAKQEIMEFVHFL-KNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 321 ~~v~f~dV-~G~eeak~eL~e~v~~L-k~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
..-+|+++ .|+--++..+..++..+ ++. ...++.++|++++||||||||||++|+++|++++++|+.++++++.++
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~--l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNF--LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhh--hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 34678888 67777777766655432 221 123688999999999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHhc-----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcC------------C
Q 047690 399 FVGVGPSRVRNLFQEARQC-----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGF------------G 461 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~~-----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~------------~ 461 (811)
|+|++++.+|++|..|+.. +||||||||||+++++++.. ...-..+.+..+||.+||+. .
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~---~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~ 264 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT---QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKE 264 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC---CcchHHHHHHHHHHHHhcCCccccccccccccc
Confidence 9999999999999999764 69999999999999887521 11112233347889888863 3
Q ss_pred CCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCC----CcHHH
Q 047690 462 TTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPG----FAGAD 537 (811)
Q Consensus 462 ~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~G----fSgaD 537 (811)
...+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.|+++.+++. .++..|+..++| |+||-
T Consensus 265 ~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~~---~dv~~Lv~~f~gq~~Df~GAl 339 (413)
T PLN00020 265 EIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVSR---EDVVKLVDTFPGQPLDFFGAL 339 (413)
T ss_pred cCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCCH---HHHHHHHHcCCCCCchhhhHH
Confidence 3567999999999999999999999999975 58999999999999999876642 345788888877 56776
Q ss_pred HHHHHHHHHHHH
Q 047690 538 IANVCNEAALIA 549 (811)
Q Consensus 538 L~~LvneAal~A 549 (811)
-..+..++...-
T Consensus 340 rar~yd~~v~~~ 351 (413)
T PLN00020 340 RARVYDDEVRKW 351 (413)
T ss_pred HHHHHHHHHHHH
Confidence 677766665443
No 37
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=7.3e-32 Score=297.77 Aligned_cols=248 Identities=37% Similarity=0.572 Sum_probs=207.6
Q ss_pred CCCccccc--cccchHhHHHH--HHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCC-CeEEeechh
Q 047690 320 KNKVYFRD--VAGCDEAKQEI--MEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGV-PFLSISGSD 394 (811)
Q Consensus 320 ~~~v~f~d--V~G~eeak~eL--~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gv-pfi~vs~s~ 394 (811)
.+...|++ |.|++.--..+ +.++..+-.|+..+++|++--+|+|||||||||||++||.|...++. +--.|++.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 45677877 45666544433 23445567888999999999999999999999999999999998854 556789999
Q ss_pred hhhhhhcCchhHHHHHHHHHHhcC--------CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcE
Q 047690 395 FMEMFVGVGPSRVRNLFQEARQCA--------PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGV 466 (811)
Q Consensus 395 ~~~~~vG~~~~~vr~lF~~A~~~a--------P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~V 466 (811)
++++|+|++++++|++|+.|.+.. -.||++||||++|++|+.. .++..-..+++||||..|||...-.+|
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~--~g~TGVhD~VVNQLLsKmDGVeqLNNI 370 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSM--AGSTGVHDTVVNQLLSKMDGVEQLNNI 370 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCC--CCCCCccHHHHHHHHHhcccHHhhhcE
Confidence 999999999999999999885321 2499999999999998743 233444568999999999999999999
Q ss_pred EEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhcc----CCCCCchhhhHHHhhCCCCcHHHHHHHH
Q 047690 467 VVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIK----LDHEPSYYSQRLAALTPGFAGADIANVC 542 (811)
Q Consensus 467 IVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~----l~~~~d~~l~~LA~~t~GfSgaDL~~Lv 542 (811)
+||+-|||.|.+|.||+|||||..++++.+||.+.|.+||+.|.++.. ++.++| +++||++|..||||+|+.|+
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVd--l~elA~lTKNfSGAEleglV 448 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVD--LKELAALTKNFSGAELEGLV 448 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcC--HHHHHHHhcCCchhHHHHHH
Confidence 999999999999999999999999999999999999999999998753 344444 59999999999999999999
Q ss_pred HHHHHHHHHcC---------------CCccCHHHHHHHHHHHhc
Q 047690 543 NEAALIAARGE---------------NSQVTMEHFEAAIDRVIG 571 (811)
Q Consensus 543 neAal~Aar~~---------------~~~It~ed~~~Al~rvi~ 571 (811)
+.|...|..+. +-.|+.+||..|++.+.+
T Consensus 449 ksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkP 492 (744)
T KOG0741|consen 449 KSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKP 492 (744)
T ss_pred HHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCc
Confidence 99887776541 234899999999998744
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-30 Score=288.77 Aligned_cols=243 Identities=37% Similarity=0.554 Sum_probs=209.7
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
...+.|+|++|++.+|+.+.+.+.+ +..|..|..+ ..+++|+||.||||||||+|++|||.|++..|+.++++.+.++
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 4579999999999999999999998 6668887654 3456899999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCC--CCcEEEEecCCCCc
Q 047690 399 FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGT--TAGVVVIAGTNRPD 476 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~--~~~VIVIaaTN~pd 476 (811)
|+|.+++.++.+|..|+..+|+||||||||.+..+|.. ..++...+...++|..+++... .++|+||+|||+|+
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~----~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~ 301 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD----NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPW 301 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC----cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCch
Confidence 99999999999999999999999999999999988842 3455556788888888888643 45899999999999
Q ss_pred ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcC---
Q 047690 477 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGE--- 553 (811)
Q Consensus 477 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~--- 553 (811)
.+|.+++| ||.+.++|++|+.+.|..+|+.++...+. .-.+.++..+++.|.||++.||.++|.+|++.-.+..
T Consensus 302 e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~-~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~ 378 (428)
T KOG0740|consen 302 ELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPN-GLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGT 378 (428)
T ss_pred HHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccc
Confidence 99999999 99999999999999999999999988732 3334557899999999999999999999987543322
Q ss_pred ----------CCccCHHHHHHHHHHHh
Q 047690 554 ----------NSQVTMEHFEAAIDRVI 570 (811)
Q Consensus 554 ----------~~~It~ed~~~Al~rvi 570 (811)
.+.|+..||..|+..+-
T Consensus 379 ~~~~~~~~~~~r~i~~~df~~a~~~i~ 405 (428)
T KOG0740|consen 379 TDLEFIDADKIRPITYPDFKNAFKNIK 405 (428)
T ss_pred hhhhhcchhccCCCCcchHHHHHHhhc
Confidence 23477777888776653
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=2.3e-21 Score=209.35 Aligned_cols=214 Identities=21% Similarity=0.279 Sum_probs=163.5
Q ss_pred ccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCC---cEEEEcCCCCCHHHHHHHHHHhc-------CCCeEEeechh
Q 047690 325 FRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPK---GALLVGPPGTGKTLLAKATAGES-------GVPFLSISGSD 394 (811)
Q Consensus 325 f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pk---GvLL~GPPGTGKT~LAkAlA~e~-------gvpfi~vs~s~ 394 (811)
+++++|++++|+++.+++.++..++.+...|...|. ++||+||||||||++|+++|+.+ ..+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 348999999999999999887777777778876653 48999999999999999999875 23799999999
Q ss_pred hhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCC
Q 047690 395 FMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNR 474 (811)
Q Consensus 395 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~ 474 (811)
+...|+|.++.+++.+|+.|. ++||||||+|.+...++ .++.....++.|+..|+.. ..+++||++++.
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~------~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~ 170 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN------ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYK 170 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC------ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCc
Confidence 999999998888888888764 47999999999965322 1223356677788888753 356778887764
Q ss_pred Cc-----ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchh---hhHHHhh--CCCCc-HHHHHHHHH
Q 047690 475 PD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYY---SQRLAAL--TPGFA-GADIANVCN 543 (811)
Q Consensus 475 pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~---l~~LA~~--t~GfS-gaDL~~Lvn 543 (811)
.. .++|+|.+ ||+..|+|+.++.+++.+|++.++++.....+.+.. ...+.+. .+.|. ++++.+++.
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve 248 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALD 248 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 22 24699999 999999999999999999999999886654443321 2222222 23444 899999999
Q ss_pred HHHHHHHH
Q 047690 544 EAALIAAR 551 (811)
Q Consensus 544 eAal~Aar 551 (811)
.|....+.
T Consensus 249 ~~~~~~~~ 256 (287)
T CHL00181 249 RARMRQAN 256 (287)
T ss_pred HHHHHHHH
Confidence 87665443
No 40
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=8.1e-21 Score=204.96 Aligned_cols=211 Identities=21% Similarity=0.258 Sum_probs=163.9
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhcCCCC---CCcEEEEcCCCCCHHHHHHHHHHhcC-------CCeEEeechhhh
Q 047690 327 DVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKI---PKGALLVGPPGTGKTLLAKATAGESG-------VPFLSISGSDFM 396 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~---pkGvLL~GPPGTGKT~LAkAlA~e~g-------vpfi~vs~s~~~ 396 (811)
+++|++++|+.+.+++.++..++.+...|... ..++||+||||||||++|+++|..+. .+|+.++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 69999999999999999988888888888775 24799999999999999999988652 379999999999
Q ss_pred hhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCC-
Q 047690 397 EMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRP- 475 (811)
Q Consensus 397 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~p- 475 (811)
..+.|.++..++.+|+.|. ++||||||+|.+.+.+. ..+.....++.|+..|+. ...+++||++++..
T Consensus 103 ~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~------~~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN------ERDYGQEAIEILLQVMEN--QRDDLVVILAGYKDR 171 (284)
T ss_pred HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC------ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHH
Confidence 9999998888899888874 48999999999964321 122334567778888875 34577888877642
Q ss_pred -cc---cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhh-------CCCCcHHHHHHHHHH
Q 047690 476 -DI---LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAAL-------TPGFAGADIANVCNE 544 (811)
Q Consensus 476 -d~---LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~-------t~GfSgaDL~~Lvne 544 (811)
+. ++|+|.+ ||+..|+|+.++.+++.+|++.++++.....+.+. ...+... ..--+++++.|++..
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a-~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA-EEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH-HHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 32 4899999 99999999999999999999999998654433332 2333332 111248999999998
Q ss_pred HHHHHHH
Q 047690 545 AALIAAR 551 (811)
Q Consensus 545 Aal~Aar 551 (811)
|....+.
T Consensus 249 ~~~~~~~ 255 (284)
T TIGR02880 249 ARLRQAN 255 (284)
T ss_pred HHHHHHH
Confidence 8766554
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=1.4e-20 Score=200.61 Aligned_cols=213 Identities=20% Similarity=0.275 Sum_probs=159.9
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhcCCCCC---CcEEEEcCCCCCHHHHHHHHHHhc-------CCCeEEeech
Q 047690 324 YFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIP---KGALLVGPPGTGKTLLAKATAGES-------GVPFLSISGS 393 (811)
Q Consensus 324 ~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~p---kGvLL~GPPGTGKT~LAkAlA~e~-------gvpfi~vs~s 393 (811)
.+++++|++++|+.+.+++.++.........|.+.+ .++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 478999999999999999998665555555666544 368999999999999999999864 3478999999
Q ss_pred hhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC
Q 047690 394 DFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN 473 (811)
Q Consensus 394 ~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN 473 (811)
++...++|.....++++|..|. ++||||||+|.|.+. +..+.....++.|+..|+.. ...+++|++++
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~-------~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~ 151 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG-------GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGY 151 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC-------CccchHHHHHHHHHHHHhcc--CCCEEEEecCC
Confidence 9999999999999999998774 489999999999531 11223345778888888864 34566665554
Q ss_pred CCc-----ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhh---------CCCCcHHHHH
Q 047690 474 RPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAAL---------TPGFAGADIA 539 (811)
Q Consensus 474 ~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~---------t~GfSgaDL~ 539 (811)
..+ .++|+|.+ ||+..|+++.++.+++.+|++.++.......+.+. +..++.. ...-.++.+.
T Consensus 152 ~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a-~~~l~~~~~~~~~~~~~~~gn~R~~~ 228 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA-KWKLREHLYKVDQLSSREFSNARYVR 228 (261)
T ss_pred cchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH-HHHHHHHHHHHHhccCCCCchHHHHH
Confidence 322 36889998 99999999999999999999999987655443332 2333221 1123578888
Q ss_pred HHHHHHHHHHHH
Q 047690 540 NVCNEAALIAAR 551 (811)
Q Consensus 540 ~LvneAal~Aar 551 (811)
|++..|....+.
T Consensus 229 n~~e~a~~~~~~ 240 (261)
T TIGR02881 229 NIIEKAIRRQAV 240 (261)
T ss_pred HHHHHHHHHHHH
Confidence 988887665543
No 42
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-20 Score=204.00 Aligned_cols=235 Identities=26% Similarity=0.403 Sum_probs=177.7
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFV 400 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~v 400 (811)
.+-.|++|+-....+..|..+...-.|-+. .-.+-++||+|||||||||++||.||...|..+-.+.+.|..-. -
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 344599999999999999998876555544 23345789999999999999999999999999988888875322 1
Q ss_pred cCchhHHHHHHHHHHhcCC-eEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccc
Q 047690 401 GVGPSRVRNLFQEARQCAP-SIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILD 479 (811)
Q Consensus 401 G~~~~~vr~lF~~A~~~aP-~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LD 479 (811)
..+-..+..+|.-|++... -+|||||.|++...|.. ...+...+..||.||-.-- ..+..++++.+||+|..||
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk---tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK---TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch---hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchh
Confidence 1233578899999987554 48999999999887753 2445667889999985532 2345789999999999999
Q ss_pred hhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCC-------------------------CCchhhhHHHhhCCCCc
Q 047690 480 KALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDH-------------------------EPSYYSQRLAALTPGFA 534 (811)
Q Consensus 480 pALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~-------------------------~~d~~l~~LA~~t~GfS 534 (811)
.|+-. |||..|+|++|..++|..||..|+.++-... +.+..+...|+.|.|||
T Consensus 500 sAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS 577 (630)
T KOG0742|consen 500 SAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS 577 (630)
T ss_pred HHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCc
Confidence 99999 9999999999999999999999997643211 11223577899999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 047690 535 GADIANVCNEAALIAARGENSQVTMEHFEAAID 567 (811)
Q Consensus 535 gaDL~~LvneAal~Aar~~~~~It~ed~~~Al~ 567 (811)
|++|..|+--....+.-.....++..-|++.++
T Consensus 578 GREiakLva~vQAavYgsedcvLd~~lf~e~v~ 610 (630)
T KOG0742|consen 578 GREIAKLVASVQAAVYGSEDCVLDEALFDERVD 610 (630)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 999999986432222223344455555555443
No 43
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.85 E-value=5.4e-21 Score=179.87 Aligned_cols=130 Identities=43% Similarity=0.707 Sum_probs=116.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCchhHHHHHHHHHHhcC-CeEEEEcCcchhhhhcCCCCCC
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCA-PSIIFIDEIDAIGRARGRGGFS 440 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~ 440 (811)
+||+||||||||++|+++|+.++.+++.++++++.+.+.+...+.++.+|..++... ||||||||+|.+..... .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~----~ 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ----P 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS----T
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc----c
Confidence 699999999999999999999999999999999998888899999999999999888 99999999999988761 1
Q ss_pred CCchHHHHHHHHHHHhhhcCCCC-CcEEEEecCCCCcccchhhcCCCCcceeeeccC
Q 047690 441 GANDERESTLNQLLVEMDGFGTT-AGVVVIAGTNRPDILDKALLRPGRFDRQITIDK 496 (811)
Q Consensus 441 ~~~~e~~~tLnqLL~emDg~~~~-~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~ 496 (811)
.........+++|+..++..... .+++||++||.++.++++++| +||++.|++++
T Consensus 77 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 34566778899999999987665 569999999999999999998 89999999874
No 44
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1e-20 Score=209.35 Aligned_cols=208 Identities=26% Similarity=0.374 Sum_probs=164.3
Q ss_pred CccccccccchHhHHHHHHHH-HHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFV-HFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFV 400 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v-~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~v 400 (811)
+-+|+.|+=..+.|++|.+-+ +|++..+-|++.|...-+|.|||||||||||+++.|+|++++..++-++.++..
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~---- 272 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK---- 272 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc----
Confidence 378999999999999998755 568999999999999999999999999999999999999999999988877642
Q ss_pred cCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCC--c-hHHHHHHHHHHHhhhcCCCCC--cEEEEecCCCC
Q 047690 401 GVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGA--N-DERESTLNQLLVEMDGFGTTA--GVVVIAGTNRP 475 (811)
Q Consensus 401 G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~--~-~e~~~tLnqLL~emDg~~~~~--~VIVIaaTN~p 475 (811)
.. ..++.++..+.. .+||+|++||+-...+++...... + ....-++..||..+||+-+.+ .-|||.|||++
T Consensus 273 -~n-~dLr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 273 -LD-SDLRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred -Cc-HHHHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 22 237877766543 379999999997654443221111 1 123468999999999997776 68999999999
Q ss_pred cccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCC--CcHHHHHHH
Q 047690 476 DILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPG--FAGADIANV 541 (811)
Q Consensus 476 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~G--fSgaDL~~L 541 (811)
+.|||||+||||.|.+|++..=+..+-+.++..|+.... +..+ ...+.+...+ .|+||++..
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~L-~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHRL-FDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---Ccch-hHHHHHHhhcCccCHHHHHHH
Confidence 999999999999999999999999999999999986532 1111 2444444443 589998664
No 45
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1e-19 Score=209.36 Aligned_cols=267 Identities=23% Similarity=0.405 Sum_probs=198.1
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCchhH
Q 047690 327 DVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSR 406 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~~~ 406 (811)
...+.+.... ++++.+.-+..-...+.+....+||+|+||||||++++++|.++|.+++.++|.++........+.+
T Consensus 402 ~~~~~~~~~~---~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etk 478 (953)
T KOG0736|consen 402 SPPGLEAKVL---ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETK 478 (953)
T ss_pred CCccchHHHH---HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHH
Confidence 3444554444 4444444443333345556667999999999999999999999999999999999999988889999
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC-CCCcEEEEecCCCCcccchhhcCC
Q 047690 407 VRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG-TTAGVVVIAGTNRPDILDKALLRP 485 (811)
Q Consensus 407 vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~-~~~~VIVIaaTN~pd~LDpALlRp 485 (811)
+...|..|+.+.|+|||+-++|.++..+. .+..-...+.++.++. .|.+. +..+++||++|+..+.+++.+++
T Consensus 479 l~~~f~~a~~~~pavifl~~~dvl~id~d----gged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~- 552 (953)
T KOG0736|consen 479 LQAIFSRARRCSPAVLFLRNLDVLGIDQD----GGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS- 552 (953)
T ss_pred HHHHHHHHhhcCceEEEEeccceeeecCC----CchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH-
Confidence 99999999999999999999999985443 2334444566666665 44443 55689999999999999999999
Q ss_pred CCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHH---HHcC---------
Q 047690 486 GRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIA---ARGE--------- 553 (811)
Q Consensus 486 GRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~A---ar~~--------- 553 (811)
-|-..|.++.|+.++|.+||+.++....+..++. ...+|.+|.||+.+|+..++..+-+.+ ..+.
T Consensus 553 -~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~--~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~ 629 (953)
T KOG0736|consen 553 -LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVN--LKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEE 629 (953)
T ss_pred -hhhhhccCCCCCHHHHHHHHHHHHhccccchHHH--HHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhc
Confidence 6777899999999999999999999887766554 489999999999999999887652221 1111
Q ss_pred --------CCccCHHHHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhh------H---HHHhhhhcCCCe
Q 047690 554 --------NSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGH------A---VAGWFLEHAEPL 608 (811)
Q Consensus 554 --------~~~It~ed~~~Al~rvi~g~e~~~~~l~~~e~~~va~hEaGh------A---vv~~~l~~~~~~ 608 (811)
...++++||..|+.+.-... +..+-.-....|.||++|- - -++.+|+|++-+
T Consensus 630 ~~~~~~~~~~~l~~edf~kals~~~~~f---s~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLf 698 (953)
T KOG0736|consen 630 DEGELCAAGFLLTEEDFDKALSRLQKEF---SDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELF 698 (953)
T ss_pred cccccccccceecHHHHHHHHHHHHHhh---hhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhh
Confidence 24689999999999762110 1112222234567777662 1 245667776644
No 46
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.2e-19 Score=189.15 Aligned_cols=241 Identities=21% Similarity=0.281 Sum_probs=179.8
Q ss_pred cccccccchHhHHHHHHHHHH-hcCchhhhh-cCCCCCCcEEEEcCCCCCHHHHHHHHHHhcC---------CCeEEeec
Q 047690 324 YFRDVAGCDEAKQEIMEFVHF-LKNPRKYED-LGAKIPKGALLVGPPGTGKTLLAKATAGESG---------VPFLSISG 392 (811)
Q Consensus 324 ~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~-lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~g---------vpfi~vs~ 392 (811)
-|+.++=-...|++|..++.. +.-.++-.. -=+...+=+||+||||||||+|+||+|+.+. ..++.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 366677678899999887764 322221110 0122345689999999999999999999763 35789999
Q ss_pred hhhhhhhhcCchhHHHHHHHHHHhcC---Ce--EEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEE
Q 047690 393 SDFMEMFVGVGPSRVRNLFQEARQCA---PS--IIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVV 467 (811)
Q Consensus 393 s~~~~~~vG~~~~~vr~lF~~A~~~a---P~--ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VI 467 (811)
..+.++|.+++.+.+..+|++..... .+ .++|||+++|+..|.............+++|.+|++||.+....+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 99999999999999999999886532 22 56799999999888544333445567889999999999999999999
Q ss_pred EEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccC-----CCC----C-------chhhhHHHh-hC
Q 047690 468 VIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKL-----DHE----P-------SYYSQRLAA-LT 530 (811)
Q Consensus 468 VIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l-----~~~----~-------d~~l~~LA~-~t 530 (811)
+++|+|-.+.||.|+.. |-|-+.+|++|+...|.+|++..+..+-. ... . +.....++. .+
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999999 99999999999999999999998764311 000 0 111122222 25
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Q 047690 531 PGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDR 568 (811)
Q Consensus 531 ~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~r 568 (811)
.|.||+-|+.|=--|. |..-....|+.++|..|+-.
T Consensus 378 ~gLSGRtlrkLP~Lah--a~y~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 378 VGLSGRTLRKLPLLAH--AEYFRTFTVDLSNFLLALLE 413 (423)
T ss_pred cCCccchHhhhhHHHH--HhccCCCccChHHHHHHHHH
Confidence 8999999988754432 22223457999999888743
No 47
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.4e-18 Score=201.15 Aligned_cols=262 Identities=41% Similarity=0.620 Sum_probs=211.6
Q ss_pred hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCchhHHHHHHHHHHhcCCeEEEE
Q 047690 345 LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFI 424 (811)
Q Consensus 345 Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfI 424 (811)
+..+..+..++..+|++++++||||||||++++++|.+ +..++.+++.+....+.+.++.+++.+|..++..+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45677788899999999999999999999999999999 76668899999999999999999999999999999999999
Q ss_pred cCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHH
Q 047690 425 DEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQ 504 (811)
Q Consensus 425 DEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~e 504 (811)
||+|.+.+.+.. .........+.+++..|+++.... +++++.||++..+|+++++||||++.+.+..|+...+.+
T Consensus 83 d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~e 157 (494)
T COG0464 83 DEIDALAPKRSS----DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLE 157 (494)
T ss_pred chhhhcccCccc----cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHH
Confidence 999999887753 233445678899999999988444 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcC------CCccCHHHHHHHHHHHhcC--c--c
Q 047690 505 IFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGE------NSQVTMEHFEAAIDRVIGG--L--E 574 (811)
Q Consensus 505 IL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~------~~~It~ed~~~Al~rvi~g--~--e 574 (811)
|+..+........+.+ ...++..+.|++++++..+|.++...+.++. ...++.+++.++++++... . +
T Consensus 158 i~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (494)
T COG0464 158 ILQIHTRLMFLGPPGT--GKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPSRGVLFE 235 (494)
T ss_pred HHHHHHhcCCCccccc--HHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcccccccC
Confidence 9999998876665444 4889999999999999999999988888875 3458999999999987542 0 0
Q ss_pred ccchhhhhhhhhhhhhhhhhhHHHHhhhhcCCCeEEEEEee
Q 047690 575 KKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVP 615 (811)
Q Consensus 575 ~~~~~l~~~e~~~va~hEaGhAvv~~~l~~~~~~~kvsI~p 615 (811)
.....+.+. --.-...+..+-.+.|++.+++-+.+..+.|
T Consensus 236 ~~~v~~~di-ggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~ 275 (494)
T COG0464 236 DEDVTLDDI-GGLEEAKEELKEAIETPLKRPELFRKLGLRP 275 (494)
T ss_pred CCCcceehh-hcHHHHHHHHHHHHHhHhhChHHHHhcCCCC
Confidence 000000000 0011233455677888888877555444444
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.79 E-value=5.8e-18 Score=183.59 Aligned_cols=211 Identities=21% Similarity=0.302 Sum_probs=156.9
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCc
Q 047690 324 YFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVG 403 (811)
Q Consensus 324 ~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~ 403 (811)
+|+|++|++++++.|..++...+.. ...+.+++|+||||||||+||+++|++++.++..++++... .
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~------~ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE------K 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhc------C
Confidence 6999999999999999888643222 12356799999999999999999999999988777654321 1
Q ss_pred hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC----------------CCCcEE
Q 047690 404 PSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG----------------TTAGVV 467 (811)
Q Consensus 404 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~----------------~~~~VI 467 (811)
...+...+... ..+.+|||||+|.+... ....+ +..|+... ...+++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~------------~~e~l---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPA------------VEELL---YPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHH------------HHHHh---hHHHhhhheeeeeccCccccceeecCCCeE
Confidence 12233333322 34679999999998321 12222 22232211 123478
Q ss_pred EEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHH
Q 047690 468 VIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAAL 547 (811)
Q Consensus 468 VIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal 547 (811)
+|++||++..+++++++ ||...+.++.|+.+++.+|++..+...+...+.+ .+..+++.+.|. ++.+.++++.+..
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~-al~~ia~~~~G~-pR~~~~ll~~~~~ 207 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPE-AALEIARRSRGT-PRIANRLLRRVRD 207 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHH-HHHHHHHHhCCC-cchHHHHHHHHHH
Confidence 99999999999999998 9988999999999999999999988766655444 357888888874 5788899998877
Q ss_pred HHHHcCCCccCHHHHHHHHHH
Q 047690 548 IAARGENSQVTMEHFEAAIDR 568 (811)
Q Consensus 548 ~Aar~~~~~It~ed~~~Al~r 568 (811)
.|...+...|+.+++..++..
T Consensus 208 ~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 208 FAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHHcCCCCcCHHHHHHHHHH
Confidence 776666778999999999876
No 49
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.5e-18 Score=195.22 Aligned_cols=233 Identities=24% Similarity=0.247 Sum_probs=175.6
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcC----CCeEEeechhhhhhhhc
Q 047690 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESG----VPFLSISGSDFMEMFVG 401 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~g----vpfi~vs~s~~~~~~vG 401 (811)
.|++-...+|++.-+ ..-.| .-.+.++||+||+|||||.|+++++.++. +.+..++|+.+...-..
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 455555555555443 11112 23356799999999999999999999873 56778899988766555
Q ss_pred CchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHh-hhcCC-CCCcEEEEecCCCCcccc
Q 047690 402 VGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVE-MDGFG-TTAGVVVIAGTNRPDILD 479 (811)
Q Consensus 402 ~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~e-mDg~~-~~~~VIVIaaTN~pd~LD 479 (811)
...+-++.+|..|.+++|+||++|++|.|....+ ..++......+.++.+|.. ++.+. .+..+.|||+.+....|+
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~--~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS--NENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc--ccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 5667889999999999999999999999987322 2223334444444444432 23332 344579999999999999
Q ss_pred hhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHc----CCC
Q 047690 480 KALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARG----ENS 555 (811)
Q Consensus 480 pALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~----~~~ 555 (811)
|-|.+|++|+.++.++.|+..+|.+||+..+++...+...+ +++.++..|+||...|+.-++.+|...|.+. ...
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~-dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~k 634 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMD-DLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPK 634 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhH-HHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999998866433322 3466999999999999999999988777632 223
Q ss_pred ccCHHHHHHHHHHHhc
Q 047690 556 QVTMEHFEAAIDRVIG 571 (811)
Q Consensus 556 ~It~ed~~~Al~rvi~ 571 (811)
.+|.++|.++++....
T Consensus 635 lltke~f~ksL~~F~P 650 (952)
T KOG0735|consen 635 LLTKELFEKSLKDFVP 650 (952)
T ss_pred cchHHHHHHHHHhcCh
Confidence 7899999999988743
No 50
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.78 E-value=9.3e-18 Score=184.57 Aligned_cols=217 Identities=20% Similarity=0.281 Sum_probs=162.8
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhc
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVG 401 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG 401 (811)
+.+|++++|+++.++.+..++...+.+ ...+.++||+||||||||++|+++|++++.++..+++..+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~----- 88 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE----- 88 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc-----
Confidence 358999999999999999888754322 23467899999999999999999999999998887765432
Q ss_pred CchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhh------hc-CC------CCCcEEE
Q 047690 402 VGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEM------DG-FG------TTAGVVV 468 (811)
Q Consensus 402 ~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~em------Dg-~~------~~~~VIV 468 (811)
....+..++... ..++||||||||.+.. ..+..+..++... +. .. .-.++++
T Consensus 89 -~~~~l~~~l~~l--~~~~vl~IDEi~~l~~------------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~l 153 (328)
T PRK00080 89 -KPGDLAAILTNL--EEGDVLFIDEIHRLSP------------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTL 153 (328)
T ss_pred -ChHHHHHHHHhc--ccCCEEEEecHhhcch------------HHHHHHHHHHHhcceeeeeccCccccceeecCCCceE
Confidence 123344444433 3468999999999832 1122233332221 00 00 1124788
Q ss_pred EecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHH
Q 047690 469 IAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALI 548 (811)
Q Consensus 469 IaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~ 548 (811)
|++||++..++++|++ ||...+.++.|+.+++.+|++..+...+...+.+. +..++..+.| +++.+.++++.+...
T Consensus 154 i~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~-~~~ia~~~~G-~pR~a~~~l~~~~~~ 229 (328)
T PRK00080 154 IGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEG-ALEIARRSRG-TPRIANRLLRRVRDF 229 (328)
T ss_pred EeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHHcCC-CchHHHHHHHHHHHH
Confidence 9999999999999988 99989999999999999999999988776665543 5788988887 558888999887777
Q ss_pred HHHcCCCccCHHHHHHHHHHH
Q 047690 549 AARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 549 Aar~~~~~It~ed~~~Al~rv 569 (811)
|..++...|+.+++..+++.+
T Consensus 230 a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 230 AQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHcCCCCCCHHHHHHHHHHh
Confidence 776667789999999999754
No 51
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.77 E-value=1.4e-17 Score=200.99 Aligned_cols=225 Identities=20% Similarity=0.310 Sum_probs=165.2
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----------CCCeEEee
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSIS 391 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----------gvpfi~vs 391 (811)
+-++++++|.++....+.+++. . +...++||+||||||||++|+++|..+ +..++.++
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~---~---------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLC---R---------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 3478999999988887666553 1 224578999999999999999999986 67789999
Q ss_pred chhhh--hhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEE
Q 047690 392 GSDFM--EMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVI 469 (811)
Q Consensus 392 ~s~~~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVI 469 (811)
++.+. .+|.|..+++++.+|+.+....|+||||||||.|...+..+ ++....... |...+ .+..+.+|
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---~~~~~~~~~---L~~~l----~~g~i~~I 315 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS---GGSMDASNL---LKPAL----SSGKLRCI 315 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC---CccHHHHHH---HHHHH----hCCCeEEE
Confidence 98887 46889999999999999988889999999999997654211 111222222 33333 24679999
Q ss_pred ecCCCCc-----ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCC---CchhhhHHHhhCCCCc-----HH
Q 047690 470 AGTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHE---PSYYSQRLAALTPGFA-----GA 536 (811)
Q Consensus 470 aaTN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~---~d~~l~~LA~~t~GfS-----ga 536 (811)
++||..+ .+|++|.| ||. .|.|+.|+.+++.+||+.+......... .+..+..++..+..|- +.
T Consensus 316 gaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ 392 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPD 392 (731)
T ss_pred EecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCH
Confidence 9999643 47999999 996 7999999999999999987765321111 2333566777665553 44
Q ss_pred HHHHHHHHHHHHHHHc----CCCccCHHHHHHHHHHHhc
Q 047690 537 DIANVCNEAALIAARG----ENSQVTMEHFEAAIDRVIG 571 (811)
Q Consensus 537 DL~~LvneAal~Aar~----~~~~It~ed~~~Al~rvi~ 571 (811)
-...++++|+.....+ ....|+.+|+..++.+..+
T Consensus 393 kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tg 431 (731)
T TIGR02639 393 KAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAH 431 (731)
T ss_pred HHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhC
Confidence 4567777765543322 2346999999999998754
No 52
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.76 E-value=8.9e-18 Score=173.21 Aligned_cols=190 Identities=21% Similarity=0.315 Sum_probs=128.5
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhc
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVG 401 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG 401 (811)
+-+|+|++|+++++..+.-+++..+... ....++|||||||+|||+||+.||++++++|..+++..+.
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~----- 87 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE----- 87 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC-------
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh-----
Confidence 4589999999999999988887543221 1234799999999999999999999999999999886532
Q ss_pred CchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC--------CC--------Cc
Q 047690 402 VGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG--------TT--------AG 465 (811)
Q Consensus 402 ~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~--------~~--------~~ 465 (811)
....+..++.... ...||||||||.+. ...+..| +..|+.+. .+ ..
T Consensus 88 -k~~dl~~il~~l~--~~~ILFIDEIHRln------------k~~qe~L---lpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 88 -KAGDLAAILTNLK--EGDILFIDEIHRLN------------KAQQEIL---LPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp -SCHHHHHHHHT----TT-EEEECTCCC--------------HHHHHHH---HHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred -hHHHHHHHHHhcC--CCcEEEEechhhcc------------HHHHHHH---HHHhccCeEEEEeccccccceeeccCCC
Confidence 1234444444433 35799999999993 2333344 44444331 11 24
Q ss_pred EEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHH
Q 047690 466 VVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEA 545 (811)
Q Consensus 466 VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneA 545 (811)
+.+|+||++...|.+.|+. ||....++..++.++..+|++...+..++..+.+. ...||..+.| +++-..++++.+
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~-~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDA-AEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHH-HHHHHHCTTT-SHHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHH-HHHHHHhcCC-ChHHHHHHHHHH
Confidence 8899999999999999999 99988899999999999999988887776666554 4779999987 777777776654
No 53
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.75 E-value=3e-17 Score=191.28 Aligned_cols=214 Identities=21% Similarity=0.290 Sum_probs=148.3
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----------CCCeEEe
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSI 390 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----------gvpfi~v 390 (811)
.+.+|++++|++++++.++..+. ...+.++||+||||||||++|++++.++ +.||+.+
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 45789999999999988875421 1235689999999999999999998643 4689999
Q ss_pred echhh-------hhhhhcCch----------------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHH
Q 047690 391 SGSDF-------MEMFVGVGP----------------SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERE 447 (811)
Q Consensus 391 s~s~~-------~~~~vG~~~----------------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~ 447 (811)
+|+.. .+...+... ..-..++. ....++|||||||.+. ...+
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~------------~~~q 192 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELH------------PVQM 192 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCC------------HHHH
Confidence 98631 111111000 00001122 2234799999999982 2233
Q ss_pred HHHHHHHHhh----h-----cC--------------CCCCc-EEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHH
Q 047690 448 STLNQLLVEM----D-----GF--------------GTTAG-VVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRD 503 (811)
Q Consensus 448 ~tLnqLL~em----D-----g~--------------~~~~~-VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~ 503 (811)
..|..+|.+- + +. .-..+ .++++||+.|+.++|++++ |+. .+.++.++.+++.
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHH
Confidence 3333333320 0 00 00122 4555667789999999999 884 7889989999999
Q ss_pred HHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 047690 504 QIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAID 567 (811)
Q Consensus 504 eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~ 567 (811)
+|++..+++.+...+.+. ++.++..+. +++++.++++.|+..|..+++..|+.+|+++++.
T Consensus 270 ~Il~~~a~k~~i~is~~a-l~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHA-LELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHcCCCcCHHH-HHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 999999998776554443 456666554 7899999999999988888888999999999985
No 54
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.74 E-value=1.4e-16 Score=191.43 Aligned_cols=226 Identities=24% Similarity=0.325 Sum_probs=164.7
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----------CCCeEEee
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSIS 391 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----------gvpfi~vs 391 (811)
.=.++.++|.++....+.+++.. +.+.++||+||||||||++|+++|... +..++.++
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 34688999999887777776542 124578999999999999999999864 44556666
Q ss_pred chhhh--hhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEE
Q 047690 392 GSDFM--EMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVI 469 (811)
Q Consensus 392 ~s~~~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVI 469 (811)
...++ ..|.|..+.+++.+|..+.+..++||||||||.|...+.. .+...+..+++..++ .+..+.||
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~---~~g~~d~~nlLkp~L-------~~g~i~vI 319 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA---SGGQVDAANLIKPLL-------SSGKIRVI 319 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC---CCcHHHHHHHHHHHH-------hCCCeEEE
Confidence 66555 4578888999999999998888999999999999765431 122223333344433 35679999
Q ss_pred ecCCCCc-----ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCch---hhhHHHhhC-----CCCcHH
Q 047690 470 AGTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSY---YSQRLAALT-----PGFAGA 536 (811)
Q Consensus 470 aaTN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~---~l~~LA~~t-----~GfSga 536 (811)
++||.++ .+|++|.| ||+ .|.|+.|+.+++..||+.+..++.....+.. .+...+.++ ..+-+.
T Consensus 320 gATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPd 396 (758)
T PRK11034 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_pred ecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChH
Confidence 9999875 47999999 996 7999999999999999988776655444422 223333332 344566
Q ss_pred HHHHHHHHHHHHHH----HcCCCccCHHHHHHHHHHHhcC
Q 047690 537 DIANVCNEAALIAA----RGENSQVTMEHFEAAIDRVIGG 572 (811)
Q Consensus 537 DL~~LvneAal~Aa----r~~~~~It~ed~~~Al~rvi~g 572 (811)
....++++|+.... ...+..|+.+|+.+.+.+..+-
T Consensus 397 Kaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgi 436 (758)
T PRK11034 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARI 436 (758)
T ss_pred HHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCC
Confidence 88899999875432 2234569999999999887554
No 55
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.72 E-value=9.1e-17 Score=195.09 Aligned_cols=164 Identities=30% Similarity=0.440 Sum_probs=125.7
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh---------
Q 047690 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM--------- 396 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~--------- 396 (811)
+++.|++++|+.+.+++...+... ......+||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 359999999999999876422111 11123699999999999999999999999999999876432
Q ss_pred hhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc-----CC--------CC
Q 047690 397 EMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG-----FG--------TT 463 (811)
Q Consensus 397 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg-----~~--------~~ 463 (811)
..|+|....++...|..+....| ||||||||.+.+... + . ..+.||..||. |. ..
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~-----~---~---~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR-----G---D---PASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC-----C---C---HHHHHHHhcCHHhcCccccccCCceecc
Confidence 24677778888888988877666 899999999974321 1 1 12344444442 21 12
Q ss_pred CcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHH
Q 047690 464 AGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYL 510 (811)
Q Consensus 464 ~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l 510 (811)
+++++|+|||.++.++++|++ ||+ .|.++.|+.+++.+|++.++
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 578999999999999999999 995 89999999999999999887
No 56
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.71 E-value=3.2e-16 Score=164.65 Aligned_cols=214 Identities=21% Similarity=0.316 Sum_probs=169.0
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhc
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVG 401 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG 401 (811)
+-+|+|.+|++++|+.|.-++..-+... ...-.+||+||||.|||+||..+|+|+|+.+-..++.-+.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le----- 89 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE----- 89 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc-----
Confidence 5689999999999999999988644332 2456799999999999999999999999999999887652
Q ss_pred CchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC--------C--------CCc
Q 047690 402 VGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG--------T--------TAG 465 (811)
Q Consensus 402 ~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~--------~--------~~~ 465 (811)
.+..+-.++..... .+|+||||||.+.+ ..+.++.. .|+.|. + -..
T Consensus 90 -K~gDlaaiLt~Le~--~DVLFIDEIHrl~~------------~vEE~LYp---aMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 90 -KPGDLAAILTNLEE--GDVLFIDEIHRLSP------------AVEEVLYP---AMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred -ChhhHHHHHhcCCc--CCeEEEehhhhcCh------------hHHHHhhh---hhhheeEEEEEccCCccceEeccCCC
Confidence 12334444443322 37999999999943 22334433 344431 1 135
Q ss_pred EEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHH
Q 047690 466 VVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEA 545 (811)
Q Consensus 466 VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneA 545 (811)
+.+|+||.+...|...|+. ||....++..++.++..+|+....+.+.+..+.+. ...+|+++.| |++=..+|+++.
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~-a~eIA~rSRG-TPRIAnRLLrRV 227 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEA-ALEIARRSRG-TPRIANRLLRRV 227 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHH-HHHHHHhccC-CcHHHHHHHHHH
Confidence 8899999999999999999 99999999999999999999999988887777655 4679999887 788778888888
Q ss_pred HHHHHHcCCCccCHHHHHHHHHHH
Q 047690 546 ALIAARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 546 al~Aar~~~~~It~ed~~~Al~rv 569 (811)
.-.|.-++...|+.+-...|+...
T Consensus 228 RDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 228 RDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHh
Confidence 888888888999999999998765
No 57
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.70 E-value=2.3e-16 Score=172.55 Aligned_cols=205 Identities=25% Similarity=0.366 Sum_probs=140.7
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhc
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVG 401 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG 401 (811)
+-+|+|++|++....+-.-+-..+.. .-..+++||||||||||+||+.||+..+.+|..+|+...
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~---------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~------ 84 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA---------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS------ 84 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc---------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc------
Confidence 45899999999876443222222222 223468999999999999999999999999999988553
Q ss_pred CchhHHHHHHHHHHhcC----CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC-CC-
Q 047690 402 VGPSRVRNLFQEARQCA----PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN-RP- 475 (811)
Q Consensus 402 ~~~~~vr~lF~~A~~~a----P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN-~p- 475 (811)
+-+.+|.+|+.|++.. ..||||||||.+-+.+ ...||--|+ +..|++|+||. .|
T Consensus 85 -gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q---------------QD~lLp~vE----~G~iilIGATTENPs 144 (436)
T COG2256 85 -GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ---------------QDALLPHVE----NGTIILIGATTENPS 144 (436)
T ss_pred -cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh---------------hhhhhhhhc----CCeEEEEeccCCCCC
Confidence 5688999999996543 3699999999993322 123444443 46688887763 44
Q ss_pred cccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhh--ccCCC---C-CchhhhHHHhhCCCCcHHHHHHHHHHHHH--
Q 047690 476 DILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKK--IKLDH---E-PSYYSQRLAALTPGFAGADIANVCNEAAL-- 547 (811)
Q Consensus 476 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~--~~l~~---~-~d~~l~~LA~~t~GfSgaDL~~LvneAal-- 547 (811)
-.|.+||++ |. +++.+.+.+.++..++++..+.. .++.. . .+.....++..+.| |.+.++|-.-+
T Consensus 145 F~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~LE~~~ 217 (436)
T COG2256 145 FELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNLLELAA 217 (436)
T ss_pred eeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHHHHHHH
Confidence 479999999 77 68899999999999999884433 23331 0 12234667777765 66666653322
Q ss_pred HHHHcCCCccCHHHHHHHHHHH
Q 047690 548 IAARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 548 ~Aar~~~~~It~ed~~~Al~rv 569 (811)
.+++.+. .++.+++++.+.+.
T Consensus 218 ~~~~~~~-~~~~~~l~~~l~~~ 238 (436)
T COG2256 218 LSAEPDE-VLILELLEEILQRR 238 (436)
T ss_pred HhcCCCc-ccCHHHHHHHHhhh
Confidence 2222222 44588888887664
No 58
>PRK04195 replication factor C large subunit; Provisional
Probab=99.70 E-value=4.5e-15 Score=171.56 Aligned_cols=206 Identities=23% Similarity=0.308 Sum_probs=148.5
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhc
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVG 401 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG 401 (811)
+.+|+||+|++++++.|.+++....+ ..+++++||+||||||||++|+++|++++.+++.+++++....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~--- 78 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA--- 78 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH---
Confidence 45799999999999999999875331 1337889999999999999999999999999999999875421
Q ss_pred CchhHHHHHHHHHHh------cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCC
Q 047690 402 VGPSRVRNLFQEARQ------CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRP 475 (811)
Q Consensus 402 ~~~~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~p 475 (811)
..++.+...+.. ..+.||+|||+|.+.... + ...++.|+..++. ....+|.+||.+
T Consensus 79 ---~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~--------d---~~~~~aL~~~l~~----~~~~iIli~n~~ 140 (482)
T PRK04195 79 ---DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE--------D---RGGARAILELIKK----AKQPIILTANDP 140 (482)
T ss_pred ---HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc--------c---hhHHHHHHHHHHc----CCCCEEEeccCc
Confidence 233333333322 246799999999984311 1 1234445555542 223455667888
Q ss_pred cccch-hhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCC
Q 047690 476 DILDK-ALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGEN 554 (811)
Q Consensus 476 d~LDp-ALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~ 554 (811)
..+++ .|++ |+ ..|.|+.|+..++..+|+..+...++..+.+ .++.|+..+.| |++.+++.....+ .+.
T Consensus 141 ~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~e-aL~~Ia~~s~G----DlR~ain~Lq~~a--~~~ 210 (482)
T PRK04195 141 YDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDE-ALKEIAERSGG----DLRSAINDLQAIA--EGY 210 (482)
T ss_pred cccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----CHHHHHHHHHHHh--cCC
Confidence 88777 5555 44 6899999999999999999998877765543 36778887754 8888888765533 355
Q ss_pred CccCHHHHHHHH
Q 047690 555 SQVTMEHFEAAI 566 (811)
Q Consensus 555 ~~It~ed~~~Al 566 (811)
..|+.+++....
T Consensus 211 ~~it~~~v~~~~ 222 (482)
T PRK04195 211 GKLTLEDVKTLG 222 (482)
T ss_pred CCCcHHHHHHhh
Confidence 678888887654
No 59
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.2e-15 Score=175.10 Aligned_cols=203 Identities=18% Similarity=0.266 Sum_probs=145.9
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCC----------------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGV---------------- 385 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gv---------------- 385 (811)
+.+|+||+|++.+++.|...+. ..++|.++||+||||||||++|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~-----------~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~ 78 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALK-----------KNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACR 78 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHH
Confidence 4689999999999888887665 2346778999999999999999999998764
Q ss_pred --------CeEEeechhhhhhhhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHH
Q 047690 386 --------PFLSISGSDFMEMFVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQL 453 (811)
Q Consensus 386 --------pfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqL 453 (811)
.++.++++. ..+-..+|.+.+.+... ...||||||+|.+.. ..++.|
T Consensus 79 ~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~---------------~a~~~L 137 (472)
T PRK14962 79 SIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK---------------EAFNAL 137 (472)
T ss_pred HHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH---------------HHHHHH
Confidence 234443321 12234566666655432 246999999999832 245667
Q ss_pred HHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCC
Q 047690 454 LVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGF 533 (811)
Q Consensus 454 L~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~Gf 533 (811)
+..++. ....+++|.+|+.+..+++++++ |+ ..+.+..++.++...+++..+...+...+.+. +..|+..+.|
T Consensus 138 Lk~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~ea-l~~Ia~~s~G- 210 (472)
T PRK14962 138 LKTLEE--PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREA-LSFIAKRASG- 210 (472)
T ss_pred HHHHHh--CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhCC-
Confidence 777775 34567777777778899999998 88 48999999999999999999887666554443 5778877754
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 047690 534 AGADIANVCNEAALIAARGENSQVTMEHFEAAID 567 (811)
Q Consensus 534 SgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~ 567 (811)
..+++.+.+..+... .+ ..||.+++..++.
T Consensus 211 dlR~aln~Le~l~~~---~~-~~It~e~V~~~l~ 240 (472)
T PRK14962 211 GLRDALTMLEQVWKF---SE-GKITLETVHEALG 240 (472)
T ss_pred CHHHHHHHHHHHHHh---cC-CCCCHHHHHHHHc
Confidence 455555555543322 12 3499999998874
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.1e-15 Score=173.90 Aligned_cols=208 Identities=20% Similarity=0.242 Sum_probs=151.2
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCe-------E-Eeech
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF-------L-SISGS 393 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpf-------i-~vs~s 393 (811)
+.+|+||+|++.+...|...+. ..+++..+||+||||||||++|+++|+.+++.- . .-+|.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~-----------~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALK-----------SGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 4689999999999999888776 234567799999999999999999999886531 0 00111
Q ss_pred hhhhh----------hhcCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc
Q 047690 394 DFMEM----------FVGVGPSRVRNLFQEARQ----CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG 459 (811)
Q Consensus 394 ~~~~~----------~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg 459 (811)
++... -...+...+|++.+.+.. ....|+||||+|.|. ....|.||..|+.
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls---------------~~A~NALLKtLEE 147 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT---------------DQSFNALLKTLEE 147 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC---------------HHHHHHHHHHhhc
Confidence 11100 011233456766665542 234599999999992 2357788888876
Q ss_pred CCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHH
Q 047690 460 FGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIA 539 (811)
Q Consensus 460 ~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~ 539 (811)
+..++++|.+|+.+..|.++|++ |+ ..+.|..++.++..+.|+..+...++..+.+. +..|++.+.| +.+|.-
T Consensus 148 --Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eA-L~~Ia~~S~G-d~RdAL 220 (484)
T PRK14956 148 --PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEG-LFWIAKKGDG-SVRDML 220 (484)
T ss_pred --CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-hHHHHH
Confidence 55688999899999999999999 88 47889999999999999999888776555443 5778888876 678888
Q ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 540 NVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 540 ~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
+++..+... ....|+.+++.+.+
T Consensus 221 ~lLeq~i~~----~~~~it~~~V~~~l 243 (484)
T PRK14956 221 SFMEQAIVF----TDSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHh----CCCCcCHHHHHHHh
Confidence 888776433 23358988887665
No 61
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.2e-15 Score=177.40 Aligned_cols=207 Identities=18% Similarity=0.236 Sum_probs=150.3
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCe------E----Eee
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF------L----SIS 391 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpf------i----~vs 391 (811)
..+|+||+|++.+++.|.+.+. ..++++.+||+||+|||||++|+.+|+.+++.- + .-.
T Consensus 12 PqtFddVIGQe~vv~~L~~al~-----------~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~ 80 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALE-----------QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ 80 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHH-----------hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc
Confidence 4589999999999999998876 235677899999999999999999999887610 0 001
Q ss_pred chh-----------hhhhh--hcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHH
Q 047690 392 GSD-----------FMEMF--VGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLL 454 (811)
Q Consensus 392 ~s~-----------~~~~~--vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL 454 (811)
|.. +++.- ...+-..+|++.+.+... ...|+||||+|.|. ....|.||
T Consensus 81 C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls---------------~~AaNALL 145 (700)
T PRK12323 81 CRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT---------------NHAFNAML 145 (700)
T ss_pred cHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC---------------HHHHHHHH
Confidence 111 11100 012345677777665432 24699999999992 23568888
Q ss_pred HhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCc
Q 047690 455 VEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFA 534 (811)
Q Consensus 455 ~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfS 534 (811)
..|+. ...++++|.+||.++.|.+.|++ |+ .++.|..++.++..+.|+..+...++..+.+ .+..|++.+.| +
T Consensus 146 KTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~e-AL~~IA~~A~G-s 218 (700)
T PRK12323 146 KTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVN-ALRLLAQAAQG-S 218 (700)
T ss_pred Hhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 88886 45678888889999999999999 88 6899999999999999998887766655433 24667877766 7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 047690 535 GADIANVCNEAALIAARGENSQVTMEHFEAA 565 (811)
Q Consensus 535 gaDL~~LvneAal~Aar~~~~~It~ed~~~A 565 (811)
.++..++++++... +...|+.+++...
T Consensus 219 ~RdALsLLdQaia~----~~~~It~~~V~~~ 245 (700)
T PRK12323 219 MRDALSLTDQAIAY----SAGNVSEEAVRGM 245 (700)
T ss_pred HHHHHHHHHHHHHh----ccCCcCHHHHHHH
Confidence 88888888876532 2345777666554
No 62
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.67 E-value=2.4e-15 Score=170.04 Aligned_cols=241 Identities=19% Similarity=0.301 Sum_probs=159.1
Q ss_pred CCCccccc-cccchH--hHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-----CCCeEEee
Q 047690 320 KNKVYFRD-VAGCDE--AKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSIS 391 (811)
Q Consensus 320 ~~~v~f~d-V~G~ee--ak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs 391 (811)
.+..+|++ ++|.+. +...++++.. +|. ....+++||||||||||+|++++++++ +..+++++
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~~---~~~-------~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVAE---NPG-------KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHHh---CcC-------ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 35678999 556543 3333333332 221 224568999999999999999999976 67899999
Q ss_pred chhhhhhhhcCch-hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEe
Q 047690 392 GSDFMEMFVGVGP-SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIA 470 (811)
Q Consensus 392 ~s~~~~~~vG~~~-~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIa 470 (811)
+.+|...+..... ..+..+....+ .+.+|+|||||.+..+. ..+..+..++.. .......+||+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~----------~~~~~l~~~~n~---~~~~~~~iiit 238 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE----------RTQEEFFHTFNA---LHENGKQIVLT 238 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH----------HHHHHHHHHHHH---HHHCCCCEEEe
Confidence 9988765443211 11222222222 35799999999984321 112222233322 22233456777
Q ss_pred cCCCCcc---cchhhcCCCCcce--eeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHH
Q 047690 471 GTNRPDI---LDKALLRPGRFDR--QITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEA 545 (811)
Q Consensus 471 aTN~pd~---LDpALlRpGRFdr--~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneA 545 (811)
++..|.. +++.+.+ ||.. .+.++.||.++|.+||+..++..++..+.+. ++.||....+ +.++|..+++..
T Consensus 239 s~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~r~l~~~l~~l 314 (405)
T TIGR00362 239 SDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEV-LEFIAKNIRS-NVRELEGALNRL 314 (405)
T ss_pred cCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHH
Confidence 7666665 5677887 8864 7999999999999999999988776655443 5778877765 789999999987
Q ss_pred HHHHHHcCCCccCHHHHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhhHHHHhh
Q 047690 546 ALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWF 601 (811)
Q Consensus 546 al~Aar~~~~~It~ed~~~Al~rvi~g~e~~~~~l~~~e~~~va~hEaGhAvv~~~ 601 (811)
...|.. .+..||.+.+.+++...+.. .++.+..+++-++|+.++
T Consensus 315 ~~~a~~-~~~~it~~~~~~~L~~~~~~-----------~~~~it~~~I~~~Va~~~ 358 (405)
T TIGR00362 315 LAYASL-TGKPITLELAKEALKDLLRA-----------KKKEITIENIQEVVAKYY 358 (405)
T ss_pred HHHHHH-hCCCCCHHHHHHHHHHhccc-----------cCCCCCHHHHHHHHHHHc
Confidence 666654 44669999999998764321 123356667777776554
No 63
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=2.8e-15 Score=176.30 Aligned_cols=207 Identities=18% Similarity=0.258 Sum_probs=148.8
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCe--EEee---chhhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF--LSIS---GSDFM 396 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpf--i~vs---~s~~~ 396 (811)
.-+|+||+|++.+++.|+..+. ..++++.+||+||+|||||++|+++|+.+++.- -... |..+.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr 80 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHH
Confidence 4589999999999999998875 345677889999999999999999999886521 0001 11111
Q ss_pred hh-------h------hcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc
Q 047690 397 EM-------F------VGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG 459 (811)
Q Consensus 397 ~~-------~------vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg 459 (811)
.. + ...+-..++++++.+... ...|+||||+|.|. ....|.||..|+.
T Consensus 81 ~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT---------------~~A~NALLKtLEE 145 (830)
T PRK07003 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT---------------NHAFNAMLKTLEE 145 (830)
T ss_pred HHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC---------------HHHHHHHHHHHHh
Confidence 10 0 012334577777765432 24699999999982 1346777877776
Q ss_pred CCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHH
Q 047690 460 FGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIA 539 (811)
Q Consensus 460 ~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~ 539 (811)
...++++|.+||.+..|.+.|++ |+ .+|.|..++.++..++|+..+...++..+.+. +..|++.+.| +.++..
T Consensus 146 --PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eA-L~lIA~~A~G-smRdAL 218 (830)
T PRK07003 146 --PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQA-LRLLARAAQG-SMRDAL 218 (830)
T ss_pred --cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CHHHHH
Confidence 45578888899999999999999 88 68999999999999999999887776554433 5778888876 677888
Q ss_pred HHHHHHHHHHHHcCCCccCHHHHHHH
Q 047690 540 NVCNEAALIAARGENSQVTMEHFEAA 565 (811)
Q Consensus 540 ~LvneAal~Aar~~~~~It~ed~~~A 565 (811)
+++.++..+. ...|+.+++...
T Consensus 219 sLLdQAia~~----~~~It~~~V~~~ 240 (830)
T PRK07003 219 SLTDQAIAYS----ANEVTETAVSGM 240 (830)
T ss_pred HHHHHHHHhc----cCCcCHHHHHHH
Confidence 8877765332 334666665543
No 64
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.66 E-value=2.5e-15 Score=172.24 Aligned_cols=222 Identities=18% Similarity=0.289 Sum_probs=150.8
Q ss_pred CCCcccccc-ccchH--hHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-----CCCeEEee
Q 047690 320 KNKVYFRDV-AGCDE--AKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSIS 391 (811)
Q Consensus 320 ~~~v~f~dV-~G~ee--ak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs 391 (811)
.+..+|++. +|... +...++++.. +|. ....+++||||||||||+|++++++++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~---~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAE---NPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHh---CcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 456789994 45432 4455554433 221 123568999999999999999999987 56789999
Q ss_pred chhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEec
Q 047690 392 GSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAG 471 (811)
Q Consensus 392 ~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaa 471 (811)
+.+|...+..........-|..... .+++|+|||||.+..++ ..+.. ++..++........+||++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~----------~~~~~---l~~~~n~l~~~~~~iiits 251 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE----------RTQEE---FFHTFNALHEAGKQIVLTS 251 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH----------HHHHH---HHHHHHHHHHCCCcEEEEC
Confidence 9998766543322111122322222 46799999999984321 11222 2222222222334577777
Q ss_pred CCCCcc---cchhhcCCCCcc--eeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHH
Q 047690 472 TNRPDI---LDKALLRPGRFD--RQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAA 546 (811)
Q Consensus 472 TN~pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAa 546 (811)
+..|.. +++.|.+ ||. ..+.+..|+.++|.+||+..+...++..+.+. ++.||....| +.++|..+++...
T Consensus 252 ~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~R~l~~~l~~l~ 327 (450)
T PRK00149 252 DRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEV-LEFIAKNITS-NVRELEGALNRLI 327 (450)
T ss_pred CCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHcCcCC-CHHHHHHHHHHHH
Confidence 767665 6788888 896 47999999999999999999987665555443 5778887765 7889999999876
Q ss_pred HHHHHcCCCccCHHHHHHHHHHHh
Q 047690 547 LIAARGENSQVTMEHFEAAIDRVI 570 (811)
Q Consensus 547 l~Aar~~~~~It~ed~~~Al~rvi 570 (811)
..+... +..||.+.+.+++..++
T Consensus 328 ~~~~~~-~~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 328 AYASLT-GKPITLELAKEALKDLL 350 (450)
T ss_pred HHHHhh-CCCCCHHHHHHHHHHhh
Confidence 665544 45699999999998764
No 65
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.66 E-value=4.4e-15 Score=164.80 Aligned_cols=225 Identities=23% Similarity=0.226 Sum_probs=152.6
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcC---------CCeEEeec
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESG---------VPFLSISG 392 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~g---------vpfi~vs~ 392 (811)
....++++|.++.+++|..++..... ...+.+++|+||||||||++++++++++. +++++++|
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 34456899999999988888764221 13456799999999999999999997642 57888888
Q ss_pred hhhhh----------hhh--cC-------c-hhHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHH
Q 047690 393 SDFME----------MFV--GV-------G-PSRVRNLFQEARQ-CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLN 451 (811)
Q Consensus 393 s~~~~----------~~v--G~-------~-~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLn 451 (811)
....+ ... +. . .+.+..++..... ..+.||+|||+|.+... . ...+.
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~---------~---~~~L~ 150 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD---------D---DDLLY 150 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC---------C---cHHHH
Confidence 64321 111 11 1 1223445554432 44789999999999511 1 12455
Q ss_pred HHHHhhhc-CCCCCcEEEEecCCCCc---ccchhhcCCCCcc-eeeeccCCCHHHHHHHHHHHHhhccCC--CCCc--hh
Q 047690 452 QLLVEMDG-FGTTAGVVVIAGTNRPD---ILDKALLRPGRFD-RQITIDKPDIKGRDQIFQVYLKKIKLD--HEPS--YY 522 (811)
Q Consensus 452 qLL~emDg-~~~~~~VIVIaaTN~pd---~LDpALlRpGRFd-r~I~v~~Pd~~eR~eIL~~~l~~~~l~--~~~d--~~ 522 (811)
+|+...+. .....++.+|+++|.++ .+++.+.+ ||. ..+++++++.++..+|++.++...... .+.+ ..
T Consensus 151 ~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ 228 (365)
T TIGR02928 151 QLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPL 228 (365)
T ss_pred hHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHH
Confidence 55544221 12235788899999876 57888877 775 679999999999999999998631111 1111 11
Q ss_pred hhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 047690 523 SQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 523 l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rv 569 (811)
+..++..+.| ..+.+.++|+.|+..|..++...|+.+|+..|++.+
T Consensus 229 i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 229 CAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 2334444455 456667789999998988888899999999999876
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=5.9e-15 Score=164.76 Aligned_cols=208 Identities=18% Similarity=0.224 Sum_probs=146.8
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEE--------eech
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLS--------ISGS 393 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~--------vs~s 393 (811)
+.+|+||+|++.+++.+...+. ..++|..+||+||||||||++|+++|+++.+.... .+|.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~-----------~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~ 80 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLS-----------LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80 (363)
T ss_pred CCchhhccChHHHHHHHHHHHH-----------cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 4689999999999999888775 23467789999999999999999999987642110 0111
Q ss_pred hhhhh-----h--h---cCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc
Q 047690 394 DFMEM-----F--V---GVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG 459 (811)
Q Consensus 394 ~~~~~-----~--v---G~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg 459 (811)
++... + - ......++.+.+.+... ...|++|||+|.+. ....+.||..++.
T Consensus 81 ~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~---------------~~a~naLLk~lEe 145 (363)
T PRK14961 81 EIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS---------------RHSFNALLKTLEE 145 (363)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC---------------HHHHHHHHHHHhc
Confidence 11100 0 0 02234566666654322 23599999999982 1345667777775
Q ss_pred CCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHH
Q 047690 460 FGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIA 539 (811)
Q Consensus 460 ~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~ 539 (811)
+...+.+|.+|+.++.+.+.+++ |+ ..+++++|+.++..++++..++..+...+.+ .+..++..+.| +.+++.
T Consensus 146 --~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~-al~~ia~~s~G-~~R~al 218 (363)
T PRK14961 146 --PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEY-ALKLIAYHAHG-SMRDAL 218 (363)
T ss_pred --CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHH
Confidence 34456667677778889999988 77 5899999999999999999988876544433 34667877765 777887
Q ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 540 NVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 540 ~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
++++.+... +...|+.+++.+++
T Consensus 219 ~~l~~~~~~----~~~~It~~~v~~~l 241 (363)
T PRK14961 219 NLLEHAINL----GKGNINIKNVTDML 241 (363)
T ss_pred HHHHHHHHh----cCCCCCHHHHHHHH
Confidence 877765432 45679999888876
No 67
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=5.2e-15 Score=170.78 Aligned_cols=211 Identities=16% Similarity=0.258 Sum_probs=155.7
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeE------------E
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL------------S 389 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi------------~ 389 (811)
+-+|+|++|++.+++.|...+. ..+++.++||+||||||||++|+++|+.+++.-. .
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~-----------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTIL-----------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 4689999999999998887664 2456789999999999999999999998865211 1
Q ss_pred eechhhhhh--------h--hcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHH
Q 047690 390 ISGSDFMEM--------F--VGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLV 455 (811)
Q Consensus 390 vs~s~~~~~--------~--vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~ 455 (811)
-+|..+.+. - ...+...++.+++.+... ...|++|||+|.+. ...++.|+.
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls---------------~~a~naLLk 150 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS---------------KGAFNALLK 150 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC---------------HHHHHHHHH
Confidence 112111110 0 112446788888777543 23599999999982 235677777
Q ss_pred hhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcH
Q 047690 456 EMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAG 535 (811)
Q Consensus 456 emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSg 535 (811)
.|+. +...+++|.+|+.++.+.+++++ |+ ..+.+..++.++...+++..++..+...+.+. +..++..+.| +.
T Consensus 151 ~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eA-L~~Ia~~s~G-sl 223 (507)
T PRK06645 151 TLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEA-LRIIAYKSEG-SA 223 (507)
T ss_pred HHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CH
Confidence 7775 45677888788888899999988 77 57889999999999999999998776555443 5778888876 88
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 536 ADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 536 aDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
+++.++++.+...+.. ....||.+++.+.+
T Consensus 224 R~al~~Ldkai~~~~~-~~~~It~~~V~~ll 253 (507)
T PRK06645 224 RDAVSILDQAASMSAK-SDNIISPQVINQML 253 (507)
T ss_pred HHHHHHHHHHHHhhcc-CCCCcCHHHHHHHH
Confidence 8999999887665432 23469998888765
No 68
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.65 E-value=2.9e-15 Score=182.92 Aligned_cols=219 Identities=21% Similarity=0.302 Sum_probs=153.8
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----------CCCeEEee
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSIS 391 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----------gvpfi~vs 391 (811)
+-++++++|.++...++.+++. ... ..+++|+||||||||++|+.+|... +..++.++
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~---r~~---------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILL---RRR---------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHh---cCC---------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 4589999999986555555432 222 2478999999999999999999875 24577787
Q ss_pred chhhh--hhhhcCchhHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEE
Q 047690 392 GSDFM--EMFVGVGPSRVRNLFQEARQ-CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVV 468 (811)
Q Consensus 392 ~s~~~--~~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIV 468 (811)
.+.+. ..|.|..+.+++.+|..++. ..++||||||||.+...++.. +..+ .. |.|+-.+ .++.+.+
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---~~~d-~~---n~Lkp~l----~~G~l~~ 319 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---GQGD-AA---NLLKPAL----ARGELRT 319 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---cccc-HH---HHhhHHh----hCCCeEE
Confidence 77765 35788889999999999875 468999999999997654321 1222 11 2222222 3567999
Q ss_pred EecCCCCc-----ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCC---CchhhhHHHhhCCCCc-----H
Q 047690 469 IAGTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHE---PSYYSQRLAALTPGFA-----G 535 (811)
Q Consensus 469 IaaTN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~---~d~~l~~LA~~t~GfS-----g 535 (811)
|+||+..+ .+|+||.| ||. .|.|+.|+.+++..||+.+.+.+..... .+..+..++.++.+|- +
T Consensus 320 IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LP 396 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLP 396 (852)
T ss_pred EEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCc
Confidence 99998653 48999999 995 8999999999999998777665432222 2334577777777664 4
Q ss_pred HHHHHHHHHHHHHHHH-cCCCccCHHHHHHHH
Q 047690 536 ADIANVCNEAALIAAR-GENSQVTMEHFEAAI 566 (811)
Q Consensus 536 aDL~~LvneAal~Aar-~~~~~It~ed~~~Al 566 (811)
.....|+++|+..... .....+..++++..+
T Consensus 397 DKAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 397 DKAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred cHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 5667788887655443 344455555555444
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=5.2e-15 Score=172.55 Aligned_cols=202 Identities=16% Similarity=0.266 Sum_probs=150.0
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC---------------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP--------------- 386 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp--------------- 386 (811)
+.+|+||+|++.+++.|...+. ..+++..+||+||||||||++|+++|+.+++.
T Consensus 11 PktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~ 79 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK 79 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHH
Confidence 4689999999999999988876 34567889999999999999999999988652
Q ss_pred ---------eEEeechhhhhhhhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHH
Q 047690 387 ---------FLSISGSDFMEMFVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQL 453 (811)
Q Consensus 387 ---------fi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqL 453 (811)
++.+++++ ..+...+|.+...+... ...|++|||+|.|.. ...+.|
T Consensus 80 ~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~---------------~A~NAL 138 (702)
T PRK14960 80 AVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST---------------HSFNAL 138 (702)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------HHHHHH
Confidence 22222221 12335677776655322 346999999999821 245677
Q ss_pred HHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCC
Q 047690 454 LVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGF 533 (811)
Q Consensus 454 L~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~Gf 533 (811)
+..|+. ...++.+|.+|+.+..+.+.+++ |+ ..+.|..++.++..+.++..+.+.+...+.+. +..|+..+.|
T Consensus 139 LKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eA-L~~IA~~S~G- 211 (702)
T PRK14960 139 LKTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDA-IWQIAESAQG- 211 (702)
T ss_pred HHHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-
Confidence 777775 34566777777888888888887 77 58999999999999999999988776655543 5778888765
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 534 AGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 534 SgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
+.+++.+++..+... +...|+.+++...+
T Consensus 212 dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 212 SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 788888887766432 35569988887754
No 70
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1.1e-14 Score=171.56 Aligned_cols=202 Identities=21% Similarity=0.311 Sum_probs=149.6
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC---------------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP--------------- 386 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp--------------- 386 (811)
+.+|+||+|++.+++.|...+. ..+++..+||+||+|||||++|+++|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~-----------~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALD-----------LGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 4689999999999999988876 23467788999999999999999999988663
Q ss_pred ---------eEEeechhhhhhhhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHH
Q 047690 387 ---------FLSISGSDFMEMFVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQL 453 (811)
Q Consensus 387 ---------fi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqL 453 (811)
++.+++++ ..+-..+|++.+.+... ...|+||||+|.|. ....|.|
T Consensus 81 ~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls---------------~~a~NAL 139 (647)
T PRK07994 81 EIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS---------------RHSFNAL 139 (647)
T ss_pred HHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC---------------HHHHHHH
Confidence 12222111 11234567776655422 23599999999982 2457888
Q ss_pred HHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCC
Q 047690 454 LVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGF 533 (811)
Q Consensus 454 L~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~Gf 533 (811)
|..|+. +..++++|.+|+.+..|.+.|++ |+ ..++|..++.++..+.|+..+...++..+.+ .+..|+..+.|
T Consensus 140 LKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~-aL~~Ia~~s~G- 212 (647)
T PRK07994 140 LKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPR-ALQLLARAADG- 212 (647)
T ss_pred HHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 888886 45677777778888999999998 86 7899999999999999999887766555433 34677877766
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 534 AGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 534 SgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
+.++..+++..|... +...|+.+++...+
T Consensus 213 s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 213 SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 778888888766432 34458887777655
No 71
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=8.4e-15 Score=169.77 Aligned_cols=202 Identities=17% Similarity=0.234 Sum_probs=149.8
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC---------------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP--------------- 386 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp--------------- 386 (811)
+-+|+||+|++.+++.|...+. ..++|..+||+||||||||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~-----------~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 80 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALD-----------QQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHH-----------hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH
Confidence 4589999999999999998886 23567789999999999999999999988653
Q ss_pred ---------eEEeechhhhhhhhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHH
Q 047690 387 ---------FLSISGSDFMEMFVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQL 453 (811)
Q Consensus 387 ---------fi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqL 453 (811)
++.+++++ ..+-..+|++.+.+... ...|++|||+|.|. ....|.|
T Consensus 81 ~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls---------------~~a~naL 139 (509)
T PRK14958 81 EIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS---------------GHSFNAL 139 (509)
T ss_pred HHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC---------------HHHHHHH
Confidence 33333221 12345577777665431 23599999999982 1346778
Q ss_pred HHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCC
Q 047690 454 LVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGF 533 (811)
Q Consensus 454 L~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~Gf 533 (811)
|..|+. +..++++|.+|+.+..+.+.+++ |+ ..+++..++.++....++..++..+...+.+. +..++..+.|
T Consensus 140 Lk~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~a-l~~ia~~s~G- 212 (509)
T PRK14958 140 LKTLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAA-LDLLARAANG- 212 (509)
T ss_pred HHHHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-
Confidence 887776 34567777777888888888888 77 57889999999988889988888776555433 5677877765
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 534 AGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 534 SgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
+.+++.+++..+... +...||.+++...+
T Consensus 213 slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 213 SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 788888888876432 34568888888765
No 72
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.63 E-value=1.8e-14 Score=163.52 Aligned_cols=200 Identities=27% Similarity=0.388 Sum_probs=143.4
Q ss_pred CccccccccchHhHHH---HHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 322 KVYFRDVAGCDEAKQE---IMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 322 ~v~f~dV~G~eeak~e---L~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
+.+|+|++|++++... |..++. . ..+.++||+||||||||++|+++|+..+.+|+.+++...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~---~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIE---A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHH---c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 3579999999998776 666653 1 123479999999999999999999999999999988642
Q ss_pred hhcCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC-
Q 047690 399 FVGVGPSRVRNLFQEARQ----CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN- 473 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN- 473 (811)
+...++.+++.+.. ....||||||+|.+.. . ..+.|+..++. ..+++|++|+
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~------------~---~q~~LL~~le~----~~iilI~att~ 129 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK------------A---QQDALLPHVED----GTITLIGATTE 129 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH------------H---HHHHHHHHhhc----CcEEEEEeCCC
Confidence 33556777776642 2468999999999832 1 22344544442 3466666543
Q ss_pred -CCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhcc--C-CCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHH
Q 047690 474 -RPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIK--L-DHEPSYYSQRLAALTPGFAGADIANVCNEAALIA 549 (811)
Q Consensus 474 -~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~--l-~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~A 549 (811)
....++++|++ |+ ..+.+..++.++...+++..+.... + ..+ +..++.+++.+.| ..+.+.+++..++..
T Consensus 130 n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~G-d~R~aln~Le~~~~~- 203 (413)
T PRK13342 130 NPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANG-DARRALNLLELAALG- 203 (413)
T ss_pred ChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCC-CHHHHHHHHHHHHHc-
Confidence 34578999999 88 6899999999999999998876532 1 222 2235677777754 566666766665433
Q ss_pred HHcCCCccCHHHHHHHHHHH
Q 047690 550 ARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 550 ar~~~~~It~ed~~~Al~rv 569 (811)
...|+.+++..++...
T Consensus 204 ----~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 204 ----VDSITLELLEEALQKR 219 (413)
T ss_pred ----cCCCCHHHHHHHHhhh
Confidence 4579999999998764
No 73
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.5e-14 Score=166.07 Aligned_cols=202 Identities=18% Similarity=0.269 Sum_probs=153.6
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCC----------------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGV---------------- 385 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gv---------------- 385 (811)
+.+|+||+|++.+++.|+..+. ..++|.++||+||||||||++|+.+|+.+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~-----------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~ 77 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFT-----------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI 77 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH
Confidence 3689999999999998887765 3467889999999999999999999986543
Q ss_pred --------CeEEeechhhhhhhhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHH
Q 047690 386 --------PFLSISGSDFMEMFVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQL 453 (811)
Q Consensus 386 --------pfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqL 453 (811)
.++.+++++ ..+-..+|.+.+.+... ...|++|||+|.+. ...+|.|
T Consensus 78 ~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls---------------~~A~NaL 136 (491)
T PRK14964 78 SIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS---------------NSAFNAL 136 (491)
T ss_pred HHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC---------------HHHHHHH
Confidence 234444332 12345688887776532 24599999999982 2356788
Q ss_pred HHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCC
Q 047690 454 LVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGF 533 (811)
Q Consensus 454 L~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~Gf 533 (811)
|..|+. +...+++|.+|+.++.+.+.+++ |+ ..+.+..++.++..+.++..+.+.+...+.+. +..+++.+.|
T Consensus 137 LK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eA-L~lIa~~s~G- 209 (491)
T PRK14964 137 LKTLEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEES-LKLIAENSSG- 209 (491)
T ss_pred HHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-
Confidence 888886 44567777778888889999998 77 57899999999999999999988776655443 5678888865
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 534 AGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 534 SgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
+.+++.++++.+..++ ...||.+++.+.+
T Consensus 210 slR~alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 210 SMRNALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred CHHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 7888888888776543 2479999888754
No 74
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.62 E-value=1.2e-14 Score=166.04 Aligned_cols=221 Identities=16% Similarity=0.241 Sum_probs=146.8
Q ss_pred CCCccccccc-cchH--hHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-----CCCeEEee
Q 047690 320 KNKVYFRDVA-GCDE--AKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSIS 391 (811)
Q Consensus 320 ~~~v~f~dV~-G~ee--ak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs 391 (811)
.+..+|++.+ |.+. +...+.++ ..+|.. ..+++||||||||||+|++++++++ +..+++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~---~~~~~~--------~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEV---AKNPGR--------YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHH---HhCcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4678999977 5332 22333333 233321 3469999999999999999999975 46789999
Q ss_pred chhhhhhhhcCc-hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEe
Q 047690 392 GSDFMEMFVGVG-PSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIA 470 (811)
Q Consensus 392 ~s~~~~~~vG~~-~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIa 470 (811)
+.+|...+.... ...+.. |.......+.+|+|||++.+..+. ..+.. ++..++.+......+||+
T Consensus 168 ~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~----------~~q~e---lf~~~n~l~~~~k~iIit 233 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT----------GVQTE---LFHTFNELHDSGKQIVIC 233 (440)
T ss_pred HHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH----------HHHHH---HHHHHHHHHHcCCeEEEE
Confidence 999876654321 112222 333223357899999999884321 11111 222222222334467777
Q ss_pred cCCCCcc---cchhhcCCCCcc--eeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHH
Q 047690 471 GTNRPDI---LDKALLRPGRFD--RQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEA 545 (811)
Q Consensus 471 aTN~pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneA 545 (811)
+.+.|.. +++.+.+ ||. ..+.+.+||.+.|.+|++..+...++..+.+. +..||....| +.++|..+++..
T Consensus 234 sd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev-~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 234 SDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred CCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHhcccc-CHHHHHHHHHHH
Confidence 7677765 4566777 774 56789999999999999999987666554443 5778887765 788999998876
Q ss_pred HHHHHHcCCCccCHHHHHHHHHHHh
Q 047690 546 ALIAARGENSQVTMEHFEAAIDRVI 570 (811)
Q Consensus 546 al~Aar~~~~~It~ed~~~Al~rvi 570 (811)
...+... +..||.+.+.+++..++
T Consensus 310 ~~~~~~~-~~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 310 LVYKETT-GEEVDLKEAILLLKDFI 333 (440)
T ss_pred HHHHHHh-CCCCCHHHHHHHHHHHh
Confidence 5555443 46699999999998764
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=9.2e-15 Score=171.79 Aligned_cols=209 Identities=20% Similarity=0.293 Sum_probs=151.5
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeE--Eeec---h---
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL--SISG---S--- 393 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi--~vs~---s--- 393 (811)
+.+|+||+|++.+++.|+..+. ..++++++||+||+|||||++|+++|+.++++-. ...| .
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~-----------~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr 80 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALD-----------EGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHH
Confidence 4589999999999999998876 2356889999999999999999999998765311 0111 1
Q ss_pred --------hhhhh--hhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc
Q 047690 394 --------DFMEM--FVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG 459 (811)
Q Consensus 394 --------~~~~~--~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg 459 (811)
++++. -...+...+++++..+... ...||||||+|.|. ....+.||..|+.
T Consensus 81 ~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls---------------~~A~NALLKtLEE 145 (709)
T PRK08691 81 QIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS---------------KSAFNAMLKTLEE 145 (709)
T ss_pred HHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC---------------HHHHHHHHHHHHh
Confidence 11100 0122345678887765322 23699999999872 2346778888876
Q ss_pred CCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHH
Q 047690 460 FGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIA 539 (811)
Q Consensus 460 ~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~ 539 (811)
....+++|.+|+.+..+.+.+++ |+ ..+.|..++.++....|+..+...++..+.+. +..|++.+.| +.+++.
T Consensus 146 --Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eA-L~~Ia~~A~G-slRdAl 218 (709)
T PRK08691 146 --PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPA-LQLLGRAAAG-SMRDAL 218 (709)
T ss_pred --CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHHhCC-CHHHHH
Confidence 34567777788888889888887 77 57888899999999999999998776655443 5778877754 788888
Q ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 047690 540 NVCNEAALIAARGENSQVTMEHFEAAID 567 (811)
Q Consensus 540 ~LvneAal~Aar~~~~~It~ed~~~Al~ 567 (811)
+++..+... +...|+.+++...+.
T Consensus 219 nLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 219 SLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 888876543 245688888777653
No 76
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.5e-14 Score=173.00 Aligned_cols=192 Identities=19% Similarity=0.222 Sum_probs=139.4
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeE-----Ee---ech
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL-----SI---SGS 393 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi-----~v---s~s 393 (811)
+.+|+||+|++.+++.|+..+. ..+++..+||+||||||||++|+++|+.+++.-. .- +|-
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~-----------~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~ 80 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALT-----------QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH-----------hCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH
Confidence 4689999999999999888765 2356778899999999999999999999876411 00 111
Q ss_pred hhhhh-------hhc---CchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc
Q 047690 394 DFMEM-------FVG---VGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG 459 (811)
Q Consensus 394 ~~~~~-------~vG---~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg 459 (811)
.+.+. +-+ .+...+|.+...+... ...|+||||+|.|. ...+|.||..|+.
T Consensus 81 ~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT---------------~eAqNALLKtLEE 145 (944)
T PRK14949 81 EIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS---------------RSSFNALLKTLEE 145 (944)
T ss_pred HHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC---------------HHHHHHHHHHHhc
Confidence 11110 001 1234567766655321 23599999999992 3467888888886
Q ss_pred CCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHH
Q 047690 460 FGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIA 539 (811)
Q Consensus 460 ~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~ 539 (811)
+..++++|.+|+.+..|.+.|++ |+ .++.|..++.++..+.|+..+...++..+.+ .+..|+..+.| +.+++.
T Consensus 146 --PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~ede-AL~lIA~~S~G-d~R~AL 218 (944)
T PRK14949 146 --PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAE-ALTLLAKAANG-SMRDAL 218 (944)
T ss_pred --cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHH
Confidence 45567777778888889899998 87 6899999999999999999887765544433 35778888766 778888
Q ss_pred HHHHHHH
Q 047690 540 NVCNEAA 546 (811)
Q Consensus 540 ~LvneAa 546 (811)
++|..+.
T Consensus 219 nLLdQal 225 (944)
T PRK14949 219 SLTDQAI 225 (944)
T ss_pred HHHHHHH
Confidence 8888765
No 77
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.62 E-value=4.1e-14 Score=146.46 Aligned_cols=207 Identities=14% Similarity=0.193 Sum_probs=139.7
Q ss_pred CCCcccccccc--chHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechh
Q 047690 320 KNKVYFRDVAG--CDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSD 394 (811)
Q Consensus 320 ~~~v~f~dV~G--~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~ 394 (811)
....+|++.+. .+.+.+.+++++. ...+..++|+||||||||++|++++.++ +.++++++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 9 PDDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 34567888873 4556666666543 1235689999999999999999999876 57899999988
Q ss_pred hhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCC
Q 047690 395 FMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNR 474 (811)
Q Consensus 395 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~ 474 (811)
+.... ..++.... .+.+|+|||+|.+.. .......+..++..+.. ....+|++++..
T Consensus 77 ~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~----------~~~~~~~L~~~l~~~~~---~~~~iIits~~~ 133 (226)
T TIGR03420 77 LAQAD--------PEVLEGLE--QADLVCLDDVEAIAG----------QPEWQEALFHLYNRVRE---AGGRLLIAGRAA 133 (226)
T ss_pred HHHhH--------HHHHhhcc--cCCEEEEeChhhhcC----------ChHHHHHHHHHHHHHHH---cCCeEEEECCCC
Confidence 75432 23333322 246999999999832 11223344444443322 223455555545
Q ss_pred Ccccc---hhhcCCCCc--ceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHH
Q 047690 475 PDILD---KALLRPGRF--DRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIA 549 (811)
Q Consensus 475 pd~LD---pALlRpGRF--dr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~A 549 (811)
+..++ +.|.+ |+ ..++.++.|+.+++..+++.++.+.+...+.+. ++.|+... +-+.+++.++++++...+
T Consensus 134 ~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~-l~~L~~~~-~gn~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 134 PAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEV-ADYLLRHG-SRDMGSLMALLDALDRAS 209 (226)
T ss_pred hHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhc-cCCHHHHHHHHHHHHHHH
Confidence 54432 66776 66 478999999999999999998876665544443 57778754 458999999999876555
Q ss_pred HHcCCCccCHHHHHHHH
Q 047690 550 ARGENSQVTMEHFEAAI 566 (811)
Q Consensus 550 ar~~~~~It~ed~~~Al 566 (811)
.. .+..|+.+.+.+.+
T Consensus 210 ~~-~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 210 LA-AKRKITIPFVKEVL 225 (226)
T ss_pred HH-hCCCCCHHHHHHHh
Confidence 44 44579988887765
No 78
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.62 E-value=4e-14 Score=158.92 Aligned_cols=226 Identities=19% Similarity=0.167 Sum_probs=153.0
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-----CCCeEEeechhhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSISGSDFM 396 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs~s~~~ 396 (811)
....+.++|-++..++|...+..... ...|.+++|+||||||||++++.+++++ ++.+++++|....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 34567899999888888877753211 1235679999999999999999999876 5789999986432
Q ss_pred ----------hhhhc-------Cchh-HHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhh
Q 047690 397 ----------EMFVG-------VGPS-RVRNLFQEARQ-CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEM 457 (811)
Q Consensus 397 ----------~~~vG-------~~~~-~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~em 457 (811)
....+ .... .+..+.+.... ..+.||+|||+|.+.... ....+..|+..+
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-----------~~~~l~~l~~~~ 166 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-----------GNDVLYSLLRAH 166 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-----------CchHHHHHHHhh
Confidence 11212 1111 22223333222 346899999999996211 123566666666
Q ss_pred hcCCCCCcEEEEecCCCCc---ccchhhcCCCCcc-eeeeccCCCHHHHHHHHHHHHhhccCC-CCCchhhhHHHhhCCC
Q 047690 458 DGFGTTAGVVVIAGTNRPD---ILDKALLRPGRFD-RQITIDKPDIKGRDQIFQVYLKKIKLD-HEPSYYSQRLAALTPG 532 (811)
Q Consensus 458 Dg~~~~~~VIVIaaTN~pd---~LDpALlRpGRFd-r~I~v~~Pd~~eR~eIL~~~l~~~~l~-~~~d~~l~~LA~~t~G 532 (811)
+... ..++.+|+++|.++ .+++.+.+ ||. ..|.+++++.++..+|++.+++..... .-.+..++.+++.+.+
T Consensus 167 ~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~ 243 (394)
T PRK00411 167 EEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAR 243 (394)
T ss_pred hccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHH
Confidence 5543 23688888888654 46777766 563 578999999999999999988642111 1122234666666633
Q ss_pred C--cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 047690 533 F--AGADIANVCNEAALIAARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 533 f--SgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rv 569 (811)
. ..+.+.++|..|+..|..++...|+.+|+..|++++
T Consensus 244 ~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 244 EHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 2 345666889999889988888999999999999876
No 79
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=2.3e-14 Score=165.81 Aligned_cols=201 Identities=21% Similarity=0.312 Sum_probs=146.8
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC---------------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP--------------- 386 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp--------------- 386 (811)
+.+|+||+|++.+++.|+.++.. .++|..+||+||||||||++|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~ 78 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA 78 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH
Confidence 46899999999999999988862 3467778999999999999999999987531
Q ss_pred --------eEEeechhhhhhhhcCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHH
Q 047690 387 --------FLSISGSDFMEMFVGVGPSRVRNLFQEARQ----CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLL 454 (811)
Q Consensus 387 --------fi~vs~s~~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL 454 (811)
++.+++++ ..+...+|++.+.+.. ..+.||+|||+|.+. ...++.|+
T Consensus 79 i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls---------------~~a~naLL 137 (504)
T PRK14963 79 VRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS---------------KSAFNALL 137 (504)
T ss_pred HhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC---------------HHHHHHHH
Confidence 23333221 1233456766555443 235699999998772 24577888
Q ss_pred HhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCc
Q 047690 455 VEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFA 534 (811)
Q Consensus 455 ~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfS 534 (811)
..|+. ....+++|.+|+.+..+.+.+.+ |+ ..+.|..|+.++..+.++..++..++..+.+. +..++..+.| .
T Consensus 138 k~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~A-l~~ia~~s~G-d 210 (504)
T PRK14963 138 KTLEE--PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEA-LQLVARLADG-A 210 (504)
T ss_pred HHHHh--CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-C
Confidence 88876 34467777778888999999988 77 47999999999999999999988776655443 5677877765 5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 535 GADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 535 gaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
.+++.++++.+.. . ...||.+++...+
T Consensus 211 lR~aln~Lekl~~---~--~~~It~~~V~~~l 237 (504)
T PRK14963 211 MRDAESLLERLLA---L--GTPVTRKQVEEAL 237 (504)
T ss_pred HHHHHHHHHHHHh---c--CCCCCHHHHHHHH
Confidence 5666666665432 1 3469988888764
No 80
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.61 E-value=3.4e-14 Score=155.69 Aligned_cols=207 Identities=20% Similarity=0.260 Sum_probs=136.6
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcC-----CCeEEeechhhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESG-----VPFLSISGSDFM 396 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~g-----vpfi~vs~s~~~ 396 (811)
+.+|++++|++++++.|..++.. .. ..++||+||||||||++|+++++++. .++++++++++.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~-----------~~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS-----------PN-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC-----------CC-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 45799999999999999887751 11 22689999999999999999999873 467888988764
Q ss_pred hhh-------------hcC-------chhHHHHHHHHHHhc-----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHH
Q 047690 397 EMF-------------VGV-------GPSRVRNLFQEARQC-----APSIIFIDEIDAIGRARGRGGFSGANDERESTLN 451 (811)
Q Consensus 397 ~~~-------------vG~-------~~~~vr~lF~~A~~~-----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLn 451 (811)
... .+. ....++.+....... .+.+|+|||+|.+.. ... +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~------------~~~---~ 143 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE------------DAQ---Q 143 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH------------HHH---H
Confidence 321 010 012233333333222 245999999998821 222 3
Q ss_pred HHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCC
Q 047690 452 QLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTP 531 (811)
Q Consensus 452 qLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~ 531 (811)
.|+..++.... ...+|.+|+.+..+.+.|.+ |+ ..+.+.+|+.++...+++..+++.+...+.+ .++.++..+.
T Consensus 144 ~L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-al~~l~~~~~ 217 (337)
T PRK12402 144 ALRRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDD-GLELIAYYAG 217 (337)
T ss_pred HHHHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 34444444322 23344455556677777877 66 5789999999999999999998877665443 3577787774
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 047690 532 GFAGADIANVCNEAALIAARGENSQVTMEHFEAAID 567 (811)
Q Consensus 532 GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~ 567 (811)
| |+..+++.....+. ....||.+++.+++.
T Consensus 218 g----dlr~l~~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 218 G----DLRKAILTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred C----CHHHHHHHHHHHHH--cCCCCCHHHHHHHhC
Confidence 3 55555555444332 234799999988763
No 81
>PRK06893 DNA replication initiation factor; Validated
Probab=99.61 E-value=4.1e-14 Score=148.27 Aligned_cols=212 Identities=11% Similarity=0.079 Sum_probs=136.1
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFM 396 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~ 396 (811)
.+..+|++.+|.+... .+....... .. .....++||||||||||+|++|+|+++ +....+++..+..
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~~~------~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRKNF------ID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHHHHh------hc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 4567999999776432 111111111 11 112347999999999999999999985 4455666554321
Q ss_pred hhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 397 EMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 397 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
. ....+++..+ .+.+|+||||+.+.. ....+..+..++..+.. ....++|++++..|.
T Consensus 80 ~--------~~~~~~~~~~--~~dlLilDDi~~~~~----------~~~~~~~l~~l~n~~~~--~~~~illits~~~p~ 137 (229)
T PRK06893 80 Y--------FSPAVLENLE--QQDLVCLDDLQAVIG----------NEEWELAIFDLFNRIKE--QGKTLLLISADCSPH 137 (229)
T ss_pred h--------hhHHHHhhcc--cCCEEEEeChhhhcC----------ChHHHHHHHHHHHHHHH--cCCcEEEEeCCCChH
Confidence 1 1112233322 357999999999832 22333345555544321 122355667777777
Q ss_pred ccc---hhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcC
Q 047690 477 ILD---KALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGE 553 (811)
Q Consensus 477 ~LD---pALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~ 553 (811)
.++ +.|.+..+++..+.++.|+.++|.+||+.++...++..+.+. ++.|+...+| +.+.+.++++.... +....
T Consensus 138 ~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~-~~~~~ 214 (229)
T PRK06893 138 ALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEV-ANFLLKRLDR-DMHTLFDALDLLDK-ASLQA 214 (229)
T ss_pred HccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHH-HHHhc
Confidence 665 788884445678999999999999999999887666555443 5778888775 67788888876543 33344
Q ss_pred CCccCHHHHHHHH
Q 047690 554 NSQVTMEHFEAAI 566 (811)
Q Consensus 554 ~~~It~ed~~~Al 566 (811)
++.||...+++++
T Consensus 215 ~~~it~~~v~~~L 227 (229)
T PRK06893 215 QRKLTIPFVKEIL 227 (229)
T ss_pred CCCCCHHHHHHHh
Confidence 4579999888876
No 82
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4.6e-15 Score=171.47 Aligned_cols=235 Identities=23% Similarity=0.350 Sum_probs=157.7
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh---
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME--- 397 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~--- 397 (811)
..+-=+|-.|++++|+++.|++.-.+.... +.. .-++|+||||+|||+|++.||..++.+|+.++..-..+
T Consensus 318 ~~iLd~dHYGLekVKeRIlEyLAV~~l~~~---~kG---pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAE 391 (782)
T COG0466 318 EKILDKDHYGLEKVKERILEYLAVQKLTKK---LKG---PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAE 391 (782)
T ss_pred HHHhcccccCchhHHHHHHHHHHHHHHhcc---CCC---cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHH
Confidence 345556889999999999998875332221 111 23789999999999999999999999999998754432
Q ss_pred ------hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCC----CchHHHHHHHHHHHhhhcCCCCCcEE
Q 047690 398 ------MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSG----ANDERESTLNQLLVEMDGFGTTAGVV 467 (811)
Q Consensus 398 ------~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~----~~~e~~~tLnqLL~emDg~~~~~~VI 467 (811)
-|+|..+.++-+-..+|....| +++|||||.++..-..+..++ .+++.+..+..-.-+++ ..-+.|+
T Consensus 392 IRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~--yDLS~Vm 468 (782)
T COG0466 392 IRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVP--YDLSKVM 468 (782)
T ss_pred hccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCc--cchhheE
Confidence 2999999999999999999999 899999999965322111000 01122222211111111 1345799
Q ss_pred EEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHh-----hccCCCCC-chhhhHHHhhCCCCc-------
Q 047690 468 VIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLK-----KIKLDHEP-SYYSQRLAALTPGFA------- 534 (811)
Q Consensus 468 VIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~-----~~~l~~~~-d~~l~~LA~~t~GfS------- 534 (811)
+|+|+|..+.++..|+. |. ..|++.-++.++..+|.+.||= ..++.... ...-+.|-.....||
T Consensus 469 FiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~ 545 (782)
T COG0466 469 FIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRN 545 (782)
T ss_pred EEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhH
Confidence 99999999999999999 88 5999999999999999999873 33343221 111122222222222
Q ss_pred -HHHHHHHHHHHHHHHHHcCCC---ccCHHHHHHHHH
Q 047690 535 -GADIANVCNEAALIAARGENS---QVTMEHFEAAID 567 (811)
Q Consensus 535 -gaDL~~LvneAal~Aar~~~~---~It~ed~~~Al~ 567 (811)
-++|..+|+.++..-...... .|+..++..-+.
T Consensus 546 LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG 582 (782)
T COG0466 546 LEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLG 582 (782)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhC
Confidence 256777888776655443332 366666666553
No 83
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.60 E-value=1.2e-14 Score=177.90 Aligned_cols=169 Identities=21% Similarity=0.365 Sum_probs=129.2
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----------CCCeEEee
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSIS 391 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----------gvpfi~vs 391 (811)
+-++++|+|.++....+.+++. ... ..+++|+||||||||++|+++|..+ +.+++.++
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~---r~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQ---RRT---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHh---cCC---------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 4578999999986555555443 222 2468999999999999999999987 77899998
Q ss_pred chhhh--hhhhcCchhHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEE
Q 047690 392 GSDFM--EMFVGVGPSRVRNLFQEARQ-CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVV 468 (811)
Q Consensus 392 ~s~~~--~~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIV 468 (811)
.+.++ .+|.|..+.+++.+|..+.. ..|+||||||||.|.+.+... +.. .....+...| .++.+.+
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~---~~~-d~~~~lkp~l-------~~g~l~~ 310 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAM-DAGNMLKPAL-------ARGELHC 310 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc---cch-hHHHHhcchh-------hcCCCeE
Confidence 88876 45888899999999998644 568999999999997654321 222 2223333222 4578999
Q ss_pred EecCCCCc-----ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCC
Q 047690 469 IAGTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLD 516 (811)
Q Consensus 469 IaaTN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~ 516 (811)
|++|+..+ .+|+++.| ||+ .|.++.|+.+++..||+.+..++...
T Consensus 311 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~ 360 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELH 360 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccC
Confidence 99999877 48999999 997 68899999999999999887665443
No 84
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=3.7e-14 Score=166.35 Aligned_cols=202 Identities=21% Similarity=0.326 Sum_probs=150.9
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC---------------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP--------------- 386 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp--------------- 386 (811)
+.+|+||+|++.+++.|+..+.. .++++.+||+||+|||||++|+.+|+.++++
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~ 80 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHH
Confidence 46899999999999999888762 3457789999999999999999999987542
Q ss_pred ---------eEEeechhhhhhhhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHH
Q 047690 387 ---------FLSISGSDFMEMFVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQL 453 (811)
Q Consensus 387 ---------fi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqL 453 (811)
++.++++. +.+...+|++...+... ...|++|||+|.|. ....|.|
T Consensus 81 ~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt---------------~~a~naL 139 (559)
T PRK05563 81 AITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS---------------TGAFNAL 139 (559)
T ss_pred HHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC---------------HHHHHHH
Confidence 22222211 23445678887776532 23599999999982 2357788
Q ss_pred HHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCC
Q 047690 454 LVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGF 533 (811)
Q Consensus 454 L~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~Gf 533 (811)
|..++. +..++++|.+|+.++.+.+.+++ |+. .+.|..|+.++....++..++..++..+.+. +..++..+.|
T Consensus 140 LKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~a-l~~ia~~s~G- 212 (559)
T PRK05563 140 LKTLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEA-LRLIARAAEG- 212 (559)
T ss_pred HHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-
Confidence 888876 45567777777888999999988 874 6889999999999999999988776555433 5677887766
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 534 AGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 534 SgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
+.+++.+++..+...+ ...||.+++..++
T Consensus 213 ~~R~al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 213 GMRDALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred CHHHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 7888888887765442 4568888877654
No 85
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.60 E-value=4.1e-14 Score=156.38 Aligned_cols=204 Identities=21% Similarity=0.332 Sum_probs=148.4
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC--------------
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP-------------- 386 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp-------------- 386 (811)
.+.+|+|++|++++++.|.+.+.. .+.|..+||+||||+|||++|+++|+.+..+
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 357899999999999999987752 3457789999999999999999999986432
Q ss_pred ----------eEEeechhhhhhhhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHH
Q 047690 387 ----------FLSISGSDFMEMFVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQ 452 (811)
Q Consensus 387 ----------fi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnq 452 (811)
++.+++.+ ..+...++.+++.+... ...||+|||+|.+. ....+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~---------------~~~~~~ 136 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS---------------KSAFNA 136 (355)
T ss_pred HHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC---------------HHHHHH
Confidence 22222211 12334577787776532 23599999999882 134677
Q ss_pred HHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCC
Q 047690 453 LLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPG 532 (811)
Q Consensus 453 LL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~G 532 (811)
|+..++. +...+++|.+|+.++.+.+++++ |+ ..+.++.|+.++..++++.+++..+...+.+ .+..++..+.|
T Consensus 137 Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~-a~~~l~~~~~g 210 (355)
T TIGR02397 137 LLKTLEE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDE-ALELIARAADG 210 (355)
T ss_pred HHHHHhC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 7777765 34567777778888888899988 77 5789999999999999999998877654433 34667777755
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 047690 533 FAGADIANVCNEAALIAARGENSQVTMEHFEAAID 567 (811)
Q Consensus 533 fSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~ 567 (811)
+.+.+.+.++.+...+ ...||.+|+++++.
T Consensus 211 -~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 211 -SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred -ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 6667777776655442 24599999988763
No 86
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.60 E-value=2e-14 Score=175.80 Aligned_cols=186 Identities=19% Similarity=0.311 Sum_probs=138.0
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----------CCCeEEee
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSIS 391 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----------gvpfi~vs 391 (811)
.-.++.|+|.++..+.+.+++. .+.+.+++|+||||||||++|+++|.+. +.+++.++
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3468999999988888887754 2235689999999999999999999975 47899999
Q ss_pred chhhh--hhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEE
Q 047690 392 GSDFM--EMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVI 469 (811)
Q Consensus 392 ~s~~~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVI 469 (811)
.+.++ ..|.|..+.+++.+|+.+....++||||||||.|...+... +. ......+... + .+..+.+|
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~-~~~a~lLkp~---l----~rg~l~~I 311 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GA-IDAANILKPA---L----ARGELQCI 311 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---Cc-ccHHHHhHHH---H----hCCCcEEE
Confidence 98887 46788889999999999988889999999999997654321 11 1122222222 2 35678999
Q ss_pred ecCCCCc-----ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhh----ccCCCCCchhhhHHHhhCCCCc
Q 047690 470 AGTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKK----IKLDHEPSYYSQRLAALTPGFA 534 (811)
Q Consensus 470 aaTN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~----~~l~~~~d~~l~~LA~~t~GfS 534 (811)
++|+..+ ..|+++.+ ||. .|.++.|+.++...|++..... .++.. .+..+..++.++.+|.
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i-~deal~~i~~ls~~yi 381 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSI-SDKALEAAAKLSDQYI 381 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccC
Confidence 9999764 47899999 996 5899999999999998865433 22222 2233566666666654
No 87
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=3.3e-14 Score=167.17 Aligned_cols=208 Identities=17% Similarity=0.234 Sum_probs=149.3
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCe------E-------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF------L------- 388 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpf------i------- 388 (811)
+.+|+||+|++.+++.|...+. ..+++..+||+||+|||||++|+++|+.+++.- .
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~-----------~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALT-----------QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 3589999999999999998876 335677889999999999999999999886510 0
Q ss_pred Eeechhh--------hhhh--hcCchhHHHHHHHHHHhcC----CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHH
Q 047690 389 SISGSDF--------MEMF--VGVGPSRVRNLFQEARQCA----PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLL 454 (811)
Q Consensus 389 ~vs~s~~--------~~~~--vG~~~~~vr~lF~~A~~~a----P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL 454 (811)
.-+|..+ .+.- ...+-..+|++.+.+.... -.|++|||+|.|. ....|.||
T Consensus 81 C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls---------------~~a~NaLL 145 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT---------------NTAFNAML 145 (618)
T ss_pred cHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC---------------HHHHHHHH
Confidence 0011111 1110 0123346777777654322 2599999999982 23467788
Q ss_pred HhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCc
Q 047690 455 VEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFA 534 (811)
Q Consensus 455 ~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfS 534 (811)
..|+. ....+++|.+|+.+..+.+.+++ |+ .+++|..++.++..+.|+..+.+.+...+.+. +..|+..+.| +
T Consensus 146 KtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~A-L~~La~~s~G-s 218 (618)
T PRK14951 146 KTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQA-LRLLARAARG-S 218 (618)
T ss_pred Hhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-C
Confidence 87776 45567777777888888888888 77 68999999999999999999888776655433 5778887776 7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 535 GADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 535 gaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
.+++.+++..+... +...|+.+++...+
T Consensus 219 lR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 219 MRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred HHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 88888887765543 34568888887654
No 88
>PLN03025 replication factor C subunit; Provisional
Probab=99.59 E-value=4.3e-14 Score=155.11 Aligned_cols=199 Identities=20% Similarity=0.207 Sum_probs=134.9
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcC-----CCeEEeechhhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESG-----VPFLSISGSDFM 396 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~g-----vpfi~vs~s~~~ 396 (811)
+.+|+||+|++++++.|+.++.. ...| ++||+||||||||++|+++|+++. ..++.++.++..
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~ 76 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD-----------GNMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR 76 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc-----------CCCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc
Confidence 46899999999999998887651 1233 589999999999999999999873 246666666532
Q ss_pred hhhhcCchhHHHHHHHHHHh-------cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEE
Q 047690 397 EMFVGVGPSRVRNLFQEARQ-------CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVI 469 (811)
Q Consensus 397 ~~~vG~~~~~vr~lF~~A~~-------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVI 469 (811)
+...+++....... ..+.||+|||+|.+.. ..+ +.|+..|+.+.. ...+|
T Consensus 77 ------~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~------------~aq---~aL~~~lE~~~~--~t~~i 133 (319)
T PLN03025 77 ------GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS------------GAQ---QALRRTMEIYSN--TTRFA 133 (319)
T ss_pred ------cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH------------HHH---HHHHHHHhcccC--CceEE
Confidence 12234443332111 2356999999999832 122 444444554322 34455
Q ss_pred ecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHH
Q 047690 470 AGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIA 549 (811)
Q Consensus 470 aaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~A 549 (811)
.+||.+..+.++|++ |+ ..++|+.|+.++....|+..+++.++..+.+. +..++..+.| |++.++|.....+
T Consensus 134 l~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~-l~~i~~~~~g----DlR~aln~Lq~~~ 205 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEG-LEAIIFTADG----DMRQALNNLQATH 205 (319)
T ss_pred EEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC----CHHHHHHHHHHHH
Confidence 677888888889998 77 57999999999999999999988776655443 5677776654 6666655433222
Q ss_pred HHcCCCccCHHHHHHH
Q 047690 550 ARGENSQVTMEHFEAA 565 (811)
Q Consensus 550 ar~~~~~It~ed~~~A 565 (811)
.+...|+.+++...
T Consensus 206 --~~~~~i~~~~v~~~ 219 (319)
T PLN03025 206 --SGFGFVNQENVFKV 219 (319)
T ss_pred --hcCCCCCHHHHHHH
Confidence 23456888887654
No 89
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.59 E-value=1.3e-13 Score=143.67 Aligned_cols=203 Identities=12% Similarity=0.154 Sum_probs=137.4
Q ss_pred CCCccccccc--cchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechh
Q 047690 320 KNKVYFRDVA--GCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSD 394 (811)
Q Consensus 320 ~~~v~f~dV~--G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~ 394 (811)
..+.+|++++ +.+.+...+.++.. +...+.+++|+||||||||+||+++++++ +.+++++++.+
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 4567899977 33556565555543 22335679999999999999999999875 77899999887
Q ss_pred hhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCc-EEEEecCC
Q 047690 395 FMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAG-VVVIAGTN 473 (811)
Q Consensus 395 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~-VIVIaaTN 473 (811)
+.+.+ . ....+.+|+|||+|.+.. .....+..++..+. .... +++++++.
T Consensus 81 ~~~~~------------~--~~~~~~~liiDdi~~l~~------------~~~~~L~~~~~~~~---~~~~~~vl~~~~~ 131 (227)
T PRK08903 81 PLLAF------------D--FDPEAELYAVDDVERLDD------------AQQIALFNLFNRVR---AHGQGALLVAGPA 131 (227)
T ss_pred hHHHH------------h--hcccCCEEEEeChhhcCc------------hHHHHHHHHHHHHH---HcCCcEEEEeCCC
Confidence 64321 1 112356999999998721 12333444444332 2334 34454444
Q ss_pred CCc--ccchhhcCCCCc--ceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHH
Q 047690 474 RPD--ILDKALLRPGRF--DRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIA 549 (811)
Q Consensus 474 ~pd--~LDpALlRpGRF--dr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~A 549 (811)
.|. .+.+.|.+ || ...+.+++|+.+++..+++.+....++..+.+. ++.++...+| +.+++.++++.....|
T Consensus 132 ~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~a-l~~L~~~~~g-n~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 132 APLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEV-PDYLLTHFRR-DMPSLMALLDALDRYS 207 (227)
T ss_pred CHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 332 34567776 66 468999999999999999988877666655443 5778875554 7889999998754444
Q ss_pred HHcCCCccCHHHHHHHHH
Q 047690 550 ARGENSQVTMEHFEAAID 567 (811)
Q Consensus 550 ar~~~~~It~ed~~~Al~ 567 (811)
. ..++.||...+.+++.
T Consensus 208 ~-~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 208 L-EQKRPVTLPLLREMLA 224 (227)
T ss_pred H-HhCCCCCHHHHHHHHh
Confidence 3 4557899999888874
No 90
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.3e-14 Score=164.67 Aligned_cols=209 Identities=19% Similarity=0.243 Sum_probs=148.8
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeE--Eee---chhhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL--SIS---GSDFM 396 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi--~vs---~s~~~ 396 (811)
+.+|+||+|++.+++.|...+. ..++++.+||+||||||||++|+++|+.+++..- .-. |..+.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~-----------~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALE-----------QQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHH-----------cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 3589999999999999888876 2346778899999999999999999998865311 001 11111
Q ss_pred h-----------h--hhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc
Q 047690 397 E-----------M--FVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG 459 (811)
Q Consensus 397 ~-----------~--~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg 459 (811)
. . -...+-..+|++...+... ...|++|||+|.+. ....|.||..++.
T Consensus 81 ~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls---------------~~a~naLLK~LEe 145 (527)
T PRK14969 81 EIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS---------------KSAFNAMLKTLEE 145 (527)
T ss_pred HHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC---------------HHHHHHHHHHHhC
Confidence 0 0 0012335677777766432 23599999999982 2356778888876
Q ss_pred CCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHH
Q 047690 460 FGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIA 539 (811)
Q Consensus 460 ~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~ 539 (811)
+...+++|.+|+.+..+.+.+++ |+ ..++|..++.++..+.+...+...+...+.+ .+..++..+.| +.+++.
T Consensus 146 --pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~-al~~la~~s~G-slr~al 218 (527)
T PRK14969 146 --PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDAT-ALQLLARAAAG-SMRDAL 218 (527)
T ss_pred --CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHH
Confidence 44567777777778888888887 77 6899999999999999988888766554433 24667777654 678888
Q ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 047690 540 NVCNEAALIAARGENSQVTMEHFEAAID 567 (811)
Q Consensus 540 ~LvneAal~Aar~~~~~It~ed~~~Al~ 567 (811)
++++.+... +...|+.+++...+.
T Consensus 219 ~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 219 SLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 888876543 355688888877653
No 91
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.58 E-value=5.9e-14 Score=153.08 Aligned_cols=202 Identities=20% Similarity=0.272 Sum_probs=132.3
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhc
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVG 401 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG 401 (811)
+.+|+|++|++++++.++.++. ....|..+||+||||+|||++|++++++.+.+++.+++++ . . ..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~-~-~~ 82 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVK-----------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C-R-ID 82 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHh-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c-c-HH
Confidence 4689999999999999998876 2335667788999999999999999999999999999876 1 1 11
Q ss_pred CchhHHHHHHHHHH-hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccch
Q 047690 402 VGPSRVRNLFQEAR-QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDK 480 (811)
Q Consensus 402 ~~~~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDp 480 (811)
.....+........ ...+++|+|||+|.+.. .+....+..+ ++.. ..++.+|.+||.++.+++
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~~L~~~---le~~--~~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 83 FVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-----------ADAQRHLRSF---MEAY--SKNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHHHHHHHhhcccCCCeEEEEECcccccC-----------HHHHHHHHHH---HHhc--CCCceEEEEcCChhhchH
Confidence 11111222111111 12468999999998721 1223344444 3432 345677888999999999
Q ss_pred hhcCCCCcceeeeccCCCHHHHHHHHHHHHhhc-------cCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcC
Q 047690 481 ALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKI-------KLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGE 553 (811)
Q Consensus 481 ALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~-------~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~ 553 (811)
++++ ||. .+.++.|+.+++.++++.++... +...+.+ .+..++....| |+..+++.....+.
T Consensus 147 ~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~-al~~l~~~~~~----d~r~~l~~l~~~~~--- 215 (316)
T PHA02544 147 PLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK-VLAALVKKNFP----DFRRTINELQRYAS--- 215 (316)
T ss_pred HHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCC----CHHHHHHHHHHHHc---
Confidence 9999 884 78999999999998877654432 2222211 23555554443 55666555443332
Q ss_pred CCccCHHHHHH
Q 047690 554 NSQVTMEHFEA 564 (811)
Q Consensus 554 ~~~It~ed~~~ 564 (811)
...++.+++..
T Consensus 216 ~~~i~~~~l~~ 226 (316)
T PHA02544 216 TGKIDAGILSE 226 (316)
T ss_pred cCCCCHHHHHH
Confidence 24577666554
No 92
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.58 E-value=3.3e-14 Score=174.39 Aligned_cols=202 Identities=21% Similarity=0.317 Sum_probs=145.4
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----------CCCeEEee
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSIS 391 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----------gvpfi~vs 391 (811)
.-+++.++|.++....+.+++. .. ...+++|+||||||||++|+++|... +.+++.++
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~---r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLS---RR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHh---cC---------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 3478999999986555555543 22 23578999999999999999999875 67888888
Q ss_pred chhhh--hhhhcCchhHHHHHHHHHHhc-CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEE
Q 047690 392 GSDFM--EMFVGVGPSRVRNLFQEARQC-APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVV 468 (811)
Q Consensus 392 ~s~~~--~~~vG~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIV 468 (811)
.+.++ ..|.|..+.+++.+|..+... .|+||||||||.|.+.+... +.. . ..+.|...+ .+..+.+
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~~-d---~~~~Lk~~l----~~g~i~~ 305 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GAM-D---AGNMLKPAL----ARGELHC 305 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---chh-H---HHHHhchhh----hcCceEE
Confidence 88776 468888899999999988654 58999999999997543211 111 1 222222222 3567999
Q ss_pred EecCCCCc-----ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCC---chhhhHHHhhCCCCc-----H
Q 047690 469 IAGTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEP---SYYSQRLAALTPGFA-----G 535 (811)
Q Consensus 469 IaaTN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~---d~~l~~LA~~t~GfS-----g 535 (811)
|++|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+..++.....+ +..+...+.++.+|- |
T Consensus 306 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lP 382 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLP 382 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCc
Confidence 99999764 47999999 996 68999999999999999887776554443 223455566665553 4
Q ss_pred HHHHHHHHHHHHHH
Q 047690 536 ADIANVCNEAALIA 549 (811)
Q Consensus 536 aDL~~LvneAal~A 549 (811)
.-...|+++|+..+
T Consensus 383 dkAidlld~a~a~~ 396 (852)
T TIGR03346 383 DKAIDLIDEAAARI 396 (852)
T ss_pred hHHHHHHHHHHHHH
Confidence 45566777766544
No 93
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.57 E-value=8.8e-14 Score=162.19 Aligned_cols=223 Identities=17% Similarity=0.259 Sum_probs=147.8
Q ss_pred CCCccccccc-cchH--hHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-----CCCeEEee
Q 047690 320 KNKVYFRDVA-GCDE--AKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSIS 391 (811)
Q Consensus 320 ~~~v~f~dV~-G~ee--ak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs 391 (811)
....+|++.+ |... +...++.+++ ++. .....++|||++|||||+|++|+++++ +..+++++
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae---~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAE---APA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHh---Ccc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 3567899977 3332 2333444433 221 112348999999999999999999976 56889999
Q ss_pred chhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEec
Q 047690 392 GSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAG 471 (811)
Q Consensus 392 ~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaa 471 (811)
+.+|.+.+...........|.... ..+++|+||||+.+..+. ..+..+..++..+- .+...+||++
T Consensus 352 aeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke----------~tqeeLF~l~N~l~---e~gk~IIITS 417 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE----------STQEEFFHTFNTLH---NANKQIVLSS 417 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH----------HHHHHHHHHHHHHH---hcCCCEEEec
Confidence 999987765432222222344322 346899999999984321 11222223333322 2334455544
Q ss_pred CCCCc---ccchhhcCCCCcc--eeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHH
Q 047690 472 TNRPD---ILDKALLRPGRFD--RQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAA 546 (811)
Q Consensus 472 TN~pd---~LDpALlRpGRFd--r~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAa 546 (811)
...|. .+++.|.+ ||. ..+.|..||.+.|.+||+.++...++....+. ++.|+....+ +.++|..+++...
T Consensus 418 d~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eV-i~yLa~r~~r-nvR~LegaL~rL~ 493 (617)
T PRK14086 418 DRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEV-LEFIASRISR-NIRELEGALIRVT 493 (617)
T ss_pred CCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHH
Confidence 44444 46788988 884 56799999999999999999998877666544 5777877664 6788998888765
Q ss_pred HHHHHcCCCccCHHHHHHHHHHHhc
Q 047690 547 LIAARGENSQVTMEHFEAAIDRVIG 571 (811)
Q Consensus 547 l~Aar~~~~~It~ed~~~Al~rvi~ 571 (811)
..+.. .+..||.+.++++++.++.
T Consensus 494 a~a~~-~~~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 494 AFASL-NRQPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHHHh-hCCCCCHHHHHHHHHHhhc
Confidence 55554 3466999999999876544
No 94
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=9.8e-14 Score=161.28 Aligned_cols=202 Identities=16% Similarity=0.250 Sum_probs=144.6
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCC----------------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGV---------------- 385 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gv---------------- 385 (811)
+.+|+||+|++.+++.|...+. ..+++..+||+||||||||++|+++|+.+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~-----------~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~ 80 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALE-----------TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 4689999999999999888775 2346778999999999999999999997754
Q ss_pred --------CeEEeechhhhhhhhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHH
Q 047690 386 --------PFLSISGSDFMEMFVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQL 453 (811)
Q Consensus 386 --------pfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqL 453 (811)
.++.+++.. ..+-..++.+.+.+... ...|++|||+|.+. ....+.|
T Consensus 81 ~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls---------------~~a~naL 139 (546)
T PRK14957 81 AINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS---------------KQSFNAL 139 (546)
T ss_pred HHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc---------------HHHHHHH
Confidence 122222111 11234556666655432 24599999999982 2356677
Q ss_pred HHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCC
Q 047690 454 LVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGF 533 (811)
Q Consensus 454 L~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~Gf 533 (811)
|..|+. +...+++|.+|+.+..+.+.+++ |+ ..++|..++.++....|+..+++.+...+.+ .+..++..+. .
T Consensus 140 LK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~-Al~~Ia~~s~-G 212 (546)
T PRK14957 140 LKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQ-SLEYIAYHAK-G 212 (546)
T ss_pred HHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC-C
Confidence 777775 44566677667778888888888 77 6899999999999999999888776555443 2466777775 4
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 534 AGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 534 SgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
+.+++.++++.+...+ + ..|+.+++.+++
T Consensus 213 dlR~alnlLek~i~~~---~-~~It~~~V~~~l 241 (546)
T PRK14957 213 SLRDALSLLDQAISFC---G-GELKQAQIKQML 241 (546)
T ss_pred CHHHHHHHHHHHHHhc---c-CCCCHHHHHHHH
Confidence 6777777777665432 2 568888888754
No 95
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.4e-14 Score=166.42 Aligned_cols=186 Identities=27% Similarity=0.428 Sum_probs=138.4
Q ss_pred ccccccccccccccCCCccccccccchHhHHHHHHHHHH--hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 306 NIGKAHVTKVDKNAKNKVYFRDVAGCDEAKQEIMEFVHF--LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 306 ~~~~~~~~~~~~~~~~~v~f~dV~G~eeak~eL~e~v~~--Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.||+.+...++-.....+-=+|-.|++++|+++.|++.- |++.-+ .+-++|+||||+|||+++|.||..+
T Consensus 391 PWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~q--------GkIlCf~GPPGVGKTSI~kSIA~AL 462 (906)
T KOG2004|consen 391 PWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQ--------GKILCFVGPPGVGKTSIAKSIARAL 462 (906)
T ss_pred CCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCC--------CcEEEEeCCCCCCcccHHHHHHHHh
Confidence 345555444443333445556899999999999999875 443322 2347899999999999999999999
Q ss_pred CCCeEEeechhhhh---------hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHH
Q 047690 384 GVPFLSISGSDFME---------MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLL 454 (811)
Q Consensus 384 gvpfi~vs~s~~~~---------~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL 454 (811)
|..|+.+|...+.+ -|+|..+.++-+.++...-..| +++|||||.+++.-. | + ....|.++|
T Consensus 463 nRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~q-----G-D--PasALLElL 533 (906)
T KOG2004|consen 463 NRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQ-----G-D--PASALLELL 533 (906)
T ss_pred CCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCC-----C-C--hHHHHHHhc
Confidence 99999998654432 2899999999999998888888 999999999973111 1 1 122222222
Q ss_pred Hh----------hhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHh
Q 047690 455 VE----------MDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLK 511 (811)
Q Consensus 455 ~e----------mDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~ 511 (811)
.- ||---.-+.|++|||.|..+.++++|+. |+ ..|+++-+..++...|.+.||-
T Consensus 534 DPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 534 DPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred ChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 11 1111223579999999999999999999 88 5899999999999999999984
No 96
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=9.4e-14 Score=162.60 Aligned_cols=202 Identities=19% Similarity=0.295 Sum_probs=144.8
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC---------------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP--------------- 386 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp--------------- 386 (811)
+.+|+||+|++.+++.|...+. ..+++..+||+||||||||++|+++|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~-----------~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~ 80 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQ-----------ENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHH
Confidence 4689999999999999998876 23456789999999999999999999988653
Q ss_pred ---------eEEeechhhhhhhhcCchhHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHH
Q 047690 387 ---------FLSISGSDFMEMFVGVGPSRVRNLFQEAR----QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQL 453 (811)
Q Consensus 387 ---------fi~vs~s~~~~~~vG~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqL 453 (811)
++.++++. ..+-..++.+.+.+. .....||||||+|.|. ....+.|
T Consensus 81 ~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt---------------~~a~naL 139 (624)
T PRK14959 81 KVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT---------------REAFNAL 139 (624)
T ss_pred HHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC---------------HHHHHHH
Confidence 22232211 112234555443332 1234699999999982 2346777
Q ss_pred HHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCC
Q 047690 454 LVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGF 533 (811)
Q Consensus 454 L~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~Gf 533 (811)
|..|+. ....+++|.+||.+..+.+.|++ |+ ..|.|..++.++...+|+..+...+...+.+. +..++..+.|
T Consensus 140 Lk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~ea-l~lIA~~s~G- 212 (624)
T PRK14959 140 LKTLEE--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAA-VRLIARRAAG- 212 (624)
T ss_pred HHHhhc--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-
Confidence 877776 34567888888888888888888 77 47899999999999999998887765544433 4677777764
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 534 AGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 534 SgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
+.+++.+++++++ . .+...|+.+++..++
T Consensus 213 dlR~Al~lLeqll---~-~g~~~It~d~V~~~l 241 (624)
T PRK14959 213 SVRDSMSLLGQVL---A-LGESRLTIDGARGVL 241 (624)
T ss_pred CHHHHHHHHHHHH---H-hcCCCcCHHHHHHHh
Confidence 5566666666542 2 245579999998887
No 97
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=1.5e-13 Score=163.04 Aligned_cols=209 Identities=22% Similarity=0.335 Sum_probs=151.5
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeE---Eeechhhhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL---SISGSDFME 397 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi---~vs~s~~~~ 397 (811)
.+.+|+||+|++.+++.|+..+. ..++++.+||+||+|||||++|+++|+.+.++-. .-.|..+..
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~-----------~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIK-----------SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 35689999999999999998876 2356788999999999999999999998765321 112222211
Q ss_pred ---h----h--hc---CchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC
Q 047690 398 ---M----F--VG---VGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG 461 (811)
Q Consensus 398 ---~----~--vG---~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~ 461 (811)
. + -+ .+...+|.+.+.+... ...|++|||+|.|. ....+.||..|+.
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT---------------~~A~NALLKtLEE-- 144 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS---------------KSAFNALLKTLEE-- 144 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC---------------HHHHHHHHHHhhc--
Confidence 0 0 01 2345578887776543 24699999999982 1357788888886
Q ss_pred CCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHH
Q 047690 462 TTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANV 541 (811)
Q Consensus 462 ~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~L 541 (811)
+...+++|.+|+.++.|.+.+++ |+ ..+.|.+|+.++...+|+..+.+.++..+.+. +..+|..+.| +.+++.++
T Consensus 145 PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eA-l~~LA~lS~G-slR~Alsl 219 (725)
T PRK07133 145 PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNA-LKLIAKLSSG-SLRDALSI 219 (725)
T ss_pred CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CHHHHHHH
Confidence 45677888888889999999998 88 48999999999999999998887776554432 4667777765 66777777
Q ss_pred HHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 542 CNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 542 vneAal~Aar~~~~~It~ed~~~Al 566 (811)
++.+.... ...|+.+++..++
T Consensus 220 Lekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 220 AEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHhc----cCCCCHHHHHHHH
Confidence 77654432 3348888887754
No 98
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.3e-13 Score=161.66 Aligned_cols=209 Identities=16% Similarity=0.151 Sum_probs=146.9
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCe-------EE-eech
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF-------LS-ISGS 393 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpf-------i~-vs~s 393 (811)
+.+|+||+|++.+++.|+..+. ..++|..+||+||+|||||++|+++|+.+++.- -. -+|.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~-----------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 77 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALD-----------AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCV 77 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHH
Confidence 4689999999999999998876 235677889999999999999999999876421 00 0111
Q ss_pred hhh----------hhh--hcCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhh
Q 047690 394 DFM----------EMF--VGVGPSRVRNLFQEARQ----CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEM 457 (811)
Q Consensus 394 ~~~----------~~~--vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~em 457 (811)
.+. +.- ...+-..+|++.+.+.. ....|++|||+|.|. ....|.||..|
T Consensus 78 ~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt---------------~~A~NALLK~L 142 (584)
T PRK14952 78 ALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT---------------TAGFNALLKIV 142 (584)
T ss_pred HhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC---------------HHHHHHHHHHH
Confidence 110 000 00123456666555432 123599999999982 23567788888
Q ss_pred hcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHH
Q 047690 458 DGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGAD 537 (811)
Q Consensus 458 Dg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaD 537 (811)
+. ...++++|.+|+.++.|.+.|++ |+ .++.|..++.++..+.|+.+++..+...+.+. +..++..+. .+.++
T Consensus 143 EE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~a-l~~Ia~~s~-GdlR~ 215 (584)
T PRK14952 143 EE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAV-YPLVIRAGG-GSPRD 215 (584)
T ss_pred hc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcC-CCHHH
Confidence 86 45678888888888999999998 75 68999999999999999999988776554332 455666554 47788
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 538 IANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 538 L~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
+.++++.++..+ +...||.+++...+
T Consensus 216 aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 216 TLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 888888754332 34568888877654
No 99
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.55 E-value=1.2e-13 Score=156.30 Aligned_cols=182 Identities=27% Similarity=0.345 Sum_probs=118.4
Q ss_pred ccccc-cccchHhHHHHHHHHHH----hcCchhhhhcCCC-CCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 323 VYFRD-VAGCDEAKQEIMEFVHF----LKNPRKYEDLGAK-IPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 323 v~f~d-V~G~eeak~eL~e~v~~----Lk~p~~~~~lg~~-~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
-.+++ |+|++++|+.|...+.. +........ ... ...++||+||||||||++|+++|..+++||+.++++.+.
T Consensus 67 ~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~-~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~ 145 (412)
T PRK05342 67 AHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDD-DVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLT 145 (412)
T ss_pred HHHhhHeeChHHHHHHHHHHHHHHHHhhhccccccc-ccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 45554 89999999999766521 211110000 111 236799999999999999999999999999999999876
Q ss_pred h-hhhcCchhH-HHHHHHHH----HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC---------
Q 047690 397 E-MFVGVGPSR-VRNLFQEA----RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG--------- 461 (811)
Q Consensus 397 ~-~~vG~~~~~-vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~--------- 461 (811)
+ .|+|..... +..++..+ .+..++||||||||.+.+++...+ ...+...+.+.+.||..||+-.
T Consensus 146 ~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~-~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~ 224 (412)
T PRK05342 146 EAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPS-ITRDVSGEGVQQALLKILEGTVASVPPQGGR 224 (412)
T ss_pred cCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCC-cCCCcccHHHHHHHHHHHhcCeEEeCCCCCc
Confidence 4 577765443 34444432 344679999999999976632111 0111112346667777777521
Q ss_pred --CCCcEEEEecCCCCc----------------------------------------------------ccchhhcCCCC
Q 047690 462 --TTAGVVVIAGTNRPD----------------------------------------------------ILDKALLRPGR 487 (811)
Q Consensus 462 --~~~~VIVIaaTN~pd----------------------------------------------------~LDpALlRpGR 487 (811)
+....++|.|+|-.- -+.|+++ ||
T Consensus 225 ~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gR 302 (412)
T PRK05342 225 KHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GR 302 (412)
T ss_pred CcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CC
Confidence 112355666655400 0234444 49
Q ss_pred cceeeeccCCCHHHHHHHHHH
Q 047690 488 FDRQITIDKPDIKGRDQIFQV 508 (811)
Q Consensus 488 Fdr~I~v~~Pd~~eR~eIL~~ 508 (811)
+|..+.+...+.++...|+..
T Consensus 303 ld~iv~f~~L~~~~L~~Il~~ 323 (412)
T PRK05342 303 LPVVATLEELDEEALVRILTE 323 (412)
T ss_pred CCeeeecCCCCHHHHHHHHHH
Confidence 999999999999999999973
No 100
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.5e-13 Score=153.40 Aligned_cols=209 Identities=19% Similarity=0.280 Sum_probs=143.2
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhh------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDF------ 395 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~------ 395 (811)
+.+|+||+|++.+++.+...+.. .++|.++|||||||+|||++|+++|+.+..+.....+.++
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~ 81 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE 81 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE
Confidence 57899999999999988887751 3467889999999999999999999987543211111100
Q ss_pred hhhhhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEec
Q 047690 396 MEMFVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAG 471 (811)
Q Consensus 396 ~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaa 471 (811)
.+.....+...++.+++.+... .+.||+|||+|.+.. ..++.|+..++. +....++|.+
T Consensus 82 l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~le~--~~~~~~~Il~ 144 (367)
T PRK14970 82 LDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTLEE--PPAHAIFILA 144 (367)
T ss_pred eccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------HHHHHHHHHHhC--CCCceEEEEE
Confidence 0001112335677778776432 246999999998721 235667766665 3344556656
Q ss_pred CCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHH
Q 047690 472 TNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAAR 551 (811)
Q Consensus 472 TN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar 551 (811)
|+.+..+.+++.+ |+ ..+.+..|+.++...++...+.+.+...+.+ .++.++..+.| +.+.+.+.++....++
T Consensus 145 ~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~-al~~l~~~~~g-dlr~~~~~lekl~~y~-- 217 (367)
T PRK14970 145 TTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDD-ALHIIAQKADG-ALRDALSIFDRVVTFC-- 217 (367)
T ss_pred eCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHHHhc--
Confidence 6777888889887 66 4789999999999999999888877655443 35677777654 5666666666544433
Q ss_pred cCCCccCHHHHHHHHH
Q 047690 552 GENSQVTMEHFEAAID 567 (811)
Q Consensus 552 ~~~~~It~ed~~~Al~ 567 (811)
+.. ||.++++..+.
T Consensus 218 -~~~-it~~~v~~~~~ 231 (367)
T PRK14970 218 -GKN-ITRQAVTENLN 231 (367)
T ss_pred -CCC-CCHHHHHHHhC
Confidence 333 89888887653
No 101
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.55 E-value=4.6e-13 Score=140.93 Aligned_cols=207 Identities=14% Similarity=0.139 Sum_probs=136.4
Q ss_pred CCCccccccc-c-chHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechh
Q 047690 320 KNKVYFRDVA-G-CDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSD 394 (811)
Q Consensus 320 ~~~v~f~dV~-G-~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~ 394 (811)
.+..+|++.+ | ...+...+..+.. .+ .+..++||||||||||+|++++++++ +..+.+++..+
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~---~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALR---QE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4567888877 4 4555555555532 11 12478999999999999999999875 44566666655
Q ss_pred hhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCc-EEEEecCC
Q 047690 395 FMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAG-VVVIAGTN 473 (811)
Q Consensus 395 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~-VIVIaaTN 473 (811)
+... ..++++.... ..+|+|||||.+.. ....+..+..++..+- .+.+ .+++++++
T Consensus 84 ~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~----------~~~~~~~lf~l~n~~~---e~g~~~li~ts~~ 140 (235)
T PRK08084 84 RAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG----------DELWEMAIFDLYNRIL---ESGRTRLLITGDR 140 (235)
T ss_pred Hhhh--------hHHHHHHhhh--CCEEEEeChhhhcC----------CHHHHHHHHHHHHHHH---HcCCCeEEEeCCC
Confidence 4221 1122222222 25899999999832 2233334444443322 1232 46666667
Q ss_pred CCcc---cchhhcCCCCcc--eeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHH
Q 047690 474 RPDI---LDKALLRPGRFD--RQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALI 548 (811)
Q Consensus 474 ~pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~ 548 (811)
.|.. +.|.|++ |+. .++.+..|+.+++.++++.++...++..+.+. ++.|+...+| +.+.+.++++... .
T Consensus 141 ~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~-~ 215 (235)
T PRK08084 141 PPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLDR-EMRTLFMTLDQLD-R 215 (235)
T ss_pred ChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhhcC-CHHHHHHHHHHHH-H
Confidence 7666 5789998 885 68999999999999999998877666555443 5778888875 7788888888753 3
Q ss_pred HHHcCCCccCHHHHHHHH
Q 047690 549 AARGENSQVTMEHFEAAI 566 (811)
Q Consensus 549 Aar~~~~~It~ed~~~Al 566 (811)
++...++.||.+.+.+++
T Consensus 216 ~~l~~~~~it~~~~k~~l 233 (235)
T PRK08084 216 ASITAQRKLTIPFVKEIL 233 (235)
T ss_pred HHHhcCCCCCHHHHHHHH
Confidence 333345669998888876
No 102
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1e-13 Score=168.05 Aligned_cols=208 Identities=18% Similarity=0.157 Sum_probs=144.9
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCe-----EEeechhhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF-----LSISGSDFM 396 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpf-----i~vs~s~~~ 396 (811)
..+|+||+|++.+++.|+..+. ..++++.+||+||+|||||++|++||+.+++.- -+-.|..+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~-----------~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~ 79 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALD-----------SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCV 79 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHH
Confidence 4689999999999999988876 235677899999999999999999999886521 011121111
Q ss_pred hhhh------------c---CchhHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhh
Q 047690 397 EMFV------------G---VGPSRVRNLFQEAR----QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEM 457 (811)
Q Consensus 397 ~~~v------------G---~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~em 457 (811)
.+.. + .+-..+|++.+.+. .....|+||||+|.|. ....|.||..|
T Consensus 80 ~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt---------------~~a~NaLLK~L 144 (824)
T PRK07764 80 ALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT---------------PQGFNALLKIV 144 (824)
T ss_pred HHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC---------------HHHHHHHHHHH
Confidence 1100 0 12345565544432 2234699999999992 23567777777
Q ss_pred hcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHH
Q 047690 458 DGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGAD 537 (811)
Q Consensus 458 Dg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaD 537 (811)
+. ...++++|.+|+.++.|-+.|++ |+ .++.|..++.++..++|+..+++.++..+.+. +..++....| +.++
T Consensus 145 EE--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~ea-l~lLa~~sgG-dlR~ 217 (824)
T PRK07764 145 EE--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGV-LPLVIRAGGG-SVRD 217 (824)
T ss_pred hC--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CHHH
Confidence 76 44577777778888889899988 77 58899999999999999999888776544332 4556666655 7777
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 047690 538 IANVCNEAALIAARGENSQVTMEHFEAA 565 (811)
Q Consensus 538 L~~LvneAal~Aar~~~~~It~ed~~~A 565 (811)
+.++++..... .+...||.+++...
T Consensus 218 Al~eLEKLia~---~~~~~IT~e~V~al 242 (824)
T PRK07764 218 SLSVLDQLLAG---AGPEGVTYERAVAL 242 (824)
T ss_pred HHHHHHHHHhh---cCCCCCCHHHHHHH
Confidence 77777764422 23456888877654
No 103
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.4e-13 Score=162.03 Aligned_cols=201 Identities=16% Similarity=0.256 Sum_probs=148.6
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC---------------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP--------------- 386 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp--------------- 386 (811)
+.+|+||+|++.+++.|...+. ..++++.+|||||+|||||++|+++|+.+++.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~-----------~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~ 80 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAID-----------TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHH
Confidence 4689999999999999998876 23567889999999999999999999987542
Q ss_pred ---------eEEeechhhhhhhhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHH
Q 047690 387 ---------FLSISGSDFMEMFVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQL 453 (811)
Q Consensus 387 ---------fi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqL 453 (811)
++.+++.+ ..+-..++++.+.+... ...|++|||+|.|. ....|.|
T Consensus 81 ~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt---------------~~a~naL 139 (576)
T PRK14965 81 EITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS---------------TNAFNAL 139 (576)
T ss_pred HHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC---------------HHHHHHH
Confidence 22222211 12334677777666432 12499999999982 2346788
Q ss_pred HHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCC
Q 047690 454 LVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGF 533 (811)
Q Consensus 454 L~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~Gf 533 (811)
|..|+. +..++++|.+|+.++.|.+.|++ |+ ..+.|..++.++....+...+++.++..+.+. +..++..+.|
T Consensus 140 Lk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~a-l~~la~~a~G- 212 (576)
T PRK14965 140 LKTLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAA-LALVARKGDG- 212 (576)
T ss_pred HHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCC-
Confidence 888876 45678888888889999999998 77 48889999999999999988888776655443 5677877776
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 047690 534 AGADIANVCNEAALIAARGENSQVTMEHFEAA 565 (811)
Q Consensus 534 SgaDL~~LvneAal~Aar~~~~~It~ed~~~A 565 (811)
+.+++.+++..+...+ ...|+.+|+...
T Consensus 213 ~lr~al~~Ldqliay~----g~~It~edV~~l 240 (576)
T PRK14965 213 SMRDSLSTLDQVLAFC----GDAVGDDDVAEL 240 (576)
T ss_pred CHHHHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 6677777777654443 235888887765
No 104
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.55 E-value=1.3e-13 Score=165.19 Aligned_cols=208 Identities=23% Similarity=0.311 Sum_probs=139.2
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhc
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVG 401 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG 401 (811)
+-+|+|++|++........+...+... + ..++||+||||||||++|+++|+..+.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~--------~-~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~------ 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKAD--------R-VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA------ 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcC--------C-CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh------
Confidence 468999999999886433333333221 1 2368999999999999999999999999999887632
Q ss_pred CchhHHHHHHHHHHh-----cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC--C
Q 047690 402 VGPSRVRNLFQEARQ-----CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN--R 474 (811)
Q Consensus 402 ~~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN--~ 474 (811)
+.+.++..+..+.. ....+|||||||.+.. .. .+.|+..++ ...+++|++|+ .
T Consensus 89 -~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~------------~q---QdaLL~~lE----~g~IiLI~aTTenp 148 (725)
T PRK13341 89 -GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK------------AQ---QDALLPWVE----NGTITLIGATTENP 148 (725)
T ss_pred -hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH------------HH---HHHHHHHhc----CceEEEEEecCCCh
Confidence 12334555544421 2356999999999832 11 234444444 24567776654 3
Q ss_pred CcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhh-------ccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHH
Q 047690 475 PDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKK-------IKLDHEPSYYSQRLAALTPGFAGADIANVCNEAAL 547 (811)
Q Consensus 475 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~-------~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal 547 (811)
...+++++++ |+ ..+.+++++.+++..|++..+.. ..+..+. ..++.|++..+| ..+++.++++.|+.
T Consensus 149 ~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~d-eaL~~La~~s~G-D~R~lln~Le~a~~ 223 (725)
T PRK13341 149 YFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEP-EAEKHLVDVANG-DARSLLNALELAVE 223 (725)
T ss_pred HhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCH-HHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3468899998 65 57999999999999999998873 2222222 235778887754 56777777777654
Q ss_pred HHHHcCC--CccCHHHHHHHHHHH
Q 047690 548 IAARGEN--SQVTMEHFEAAIDRV 569 (811)
Q Consensus 548 ~Aar~~~--~~It~ed~~~Al~rv 569 (811)
.+..... ..|+.+++++++.+.
T Consensus 224 ~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 224 STPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred hcccCCCCceeccHHHHHHHHHHh
Confidence 3322221 238888888888663
No 105
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=2.4e-13 Score=156.87 Aligned_cols=208 Identities=20% Similarity=0.288 Sum_probs=145.8
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCC-------CeEE-eech
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGV-------PFLS-ISGS 393 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gv-------pfi~-vs~s 393 (811)
+.+|+||+|++.+++.|+..+. ..+++..+|||||+|+|||++|+.+|..+++ |+-. .+|.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~-----------~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~ 80 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVK-----------LQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHH
Confidence 4689999999999999988875 2345677899999999999999999998753 1111 1111
Q ss_pred hhhh-----hh-----hcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc
Q 047690 394 DFME-----MF-----VGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG 459 (811)
Q Consensus 394 ~~~~-----~~-----vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg 459 (811)
.+.. .+ ...+...+|.+.+.+... ...|++|||+|.+. ....+.|+..++.
T Consensus 81 ~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt---------------~~a~naLLk~LEe 145 (486)
T PRK14953 81 EIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT---------------KEAFNALLKTLEE 145 (486)
T ss_pred HHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC---------------HHHHHHHHHHHhc
Confidence 1110 00 012234466665555432 34699999999882 1245677777775
Q ss_pred CCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHH
Q 047690 460 FGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIA 539 (811)
Q Consensus 460 ~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~ 539 (811)
+...+++|.+|+.++.+.+++.+ |+. .+.+.+|+.++...+++.+++..++..+.+. +..++..+.| +.+++.
T Consensus 146 --pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~a-l~~La~~s~G-~lr~al 218 (486)
T PRK14953 146 --PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKA-LDLLAQASEG-GMRDAA 218 (486)
T ss_pred --CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CHHHHH
Confidence 34456666667778888889888 774 7899999999999999999998876655443 4677777765 567777
Q ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 540 NVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 540 ~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
++++.+... +...||.+++.+++
T Consensus 219 ~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 219 SLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHh----cCCCcCHHHHHHHh
Confidence 777766543 24468888888865
No 106
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=1.2e-13 Score=155.46 Aligned_cols=187 Identities=18% Similarity=0.288 Sum_probs=130.0
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCe----------------
Q 047690 324 YFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF---------------- 387 (811)
Q Consensus 324 ~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpf---------------- 387 (811)
.|++|+|++.+++.|+..+..-++ .+...+.++|.++||+||||+|||++|+++|..+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999999874222 23445666899999999999999999999999764431
Q ss_pred -------EEeechhhhhhhhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHh
Q 047690 388 -------LSISGSDFMEMFVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVE 456 (811)
Q Consensus 388 -------i~vs~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~e 456 (811)
+.+.... ...+-..+|++++.+... ...|+||||+|.+.. ...|.||..
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~---------------~aanaLLk~ 140 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE---------------RAANALLKA 140 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH---------------HHHHHHHHH
Confidence 1111100 112335688888877542 235999999999932 234777877
Q ss_pred hhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHH
Q 047690 457 MDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGA 536 (811)
Q Consensus 457 mDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSga 536 (811)
|+.. ..++++|.+|+.++.|.|++++ |+ ..+.|+.|+.++..++|... .+.. ......++..+.|..+.
T Consensus 141 LEep--~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~---~~~a~~la~~s~G~~~~ 209 (394)
T PRK07940 141 VEEP--PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGVD---PETARRAARASQGHIGR 209 (394)
T ss_pred hhcC--CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCCC---HHHHHHHHHHcCCCHHH
Confidence 7763 3445555555558999999999 88 69999999998877777632 2222 12245688888887776
Q ss_pred HHHHHHH
Q 047690 537 DIANVCN 543 (811)
Q Consensus 537 DL~~Lvn 543 (811)
.+.-+.+
T Consensus 210 A~~l~~~ 216 (394)
T PRK07940 210 ARRLATD 216 (394)
T ss_pred HHHHhcC
Confidence 6555443
No 107
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=2.7e-13 Score=155.01 Aligned_cols=228 Identities=18% Similarity=0.229 Sum_probs=146.1
Q ss_pred CCCccccccc-cchH--hHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeech
Q 047690 320 KNKVYFRDVA-GCDE--AKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGS 393 (811)
Q Consensus 320 ~~~v~f~dV~-G~ee--ak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s 393 (811)
.+..+|++.+ |... +...++++... +.. ......++++||||||+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~---~~~---~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKV---SEQ---GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhc---ccc---ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4567999976 5432 23444444321 110 011123579999999999999999999875 6889999998
Q ss_pred hhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC
Q 047690 394 DFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN 473 (811)
Q Consensus 394 ~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN 473 (811)
+|...+.......-...|.... ..+++|+||||+.+..+. ....+...++|.+. .....+|+++++
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~------~~qeelf~l~N~l~-------~~~k~IIlts~~ 244 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG------ATQEEFFHTFNSLH-------TEGKLIVISSTC 244 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh------hhHHHHHHHHHHHH-------HCCCcEEEecCC
Confidence 8866543221111112243332 346799999999984321 11223333444433 223456666666
Q ss_pred CCc---ccchhhcCCCCcc--eeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHH
Q 047690 474 RPD---ILDKALLRPGRFD--RQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALI 548 (811)
Q Consensus 474 ~pd---~LDpALlRpGRFd--r~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~ 548 (811)
.|. .+++.|.+ ||. ..+.+..|+.++|..||+..+...++..+.+. ++.++....+ ..++|.+.++..++.
T Consensus 245 ~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~ev-l~~la~~~~~-dir~L~g~l~~l~~~ 320 (445)
T PRK12422 245 APQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETA-LDFLIEALSS-NVKSLLHALTLLAKR 320 (445)
T ss_pred CHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 565 46788888 885 68899999999999999999988766554443 4667776654 567777777766422
Q ss_pred HHH--cCCCccCHHHHHHHHHHHhc
Q 047690 549 AAR--GENSQVTMEHFEAAIDRVIG 571 (811)
Q Consensus 549 Aar--~~~~~It~ed~~~Al~rvi~ 571 (811)
.+. -....||.+++++++..++.
T Consensus 321 ~a~~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 321 VAYKKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHhhh
Confidence 221 13457999999999987643
No 108
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=2.2e-13 Score=158.74 Aligned_cols=208 Identities=20% Similarity=0.277 Sum_probs=146.0
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCe-----EEeechhh-
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF-----LSISGSDF- 395 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpf-----i~vs~s~~- 395 (811)
+.+|++|+|++.+++.|...+. ..++|+++||+||||||||++|+++|+.+.+.- ..-.|..+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr 80 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 4689999999999999888765 345678899999999999999999999874310 01111111
Q ss_pred ----------hhh--hhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc
Q 047690 396 ----------MEM--FVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG 459 (811)
Q Consensus 396 ----------~~~--~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg 459 (811)
.+. -...+-..+|.+...+... ...|++|||+|.+.. ...+.|+..|+.
T Consensus 81 ~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~---------------~A~NaLLKtLEE 145 (605)
T PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST---------------SAWNALLKTLEE 145 (605)
T ss_pred HHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH---------------HHHHHHHHHHHh
Confidence 000 0012334577777665532 135999999999821 245677777775
Q ss_pred CCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHH
Q 047690 460 FGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIA 539 (811)
Q Consensus 460 ~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~ 539 (811)
+...+++|.+|+.+..|.+++++ |+. .+.+..|+..+....|+..+...+...+.+. +..++..+.| +.+++.
T Consensus 146 --Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~ea-l~~La~lS~G-dlR~Al 218 (605)
T PRK05896 146 --PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNA-IDKIADLADG-SLRDGL 218 (605)
T ss_pred --CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-cHHHHH
Confidence 44567788888888999999998 874 7999999999999999998887665544333 4677777765 677777
Q ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 540 NVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 540 ~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
++++.+.... + ..|+.+++.+.+
T Consensus 219 nlLekL~~y~---~-~~It~e~V~ell 241 (605)
T PRK05896 219 SILDQLSTFK---N-SEIDIEDINKTF 241 (605)
T ss_pred HHHHHHHhhc---C-CCCCHHHHHHHh
Confidence 7777644332 3 238988888754
No 109
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.54 E-value=9.4e-14 Score=168.15 Aligned_cols=164 Identities=24% Similarity=0.372 Sum_probs=123.0
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh--------
Q 047690 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME-------- 397 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~-------- 397 (811)
+|..|++++|+++.+++...+.... .....++|+||||||||++++.+|+.++.+|+.++++...+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~------~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNK------IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhccc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 4599999999999998875432211 11235899999999999999999999999999998765432
Q ss_pred -hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc-----CC--------CC
Q 047690 398 -MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG-----FG--------TT 463 (811)
Q Consensus 398 -~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg-----~~--------~~ 463 (811)
.|.|....++...+..+....| ||+|||||.+..... + .....|+..+|. |. .-
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~-----g------~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR-----G------DPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC-----C------CHHHHHHHHhccccEEEEecccccccccC
Confidence 3666666777777776655555 899999999964321 0 123445555542 11 23
Q ss_pred CcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHh
Q 047690 464 AGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLK 511 (811)
Q Consensus 464 ~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~ 511 (811)
+++++|+|+|.. .|+++|++ ||. .|.+..++.++..+|.+.|+.
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 689999999987 59999999 995 899999999999999999984
No 110
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.54 E-value=2.9e-13 Score=159.92 Aligned_cols=216 Identities=18% Similarity=0.177 Sum_probs=140.6
Q ss_pred cccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCc-EEEEcCCCCCHHHHHHHHHHhc-------C---CCeEEeech
Q 047690 326 RDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKG-ALLVGPPGTGKTLLAKATAGES-------G---VPFLSISGS 393 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkG-vLL~GPPGTGKT~LAkAlA~e~-------g---vpfi~vs~s 393 (811)
+.|.|.++..++|..++.. +. + ..|.+ ++|+|+||||||++++.+..++ + +.+++|+|.
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------g-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------Q-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------c-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 5667777777777776654 22 1 22434 4699999999999999998765 2 557899995
Q ss_pred hhhhh----------hhcC-------chhHHHHHHHHHH--hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHH
Q 047690 394 DFMEM----------FVGV-------GPSRVRNLFQEAR--QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLL 454 (811)
Q Consensus 394 ~~~~~----------~vG~-------~~~~vr~lF~~A~--~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL 454 (811)
.+... ..+. ....+..+|.... ....+||+|||||.|..+ .+.+|..|+
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK------------~QDVLYnLF 893 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK------------TQKVLFTLF 893 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc------------HHHHHHHHH
Confidence 43322 1111 1234566666542 233579999999999532 134566666
Q ss_pred HhhhcCCCCCcEEEEecCCC---CcccchhhcCCCCcce-eeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhC
Q 047690 455 VEMDGFGTTAGVVVIAGTNR---PDILDKALLRPGRFDR-QITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALT 530 (811)
Q Consensus 455 ~emDg~~~~~~VIVIaaTN~---pd~LDpALlRpGRFdr-~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t 530 (811)
..... ....++||+++|. ++.|+|.+.+ ||.. .|.|++++.+++.+||+..+.......+ +..++.+|+..
T Consensus 894 R~~~~--s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLd-DdAIELIArkV 968 (1164)
T PTZ00112 894 DWPTK--INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIID-HTAIQLCARKV 968 (1164)
T ss_pred HHhhc--cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHhh
Confidence 55332 3457999999985 5667888887 6653 4888999999999999999886421112 22345566643
Q ss_pred CCC--cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 047690 531 PGF--AGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVI 570 (811)
Q Consensus 531 ~Gf--SgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rvi 570 (811)
... ..+..-.+|+.|+.. .+...|+.+|+..|+.++.
T Consensus 969 Aq~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 969 ANVSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred hhcCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHH
Confidence 322 233344556666554 3456899999999997763
No 111
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3e-13 Score=158.45 Aligned_cols=208 Identities=18% Similarity=0.221 Sum_probs=148.3
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC-------eEE-eech
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP-------FLS-ISGS 393 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp-------fi~-vs~s 393 (811)
+.+|+||+|++.+++.|+..+. ..++++.+|||||||+|||++|+++|+.+.++ .-. -+|.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~-----------~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~ 80 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIE-----------SNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCK 80 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHH
Confidence 4689999999999999988876 23467789999999999999999999987642 111 0111
Q ss_pred hhhhh-------hhc---CchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc
Q 047690 394 DFMEM-------FVG---VGPSRVRNLFQEARQ----CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG 459 (811)
Q Consensus 394 ~~~~~-------~vG---~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg 459 (811)
.+... +-| .+-..++++.+.+.. ....|++|||+|.+. ...+|.||..++.
T Consensus 81 ~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls---------------~~a~naLLK~LEe 145 (563)
T PRK06647 81 SIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS---------------NSAFNALLKTIEE 145 (563)
T ss_pred HHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC---------------HHHHHHHHHhhcc
Confidence 11000 111 123456666554432 234699999999982 2356778888875
Q ss_pred CCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHH
Q 047690 460 FGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIA 539 (811)
Q Consensus 460 ~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~ 539 (811)
+...+++|.+|+.+..|.++|++ |+. .+.+..++.++..++++..++..+...+.+. +..++..+.| +.+++.
T Consensus 146 --pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eA-l~lLa~~s~G-dlR~al 218 (563)
T PRK06647 146 --PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEA-LKWIAYKSTG-SVRDAY 218 (563)
T ss_pred --CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CHHHHH
Confidence 45677787788888899999998 874 7899999999999999998887766554443 5667777765 778888
Q ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 540 NVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 540 ~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
++++.+...+ ...|+.+++..++
T Consensus 219 slLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 219 TLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHhhc----CCCCCHHHHHHHh
Confidence 8887765432 3458888888765
No 112
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=4.2e-13 Score=157.97 Aligned_cols=208 Identities=18% Similarity=0.207 Sum_probs=150.9
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEe-----------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSI----------- 390 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~v----------- 390 (811)
+.+|+||+|++.+++.|...+. ..++|.++||+||+|+|||++|+++|+.+++.....
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~-----------~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFE-----------TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 3589999999999999998775 245788999999999999999999999886532111
Q ss_pred --echhhh--------hhh--hcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHH
Q 047690 391 --SGSDFM--------EMF--VGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLL 454 (811)
Q Consensus 391 --s~s~~~--------~~~--vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL 454 (811)
+|..+. +.- ...+-..+|++.+.++.. ...||+|||+|.+. ....|.||
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls---------------~~a~naLL 153 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS---------------TAAFNALL 153 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC---------------HHHHHHHH
Confidence 111111 100 012345678887776533 24699999999982 23467778
Q ss_pred HhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCc
Q 047690 455 VEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFA 534 (811)
Q Consensus 455 ~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfS 534 (811)
..|+. +..++++|.+|+.++.+.+.+++ |+ ..+.|..|+.++....|+..+++.+...+.+. +..|+..+.| +
T Consensus 154 KtLEe--Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eA-l~lIa~~a~G-d 226 (598)
T PRK09111 154 KTLEE--PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEA-LALIARAAEG-S 226 (598)
T ss_pred HHHHh--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-C
Confidence 77776 44566777677777888888888 77 57999999999999999999988776655433 4667777765 7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 535 GADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 535 gaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
.+++.++++.+... +...||.+++...+
T Consensus 227 lr~al~~Ldkli~~----g~g~It~e~V~~ll 254 (598)
T PRK09111 227 VRDGLSLLDQAIAH----GAGEVTAEAVRDML 254 (598)
T ss_pred HHHHHHHHHHHHhh----cCCCcCHHHHHHHh
Confidence 88888888776543 23469999998765
No 113
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=4.9e-13 Score=154.85 Aligned_cols=202 Identities=18% Similarity=0.253 Sum_probs=146.9
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC---------------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP--------------- 386 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp--------------- 386 (811)
+.+|+||+|++.+++.|+..+. ..++|..+|||||+|+|||++|+++|+.+.++
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~-----------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~ 78 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALD-----------NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQ 78 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 4689999999999999998876 23567888999999999999999999986321
Q ss_pred ---------eEEeechhhhhhhhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHH
Q 047690 387 ---------FLSISGSDFMEMFVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQL 453 (811)
Q Consensus 387 ---------fi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqL 453 (811)
++.+++++ ..+-..++++...+... ...|++|||+|.+. ....|.|
T Consensus 79 ~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt---------------~~A~NAL 137 (535)
T PRK08451 79 SALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT---------------KEAFNAL 137 (535)
T ss_pred HHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC---------------HHHHHHH
Confidence 22222111 01235677766554321 12499999999982 2356777
Q ss_pred HHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCC
Q 047690 454 LVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGF 533 (811)
Q Consensus 454 L~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~Gf 533 (811)
|..|+.. ...+++|.+|+.+..|.+++++ |+ ..++|..++.++....++..++..+...+.+ .+..++..+.|
T Consensus 138 LK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~-Al~~Ia~~s~G- 210 (535)
T PRK08451 138 LKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPE-ALEILARSGNG- 210 (535)
T ss_pred HHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 8888764 4456666667778999999998 86 5899999999999999999888877655444 35777877765
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 534 AGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 534 SgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
+.+++.+++..+...+ ...||.+++...+
T Consensus 211 dlR~alnlLdqai~~~----~~~It~~~V~~~l 239 (535)
T PRK08451 211 SLRDTLTLLDQAIIYC----KNAITESKVADML 239 (535)
T ss_pred cHHHHHHHHHHHHHhc----CCCCCHHHHHHHh
Confidence 7888888888776554 3458888776653
No 114
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.52 E-value=2e-13 Score=147.07 Aligned_cols=209 Identities=24% Similarity=0.383 Sum_probs=137.7
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC---eEEeechhhhhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP---FLSISGSDFMEM 398 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp---fi~vs~s~~~~~ 398 (811)
+-+++|++|++++..+ ..++.-+-... ++ ..++||||||||||+|||.|+....-+ |+.+++..
T Consensus 134 PktL~dyvGQ~hlv~q-~gllrs~ieq~-------~i-pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~---- 200 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQ-DGLLRSLIEQN-------RI-PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN---- 200 (554)
T ss_pred cchHHHhcchhhhcCc-chHHHHHHHcC-------CC-CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc----
Confidence 4578999999887665 33332211111 12 258999999999999999999988766 77777644
Q ss_pred hhcCchhHHHHHHHHHHhc-----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC
Q 047690 399 FVGVGPSRVRNLFQEARQC-----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN 473 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~~-----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN 473 (811)
...+.+|++|++++.. ...||||||||.+.+.++ ..||-.. .+..|++|++|.
T Consensus 201 ---a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ---------------D~fLP~V----E~G~I~lIGATT 258 (554)
T KOG2028|consen 201 ---AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ---------------DTFLPHV----ENGDITLIGATT 258 (554)
T ss_pred ---cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh---------------hccccee----ccCceEEEeccc
Confidence 2457899999998753 357999999999843321 1222221 346788887764
Q ss_pred -CC-cccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhc--------cCCC----CCchhhhHHHhhCCCCcHHHHH
Q 047690 474 -RP-DILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKI--------KLDH----EPSYYSQRLAALTPGFAGADIA 539 (811)
Q Consensus 474 -~p-d~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~--------~l~~----~~d~~l~~LA~~t~GfSgaDL~ 539 (811)
.| -.|..+|++ |+ +++.+...+.+....||..-..-+ ++.. -.+-.++.++..+.|=..+.|.
T Consensus 259 ENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN 335 (554)
T KOG2028|consen 259 ENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALN 335 (554)
T ss_pred CCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHH
Confidence 34 468999999 77 688889889999999998754321 1111 1123357788888875555554
Q ss_pred HHHHHHHHHHHHcC---CCccCHHHHHHHHHH
Q 047690 540 NVCNEAALIAARGE---NSQVTMEHFEAAIDR 568 (811)
Q Consensus 540 ~LvneAal~Aar~~---~~~It~ed~~~Al~r 568 (811)
.|---+.+.+.|.+ ...++.+|+.+++.+
T Consensus 336 ~Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 336 ALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HHHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 43222223334433 336889999998864
No 115
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=4.9e-13 Score=153.26 Aligned_cols=208 Identities=16% Similarity=0.183 Sum_probs=141.7
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCe---------EEeec
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF---------LSISG 392 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpf---------i~vs~ 392 (811)
+.+|+||+|++.+++.|...+. ..++|..+|||||||+|||++|+++|+.+.++- ...+|
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~-----------~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C 81 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALR-----------FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASC 81 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH-----------cCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHH
Confidence 4789999999999999888876 235678899999999999999999999874421 00111
Q ss_pred hhhhhh-------hhc---CchhHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh
Q 047690 393 SDFMEM-------FVG---VGPSRVRNLFQEAR----QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD 458 (811)
Q Consensus 393 s~~~~~-------~vG---~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD 458 (811)
..+... +.| .+-..++.+-+... .....||+|||+|.+. ....+.|+..|+
T Consensus 82 ~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt---------------~~~~n~LLk~lE 146 (451)
T PRK06305 82 KEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT---------------KEAFNSLLKTLE 146 (451)
T ss_pred HHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC---------------HHHHHHHHHHhh
Confidence 111100 111 12234554443332 1345799999999982 124577787777
Q ss_pred cCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHH
Q 047690 459 GFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADI 538 (811)
Q Consensus 459 g~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL 538 (811)
. +...+++|.+||.+..|.++|++ |+ ..+++..++.++....++..++..+...+.+. +..++..+.| +.+++
T Consensus 147 e--p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~a-l~~L~~~s~g-dlr~a 219 (451)
T PRK06305 147 E--PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREA-LLPIARAAQG-SLRDA 219 (451)
T ss_pred c--CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CHHHH
Confidence 6 34567777777888899999998 77 47999999999999999988887665554332 4667777754 45555
Q ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 539 ANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 539 ~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
.++++..... .+ ..|+.+++.+++
T Consensus 220 ~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 220 ESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 5555543322 22 449999888776
No 116
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.3e-13 Score=152.54 Aligned_cols=213 Identities=14% Similarity=0.211 Sum_probs=144.8
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCe-E---------Ee
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF-L---------SI 390 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpf-i---------~v 390 (811)
.+.+|++|+|++.+++.|+..+. ..++|..+||+||||+|||++|+++|+++.+.- . .-
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 34689999999999999888776 345788899999999999999999999886521 0 00
Q ss_pred ec------hhhhh-------hhhc---CchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHH
Q 047690 391 SG------SDFME-------MFVG---VGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTL 450 (811)
Q Consensus 391 s~------s~~~~-------~~vG---~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tL 450 (811)
.| ..+.. .+.+ .+...++++.+.+... ...|++|||+|.+.. ...
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~---------------~~~ 144 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI---------------AAF 144 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------------HHH
Confidence 11 11110 0111 1235666665555321 235999999999821 245
Q ss_pred HHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhC
Q 047690 451 NQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALT 530 (811)
Q Consensus 451 nqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t 530 (811)
+.|+..++. +....++|.+|+.+..+-+++.+ |+. .+++..++.++....++..++..+...+.+. ++.++..+
T Consensus 145 ~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~a-l~~l~~~s 218 (397)
T PRK14955 145 NAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADA-LQLIGRKA 218 (397)
T ss_pred HHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHc
Confidence 567777764 33455566666667788888887 764 7899999999999888888877665444433 46677777
Q ss_pred CCCcHHHHHHHHHHHHHHHHH-cCCCccCHHHHHHHH
Q 047690 531 PGFAGADIANVCNEAALIAAR-GENSQVTMEHFEAAI 566 (811)
Q Consensus 531 ~GfSgaDL~~LvneAal~Aar-~~~~~It~ed~~~Al 566 (811)
.| +.+.+.+.++.+..++.. .....|+.+++.+.+
T Consensus 219 ~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 219 QG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred CC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 65 666777777765555432 234679999998876
No 117
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.50 E-value=4e-13 Score=150.14 Aligned_cols=175 Identities=31% Similarity=0.451 Sum_probs=128.1
Q ss_pred ccccchHhHHHHHHHHHH-hcCchhhhhc-CCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh-hhhc-C
Q 047690 327 DVAGCDEAKQEIMEFVHF-LKNPRKYEDL-GAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME-MFVG-V 402 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~-Lk~p~~~~~l-g~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~-~~vG-~ 402 (811)
-|+|++++|+.+...+.. ++.......+ .-..|+++||+||||||||++|+++|..++.||+.+++..+.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999999766542 2211111111 1235789999999999999999999999999999999988875 5777 4
Q ss_pred chhHHHHHHHHHH-------------------------------------------------------------------
Q 047690 403 GPSRVRNLFQEAR------------------------------------------------------------------- 415 (811)
Q Consensus 403 ~~~~vr~lF~~A~------------------------------------------------------------------- 415 (811)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5566666666550
Q ss_pred ------------------------------------------------------------------------hcCCeEEE
Q 047690 416 ------------------------------------------------------------------------QCAPSIIF 423 (811)
Q Consensus 416 ------------------------------------------------------------------------~~aP~ILf 423 (811)
...-+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01346999
Q ss_pred EcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcC--------CCCCcEEEEecCC----CCcccchhhcCCCCccee
Q 047690 424 IDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGF--------GTTAGVVVIAGTN----RPDILDKALLRPGRFDRQ 491 (811)
Q Consensus 424 IDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~--------~~~~~VIVIaaTN----~pd~LDpALlRpGRFdr~ 491 (811)
|||||.|+.+... .+.+-..+.+...||..++|- -.+++|++||+-. .|+.|=|.|.- ||...
T Consensus 253 iDEiDKIa~~~~~---~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~ 327 (441)
T TIGR00390 253 IDEIDKIAKKGES---SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIR 327 (441)
T ss_pred EEchhhhcccCCC---CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceE
Confidence 9999999876421 133344466778888888873 2356788888754 46667777765 99999
Q ss_pred eeccCCCHHHHHHHH
Q 047690 492 ITIDKPDIKGRDQIF 506 (811)
Q Consensus 492 I~v~~Pd~~eR~eIL 506 (811)
+.+..++.++...||
T Consensus 328 v~L~~L~~edL~rIL 342 (441)
T TIGR00390 328 VELQALTTDDFERIL 342 (441)
T ss_pred EECCCCCHHHHHHHh
Confidence 999999999998887
No 118
>PRK08727 hypothetical protein; Validated
Probab=99.50 E-value=2.4e-12 Score=135.34 Aligned_cols=209 Identities=16% Similarity=0.188 Sum_probs=133.6
Q ss_pred CCCccccccccchH-hHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhh
Q 047690 320 KNKVYFRDVAGCDE-AKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDF 395 (811)
Q Consensus 320 ~~~v~f~dV~G~ee-ak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~ 395 (811)
.+..+|++.++... +...+..+. .. .....++|+||+|||||+|++|++.++ +...++++..++
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~~---~~---------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQALA---AG---------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHHH---hc---------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 45678998775543 333222221 11 123459999999999999999997764 667778877665
Q ss_pred hhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCC
Q 047690 396 MEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRP 475 (811)
Q Consensus 396 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~p 475 (811)
.. .+.+.++... ...+|+|||+|.+.. ....+..+..++..+. .+..-+|+++...|
T Consensus 81 ~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~----------~~~~~~~lf~l~n~~~---~~~~~vI~ts~~~p 137 (233)
T PRK08727 81 AG--------RLRDALEALE--GRSLVALDGLESIAG----------QREDEVALFDFHNRAR---AAGITLLYTARQMP 137 (233)
T ss_pred hh--------hHHHHHHHHh--cCCEEEEeCcccccC----------ChHHHHHHHHHHHHHH---HcCCeEEEECCCCh
Confidence 42 2333444332 346999999998832 1122333444444432 22333555555577
Q ss_pred ccc---chhhcCCCCc--ceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 047690 476 DIL---DKALLRPGRF--DRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAA 550 (811)
Q Consensus 476 d~L---DpALlRpGRF--dr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aa 550 (811)
..+ ++.|++ || ...+.++.|+.+++.+|++.++...++..+.+. +..|+..+.| +.+.+.++++.....+.
T Consensus 138 ~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~-~~~La~~~~r-d~r~~l~~L~~l~~~~~ 213 (233)
T PRK08727 138 DGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAA-IDWLLTHGER-ELAGLVALLDRLDRESL 213 (233)
T ss_pred hhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 765 789998 87 467899999999999999998877666555443 5778888764 45555555665443333
Q ss_pred HcCCCccCHHHHHHHHHH
Q 047690 551 RGENSQVTMEHFEAAIDR 568 (811)
Q Consensus 551 r~~~~~It~ed~~~Al~r 568 (811)
.. ++.||.+.+.+.+..
T Consensus 214 ~~-~~~it~~~~~~~l~~ 230 (233)
T PRK08727 214 AA-KRRVTVPFLRRVLEE 230 (233)
T ss_pred Hh-CCCCCHHHHHHHHhh
Confidence 33 457999998888753
No 119
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.49 E-value=8.7e-13 Score=151.19 Aligned_cols=220 Identities=17% Similarity=0.273 Sum_probs=143.7
Q ss_pred Cccccccc-cchH--hHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-----CCCeEEeech
Q 047690 322 KVYFRDVA-GCDE--AKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSISGS 393 (811)
Q Consensus 322 ~v~f~dV~-G~ee--ak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs~s 393 (811)
..+|++.+ |.+. |...++.++ .+|. ....+++|||++|||||+|++|+++++ +..++++++.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a---~~~~-------~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~ 180 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVS---KNPG-------ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD 180 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHH---hCcC-------cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 46898866 4432 333333332 2221 123568999999999999999999854 5788999999
Q ss_pred hhhhhhhcCchh---HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEe
Q 047690 394 DFMEMFVGVGPS---RVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIA 470 (811)
Q Consensus 394 ~~~~~~vG~~~~---~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIa 470 (811)
+|...+...... .+..+.... ..+.+|+|||++.+..+ +..+..+-.++..+. .....+||+
T Consensus 181 ~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~k----------~~~~e~lf~l~N~~~---~~~k~iIlt 245 (450)
T PRK14087 181 EFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSYK----------EKTNEIFFTIFNNFI---ENDKQLFFS 245 (450)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccCC----------HHHHHHHHHHHHHHH---HcCCcEEEE
Confidence 988776533221 122221121 24579999999988321 222223333333322 233456666
Q ss_pred cCCCCcc---cchhhcCCCCcc--eeeeccCCCHHHHHHHHHHHHhhccCC-CCCchhhhHHHhhCCCCcHHHHHHHHHH
Q 047690 471 GTNRPDI---LDKALLRPGRFD--RQITIDKPDIKGRDQIFQVYLKKIKLD-HEPSYYSQRLAALTPGFAGADIANVCNE 544 (811)
Q Consensus 471 aTN~pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~eIL~~~l~~~~l~-~~~d~~l~~LA~~t~GfSgaDL~~Lvne 544 (811)
+...|.. +++.|.+ ||. ..+.+..|+.++|.+||+.+++..++. .-.+..+..|+....| +.+.|.++|+.
T Consensus 246 sd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~ 322 (450)
T PRK14087 246 SDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSR 322 (450)
T ss_pred CCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHH
Confidence 5555554 4678888 885 567899999999999999999876542 1223345778888776 78999999998
Q ss_pred HHHHHHHcC-CCccCHHHHHHHHHHH
Q 047690 545 AALIAARGE-NSQVTMEHFEAAIDRV 569 (811)
Q Consensus 545 Aal~Aar~~-~~~It~ed~~~Al~rv 569 (811)
+...+.... ...||.+.+.+++..+
T Consensus 323 l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 323 LNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 875555442 3679999999999764
No 120
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.49 E-value=2e-12 Score=153.36 Aligned_cols=217 Identities=22% Similarity=0.331 Sum_probs=135.8
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----------CCCeEEee
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSIS 391 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----------gvpfi~vs 391 (811)
+.+|++++|++.+.+.+...+. . ..+..++|+||||||||++|+++++.. +.+|+.++
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia---~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVA---S---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHh---c---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 4689999999999887755442 1 124579999999999999999998755 46899999
Q ss_pred chhhh-------hhhhcCchhH----HHHHHHH----------HHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHH
Q 047690 392 GSDFM-------EMFVGVGPSR----VRNLFQE----------ARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTL 450 (811)
Q Consensus 392 ~s~~~-------~~~vG~~~~~----vr~lF~~----------A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tL 450 (811)
|..+. ....+..... .+..+.. .......+|||||++.|- ...+..+
T Consensus 218 ~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld------------~~~Q~~L 285 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD------------PLLQNKL 285 (615)
T ss_pred chhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC------------HHHHHHH
Confidence 87652 1112211110 0111110 012235699999998872 2333333
Q ss_pred HHHHHhhh-----------------------cCCCCCcEEEEe-cCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHH
Q 047690 451 NQLLVEMD-----------------------GFGTTAGVVVIA-GTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIF 506 (811)
Q Consensus 451 nqLL~emD-----------------------g~~~~~~VIVIa-aTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL 506 (811)
..++..-. .-.....+++|+ +|+.++.++++|++ ||. .+++++++.+++.+|+
T Consensus 286 l~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il 362 (615)
T TIGR02903 286 LKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIV 362 (615)
T ss_pred HHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHH
Confidence 33433210 000123456665 45678889999988 886 6788889999999999
Q ss_pred HHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHc--------CCCccCHHHHHHHHHH
Q 047690 507 QVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARG--------ENSQVTMEHFEAAIDR 568 (811)
Q Consensus 507 ~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~--------~~~~It~ed~~~Al~r 568 (811)
+.++.......+.+ .++.|+..+. .++...+++..+...+..+ ....|+.+|+++++..
T Consensus 363 ~~~a~~~~v~ls~e-al~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 363 LNAAEKINVHLAAG-VEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHcCCCCCHH-HHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 99998765443332 3466666553 4555555555544333211 2236999999999853
No 121
>PRK05642 DNA replication initiation factor; Validated
Probab=99.48 E-value=3.3e-12 Score=134.50 Aligned_cols=212 Identities=13% Similarity=0.194 Sum_probs=137.3
Q ss_pred cCCCccccccccchHhHHHHHHHHHHh-cCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHFL-KNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSD 394 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~L-k~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~ 394 (811)
..+..+|++.+.... ..+.+.+..+ ..+ +......++|+||+|||||+|++|+++++ +..+++++..+
T Consensus 12 ~~~~~tfdnF~~~~~--~~a~~~~~~~~~~~------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~ 83 (234)
T PRK05642 12 LRDDATFANYYPGAN--AAALGYVERLCEAD------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred CCCcccccccCcCCh--HHHHHHHHHHhhcc------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence 345678998873221 2233333221 111 11123678999999999999999998764 67888999888
Q ss_pred hhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCC
Q 047690 395 FMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNR 474 (811)
Q Consensus 395 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~ 474 (811)
+.... ..+.+..+. ..+|+|||++.+..+ ...+..+-.++ +.+..+...+|++++..
T Consensus 84 ~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~----------~~~~~~Lf~l~---n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 84 LLDRG--------PELLDNLEQ--YELVCLDDLDVIAGK----------ADWEEALFHLF---NRLRDSGRRLLLAASKS 140 (234)
T ss_pred HHhhh--------HHHHHhhhh--CCEEEEechhhhcCC----------hHHHHHHHHHH---HHHHhcCCEEEEeCCCC
Confidence 76431 222223322 258999999988321 12223333333 33334456788888776
Q ss_pred Cccc---chhhcCCCCcc--eeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHH
Q 047690 475 PDIL---DKALLRPGRFD--RQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIA 549 (811)
Q Consensus 475 pd~L---DpALlRpGRFd--r~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~A 549 (811)
|..+ .|.|++ ||. ..+.+..|+.++|..+++..+...++..+.+ .++.++....+ +.+.+.++++.-.. +
T Consensus 141 p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~e-v~~~L~~~~~~-d~r~l~~~l~~l~~-~ 215 (234)
T PRK05642 141 PRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDE-VGHFILTRGTR-SMSALFDLLERLDQ-A 215 (234)
T ss_pred HHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHH-H
Confidence 6543 688888 884 6678899999999999997777665544433 35677777765 78888888887654 3
Q ss_pred HHcCCCccCHHHHHHHH
Q 047690 550 ARGENSQVTMEHFEAAI 566 (811)
Q Consensus 550 ar~~~~~It~ed~~~Al 566 (811)
+...++.||..-+++++
T Consensus 216 ~l~~~~~it~~~~~~~L 232 (234)
T PRK05642 216 SLQAQRKLTIPFLKETL 232 (234)
T ss_pred HHHcCCcCCHHHHHHHh
Confidence 33445679988887776
No 122
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.7e-12 Score=153.80 Aligned_cols=206 Identities=18% Similarity=0.245 Sum_probs=143.5
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEE----e---echh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLS----I---SGSD 394 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~----v---s~s~ 394 (811)
..+|++|+|++++++.|...+.. .+++.++||+||+|||||++|+++|+.+.+.... - .|..
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~ 80 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCEL 80 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHH
Confidence 47899999999999999988762 2356789999999999999999999988652110 0 1111
Q ss_pred -----------hh--hhhhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhh
Q 047690 395 -----------FM--EMFVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEM 457 (811)
Q Consensus 395 -----------~~--~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~em 457 (811)
+. +.....+...+|++...+... ...||+|||+|.|. ....+.||..|
T Consensus 81 C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt---------------~~a~naLLK~L 145 (620)
T PRK14948 81 CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS---------------TAAFNALLKTL 145 (620)
T ss_pred HHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC---------------HHHHHHHHHHH
Confidence 10 001123446788888776532 23599999999982 23567788888
Q ss_pred hcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHH
Q 047690 458 DGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGAD 537 (811)
Q Consensus 458 Dg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaD 537 (811)
+. ....+++|.+|+.++.+-+.|++ |+ ..+.|..++.++....+...+.+.+...+.+. +..++..+.| ..++
T Consensus 146 Ee--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~a-l~~La~~s~G-~lr~ 218 (620)
T PRK14948 146 EE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEA-LTLVAQRSQG-GLRD 218 (620)
T ss_pred hc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCC-CHHH
Confidence 85 44567777778888889999988 77 57889999988888888887777655544333 5677777766 4466
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 047690 538 IANVCNEAALIAARGENSQVTMEHFEAA 565 (811)
Q Consensus 538 L~~LvneAal~Aar~~~~~It~ed~~~A 565 (811)
+.++++...+. ...|+.+++.+.
T Consensus 219 A~~lLeklsL~-----~~~It~e~V~~l 241 (620)
T PRK14948 219 AESLLDQLSLL-----PGPITPEAVWDL 241 (620)
T ss_pred HHHHHHHHHhc-----cCCCCHHHHHHH
Confidence 66666654332 134777666543
No 123
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.6e-12 Score=153.61 Aligned_cols=208 Identities=14% Similarity=0.229 Sum_probs=142.5
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEE---ee---chhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLS---IS---GSDF 395 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~---vs---~s~~ 395 (811)
..+|+||+|++.+++.|+..+.. .+++..+||+||||+|||++|+++|+.+++.... .. |..+
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c 80 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMC 80 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHH
Confidence 56899999999999999887762 2456778999999999999999999987542210 01 1111
Q ss_pred hhhh-------------hcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh
Q 047690 396 MEMF-------------VGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD 458 (811)
Q Consensus 396 ~~~~-------------vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD 458 (811)
.... ...+-..++++.+.+... ...||+|||+|.|. ...++.||..++
T Consensus 81 ~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~---------------~~a~naLLk~LE 145 (585)
T PRK14950 81 RAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS---------------TAAFNALLKTLE 145 (585)
T ss_pred HHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC---------------HHHHHHHHHHHh
Confidence 1000 012234456655444321 24599999999882 134677777777
Q ss_pred cCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHH
Q 047690 459 GFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADI 538 (811)
Q Consensus 459 g~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL 538 (811)
.. ...+++|.+|+..+.+.+.+++ |+. .+.|..++..+...+++..+...++..+.+. +..++..+.| +.+++
T Consensus 146 ep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~ea-l~~La~~s~G-dlr~a 218 (585)
T PRK14950 146 EP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGA-LEAIARAATG-SMRDA 218 (585)
T ss_pred cC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CHHHH
Confidence 63 3456666667777778888887 764 6889999999999999988887766544432 4677777765 77777
Q ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 539 ANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 539 ~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
.+.++..+.+ ....|+.+++...+
T Consensus 219 l~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 219 ENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 7777754332 34569998887754
No 124
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.8e-12 Score=152.95 Aligned_cols=212 Identities=14% Similarity=0.218 Sum_probs=144.7
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEE----------ee
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLS----------IS 391 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~----------vs 391 (811)
+.+|++|+|++.+++.|+..+. ..+++.++||+||+|||||++|+++|+.+.+.--. -.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~ 80 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP 80 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC
Confidence 4689999999999999888765 34678889999999999999999999988662100 01
Q ss_pred ------chhhhh-------hhhc---CchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHH
Q 047690 392 ------GSDFME-------MFVG---VGPSRVRNLFQEARQ----CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLN 451 (811)
Q Consensus 392 ------~s~~~~-------~~vG---~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLn 451 (811)
|..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+. ....+
T Consensus 81 Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt---------------~~a~n 145 (620)
T PRK14954 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS---------------TAAFN 145 (620)
T ss_pred CccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC---------------HHHHH
Confidence 111110 0111 123566666655532 123599999999982 12456
Q ss_pred HHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCC
Q 047690 452 QLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTP 531 (811)
Q Consensus 452 qLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~ 531 (811)
.||..|+. +...+++|.+|+.+..|-+.|++ |+ ..+.|..++.++....+...++..+...+.+. ++.++..+.
T Consensus 146 aLLK~LEe--Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~ea-l~~La~~s~ 219 (620)
T PRK14954 146 AFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADA-LQLIARKAQ 219 (620)
T ss_pred HHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhC
Confidence 77777776 33455666566667888888888 66 58999999999988888888877665544433 467777776
Q ss_pred CCcHHHHHHHHHHHHHHHH-HcCCCccCHHHHHHHH
Q 047690 532 GFAGADIANVCNEAALIAA-RGENSQVTMEHFEAAI 566 (811)
Q Consensus 532 GfSgaDL~~LvneAal~Aa-r~~~~~It~ed~~~Al 566 (811)
| +.+++.+.++....++. ......|+.+++.+.+
T Consensus 220 G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 220 G-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred C-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 5 56666666665444431 1235679998888876
No 125
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.47 E-value=2.7e-12 Score=139.50 Aligned_cols=201 Identities=21% Similarity=0.262 Sum_probs=132.5
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcC-----CCeEEeechhhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESG-----VPFLSISGSDFM 396 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~g-----vpfi~vs~s~~~ 396 (811)
+.+|+|++|++++++.|...+.. . ..| ++||+||||||||++++++++++. .+++.+++++-.
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~---~--------~~~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 80 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKE---K--------NMP-HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER 80 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhC---C--------CCC-eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc
Confidence 36899999999999998887751 1 122 489999999999999999999863 345555544321
Q ss_pred hhhhcCchhHHHHHHHHHHh------cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEe
Q 047690 397 EMFVGVGPSRVRNLFQEARQ------CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIA 470 (811)
Q Consensus 397 ~~~vG~~~~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIa 470 (811)
....+++.+..... ..+.+|+|||+|.+.. .. .+.|+..++....+ ..+|.
T Consensus 81 ------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~------------~~---~~~L~~~le~~~~~--~~lIl 137 (319)
T PRK00440 81 ------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS------------DA---QQALRRTMEMYSQN--TRFIL 137 (319)
T ss_pred ------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH------------HH---HHHHHHHHhcCCCC--CeEEE
Confidence 11122222222211 2246999999998821 11 23444445543333 34555
Q ss_pred cCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 047690 471 GTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAA 550 (811)
Q Consensus 471 aTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aa 550 (811)
++|.+..+.+++.+ |+. .++++.++.++...+++.++++.+...+.+. +..++..+.| +.+.+.+.++.++.
T Consensus 138 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~a-l~~l~~~~~g-d~r~~~~~l~~~~~--- 209 (319)
T PRK00440 138 SCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDA-LEAIYYVSEG-DMRKAINALQAAAA--- 209 (319)
T ss_pred EeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CHHHHHHHHHHHHH---
Confidence 66777777777877 775 6899999999999999999988776555443 5777777654 44444444443332
Q ss_pred HcCCCccCHHHHHHHHH
Q 047690 551 RGENSQVTMEHFEAAID 567 (811)
Q Consensus 551 r~~~~~It~ed~~~Al~ 567 (811)
....||.+++..++.
T Consensus 210 --~~~~it~~~v~~~~~ 224 (319)
T PRK00440 210 --TGKEVTEEAVYKITG 224 (319)
T ss_pred --cCCCCCHHHHHHHhC
Confidence 246799999988873
No 126
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.46 E-value=1.2e-12 Score=147.58 Aligned_cols=180 Identities=28% Similarity=0.339 Sum_probs=116.8
Q ss_pred ccccchHhHHHHHHHHH----HhcCc-hhhhhcCCCC-CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh-hh
Q 047690 327 DVAGCDEAKQEIMEFVH----FLKNP-RKYEDLGAKI-PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME-MF 399 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~----~Lk~p-~~~~~lg~~~-pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~-~~ 399 (811)
.|+|++++++.+...+. .+... ..-...+... ..++||+||||||||++|+++|..+++||..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 37999999999987652 12210 0000011112 357999999999999999999999999999999988753 47
Q ss_pred hcCch-hHHHHHHHHH----HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC-----------CC
Q 047690 400 VGVGP-SRVRNLFQEA----RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG-----------TT 463 (811)
Q Consensus 400 vG~~~-~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~-----------~~ 463 (811)
+|... ..+..++..+ ....++||||||||.+.+++..... ..+...+.+.+.||..|+|.. +.
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~-~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSI-TRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccc-cccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 77653 3344444322 2346789999999999875432111 111111245566666666532 12
Q ss_pred CcEEEEecCCCC---------------------------c-----------------------ccchhhcCCCCcceeee
Q 047690 464 AGVVVIAGTNRP---------------------------D-----------------------ILDKALLRPGRFDRQIT 493 (811)
Q Consensus 464 ~~VIVIaaTN~p---------------------------d-----------------------~LDpALlRpGRFdr~I~ 493 (811)
.+.++|.|+|-. + -+.|+++. |+|..+.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~ 314 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIAT 314 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEee
Confidence 346777777750 0 02355554 9999999
Q ss_pred ccCCCHHHHHHHHHHH
Q 047690 494 IDKPDIKGRDQIFQVY 509 (811)
Q Consensus 494 v~~Pd~~eR~eIL~~~ 509 (811)
+...+.++..+|+...
T Consensus 315 f~pL~~~~L~~Il~~~ 330 (413)
T TIGR00382 315 LEKLDEEALIAILTKP 330 (413)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 9999999999998763
No 127
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.45 E-value=3e-13 Score=151.23 Aligned_cols=176 Identities=30% Similarity=0.445 Sum_probs=130.1
Q ss_pred ccccchHhHHHHHHHHHH-hcCchhhhhcC-CCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh-hhhcCc
Q 047690 327 DVAGCDEAKQEIMEFVHF-LKNPRKYEDLG-AKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME-MFVGVG 403 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg-~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~-~~vG~~ 403 (811)
.|+|++++|+.+...+.. ++.......+. -..|+++||+||||||||++|++||+.++.||+.+++++|.+ .|+|..
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 499999999999877642 21111101111 113689999999999999999999999999999999999986 588843
Q ss_pred -hhHHHHHHHHHH-------------------------------------------------------------------
Q 047690 404 -PSRVRNLFQEAR------------------------------------------------------------------- 415 (811)
Q Consensus 404 -~~~vr~lF~~A~------------------------------------------------------------------- 415 (811)
+..++++|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 566777776661
Q ss_pred ---------------------------------------------------------------------h--cCCeEEEE
Q 047690 416 ---------------------------------------------------------------------Q--CAPSIIFI 424 (811)
Q Consensus 416 ---------------------------------------------------------------------~--~aP~ILfI 424 (811)
. ..-+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12359999
Q ss_pred cCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcC--------CCCCcEEEEecCC----CCcccchhhcCCCCcceee
Q 047690 425 DEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGF--------GTTAGVVVIAGTN----RPDILDKALLRPGRFDRQI 492 (811)
Q Consensus 425 DEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~--------~~~~~VIVIaaTN----~pd~LDpALlRpGRFdr~I 492 (811)
||||.|+.+.+. ++.+...+.+...||..++|- -.+++|++||+-. .|+.|-|.|.- ||...+
T Consensus 256 DEiDKIa~~~~~---~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v 330 (443)
T PRK05201 256 DEIDKIAARGGS---SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRV 330 (443)
T ss_pred EcchhhcccCCC---CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEE
Confidence 999999876432 233444566778888888873 2356788887743 56677788875 999999
Q ss_pred eccCCCHHHHHHHHH
Q 047690 493 TIDKPDIKGRDQIFQ 507 (811)
Q Consensus 493 ~v~~Pd~~eR~eIL~ 507 (811)
.+..++.++...||.
T Consensus 331 ~L~~L~~~dL~~ILt 345 (443)
T PRK05201 331 ELDALTEEDFVRILT 345 (443)
T ss_pred ECCCCCHHHHHHHhc
Confidence 999999999998883
No 128
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.45 E-value=9.8e-13 Score=150.96 Aligned_cols=208 Identities=19% Similarity=0.313 Sum_probs=159.2
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCe--EEe---echh--
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF--LSI---SGSD-- 394 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpf--i~v---s~s~-- 394 (811)
+.+|+||+|++.+...|...+.. .++..+.|++||.|||||++||.+|+.+++.- ..- .|..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck 80 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK 80 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh-----------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhH
Confidence 35899999999999999998873 45677889999999999999999999886642 111 1211
Q ss_pred ---------hhhh--hhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc
Q 047690 395 ---------FMEM--FVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG 459 (811)
Q Consensus 395 ---------~~~~--~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg 459 (811)
++++ -...+-..+|++.+.+... ..-|.+|||+|.|- .+..|.||..++.
T Consensus 81 ~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------------~~afNALLKTLEE 145 (515)
T COG2812 81 EINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------------KQAFNALLKTLEE 145 (515)
T ss_pred hhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh---------------HHHHHHHhccccc
Confidence 1111 1112345678887776432 23599999999982 4578999999886
Q ss_pred CCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHH
Q 047690 460 FGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIA 539 (811)
Q Consensus 460 ~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~ 539 (811)
+..+|++|.+|..+..+++.+++ |+ .++.+..-+.++....|...+.+.++..+.+. +..+|+...| +.+|..
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~a-L~~ia~~a~G-s~RDal 218 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDA-LSLIARAAEG-SLRDAL 218 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHH-HHHHHHHcCC-ChhhHH
Confidence 77899999999999999999998 77 47889999999999999999998888777665 5788888887 789999
Q ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 540 NVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 540 ~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
.+++.|.... ...|+.+++...+
T Consensus 219 slLDq~i~~~----~~~It~~~v~~~l 241 (515)
T COG2812 219 SLLDQAIAFG----EGEITLESVRDML 241 (515)
T ss_pred HHHHHHHHcc----CCcccHHHHHHHh
Confidence 9999876553 2456666665543
No 129
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.45 E-value=1.4e-12 Score=143.70 Aligned_cols=220 Identities=20% Similarity=0.264 Sum_probs=135.8
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-------CCCeEEe--e
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-------GVPFLSI--S 391 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-------gvpfi~v--s 391 (811)
....|++|+|++++++.|.-.+- ++. -.++||+|+||||||++||++|+-+ +.|+-.. .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~~~---------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---DPG---------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---ccC---------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 35789999999999998775321 010 1469999999999999999999977 3322111 1
Q ss_pred c-hh---------------hhhhhhcCchhHHHH--HHHHH-------------HhcCCeEEEEcCcchhhhhcCCCCCC
Q 047690 392 G-SD---------------FMEMFVGVGPSRVRN--LFQEA-------------RQCAPSIIFIDEIDAIGRARGRGGFS 440 (811)
Q Consensus 392 ~-s~---------------~~~~~vG~~~~~vr~--lF~~A-------------~~~aP~ILfIDEIDaL~~~r~~~~~~ 440 (811)
+ .+ |.....+.++.++-. .++.+ ......+||||||+.+-
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 0 00 111111111111110 01111 01123599999999882
Q ss_pred CCchHHHHHHHHHHHhhhcC-----------CCCCcEEEEecCCCCc-ccchhhcCCCCcceeeeccCCCH-HHHHHHHH
Q 047690 441 GANDERESTLNQLLVEMDGF-----------GTTAGVVVIAGTNRPD-ILDKALLRPGRFDRQITIDKPDI-KGRDQIFQ 507 (811)
Q Consensus 441 ~~~~e~~~tLnqLL~emDg~-----------~~~~~VIVIaaTN~pd-~LDpALlRpGRFdr~I~v~~Pd~-~eR~eIL~ 507 (811)
. .+...|+..|+.- .....+++|+++|..+ .++++++. ||...+.++.|.. ++|.+|++
T Consensus 142 ---~---~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~ 213 (334)
T PRK13407 142 ---D---HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIR 213 (334)
T ss_pred ---H---HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 2 3444455545421 1235789999999655 58999999 9999999998866 88999998
Q ss_pred HHHhhcc----C---------------------------CCCCchhhhHHHhhCC-CCcHHHHHHHHHHHHHHHHHcCCC
Q 047690 508 VYLKKIK----L---------------------------DHEPSYYSQRLAALTP-GFAGADIANVCNEAALIAARGENS 555 (811)
Q Consensus 508 ~~l~~~~----l---------------------------~~~~d~~l~~LA~~t~-GfSgaDL~~LvneAal~Aar~~~~ 555 (811)
....... . +...-.++..++..+. .-.-++|. +++.|...|+.+++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~ 292 (334)
T PRK13407 214 RRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAE 292 (334)
T ss_pred HhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCC
Confidence 7542110 0 0000011222333333 12345666 889899999999999
Q ss_pred ccCHHHHHHHHHHHh
Q 047690 556 QVTMEHFEAAIDRVI 570 (811)
Q Consensus 556 ~It~ed~~~Al~rvi 570 (811)
.|+.+|+..+..-++
T Consensus 293 ~V~~~Di~~~~~~vl 307 (334)
T PRK13407 293 AVGRSHLRSVATMAL 307 (334)
T ss_pred eeCHHHHHHHHHHhh
Confidence 999999988875554
No 130
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.45 E-value=1.7e-12 Score=138.21 Aligned_cols=182 Identities=23% Similarity=0.275 Sum_probs=130.2
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC------eEEeechhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP------FLSISGSDF 395 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp------fi~vs~s~~ 395 (811)
+-+|+|++|++.+.+.|+.-+.. +.--.+|+|||||||||+.|+++|.++..| +...+.++.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc
Confidence 45899999999999999987752 122358999999999999999999998662 344455554
Q ss_pred hhhhhcCchhHHHHHHHHHHhc------CC----eEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCc
Q 047690 396 MEMFVGVGPSRVRNLFQEARQC------AP----SIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAG 465 (811)
Q Consensus 396 ~~~~vG~~~~~vr~lF~~A~~~------aP----~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~ 465 (811)
...- ....+++. |++.... .| -|++|||+|.+.. .+.+.|...|+.+. ..
T Consensus 100 rGis--vvr~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts---------------daq~aLrr~mE~~s--~~ 159 (346)
T KOG0989|consen 100 RGIS--VVREKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSMTS---------------DAQAALRRTMEDFS--RT 159 (346)
T ss_pred cccc--chhhhhcC-HHHHhhccccccCCCCCcceEEEEechhhhhH---------------HHHHHHHHHHhccc--cc
Confidence 3322 22223322 3322211 12 4999999999942 34567777888754 45
Q ss_pred EEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHH
Q 047690 466 VVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCN 543 (811)
Q Consensus 466 VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~Lvn 543 (811)
+++|..||.++.|.+.+.+ |+. .+.|+..+.+.....|+....+.+++.+.+. +..|+..+.| ||+..+.
T Consensus 160 trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~a-l~~I~~~S~G----dLR~Ait 229 (346)
T KOG0989|consen 160 TRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDA-LKLIAKISDG----DLRRAIT 229 (346)
T ss_pred eEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCC----cHHHHHH
Confidence 6677778999999999988 874 7788888888888899999998888877665 5778887765 5554443
No 131
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.44 E-value=3.7e-12 Score=136.19 Aligned_cols=191 Identities=22% Similarity=0.235 Sum_probs=118.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechh------hhhhhhcCchhHHHH--------------------HHH
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSD------FMEMFVGVGPSRVRN--------------------LFQ 412 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~------~~~~~vG~~~~~vr~--------------------lF~ 412 (811)
...+||+||||||||++|+++|..++.|++.++|.. ++..+.+.....+.+ .+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 356899999999999999999999999999998754 332232221111111 112
Q ss_pred HHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh----cCC-------CCCcEEEEecCCCCc-----
Q 047690 413 EARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD----GFG-------TTAGVVVIAGTNRPD----- 476 (811)
Q Consensus 413 ~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD----g~~-------~~~~VIVIaaTN~pd----- 476 (811)
.|.. .+.+|+|||||.+ +.+....|..+|.+-. +.. ...++.||+|+|...
T Consensus 101 ~A~~-~g~~lllDEi~r~------------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRS------------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred HHHH-cCCEEEEcchhhC------------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 2222 3469999999887 2334444555554310 000 123677999999763
Q ss_pred ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhh------CCCCcHHHHHHHHHHHHHHHH
Q 047690 477 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAAL------TPGFAGADIANVCNEAALIAA 550 (811)
Q Consensus 477 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~------t~GfSgaDL~~LvneAal~Aa 550 (811)
.++++|++ || ..+.++.|+.++-.+|++.+.. .+...-..+-.++.. ....+ ++.++.-|...++
T Consensus 168 ~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~~~~~~ 238 (262)
T TIGR02640 168 ETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSG---LRASLMIAEVATQ 238 (262)
T ss_pred cccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCc---HHHHHHHHHHHHH
Confidence 57899999 98 6899999999999999998752 222111011111111 11223 4444444444444
Q ss_pred HcCCCccCHHHHHHHHHHHhc
Q 047690 551 RGENSQVTMEHFEAAIDRVIG 571 (811)
Q Consensus 551 r~~~~~It~ed~~~Al~rvi~ 571 (811)
......++.+||.+....|+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 239 QDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred cCCCCCCCcHHHHHHHHHHhc
Confidence 455678899999988877654
No 132
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.44 E-value=2.2e-12 Score=134.47 Aligned_cols=200 Identities=20% Similarity=0.285 Sum_probs=124.5
Q ss_pred CCccccccc-cc--hHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-----CCCeEEeec
Q 047690 321 NKVYFRDVA-GC--DEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSISG 392 (811)
Q Consensus 321 ~~v~f~dV~-G~--eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs~ 392 (811)
++.||++.+ |. +.+...++.+.+ ++.. .-..++||||+|+|||+|++|+++++ +..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~---~~~~-------~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAE---NPGE-------RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHH---STTT-------SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHh---cCCC-------CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 467899975 53 334444444443 2221 12358999999999999999999874 678999999
Q ss_pred hhhhhhhhcCch-hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEec
Q 047690 393 SDFMEMFVGVGP-SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAG 471 (811)
Q Consensus 393 s~~~~~~vG~~~-~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaa 471 (811)
.+|...+..... ..+..+.... . ...+|+||++|.+..+ ...+ ..|+..++.+....+.+|+++
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~~~-~-~~DlL~iDDi~~l~~~----------~~~q---~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKDRL-R-SADLLIIDDIQFLAGK----------QRTQ---EELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHH-C-TSSEEEEETGGGGTTH----------HHHH---HHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHcccchhhhhhh-h-cCCEEEEecchhhcCc----------hHHH---HHHHHHHHHHHhhCCeEEEEe
Confidence 999876543221 1222222222 2 3469999999999422 2223 333333343434556677777
Q ss_pred CCCCcc---cchhhcCCCCcce--eeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHH
Q 047690 472 TNRPDI---LDKALLRPGRFDR--QITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAA 546 (811)
Q Consensus 472 TN~pd~---LDpALlRpGRFdr--~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAa 546 (811)
...|.. +++.|.+ ||.. .+.+..|+.+.|.+|++..+...++..+.+. ++.|+...++ +.++|..+++...
T Consensus 138 ~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v-~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEV-IEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp SS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHH-HHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred CCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHH-HHHHHHhhcC-CHHHHHHHHHHHH
Confidence 677765 4677777 7754 7889999999999999999998888766554 5677777654 7888888888754
Q ss_pred HHH
Q 047690 547 LIA 549 (811)
Q Consensus 547 l~A 549 (811)
..+
T Consensus 214 ~~~ 216 (219)
T PF00308_consen 214 AYA 216 (219)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 133
>PRK06620 hypothetical protein; Validated
Probab=99.43 E-value=4.3e-12 Score=131.95 Aligned_cols=196 Identities=15% Similarity=0.176 Sum_probs=127.7
Q ss_pred cCCCccccccccch---HhHHHHHHHHHHhcCchhhhhcCCCCC--CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeech
Q 047690 319 AKNKVYFRDVAGCD---EAKQEIMEFVHFLKNPRKYEDLGAKIP--KGALLVGPPGTGKTLLAKATAGESGVPFLSISGS 393 (811)
Q Consensus 319 ~~~~v~f~dV~G~e---eak~eL~e~v~~Lk~p~~~~~lg~~~p--kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s 393 (811)
..++.+|++.+-.+ .+...++++.+ .| +. .| ..++||||||||||+|++++++..+..++. ..
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~---~~------~~-~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~ 76 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQC---GF------GV-NPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DI 76 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHH---cc------cc-CCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hh
Confidence 34567899866443 35555555443 12 11 23 579999999999999999999988754332 11
Q ss_pred hhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC
Q 047690 394 DFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN 473 (811)
Q Consensus 394 ~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN 473 (811)
... ...+ . ...+|+|||||.+. .. .+-.++..+ ..+...+||+++.
T Consensus 77 ~~~-----------~~~~----~-~~d~lliDdi~~~~-----------~~----~lf~l~N~~---~e~g~~ilits~~ 122 (214)
T PRK06620 77 FFN-----------EEIL----E-KYNAFIIEDIENWQ-----------EP----ALLHIFNII---NEKQKYLLLTSSD 122 (214)
T ss_pred hhc-----------hhHH----h-cCCEEEEeccccch-----------HH----HHHHHHHHH---HhcCCEEEEEcCC
Confidence 110 1111 1 23699999999540 11 222232222 2345678888887
Q ss_pred CCcc--cchhhcCCCCcc--eeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHH
Q 047690 474 RPDI--LDKALLRPGRFD--RQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIA 549 (811)
Q Consensus 474 ~pd~--LDpALlRpGRFd--r~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~A 549 (811)
.|.. + |+|++ |+. ..+.+..|+.+.+..+++.++...++..+.+. ++.|+....+ +.+.+.++++.....+
T Consensus 123 ~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev-~~~L~~~~~~-d~r~l~~~l~~l~~~~ 197 (214)
T PRK06620 123 KSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI-IDFLLVNLPR-EYSKIIEILENINYFA 197 (214)
T ss_pred Cccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 6664 5 78888 885 36899999999999999999887665554443 5778887765 7788888888754333
Q ss_pred HHcCCCccCHHHHHHHH
Q 047690 550 ARGENSQVTMEHFEAAI 566 (811)
Q Consensus 550 ar~~~~~It~ed~~~Al 566 (811)
. ..++.||...+.+++
T Consensus 198 ~-~~~~~it~~~~~~~l 213 (214)
T PRK06620 198 L-ISKRKITISLVKEVL 213 (214)
T ss_pred H-HcCCCCCHHHHHHHh
Confidence 3 344679998888775
No 134
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.42 E-value=3.3e-12 Score=141.27 Aligned_cols=223 Identities=20% Similarity=0.241 Sum_probs=141.2
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-------CCCeEEee-
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-------GVPFLSIS- 391 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-------gvpfi~vs- 391 (811)
.....|++|+|++++|..|.-.+. +|. ..|+||.||+|||||++||+++..+ +.||..-.
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~---~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVI---DPK---------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhcc---CCC---------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 346789999999999999876543 332 2589999999999999999998765 23443000
Q ss_pred -----chhhhh-------------------hhhcCchhHH------HHHHHHHH---------hcCCeEEEEcCcchhhh
Q 047690 392 -----GSDFME-------------------MFVGVGPSRV------RNLFQEAR---------QCAPSIIFIDEIDAIGR 432 (811)
Q Consensus 392 -----~s~~~~-------------------~~vG~~~~~v------r~lF~~A~---------~~aP~ILfIDEIDaL~~ 432 (811)
|+++.. .-.+.++.++ ...|.... +...++||||||+.+.
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~- 157 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 157 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC-
Confidence 011111 0112233321 22222221 1123699999999882
Q ss_pred hcCCCCCCCCchHHHHHHHHHHHhhhc---------C--CCCCcEEEEecCCCCc-ccchhhcCCCCcceeeeccCCC-H
Q 047690 433 ARGRGGFSGANDERESTLNQLLVEMDG---------F--GTTAGVVVIAGTNRPD-ILDKALLRPGRFDRQITIDKPD-I 499 (811)
Q Consensus 433 ~r~~~~~~~~~~e~~~tLnqLL~emDg---------~--~~~~~VIVIaaTN~pd-~LDpALlRpGRFdr~I~v~~Pd-~ 499 (811)
.. +...|+..|+. . ....++++|++.|..+ .+.++++. ||..++.+..|+ .
T Consensus 158 -----------~~---~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~ 221 (350)
T CHL00081 158 -----------DH---LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDP 221 (350)
T ss_pred -----------HH---HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCCh
Confidence 22 33334444432 1 1234789999888655 69999999 999999999997 5
Q ss_pred HHHHHHHHHHHhhc-------------------------------cCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHH
Q 047690 500 KGRDQIFQVYLKKI-------------------------------KLDHEPSYYSQRLAALTPGFAGADIANVCNEAALI 548 (811)
Q Consensus 500 ~eR~eIL~~~l~~~-------------------------------~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~ 548 (811)
+.+.+|++...... .++...-.++..++..+.--+.+--..+++-|...
T Consensus 222 ~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~ 301 (350)
T CHL00081 222 ELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKAL 301 (350)
T ss_pred HHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHH
Confidence 89999998753211 00000011123334444334556566677778888
Q ss_pred HHHcCCCccCHHHHHHHHHHHhc
Q 047690 549 AARGENSQVTMEHFEAAIDRVIG 571 (811)
Q Consensus 549 Aar~~~~~It~ed~~~Al~rvi~ 571 (811)
|+.+++..|+.+|+..+..-++.
T Consensus 302 Aal~GR~~V~pdDv~~~a~~vL~ 324 (350)
T CHL00081 302 AAFEGRTEVTPKDIFKVITLCLR 324 (350)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999887754
No 135
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.42 E-value=4.3e-12 Score=137.06 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=78.4
Q ss_pred EEEecCCC------------CcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCc
Q 047690 467 VVIAGTNR------------PDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFA 534 (811)
Q Consensus 467 IVIaaTN~------------pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfS 534 (811)
+||.|||+ |.-++..|+. |+ ..|...+++.++.++|++..++...+..+.+. ++.++.....-|
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~A-le~L~~ig~etS 397 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDA-LEYLTDIGEETS 397 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHH-HHHHHhhchhhh
Confidence 56666776 4456666766 55 46777889999999999999988777766554 577887777777
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 047690 535 GADIANVCNEAALIAARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 535 gaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rv 569 (811)
-+-..+|+.-|...|.++++..|..+|++.|-+-.
T Consensus 398 LRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF 432 (450)
T COG1224 398 LRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELF 432 (450)
T ss_pred HHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHH
Confidence 77778888889999999999999999999997644
No 136
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.4e-11 Score=137.67 Aligned_cols=218 Identities=20% Similarity=0.263 Sum_probs=152.5
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC-----eEEeechhhhhhh--
Q 047690 327 DVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP-----FLSISGSDFMEMF-- 399 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp-----fi~vs~s~~~~~~-- 399 (811)
.+.+-++.++.+..++... +....|.++++|||||||||++++.+++++.-+ +++|||-...+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~--------~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 18 ELPHREEEINQLASFLAPA--------LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred cccccHHHHHHHHHHHHHH--------hcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 3889999999888886642 223346679999999999999999999987433 8999996553321
Q ss_pred -------------hcCchh-HHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCC
Q 047690 400 -------------VGVGPS-RVRNLFQEARQ-CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTA 464 (811)
Q Consensus 400 -------------vG~~~~-~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~ 464 (811)
.|.... ....+++.... ...-||++||+|.|..+.+ .++..|+...+.. ..
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~~--~~ 155 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGEN--KV 155 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhcccc--ce
Confidence 111111 22333333222 3456999999999964321 5777777776654 56
Q ss_pred cEEEEecCCCC---cccchhhcCCCCcc-eeeeccCCCHHHHHHHHHHHHhhccCCCCC-chhhh---HHHhhCCCCcHH
Q 047690 465 GVVVIAGTNRP---DILDKALLRPGRFD-RQITIDKPDIKGRDQIFQVYLKKIKLDHEP-SYYSQ---RLAALTPGFAGA 536 (811)
Q Consensus 465 ~VIVIaaTN~p---d~LDpALlRpGRFd-r~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~-d~~l~---~LA~~t~GfSga 536 (811)
+|.+|+.+|.. +.+||.+.+ +|. ..|.|++++.++..+||+......-.+... +..++ .++....| ..+
T Consensus 156 ~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR 232 (366)
T COG1474 156 KVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DAR 232 (366)
T ss_pred eEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHH
Confidence 78999999975 468888887 553 458999999999999999988753222111 11123 33344444 555
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 047690 537 DIANVCNEAALIAARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 537 DL~~LvneAal~Aar~~~~~It~ed~~~Al~rv 569 (811)
-...+|+.|+..|.+++...++.+|+..|.+.+
T Consensus 233 ~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 233 KAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 666789999999999999999999999995443
No 137
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.40 E-value=5e-12 Score=153.16 Aligned_cols=163 Identities=26% Similarity=0.389 Sum_probs=116.4
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhcCC---CCCCc-EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh---
Q 047690 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLGA---KIPKG-ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM--- 398 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~---~~pkG-vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~--- 398 (811)
+.|+|++++++.+.+.+...+ .|. .-|.+ +||+||||||||++|+++|..++.+++.++++++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~-------~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSR-------AGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHh-------cCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 358999999999988876532 111 12444 7899999999999999999999999999999988653
Q ss_pred --hhcCch-----hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC---------C
Q 047690 399 --FVGVGP-----SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG---------T 462 (811)
Q Consensus 399 --~vG~~~-----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~---------~ 462 (811)
..|..+ .....+.+..+.+..+||+|||||.+. .. ..+.|++.||... .
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~------------~~---~~~~Ll~~ld~g~~~d~~g~~vd 591 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH------------PD---IYNILLQVMDYATLTDNNGRKAD 591 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC------------HH---HHHHHHHhhccCeeecCCCcccC
Confidence 222211 122234444455667899999999872 22 4455555555321 1
Q ss_pred CCcEEEEecCCCCc-------------------------ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhh
Q 047690 463 TAGVVVIAGTNRPD-------------------------ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKK 512 (811)
Q Consensus 463 ~~~VIVIaaTN~pd-------------------------~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~ 512 (811)
-.++++|+|||... .+.|.++. |||.+|.|.+.+.++..+|++..+..
T Consensus 592 ~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 592 FRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred CCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 23578899988631 14566766 99999999999999999999998864
No 138
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.40 E-value=4.6e-12 Score=139.89 Aligned_cols=219 Identities=21% Similarity=0.236 Sum_probs=137.4
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-------CCCeE--------
Q 047690 324 YFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-------GVPFL-------- 388 (811)
Q Consensus 324 ~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-------gvpfi-------- 388 (811)
-|..|+|++++|..|.-.+- +|. ..+++|.|+||||||++++++++.+ +.|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~~---~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVI---DPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhc---CCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 48899999999988754332 221 2479999999999999999999866 33332
Q ss_pred -Eeechh----------------hhhhhhcCchhHHHHHHH--HH-------------HhcCCeEEEEcCcchhhhhcCC
Q 047690 389 -SISGSD----------------FMEMFVGVGPSRVRNLFQ--EA-------------RQCAPSIIFIDEIDAIGRARGR 436 (811)
Q Consensus 389 -~vs~s~----------------~~~~~vG~~~~~vr~lF~--~A-------------~~~aP~ILfIDEIDaL~~~r~~ 436 (811)
..+|.. |.++-.+.++.++-.... .+ .+....+||||||+.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~----- 144 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE----- 144 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC-----
Confidence 111111 111112222222211111 10 01224699999999882
Q ss_pred CCCCCCchHHHHHHHHHHHhhhcC-----------CCCCcEEEEecCCCCc-ccchhhcCCCCcceeeeccCCCH-HHHH
Q 047690 437 GGFSGANDERESTLNQLLVEMDGF-----------GTTAGVVVIAGTNRPD-ILDKALLRPGRFDRQITIDKPDI-KGRD 503 (811)
Q Consensus 437 ~~~~~~~~e~~~tLnqLL~emDg~-----------~~~~~VIVIaaTN~pd-~LDpALlRpGRFdr~I~v~~Pd~-~eR~ 503 (811)
.. +...|+..|+.- ....++++|+++|..+ .++++|+. ||..++.++.|+. ++|.
T Consensus 145 -------~~---~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~ 212 (337)
T TIGR02030 145 -------DH---LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRV 212 (337)
T ss_pred -------HH---HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHH
Confidence 22 334444444321 1134689999988655 69999999 9999999998875 8889
Q ss_pred HHHHHHHhhc-------------------------------cCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 047690 504 QIFQVYLKKI-------------------------------KLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARG 552 (811)
Q Consensus 504 eIL~~~l~~~-------------------------------~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~ 552 (811)
+|++...... .++...-.++..++..+..-+.+--..+++-|...|+.+
T Consensus 213 eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 292 (337)
T TIGR02030 213 EIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFE 292 (337)
T ss_pred HHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHc
Confidence 9998743210 000001112233444444335566677888888899999
Q ss_pred CCCccCHHHHHHHHHHHhc
Q 047690 553 ENSQVTMEHFEAAIDRVIG 571 (811)
Q Consensus 553 ~~~~It~ed~~~Al~rvi~ 571 (811)
++..|+.+|+..+..-++.
T Consensus 293 GR~~V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 293 GRTEVTVDDIRRVAVLALR 311 (337)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887754
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.3e-11 Score=146.36 Aligned_cols=208 Identities=19% Similarity=0.262 Sum_probs=142.6
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEE---------eec
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLS---------ISG 392 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~---------vs~ 392 (811)
+.+|+||+|++.+++.|...+. ..++|..+|||||+|+|||++|+++|+.+.+.-.. -+|
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~-----------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIA-----------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 4689999999999999988876 23568889999999999999999999987532110 011
Q ss_pred hhhhhh-------hhc---CchhHHHHHHHHHHhcC----CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh
Q 047690 393 SDFMEM-------FVG---VGPSRVRNLFQEARQCA----PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD 458 (811)
Q Consensus 393 s~~~~~-------~vG---~~~~~vr~lF~~A~~~a----P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD 458 (811)
..|.+. +-+ .+...++.+...+.... .-|++|||+|.+. ....+.|+..|+
T Consensus 82 ~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls---------------~~a~naLLK~LE 146 (614)
T PRK14971 82 VAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS---------------QAAFNAFLKTLE 146 (614)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC---------------HHHHHHHHHHHh
Confidence 111110 011 12345777776664322 2499999999982 134677777777
Q ss_pred cCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHH
Q 047690 459 GFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADI 538 (811)
Q Consensus 459 g~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL 538 (811)
. +....++|.+|+.+..|-+.|++ |+ ..+.|..++.++....++..+...++..+.+. +..|+..+.| +.+++
T Consensus 147 e--pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~a-l~~La~~s~g-dlr~a 219 (614)
T PRK14971 147 E--PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEA-LNVIAQKADG-GMRDA 219 (614)
T ss_pred C--CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CHHHH
Confidence 6 34456666666667888889988 77 57999999999999999998888776655432 4677777754 56666
Q ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 539 ANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 539 ~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
.++++....++ +.. |+.+++.+.+
T Consensus 220 l~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 220 LSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 66665544333 322 7877776654
No 140
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.39 E-value=2.9e-12 Score=154.42 Aligned_cols=165 Identities=24% Similarity=0.328 Sum_probs=115.0
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhcCCCCCC-cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh-----hhh
Q 047690 327 DVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPK-GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME-----MFV 400 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pk-GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~-----~~v 400 (811)
.|+|++++++.|.+.+...+..-. ....|. .+||+||||||||.+|+++|..++.+|+.++|+++.+ .+.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~----~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG----HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc----CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 489999999999998875321000 011243 5899999999999999999999999999999998854 233
Q ss_pred cCchhH-----HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcC--C-------CCCcE
Q 047690 401 GVGPSR-----VRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGF--G-------TTAGV 466 (811)
Q Consensus 401 G~~~~~-----vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~--~-------~~~~V 466 (811)
|..+.. -..+.+..+.+..|||||||||.+. . .+.+.|+..||.- . .-.++
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~------------~---~v~~~LLq~ld~G~ltd~~g~~vd~rn~ 599 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------------P---DVFNLLLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh------------H---HHHHHHHHHHhcCeeecCCCceecCCCc
Confidence 322111 1122333345556899999999983 2 2455555555521 1 11468
Q ss_pred EEEecCCCC-------------------------cccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhh
Q 047690 467 VVIAGTNRP-------------------------DILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKK 512 (811)
Q Consensus 467 IVIaaTN~p-------------------------d~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~ 512 (811)
++|+|||.- ..+.|.++. |+|.+|.|++.+.++..+|+..++..
T Consensus 600 iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred EEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 899999932 124577777 99999999999999999999887754
No 141
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.38 E-value=9.6e-12 Score=130.28 Aligned_cols=194 Identities=21% Similarity=0.314 Sum_probs=136.0
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFM 396 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~ 396 (811)
...+.+++++|+++.|+.|.+....+- ...+..++||+|++|||||+++||+..+. |..++.|+..++.
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl--------~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFL--------QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHH--------cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 457899999999999999988776432 23456789999999999999999999866 7788888877763
Q ss_pred hhhhcCchhHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcC--CCCCcEEEEecCC
Q 047690 397 EMFVGVGPSRVRNLFQEARQ-CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGF--GTTAGVVVIAGTN 473 (811)
Q Consensus 397 ~~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~--~~~~~VIVIaaTN 473 (811)
.+..++...+. ..+-|||+|++- + .. .+.. ...|-..|||- ....+|++.||+|
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs-F---------e~-~d~~---yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS-F---------EE-GDTE---YKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC-C---------CC-CcHH---HHHHHHHhcCccccCCCcEEEEEecc
Confidence 34555665553 345799999962 1 12 2222 24444445653 3457899999999
Q ss_pred CCcccc---------------------hhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCch---hhhHHHhh
Q 047690 474 RPDILD---------------------KALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSY---YSQRLAAL 529 (811)
Q Consensus 474 ~pd~LD---------------------pALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~---~l~~LA~~ 529 (811)
+-..+. ..+--..||...|.|..|+.++-.+|++.++...++..+.+. .....|..
T Consensus 150 RRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~ 229 (249)
T PF05673_consen 150 RRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALR 229 (249)
T ss_pred hhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 733221 111112399999999999999999999999998877766321 12344555
Q ss_pred CCCCcHHHHHHHHHH
Q 047690 530 TPGFAGADIANVCNE 544 (811)
Q Consensus 530 t~GfSgaDL~~Lvne 544 (811)
..|.||+-..+.++.
T Consensus 230 rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 230 RGGRSGRTARQFIDD 244 (249)
T ss_pred cCCCCHHHHHHHHHH
Confidence 667777766665553
No 142
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.37 E-value=2.8e-11 Score=135.60 Aligned_cols=228 Identities=18% Similarity=0.231 Sum_probs=156.9
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-----CCCeEEeechh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSISGSD 394 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs~s~ 394 (811)
.++.+|++.+.-+.-.....-....-..|.. .-..++||||.|+|||+|++|+++++ +..+++++..+
T Consensus 81 ~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~ 153 (408)
T COG0593 81 NPKYTFDNFVVGPSNRLAYAAAKAVAENPGG-------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSED 153 (408)
T ss_pred CCCCchhheeeCCchHHHHHHHHHHHhccCC-------cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHH
Confidence 4678899976543322222222222222211 23458999999999999999999876 34688999999
Q ss_pred hhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCC
Q 047690 395 FMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNR 474 (811)
Q Consensus 395 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~ 474 (811)
|...++......-.+-|+.-. .-.+++||+|+.+..+. ....+...++|.+. ...+.||+.+...
T Consensus 154 f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~------~~qeefFh~FN~l~-------~~~kqIvltsdr~ 218 (408)
T COG0593 154 FTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE------RTQEEFFHTFNALL-------ENGKQIVLTSDRP 218 (408)
T ss_pred HHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh------hHHHHHHHHHHHHH-------hcCCEEEEEcCCC
Confidence 987776554333333454444 34699999999995432 12344455566554 3445788888777
Q ss_pred Cccc---chhhcCCCCcce--eeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHH
Q 047690 475 PDIL---DKALLRPGRFDR--QITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIA 549 (811)
Q Consensus 475 pd~L---DpALlRpGRFdr--~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~A 549 (811)
|..+ +|.|.+ ||.. .+.+.+||.+.|..||+......++..+.+. +..+|.... -+.++|..+++.....|
T Consensus 219 P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev-~~~la~~~~-~nvReLegaL~~l~~~a 294 (408)
T COG0593 219 PKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEV-LEFLAKRLD-RNVRELEGALNRLDAFA 294 (408)
T ss_pred chhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHhh-ccHHHHHHHHHHHHHHH
Confidence 7765 588888 8864 5788899999999999998888777665544 466776655 37889998888877666
Q ss_pred HHcCCCccCHHHHHHHHHHHhcCcc
Q 047690 550 ARGENSQVTMEHFEAAIDRVIGGLE 574 (811)
Q Consensus 550 ar~~~~~It~ed~~~Al~rvi~g~e 574 (811)
...+ ..||.+.+.+++..+....+
T Consensus 295 ~~~~-~~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 295 LFTK-RAITIDLVKEILKDLLRAGE 318 (408)
T ss_pred HhcC-ccCcHHHHHHHHHHhhcccc
Confidence 6544 48999999999987765433
No 143
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.33 E-value=7.4e-12 Score=142.17 Aligned_cols=217 Identities=25% Similarity=0.348 Sum_probs=140.0
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME 397 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~ 397 (811)
...+|+||+|.+++..++.+.++. .++.+..|||.|.+||||.++|++|++.+ +-||+.+||..+-+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKR----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHh----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 467899999999999999998874 34556789999999999999999999865 77999999976543
Q ss_pred h-----hhcC--------chhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh--cCCC
Q 047690 398 M-----FVGV--------GPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD--GFGT 462 (811)
Q Consensus 398 ~-----~vG~--------~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD--g~~~ 462 (811)
. ..|. ...--..+|+.|.. +.||+|||-.+ ....+.-|...|++-+ ....
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem------------pl~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM------------PLPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC------------CHHHHHHHHHHHhhceEEecCC
Confidence 3 1222 11113445655533 69999999776 3344555556665521 2222
Q ss_pred ----CCcEEEEecCCCCcccchhhcCCCCcce-------eeeccCCCHHHHHHHH----HHHHhh----ccCCCC-C-ch
Q 047690 463 ----TAGVVVIAGTNRPDILDKALLRPGRFDR-------QITIDKPDIKGRDQIF----QVYLKK----IKLDHE-P-SY 521 (811)
Q Consensus 463 ----~~~VIVIaaTN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~eIL----~~~l~~----~~l~~~-~-d~ 521 (811)
.-+|-||||||+ .|..++.. |+|-. ++.+..|...+|.+-+ ..++.+ .+.... . +.
T Consensus 375 t~~~~vDVRIIAATN~--nL~~~i~~-G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 375 TKPIPVDVRIIAATNR--NLEKMIAE-GTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCceeeEEEEEeccCc--CHHHHHhc-CcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 236999999997 44444443 66532 5778889998887633 233332 222211 1 11
Q ss_pred hhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHH-HHHH
Q 047690 522 YSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFE-AAID 567 (811)
Q Consensus 522 ~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~-~Al~ 567 (811)
.+..+.+..---+-++|+|++.++...+ .....|+.+|+. .++.
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~~~--~~~~~I~~~~lp~~~l~ 496 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVNLV--ESDGLIDADDLPAFALE 496 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhcc--CCcceeehhhcchhhhc
Confidence 1233333333335689999999887643 344458877777 5544
No 144
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.33 E-value=1.3e-11 Score=147.10 Aligned_cols=216 Identities=23% Similarity=0.281 Sum_probs=135.6
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc--------------------
Q 047690 324 YFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-------------------- 383 (811)
Q Consensus 324 ~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-------------------- 383 (811)
-|.+|+|++.++..|.-.+. +|. ..+|||+|+||||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av---~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV---DPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhh---CCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 48899999999977754332 221 1369999999999999999999876
Q ss_pred ---------------CCCeEEeechhhhhhhhcCchhHHHHHHHHH---------HhcCCeEEEEcCcchhhhhcCCCCC
Q 047690 384 ---------------GVPFLSISGSDFMEMFVGVGPSRVRNLFQEA---------RQCAPSIIFIDEIDAIGRARGRGGF 439 (811)
Q Consensus 384 ---------------gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A---------~~~aP~ILfIDEIDaL~~~r~~~~~ 439 (811)
..||+.+.++......+|.. .+...+... .....+|||||||+.+-
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~--d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~-------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSL--DIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD-------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcc--cHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC--------
Confidence 35666665554333333321 011111100 01123599999999982
Q ss_pred CCCchHHHHHHHHHHHhhhcC-----------CCCCcEEEEecCCCC-cccchhhcCCCCcceeeeccCCC-HHHHHHHH
Q 047690 440 SGANDERESTLNQLLVEMDGF-----------GTTAGVVVIAGTNRP-DILDKALLRPGRFDRQITIDKPD-IKGRDQIF 506 (811)
Q Consensus 440 ~~~~~e~~~tLnqLL~emDg~-----------~~~~~VIVIaaTN~p-d~LDpALlRpGRFdr~I~v~~Pd-~~eR~eIL 506 (811)
. .+.+.|+..|+.- ....+++||+++|.. ..|.++|+. ||+.+|.++.|. .+++.+|+
T Consensus 140 ----~---~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il 210 (633)
T TIGR02442 140 ----D---HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEII 210 (633)
T ss_pred ----H---HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHH
Confidence 2 3445555555421 112468999999954 368899999 999889888764 57777777
Q ss_pred HHHHhhcc-------------------------CCC--C-CchhhhHHHhhC--CCC-cHHHHHHHHHHHHHHHHHcCCC
Q 047690 507 QVYLKKIK-------------------------LDH--E-PSYYSQRLAALT--PGF-AGADIANVCNEAALIAARGENS 555 (811)
Q Consensus 507 ~~~l~~~~-------------------------l~~--~-~d~~l~~LA~~t--~Gf-SgaDL~~LvneAal~Aar~~~~ 555 (811)
+..+.... +.. . .+..++.++..+ .|. +.+-...+++-|..+|+.+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~ 290 (633)
T TIGR02442 211 RRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRR 290 (633)
T ss_pred HHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCC
Confidence 65332100 000 0 011112222221 233 3445556777777888999999
Q ss_pred ccCHHHHHHHHHHHh
Q 047690 556 QVTMEHFEAAIDRVI 570 (811)
Q Consensus 556 ~It~ed~~~Al~rvi 570 (811)
.|+.+|+..|+.-++
T Consensus 291 ~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 291 RVTAEDVREAAELVL 305 (633)
T ss_pred cCCHHHHHHHHHHHh
Confidence 999999999998885
No 145
>PRK09087 hypothetical protein; Validated
Probab=99.31 E-value=5.5e-11 Score=124.70 Aligned_cols=172 Identities=18% Similarity=0.182 Sum_probs=116.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCC
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFS 440 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~ 440 (811)
.++|+||+|+|||+|+++++...++. +++..+|...+. ..... .+|+|||+|.+.
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~~-----------~~~~~---~~l~iDDi~~~~--------- 100 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDAA-----------NAAAE---GPVLIEDIDAGG--------- 100 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHHH-----------Hhhhc---CeEEEECCCCCC---------
Confidence 48999999999999999999887654 444444432221 11111 478999999762
Q ss_pred CCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc---cchhhcCCCCcc--eeeeccCCCHHHHHHHHHHHHhhccC
Q 047690 441 GANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI---LDKALLRPGRFD--RQITIDKPDIKGRDQIFQVYLKKIKL 515 (811)
Q Consensus 441 ~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~eIL~~~l~~~~l 515 (811)
....+...++|.+. .....+||+++..|.. ..+.|++ ||. ..+.+..|+.++|.+|++.+++..++
T Consensus 101 ~~~~~lf~l~n~~~-------~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~ 171 (226)
T PRK09087 101 FDETGLFHLINSVR-------QAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQL 171 (226)
T ss_pred CCHHHHHHHHHHHH-------hCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 11222223333322 3445677777766553 3677888 885 67999999999999999999988766
Q ss_pred CCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 047690 516 DHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 516 ~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rv 569 (811)
..+.+. ++.|+....+ +.+.+..+++.....+.. .++.||...+++++..+
T Consensus 172 ~l~~ev-~~~La~~~~r-~~~~l~~~l~~L~~~~~~-~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 172 YVDPHV-VYYLVSRMER-SLFAAQTIVDRLDRLALE-RKSRITRALAAEVLNEM 222 (226)
T ss_pred CCCHHH-HHHHHHHhhh-hHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHhh
Confidence 655443 5778887764 566666666665444443 34669999999988654
No 146
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.30 E-value=3.3e-11 Score=113.13 Aligned_cols=123 Identities=45% Similarity=0.666 Sum_probs=81.9
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhhhcCchhH---HHHHHHHHHhcCCeEEEEcCcchhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMFVGVGPSR---VRNLFQEARQCAPSIIFIDEIDAIGR 432 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~vG~~~~~---vr~lF~~A~~~aP~ILfIDEIDaL~~ 432 (811)
.+.++|+||||||||++++.+++.+ +.+++.+++.++........... ....+..+....+++|+|||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4579999999999999999999998 89999999987755432221111 12223344455689999999998721
Q ss_pred hcCCCCCCCCchHHHHHHHHHHHhhhcC-CCCCcEEEEecCCCCc--ccchhhcCCCCcceeeecc
Q 047690 433 ARGRGGFSGANDERESTLNQLLVEMDGF-GTTAGVVVIAGTNRPD--ILDKALLRPGRFDRQITID 495 (811)
Q Consensus 433 ~r~~~~~~~~~~e~~~tLnqLL~emDg~-~~~~~VIVIaaTN~pd--~LDpALlRpGRFdr~I~v~ 495 (811)
.....+.+++..+... ....++.+|+++|... .+++.+.. ||+..+.++
T Consensus 99 ------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 99 ------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred ------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1122333333332111 1135788888888776 67778877 998777665
No 147
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.30 E-value=1.3e-11 Score=134.95 Aligned_cols=138 Identities=17% Similarity=0.196 Sum_probs=101.7
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh--hhcCchh------H----HHHHHHHHHhcCCeEEEEcC
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM--FVGVGPS------R----VRNLFQEARQCAPSIIFIDE 426 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~--~vG~~~~------~----vr~lF~~A~~~aP~ILfIDE 426 (811)
.+.+||.||||||||++|+.+|.+++.|++.|++...... .+|...- . ....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4679999999999999999999999999999998776554 3443211 0 1123344443 468999999
Q ss_pred cchhhhhcCCCCCCCCchHHHHHHHHHHHh-----hhc----CCCCCcEEEEecCCCCc------------ccchhhcCC
Q 047690 427 IDAIGRARGRGGFSGANDERESTLNQLLVE-----MDG----FGTTAGVVVIAGTNRPD------------ILDKALLRP 485 (811)
Q Consensus 427 IDaL~~~r~~~~~~~~~~e~~~tLnqLL~e-----mDg----~~~~~~VIVIaaTN~pd------------~LDpALlRp 485 (811)
||.. ..+....|+.+|.. +++ +.....+.||||+|..+ .|+.|++.
T Consensus 143 in~a------------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 143 YDAG------------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhcc------------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 9986 23445566777653 111 22345789999999865 36899999
Q ss_pred CCcceeeeccCCCHHHHHHHHHHHHh
Q 047690 486 GRFDRQITIDKPDIKGRDQIFQVYLK 511 (811)
Q Consensus 486 GRFdr~I~v~~Pd~~eR~eIL~~~l~ 511 (811)
||-..+.++.|+.++-.+|+.....
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 9988889999999999999987654
No 148
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.29 E-value=6.7e-11 Score=144.99 Aligned_cols=159 Identities=28% Similarity=0.370 Sum_probs=113.1
Q ss_pred cccccchHhHHHHHHHHHHh----cCchhhhhcCCCCCCc-EEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh
Q 047690 326 RDVAGCDEAKQEIMEFVHFL----KNPRKYEDLGAKIPKG-ALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME 397 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~L----k~p~~~~~lg~~~pkG-vLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~ 397 (811)
+.|+|++++.+.+.+.+... .+| ..|.| +||+||||||||.+|+++|..+ ...++.++++++.+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~--------~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDP--------RKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCC--------CCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 46899999999998888652 222 23666 7999999999999999999987 45899999998865
Q ss_pred h------------hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC----
Q 047690 398 M------------FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG---- 461 (811)
Q Consensus 398 ~------------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~---- 461 (811)
. |+|..+.. .+....+++..|||+|||||.. +.. +.+.|++.+|.-.
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka------------~~~---v~~~Llq~ld~g~l~d~ 700 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKA------------HPD---VLELFYQVFDKGVMEDG 700 (852)
T ss_pred hhhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhc------------CHH---HHHHHHHHhhcceeecC
Confidence 4 33433221 2334445667799999999876 222 4445555554321
Q ss_pred -----CCCcEEEEecCCCCc-----------------------------ccchhhcCCCCcceeeeccCCCHHHHHHHHH
Q 047690 462 -----TTAGVVVIAGTNRPD-----------------------------ILDKALLRPGRFDRQITIDKPDIKGRDQIFQ 507 (811)
Q Consensus 462 -----~~~~VIVIaaTN~pd-----------------------------~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~ 507 (811)
.-.+.+||.|||... .+.|+++. |++ .|.|.+.+.++..+|+.
T Consensus 701 ~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~ 777 (852)
T TIGR03345 701 EGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVR 777 (852)
T ss_pred CCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHH
Confidence 114678888988411 14567777 887 88999999999999998
Q ss_pred HHHhh
Q 047690 508 VYLKK 512 (811)
Q Consensus 508 ~~l~~ 512 (811)
..+..
T Consensus 778 ~~L~~ 782 (852)
T TIGR03345 778 LKLDR 782 (852)
T ss_pred HHHHH
Confidence 88755
No 149
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.26 E-value=4e-11 Score=139.71 Aligned_cols=212 Identities=22% Similarity=0.333 Sum_probs=127.0
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHh-----------cCCCeEEee
Q 047690 323 VYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGE-----------SGVPFLSIS 391 (811)
Q Consensus 323 v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e-----------~gvpfi~vs 391 (811)
.+|++++|.+.+.+.+.+.+..+.. .+..|||+|++||||+++|++|... .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 5799999999999999988875322 3457999999999999999999887 467999999
Q ss_pred chhhhhh-----hhcCch--------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh
Q 047690 392 GSDFMEM-----FVGVGP--------SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD 458 (811)
Q Consensus 392 ~s~~~~~-----~vG~~~--------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD 458 (811)
|+.+.+. ..|... ..-..+|+.|. ..+||||||+.|- ...+..|..+|++-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp------------~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMP------------LPLQTRLLRVLEEKE 350 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCC------------HHHHHHHHhhhhcCe
Confidence 9876432 122111 01123454443 4799999999982 233444444544321
Q ss_pred --cCCC----CCcEEEEecCCCCcccchhhcCCCCcce-------eeeccCCCHHHHHH----HHHHHHhh----ccCCC
Q 047690 459 --GFGT----TAGVVVIAGTNRPDILDKALLRPGRFDR-------QITIDKPDIKGRDQ----IFQVYLKK----IKLDH 517 (811)
Q Consensus 459 --g~~~----~~~VIVIaaTN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----IL~~~l~~----~~l~~ 517 (811)
.... ..++-||++||.. |... ...|+|.. .+.+..|...+|.+ +++.++++ .+...
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~--L~~~-v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCD--LEED-VRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred EEecCCCceeccceEEEEecCCC--HHHH-HhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 1111 2356889998863 3322 23345542 47788899988876 34445544 22221
Q ss_pred CCchh------hhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 047690 518 EPSYY------SQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHF 562 (811)
Q Consensus 518 ~~d~~------l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~ 562 (811)
..+.. +..|....---+-++|+|++++++..+.......|+.+++
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 11110 0122222222356788888888776543222334555554
No 150
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.25 E-value=5e-11 Score=138.85 Aligned_cols=215 Identities=23% Similarity=0.336 Sum_probs=130.3
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM 398 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~ 398 (811)
..+|++++|.+.+.+.+.+.+..+.. .+..|||+|++||||+++|++|+... +.||+.++|..+-+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYAR----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 36799999999999999988875432 34579999999999999999998754 679999999876432
Q ss_pred -----hhcCch--------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh--cCCC-
Q 047690 399 -----FVGVGP--------SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD--GFGT- 462 (811)
Q Consensus 399 -----~vG~~~--------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD--g~~~- 462 (811)
..|... ..-..+|+.|. ..+|||||||.|- ...+..|..+|++-. ....
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp------------~~~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMP------------LPLQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCC------------HHHHHHHHHHHhcCcEEecCCC
Confidence 122110 01123444443 4799999999982 333444445554321 1111
Q ss_pred ---CCcEEEEecCCCCcccchhhcCCCCcce-------eeeccCCCHHHHHH----HHHHHHhhc----cCCCCCchhhh
Q 047690 463 ---TAGVVVIAGTNRPDILDKALLRPGRFDR-------QITIDKPDIKGRDQ----IFQVYLKKI----KLDHEPSYYSQ 524 (811)
Q Consensus 463 ---~~~VIVIaaTN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----IL~~~l~~~----~l~~~~d~~l~ 524 (811)
..++-+|++||.. +.. +...|+|.. .+.+..|+..+|.+ +++.++... ....+.+. ++
T Consensus 343 ~~~~~dvRiIaat~~~--l~~-~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a-~~ 418 (526)
T TIGR02329 343 EPVPVDVRVVAATHCA--LTT-AVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAA-AQ 418 (526)
T ss_pred ceeeecceEEeccCCC--HHH-HhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHH-HH
Confidence 1246788888863 221 122234432 46788898888876 344445433 22112111 12
Q ss_pred H-------HHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 047690 525 R-------LAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAA 565 (811)
Q Consensus 525 ~-------LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~A 565 (811)
. |....---+-++|++++++++..+.......|+.+|+...
T Consensus 419 ~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 419 VLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 2 3333333356788888888876653223456888876543
No 151
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.22 E-value=6.5e-11 Score=133.09 Aligned_cols=204 Identities=22% Similarity=0.313 Sum_probs=133.3
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME 397 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~ 397 (811)
....+..|||.+.+...+.+.|+..... +..|||.|.+||||.++||+|+... +.||+.+||+.+-+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA~S----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVAKS----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHhcC----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 4678899999999999999999865443 4479999999999999999999876 67999999987754
Q ss_pred hhhcC-chhHHHHHHHHHHhcC--------CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHh--hhcCCCC---
Q 047690 398 MFVGV-GPSRVRNLFQEARQCA--------PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVE--MDGFGTT--- 463 (811)
Q Consensus 398 ~~vG~-~~~~vr~lF~~A~~~a--------P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~e--mDg~~~~--- 463 (811)
..... --...+..|.-|.... .+.||+|||-.| .-..+.-+...|++ ++....+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel------------PL~lQaKLLRvLQegEieRvG~~r~i 355 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL------------PLALQAKLLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccC------------CHHHHHHHHHHHhhcceeecCCCcee
Confidence 32110 0112334444443222 369999999766 23344455555554 3333332
Q ss_pred -CcEEEEecCCCCcccchhhcCCCCcc-------eeeeccCCCHHHHHH----HHHHHHhh----ccCC-CCC-chhhhH
Q 047690 464 -AGVVVIAGTNRPDILDKALLRPGRFD-------RQITIDKPDIKGRDQ----IFQVYLKK----IKLD-HEP-SYYSQR 525 (811)
Q Consensus 464 -~~VIVIaaTN~pd~LDpALlRpGRFd-------r~I~v~~Pd~~eR~e----IL~~~l~~----~~l~-~~~-d~~l~~ 525 (811)
-+|-||||||+ +|..++.. |+|- .++.+..|...+|.+ +.+.++++ .+.. ... ...++.
T Consensus 356 kVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~ 432 (550)
T COG3604 356 KVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALEL 432 (550)
T ss_pred EEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHH
Confidence 25899999998 66665554 6663 246677899988866 22333333 2321 111 111344
Q ss_pred HHhhCCCCcHHHHHHHHHHHHHHH
Q 047690 526 LAALTPGFAGADIANVCNEAALIA 549 (811)
Q Consensus 526 LA~~t~GfSgaDL~~LvneAal~A 549 (811)
+....---+.++|+|++++|++.|
T Consensus 433 L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 433 LSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHh
Confidence 444433336799999999999887
No 152
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.8e-10 Score=135.56 Aligned_cols=221 Identities=20% Similarity=0.298 Sum_probs=154.6
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----------CCCeEEe
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSI 390 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----------gvpfi~v 390 (811)
..-.++-|+|-++.++++.+++.. . -..+-+|+|+||+|||.++..+|... +..++++
T Consensus 165 r~gklDPvIGRd~EI~r~iqIL~R---R---------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 165 REGKLDPVIGRDEEIRRTIQILSR---R---------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred hcCCCCCCcChHHHHHHHHHHHhc---c---------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 356799999999877777776652 2 22456899999999999999999854 5567888
Q ss_pred echhhh--hhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEE
Q 047690 391 SGSDFM--EMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVV 468 (811)
Q Consensus 391 s~s~~~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIV 468 (811)
+.+.++ .+|.|+.+++++.+.+...+..+.||||||||.+....... +..-...+.+...| .+..+-+
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~---G~a~DAaNiLKPaL-------ARGeL~~ 302 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATE---GGAMDAANLLKPAL-------ARGELRC 302 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccc---ccccchhhhhHHHH-------hcCCeEE
Confidence 888776 45999999999999999998889999999999997544321 11122334444444 3566889
Q ss_pred EecCCCCc-----ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCC---chhhhHHHhhC-----CCCcH
Q 047690 469 IAGTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEP---SYYSQRLAALT-----PGFAG 535 (811)
Q Consensus 469 IaaTN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~---d~~l~~LA~~t-----~GfSg 535 (811)
|+||...+ .-|+||-| || ..|.+.-|+.++-..||+-.-.++...+.+ |..+...+.++ .-|-+
T Consensus 303 IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LP 379 (786)
T COG0542 303 IGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLP 379 (786)
T ss_pred EEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCC
Confidence 98887543 35999999 99 489999999999999999887766554443 33233333332 33445
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 536 ADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 536 aDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
.-...|+.+|+.............+.++.-+
T Consensus 380 DKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~ 410 (786)
T COG0542 380 DKAIDLLDEAGARVRLEIDKPEELDELEREL 410 (786)
T ss_pred chHHHHHHHHHHHHHhcccCCcchhHHHHHH
Confidence 5566788887665544322344444444443
No 153
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.22 E-value=2e-10 Score=136.13 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=66.4
Q ss_pred cEEEEecCCCC--cccchhhcCCCCcc---eeeecc--CCC-HHHHHHHHHHHHh---hcc-CCCCCchhhhHHH----h
Q 047690 465 GVVVIAGTNRP--DILDKALLRPGRFD---RQITID--KPD-IKGRDQIFQVYLK---KIK-LDHEPSYYSQRLA----A 528 (811)
Q Consensus 465 ~VIVIaaTN~p--d~LDpALlRpGRFd---r~I~v~--~Pd-~~eR~eIL~~~l~---~~~-l~~~~d~~l~~LA----~ 528 (811)
++.||+++|.. ..+||.|+. ||+ ..+.++ .|+ .+.|.++.+...+ +.+ +..-.+..+..+. +
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 68899999964 568999999 998 555553 344 4555555554333 221 2111111122222 1
Q ss_pred hC---C--CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 047690 529 LT---P--GFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 529 ~t---~--GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rv 569 (811)
.. . -.+.++|.++|++|...|..+++..|+.+|+++|++..
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 11 1 23579999999999888877788899999999998754
No 154
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.21 E-value=5e-10 Score=119.04 Aligned_cols=191 Identities=16% Similarity=0.217 Sum_probs=118.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCC-CeEE---ee----chhhhhh---hhcCch------hHHHHH---H-HHHHhcCC
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGV-PFLS---IS----GSDFMEM---FVGVGP------SRVRNL---F-QEARQCAP 419 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gv-pfi~---vs----~s~~~~~---~vG~~~------~~vr~l---F-~~A~~~aP 419 (811)
-++|+||+|+|||++++.+++++.. .+.. ++ ..++... ..|... ..++.+ + .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999999998752 2221 11 1122111 112211 111222 2 22334567
Q ss_pred eEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc---ccc----hhhcCCCCcceee
Q 047690 420 SIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD---ILD----KALLRPGRFDRQI 492 (811)
Q Consensus 420 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd---~LD----pALlRpGRFdr~I 492 (811)
++|+|||+|.+.. .....+..+..... .....+.|+.+ ..++ .+. ..+.+ |+...+
T Consensus 125 ~vliiDe~~~l~~------------~~~~~l~~l~~~~~--~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 125 ALLVVDEAQNLTP------------ELLEELRMLSNFQT--DNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred eEEEEECcccCCH------------HHHHHHHHHhCccc--CCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeeee
Confidence 8999999998721 11222332222111 11222222222 2222 221 12444 777788
Q ss_pred eccCCCHHHHHHHHHHHHhhccCCCC---CchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 047690 493 TIDKPDIKGRDQIFQVYLKKIKLDHE---PSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 493 ~v~~Pd~~eR~eIL~~~l~~~~l~~~---~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rv 569 (811)
++++.+.++..+++...+...+.... .+..++.|.+.+.|.. +.|..+|+.+...|..++...|+.++++.++..+
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 99999999999999999876543211 2334688899999874 5699999999999999999999999999998764
No 155
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.21 E-value=4.8e-10 Score=120.91 Aligned_cols=220 Identities=17% Similarity=0.266 Sum_probs=144.4
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---------CCCeEEeech---
Q 047690 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---------GVPFLSISGS--- 393 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---------gvpfi~vs~s--- 393 (811)
+.-+|+..+++.|..+-+.+..|+.- + +.++||+|+++.|||++++.++... .+|++.+.+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~-----R-mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRH-----R-MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCccc-----C-CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 45689999999999998888888652 2 3469999999999999999998643 3588887652
Q ss_pred ---hhhhh-----hhc----Cc-hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcC
Q 047690 394 ---DFMEM-----FVG----VG-PSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGF 460 (811)
Q Consensus 394 ---~~~~~-----~vG----~~-~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~ 460 (811)
.|... ++- .. .+.-..+....+...+-+|+|||+|.+.. |.....+..+|.|-...+.+
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa--------Gs~~~qr~~Ln~LK~L~NeL 179 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA--------GSYRKQREFLNALKFLGNEL 179 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc--------ccHHHHHHHHHHHHHHhhcc
Confidence 12111 110 11 11223334556677888999999999853 23334444555443332221
Q ss_pred CCCCcEEEEecCCCCc--ccchhhcCCCCcceeeeccCC-CHHHHHHHHHHHHhhccCCCCCch----hhhHHHhhCCCC
Q 047690 461 GTTAGVVVIAGTNRPD--ILDKALLRPGRFDRQITIDKP-DIKGRDQIFQVYLKKIKLDHEPSY----YSQRLAALTPGF 533 (811)
Q Consensus 461 ~~~~~VIVIaaTN~pd--~LDpALlRpGRFdr~I~v~~P-d~~eR~eIL~~~l~~~~l~~~~d~----~l~~LA~~t~Gf 533 (811)
.-.+|.+++..-.. .-|+.+.+ ||+ .+.++.. ..++...+|..+-+.+++...... ....|-..+.|.
T Consensus 180 --~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~ 254 (302)
T PF05621_consen 180 --QIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL 254 (302)
T ss_pred --CCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc
Confidence 22345554432222 23788888 996 4555533 335667778777776666544332 235566678886
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 047690 534 AGADIANVCNEAALIAARGENSQVTMEHFEAA 565 (811)
Q Consensus 534 SgaDL~~LvneAal~Aar~~~~~It~ed~~~A 565 (811)
.| ++.++++.|+..|++.+.+.||.+.++..
T Consensus 255 iG-~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 255 IG-ELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred hH-HHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 66 89999999999999999999999988774
No 156
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.21 E-value=1.5e-10 Score=131.50 Aligned_cols=212 Identities=25% Similarity=0.404 Sum_probs=133.0
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM 398 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~ 398 (811)
...+.+++|.+.+.+++.+.+..+... ...|||+|++||||.++||+|+... +.||+.+||..+-+.
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~s----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAPS----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 356889999999999999999866443 4479999999999999999999866 569999999765432
Q ss_pred -----hhcCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHh--hhcCCC--
Q 047690 399 -----FVGVGP-------SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVE--MDGFGT-- 462 (811)
Q Consensus 399 -----~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~e--mDg~~~-- 462 (811)
..|... .+-...|+.|. .++||||||..+ .-+.+.-|...|++ +.....
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~---GGTLfLDEI~~m------------pl~~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQAN---GGTLFLDEIGEM------------PLELQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcC---CceEEeeccccC------------CHHHHHHHHHHHHcCeeEecCCCc
Confidence 222111 11123455543 379999999887 22334444444443 122222
Q ss_pred --CCcEEEEecCCCCcccchhhcCCCCcc-------eeeeccCCCHHHHHH----HHHHHHhh----ccCCCCCchhhhH
Q 047690 463 --TAGVVVIAGTNRPDILDKALLRPGRFD-------RQITIDKPDIKGRDQ----IFQVYLKK----IKLDHEPSYYSQR 525 (811)
Q Consensus 463 --~~~VIVIaaTN~pd~LDpALlRpGRFd-------r~I~v~~Pd~~eR~e----IL~~~l~~----~~l~~~~d~~l~~ 525 (811)
+-+|-||++||+ +|...+.. |+|- .++.+..|...+|.+ ++++++++ .+.. ...+.-+.
T Consensus 272 ~i~vdvRiIaaT~~--dL~~~v~~-G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~-~~~~s~~a 347 (464)
T COG2204 272 PIKVDVRIIAATNR--DLEEEVAA-GRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRP-PKGFSPEA 347 (464)
T ss_pred ccceeeEEEeecCc--CHHHHHHc-CCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCC-CCCCCHHH
Confidence 236899999997 44444433 5653 257899999999987 33444433 2211 11111233
Q ss_pred HHhhCCCC---cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 047690 526 LAALTPGF---AGADIANVCNEAALIAARGENSQVTMEHFEAA 565 (811)
Q Consensus 526 LA~~t~Gf---SgaDL~~LvneAal~Aar~~~~~It~ed~~~A 565 (811)
++.+...- +.++|.|++.++++.+ ....|+.+|+..-
T Consensus 348 ~~~L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~~~ 387 (464)
T COG2204 348 LAALLAYDWPGNVRELENVVERAVILS---EGPEIEVEDLPLE 387 (464)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhcccc
Confidence 44433222 3467777777766554 5566777666543
No 157
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.21 E-value=2.4e-10 Score=140.46 Aligned_cols=163 Identities=28% Similarity=0.400 Sum_probs=111.6
Q ss_pred ccccccchHhHHHHHHHHHHhc----CchhhhhcCCCCCC-cEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhh
Q 047690 325 FRDVAGCDEAKQEIMEFVHFLK----NPRKYEDLGAKIPK-GALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFM 396 (811)
Q Consensus 325 f~dV~G~eeak~eL~e~v~~Lk----~p~~~~~lg~~~pk-GvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~ 396 (811)
++.|+|++++.+.+.+.+...+ +|.+ |. .+||+||||||||++|++||..+ +.+++.++++++.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~--------p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNR--------PIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCC--------CCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 5679999999999999887532 3321 33 47999999999999999999876 5689999999886
Q ss_pred hh-----hhcCchh----HHHHHHHHH-HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcC--C---
Q 047690 397 EM-----FVGVGPS----RVRNLFQEA-RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGF--G--- 461 (811)
Q Consensus 397 ~~-----~vG~~~~----~vr~lF~~A-~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~--~--- 461 (811)
+. ..|..+. .-...+..+ +....+|||||||+.+ +.. +.+.|+..++.- .
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka------------~~~---v~~~Ll~ile~g~l~d~~ 703 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA------------HPD---VFNILLQVLDDGRLTDGQ 703 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC------------CHH---HHHHHHHHHhhCceecCC
Confidence 43 1221110 001223333 3334489999999876 233 334444444321 1
Q ss_pred ----CCCcEEEEecCCCCc-------------------------ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhh
Q 047690 462 ----TTAGVVVIAGTNRPD-------------------------ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKK 512 (811)
Q Consensus 462 ----~~~~VIVIaaTN~pd-------------------------~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~ 512 (811)
.-.+.++|+|||... .+.|+|+. |+|..+.+.+++.++...|++.++..
T Consensus 704 gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 704 GRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred ceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 113467888998631 23467887 99999999999999999999988865
No 158
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.21 E-value=2.6e-10 Score=139.93 Aligned_cols=160 Identities=26% Similarity=0.368 Sum_probs=113.4
Q ss_pred cccccchHhHHHHHHHHHHh----cCchhhhhcCCCCCCc-EEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh
Q 047690 326 RDVAGCDEAKQEIMEFVHFL----KNPRKYEDLGAKIPKG-ALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME 397 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~L----k~p~~~~~lg~~~pkG-vLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~ 397 (811)
+.|+|++++++.+...+... .+|. -|.+ +||+||+|||||++|+++|..+ ..+++.+++++|.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~--------~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPN--------RPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCC--------CCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 56999999999998887642 2222 2444 7899999999999999999987 46899999988754
Q ss_pred h------------hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC----
Q 047690 398 M------------FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG---- 461 (811)
Q Consensus 398 ~------------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~---- 461 (811)
. |+|..+ ...+....+.+..+||+|||+|.+ +.. +.+.|+..||.-.
T Consensus 581 ~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka------------~~~---v~~~Llq~le~g~~~d~ 643 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA------------HPD---IFNLLLQILDDGRLTDS 643 (821)
T ss_pred cccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC------------CHH---HHHHHHHHhccCceecC
Confidence 2 222222 223445555555689999999987 222 4455555555311
Q ss_pred -----CCCcEEEEecCCCCcc-------------------------------------cchhhcCCCCcceeeeccCCCH
Q 047690 462 -----TTAGVVVIAGTNRPDI-------------------------------------LDKALLRPGRFDRQITIDKPDI 499 (811)
Q Consensus 462 -----~~~~VIVIaaTN~pd~-------------------------------------LDpALlRpGRFdr~I~v~~Pd~ 499 (811)
.-.+.++|+|||.... +.|.++. |+|.+|.|.+.+.
T Consensus 644 ~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~ 721 (821)
T CHL00095 644 KGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTK 721 (821)
T ss_pred CCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCH
Confidence 1246889999885311 2245666 9999999999999
Q ss_pred HHHHHHHHHHHhh
Q 047690 500 KGRDQIFQVYLKK 512 (811)
Q Consensus 500 ~eR~eIL~~~l~~ 512 (811)
++..+|++..+..
T Consensus 722 ~~l~~Iv~~~l~~ 734 (821)
T CHL00095 722 NDVWEIAEIMLKN 734 (821)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888765
No 159
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=3.8e-10 Score=125.57 Aligned_cols=189 Identities=16% Similarity=0.164 Sum_probs=124.2
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCC-------CeEEe---
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGV-------PFLSI--- 390 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gv-------pfi~v--- 390 (811)
.+..|++|+|++++++.|...+. ..+.|..+||+||+|+|||++|+++|+.+.+ |....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~-----------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYR-----------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHH-----------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 45689999999999999999876 3467889999999999999999999998744 21111
Q ss_pred -echhhhhh--------h-h-------------cCchhHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCCCCCCCc
Q 047690 391 -SGSDFMEM--------F-V-------------GVGPSRVRNLFQEAR----QCAPSIIFIDEIDAIGRARGRGGFSGAN 443 (811)
Q Consensus 391 -s~s~~~~~--------~-v-------------G~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~ 443 (811)
.|..+... + + ..+-..+|.+-+... .....||+|||+|.+.
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------ 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------ 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------
Confidence 11111000 0 0 011234454433332 2234699999999982
Q ss_pred hHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhh
Q 047690 444 DERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYS 523 (811)
Q Consensus 444 ~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l 523 (811)
....|.||..++. +..+.++|..|+.++.+.|.+++ |+ ..+.+++|+.++..++|+....... .+ +..+
T Consensus 155 ---~~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~--~~-~~~~ 223 (351)
T PRK09112 155 ---RNAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG--SD-GEIT 223 (351)
T ss_pred ---HHHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC--CC-HHHH
Confidence 2345778888876 33445555556778889999988 88 6999999999999999887432211 11 1223
Q ss_pred hHHHhhCCCCcHHHHHHHHHH
Q 047690 524 QRLAALTPGFAGADIANVCNE 544 (811)
Q Consensus 524 ~~LA~~t~GfSgaDL~~Lvne 544 (811)
..+++.+.| +++...++++.
T Consensus 224 ~~i~~~s~G-~pr~Al~ll~~ 243 (351)
T PRK09112 224 EALLQRSKG-SVRKALLLLNY 243 (351)
T ss_pred HHHHHHcCC-CHHHHHHHHhc
Confidence 556666655 45555555443
No 160
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.20 E-value=1.4e-10 Score=135.87 Aligned_cols=213 Identities=23% Similarity=0.314 Sum_probs=129.2
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME 397 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~ 397 (811)
...+|++++|.+.+.+++.+.+..+.. ....|||+|++|||||++|++|+... +.||+.++|..+.+
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 346899999999999999988876532 34579999999999999999999874 67999999987633
Q ss_pred hh-----hcCchh-------HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh--cCCC-
Q 047690 398 MF-----VGVGPS-------RVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD--GFGT- 462 (811)
Q Consensus 398 ~~-----vG~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD--g~~~- 462 (811)
.. .|.... .....|+.| ...+|||||||.+. ...+..+..++..-. ....
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~------------~~~Q~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS------------PAFQAKLLRVLQEGEFERVGGN 325 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC------------HHHHHHHHHHHhcCcEEECCCC
Confidence 21 111100 001112222 35799999999982 233334444443311 0001
Q ss_pred ---CCcEEEEecCCCCcccchhhcCCCCcce-------eeeccCCCHHHHHH----HHHHHHhhcc----CCCCC-chhh
Q 047690 463 ---TAGVVVIAGTNRPDILDKALLRPGRFDR-------QITIDKPDIKGRDQ----IFQVYLKKIK----LDHEP-SYYS 523 (811)
Q Consensus 463 ---~~~VIVIaaTN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----IL~~~l~~~~----l~~~~-d~~l 523 (811)
..++.+|++|+.. +... ...|+|.. .+.+..|...+|.+ |++.++.... ..... +..+
T Consensus 326 ~~~~~~~riI~~s~~~--l~~~-~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~ 402 (534)
T TIGR01817 326 RTLKVDVRLVAATNRD--LEEA-VAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAI 402 (534)
T ss_pred ceEeecEEEEEeCCCC--HHHH-HHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 1247888888752 2222 22344532 45677777776644 4455554322 11111 1223
Q ss_pred hHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 047690 524 QRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEA 564 (811)
Q Consensus 524 ~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~ 564 (811)
+.|....---+.++|.++++.|+..+ ....|+.+|+..
T Consensus 403 ~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~~ 440 (534)
T TIGR01817 403 RVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFSC 440 (534)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCch
Confidence 45555543346788888888877654 456788888754
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.19 E-value=3.8e-10 Score=138.89 Aligned_cols=166 Identities=25% Similarity=0.348 Sum_probs=111.9
Q ss_pred cccccchHhHHHHHHHHHHhc----CchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh
Q 047690 326 RDVAGCDEAKQEIMEFVHFLK----NPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM 398 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~Lk----~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~ 398 (811)
+.|+|++++.+.+.+.+...+ +|. ++...+||+||||||||++|++||..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~-------~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPN-------RPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEK 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCC-------CCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhccc
Confidence 569999999999999887532 222 223458899999999999999999976 568999999887543
Q ss_pred h-----hcCchh-----HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhh---hcC---CC
Q 047690 399 F-----VGVGPS-----RVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEM---DGF---GT 462 (811)
Q Consensus 399 ~-----vG~~~~-----~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~em---Dg~---~~ 462 (811)
. .|.... .-..+....+....+||||||||.+ +......+.++|.+- |+. ..
T Consensus 638 ~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka------------~~~v~~~Ll~~l~~g~l~d~~g~~vd 705 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA------------HPDVFNVLLQVLDDGRLTDGQGRTVD 705 (852)
T ss_pred chHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC------------CHHHHHHHHHHHhcCceecCCCeEEe
Confidence 1 221111 1122333444555579999999887 233334444444321 110 01
Q ss_pred CCcEEEEecCCCCcc-------------------------cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhh
Q 047690 463 TAGVVVIAGTNRPDI-------------------------LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKK 512 (811)
Q Consensus 463 ~~~VIVIaaTN~pd~-------------------------LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~ 512 (811)
-.+.+||+|||.... +.|.|+. |+|.++.+.+++.++..+|+...+..
T Consensus 706 ~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~ 778 (852)
T TIGR03346 706 FRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGR 778 (852)
T ss_pred cCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHH
Confidence 235788999997221 2356666 99999999999999999999887753
No 162
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1e-10 Score=139.15 Aligned_cols=160 Identities=28% Similarity=0.417 Sum_probs=117.5
Q ss_pred cccccchHhHHHHHHHHHH----hcCchhhhhcCCCCCC-cEEEEcCCCCCHHHHHHHHHHhcC---CCeEEeechhhhh
Q 047690 326 RDVAGCDEAKQEIMEFVHF----LKNPRKYEDLGAKIPK-GALLVGPPGTGKTLLAKATAGESG---VPFLSISGSDFME 397 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~----Lk~p~~~~~lg~~~pk-GvLL~GPPGTGKT~LAkAlA~e~g---vpfi~vs~s~~~~ 397 (811)
+.|+|+++|...+...+.. |++|.+ |. .+||.||+|+|||-|||+||..+. ..++.+++|+|++
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~r--------PigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNR--------PIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCC--------CceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 4699999999999988875 555544 44 467899999999999999999985 8999999999987
Q ss_pred h------------hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCC---
Q 047690 398 M------------FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGT--- 462 (811)
Q Consensus 398 ~------------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~--- 462 (811)
. |+|..+.. .+-+..+++..|||++|||+.- ++ .++|-||+.||.-.-
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG--~LTEaVRr~PySViLlDEIEKA------------Hp---dV~nilLQVlDdGrLTD~ 625 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGG--QLTEAVRRKPYSVILLDEIEKA------------HP---DVFNLLLQVLDDGRLTDG 625 (786)
T ss_pred HHHHHHHhCCCCCCceecccc--chhHhhhcCCCeEEEechhhhc------------CH---HHHHHHHHHhcCCeeecC
Confidence 6 55554421 2333445556799999999775 22 466777777764211
Q ss_pred ------CCcEEEEecCCCCc----------------------------ccchhhcCCCCcceeeeccCCCHHHHHHHHHH
Q 047690 463 ------TAGVVVIAGTNRPD----------------------------ILDKALLRPGRFDRQITIDKPDIKGRDQIFQV 508 (811)
Q Consensus 463 ------~~~VIVIaaTN~pd----------------------------~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~ 508 (811)
=.+.|+|+|||--. ...|+++. |+|.+|.|...+.+...+|+..
T Consensus 626 ~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~ 703 (786)
T COG0542 626 QGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDL 703 (786)
T ss_pred CCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHH
Confidence 12578999998421 12456666 8888888888888888888887
Q ss_pred HHhh
Q 047690 509 YLKK 512 (811)
Q Consensus 509 ~l~~ 512 (811)
.+..
T Consensus 704 ~L~~ 707 (786)
T COG0542 704 QLNR 707 (786)
T ss_pred HHHH
Confidence 7754
No 163
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.18 E-value=5.2e-10 Score=123.49 Aligned_cols=155 Identities=31% Similarity=0.351 Sum_probs=97.8
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCchhH
Q 047690 327 DVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSR 406 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~~~ 406 (811)
.++|.++++..+...+. ....+||.||||||||+||+++|..++.+|+.+.|......-...+...
T Consensus 25 ~~~g~~~~~~~~l~a~~--------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALL--------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHH--------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 36666665555443332 2356899999999999999999999999999999986553321111111
Q ss_pred HHHH------HHHHH--hcCC--eEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh------c-CCCCCcEEEE
Q 047690 407 VRNL------FQEAR--QCAP--SIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD------G-FGTTAGVVVI 469 (811)
Q Consensus 407 vr~l------F~~A~--~~aP--~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD------g-~~~~~~VIVI 469 (811)
.... |.... -... +|+|+|||+.. ....+..+.+.+.+.. . +.-...++||
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~vi 158 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVI 158 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccC------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEE
Confidence 1111 00000 0001 49999999775 2333444444444411 1 3344678999
Q ss_pred ecCC-----CCcccchhhcCCCCcceeeeccCCCHH-HHHHHHHHH
Q 047690 470 AGTN-----RPDILDKALLRPGRFDRQITIDKPDIK-GRDQIFQVY 509 (811)
Q Consensus 470 aaTN-----~pd~LDpALlRpGRFdr~I~v~~Pd~~-eR~eIL~~~ 509 (811)
+|.| ....|++|+++ ||...+.++.|+.+ +...++...
T Consensus 159 aT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 159 ATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred EccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhC
Confidence 9999 44568999999 99889999999544 444444443
No 164
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.18 E-value=2.7e-10 Score=125.87 Aligned_cols=203 Identities=19% Similarity=0.222 Sum_probs=118.5
Q ss_pred cccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh-----h
Q 047690 328 VAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM-----F 399 (811)
Q Consensus 328 V~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~-----~ 399 (811)
++|.+.+.+.+.+.+..+. .....|||+|++||||+++|++|+... +.||+.++|+.+.+. .
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 5788888888888877543 234579999999999999999998755 579999999865321 1
Q ss_pred hcCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh--cC----CCCCcE
Q 047690 400 VGVGP-------SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD--GF----GTTAGV 466 (811)
Q Consensus 400 vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD--g~----~~~~~V 466 (811)
.|... .....+|+.| ..++|||||||.|- ...+..|..+|..-. .. ....++
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATAS------------LLVQEKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCC------------HHHHHHHHHHHHcCcEEecCCCceeccce
Confidence 12110 0111224433 35799999999982 333444444443311 00 012457
Q ss_pred EEEecCCCCc-------ccchhhcCCCCcceeeeccCCCHHHHHHH----HHHHHhh----ccCCC--CC-chhhhHHHh
Q 047690 467 VVIAGTNRPD-------ILDKALLRPGRFDRQITIDKPDIKGRDQI----FQVYLKK----IKLDH--EP-SYYSQRLAA 528 (811)
Q Consensus 467 IVIaaTN~pd-------~LDpALlRpGRFdr~I~v~~Pd~~eR~eI----L~~~l~~----~~l~~--~~-d~~l~~LA~ 528 (811)
.+|++||..- .+.+.|.. ||. .+.|..|...+|.+- ++.++.. .+... .. +..++.|..
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~ 212 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLE 212 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHh
Confidence 8899888521 22334443 442 467888888888663 3333332 22221 11 122344444
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 047690 529 LTPGFAGADIANVCNEAALIAARGENSQVTMEH 561 (811)
Q Consensus 529 ~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed 561 (811)
..---+.++|.++++.|+..+ ....++.+|
T Consensus 213 y~WPGNvrEL~n~i~~~~~~~---~~~~~~~~~ 242 (329)
T TIGR02974 213 YHWPGNVRELKNVVERSVYRH---GLEEAPIDE 242 (329)
T ss_pred CCCCchHHHHHHHHHHHHHhC---CCCccchhh
Confidence 443335678888888776554 233455544
No 165
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.17 E-value=3.4e-10 Score=131.11 Aligned_cols=215 Identities=22% Similarity=0.273 Sum_probs=129.0
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc------------------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES------------------ 383 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~------------------ 383 (811)
...|+||.|++.+++.+.-.+. ....++|.||||||||++|+++++.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa~--------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAAA--------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhcc--------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 3489999999998776554332 23569999999999999999998632
Q ss_pred ----------CCCeEEeechhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHH
Q 047690 384 ----------GVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQL 453 (811)
Q Consensus 384 ----------gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqL 453 (811)
..||...+++......+|.+..--...+..| ..++|||||++.+. ......|.+.
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~------------~~~~~~L~~~ 318 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFK------------RSVLDALREP 318 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCC------------HHHHHHHHHH
Confidence 1244433333222222232211111223333 34799999999872 2333444444
Q ss_pred HHhhh----c----CCCCCcEEEEecCCCC------c-----------------ccchhhcCCCCcceeeeccCCCHHH-
Q 047690 454 LVEMD----G----FGTTAGVVVIAGTNRP------D-----------------ILDKALLRPGRFDRQITIDKPDIKG- 501 (811)
Q Consensus 454 L~emD----g----~~~~~~VIVIaaTN~p------d-----------------~LDpALlRpGRFdr~I~v~~Pd~~e- 501 (811)
|+.-. . ..-..++.+|+++|.- + .+...|+. |||.++.++.++..+
T Consensus 319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKL 396 (499)
T ss_pred HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHH
Confidence 43210 0 0112468999999852 1 47788888 999999998765432
Q ss_pred ------------HHHHHHHHHhh---c-c-----CCCC-----------CchhhhHH---HhhCCCCcHHHHHHHHHHHH
Q 047690 502 ------------RDQIFQVYLKK---I-K-----LDHE-----------PSYYSQRL---AALTPGFAGADIANVCNEAA 546 (811)
Q Consensus 502 ------------R~eIL~~~l~~---~-~-----l~~~-----------~d~~l~~L---A~~t~GfSgaDL~~LvneAa 546 (811)
|..+.+..-.+ . + .... .+.....+ +....++|.+....+++-|.
T Consensus 397 ~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvAr 476 (499)
T TIGR00368 397 LSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVAR 476 (499)
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 22232221111 0 1 1000 01001111 22234689999999999999
Q ss_pred HHHHHcCCCccCHHHHHHHHH
Q 047690 547 LIAARGENSQVTMEHFEAAID 567 (811)
Q Consensus 547 l~Aar~~~~~It~ed~~~Al~ 567 (811)
.+|..++.+.|+.+|+.+|+.
T Consensus 477 TiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 477 TIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHhhcCCCCCCHHHHHHHHh
Confidence 999999999999999999984
No 166
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.17 E-value=3.5e-10 Score=135.32 Aligned_cols=214 Identities=21% Similarity=0.305 Sum_probs=130.7
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh-
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME- 397 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~- 397 (811)
..+|++++|.+.+.+++.+.+..+.. .+..|||+|++||||+++|++|+... +.||+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 45799999999999998888775432 24469999999999999999999865 57999999987632
Q ss_pred ----hhhcCc----hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh--cCCC----C
Q 047690 398 ----MFVGVG----PSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD--GFGT----T 463 (811)
Q Consensus 398 ----~~vG~~----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD--g~~~----~ 463 (811)
...|.. .......|+.| ..++||||||+.+- ...+..|..+|.+-. .... .
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~------------~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS------------PELQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC------------HHHHHHHHHHHhcCcEEeCCCCceEE
Confidence 222211 00011123322 35799999999982 333444444443211 0011 1
Q ss_pred CcEEEEecCCCCcccchhhcCCCCcce-------eeeccCCCHHHHHH----HHHHHHhhc----cCCCCC-chhhhHHH
Q 047690 464 AGVVVIAGTNRPDILDKALLRPGRFDR-------QITIDKPDIKGRDQ----IFQVYLKKI----KLDHEP-SYYSQRLA 527 (811)
Q Consensus 464 ~~VIVIaaTN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----IL~~~l~~~----~l~~~~-d~~l~~LA 527 (811)
-++.+|++|+.. +. .+...|+|.. .+.|..|...+|.+ +++.++... +..... +..++.|.
T Consensus 456 ~~~riI~~t~~~--l~-~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~ 532 (638)
T PRK11388 456 VDVRVIATTTAD--LA-MLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 (638)
T ss_pred eeEEEEEeccCC--HH-HHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHH
Confidence 257789988863 22 2223344432 57788898888864 344444432 111111 22235555
Q ss_pred hhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 528 ALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 528 ~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
...---+.++|.++++.|...+ ....|+.+|+...+
T Consensus 533 ~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 533 SYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred cCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 5553346688888888876543 45578888876554
No 167
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=9.9e-10 Score=122.92 Aligned_cols=185 Identities=17% Similarity=0.166 Sum_probs=123.6
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCe-------------
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF------------- 387 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpf------------- 387 (811)
.+-+|++|+|++++++.|.+.+. ..++|..+||+||+|+||+++|.++|+.+-+.-
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~-----------~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYR-----------SGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 45689999999999999998876 346788999999999999999999999662210
Q ss_pred E--Eeechhh-----------hhhhh---c--------CchhHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCCCC
Q 047690 388 L--SISGSDF-----------MEMFV---G--------VGPSRVRNLFQEAR----QCAPSIIFIDEIDAIGRARGRGGF 439 (811)
Q Consensus 388 i--~vs~s~~-----------~~~~v---G--------~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~ 439 (811)
+ .-.|... ..... . ..-..+|++-..+. ...|-||+|||+|.+.
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 0 0011111 00000 1 11244666555443 2346799999999982
Q ss_pred CCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCC
Q 047690 440 SGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEP 519 (811)
Q Consensus 440 ~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~ 519 (811)
....|.||..++. +..+.++|.+|+.++.+.+.+++ |+ ..+.++.|+.++-.++|...... . .
T Consensus 155 -------~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~----~-~ 217 (365)
T PRK07471 155 -------ANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD----L-P 217 (365)
T ss_pred -------HHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc----C-C
Confidence 2456777777775 44566777788989999999888 77 68999999999998888775421 1 1
Q ss_pred chhhhHHHhhCCCCcHHHHHHHH
Q 047690 520 SYYSQRLAALTPGFAGADIANVC 542 (811)
Q Consensus 520 d~~l~~LA~~t~GfSgaDL~~Lv 542 (811)
+..+..++..+.| ++....+++
T Consensus 218 ~~~~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 218 DDPRAALAALAEG-SVGRALRLA 239 (365)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHh
Confidence 1112456666665 444443433
No 168
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.16 E-value=3.8e-10 Score=131.90 Aligned_cols=211 Identities=19% Similarity=0.293 Sum_probs=125.4
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME 397 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~ 397 (811)
...+|++++|.+.+.+.+.+.+..+.. ....|||+|++||||+++|++++... +.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 457999999999998888887764322 24569999999999999999997654 57999999987643
Q ss_pred h-----hhcCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhh--hcCC--
Q 047690 398 M-----FVGVGP-------SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEM--DGFG-- 461 (811)
Q Consensus 398 ~-----~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~em--Dg~~-- 461 (811)
. ..|... .....+|+.| ..++|||||||.+. ...+..+..++..- ....
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMS------------PRMQAKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCC------------HHHHHHHHHHHhcCCcccCCCC
Confidence 2 122211 1112345444 24799999999982 23344444455431 1111
Q ss_pred --CCCcEEEEecCCCCc-c------cchhhcCCCCcceeeeccCCCHHHHHH----HHHHHHh----hccCCC-CC-chh
Q 047690 462 --TTAGVVVIAGTNRPD-I------LDKALLRPGRFDRQITIDKPDIKGRDQ----IFQVYLK----KIKLDH-EP-SYY 522 (811)
Q Consensus 462 --~~~~VIVIaaTN~pd-~------LDpALlRpGRFdr~I~v~~Pd~~eR~e----IL~~~l~----~~~l~~-~~-d~~ 522 (811)
...++.||++|+.+- . +.+.|.. |+. .+.+..|...+|.+ +++.++. +.+... .. +..
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a 410 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADL 410 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 123577888887531 1 2233333 443 47788888888874 2233333 222211 11 111
Q ss_pred hhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 047690 523 SQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHF 562 (811)
Q Consensus 523 l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~ 562 (811)
++.|....---.-++|.+++.+|+..+ ....|+.+|+
T Consensus 411 ~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 411 NTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 233433332235577777777776544 4556777775
No 169
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.16 E-value=1.7e-10 Score=129.07 Aligned_cols=201 Identities=24% Similarity=0.352 Sum_probs=125.7
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHh----cCCCeEEeechhhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGE----SGVPFLSISGSDFM 396 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e----~gvpfi~vs~s~~~ 396 (811)
....+++++|.+...+++.+.+..+ ......||++|++||||+++|+.|+.. .+.||+.+||+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 4567999999999999999988752 122356999999999999999999754 36799999999875
Q ss_pred hhhh-----cC-------chhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh--cCC-
Q 047690 397 EMFV-----GV-------GPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD--GFG- 461 (811)
Q Consensus 397 ~~~v-----G~-------~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD--g~~- 461 (811)
+... |. ....-..+|+.|-. .+||+|||+.+- .+.+..+-.+|.+-. ...
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP------------~~~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLP------------PEGQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCC------------HhHHHHHHHHHHcCceEecCC
Confidence 4321 11 12233345555533 699999999982 233444444444411 111
Q ss_pred ---CCCcEEEEecCCCCcccchhhcC-CCCcc--eeeeccCCCHHHHHH----H----HHHHHhhccCCCCCch--hhhH
Q 047690 462 ---TTAGVVVIAGTNRPDILDKALLR-PGRFD--RQITIDKPDIKGRDQ----I----FQVYLKKIKLDHEPSY--YSQR 525 (811)
Q Consensus 462 ---~~~~VIVIaaTN~pd~LDpALlR-pGRFd--r~I~v~~Pd~~eR~e----I----L~~~l~~~~l~~~~d~--~l~~ 525 (811)
...+|.+|+|||- .++.+++. ..-+. ..+.|.+|+..+|.+ + ++.++++.+.+..... .+..
T Consensus 208 ~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 208 SQPRPVDVRLICATTE--DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCCcCCCceeeecccc--CHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 2346889999884 44444443 11222 245677888888855 2 3333445554443332 2233
Q ss_pred HHhh-CCCCcHHHHHHHHHHHHHHH
Q 047690 526 LAAL-TPGFAGADIANVCNEAALIA 549 (811)
Q Consensus 526 LA~~-t~GfSgaDL~~LvneAal~A 549 (811)
+-.. .+| +-++|.|++..++..+
T Consensus 286 L~~y~~pG-NirELkN~Ve~~~~~~ 309 (403)
T COG1221 286 LLAYDWPG-NIRELKNLVERAVAQA 309 (403)
T ss_pred HHhCCCCC-cHHHHHHHHHHHHHHh
Confidence 3333 343 5678999999887665
No 170
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=4e-10 Score=123.49 Aligned_cols=153 Identities=18% Similarity=0.301 Sum_probs=110.2
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC--------eEEeechh
Q 047690 323 VYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP--------FLSISGSD 394 (811)
Q Consensus 323 v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp--------fi~vs~s~ 394 (811)
++|++|+|++.+++.+...+. ..++|+.+||+||+|+|||++|+++|+.+-+. ++.+...+
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred CChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 479999999999999988875 34678889999999999999999999976332 22222110
Q ss_pred hhhhhhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEe
Q 047690 395 FMEMFVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIA 470 (811)
Q Consensus 395 ~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIa 470 (811)
. ...+-..+|++.+.+... ...|++||++|.+. ....|.||..++. +..++++|.
T Consensus 70 --~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~---------------~~a~naLLK~LEe--pp~~t~~il 128 (313)
T PRK05564 70 --K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT---------------EQAQNAFLKTIEE--PPKGVFIIL 128 (313)
T ss_pred --C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC---------------HHHHHHHHHHhcC--CCCCeEEEE
Confidence 0 011234577766654321 23599999999882 2346778887876 455666666
Q ss_pred cCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHH
Q 047690 471 GTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYL 510 (811)
Q Consensus 471 aTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l 510 (811)
+|+.++.|-|.+++ |+ ..+++..|+.++....+...+
T Consensus 129 ~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 129 LCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred EeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 66788999999998 77 589999999988877776554
No 171
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.14 E-value=7.4e-10 Score=126.46 Aligned_cols=214 Identities=15% Similarity=0.098 Sum_probs=125.7
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCC--CeEEeechh-hhhhhhcCc
Q 047690 327 DVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGV--PFLSISGSD-FMEMFVGVG 403 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gv--pfi~vs~s~-~~~~~vG~~ 403 (811)
.|+|.+++++.+...+. ...++||+||||||||++|+++|..++. +|..+.+.- ..+...|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 56778877776665542 2357999999999999999999997642 666554431 112222211
Q ss_pred -hhHH--HHHHHHHHhc---CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC--------CCCcEEEE
Q 047690 404 -PSRV--RNLFQEARQC---APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG--------TTAGVVVI 469 (811)
Q Consensus 404 -~~~v--r~lF~~A~~~---aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~--------~~~~VIVI 469 (811)
-... ..-|...... ...+||+|||..+. ..+.+.||..|+.-. .-...+++
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras---------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv 151 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG---------------PAILNTLLTAINERRFRNGAHEEKIPMRLLV 151 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCC---------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEE
Confidence 0000 1122211111 22499999997552 245566666663211 11123445
Q ss_pred ecCCCCc---ccchhhcCCCCcceeeeccCCC-HHHHHHHHHHHHhh--ccC-----------------------CCCCc
Q 047690 470 AGTNRPD---ILDKALLRPGRFDRQITIDKPD-IKGRDQIFQVYLKK--IKL-----------------------DHEPS 520 (811)
Q Consensus 470 aaTN~pd---~LDpALlRpGRFdr~I~v~~Pd-~~eR~eIL~~~l~~--~~l-----------------------~~~~d 520 (811)
+|||... ...+++.. ||-..+.+++|+ .++..+||...... ... +..+-
T Consensus 152 ~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~ 229 (498)
T PRK13531 152 TASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVF 229 (498)
T ss_pred EECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHH
Confidence 5557422 23358888 997789999996 45557777653221 101 00011
Q ss_pred hhhhHHHhh---C---CCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcC
Q 047690 521 YYSQRLAAL---T---PGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGG 572 (811)
Q Consensus 521 ~~l~~LA~~---t---~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rvi~g 572 (811)
.++..+... + ...|++--..+++-|...|...++..|+.+|+. .+..++..
T Consensus 230 eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 230 ELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred HHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 112233321 2 237888888888888889999999999999999 66666554
No 172
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.14 E-value=5.9e-10 Score=123.01 Aligned_cols=197 Identities=20% Similarity=0.254 Sum_probs=118.0
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh--
Q 047690 324 YFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM-- 398 (811)
Q Consensus 324 ~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~-- 398 (811)
-|++++|.+.+.+.+.+.+..+. +.+..|||+|++||||+++|++|+... +.||+.++|..+-+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 47789999999999999887643 234579999999999999999998765 579999999876321
Q ss_pred ---hhcCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCC------
Q 047690 399 ---FVGVGP-------SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGT------ 462 (811)
Q Consensus 399 ---~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~------ 462 (811)
+.|... ......|..| ...+|||||||.+. ...+..+..++..-. +..
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~------------~~~Q~~L~~~l~~~~-~~~~g~~~~ 137 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP------------MLVQEKLLRVIEYGE-LERVGGSQP 137 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCC------------HHHHHHHHHHHhcCc-EEeCCCCce
Confidence 112110 0111233333 34799999999982 233334444443311 111
Q ss_pred -CCcEEEEecCCCC-------cccchhhcCCCCcceeeeccCCCHHHHHH----HHHHHHhhc----cCC--CCC-chhh
Q 047690 463 -TAGVVVIAGTNRP-------DILDKALLRPGRFDRQITIDKPDIKGRDQ----IFQVYLKKI----KLD--HEP-SYYS 523 (811)
Q Consensus 463 -~~~VIVIaaTN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR~e----IL~~~l~~~----~l~--~~~-d~~l 523 (811)
..++.||++|+.. ..+.+.|.. ||. .+.|..|+..+|.+ +++.++... +.. ... ...+
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al 214 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERAR 214 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 1257888888752 123344444 453 46777888888866 344444322 211 111 1123
Q ss_pred hHHHhhCCCCcHHHHHHHHHHHHHHH
Q 047690 524 QRLAALTPGFAGADIANVCNEAALIA 549 (811)
Q Consensus 524 ~~LA~~t~GfSgaDL~~LvneAal~A 549 (811)
+.+....---+-++|+++++.|+..+
T Consensus 215 ~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 215 ETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 44444443335678888888776543
No 173
>PHA02244 ATPase-like protein
Probab=99.13 E-value=1.6e-09 Score=120.08 Aligned_cols=123 Identities=28% Similarity=0.366 Sum_probs=82.4
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhh--hcC--chhHHH-HHHHHHHhcCCeEEEEcCcchhhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF--VGV--GPSRVR-NLFQEARQCAPSIIFIDEIDAIGRA 433 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~--vG~--~~~~vr-~lF~~A~~~aP~ILfIDEIDaL~~~ 433 (811)
...+||+||||||||++|+++|..++.||+.+++. .+.+ .|. ....+. .-|-.|.+ ..++|+||||+.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~-- 193 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDASI-- 193 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcCC--
Confidence 45799999999999999999999999999999853 1111 111 001111 12333332 46799999998872
Q ss_pred cCCCCCCCCchHHHHHHHHHHHh-----hhc-CCCCCcEEEEecCCCC-----------cccchhhcCCCCcceeeeccC
Q 047690 434 RGRGGFSGANDERESTLNQLLVE-----MDG-FGTTAGVVVIAGTNRP-----------DILDKALLRPGRFDRQITIDK 496 (811)
Q Consensus 434 r~~~~~~~~~~e~~~tLnqLL~e-----mDg-~~~~~~VIVIaaTN~p-----------d~LDpALlRpGRFdr~I~v~~ 496 (811)
......|+.++.. .++ .....++.+|+|+|.+ ..|+++++. || ..|+++.
T Consensus 194 ----------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dy 260 (383)
T PHA02244 194 ----------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDY 260 (383)
T ss_pred ----------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCC
Confidence 2334455555532 111 1234578999999973 468999999 99 4799999
Q ss_pred CCH
Q 047690 497 PDI 499 (811)
Q Consensus 497 Pd~ 499 (811)
|+.
T Consensus 261 p~~ 263 (383)
T PHA02244 261 DEK 263 (383)
T ss_pred CcH
Confidence 984
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.13 E-value=2.7e-10 Score=105.62 Aligned_cols=126 Identities=37% Similarity=0.497 Sum_probs=82.7
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCC---eEEeechhhhhh--------------hhcCchhHHHHHHHHHHhcCCeE
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVP---FLSISGSDFMEM--------------FVGVGPSRVRNLFQEARQCAPSI 421 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvp---fi~vs~s~~~~~--------------~vG~~~~~vr~lF~~A~~~aP~I 421 (811)
+..++|+||||||||++++++|..+..+ ++.++++..... .........+.++..++...|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3568999999999999999999998775 888887754322 12234556778888888888899
Q ss_pred EEEcCcchhhhhcCCCCCCCCchHHHHHHHHH--HHhhhcCCCCCcEEEEecCCC-CcccchhhcCCCCcceeeeccCC
Q 047690 422 IFIDEIDAIGRARGRGGFSGANDERESTLNQL--LVEMDGFGTTAGVVVIAGTNR-PDILDKALLRPGRFDRQITIDKP 497 (811)
Q Consensus 422 LfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqL--L~emDg~~~~~~VIVIaaTN~-pd~LDpALlRpGRFdr~I~v~~P 497 (811)
|+|||++.+..... ....... ..............+|+++|. ....+..+.+ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQ-----------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHH-----------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 99999999843221 0111000 000111123456788888886 3334444444 88888887654
No 175
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.13 E-value=9.6e-10 Score=120.87 Aligned_cols=66 Identities=41% Similarity=0.629 Sum_probs=51.7
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcC--CCeEEeechhhh
Q 047690 324 YFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESG--VPFLSISGSDFM 396 (811)
Q Consensus 324 ~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~g--vpfi~vs~s~~~ 396 (811)
..+-++|+.+|.+.+--+++.++..+. ..+++||.||||||||.||-++|+++| +||+.++++++.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~-------aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKI-------AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccccChHHHHHHHHHHHHHHhcccc-------cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 456899999999999999888776543 357899999999999999999999996 899999988653
No 176
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.12 E-value=7.1e-10 Score=129.38 Aligned_cols=199 Identities=24% Similarity=0.312 Sum_probs=122.1
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh--
Q 047690 324 YFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM-- 398 (811)
Q Consensus 324 ~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~-- 398 (811)
++.+++|.+.+.+.+.+.+..+. ..+..|||+|++||||+++|++|+... +.||+.++|..+.+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 68899999999999999887643 235689999999999999999999864 579999999876432
Q ss_pred ---hhcCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh--cCC----C
Q 047690 399 ---FVGVGP-------SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD--GFG----T 462 (811)
Q Consensus 399 ---~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD--g~~----~ 462 (811)
..|... ......|+.| ..++|||||||.|. ...+..+..++..-. ... .
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELP------------LALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCC------------HHHHHHHHHHHhcCCEeeCCCCcce
Confidence 122110 0011234433 34799999999983 233334444443311 111 1
Q ss_pred CCcEEEEecCCCCcccchhhcCCCCcce-------eeeccCCCHHHHHH----HHHHHHhhc----cCC-CCC-chhhhH
Q 047690 463 TAGVVVIAGTNRPDILDKALLRPGRFDR-------QITIDKPDIKGRDQ----IFQVYLKKI----KLD-HEP-SYYSQR 525 (811)
Q Consensus 463 ~~~VIVIaaTN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----IL~~~l~~~----~l~-~~~-d~~l~~ 525 (811)
..++-+|++||.. +... ...|+|.. .+.|..|+..+|.+ ++++++++. +.. ... ...++.
T Consensus 320 ~~~~RiI~~t~~~--l~~~-~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~ 396 (509)
T PRK05022 320 RVDVRVIAATNRD--LREE-VRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAA 396 (509)
T ss_pred ecceEEEEecCCC--HHHH-HHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 2367889998863 2222 22234432 46788899888866 333344332 111 111 112344
Q ss_pred HHhhCCCCcHHHHHHHHHHHHHHHH
Q 047690 526 LAALTPGFAGADIANVCNEAALIAA 550 (811)
Q Consensus 526 LA~~t~GfSgaDL~~LvneAal~Aa 550 (811)
|....---+-++|++++++|+..+.
T Consensus 397 L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 397 LLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 5544444467899999998877663
No 177
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.12 E-value=9.8e-10 Score=128.17 Aligned_cols=221 Identities=17% Similarity=0.182 Sum_probs=131.4
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhh--hcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC-eEEe---echhhhhhhh
Q 047690 327 DVAGCDEAKQEIMEFVHFLKNPRKYE--DLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP-FLSI---SGSDFMEMFV 400 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~Lk~p~~~~--~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp-fi~v---s~s~~~~~~v 400 (811)
+|.|++.+|..+.-.+ +....... ....+-..+|||+|+||||||++||++++.+... |... ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l--~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLL--FGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHH--hCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 6889998877765433 22111100 1112233479999999999999999999977533 3221 2222211000
Q ss_pred c---CchhHHH-HHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC-----------CCCc
Q 047690 401 G---VGPSRVR-NLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG-----------TTAG 465 (811)
Q Consensus 401 G---~~~~~vr-~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~-----------~~~~ 465 (811)
. .++-.++ ..+.. ....+++|||+|.+- +..+ ..|+..|+.-. -+.+
T Consensus 282 ~~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l~------------~~~q---~~L~e~me~~~i~i~k~G~~~~l~~~ 343 (509)
T smart00350 282 RDPETREFTLEGGALVL---ADNGVCCIDEFDKMD------------DSDR---TAIHEAMEQQTISIAKAGITTTLNAR 343 (509)
T ss_pred EccCcceEEecCccEEe---cCCCEEEEechhhCC------------HHHH---HHHHHHHhcCEEEEEeCCEEEEecCC
Confidence 0 0000000 01111 234699999999982 2223 33344443211 1246
Q ss_pred EEEEecCCCCc-------------ccchhhcCCCCcceeee-ccCCCHHHHHHHHHHHHhhcc---------C-------
Q 047690 466 VVVIAGTNRPD-------------ILDKALLRPGRFDRQIT-IDKPDIKGRDQIFQVYLKKIK---------L------- 515 (811)
Q Consensus 466 VIVIaaTN~pd-------------~LDpALlRpGRFdr~I~-v~~Pd~~eR~eIL~~~l~~~~---------l------- 515 (811)
+.||||+|..+ .|++++++ |||..+. .+.|+.+...+|+++.+.... .
T Consensus 344 ~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
T smart00350 344 CSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQE 421 (509)
T ss_pred cEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHH
Confidence 88999999652 58999999 9998654 478999998898887553211 0
Q ss_pred -------------CCCC-chhhhHHH-----hh----------CCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 516 -------------DHEP-SYYSQRLA-----AL----------TPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 516 -------------~~~~-d~~l~~LA-----~~----------t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
.+.. +...+.+. .+ ..+.|.+.+..+++-|...|+.+.+..|+.+|+..|+
T Consensus 422 ~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai 501 (509)
T smart00350 422 FLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAI 501 (509)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 0000 00001110 01 1256889999999999889999999999999999998
Q ss_pred HHH
Q 047690 567 DRV 569 (811)
Q Consensus 567 ~rv 569 (811)
+-+
T Consensus 502 ~l~ 504 (509)
T smart00350 502 RLL 504 (509)
T ss_pred HHH
Confidence 754
No 178
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.11 E-value=1.8e-09 Score=114.31 Aligned_cols=130 Identities=21% Similarity=0.283 Sum_probs=88.0
Q ss_pred CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCC-------------CcccchhhcCC
Q 047690 419 PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNR-------------PDILDKALLRP 485 (811)
Q Consensus 419 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~-------------pd~LDpALlRp 485 (811)
|.+|||||+|.| +-+ .+..|-..++. +-.-+||.+||+ |.-+++.|+.
T Consensus 297 PGVLFIDEVhML------------DiE---cFTyL~kalES---~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 297 PGVLFIDEVHML------------DIE---CFTYLHKALES---PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred CcceEeeehhhh------------hhH---HHHHHHHHhcC---CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 778888888777 112 22233333332 222356666675 3345666666
Q ss_pred CCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 047690 486 GRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAA 565 (811)
Q Consensus 486 GRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~A 565 (811)
|+ ..|..-+.+.++.++|++...+..++..+.+. +..++.....-|-+-..+|+.-|.+.|...++..|..+|++++
T Consensus 358 -Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a-~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~ 434 (456)
T KOG1942|consen 358 -RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEA-LDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEV 434 (456)
T ss_pred -he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHH-HHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHH
Confidence 55 35666678889999999999988777766543 4667766655666667777777888888889999999999998
Q ss_pred HHHHh
Q 047690 566 IDRVI 570 (811)
Q Consensus 566 l~rvi 570 (811)
-+-.+
T Consensus 435 ~~Lf~ 439 (456)
T KOG1942|consen 435 TELFL 439 (456)
T ss_pred HHHHH
Confidence 76544
No 179
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.10 E-value=4.5e-09 Score=109.05 Aligned_cols=194 Identities=23% Similarity=0.328 Sum_probs=134.1
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFM 396 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~ 396 (811)
...+.+.+|+|.+.+++.|.+....+.. ..+..+|||+|..|||||+|+||+.++. +..++.|+-.++.
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 3468999999999999999887664321 2345789999999999999999998876 6678999888874
Q ss_pred hhhhcCchhHHHHHHHHHHhc-CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcC--CCCCcEEEEecCC
Q 047690 397 EMFVGVGPSRVRNLFQEARQC-APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGF--GTTAGVVVIAGTN 473 (811)
Q Consensus 397 ~~~vG~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~--~~~~~VIVIaaTN 473 (811)
.+-.++++.+.. ..-|||+|++- +..+ +.. ...|-..|||- ....+|+|.||+|
T Consensus 126 ---------~Lp~l~~~Lr~~~~kFIlFcDDLS----------Fe~g-d~~---yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 126 ---------TLPDLVELLRARPEKFILFCDDLS----------FEEG-DDA---YKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ---------hHHHHHHHHhcCCceEEEEecCCC----------CCCC-chH---HHHHHHHhcCCcccCCCeEEEEEecC
Confidence 345566666543 35699999971 2122 222 23333445553 2456899999999
Q ss_pred CCcccc--------------------hhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCch-h--hhHHHhhC
Q 047690 474 RPDILD--------------------KALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSY-Y--SQRLAALT 530 (811)
Q Consensus 474 ~pd~LD--------------------pALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~-~--l~~LA~~t 530 (811)
+-..|+ ..+--+.||...+.|.+++.++-..|+..++++.+++.+.+. . .-..|..-
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~r 262 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTR 262 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 854432 112223499999999999999999999999999888775321 1 12233444
Q ss_pred CCCcHHHHHHHHHH
Q 047690 531 PGFAGADIANVCNE 544 (811)
Q Consensus 531 ~GfSgaDL~~Lvne 544 (811)
.|-||+-..+.++.
T Consensus 263 g~RSGR~A~QF~~~ 276 (287)
T COG2607 263 GGRSGRVAWQFIRD 276 (287)
T ss_pred CCCccHhHHHHHHH
Confidence 55566655555443
No 180
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.10 E-value=9.1e-10 Score=130.34 Aligned_cols=192 Identities=21% Similarity=0.215 Sum_probs=121.9
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcC--CCeEEeechhhhhhhhcCchhHHHHHHHHH---------HhcCCeEEEEcCcc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESG--VPFLSISGSDFMEMFVGVGPSRVRNLFQEA---------RQCAPSIIFIDEID 428 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~g--vpfi~vs~s~~~~~~vG~~~~~vr~lF~~A---------~~~aP~ILfIDEID 428 (811)
.+|||.|+||||||++|++++..+. .||+.+.+....+...|.. .+...+... .+...++||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 3799999999999999999999764 4788887543333333321 111111100 01123599999999
Q ss_pred hhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC-----------CCCcEEEEecCCCCc---ccchhhcCCCCcceeeec
Q 047690 429 AIGRARGRGGFSGANDERESTLNQLLVEMDGFG-----------TTAGVVVIAGTNRPD---ILDKALLRPGRFDRQITI 494 (811)
Q Consensus 429 aL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~-----------~~~~VIVIaaTN~pd---~LDpALlRpGRFdr~I~v 494 (811)
.+. . .+.+.|+..|+.-. -...+.||+++|..+ .|.++|+. ||+.++.+
T Consensus 95 rl~------------~---~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 95 LLD------------D---GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred hCC------------H---HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 982 2 34455555554211 124688999999765 68999999 99988777
Q ss_pred c-CCCHHHHHHHHHHHHhhcc-------------------CCC--CC-chhhhHHHhh--CCCCc-HHHHHHHHHHHHHH
Q 047690 495 D-KPDIKGRDQIFQVYLKKIK-------------------LDH--EP-SYYSQRLAAL--TPGFA-GADIANVCNEAALI 548 (811)
Q Consensus 495 ~-~Pd~~eR~eIL~~~l~~~~-------------------l~~--~~-d~~l~~LA~~--t~GfS-gaDL~~LvneAal~ 548 (811)
. .|+.++|.+|++.++.... ... .+ +..++.++.. ..|.+ .+.-..+++-|...
T Consensus 158 ~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~ 237 (589)
T TIGR02031 158 EDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAH 237 (589)
T ss_pred CCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence 6 5678889999987652210 000 00 1111222221 12333 34444566777778
Q ss_pred HHHcCCCccCHHHHHHHHHHHh
Q 047690 549 AARGENSQVTMEHFEAAIDRVI 570 (811)
Q Consensus 549 Aar~~~~~It~ed~~~Al~rvi 570 (811)
|+.+++..|+.+|+..|+.-++
T Consensus 238 Aal~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 238 AALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HHHhCCCCCCHHHHHHHHHHHh
Confidence 8889999999999999998885
No 181
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.09 E-value=2.3e-09 Score=108.71 Aligned_cols=144 Identities=19% Similarity=0.261 Sum_probs=97.6
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhcCCC------------------------eEEeechhhhhhhhcCchhHHHHHHH
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGESGVP------------------------FLSISGSDFMEMFVGVGPSRVRNLFQ 412 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp------------------------fi~vs~s~~~~~~vG~~~~~vr~lF~ 412 (811)
++|..+||+||+|+|||++|++++..+... +..+.... ...+.+.++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHHH
Confidence 567889999999999999999999986432 11111100 0112356676676
Q ss_pred HHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCc
Q 047690 413 EARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRF 488 (811)
Q Consensus 413 ~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRF 488 (811)
.+... ...||+|||+|.+.. ...+.||..|+. .....++|.+|+.++.+.+++++ |+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~---------------~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~s--r~ 147 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNE---------------AAANALLKTLEE--PPPNTLFILITPSPEKLLPTIRS--RC 147 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHh--hc
Confidence 66542 346999999999832 245667777776 33455566667777899999998 77
Q ss_pred ceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCC
Q 047690 489 DRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPG 532 (811)
Q Consensus 489 dr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~G 532 (811)
..+.+.+|+.++..++++.+ +.+ +..+..++..+.|
T Consensus 148 -~~~~~~~~~~~~~~~~l~~~----gi~---~~~~~~i~~~~~g 183 (188)
T TIGR00678 148 -QVLPFPPLSEEALLQWLIRQ----GIS---EEAAELLLALAGG 183 (188)
T ss_pred -EEeeCCCCCHHHHHHHHHHc----CCC---HHHHHHHHHHcCC
Confidence 48999999999988888776 222 1224556665554
No 182
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.08 E-value=1.5e-10 Score=111.18 Aligned_cols=113 Identities=35% Similarity=0.374 Sum_probs=70.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh--hhcCch------hHHHHHHHHHHhcCCeEEEEcCcchhhh
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM--FVGVGP------SRVRNLFQEARQCAPSIIFIDEIDAIGR 432 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~--~vG~~~------~~vr~lF~~A~~~aP~ILfIDEIDaL~~ 432 (811)
+|||+||||||||++|+.+|..++.+++.++++...+. ..|.-. ......+..+.. .++|++||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 48999999999999999999999999999998764322 111100 000000111111 4689999999876
Q ss_pred hcCCCCCCCCchHHHHHHHHHHHhhhcC-------C-CCC------cEEEEecCCCCc----ccchhhcCCCCc
Q 047690 433 ARGRGGFSGANDERESTLNQLLVEMDGF-------G-TTA------GVVVIAGTNRPD----ILDKALLRPGRF 488 (811)
Q Consensus 433 ~r~~~~~~~~~~e~~~tLnqLL~emDg~-------~-~~~------~VIVIaaTN~pd----~LDpALlRpGRF 488 (811)
+.+....++.++..-.-. . ... ++.+|+|+|..+ .+++++++ ||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 234444555555431110 0 111 489999999988 89999999 87
No 183
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.08 E-value=2.1e-09 Score=129.74 Aligned_cols=200 Identities=24% Similarity=0.351 Sum_probs=121.6
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM 398 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~ 398 (811)
+.+|++++|.+.+.+.+.+.+..+.. ....|||+|++|||||++|++|+..+ +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 45799999999999999888875432 24579999999999999999998854 679999999875321
Q ss_pred -----hhcCc-------hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh--cCC---
Q 047690 399 -----FVGVG-------PSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD--GFG--- 461 (811)
Q Consensus 399 -----~vG~~-------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD--g~~--- 461 (811)
..|.. .......|+.| ..++|||||||.+- ...+..+..++..-. ...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L~------------~~~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDMP------------LELQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhCC------------HHHHHHHHHHHHhCCEEeCCCCC
Confidence 12210 01112334433 34799999999982 233334444443311 111
Q ss_pred -CCCcEEEEecCCCCcccchhhcCCCCcce-------eeeccCCCHHHHHH----HHHHHHhhc----cCCCC--Cchhh
Q 047690 462 -TTAGVVVIAGTNRPDILDKALLRPGRFDR-------QITIDKPDIKGRDQ----IFQVYLKKI----KLDHE--PSYYS 523 (811)
Q Consensus 462 -~~~~VIVIaaTN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----IL~~~l~~~----~l~~~--~d~~l 523 (811)
...++.+|++|+.. +.. +...|+|.. .+.|..|...+|.+ +++.++.+. +.... ....+
T Consensus 507 ~~~~~~RiI~~t~~~--l~~-~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al 583 (686)
T PRK15429 507 IIQTDVRLIAATNRD--LKK-MVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETL 583 (686)
T ss_pred cccceEEEEEeCCCC--HHH-HHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 12467888888863 211 112233332 56788999988876 334444332 21111 11223
Q ss_pred hHHHhhCCCCcHHHHHHHHHHHHHHH
Q 047690 524 QRLAALTPGFAGADIANVCNEAALIA 549 (811)
Q Consensus 524 ~~LA~~t~GfSgaDL~~LvneAal~A 549 (811)
+.|....---+-++|++++++|+..+
T Consensus 584 ~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 584 RTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 44444443345678888888876653
No 184
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.9e-10 Score=121.58 Aligned_cols=131 Identities=31% Similarity=0.453 Sum_probs=88.7
Q ss_pred ccccchHhHHHHHHHHH----HhcCchhhhhcCCCCC-CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh-hh
Q 047690 327 DVAGCDEAKQEIMEFVH----FLKNPRKYEDLGAKIP-KGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM-FV 400 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~----~Lk~p~~~~~lg~~~p-kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~-~v 400 (811)
-|+|++.+|+.|.-.|- .+.+... .-...+. .++||.||.|||||+||+.+|+.+++||...++..+.+. |+
T Consensus 62 YVIGQe~AKKvLsVAVYNHYKRl~~~~~--~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYV 139 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNHYKRLNNKED--NDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYV 139 (408)
T ss_pred heecchhhhceeeeeehhHHHHHhccCC--CCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcccc
Confidence 48999999998864321 1221110 0112222 369999999999999999999999999999999988765 88
Q ss_pred cCchhH-HHHHHHHH----HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcC
Q 047690 401 GVGPSR-VRNLFQEA----RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGF 460 (811)
Q Consensus 401 G~~~~~-vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~ 460 (811)
|+.-.+ +..+++.| .+....||||||||.+.++....+.. .+-.-+.+...||..++|-
T Consensus 140 GEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SIT-RDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 140 GEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSIT-RDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred chhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcc-cccCchHHHHHHHHHHcCc
Confidence 876544 34454443 12245799999999998876432211 1122355667778888874
No 185
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.06 E-value=1.5e-09 Score=123.01 Aligned_cols=155 Identities=28% Similarity=0.378 Sum_probs=90.2
Q ss_pred ccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCC-----C--eEEee----ch
Q 047690 325 FRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGV-----P--FLSIS----GS 393 (811)
Q Consensus 325 f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gv-----p--fi~vs----~s 393 (811)
++++.+.++..+.+...+. ..++++|+||||||||++|+.+|..+.. + ++.++ ..
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 7788887766666554433 2468999999999999999999987742 1 22332 23
Q ss_pred hhhhhhh--cCch----hHHHHHHHHHHhc--CCeEEEEcCcchhhhhcCCCCCCC--CchHHHHH--HHHHHHh--hhc
Q 047690 394 DFMEMFV--GVGP----SRVRNLFQEARQC--APSIIFIDEIDAIGRARGRGGFSG--ANDEREST--LNQLLVE--MDG 459 (811)
Q Consensus 394 ~~~~~~v--G~~~----~~vr~lF~~A~~~--aP~ILfIDEIDaL~~~r~~~~~~~--~~~e~~~t--LnqLL~e--mDg 459 (811)
+|++.+. +.+- ..+.++...|+.. .|++||||||+.-...+--+..-. ..+.+... +.....+ .+.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~ 319 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEER 319 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccc
Confidence 4443331 1111 1234455666653 489999999987532221000000 00000000 0000001 123
Q ss_pred CCCCCcEEEEecCCCCc----ccchhhcCCCCcceeeeccC
Q 047690 460 FGTTAGVVVIAGTNRPD----ILDKALLRPGRFDRQITIDK 496 (811)
Q Consensus 460 ~~~~~~VIVIaaTN~pd----~LDpALlRpGRFdr~I~v~~ 496 (811)
|....++.||||+|..| .+|.||+| ||. .|++.+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 55667899999999988 79999999 994 566653
No 186
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.06 E-value=4e-09 Score=114.69 Aligned_cols=148 Identities=24% Similarity=0.324 Sum_probs=103.6
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcC---------------------
Q 047690 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESG--------------------- 384 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~g--------------------- 384 (811)
++++|.+++...+...+.. ..+.|..+||+||||||||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~----------~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALE----------SGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHh----------cCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 3678888888888777652 124566899999999999999999999875
Q ss_pred ---CCeEEeechhhhhhhhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhh
Q 047690 385 ---VPFLSISGSDFMEMFVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEM 457 (811)
Q Consensus 385 ---vpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~em 457 (811)
-.++.++.++-... ......++++-...... ..-||+|||+|.+.. ...|.++..|
T Consensus 71 ~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~---------------~A~nallk~l 133 (325)
T COG0470 71 GNHPDFLELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE---------------DAANALLKTL 133 (325)
T ss_pred cCCCceEEecccccCCC--cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH---------------HHHHHHHHHh
Confidence 35667776664321 12234555554444332 246999999999932 4567777777
Q ss_pred hcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHH
Q 047690 458 DGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQI 505 (811)
Q Consensus 458 Dg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eI 505 (811)
+. +..+..+|.+||.++.+-+.+++ |+ ..+.|.+|+...+...
T Consensus 134 Ee--p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 134 EE--PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAW 176 (325)
T ss_pred cc--CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHH
Confidence 76 45667788888999999888988 77 5777877655444433
No 187
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.05 E-value=5.3e-09 Score=121.69 Aligned_cols=206 Identities=22% Similarity=0.267 Sum_probs=132.1
Q ss_pred CccccccccchHhHHHHHHHHHHhc---Cchhhhhc-------------------CCCCCCcEEEEcCCCCCHHHHHHHH
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLK---NPRKYEDL-------------------GAKIPKGALLVGPPGTGKTLLAKAT 379 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk---~p~~~~~l-------------------g~~~pkGvLL~GPPGTGKT~LAkAl 379 (811)
.-.|.|+.|.+.+-..+..++.... .-+++.++ +-+..|-+||+||||-||||||+.+
T Consensus 267 Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHVi 346 (877)
T KOG1969|consen 267 PKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVI 346 (877)
T ss_pred hhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHH
Confidence 4579999999988777776654310 00111111 1112245789999999999999999
Q ss_pred HHhcCCCeEEeechhhhhhhhcCchhHHHHHHHHHHh--------cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHH
Q 047690 380 AGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQ--------CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLN 451 (811)
Q Consensus 380 A~e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~--------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLn 451 (811)
|+.+|..++.||+||-. +...++.-...|.. ..|..|+|||||-- ....-.++.
T Consensus 347 AkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa------------~~~~Vdvil 408 (877)
T KOG1969|consen 347 AKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA------------PRAAVDVIL 408 (877)
T ss_pred HHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCC------------cHHHHHHHH
Confidence 99999999999999843 33344444444432 35889999999753 112223333
Q ss_pred HHHHh----hhcCCC---------CC---cEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccC
Q 047690 452 QLLVE----MDGFGT---------TA---GVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKL 515 (811)
Q Consensus 452 qLL~e----mDg~~~---------~~---~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l 515 (811)
.++.. ..|-.. .. ..-||+.||. .--|||+.---|-.+|+|..|...-..+-|+..+.+.++
T Consensus 409 slv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~m 486 (877)
T KOG1969|consen 409 SLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENM 486 (877)
T ss_pred HHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcC
Confidence 33331 111110 00 1346777785 335666532237788999999998888888888888777
Q ss_pred CCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 047690 516 DHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARG 552 (811)
Q Consensus 516 ~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~ 552 (811)
..+... +..|+..|. .||++.+|.-...+.+.
T Consensus 487 r~d~~a-L~~L~el~~----~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 487 RADSKA-LNALCELTQ----NDIRSCINTLQFLASNV 518 (877)
T ss_pred CCCHHH-HHHHHHHhc----chHHHHHHHHHHHHHhc
Confidence 666533 355565555 59999999887777654
No 188
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=5e-09 Score=115.12 Aligned_cols=183 Identities=16% Similarity=0.198 Sum_probs=121.7
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC-----------------
Q 047690 324 YFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP----------------- 386 (811)
Q Consensus 324 ~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp----------------- 386 (811)
.|++|+|++++++.|...+. ..++|..+||+||+|+||+++|+++|..+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~-----------~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIK-----------QNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 58999999999999999886 34678899999999999999999999875221
Q ss_pred -eEEeechhhh-h-----h---hhc--------CchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCch
Q 047690 387 -FLSISGSDFM-E-----M---FVG--------VGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGAND 444 (811)
Q Consensus 387 -fi~vs~s~~~-~-----~---~vG--------~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~ 444 (811)
++.+...... . . ..| ..-..+|++.+.+... ...|++||++|.+.
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------- 137 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------- 137 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-------------
Confidence 1222111000 0 0 000 1123566665554322 24699999999982
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhh
Q 047690 445 ERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQ 524 (811)
Q Consensus 445 e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~ 524 (811)
....|.||..|+... +.++|..|+.++.|-|.+++ |+ ..+.|+.|+.++..++|....... ..+....
T Consensus 138 --~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~----~~~~~~~ 205 (314)
T PRK07399 138 --EAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEE----ILNINFP 205 (314)
T ss_pred --HHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccc----cchhHHH
Confidence 235678888888743 33556667788999999999 87 689999999999988888754321 1111124
Q ss_pred HHHhhCCCCcHHHHHHHHH
Q 047690 525 RLAALTPGFAGADIANVCN 543 (811)
Q Consensus 525 ~LA~~t~GfSgaDL~~Lvn 543 (811)
.++....| +++...++++
T Consensus 206 ~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 206 ELLALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHHHcCC-CHHHHHHHHH
Confidence 56666666 4444444443
No 189
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.03 E-value=2.7e-10 Score=117.04 Aligned_cols=46 Identities=41% Similarity=0.636 Sum_probs=37.1
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 324 YFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 324 ~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.|+||+|++.+|..|.-.+. | ..++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999999987665 3 4689999999999999999999844
No 190
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.01 E-value=1.3e-09 Score=109.35 Aligned_cols=134 Identities=29% Similarity=0.436 Sum_probs=84.7
Q ss_pred cccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh-----h
Q 047690 328 VAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM-----F 399 (811)
Q Consensus 328 V~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~-----~ 399 (811)
|+|.+.+.+++.+.+..+. ..+..|||+|++||||+++|++|+... +.||+.++|+.+-+. .
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 5789999999988887543 235689999999999999999999865 579999999876422 2
Q ss_pred hcCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh--cCCC----CCcE
Q 047690 400 VGVGP-------SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD--GFGT----TAGV 466 (811)
Q Consensus 400 vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD--g~~~----~~~V 466 (811)
.|... .....+|+.|.. .+||||||+.|. ...+..|.++|..-. .... ..++
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLP------------PELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-------------HHHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hccccccccccccccCCceeeccc---eEEeecchhhhH------------HHHHHHHHHHHhhchhccccccccccccc
Confidence 23211 112356666654 799999999993 344455555555411 1111 2368
Q ss_pred EEEecCCCCcccchhhcCCCCcc
Q 047690 467 VVIAGTNRPDILDKALLRPGRFD 489 (811)
Q Consensus 467 IVIaaTN~pd~LDpALlRpGRFd 489 (811)
.||++|+. .|...+. .|+|.
T Consensus 136 RiI~st~~--~l~~~v~-~g~fr 155 (168)
T PF00158_consen 136 RIIASTSK--DLEELVE-QGRFR 155 (168)
T ss_dssp EEEEEESS---HHHHHH-TTSS-
T ss_pred eEEeecCc--CHHHHHH-cCCCh
Confidence 99999985 4444443 36774
No 191
>PRK04132 replication factor C small subunit; Provisional
Probab=99.00 E-value=6.3e-09 Score=126.24 Aligned_cols=172 Identities=21% Similarity=0.199 Sum_probs=125.3
Q ss_pred EEEEc--CCCCCHHHHHHHHHHhc-----CCCeEEeechhhhhhhhcCchhHHHHHHHHHHhcCC------eEEEEcCcc
Q 047690 362 ALLVG--PPGTGKTLLAKATAGES-----GVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAP------SIIFIDEID 428 (811)
Q Consensus 362 vLL~G--PPGTGKT~LAkAlA~e~-----gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP------~ILfIDEID 428 (811)
-+..| |++.|||++|+++|+++ +.+++.+|+++.. +-..+|++...+....| .|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 36678 99999999999999997 5689999999853 23467777665543332 599999999
Q ss_pred hhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHH
Q 047690 429 AIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQV 508 (811)
Q Consensus 429 aL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~ 508 (811)
.|.. ...+.|+..|+. +...+.+|.+||.+..+.++|++ |+ ..+.|+.|+.++....|+.
T Consensus 641 ~Lt~---------------~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 641 ALTQ---------------DAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred cCCH---------------HHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 9921 245667777775 34577888889999999999998 87 6899999999999999998
Q ss_pred HHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 509 YLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 509 ~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
.+.+.++..+.+ .+..++..+.| +.+...++++.++. ....|+.+++....
T Consensus 701 I~~~Egi~i~~e-~L~~Ia~~s~G-DlR~AIn~Lq~~~~-----~~~~It~~~V~~~~ 751 (846)
T PRK04132 701 IAENEGLELTEE-GLQAILYIAEG-DMRRAINILQAAAA-----LDDKITDENVFLVA 751 (846)
T ss_pred HHHhcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHH-----hcCCCCHHHHHHHh
Confidence 888766554433 35778888876 34444444443322 12457877776543
No 192
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.99 E-value=3.4e-09 Score=109.28 Aligned_cols=201 Identities=21% Similarity=0.281 Sum_probs=121.0
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-C----CCeEEeechhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-G----VPFLSISGSDF 395 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-g----vpfi~vs~s~~ 395 (811)
.+..+.||+|.++..+.|.-+...= ..| +++|.||||||||+-+.++|+++ | --++.+++|+-
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~~g-----------nmP-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAKEG-----------NMP-NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHHcC-----------CCC-ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 3567999999999999999887631 222 58999999999999999999987 2 23567777763
Q ss_pred hhhhhcCchhHHH---HHHHHHHhc-CC---eEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEE
Q 047690 396 MEMFVGVGPSRVR---NLFQEARQC-AP---SIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVV 468 (811)
Q Consensus 396 ~~~~vG~~~~~vr---~lF~~A~~~-aP---~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIV 468 (811)
. +-.-+| ..|.+-+-. .| .||++||.|++.. + .++.+ -..|+-+.... -+
T Consensus 90 R------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~--------g----AQQAl---RRtMEiyS~tt--RF 146 (333)
T KOG0991|consen 90 R------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA--------G----AQQAL---RRTMEIYSNTT--RF 146 (333)
T ss_pred c------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh--------H----HHHHH---HHHHHHHcccc--hh
Confidence 2 222333 234444322 23 3999999999832 1 12222 23344333333 34
Q ss_pred EecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHH
Q 047690 469 IAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALI 548 (811)
Q Consensus 469 IaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~ 548 (811)
..++|..+.+-..+.+ |+- .+.+...+..+...-|....+..++....+- ++.+.-...| |+++.+|. +.
T Consensus 147 alaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dg-Leaiifta~G----DMRQalNn--LQ 216 (333)
T KOG0991|consen 147 ALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDG-LEAIIFTAQG----DMRQALNN--LQ 216 (333)
T ss_pred hhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcch-HHHhhhhccc----hHHHHHHH--HH
Confidence 5567776666555555 442 3445555555544444444444444444333 3555544444 78877775 34
Q ss_pred HHHcCCCccCHHHHHHHH
Q 047690 549 AARGENSQVTMEHFEAAI 566 (811)
Q Consensus 549 Aar~~~~~It~ed~~~Al 566 (811)
+.-.+-..|+.+.+-...
T Consensus 217 st~~g~g~Vn~enVfKv~ 234 (333)
T KOG0991|consen 217 STVNGFGLVNQENVFKVC 234 (333)
T ss_pred HHhccccccchhhhhhcc
Confidence 444566677777665554
No 193
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=4.1e-09 Score=113.64 Aligned_cols=84 Identities=31% Similarity=0.474 Sum_probs=63.5
Q ss_pred CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcC--------CCCCcEEEEecC----CCCcccchhhcCCC
Q 047690 419 PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGF--------GTTAGVVVIAGT----NRPDILDKALLRPG 486 (811)
Q Consensus 419 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~--------~~~~~VIVIaaT----N~pd~LDpALlRpG 486 (811)
-+||||||||.++.+.+.+ +.+-.++.+...||-.++|- ..++++++||+- ..|+.|-|.|.-
T Consensus 251 ~GIvFIDEIDKIa~~~~~g---~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG-- 325 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSG---GPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG-- 325 (444)
T ss_pred cCeEEEehhhHHHhcCCCC---CCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--
Confidence 4599999999998765422 22445566777777766663 245689999885 468888888864
Q ss_pred CcceeeeccCCCHHHHHHHHH
Q 047690 487 RFDRQITIDKPDIKGRDQIFQ 507 (811)
Q Consensus 487 RFdr~I~v~~Pd~~eR~eIL~ 507 (811)
||.-.+++...+.++-..||.
T Consensus 326 RfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 326 RFPIRVELDALTKEDFERILT 346 (444)
T ss_pred CCceEEEcccCCHHHHHHHHc
Confidence 999999999999988888775
No 194
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.96 E-value=1.1e-08 Score=121.19 Aligned_cols=220 Identities=13% Similarity=0.114 Sum_probs=125.5
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEE-eech---hhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLS-ISGS---DFM 396 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~-vs~s---~~~ 396 (811)
.+.+++||+|+++..++|..++..... +....+-++|+||||||||++++++|++++..++. ++.. ...
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 356899999999999988888764321 12222348999999999999999999988765433 1111 000
Q ss_pred ----------hhh--hcCchhHHHHHHHHHHh----------cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHH
Q 047690 397 ----------EMF--VGVGPSRVRNLFQEARQ----------CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLL 454 (811)
Q Consensus 397 ----------~~~--vG~~~~~vr~lF~~A~~----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL 454 (811)
..+ .....+.++.++..+.. ....|||||||+.+... .. ..+..+|
T Consensus 152 ~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~----~~lq~lL 219 (637)
T TIGR00602 152 NDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DT----RALHEIL 219 (637)
T ss_pred cccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hH----HHHHHHH
Confidence 000 01122345555555542 23569999999987421 11 1334444
Q ss_pred H-hhhcCCCCCcEEEEecCC-CCc--------------ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCC--
Q 047690 455 V-EMDGFGTTAGVVVIAGTN-RPD--------------ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLD-- 516 (811)
Q Consensus 455 ~-emDg~~~~~~VIVIaaTN-~pd--------------~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~-- 516 (811)
. .... ...+.+|++++ .+. .|.++++..-|+ .+|.|.+.+.......|+..+......
T Consensus 220 r~~~~e---~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~ 295 (637)
T TIGR00602 220 RWKYVS---IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNG 295 (637)
T ss_pred HHHhhc---CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccc
Confidence 4 2111 22233333222 121 133677742244 379999999999888888777653221
Q ss_pred CC----CchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHH-------cCCCccCHHHHHHHHH
Q 047690 517 HE----PSYYSQRLAALTPGFAGADIANVCNEAALIAAR-------GENSQVTMEHFEAAID 567 (811)
Q Consensus 517 ~~----~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar-------~~~~~It~ed~~~Al~ 567 (811)
.+ ....+..|+.... +|++.+++.-...+.+ .+...++..|+..+..
T Consensus 296 ~~~~~p~~~~l~~I~~~s~----GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~ 353 (637)
T TIGR00602 296 EKIKVPKKTSVELLCQGCS----GDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKI 353 (637)
T ss_pred cccccCCHHHHHHHHHhCC----ChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccc
Confidence 11 1123456666444 4888888755443322 2233566666665543
No 195
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=6.7e-09 Score=114.85 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=107.1
Q ss_pred ccccccc-chHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCe--E---Eeechhhhh
Q 047690 324 YFRDVAG-CDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF--L---SISGSDFME 397 (811)
Q Consensus 324 ~f~dV~G-~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpf--i---~vs~s~~~~ 397 (811)
.|++|+| ++.+++.|...+. ..++|..+||+||+|+|||++|+++|+.+.++- - .-.|.....
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~-----------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA-----------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5888999 8889999888875 346788899999999999999999998763320 0 000111100
Q ss_pred h------------hhc--CchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc
Q 047690 398 M------------FVG--VGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG 459 (811)
Q Consensus 398 ~------------~vG--~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg 459 (811)
. ..| .+-..+|++.+.+... ..-|++|||+|.+. ....|.||..++.
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~---------------~~a~NaLLK~LEE 136 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT---------------ASAANSLLKFLEE 136 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC---------------HHHHHHHHHHhcC
Confidence 0 001 1234566666554321 23599999999982 2356788888886
Q ss_pred CCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHH
Q 047690 460 FGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQ 507 (811)
Q Consensus 460 ~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~ 507 (811)
+..++++|.+|+.+..|-|.+++ |+ ..+++..|+.++..++|+
T Consensus 137 --Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 137 --PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred --CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHH
Confidence 55677777788888899999998 77 689999999888766665
No 196
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.2e-08 Score=115.03 Aligned_cols=155 Identities=24% Similarity=0.381 Sum_probs=110.7
Q ss_pred HHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCch----hHHHHHHH
Q 047690 337 EIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGP----SRVRNLFQ 412 (811)
Q Consensus 337 eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~----~~vr~lF~ 412 (811)
+-+-++..+++++++. -..+||.||||+|||.||-.+|...+.||+.+-..+- .+|.++ ..++..|+
T Consensus 522 ~G~llv~qvk~s~~s~------lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~---miG~sEsaKc~~i~k~F~ 592 (744)
T KOG0741|consen 522 DGKLLVQQVKNSERSP------LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPED---MIGLSESAKCAHIKKIFE 592 (744)
T ss_pred hHHHHHHHhhccccCc------ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHH---ccCccHHHHHHHHHHHHH
Confidence 3344566667766542 3579999999999999999999999999998754432 234443 46899999
Q ss_pred HHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCC-cEEEEecCCCCcccch-hhcCCCCcce
Q 047690 413 EARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTA-GVVVIAGTNRPDILDK-ALLRPGRFDR 490 (811)
Q Consensus 413 ~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~-~VIVIaaTN~pd~LDp-ALlRpGRFdr 490 (811)
.|.+..-+||++|+|+.|..-- .-+......++..|+..+....+.+ ..+|++||.+.+.|.. .++. .|+.
T Consensus 593 DAYkS~lsiivvDdiErLiD~v-----pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~ 665 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIERLLDYV-----PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSS 665 (744)
T ss_pred HhhcCcceEEEEcchhhhhccc-----ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhh
Confidence 9999888999999999986422 1234555677778888887765554 5777788887666644 3555 7888
Q ss_pred eeeccCCCH-HHHHHHHH
Q 047690 491 QITIDKPDI-KGRDQIFQ 507 (811)
Q Consensus 491 ~I~v~~Pd~-~eR~eIL~ 507 (811)
.++||.-+. ++..+++.
T Consensus 666 ~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 666 TIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred eeecCccCchHHHHHHHH
Confidence 898886544 44454443
No 197
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.91 E-value=1.2e-08 Score=113.67 Aligned_cols=162 Identities=26% Similarity=0.404 Sum_probs=105.2
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-------CCCeEEe---
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-------GVPFLSI--- 390 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-------gvpfi~v--- 390 (811)
....|.-++|++..|..|.-.. -+|+. .|+||.|+.|||||+++||||.-+ |+||-.-
T Consensus 12 ~~~pf~aivGqd~lk~aL~l~a---v~P~i---------ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 12 ENLPFTAIVGQDPLKLALGLNA---VDPQI---------GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred hccchhhhcCchHHHHHHhhhh---ccccc---------ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 4578999999999888875432 23332 489999999999999999999976 3333210
Q ss_pred ---echh-------------------hhhhhhcCchhHH------HHHHH----------HHHhcCCeEEEEcCcchhhh
Q 047690 391 ---SGSD-------------------FMEMFVGVGPSRV------RNLFQ----------EARQCAPSIIFIDEIDAIGR 432 (811)
Q Consensus 391 ---s~s~-------------------~~~~~vG~~~~~v------r~lF~----------~A~~~aP~ILfIDEIDaL~~ 432 (811)
.|.+ |+..-.+.++.++ ....+ .|+.+ -.||||||+..|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL-- 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLL-- 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccc--
Confidence 1111 1222223344432 11111 12222 359999999776
Q ss_pred hcCCCCCCCCchHHHHHHHHHHHhhhc---------C--CCCCcEEEEecCCCCc-ccchhhcCCCCcceeeeccCC-CH
Q 047690 433 ARGRGGFSGANDERESTLNQLLVEMDG---------F--GTTAGVVVIAGTNRPD-ILDKALLRPGRFDRQITIDKP-DI 499 (811)
Q Consensus 433 ~r~~~~~~~~~~e~~~tLnqLL~emDg---------~--~~~~~VIVIaaTN~pd-~LDpALlRpGRFdr~I~v~~P-d~ 499 (811)
. .+.++.||..+.. + .-..++++|+|+|..+ .|-|.|+. ||...+.+..| +.
T Consensus 157 ----------~---d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~ 221 (423)
T COG1239 157 ----------D---DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDL 221 (423)
T ss_pred ----------c---HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCH
Confidence 2 2455555554432 2 2235799999999653 68889998 99999998866 77
Q ss_pred HHHHHHHHHHHhh
Q 047690 500 KGRDQIFQVYLKK 512 (811)
Q Consensus 500 ~eR~eIL~~~l~~ 512 (811)
++|.+|.+..+.-
T Consensus 222 ~~rv~Ii~r~~~f 234 (423)
T COG1239 222 EERVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHHHh
Confidence 8899998877653
No 198
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.90 E-value=2.8e-08 Score=115.18 Aligned_cols=211 Identities=24% Similarity=0.290 Sum_probs=125.6
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCC----------CeEEeec
Q 047690 323 VYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGV----------PFLSISG 392 (811)
Q Consensus 323 v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gv----------pfi~vs~ 392 (811)
..|.++.|+..+++.+.-. +.....++|+||||||||++++.+++.+.- .++++.+
T Consensus 188 ~d~~~v~Gq~~~~~al~la--------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT--------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhee--------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 4789999998877664321 122356999999999999999999975421 1111111
Q ss_pred h----------hhhhh--------hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHH
Q 047690 393 S----------DFMEM--------FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLL 454 (811)
Q Consensus 393 s----------~~~~~--------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL 454 (811)
. -|... .+|.+..--...+..|. ..+|||||++.+- . .++..|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~---gGvLfLDEi~e~~------------~---~~~~~L~ 315 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAH---NGVLFLDELPEFE------------R---RTLDALR 315 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhcc---CCEEecCCchhCC------------H---HHHHHHH
Confidence 0 01111 22222111122344443 3699999998762 2 3444444
Q ss_pred HhhhcCC-----------CCCcEEEEecCCCCc---------------------ccchhhcCCCCcceeeeccCCCHHH-
Q 047690 455 VEMDGFG-----------TTAGVVVIAGTNRPD---------------------ILDKALLRPGRFDRQITIDKPDIKG- 501 (811)
Q Consensus 455 ~emDg~~-----------~~~~VIVIaaTN~pd---------------------~LDpALlRpGRFdr~I~v~~Pd~~e- 501 (811)
+-|+.-. -..++.+|+|+|... .|..+++. |||.++.++.|+.++
T Consensus 316 ~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l 393 (506)
T PRK09862 316 EPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGIL 393 (506)
T ss_pred HHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHH
Confidence 4443211 135689999999742 36778888 999999999885321
Q ss_pred ---------HHHHHHHHH-------h--h-ccCCCCC----------chhhh--HHHhhCCCCcHHHHHHHHHHHHHHHH
Q 047690 502 ---------RDQIFQVYL-------K--K-IKLDHEP----------SYYSQ--RLAALTPGFAGADIANVCNEAALIAA 550 (811)
Q Consensus 502 ---------R~eIL~~~l-------~--~-~~l~~~~----------d~~l~--~LA~~t~GfSgaDL~~LvneAal~Aa 550 (811)
..+|-+... . . .+..... +...+ .-+....|.|.+....+++-|..+|.
T Consensus 394 ~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiAD 473 (506)
T PRK09862 394 SKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIAD 473 (506)
T ss_pred hcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 111221110 0 0 0100000 00001 11223457899999999999999999
Q ss_pred HcCCCccCHHHHHHHHH
Q 047690 551 RGENSQVTMEHFEAAID 567 (811)
Q Consensus 551 r~~~~~It~ed~~~Al~ 567 (811)
.++++.|+.+|+.+|+.
T Consensus 474 L~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 474 IDQSDIITRQHLQEAVS 490 (506)
T ss_pred HcCCCCCCHHHHHHHHH
Confidence 99999999999999985
No 199
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.90 E-value=9.4e-09 Score=117.55 Aligned_cols=209 Identities=22% Similarity=0.304 Sum_probs=123.4
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhh-
Q 047690 324 YFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMF- 399 (811)
Q Consensus 324 ~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~- 399 (811)
.+.+++|.+...+.+.+.+..+.. ....++|+|++||||+++|++++... +.||+.++|..+.+..
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAP----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 566799998888888776654322 23568999999999999999998765 5799999998763221
Q ss_pred ----hcCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh--cCC----C
Q 047690 400 ----VGVGP-------SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD--GFG----T 462 (811)
Q Consensus 400 ----vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD--g~~----~ 462 (811)
.|... ......|.. ...++|||||||.|. ...+..+.+++.+-. ... .
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l~------------~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDLP------------LNLQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhCC------------HHHHHHHHHHHhhCeEEeCCCCcee
Confidence 11100 000111222 235799999999982 233444444444311 001 1
Q ss_pred CCcEEEEecCCCCc-------ccchhhcCCCCcceeeeccCCCHHHHHH----HHHHHHhhc----cCC-CC-CchhhhH
Q 047690 463 TAGVVVIAGTNRPD-------ILDKALLRPGRFDRQITIDKPDIKGRDQ----IFQVYLKKI----KLD-HE-PSYYSQR 525 (811)
Q Consensus 463 ~~~VIVIaaTN~pd-------~LDpALlRpGRFdr~I~v~~Pd~~eR~e----IL~~~l~~~----~l~-~~-~d~~l~~ 525 (811)
..++.+|++|+..- .+.+.|.. |+ ..+.|..|...+|.+ +++.++... +.. .. ....++.
T Consensus 272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 348 (445)
T TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRA 348 (445)
T ss_pred eeceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 12578888887531 12222322 33 246788899888876 344444332 211 11 1222355
Q ss_pred HHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 047690 526 LAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFE 563 (811)
Q Consensus 526 LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~ 563 (811)
+....---+.++|++++++|+..+ ....|+.+|+.
T Consensus 349 L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l~ 383 (445)
T TIGR02915 349 LEAHAWPGNVRELENKVKRAVIMA---EGNQITAEDLG 383 (445)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHcC
Confidence 555553346788999988887654 44567777653
No 200
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.4e-09 Score=119.44 Aligned_cols=47 Identities=43% Similarity=0.589 Sum_probs=40.4
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e 382 (811)
...|.||+|++.+|..|..-.. --+++|++||||||||++|+-+.+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA--------------GgHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA--------------GGHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh--------------cCCcEEEecCCCCchHHhhhhhccc
Confidence 4589999999999999887654 2468999999999999999998764
No 201
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.89 E-value=1.8e-08 Score=116.05 Aligned_cols=212 Identities=20% Similarity=0.319 Sum_probs=127.4
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh--
Q 047690 324 YFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM-- 398 (811)
Q Consensus 324 ~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~-- 398 (811)
.+.+++|.+.+.+.+.+.+..+.. ....+||+|++|||||++|++++... +.||+.++|+.+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSR----------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhc----------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 467899999888888877764332 23469999999999999999999875 579999999876322
Q ss_pred ---hhcCchh------H-HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh--cCCC----
Q 047690 399 ---FVGVGPS------R-VRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD--GFGT---- 462 (811)
Q Consensus 399 ---~vG~~~~------~-vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD--g~~~---- 462 (811)
..|.... . ....|+. ...+.|||||||.+. ...+..+..++.+-. ....
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l~~i~~l~------------~~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFLDEIGDMP------------LDVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEEeccccCC------------HHHHHHHHHHHhcCcEEeCCCCCeE
Confidence 1111100 0 0111222 235699999999983 233334444443311 0001
Q ss_pred CCcEEEEecCCCCc-------ccchhhcCCCCcceeeeccCCCHHHHHH----HHHHHHhhc----cCCC--CCchhhhH
Q 047690 463 TAGVVVIAGTNRPD-------ILDKALLRPGRFDRQITIDKPDIKGRDQ----IFQVYLKKI----KLDH--EPSYYSQR 525 (811)
Q Consensus 463 ~~~VIVIaaTN~pd-------~LDpALlRpGRFdr~I~v~~Pd~~eR~e----IL~~~l~~~----~l~~--~~d~~l~~ 525 (811)
..++.+|++|+..- .+.+.|.. ||. .+.+..|...+|.+ +++++++.. +... -....++.
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 347 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAA 347 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 23567888887521 23334443 442 46777888777765 445555432 1111 11222355
Q ss_pred HHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 526 LAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 526 LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
|....---+-++|+++++.|+..+ ....|+.+|+...+
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 555554446788999998877655 45678888886544
No 202
>PRK08116 hypothetical protein; Validated
Probab=98.89 E-value=1.1e-08 Score=110.15 Aligned_cols=130 Identities=22% Similarity=0.323 Sum_probs=76.7
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhhhc----CchhHHHHHHHHHHhcCCeEEEEcCcchhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMFVG----VGPSRVRNLFQEARQCAPSIIFIDEIDAIG 431 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~vG----~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 431 (811)
+.|++|+|+||||||+||.|+|+++ +.+++.++.++++..+.. .+......+++... ...+|+|||+...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e- 190 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE- 190 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC-
Confidence 4689999999999999999999975 789999999888765421 11122223333322 3459999999542
Q ss_pred hhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCC-cc----cchhhcCCCCc---ceeeeccCCCHHHHH
Q 047690 432 RARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRP-DI----LDKALLRPGRF---DRQITIDKPDIKGRD 503 (811)
Q Consensus 432 ~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~p-d~----LDpALlRpGRF---dr~I~v~~Pd~~eR~ 503 (811)
...+.....+..++ +.... .+..+|.|||.+ +. ++..+.+ |+ ...|.+..||. |.
T Consensus 191 ---------~~t~~~~~~l~~ii---n~r~~-~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~ 253 (268)
T PRK08116 191 ---------RDTEWAREKVYNII---DSRYR-KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RK 253 (268)
T ss_pred ---------CCCHHHHHHHHHHH---HHHHH-CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hH
Confidence 11223333344444 33222 223466677753 33 3555655 53 23466666664 44
Q ss_pred HHHHH
Q 047690 504 QIFQV 508 (811)
Q Consensus 504 eIL~~ 508 (811)
.+.+.
T Consensus 254 ~~~~e 258 (268)
T PRK08116 254 EIAKE 258 (268)
T ss_pred HHHHH
Confidence 44443
No 203
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.89 E-value=2.1e-08 Score=111.08 Aligned_cols=84 Identities=20% Similarity=0.280 Sum_probs=65.1
Q ss_pred ccc-ccccchHhHHHHHHHHHHhcCchhhhhcCCC-CCCcEEEEcCCCCCHHHHHHHHHHhcCC-------CeEEeec--
Q 047690 324 YFR-DVAGCDEAKQEIMEFVHFLKNPRKYEDLGAK-IPKGALLVGPPGTGKTLLAKATAGESGV-------PFLSISG-- 392 (811)
Q Consensus 324 ~f~-dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~-~pkGvLL~GPPGTGKT~LAkAlA~e~gv-------pfi~vs~-- 392 (811)
-|+ ++.|++++++++.+.+.... .|.. ..+.++|+||||||||+||++|++.++. |++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a-------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA-------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH-------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 466 89999999888777665422 1222 2466899999999999999999999977 9999988
Q ss_pred --hhhhhhhhcCchhHHHHHHHHH
Q 047690 393 --SDFMEMFVGVGPSRVRNLFQEA 414 (811)
Q Consensus 393 --s~~~~~~vG~~~~~vr~lF~~A 414 (811)
+.+.+..++..+..+|..|.+.
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHHHH
Confidence 7777777777777777766543
No 204
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.87 E-value=4.5e-09 Score=105.77 Aligned_cols=111 Identities=32% Similarity=0.374 Sum_probs=74.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCC----CeEEeechhhhhhhhcCchhHHHHHHHHH----HhcCCeEEEEcCcchhhh
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGV----PFLSISGSDFMEMFVGVGPSRVRNLFQEA----RQCAPSIIFIDEIDAIGR 432 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gv----pfi~vs~s~~~~~~vG~~~~~vr~lF~~A----~~~aP~ILfIDEIDaL~~ 432 (811)
.+||+||+|||||.+|+++|..+.. +++.++++++.+. ......+..++..+ ......||||||||.+.+
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 5799999999999999999999996 9999999998761 11112222222211 111123999999999976
Q ss_pred hcCCCCCCCCchHHHHHHHHHHHhhhcCC---------CCCcEEEEecCCCCcc
Q 047690 433 ARGRGGFSGANDERESTLNQLLVEMDGFG---------TTAGVVVIAGTNRPDI 477 (811)
Q Consensus 433 ~r~~~~~~~~~~e~~~tLnqLL~emDg~~---------~~~~VIVIaaTN~pd~ 477 (811)
..+ .+.+.....+.+.||..+|+-. ...++++|+|+|.-..
T Consensus 83 ~~~----~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 83 SNS----GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp TTT----TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred ccc----ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 521 1334445677788888776421 2347899999996443
No 205
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=1.8e-08 Score=111.41 Aligned_cols=131 Identities=21% Similarity=0.271 Sum_probs=96.0
Q ss_pred CCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC------------------------eEEeechhhhhhhhcCchhHHHHHH
Q 047690 356 AKIPKGALLVGPPGTGKTLLAKATAGESGVP------------------------FLSISGSDFMEMFVGVGPSRVRNLF 411 (811)
Q Consensus 356 ~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp------------------------fi~vs~s~~~~~~vG~~~~~vr~lF 411 (811)
.++|.++||+||+|+|||++|+++|+.+.+. ++.+...+- -...+-..+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---~~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---DKTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC---CCCCCHHHHHHHH
Confidence 5678899999999999999999999976431 122211000 0012335777776
Q ss_pred HHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCC
Q 047690 412 QEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGR 487 (811)
Q Consensus 412 ~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGR 487 (811)
+.+... ..-|++||++|.+. ....|.||..++. +..++++|.+|+.++.|.|.+++ |
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~---------------~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--R 156 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMN---------------RNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--R 156 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCC---------------HHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--h
Confidence 665432 24589999999982 3467888888887 55678888999999999999999 8
Q ss_pred cceeeeccCCCHHHHHHHHHHH
Q 047690 488 FDRQITIDKPDIKGRDQIFQVY 509 (811)
Q Consensus 488 Fdr~I~v~~Pd~~eR~eIL~~~ 509 (811)
+. .+.|++|+.++..+.|...
T Consensus 157 c~-~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 157 CQ-QQACPLPSNEESLQWLQQA 177 (328)
T ss_pred ce-eeeCCCcCHHHHHHHHHHh
Confidence 84 6999999998887777654
No 206
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.85 E-value=3.3e-08 Score=113.32 Aligned_cols=212 Identities=23% Similarity=0.325 Sum_probs=125.1
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh--
Q 047690 324 YFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM-- 398 (811)
Q Consensus 324 ~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~-- 398 (811)
.+..++|.+.....+.+.+..+.. ....+|++|++||||+++|++++... +.||+.++|..+.+.
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIAL----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcC----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 456789988887777766654332 23469999999999999999998764 579999999876332
Q ss_pred ---hhcCchh-------HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh--cCCC----
Q 047690 399 ---FVGVGPS-------RVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD--GFGT---- 462 (811)
Q Consensus 399 ---~vG~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD--g~~~---- 462 (811)
..|.... .....|..| ...+|||||||.+. ...+..+..++..-. ....
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~------------~~~q~~L~~~l~~~~~~~~~~~~~~ 275 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMP------------LVLQAKLLRILQEREFERIGGHQTI 275 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCC------------HHHHHHHHHHHhcCcEEeCCCCcee
Confidence 1111100 001122222 34699999999983 223333444443311 1111
Q ss_pred CCcEEEEecCCCCcccchhhcCCCCcce-------eeeccCCCHHHHHH----HHHHHHhhcc----CC-CC-CchhhhH
Q 047690 463 TAGVVVIAGTNRPDILDKALLRPGRFDR-------QITIDKPDIKGRDQ----IFQVYLKKIK----LD-HE-PSYYSQR 525 (811)
Q Consensus 463 ~~~VIVIaaTN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----IL~~~l~~~~----l~-~~-~d~~l~~ 525 (811)
..++.+|++||.. ++ .+.+.|+|.. .+.+..|+..+|.+ ++..++.... .. .. ....++.
T Consensus 276 ~~~~rii~~t~~~--l~-~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 352 (457)
T PRK11361 276 KVDIRIIAATNRD--LQ-AMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSL 352 (457)
T ss_pred eeceEEEEeCCCC--HH-HHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 1357889888853 22 2333445543 46788899888866 3334443321 11 01 1222344
Q ss_pred HHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 526 LAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 526 LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
+....---..++|++++++|+..+ ....|+.+|+...+
T Consensus 353 L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 353 LTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 554443446788888888876553 45678888876543
No 207
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.82 E-value=6.7e-08 Score=117.11 Aligned_cols=134 Identities=22% Similarity=0.251 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhc-------CCCeEEeechhhhhhh-hcCchhHH-HHHHHHHHhcCCeEEEEcCc
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGES-------GVPFLSISGSDFMEMF-VGVGPSRV-RNLFQEARQCAPSIIFIDEI 427 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~-------gvpfi~vs~s~~~~~~-vG~~~~~v-r~lF~~A~~~aP~ILfIDEI 427 (811)
+-..+|||+|+||||||.+|+++++.+ |.++..+.+..+.... ...++-.+ ...+.. ...++++|||+
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvl---AdgGtL~IDEi 566 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVL---ANGGVCCIDEL 566 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEE---cCCCeEEecch
Confidence 334479999999999999999999854 2455555554432100 00010000 001111 12369999999
Q ss_pred chhhhhcCCCCCCCCchHHHHHHHHHHHhhh------cC--CCCCcEEEEecCCCCc-------------ccchhhcCCC
Q 047690 428 DAIGRARGRGGFSGANDERESTLNQLLVEMD------GF--GTTAGVVVIAGTNRPD-------------ILDKALLRPG 486 (811)
Q Consensus 428 DaL~~~r~~~~~~~~~~e~~~tLnqLL~emD------g~--~~~~~VIVIaaTN~pd-------------~LDpALlRpG 486 (811)
|.+- ...+..|.+++.+=. |. .-+.++.||||+|... .|+++|++
T Consensus 567 dkms------------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS-- 632 (915)
T PTZ00111 567 DKCH------------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT-- 632 (915)
T ss_pred hhCC------------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--
Confidence 9982 222333434332210 11 1135789999999742 37899999
Q ss_pred Ccceee-eccCCCHHHHHHHHH
Q 047690 487 RFDRQI-TIDKPDIKGRDQIFQ 507 (811)
Q Consensus 487 RFdr~I-~v~~Pd~~eR~eIL~ 507 (811)
|||..+ .++.|+.+.=..|-+
T Consensus 633 RFDLIf~l~D~~d~~~D~~lA~ 654 (915)
T PTZ00111 633 RFDLIYLVLDHIDQDTDQLISL 654 (915)
T ss_pred hhcEEEEecCCCChHHHHHHHH
Confidence 999774 455777655444433
No 208
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.81 E-value=4.7e-08 Score=116.15 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=63.9
Q ss_pred cEEEEecCCCC--cccchhhcCCCCcc---eeeecc--CC-CHHHHHHHHHHHHhhccCC---CCC-chhhhHHHh----
Q 047690 465 GVVVIAGTNRP--DILDKALLRPGRFD---RQITID--KP-DIKGRDQIFQVYLKKIKLD---HEP-SYYSQRLAA---- 528 (811)
Q Consensus 465 ~VIVIaaTN~p--d~LDpALlRpGRFd---r~I~v~--~P-d~~eR~eIL~~~l~~~~l~---~~~-d~~l~~LA~---- 528 (811)
++.||+++|+. ..+||+|.. ||. ..+.++ .+ +.+.+..+++...+..... ... ...+..+.+
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57888888874 457899988 875 344444 22 2455666665544433211 111 111122221
Q ss_pred hC---CC--CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Q 047690 529 LT---PG--FAGADIANVCNEAALIAARGENSQVTMEHFEAAIDR 568 (811)
Q Consensus 529 ~t---~G--fSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~r 568 (811)
.. .- ..-++|.+++++|...|..++...|+.+|+.+|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 11 11 336899999999999999888899999999998864
No 209
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.80 E-value=1.5e-07 Score=109.68 Aligned_cols=196 Identities=20% Similarity=0.272 Sum_probs=126.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc----------CCCeEEeechhhhhh----------hhcCch------hHHHHHHHHH
Q 047690 361 GALLVGPPGTGKTLLAKATAGES----------GVPFLSISGSDFMEM----------FVGVGP------SRVRNLFQEA 414 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~----------gvpfi~vs~s~~~~~----------~vG~~~------~~vr~lF~~A 414 (811)
.+.++|-||||||.+++.+-.++ ..+++.||+-.+.+. +.|... ..+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 68899999999999999998754 356788887655432 222211 1222223311
Q ss_pred -HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcC--CCCcc-e
Q 047690 415 -RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLR--PGRFD-R 490 (811)
Q Consensus 415 -~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlR--pGRFd-r 490 (811)
-...+|||+|||+|.|+.+. +.++..|+.+.. .++..++||+..|..+....-|.. ..|++ +
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~------------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~t 569 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS------------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLT 569 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc------------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhccce
Confidence 12357999999999997543 346666655432 245678888888876543333321 12554 4
Q ss_pred eeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcH--HHHHHHHHHHHHHHHHcCC-------CccCHHH
Q 047690 491 QITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAG--ADIANVCNEAALIAARGEN-------SQVTMEH 561 (811)
Q Consensus 491 ~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSg--aDL~~LvneAal~Aar~~~-------~~It~ed 561 (811)
.|.|.+++.++.++|+...|+....- .+..++-+|+.....|| +....+|++|+..|..+.. ..|++.|
T Consensus 570 Ri~F~pYth~qLq~Ii~~RL~~~~~f--~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~ 647 (767)
T KOG1514|consen 570 RICFQPYTHEQLQEIISARLKGLDAF--ENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILH 647 (767)
T ss_pred eeecCCCCHHHHHHHHHHhhcchhhc--chhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHH
Confidence 68999999999999999999876221 11122334443333333 4456789999988877655 5689999
Q ss_pred HHHHHHHHhcC
Q 047690 562 FEAAIDRVIGG 572 (811)
Q Consensus 562 ~~~Al~rvi~g 572 (811)
+.+|+..++..
T Consensus 648 v~~Ai~em~~~ 658 (767)
T KOG1514|consen 648 VMEAINEMLAS 658 (767)
T ss_pred HHHHHHHHhhh
Confidence 99999887543
No 210
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.79 E-value=3e-08 Score=98.79 Aligned_cols=133 Identities=23% Similarity=0.336 Sum_probs=89.0
Q ss_pred cchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCC-----------------------C
Q 047690 330 GCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGV-----------------------P 386 (811)
Q Consensus 330 G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gv-----------------------p 386 (811)
|++++++.|.+.+. ..++|..+||+||+|+||+++|+++|..+-. .
T Consensus 1 gq~~~~~~L~~~~~-----------~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIK-----------SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHH-----------CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHH-----------cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 77888888888776 3467889999999999999999999987522 1
Q ss_pred eEEeechhhhhhhhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCC
Q 047690 387 FLSISGSDFMEMFVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGT 462 (811)
Q Consensus 387 fi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~ 462 (811)
++.++..... .....+.++.+...+... ..-|++|||+|.+. ....|.||..|+. +
T Consensus 70 ~~~~~~~~~~---~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~---------------~~a~NaLLK~LEe--p 129 (162)
T PF13177_consen 70 FIIIKPDKKK---KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT---------------EEAQNALLKTLEE--P 129 (162)
T ss_dssp EEEEETTTSS---SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS----------------HHHHHHHHHHHHS--T
T ss_pred eEEEeccccc---chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh---------------HHHHHHHHHHhcC--C
Confidence 2222221110 012345677666655332 34599999999982 3467888888886 5
Q ss_pred CCcEEEEecCCCCcccchhhcCCCCcceeeeccC
Q 047690 463 TAGVVVIAGTNRPDILDKALLRPGRFDRQITIDK 496 (811)
Q Consensus 463 ~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~ 496 (811)
..++++|.+|+.++.|-|.+++ |+ ..+.++.
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred CCCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 5788888899999999999999 77 3555543
No 211
>PRK15115 response regulator GlrR; Provisional
Probab=98.78 E-value=1.1e-07 Score=108.72 Aligned_cols=209 Identities=23% Similarity=0.331 Sum_probs=123.0
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhhh---
Q 047690 327 DVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMFV--- 400 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~v--- 400 (811)
.++|.+.....+.+.+..+.. ....++|+|++|||||++|++++... +.||+.++|..+.+...
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ----------SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc----------CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 567777766666555544321 23468999999999999999998865 57999999987632211
Q ss_pred --cCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh--cCCC----CCc
Q 047690 401 --GVGP-------SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD--GFGT----TAG 465 (811)
Q Consensus 401 --G~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD--g~~~----~~~ 465 (811)
|... .....+|.. ....+|||||||.|. ...+..+..++..-. .... ..+
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l~------------~~~q~~L~~~l~~~~~~~~g~~~~~~~~ 269 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQA---AEGGTLFLDEIGDMP------------APLQVKLLRVLQERKVRPLGSNRDIDID 269 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEEE---CCCCEEEEEccccCC------------HHHHHHHHHHHhhCCEEeCCCCceeeee
Confidence 1100 000111222 234799999999983 233334444443311 1111 126
Q ss_pred EEEEecCCCCcccchhhcCCCCcce-------eeeccCCCHHHHHH----HHHHHHhhc----cCCC--CCchhhhHHHh
Q 047690 466 VVVIAGTNRPDILDKALLRPGRFDR-------QITIDKPDIKGRDQ----IFQVYLKKI----KLDH--EPSYYSQRLAA 528 (811)
Q Consensus 466 VIVIaaTN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----IL~~~l~~~----~l~~--~~d~~l~~LA~ 528 (811)
+.+|++|+. .++..+.+ |+|.. .+.+..|...+|.+ +++.+++.. +... -.+..++.|..
T Consensus 270 ~rii~~~~~--~l~~~~~~-~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 346 (444)
T PRK15115 270 VRIISATHR--DLPKAMAR-GEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMT 346 (444)
T ss_pred EEEEEeCCC--CHHHHHHc-CCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 788888885 34444433 56632 46778899998865 334454432 1111 11223456666
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 529 LTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 529 ~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
..-.-+.++|.++++.|+..+ ....|+.+++...+
T Consensus 347 ~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 381 (444)
T PRK15115 347 ASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQAL 381 (444)
T ss_pred CCCCChHHHHHHHHHHHHHhC---CCCccChhhhhhhh
Confidence 663446788888888876543 45678888876543
No 212
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.6e-08 Score=110.38 Aligned_cols=98 Identities=33% Similarity=0.515 Sum_probs=71.7
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh-hhhcCc-hhHHHHHHHHHH----hcCCeEEEEcCcchhhhh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME-MFVGVG-PSRVRNLFQEAR----QCAPSIIFIDEIDAIGRA 433 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~-~~vG~~-~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~ 433 (811)
.+|||.||+|+|||+||+.||+-+++||...+|..+.. .|+|+. +.-+..++..|. +.+..||||||+|.|..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 37999999999999999999999999999999998854 488876 445666766652 345679999999999844
Q ss_pred cCCCCCCCC-chHHHHHHHHHHHhhhc
Q 047690 434 RGRGGFSGA-NDERESTLNQLLVEMDG 459 (811)
Q Consensus 434 r~~~~~~~~-~~e~~~tLnqLL~emDg 459 (811)
...- ... +-.-+.+...||..++|
T Consensus 307 ~~~i--~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESI--HTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred Cccc--cccccccchhHHHHHHHHhcc
Confidence 3211 111 11224556667777665
No 213
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.76 E-value=1.9e-07 Score=99.42 Aligned_cols=92 Identities=13% Similarity=0.180 Sum_probs=70.0
Q ss_pred CcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCC
Q 047690 475 PDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGEN 554 (811)
Q Consensus 475 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~ 554 (811)
|.-++-.|+. |. ..|...+++.++.++||+..+.......+++. ++.+......-+-+-..+|+.-|.+.|.++..
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A-~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~ 414 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDA-LDLLTKIGEATSLRYAIHLITAASLVCLKRKG 414 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 4446666665 54 35777788999999999999987666655544 35555555555667778889999999999999
Q ss_pred CccCHHHHHHHHHHHh
Q 047690 555 SQVTMEHFEAAIDRVI 570 (811)
Q Consensus 555 ~~It~ed~~~Al~rvi 570 (811)
..+..+|++.+.+-.+
T Consensus 415 ~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 415 KVVEVDDIERVYRLFL 430 (454)
T ss_pred ceeehhHHHHHHHHHh
Confidence 9999999999987554
No 214
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.74 E-value=1.5e-07 Score=108.27 Aligned_cols=211 Identities=23% Similarity=0.354 Sum_probs=122.7
Q ss_pred ccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh---
Q 047690 325 FRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM--- 398 (811)
Q Consensus 325 f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~--- 398 (811)
+.+++|.+.+..++.+.+..+.. .+..+++.|++||||+++|++++... +.||+.++|..+.+.
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSR----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhC----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 35688998888888777654332 23478999999999999999998764 679999999876322
Q ss_pred --hhcCchhH-------HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc--CC----CC
Q 047690 399 --FVGVGPSR-------VRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG--FG----TT 463 (811)
Q Consensus 399 --~vG~~~~~-------vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg--~~----~~ 463 (811)
..|..... ....|. ....++|||||||.+. ...+..+..++.+-.. .. ..
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l~------------~~~q~~ll~~l~~~~~~~~~~~~~~~ 267 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDMP------------LDAQTRLLRVLADGEFYRVGGRTPIK 267 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhCC------------HHHHHHHHHHHhcCcEEECCCCceee
Confidence 11211000 001111 2235799999999982 2334445555543210 01 11
Q ss_pred CcEEEEecCCCCcccchhhcCCCCcc-------eeeeccCCCHHHHHH----HHHHHHhhcc----CCC-C-CchhhhHH
Q 047690 464 AGVVVIAGTNRPDILDKALLRPGRFD-------RQITIDKPDIKGRDQ----IFQVYLKKIK----LDH-E-PSYYSQRL 526 (811)
Q Consensus 464 ~~VIVIaaTN~pd~LDpALlRpGRFd-------r~I~v~~Pd~~eR~e----IL~~~l~~~~----l~~-~-~d~~l~~L 526 (811)
.++.||++|+.. ++ .+...|+|. ..+.+..|...+|.+ +++.+++... ... . .+..++.|
T Consensus 268 ~~~rii~~~~~~--l~-~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 344 (463)
T TIGR01818 268 VDVRIVAATHQN--LE-ALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERL 344 (463)
T ss_pred eeeEEEEeCCCC--HH-HHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 256788888753 21 222233443 135677777666654 4444444321 111 1 12223444
Q ss_pred HhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 527 AALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 527 A~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
....---+-++|.++++.|+..+ ....|+.+|+...+
T Consensus 345 ~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 345 KQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 44433234588999998887655 45678888887655
No 215
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.73 E-value=2e-08 Score=97.04 Aligned_cols=78 Identities=29% Similarity=0.494 Sum_probs=58.1
Q ss_pred ccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcC---CCeEEeechhhhhhhhcCchh
Q 047690 329 AGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESG---VPFLSISGSDFMEMFVGVGPS 405 (811)
Q Consensus 329 ~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~g---vpfi~vs~s~~~~~~vG~~~~ 405 (811)
+|.+.+.+++++.+..+.. ....|||+|++||||+++|++|+.... .||+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhC----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 5778888888888876543 245799999999999999999998764 478888887642
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchh
Q 047690 406 RVRNLFQEARQCAPSIIFIDEIDAI 430 (811)
Q Consensus 406 ~vr~lF~~A~~~aP~ILfIDEIDaL 430 (811)
.++++.+ ...+|||+|||.+
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L 81 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRL 81 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS
T ss_pred --HHHHHHc---CCCEEEECChHHC
Confidence 3455554 5689999999998
No 216
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=5.7e-08 Score=107.79 Aligned_cols=134 Identities=21% Similarity=0.256 Sum_probs=96.1
Q ss_pred CCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeE---Eeech--------------hhhhhh-------------------
Q 047690 356 AKIPKGALLVGPPGTGKTLLAKATAGESGVPFL---SISGS--------------DFMEMF------------------- 399 (811)
Q Consensus 356 ~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi---~vs~s--------------~~~~~~------------------- 399 (811)
.++|.++||+||+|+||+++|+++|+.+.+.-- .-.|. |+....
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 478999999999999999999999987644210 00111 000000
Q ss_pred ------------hcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCC
Q 047690 400 ------------VGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTT 463 (811)
Q Consensus 400 ------------vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~ 463 (811)
...+-..+|++.+.+... .--|++||++|.+. ...-|.||..++. +.
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~---------------~~AaNaLLKtLEE--Pp 160 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN---------------VAAANALLKTLEE--PP 160 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC---------------HHHHHHHHHHhcC--CC
Confidence 011234667766554322 13499999999982 3467888888886 67
Q ss_pred CcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHH
Q 047690 464 AGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVY 509 (811)
Q Consensus 464 ~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~ 509 (811)
.++++|..|++++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 161 ~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 161 PGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 788999999999999999999 88 68999999998888877653
No 217
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=4.7e-07 Score=101.73 Aligned_cols=224 Identities=21% Similarity=0.229 Sum_probs=144.2
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-----CCCeEEeechhhhh----
Q 047690 327 DVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSISGSDFME---- 397 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs~s~~~~---- 397 (811)
.+.|-+.-+..+++|+.. .+...-+..+.++|.||||||.+..-+-... ....++++|.++.+
T Consensus 151 ~l~gRe~e~~~v~~F~~~--------hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSL--------HLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred CccchHHHHHHHHHHHHh--------hhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 567788888888888763 2234456778999999999999988765433 22447888865321
Q ss_pred ------hh----hcCc-hhHHHHHHHHH-Hhc-CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCC
Q 047690 398 ------MF----VGVG-PSRVRNLFQEA-RQC-APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTA 464 (811)
Q Consensus 398 ------~~----vG~~-~~~vr~lF~~A-~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~ 464 (811)
.+ .+.+ .......|..- ... .+-++++||+|.|+.+.. .++..+.. +.. ..+.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~------------~vLy~lFe-wp~-lp~s 288 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ------------TVLYTLFE-WPK-LPNS 288 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc------------ceeeeehh-ccc-CCcc
Confidence 11 1111 12233334332 222 367999999999974321 23333332 222 2467
Q ss_pred cEEEEecCCCCcccchhhcC----CCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHH-
Q 047690 465 GVVVIAGTNRPDILDKALLR----PGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIA- 539 (811)
Q Consensus 465 ~VIVIaaTN~pd~LDpALlR----pGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~- 539 (811)
++++|+.+|..|.-|..|-| .+.-...+.|++++.++..+||...+.........+..++..|+...|.|| |++
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRk 367 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRK 367 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHH
Confidence 89999999987766655543 122345789999999999999999998877666555566888888888887 554
Q ss_pred --HHHHHHHHHHHHcCC----------------CccCHHHHHHHHHHHhcCc
Q 047690 540 --NVCNEAALIAARGEN----------------SQVTMEHFEAAIDRVIGGL 573 (811)
Q Consensus 540 --~LvneAal~Aar~~~----------------~~It~ed~~~Al~rvi~g~ 573 (811)
.+|+.|..++....+ ..|..+++..++..+....
T Consensus 368 aLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~ 419 (529)
T KOG2227|consen 368 ALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSP 419 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccCh
Confidence 456767666655432 2244666666666655443
No 218
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=5.6e-07 Score=99.10 Aligned_cols=134 Identities=20% Similarity=0.309 Sum_probs=92.0
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCe--EEeech--hhhhh-------hh-------c------CchhHHHHH
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGESGVPF--LSISGS--DFMEM-------FV-------G------VGPSRVRNL 410 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpf--i~vs~s--~~~~~-------~v-------G------~~~~~vr~l 410 (811)
..++|.++||+||+|+||+++|.++|..+-+.- -.-.|. .++.. ++ | .+-+.+|++
T Consensus 22 ~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l 101 (319)
T PRK08769 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREI 101 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHH
Confidence 456789999999999999999999998653210 000010 00000 00 1 123466776
Q ss_pred HHHHHhcC----CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCC
Q 047690 411 FQEARQCA----PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPG 486 (811)
Q Consensus 411 F~~A~~~a----P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpG 486 (811)
.+.+.... --|++||++|.+. ....|.||..++. +..++++|..|+.++.|-|.|++
T Consensus 102 ~~~~~~~p~~g~~kV~iI~~ae~m~---------------~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS-- 162 (319)
T PRK08769 102 SQKLALTPQYGIAQVVIVDPADAIN---------------RAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS-- 162 (319)
T ss_pred HHHHhhCcccCCcEEEEeccHhhhC---------------HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--
Confidence 66554322 2499999999992 3466888888887 55677778888989999999999
Q ss_pred CcceeeeccCCCHHHHHHHHHH
Q 047690 487 RFDRQITIDKPDIKGRDQIFQV 508 (811)
Q Consensus 487 RFdr~I~v~~Pd~~eR~eIL~~ 508 (811)
|+ ..+.|+.|+.++-.+.|..
T Consensus 163 RC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 163 RC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred hh-eEeeCCCcCHHHHHHHHHH
Confidence 88 5889999998777666653
No 219
>PRK12377 putative replication protein; Provisional
Probab=98.66 E-value=1.6e-07 Score=100.00 Aligned_cols=126 Identities=22% Similarity=0.239 Sum_probs=75.9
Q ss_pred ccccccc----cchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhh
Q 047690 323 VYFRDVA----GCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDF 395 (811)
Q Consensus 323 v~f~dV~----G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~ 395 (811)
.+|++.. |+..++..+..++..+.. ...+++|+||||||||+||.|+|+++ +..++.++..++
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~~~~----------~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l 140 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADELMT----------GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDV 140 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHHHHh----------cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHH
Confidence 4566554 333455555555443221 13589999999999999999999976 678888998888
Q ss_pred hhhhhcCc--hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC
Q 047690 396 MEMFVGVG--PSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN 473 (811)
Q Consensus 396 ~~~~vG~~--~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN 473 (811)
+......- ......++... ....+|+|||+... ..++....++.+++..--. ...-+|.+||
T Consensus 141 ~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~----------~~s~~~~~~l~~ii~~R~~----~~~ptiitSN 204 (248)
T PRK12377 141 MSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ----------RETKNEQVVLNQIIDRRTA----SMRSVGMLTN 204 (248)
T ss_pred HHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC----------CCCHHHHHHHHHHHHHHHh----cCCCEEEEcC
Confidence 76532110 01112233332 34579999999665 1233445566666655322 1123466788
Q ss_pred C
Q 047690 474 R 474 (811)
Q Consensus 474 ~ 474 (811)
.
T Consensus 205 l 205 (248)
T PRK12377 205 L 205 (248)
T ss_pred C
Confidence 5
No 220
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=5.1e-07 Score=99.64 Aligned_cols=135 Identities=17% Similarity=0.198 Sum_probs=95.2
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC--eEEeech--------------hhh--hhhhc--CchhHHHHHHHHH
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGESGVP--FLSISGS--------------DFM--EMFVG--VGPSRVRNLFQEA 414 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp--fi~vs~s--------------~~~--~~~vG--~~~~~vr~lF~~A 414 (811)
..++|.++||+||+|+||+++|+++|+.+-+. .-.-.|. |+. ....+ .+-..+|++-+.+
T Consensus 20 ~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~ 99 (325)
T PRK06871 20 QGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKV 99 (325)
T ss_pred cCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHH
Confidence 34678899999999999999999999865331 0000111 110 00001 2345677766655
Q ss_pred Hhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcce
Q 047690 415 RQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDR 490 (811)
Q Consensus 415 ~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr 490 (811)
... .--|++||++|.+. ....|.||..++. +..++++|.+|+.++.|.|.+++ |+ .
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~---------------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~ 159 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLT---------------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-Q 159 (325)
T ss_pred hhccccCCceEEEEechhhhC---------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-e
Confidence 432 23599999999992 3466888888887 67788888899999999999998 88 5
Q ss_pred eeeccCCCHHHHHHHHHHH
Q 047690 491 QITIDKPDIKGRDQIFQVY 509 (811)
Q Consensus 491 ~I~v~~Pd~~eR~eIL~~~ 509 (811)
.+.|.+|+.++..+.|...
T Consensus 160 ~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EEeCCCCCHHHHHHHHHHH
Confidence 8899999988877777654
No 221
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.64 E-value=2.2e-07 Score=98.75 Aligned_cols=99 Identities=24% Similarity=0.306 Sum_probs=66.0
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhhhcC---chhHHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMFVGV---GPSRVRNLFQEARQCAPSIIFIDEIDAIGRA 433 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~vG~---~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~ 433 (811)
.+++|+|+||||||+|+.++|.++ +..++.++..++...+... .......++.... .+++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~-- 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT-- 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC--
Confidence 489999999999999999999987 7889999999987654321 1112233444432 46799999997751
Q ss_pred cCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCC
Q 047690 434 RGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNR 474 (811)
Q Consensus 434 r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~ 474 (811)
..+.....+.+++..--. ...-+|.+||.
T Consensus 176 --------~s~~~~~~l~~Ii~~Ry~----~~~~tiitSNl 204 (244)
T PRK07952 176 --------ESRYEKVIINQIVDRRSS----SKRPTGMLTNS 204 (244)
T ss_pred --------CCHHHHHHHHHHHHHHHh----CCCCEEEeCCC
Confidence 233444567777654221 12345667774
No 222
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.62 E-value=5.8e-07 Score=102.53 Aligned_cols=209 Identities=21% Similarity=0.321 Sum_probs=120.1
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhh----
Q 047690 327 DVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMF---- 399 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~---- 399 (811)
.++|.+.....+.+.+..+. .....++++|.+||||+++|+++.... +.||+.++|+.+.+..
T Consensus 140 ~lig~s~~~~~~~~~i~~~~----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 57777777777766555432 123568999999999999999998654 5799999998653221
Q ss_pred -hcCchh-------HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh--cCCC----CCc
Q 047690 400 -VGVGPS-------RVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD--GFGT----TAG 465 (811)
Q Consensus 400 -vG~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD--g~~~----~~~ 465 (811)
.|.... ....+|. ....++|||||||.|.. ..+..+..++..-. .... ..+
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ldei~~l~~------------~~q~~l~~~l~~~~~~~~~~~~~~~~~ 274 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFV---EADGGTLFLDEIGDISP------------MMQVRLLRAIQEREVQRVGSNQTISVD 274 (441)
T ss_pred hcCCCCCCcCCCCcCCCCcee---ECCCCEEEEeccccCCH------------HHHHHHHHHHccCcEEeCCCCceeeec
Confidence 111000 0001112 22468999999999832 22333333333211 0001 124
Q ss_pred EEEEecCCCCcccchhhcCCCCcce-------eeeccCCCHHHHHH----HHHHHHhhc----cCC-C-CCchhhhHHHh
Q 047690 466 VVVIAGTNRPDILDKALLRPGRFDR-------QITIDKPDIKGRDQ----IFQVYLKKI----KLD-H-EPSYYSQRLAA 528 (811)
Q Consensus 466 VIVIaaTN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----IL~~~l~~~----~l~-~-~~d~~l~~LA~ 528 (811)
+.+|++|+.+- ..+..+|+|.+ .+.+..|+..+|.+ +++.++... ... . -.+..++.|..
T Consensus 275 ~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 351 (441)
T PRK10365 275 VRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIH 351 (441)
T ss_pred eEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 67887777522 23334456643 47788888888765 444444432 111 0 11222344555
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 529 LTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 529 ~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
..---..++|.++++.|+..+ ....|+.+|+...+
T Consensus 352 ~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~~~ 386 (441)
T PRK10365 352 YDWPGNIRELENAVERAVVLL---TGEYISERELPLAI 386 (441)
T ss_pred CCCCCHHHHHHHHHHHHHHhC---CCCccchHhCchhh
Confidence 443335678888888776543 45678888876543
No 223
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.61 E-value=7e-07 Score=96.34 Aligned_cols=188 Identities=21% Similarity=0.273 Sum_probs=120.1
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhh-
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF- 399 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~- 399 (811)
..-.+.||+++++....+.++.+. .++| +.|+|||||||||....+.|..+..|.-.- +-..+.-
T Consensus 36 rP~~l~dv~~~~ei~st~~~~~~~-----------~~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~--~m~lelna 101 (360)
T KOG0990|consen 36 RPPFLGIVIKQEPIWSTENRYSGM-----------PGLP-HLLFYGPPGTGKTSTILANARDFYSPHPTT--SMLLELNA 101 (360)
T ss_pred CCchhhhHhcCCchhhHHHHhccC-----------CCCC-cccccCCCCCCCCCchhhhhhhhcCCCCch--hHHHHhhc
Confidence 456789999999998888887442 2233 789999999999999999999886651111 1111111
Q ss_pred ---hcCchh-HHHHHHHHHHh-------cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEE
Q 047690 400 ---VGVGPS-RVRNLFQEARQ-------CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVV 468 (811)
Q Consensus 400 ---vG~~~~-~vr~lF~~A~~-------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIV 468 (811)
.|-..- .--..|..++. ..+..|++||.|++... ..|+|-..+..+..+..++
T Consensus 102 Sd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~---------------AQnALRRviek~t~n~rF~- 165 (360)
T KOG0990|consen 102 SDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD---------------AQNALRRVIEKYTANTRFA- 165 (360)
T ss_pred cCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHH---------------HHHHHHHHHHHhccceEEE-
Confidence 111111 12234555553 25779999999999532 3344445666655554444
Q ss_pred EecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHH
Q 047690 469 IAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAAL 547 (811)
Q Consensus 469 IaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal 547 (811)
..+|.+..+.|++++ ||. .+.+..-+...-...+.+++.........+.. ..+++.. -.|+...+|....
T Consensus 166 -ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~-~a~~r~s----~gDmr~a~n~Lqs 235 (360)
T KOG0990|consen 166 -TISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGY-SALGRLS----VGDMRVALNYLQS 235 (360)
T ss_pred -EeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHH-HHHHHHh----HHHHHHHHHHHHH
Confidence 557999999999998 774 56666677777777888888765555544432 2233333 3477777765433
No 224
>PRK08181 transposase; Validated
Probab=98.58 E-value=3.7e-07 Score=98.30 Aligned_cols=100 Identities=20% Similarity=0.313 Sum_probs=65.1
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhhhcC-chhHHHHHHHHHHhcCCeEEEEcCcchhhhhc
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMFVGV-GPSRVRNLFQEARQCAPSIIFIDEIDAIGRAR 434 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 434 (811)
..+++|+||||||||+||.|++.++ +..+++++..+++..+... ........+.... .+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~--- 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVT--- 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEecccccc---
Confidence 3579999999999999999999754 7888999998888764321 1122333444332 45799999998762
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCC
Q 047690 435 GRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRP 475 (811)
Q Consensus 435 ~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~p 475 (811)
.++.....+.+++....+ +. -+|.|||.+
T Consensus 181 -------~~~~~~~~Lf~lin~R~~---~~--s~IiTSN~~ 209 (269)
T PRK08181 181 -------KDQAETSVLFELISARYE---RR--SILITANQP 209 (269)
T ss_pred -------CCHHHHHHHHHHHHHHHh---CC--CEEEEcCCC
Confidence 223334556666654332 22 255567753
No 225
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.57 E-value=3.6e-08 Score=94.25 Aligned_cols=111 Identities=32% Similarity=0.366 Sum_probs=56.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeech-hhh-hhhhcCchhHH-HHHHHHHHh-cCCeEEEEcCcchhhhhcCC
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGS-DFM-EMFVGVGPSRV-RNLFQEARQ-CAPSIIFIDEIDAIGRARGR 436 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s-~~~-~~~vG~~~~~v-r~lF~~A~~-~aP~ILfIDEIDaL~~~r~~ 436 (811)
.+||.|+||+|||++|+++|+.++..|..|.+. ++. +...|..--.. ...|...+. --..|+++|||...-
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrap----- 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAP----- 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCC-----
Confidence 489999999999999999999999999988774 332 11111100000 000000000 002499999996652
Q ss_pred CCCCCCchHHHHHHHHHHHhhhcC---------CCCCcEEEEecCCCCc-----ccchhhcCCCCc
Q 047690 437 GGFSGANDERESTLNQLLVEMDGF---------GTTAGVVVIAGTNRPD-----ILDKALLRPGRF 488 (811)
Q Consensus 437 ~~~~~~~~e~~~tLnqLL~emDg~---------~~~~~VIVIaaTN~pd-----~LDpALlRpGRF 488 (811)
-++...||+.|..- .-...++||||-|..+ .|+.+++. ||
T Consensus 76 ----------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 76 ----------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ----------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ----------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 34555566555432 2234689999999876 58888888 77
No 226
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=5e-07 Score=100.23 Aligned_cols=134 Identities=14% Similarity=0.158 Sum_probs=94.3
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC--eEEeech--------------hhhhhh-----hcCchhHHHHHHHH
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGESGVP--FLSISGS--------------DFMEMF-----VGVGPSRVRNLFQE 413 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp--fi~vs~s--------------~~~~~~-----vG~~~~~vr~lF~~ 413 (811)
..++|.++||+||+|+||+++|+++|..+-+. --.-.|. |+.... ...+-+.+|++-+.
T Consensus 20 ~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~ 99 (334)
T PRK07993 20 AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEK 99 (334)
T ss_pred cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHH
Confidence 45778999999999999999999999865321 0000111 110000 01234567776665
Q ss_pred HHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcc
Q 047690 414 ARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFD 489 (811)
Q Consensus 414 A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFd 489 (811)
+... .--|++||++|.+. ...-|.||..++. +..++++|..|+.++.|.|.+++ |+.
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~---------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq 160 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLT---------------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR 160 (334)
T ss_pred HhhccccCCceEEEEcchHhhC---------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc
Confidence 5432 23599999999992 3467888888887 67788999999999999999999 885
Q ss_pred eeeeccCCCHHHHHHHHHH
Q 047690 490 RQITIDKPDIKGRDQIFQV 508 (811)
Q Consensus 490 r~I~v~~Pd~~eR~eIL~~ 508 (811)
.+.++.|+.++..+.|..
T Consensus 161 -~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 161 -LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred -cccCCCCCHHHHHHHHHH
Confidence 689999998777766643
No 227
>PRK06526 transposase; Provisional
Probab=98.52 E-value=2.4e-07 Score=98.98 Aligned_cols=100 Identities=23% Similarity=0.360 Sum_probs=64.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhhhcC-chhHHHHHHHHHHhcCCeEEEEcCcchhhhhc
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMFVGV-GPSRVRNLFQEARQCAPSIIFIDEIDAIGRAR 434 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 434 (811)
+.+++|+||||||||+||.+|+.++ |..++.++..++++..... ....+...+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~--- 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP--- 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC---
Confidence 4689999999999999999998875 7778888888877654211 111222223222 346799999998762
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCC
Q 047690 435 GRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRP 475 (811)
Q Consensus 435 ~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~p 475 (811)
........+.+++..... +. .+|.+||.+
T Consensus 173 -------~~~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 173 -------FEPEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred -------CCHHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 233344556666654332 22 256677754
No 228
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=9.9e-07 Score=97.14 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=93.5
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC-----------------------eEEeechhhhhhhhcCchhHHHHHH
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGESGVP-----------------------FLSISGSDFMEMFVGVGPSRVRNLF 411 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp-----------------------fi~vs~s~~~~~~vG~~~~~vr~lF 411 (811)
..++|.++||+||.|+||+++|+++|..+-+. |+.+.... .. ...+-+.+|.+-
T Consensus 21 ~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~--~~I~vdqiR~l~ 97 (319)
T PRK06090 21 AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EG--KSITVEQIRQCN 97 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CC--CcCCHHHHHHHH
Confidence 45678999999999999999999999865221 22221110 00 001234667665
Q ss_pred HHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCC
Q 047690 412 QEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGR 487 (811)
Q Consensus 412 ~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGR 487 (811)
+.+... .--|++||++|.+. ...-|.||..++. +..++++|..|+.++.|-|.+++ |
T Consensus 98 ~~~~~~~~~~~~kV~iI~~ae~m~---------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--R 158 (319)
T PRK06090 98 RLAQESSQLNGYRLFVIEPADAMN---------------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--R 158 (319)
T ss_pred HHHhhCcccCCceEEEecchhhhC---------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--c
Confidence 554332 23599999999992 3466888888887 66778888899999999999999 8
Q ss_pred cceeeeccCCCHHHHHHHHHH
Q 047690 488 FDRQITIDKPDIKGRDQIFQV 508 (811)
Q Consensus 488 Fdr~I~v~~Pd~~eR~eIL~~ 508 (811)
+ ..+.|+.|+.++..+.|..
T Consensus 159 C-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 159 C-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred c-eeEeCCCCCHHHHHHHHHH
Confidence 8 5889999998877776643
No 229
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.50 E-value=1e-06 Score=95.99 Aligned_cols=216 Identities=21% Similarity=0.297 Sum_probs=130.1
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME 397 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~ 397 (811)
....|+.+++.+...+.+.+....+. - ....+||.|..||||-++||+..... ..||+.+||..+-+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~A------m----lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLA------M----LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhh------c----cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 45679999999988888777655322 1 22357999999999999999997755 78999999987653
Q ss_pred h-----hhcCch--hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhh--hcCCC----CC
Q 047690 398 M-----FVGVGP--SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEM--DGFGT----TA 464 (811)
Q Consensus 398 ~-----~vG~~~--~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~em--Dg~~~----~~ 464 (811)
. ..|..+ +.-..+|++|.. ..+|+|||-.+ +...+.-+..||+.- ..... .-
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm------------Sp~lQaKLLRFL~DGtFRRVGee~Ev~v 333 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM------------SPRLQAKLLRFLNDGTFRRVGEDHEVHV 333 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc------------CHHHHHHHHHHhcCCceeecCCcceEEE
Confidence 3 223322 445667888755 69999999776 344455555555431 01111 12
Q ss_pred cEEEEecCCCCc--ccchhhcCCCCcc--eeeeccCCCHHHHHHH----HHH----HHhhccCCCC--CchhhhHHHhhC
Q 047690 465 GVVVIAGTNRPD--ILDKALLRPGRFD--RQITIDKPDIKGRDQI----FQV----YLKKIKLDHE--PSYYSQRLAALT 530 (811)
Q Consensus 465 ~VIVIaaTN~pd--~LDpALlRpGRFd--r~I~v~~Pd~~eR~eI----L~~----~l~~~~l~~~--~d~~l~~LA~~t 530 (811)
+|-||+||..+= .++..-.|..-|. .++.+..|...+|.+- .+. +....+.... ....+..+.+.-
T Consensus 334 dVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~ 413 (511)
T COG3283 334 DVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYA 413 (511)
T ss_pred EEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcC
Confidence 589999998631 2222222222222 2577888888887652 222 3333333221 111233444433
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 047690 531 PGFAGADIANVCNEAALIAARGENSQVTMEHFEA 564 (811)
Q Consensus 531 ~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~ 564 (811)
---+.++|.|++-+|+... +...++.+|+.-
T Consensus 414 WpGNVRqL~N~iyRA~s~~---Eg~~l~i~~i~L 444 (511)
T COG3283 414 WPGNVRQLKNAIYRALTLL---EGYELRIEDILL 444 (511)
T ss_pred CCccHHHHHHHHHHHHHHh---ccCccchhhccc
Confidence 3335678888887776554 445566666543
No 230
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.50 E-value=4.3e-07 Score=99.56 Aligned_cols=71 Identities=25% Similarity=0.377 Sum_probs=51.2
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhhhcC-chhHHHHHHHHHHhcCCeEEEEcCcchh
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMFVGV-GPSRVRNLFQEARQCAPSIIFIDEIDAI 430 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL 430 (811)
..+|++|+||+|||||+||.|+|+++ |.++..++.++|+..+... ....+...+...+ ...+|+||||.+-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 35799999999999999999999987 7888889888886553221 1112333443332 3469999999653
No 231
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.48 E-value=7.8e-07 Score=105.13 Aligned_cols=188 Identities=16% Similarity=0.130 Sum_probs=123.8
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcC--CCeEEeechhhhhhhhcCch--hHH--------HHHHHHHHhcCCeEEEEcCc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESG--VPFLSISGSDFMEMFVGVGP--SRV--------RNLFQEARQCAPSIIFIDEI 427 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~g--vpfi~vs~s~~~~~~vG~~~--~~v--------r~lF~~A~~~aP~ILfIDEI 427 (811)
.||||.|++||+||+++++++..+. .||..+..+--.+..+|... ..+ ..++..| ...||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecCc
Confidence 5899999999999999999999874 58877655444444455431 111 1111111 2369999999
Q ss_pred chhhhhcCCCCCCCCchHHHHHHHHHHHhhhcC-----------CCCCcEEEEecCCCC---cccchhhcCCCCcceeee
Q 047690 428 DAIGRARGRGGFSGANDERESTLNQLLVEMDGF-----------GTTAGVVVIAGTNRP---DILDKALLRPGRFDRQIT 493 (811)
Q Consensus 428 DaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~-----------~~~~~VIVIaaTN~p---d~LDpALlRpGRFdr~I~ 493 (811)
..+ ...++..|++-|+.- .-...++||++-|.. ..|.++++. ||+.++.
T Consensus 103 n~~---------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~ 165 (584)
T PRK13406 103 ERL---------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLD 165 (584)
T ss_pred ccC---------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEE
Confidence 776 135777788777642 112468888874432 348899999 9999999
Q ss_pred ccCCCHHHHH-------HHHHHH--HhhccCCCCCchhhhHHHhh--CCCC-cHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 047690 494 IDKPDIKGRD-------QIFQVY--LKKIKLDHEPSYYSQRLAAL--TPGF-AGADIANVCNEAALIAARGENSQVTMEH 561 (811)
Q Consensus 494 v~~Pd~~eR~-------eIL~~~--l~~~~l~~~~d~~l~~LA~~--t~Gf-SgaDL~~LvneAal~Aar~~~~~It~ed 561 (811)
+..|+..+.. .|.... +.+..+ + +..++.++.. .-|. |.+--..+++-|..+|+.+++..|+.+|
T Consensus 166 v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v--~-~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~d 242 (584)
T PRK13406 166 LDGLALRDAREIPIDADDIAAARARLPAVGP--P-PEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEED 242 (584)
T ss_pred cCCCChHHhcccCCCHHHHHHHHHHHccCCC--C-HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 9988765422 233222 222221 1 1122333222 2354 6677778888888899999999999999
Q ss_pred HHHHHHHHh
Q 047690 562 FEAAIDRVI 570 (811)
Q Consensus 562 ~~~Al~rvi 570 (811)
+.+|+.-++
T Consensus 243 v~~Aa~lvL 251 (584)
T PRK13406 243 LALAARLVL 251 (584)
T ss_pred HHHHHHHHH
Confidence 999998875
No 232
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=1.2e-06 Score=96.87 Aligned_cols=133 Identities=19% Similarity=0.240 Sum_probs=89.2
Q ss_pred CCCCCcEEEEcCCCCCHHHHHHHHHHhcCC-------------------------CeEEeechhh---hhh-hhcCchhH
Q 047690 356 AKIPKGALLVGPPGTGKTLLAKATAGESGV-------------------------PFLSISGSDF---MEM-FVGVGPSR 406 (811)
Q Consensus 356 ~~~pkGvLL~GPPGTGKT~LAkAlA~e~gv-------------------------pfi~vs~s~~---~~~-~vG~~~~~ 406 (811)
.++|.++||+||+|+|||++|+++|+.+.+ .|+.++...- ... ....+-+.
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHH
Confidence 378999999999999999999999997532 1222322100 000 00013456
Q ss_pred HHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhh
Q 047690 407 VRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKAL 482 (811)
Q Consensus 407 vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpAL 482 (811)
+|++.+.+... ..-|++||++|.+ +. ...+.++..++... .++.+|.+|+.++.+.+.+
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L------------d~---~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti 160 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM------------NL---QAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTI 160 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC------------CH---HHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHH
Confidence 78877766542 2359999999988 22 34455666666542 3466777888889999999
Q ss_pred cCCCCcceeeeccCCCHHHHHHHHHH
Q 047690 483 LRPGRFDRQITIDKPDIKGRDQIFQV 508 (811)
Q Consensus 483 lRpGRFdr~I~v~~Pd~~eR~eIL~~ 508 (811)
.+ |+ ..+.|+.|+.++..+.|..
T Consensus 161 ~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 161 KS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 88 77 6888999998877766643
No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.45 E-value=7.8e-07 Score=98.43 Aligned_cols=69 Identities=20% Similarity=0.415 Sum_probs=49.5
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhhhcC---chhHHHHHHHHHHhcCCeEEEEcCcchh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMFVGV---GPSRVRNLFQEARQCAPSIIFIDEIDAI 430 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~vG~---~~~~vr~lF~~A~~~aP~ILfIDEIDaL 430 (811)
.+++|+||+|||||+||.|+|+++ +..+++++..++...+... ........+.... ...+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 689999999999999999999986 7889999999987654221 1111111233322 3469999999665
No 234
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.1e-06 Score=106.54 Aligned_cols=128 Identities=28% Similarity=0.340 Sum_probs=89.4
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh----
Q 047690 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM---- 398 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~---- 398 (811)
+.|+|+++|...+.+.|..-+..-. .. +++-.+||.||.|+|||-||+|+|..+ .-.++.+++++|.+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~-~~---~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLK-DP---NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccC-CC---CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 4589999999999998875332100 00 345568999999999999999999976 557999999987652
Q ss_pred -----hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCC---------CC
Q 047690 399 -----FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGT---------TA 464 (811)
Q Consensus 399 -----~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~---------~~ 464 (811)
|+|. ...-.+.+..++..-|||+|||||.- +. .+++.|++.+|...- -.
T Consensus 638 gsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkA------------h~---~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 638 GSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKA------------HP---DVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred CCCcccccc--hhHHHHHHHHhcCCceEEEEechhhc------------CH---HHHHHHHHHHhcCccccCCCcEeecc
Confidence 3333 23345666666666799999999875 22 345555555554321 23
Q ss_pred cEEEEecCCC
Q 047690 465 GVVVIAGTNR 474 (811)
Q Consensus 465 ~VIVIaaTN~ 474 (811)
++|||+|+|.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 6899999885
No 235
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.42 E-value=1.1e-06 Score=94.12 Aligned_cols=87 Identities=26% Similarity=0.442 Sum_probs=57.1
Q ss_pred hHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhhhcCch-hHH
Q 047690 332 DEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMFVGVGP-SRV 407 (811)
Q Consensus 332 eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~vG~~~-~~v 407 (811)
..+...+..++.++. -+.+++|+||||||||+||-||++++ |.+++.++.++++......-. ...
T Consensus 89 ~~~l~~~~~~~~~~~-----------~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~ 157 (254)
T COG1484 89 KKALEDLASLVEFFE-----------RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRL 157 (254)
T ss_pred HHHHHHHHHHHHHhc-----------cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCch
Confidence 344555555554443 35689999999999999999999976 889999999998765322111 111
Q ss_pred HHHHHHHHhcCCeEEEEcCcchh
Q 047690 408 RNLFQEARQCAPSIIFIDEIDAI 430 (811)
Q Consensus 408 r~lF~~A~~~aP~ILfIDEIDaL 430 (811)
..-+... -....+|+||||-..
T Consensus 158 ~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 158 EEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred HHHHHHH-hhcCCEEEEecccCc
Confidence 1111111 123469999999654
No 236
>PRK09183 transposase/IS protein; Provisional
Probab=98.41 E-value=1.1e-06 Score=94.32 Aligned_cols=71 Identities=30% Similarity=0.460 Sum_probs=50.6
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhhhc-CchhHHHHHHHHHHhcCCeEEEEcCcchh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMFVG-VGPSRVRNLFQEARQCAPSIIFIDEIDAI 430 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~vG-~~~~~vr~lF~~A~~~aP~ILfIDEIDaL 430 (811)
..+++|+||||||||+||.+++.++ |..+.++++.++...+.. .....+...|... ...+++++|||++.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 4579999999999999999997764 778888888887644321 1112344455443 235679999999765
No 237
>PF13173 AAA_14: AAA domain
Probab=98.41 E-value=1.7e-06 Score=82.56 Aligned_cols=121 Identities=26% Similarity=0.262 Sum_probs=69.7
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcC--CCeEEeechhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCC
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESG--VPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRG 437 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~g--vpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~ 437 (811)
+-++|+||+|||||++++.++.... ..++++++.+......... . +.+.+.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~------- 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYL------- 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhh-------
Confidence 4589999999999999999998876 7788888877644211110 0 223333222225689999999887
Q ss_pred CCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc-chhhcCCCCcceeeeccCCCHHH
Q 047690 438 GFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL-DKALLRPGRFDRQITIDKPDIKG 501 (811)
Q Consensus 438 ~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L-DpALlRpGRFdr~I~v~~Pd~~e 501 (811)
+.....+..+.... ...-+|+.+++..... +-+-.-+||.. .+++.+.+..|
T Consensus 74 ------~~~~~~lk~l~d~~-----~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 74 ------PDWEDALKFLVDNG-----PNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred ------ccHHHHHHHHHHhc-----cCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 12344555554321 1222333333322221 11112245774 67777777654
No 238
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.40 E-value=1.2e-06 Score=89.90 Aligned_cols=164 Identities=23% Similarity=0.328 Sum_probs=84.2
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCC---CeEEeec-h--------hh-------------hh-hhh------------
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGV---PFLSISG-S--------DF-------------ME-MFV------------ 400 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gv---pfi~vs~-s--------~~-------------~~-~~v------------ 400 (811)
...++|+||.|+|||+|++.+.....- ..+++.+ . .+ .. ...
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 356899999999999999999998732 1222211 0 11 00 000
Q ss_pred cCchhHHHHHHHHHHhcC-CeEEEEcCcchhh-hhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcE-EEEecCCCCcc
Q 047690 401 GVGPSRVRNLFQEARQCA-PSIIFIDEIDAIG-RARGRGGFSGANDERESTLNQLLVEMDGFGTTAGV-VVIAGTNRPDI 477 (811)
Q Consensus 401 G~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~-~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~V-IVIaaTN~pd~ 477 (811)
......+..++....+.. ..||+|||+|.+. ... +....+..|...++......++ +|+++++ ...
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~-~~~ 168 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE----------EDKDFLKSLRSLLDSLLSQQNVSIVITGSS-DSL 168 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT----------TTHHHHHHHHHHHHH----TTEEEEEEESS-HHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc----------chHHHHHHHHHHHhhccccCCceEEEECCc-hHH
Confidence 012344566666665543 4899999999995 111 1123444444444443333444 3444443 211
Q ss_pred c------chhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCC-CCchhhhHHHhhCCCCcHHHH
Q 047690 478 L------DKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDH-EPSYYSQRLAALTPGFAGADI 538 (811)
Q Consensus 478 L------DpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~-~~d~~l~~LA~~t~GfSgaDL 538 (811)
. ...+. +|+.. +.+++-+.++..++++..++.. ... ..+..++.+...|.|. |+-|
T Consensus 169 ~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~-P~~l 231 (234)
T PF01637_consen 169 MEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGN-PRYL 231 (234)
T ss_dssp HHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT--HHHH
T ss_pred HHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCC-HHHH
Confidence 1 11222 37766 9999999999999999988765 322 2334457777777764 4333
No 239
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.38 E-value=4.2e-07 Score=92.10 Aligned_cols=70 Identities=30% Similarity=0.506 Sum_probs=48.8
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhhhcC-chhHHHHHHHHHHhcCCeEEEEcCcch
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMFVGV-GPSRVRNLFQEARQCAPSIIFIDEIDA 429 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDa 429 (811)
-..|++|+||||||||+||.|++.++ +.++..++.+++++..... .......++.... .+.+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 35689999999999999999999876 8899999999998764332 1122334444443 346999999843
No 240
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.34 E-value=9.8e-06 Score=94.72 Aligned_cols=204 Identities=18% Similarity=0.226 Sum_probs=112.0
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEe-echhhh----
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSI-SGSDFM---- 396 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~v-s~s~~~---- 396 (811)
+.+.+||+-...-.++++.++..... +....+-+||+||||||||+++++||++++..+..- +...+.
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~ 87 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDN 87 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccccc
Confidence 46788999998777777777764111 112233567899999999999999999998766642 222211
Q ss_pred --hhhhcCc------hhH---HHHH-HHHHHh-----------cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHH
Q 047690 397 --EMFVGVG------PSR---VRNL-FQEARQ-----------CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQL 453 (811)
Q Consensus 397 --~~~vG~~------~~~---vr~l-F~~A~~-----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqL 453 (811)
..|.+.. ..+ ...+ +..++. ..+.||+|||+-.+... ........|.++
T Consensus 88 ~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~--------~~~~f~~~L~~~ 159 (519)
T PF03215_consen 88 QEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR--------DTSRFREALRQY 159 (519)
T ss_pred ccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch--------hHHHHHHHHHHH
Confidence 0111110 011 1111 111111 23579999999765321 112333444444
Q ss_pred HHhhhcCCCCC-cEEEEec-C------CCC--------cccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhc----
Q 047690 454 LVEMDGFGTTA-GVVVIAG-T------NRP--------DILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKI---- 513 (811)
Q Consensus 454 L~emDg~~~~~-~VIVIaa-T------N~p--------d~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~---- 513 (811)
+.. ... .+|+|.+ | |.. ..+++.++...++ .+|.|.+-...-....|+..+...
T Consensus 160 l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 160 LRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred HHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 432 223 6666666 1 111 1356666653344 467777666655555555554432
Q ss_pred -cCCCCC--chhhhHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 047690 514 -KLDHEP--SYYSQRLAALTPGFAGADIANVCNEAALIAA 550 (811)
Q Consensus 514 -~l~~~~--d~~l~~LA~~t~GfSgaDL~~LvneAal~Aa 550 (811)
+....+ ...++.|+..+. +||+.+++.-...+.
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred cCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 111111 222566776655 499999997766665
No 241
>PRK06921 hypothetical protein; Provisional
Probab=98.32 E-value=1.6e-06 Score=93.35 Aligned_cols=68 Identities=26% Similarity=0.340 Sum_probs=46.7
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeechhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcch
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES----GVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDA 429 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDa 429 (811)
..+++|+||||||||+|+.|+|+++ +..+++++..+++..+... .......+... ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 4689999999999999999999975 6778888887765543211 01112222222 2357999999944
No 242
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.32 E-value=3.2e-06 Score=79.71 Aligned_cols=98 Identities=21% Similarity=0.291 Sum_probs=59.5
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc--------CCCeEEeechhhhh------h----hh----c-CchhHHHHHHHHH-
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES--------GVPFLSISGSDFME------M----FV----G-VGPSRVRNLFQEA- 414 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~--------gvpfi~vs~s~~~~------~----~v----G-~~~~~vr~lF~~A- 414 (811)
.+.++++||||+|||++++.++... ..+++.+++..... . +. . .....+.+.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3568999999999999999999987 78888888754431 1 10 1 1233333444443
Q ss_pred HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecC
Q 047690 415 RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGT 472 (811)
Q Consensus 415 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaT 472 (811)
......+|+|||+|.+. ....++.|...++ ...-.+++++..
T Consensus 84 ~~~~~~~lviDe~~~l~--------------~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF--------------SDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH--------------THHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC--------------CHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 33334599999999983 1345666655555 233355666554
No 243
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.31 E-value=1.2e-05 Score=85.43 Aligned_cols=177 Identities=20% Similarity=0.266 Sum_probs=118.4
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEe---------
Q 047690 323 VYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSI--------- 390 (811)
Q Consensus 323 v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~v--------- 390 (811)
-+|+.+.+.++....|..+.. +.. .| ++|+|||+|+||-|.+.++-+++ |++=..+
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~----~~d-------~P-Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS 77 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSS----TGD-------FP-HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPS 77 (351)
T ss_pred chhhhcccHHHHHHHHHHhcc----cCC-------CC-eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCC
Confidence 367788889988888887654 111 12 47999999999999999998876 2221111
Q ss_pred ---------echhhhhh---hhcC-chhHHHHHHHHHHhcCC---------eEEEEcCcchhhhhcCCCCCCCCchHHHH
Q 047690 391 ---------SGSDFMEM---FVGV-GPSRVRNLFQEARQCAP---------SIIFIDEIDAIGRARGRGGFSGANDERES 448 (811)
Q Consensus 391 ---------s~s~~~~~---~vG~-~~~~vr~lF~~A~~~aP---------~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 448 (811)
+....++. -+|. ..--+.++.++..+.+| -+|+|-|.|.|.+.
T Consensus 78 ~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~d--------------- 142 (351)
T KOG2035|consen 78 KKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRD--------------- 142 (351)
T ss_pred CceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHH---------------
Confidence 11111111 0121 12235666665544432 49999999999432
Q ss_pred HHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHh
Q 047690 449 TLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAA 528 (811)
Q Consensus 449 tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~ 528 (811)
....|-..|+.+..+ +-+|..+|....+-+++++ |+ ..|.++.|+.++...++...+.+.++....+. +.++|+
T Consensus 143 AQ~aLRRTMEkYs~~--~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~-l~rIa~ 216 (351)
T KOG2035|consen 143 AQHALRRTMEKYSSN--CRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKEL-LKRIAE 216 (351)
T ss_pred HHHHHHHHHHHHhcC--ceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHH-HHHHHH
Confidence 223444556665444 4455567877888889988 66 57999999999999999999999888776443 678888
Q ss_pred hCCC
Q 047690 529 LTPG 532 (811)
Q Consensus 529 ~t~G 532 (811)
.+.|
T Consensus 217 kS~~ 220 (351)
T KOG2035|consen 217 KSNR 220 (351)
T ss_pred Hhcc
Confidence 7765
No 244
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.29 E-value=1.2e-06 Score=101.80 Aligned_cols=207 Identities=24% Similarity=0.373 Sum_probs=123.7
Q ss_pred ccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc--CCCeEEeechhhhhh-----hhc
Q 047690 329 AGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES--GVPFLSISGSDFMEM-----FVG 401 (811)
Q Consensus 329 ~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~--gvpfi~vs~s~~~~~-----~vG 401 (811)
++.+...+.+...++.+... .-.+||.|.|||||-.|||++.... .-||+.++|.-+-+. ++|
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~----------~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFG 385 (606)
T COG3284 316 PLLDPSRATLLRKAERVAAT----------DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFG 385 (606)
T ss_pred cccCHHHHHHHHHHHHHhhc----------CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhc
Confidence 35555555555555443332 2368999999999999999998755 679999999765432 333
Q ss_pred Cchh--------HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHh-----hhcCCCCCcEEE
Q 047690 402 VGPS--------RVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVE-----MDGFGTTAGVVV 468 (811)
Q Consensus 402 ~~~~--------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~e-----mDg~~~~~~VIV 468 (811)
..+. -.+..+++|- -..+|+|||..| .-..+..|.+.|++ +.+-...-+|-|
T Consensus 386 y~~GafTga~~kG~~g~~~~A~---gGtlFldeIgd~------------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirv 450 (606)
T COG3284 386 YVAGAFTGARRKGYKGKLEQAD---GGTLFLDEIGDM------------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRV 450 (606)
T ss_pred cCccccccchhccccccceecC---CCccHHHHhhhc------------hHHHHHHHHHHHhhCceeccCCcceeEEEEE
Confidence 3222 2223333332 259999999776 23344455555555 222222236889
Q ss_pred EecCCCCcccchhhcCCCCccee-------eeccCCCHHHHHH---HHHHHHhhcc---CCCCCchhhhHHHhhCCCCcH
Q 047690 469 IAGTNRPDILDKALLRPGRFDRQ-------ITIDKPDIKGRDQ---IFQVYLKKIK---LDHEPSYYSQRLAALTPGFAG 535 (811)
Q Consensus 469 IaaTN~pd~LDpALlRpGRFdr~-------I~v~~Pd~~eR~e---IL~~~l~~~~---l~~~~d~~l~~LA~~t~GfSg 535 (811)
|+||+++ | ..|.+.|||-+- +.|.+|...+|.+ .|..++.+.. +..+.+....-++..=+| +-
T Consensus 451 i~ath~d--l-~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Ni 526 (606)
T COG3284 451 IAATHRD--L-AQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NI 526 (606)
T ss_pred EeccCcC--H-HHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cH
Confidence 9999973 2 356777888643 5677888888765 4444444322 222333322222333344 56
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 047690 536 ADIANVCNEAALIAARGENSQVTMEHFEAAID 567 (811)
Q Consensus 536 aDL~~LvneAal~Aar~~~~~It~ed~~~Al~ 567 (811)
++|.+++..++..+ +...|...|+...+-
T Consensus 527 rel~~v~~~~~~l~---~~g~~~~~dlp~~l~ 555 (606)
T COG3284 527 RELDNVIERLAALS---DGGRIRVSDLPPELL 555 (606)
T ss_pred HHHHHHHHHHHHcC---CCCeeEcccCCHHHH
Confidence 78888888766554 555566666666554
No 245
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.27 E-value=7.5e-06 Score=88.48 Aligned_cols=137 Identities=24% Similarity=0.378 Sum_probs=76.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCC-C--eEEeechhhhhhhhcCchhHHHHHHHHH----H-------hcCCeEEEEc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGV-P--FLSISGSDFMEMFVGVGPSRVRNLFQEA----R-------QCAPSIIFID 425 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gv-p--fi~vs~s~~~~~~vG~~~~~vr~lF~~A----~-------~~aP~ILfID 425 (811)
+.+||+||+|||||++++.+-.+..- . ...++++.... ...++.+.+.. + ....+|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 47999999999999999988776532 2 22344433211 12222222111 0 1124699999
Q ss_pred CcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCC--------CcEEEEecCCCCc---ccchhhcCCCCcceeeec
Q 047690 426 EIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTT--------AGVVVIAGTNRPD---ILDKALLRPGRFDRQITI 494 (811)
Q Consensus 426 EIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~--------~~VIVIaaTN~pd---~LDpALlRpGRFdr~I~v 494 (811)
|+..-.... .+.. .....|.|++.. .|+... .++.+|||+|.+. .+++.++| .| ..+.+
T Consensus 108 DlN~p~~d~-----ygtq-~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~ 177 (272)
T PF12775_consen 108 DLNMPQPDK-----YGTQ-PPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNI 177 (272)
T ss_dssp TTT-S---T-----TS---HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE-
T ss_pred ccCCCCCCC-----CCCc-CHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEe
Confidence 997653221 1111 123344444432 233221 3578888887533 47888888 67 58999
Q ss_pred cCCCHHHHHHHHHHHHhh
Q 047690 495 DKPDIKGRDQIFQVYLKK 512 (811)
Q Consensus 495 ~~Pd~~eR~eIL~~~l~~ 512 (811)
+.|+.+....|+..++..
T Consensus 178 ~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ---TCCHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHhh
Confidence 999999999988887764
No 246
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.25 E-value=2.6e-05 Score=82.34 Aligned_cols=185 Identities=18% Similarity=0.165 Sum_probs=114.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCC---CeEEeec-----hhhhhhhhcCc------------hhHHHHHHHHHH-hcCCe
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGV---PFLSISG-----SDFMEMFVGVG------------PSRVRNLFQEAR-QCAPS 420 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gv---pfi~vs~-----s~~~~~~vG~~------------~~~vr~lF~~A~-~~aP~ 420 (811)
+.++|+-|||||+++||+....+- -.++++. +.+.+.++.+. +..-+.+.+..+ ...|.
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 578999999999999987766532 2233332 23333222111 122233333333 34578
Q ss_pred EEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCC------CCcceeeec
Q 047690 421 IIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRP------GRFDRQITI 494 (811)
Q Consensus 421 ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRp------GRFdr~I~v 494 (811)
++++||.+.+.. ..-..+.-|...-++....-.|+.|+-.. |.+.+++| -|++-.|++
T Consensus 134 ~l~vdEah~L~~------------~~le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~l 197 (269)
T COG3267 134 VLMVDEAHDLND------------SALEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIEL 197 (269)
T ss_pred EEeehhHhhhCh------------hHHHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEec
Confidence 999999999832 11223333332223333334566666443 22222211 178777888
Q ss_pred cCCCHHHHHHHHHHHHhhccCCCCC--chhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 047690 495 DKPDIKGRDQIFQVYLKKIKLDHEP--SYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFE 563 (811)
Q Consensus 495 ~~Pd~~eR~eIL~~~l~~~~l~~~~--d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~ 563 (811)
++.+.++-...++++++........ +..+..+...+.| .++-+.++|..|...|...+...|+...+.
T Consensus 198 ~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 198 PPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 9999998999999999887544432 3335667788887 688999999999888888888888876654
No 247
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.22 E-value=1.9e-05 Score=92.24 Aligned_cols=157 Identities=28% Similarity=0.376 Sum_probs=83.2
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhcC-CCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeec--hhhhhh--hhc
Q 047690 327 DVAGCDEAKQEIMEFVHFLKNPRKYEDLG-AKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISG--SDFMEM--FVG 401 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~Lk~p~~~~~lg-~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~--s~~~~~--~vG 401 (811)
.|.|+|++|+-|.-.+ |=...+.+...| .+-.-+|||+|-||||||.+.+.+++-+..-.+ .|+ +.-+.. |+.
T Consensus 430 sIye~edvKkglLLqL-fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQL-FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHH-hcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCccchhcceeeEE
Confidence 3566676666654322 111111222222 233457999999999999999999997643332 222 111111 110
Q ss_pred CchhHHHHHHHHHH---hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhh------hcC--CCCCcEEEEe
Q 047690 402 VGPSRVRNLFQEAR---QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEM------DGF--GTTAGVVVIA 470 (811)
Q Consensus 402 ~~~~~vr~lF~~A~---~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~em------Dg~--~~~~~VIVIa 470 (811)
... .-+++.-+.- ....+|..|||+|.+- +..+.+|.+.+++= .|. .-+.+.-|+|
T Consensus 508 rd~-dtkqlVLesGALVLSD~GiCCIDEFDKM~------------dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLA 574 (804)
T KOG0478|consen 508 KDP-DTRQLVLESGALVLSDNGICCIDEFDKMS------------DSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLA 574 (804)
T ss_pred ecC-ccceeeeecCcEEEcCCceEEchhhhhhh------------HHHHHHHHHHHHHhhhhHhhcceeeeccccceeee
Confidence 000 0111111110 1124689999999992 22233444443321 011 1133456889
Q ss_pred cCCCCc-------------ccchhhcCCCCcceee-eccCCCHH
Q 047690 471 GTNRPD-------------ILDKALLRPGRFDRQI-TIDKPDIK 500 (811)
Q Consensus 471 aTN~pd-------------~LDpALlRpGRFdr~I-~v~~Pd~~ 500 (811)
++|... .|+|.|++ |||.++ -++.||..
T Consensus 575 aANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 575 AANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDER 616 (804)
T ss_pred eeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchh
Confidence 998533 37899999 999764 56677766
No 248
>PF05729 NACHT: NACHT domain
Probab=98.19 E-value=2e-05 Score=76.62 Aligned_cols=142 Identities=15% Similarity=0.208 Sum_probs=74.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc------C--CC-eEEeechhhhhh------------hhcCchhHHHHH-HHHHHhcC
Q 047690 361 GALLVGPPGTGKTLLAKATAGES------G--VP-FLSISGSDFMEM------------FVGVGPSRVRNL-FQEARQCA 418 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~------g--vp-fi~vs~s~~~~~------------~vG~~~~~vr~l-F~~A~~~a 418 (811)
-++|+|+||+|||++++.++..+ . .+ ++.+++.++... ........+... ...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 37899999999999999998754 1 12 233443332211 111111112222 22334455
Q ss_pred CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCC
Q 047690 419 PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPD 498 (811)
Q Consensus 419 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd 498 (811)
+.+|+||.+|.+...... .........+.+++.. .......++|.+.+.....+...+.. ...+.+..-+
T Consensus 82 ~~llilDglDE~~~~~~~----~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~ 151 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS----QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFS 151 (166)
T ss_pred ceEEEEechHhcccchhh----hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCC
Confidence 789999999999542210 0001112233333322 11223344444333322222322322 1568898899
Q ss_pred HHHHHHHHHHHHhh
Q 047690 499 IKGRDQIFQVYLKK 512 (811)
Q Consensus 499 ~~eR~eIL~~~l~~ 512 (811)
.+++.++++.+++.
T Consensus 152 ~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 152 EEDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988764
No 249
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=98.17 E-value=6.1e-06 Score=75.39 Aligned_cols=87 Identities=25% Similarity=0.321 Sum_probs=43.9
Q ss_pred CCCCCCccccHHHHHHHHcCCCCccEEEEecCeEEEEEEecCCCCCCccCCCCCCCCCCCCCCCCCceeEEEEcCChhHH
Q 047690 155 LSPREQQQISFQEFKNKLLEPGLVDHIVVSNKSVAKVFVRSSPHNQTIEDDFHGPVSGTPSKGHGGQYKYYFNIGSVEAF 234 (811)
Q Consensus 155 ~~~~~~~~i~~~~f~~~~l~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (811)
...+..++|+|++|++ +|++|.|++|+|.++.+.......... .... . ... .......+..+++.++.|
T Consensus 22 ~~~~~~~~i~YS~F~~-~l~~g~V~~V~i~~~~~~~~~~~~~~~-~~~~-~-------~~~-~~~~~~~~~~~~~~~~~~ 90 (110)
T PF06480_consen 22 SNNSQTKEISYSEFLQ-MLEKGNVKKVVIQNDKITEPKKDNPTG-DIEG-K-------TKD-GSKYTTFYTPSIPSVDSF 90 (110)
T ss_dssp ----SSEE--HHHHHH-TGGGT-EEEEEEETTTEE----------EEEE---------TTT-S-STT--EEEE-S-HHHH
T ss_pred cccCCCcEECHHHHHH-HHHcCCEEEEEEECCEEEEeeeccccc-cccc-c-------ccC-CCccEEEEEcCCCCCHHH
Confidence 3345678999999996 699999999999987665111100000 0000 0 000 000111134455678999
Q ss_pred HHHHHHHHHHcCCCCCCc
Q 047690 235 EEKLEEAQETLGIDPHDF 252 (811)
Q Consensus 235 ~~~l~~~~~~~~~~~~~~ 252 (811)
.+.|.+++.+.|+.+...
T Consensus 91 ~~~L~~~~~~~~v~~~~~ 108 (110)
T PF06480_consen 91 DEFLIEALVEKGVKYESV 108 (110)
T ss_dssp HHHHHHHHHHTT--TTT-
T ss_pred HHHHHHHHHHCCCcccee
Confidence 999999999999876543
No 250
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.16 E-value=1e-05 Score=96.38 Aligned_cols=221 Identities=24% Similarity=0.244 Sum_probs=122.5
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhcC--CCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEe-echhhhhhhhcC
Q 047690 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLG--AKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSI-SGSDFMEMFVGV 402 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg--~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~v-s~s~~~~~~vG~ 402 (811)
-.|.|++++|+.+.=.+ +....+...-| .+-.-+|||.|-||||||.|.|.+++-+..-++.- .++.- +|.
T Consensus 286 PsIyG~e~VKkAilLqL--fgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~GL 359 (682)
T COG1241 286 PSIYGHEDVKKAILLQL--FGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AGL 359 (682)
T ss_pred ccccCcHHHHHHHHHHh--cCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cCc
Confidence 35677777777664322 22222211111 22235799999999999999999998775444321 12211 222
Q ss_pred chhHHHHHH-----HHH---HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC-----------CC
Q 047690 403 GPSRVRNLF-----QEA---RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG-----------TT 463 (811)
Q Consensus 403 ~~~~vr~lF-----~~A---~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~-----------~~ 463 (811)
++.-+++-+ -.| ....++|+.|||+|.+- + ...+.+...|+... -+
T Consensus 360 TAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~------------~---~dr~aihEaMEQQtIsIaKAGI~atLn 424 (682)
T COG1241 360 TAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN------------E---EDRVAIHEAMEQQTISIAKAGITATLN 424 (682)
T ss_pred eeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC------------h---HHHHHHHHHHHhcEeeecccceeeecc
Confidence 222222222 011 11236799999999882 1 12234444454321 12
Q ss_pred CcEEEEecCCCCc-------------ccchhhcCCCCcceeeecc-CCCHHHHHHHHHHHHhhcc---------------
Q 047690 464 AGVVVIAGTNRPD-------------ILDKALLRPGRFDRQITID-KPDIKGRDQIFQVYLKKIK--------------- 514 (811)
Q Consensus 464 ~~VIVIaaTN~pd-------------~LDpALlRpGRFdr~I~v~-~Pd~~eR~eIL~~~l~~~~--------------- 514 (811)
.+.-|+||+|... +|++.|++ |||..+.+. .|+.+.-..|.++.+....
T Consensus 425 ARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~ 502 (682)
T COG1241 425 ARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDE 502 (682)
T ss_pred hhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccc
Confidence 3456888999654 47889999 999876554 6666533333333222210
Q ss_pred -------------------CCCC-CchhhhHHH---------------hhCCCCcHHHHHHHHHHHHHHHHHcCCCccCH
Q 047690 515 -------------------LDHE-PSYYSQRLA---------------ALTPGFAGADIANVCNEAALIAARGENSQVTM 559 (811)
Q Consensus 515 -------------------l~~~-~d~~l~~LA---------------~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ 559 (811)
..+. .+...+.|. ..+-..|.++|..+++-|-..|..+-+..|+.
T Consensus 503 ~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~ 582 (682)
T COG1241 503 VEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEE 582 (682)
T ss_pred cccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCH
Confidence 0000 000001111 01123567888888888777777778888888
Q ss_pred HHHHHHHHHH
Q 047690 560 EHFEAAIDRV 569 (811)
Q Consensus 560 ed~~~Al~rv 569 (811)
+|+.+|++-+
T Consensus 583 eD~~eAi~lv 592 (682)
T COG1241 583 EDVDEAIRLV 592 (682)
T ss_pred HHHHHHHHHH
Confidence 8888888644
No 251
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.15 E-value=7.5e-07 Score=98.75 Aligned_cols=220 Identities=23% Similarity=0.222 Sum_probs=112.5
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhh--cCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh--hhhhc-
Q 047690 327 DVAGCDEAKQEIMEFVHFLKNPRKYED--LGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM--EMFVG- 401 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~Lk~p~~~~~--lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~--~~~vG- 401 (811)
+|.|.+.+|..+.=.+ +........ ...+-.-++||+|.||||||.|.+.++.-+.. -+++++.... .....
T Consensus 25 ~i~g~~~iK~aill~L--~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr-~v~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQL--FGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPR-SVYTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCC--TT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SS-EEEEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHH--HhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCc-eEEECCCCcccCCcccee
Confidence 5788888877664211 111111000 01233457999999999999999988765433 3333332210 00000
Q ss_pred -----CchhHH-HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC-----------CCC
Q 047690 402 -----VGPSRV-RNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG-----------TTA 464 (811)
Q Consensus 402 -----~~~~~v-r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~-----------~~~ 464 (811)
.++-.+ ...+-.| ..+|++|||+|.+-. .....|+..|+.-. -+.
T Consensus 102 ~~d~~~~~~~leaGalvla---d~GiccIDe~dk~~~---------------~~~~~l~eaMEqq~isi~kagi~~~l~a 163 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLA---DGGICCIDEFDKMKE---------------DDRDALHEAMEQQTISIAKAGIVTTLNA 163 (331)
T ss_dssp CCCGGTSSECEEE-HHHHC---TTSEEEECTTTT--C---------------HHHHHHHHHHHCSCEEECTSSSEEEEE-
T ss_pred ccccccceeEEeCCchhcc---cCceeeecccccccc---------------hHHHHHHHHHHcCeeccchhhhcccccc
Confidence 000000 0122222 347999999999821 22455566666421 134
Q ss_pred cEEEEecCCCCc-------------ccchhhcCCCCcceeeec-cCCCHHHHHHHHHHHHhhccCCC-------------
Q 047690 465 GVVVIAGTNRPD-------------ILDKALLRPGRFDRQITI-DKPDIKGRDQIFQVYLKKIKLDH------------- 517 (811)
Q Consensus 465 ~VIVIaaTN~pd-------------~LDpALlRpGRFdr~I~v-~~Pd~~eR~eIL~~~l~~~~l~~------------- 517 (811)
+.-|+|++|... .+++.|++ |||-.+.+ +.|+.+.-..|.++.+.......
T Consensus 164 r~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~ 241 (331)
T PF00493_consen 164 RCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKP 241 (331)
T ss_dssp --EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-T
T ss_pred hhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCc
Confidence 577999998654 47889999 99988765 57776555555554443321110
Q ss_pred -CCchhhh--HHHh------------------------------hCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 047690 518 -EPSYYSQ--RLAA------------------------------LTPGFAGADIANVCNEAALIAARGENSQVTMEHFEA 564 (811)
Q Consensus 518 -~~d~~l~--~LA~------------------------------~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~ 564 (811)
+.+..-. ..|+ .....|.+.|..+++-|...|..+-+..|+.+|+..
T Consensus 242 ~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~ 321 (331)
T PF00493_consen 242 ISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEE 321 (331)
T ss_dssp T-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHH
T ss_pred cCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHH
Confidence 0000000 0111 012345677888888888888888899999999999
Q ss_pred HHHHH
Q 047690 565 AIDRV 569 (811)
Q Consensus 565 Al~rv 569 (811)
|++-+
T Consensus 322 Ai~L~ 326 (331)
T PF00493_consen 322 AIRLF 326 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98643
No 252
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.13 E-value=6.8e-06 Score=79.30 Aligned_cols=110 Identities=25% Similarity=0.278 Sum_probs=62.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhh----------------------hcCc-h-hHHHHHHHHH
Q 047690 362 ALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMF----------------------VGVG-P-SRVRNLFQEA 414 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~----------------------vG~~-~-~~vr~lF~~A 414 (811)
++|+||||+|||++++.++..+ +.+++.++........ .... . ...+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 5677777664332110 0000 1 1112234455
Q ss_pred HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 415 RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 415 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
....|.+|+|||+..+....... ..+........+..++..+. ..++.+|.+++.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREI-REGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 66778999999999986543210 01122233344444444433 23555666655443
No 253
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.02 E-value=9.9e-05 Score=79.10 Aligned_cols=159 Identities=15% Similarity=0.209 Sum_probs=83.4
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHh--cCCCe---EEeechh------hh----hhhh--------cCchhHHHHHHHHHH
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGE--SGVPF---LSISGSD------FM----EMFV--------GVGPSRVRNLFQEAR 415 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e--~gvpf---i~vs~s~------~~----~~~v--------G~~~~~vr~lF~~A~ 415 (811)
.+-|.|+|++|+|||+||+.+++. ....| +.++.+. +. .... ......+...+....
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 345889999999999999999987 32222 2233221 11 1111 111223334444444
Q ss_pred hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeecc
Q 047690 416 QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITID 495 (811)
Q Consensus 416 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~ 495 (811)
...+++|+||+++... .+..+...+..+ ..+.-||.||.... +-..... -+..++++
T Consensus 99 ~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~~--~~~~kilvTTR~~~-v~~~~~~---~~~~~~l~ 155 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDEE-----------------DLEELREPLPSF--SSGSKILVTTRDRS-VAGSLGG---TDKVIELE 155 (287)
T ss_dssp CCTSEEEEEEEE-SHH-----------------HH-------HCH--HSS-EEEEEESCGG-GGTTHHS---CEEEEECS
T ss_pred ccccceeeeeeecccc-----------------cccccccccccc--cccccccccccccc-ccccccc---cccccccc
Confidence 5559999999987651 222222222221 12344555665433 2222211 14689999
Q ss_pred CCCHHHHHHHHHHHHhhcc--CCCCCchhhhHHHhhCCCCcHHHHHHH
Q 047690 496 KPDIKGRDQIFQVYLKKIK--LDHEPSYYSQRLAALTPGFAGADIANV 541 (811)
Q Consensus 496 ~Pd~~eR~eIL~~~l~~~~--l~~~~d~~l~~LA~~t~GfSgaDL~~L 541 (811)
..+.++-.++|..+..... .....+.....|+..+.|. |-.|.-+
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 9999999999999876544 1122233357788888764 4444444
No 254
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.02 E-value=5.1e-05 Score=80.15 Aligned_cols=132 Identities=22% Similarity=0.283 Sum_probs=78.3
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCC
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGG 438 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~ 438 (811)
..|..++||+|||||.++|++|..+|.+++.++|++-.+ ...+..+|.-+... .+-+.+||++.+
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-------- 96 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-------- 96 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS--------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh--------
Confidence 356789999999999999999999999999999998543 46677777766553 479999999987
Q ss_pred CCCCchHHHHHHHHHHHhhh----cCC-----------CCCcEEEEecCCC----CcccchhhcCCCCcceeeeccCCCH
Q 047690 439 FSGANDERESTLNQLLVEMD----GFG-----------TTAGVVVIAGTNR----PDILDKALLRPGRFDRQITIDKPDI 499 (811)
Q Consensus 439 ~~~~~~e~~~tLnqLL~emD----g~~-----------~~~~VIVIaaTN~----pd~LDpALlRpGRFdr~I~v~~Pd~ 499 (811)
+.+.-.++.+.+..+. .-. -+.+.-++.|.|. -..||+.|+. -| |.+.+..||.
T Consensus 97 ----~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~ 169 (231)
T PF12774_consen 97 ----SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDL 169 (231)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--H
T ss_pred ----hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCH
Confidence 2333334444443321 100 0112233344452 2468888877 45 8899999997
Q ss_pred HHHHHHHHHHHhhccC
Q 047690 500 KGRDQIFQVYLKKIKL 515 (811)
Q Consensus 500 ~eR~eIL~~~l~~~~l 515 (811)
+. |.+..+-..+.
T Consensus 170 ~~---I~ei~L~s~GF 182 (231)
T PF12774_consen 170 SL---IAEILLLSQGF 182 (231)
T ss_dssp HH---HHHHHHHCCCT
T ss_pred HH---HHHHHHHHcCc
Confidence 54 44445544443
No 255
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.01 E-value=1.5e-05 Score=89.35 Aligned_cols=137 Identities=23% Similarity=0.323 Sum_probs=77.6
Q ss_pred CCCCCcEEEEcCCCCCHHHHHHHHHHhcCC-CeEEeechhhhhh-------hhcCchhHHHHHHHHHHhcCCeEEEEcCc
Q 047690 356 AKIPKGALLVGPPGTGKTLLAKATAGESGV-PFLSISGSDFMEM-------FVGVGPSRVRNLFQEARQCAPSIIFIDEI 427 (811)
Q Consensus 356 ~~~pkGvLL~GPPGTGKT~LAkAlA~e~gv-pfi~vs~s~~~~~-------~vG~~~~~vr~lF~~A~~~aP~ILfIDEI 427 (811)
...|+|++||||+|+|||+|.-.+...+.. .-..+...+|+.. +.+ ...-+..+-..... ...+|++||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~-~~~~l~~va~~l~~-~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRG-QDDPLPQVADELAK-ESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhC-CCccHHHHHHHHHh-cCCEEEEeee
Confidence 457999999999999999999999887644 1122222333321 111 11122222222222 2349999998
Q ss_pred chhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCC-CcccchhhcCCCCcceeeeccCCCHHHHHHHH
Q 047690 428 DAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNR-PDILDKALLRPGRFDRQITIDKPDIKGRDQIF 506 (811)
Q Consensus 428 DaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~-pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL 506 (811)
+.- +-.-...+..|+..+= ..++++|+|+|+ |+.| . ++.+.+...+| -.++|
T Consensus 137 ~V~------------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~L----y-~~gl~r~~Flp------~I~~l 189 (362)
T PF03969_consen 137 QVT------------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDL----Y-KNGLQRERFLP------FIDLL 189 (362)
T ss_pred ecc------------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHH----c-CCcccHHHHHH------HHHHH
Confidence 653 1111335555555542 368999999996 3333 2 23333332222 25667
Q ss_pred HHHHhhccCCCCCch
Q 047690 507 QVYLKKIKLDHEPSY 521 (811)
Q Consensus 507 ~~~l~~~~l~~~~d~ 521 (811)
+.++.-+.++...|.
T Consensus 190 ~~~~~vv~ld~~~Dy 204 (362)
T PF03969_consen 190 KRRCDVVELDGGVDY 204 (362)
T ss_pred HhceEEEEecCCCch
Confidence 777777777666665
No 256
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.00 E-value=4.9e-05 Score=88.26 Aligned_cols=223 Identities=21% Similarity=0.192 Sum_probs=122.2
Q ss_pred ccccccchHhHHHHHHHHHHhcCchhhhh--cCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcC
Q 047690 325 FRDVAGCDEAKQEIMEFVHFLKNPRKYED--LGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGV 402 (811)
Q Consensus 325 f~dV~G~eeak~eL~e~v~~Lk~p~~~~~--lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~ 402 (811)
|-.|.|.+.+|.-+.-.+ +..-.++.. ...+-.-+|+|+|.|||||+-+.+++++-+...++ +++..- .-.|.
T Consensus 344 ~PsIyGhe~VK~GilL~L--fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaS--SaAGL 418 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSL--FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKAS--SAAGL 418 (764)
T ss_pred CccccchHHHHhhHHHHH--hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCccc--ccccc
Confidence 556778777777664322 222222222 22233457999999999999999999986644433 222110 00111
Q ss_pred chhHHHH--HHH---HHH---hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC-----------CC
Q 047690 403 GPSRVRN--LFQ---EAR---QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG-----------TT 463 (811)
Q Consensus 403 ~~~~vr~--lF~---~A~---~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~-----------~~ 463 (811)
+..-+++ -++ +|- -...+|..|||+|.+..+. -..+++.|+... -+
T Consensus 419 TaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~d---------------qvAihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKD---------------QVAIHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred eEEEEecCCCCceeeecCcEEEccCceEEechhcccChHh---------------HHHHHHHHHhheehheecceEEeec
Confidence 1111110 000 111 1124699999999993211 123344444321 12
Q ss_pred CcEEEEecCCCCc-------------ccchhhcCCCCccee-eeccCCCHHHHHHHHHHHHhhccC-CCCCch-------
Q 047690 464 AGVVVIAGTNRPD-------------ILDKALLRPGRFDRQ-ITIDKPDIKGRDQIFQVYLKKIKL-DHEPSY------- 521 (811)
Q Consensus 464 ~~VIVIaaTN~pd-------------~LDpALlRpGRFdr~-I~v~~Pd~~eR~eIL~~~l~~~~l-~~~~d~------- 521 (811)
.+.-||||+|+.. .++++|++ |||.. |-++-|+...-..|-++.+..... +.....
T Consensus 484 ARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e 561 (764)
T KOG0480|consen 484 ARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLE 561 (764)
T ss_pred chhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHH
Confidence 3345889998643 37899999 99976 456777776655555554432111 000000
Q ss_pred -------------------hhhHH---------------HhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 047690 522 -------------------YSQRL---------------AALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAID 567 (811)
Q Consensus 522 -------------------~l~~L---------------A~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~ 567 (811)
..+.+ .+.+...|.++|+.|++-+-.+|.-+-...||.+|+++|.+
T Consensus 562 ~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~e 641 (764)
T KOG0480|consen 562 QVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVE 641 (764)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHH
Confidence 00000 11123567788888888776677767777888888888876
Q ss_pred HH
Q 047690 568 RV 569 (811)
Q Consensus 568 rv 569 (811)
-+
T Consensus 642 Ll 643 (764)
T KOG0480|consen 642 LL 643 (764)
T ss_pred HH
Confidence 44
No 257
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.99 E-value=5.4e-05 Score=96.89 Aligned_cols=180 Identities=19% Similarity=0.249 Sum_probs=100.6
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCe---EEeech---h
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPF---LSISGS---D 394 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpf---i~vs~s---~ 394 (811)
+...+++++|.++..+++.+++.. .....+-+-|+||+|+||||||+++++.....| +.++.. .
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 345688999999999888877642 112234578999999999999999988764433 111110 0
Q ss_pred hhhhhhcC-----------chhHHH-------------HHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHH
Q 047690 395 FMEMFVGV-----------GPSRVR-------------NLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTL 450 (811)
Q Consensus 395 ~~~~~vG~-----------~~~~vr-------------~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tL 450 (811)
..+.+... ....+. ..........+.+|+||++|.. ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-----------------~~l 311 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-----------------DVL 311 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-----------------HHH
Confidence 00000000 000000 1112222345779999998653 223
Q ss_pred HHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCC-CchhhhHHHhh
Q 047690 451 NQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHE-PSYYSQRLAAL 529 (811)
Q Consensus 451 nqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~-~d~~l~~LA~~ 529 (811)
..+....+.+.. +-.||.||... .+++....++.+.++.|+.++..+++..++-+.....+ .......++..
T Consensus 312 ~~L~~~~~~~~~--GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~ 384 (1153)
T PLN03210 312 DALAGQTQWFGS--GSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALR 384 (1153)
T ss_pred HHHHhhCccCCC--CcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 333333333322 23344456643 33333356788999999999999999988754322211 11123456666
Q ss_pred CCCCc
Q 047690 530 TPGFA 534 (811)
Q Consensus 530 t~GfS 534 (811)
+.|..
T Consensus 385 c~GLP 389 (1153)
T PLN03210 385 AGNLP 389 (1153)
T ss_pred hCCCc
Confidence 66654
No 258
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.97 E-value=0.00023 Score=81.92 Aligned_cols=173 Identities=16% Similarity=0.186 Sum_probs=87.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEee-ch------------hhhhhhhcCchhHHHHHHHHHHh-----------
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSIS-GS------------DFMEMFVGVGPSRVRNLFQEARQ----------- 416 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs-~s------------~~~~~~vG~~~~~vr~lF~~A~~----------- 416 (811)
-+||+||+||||||.++.++.++|..++.=+ +- .+.......--.........+.+
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~ 191 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDL 191 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhccccc
Confidence 3789999999999999999999988776533 11 11111111111122222223311
Q ss_pred -cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCC------CCcc
Q 047690 417 -CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRP------GRFD 489 (811)
Q Consensus 417 -~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRp------GRFd 489 (811)
..|.+|+|||+=..... + ....+..+|.++-....-.-|++|.-++.++..++..+.| .|++
T Consensus 192 ~~~~~liLveDLPn~~~~---------d--~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~ 260 (634)
T KOG1970|consen 192 RTDKKLILVEDLPNQFYR---------D--DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS 260 (634)
T ss_pred ccCceEEEeeccchhhhh---------h--hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcc
Confidence 23669999999666321 1 1223333333332222222234444344445444433322 1443
Q ss_pred eeeeccCCCHHHHHHHHHHHHhhccCCCC-----CchhhhHHHhhCCCCcHHHHHHHHHHHHHHH
Q 047690 490 RQITIDKPDIKGRDQIFQVYLKKIKLDHE-----PSYYSQRLAALTPGFAGADIANVCNEAALIA 549 (811)
Q Consensus 490 r~I~v~~Pd~~eR~eIL~~~l~~~~l~~~-----~d~~l~~LA~~t~GfSgaDL~~LvneAal~A 549 (811)
.|.|.+-...-.+..|...+........ ....++.++... ++||+.+++...+.+
T Consensus 261 -~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s----~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 261 -NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGS----GGDIRSAINSLQLSS 320 (634)
T ss_pred -eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhc----CccHHHHHhHhhhhc
Confidence 4666655554455555555544322222 122234444443 459999999776665
No 259
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.96 E-value=3.1e-05 Score=79.58 Aligned_cols=110 Identities=18% Similarity=0.251 Sum_probs=63.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhh-hhhhcC------------------c----hhHHHHHHHH
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFM-EMFVGV------------------G----PSRVRNLFQE 413 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~-~~~vG~------------------~----~~~vr~lF~~ 413 (811)
.-++|+||||||||+++..++.+. +.+.++++..++. +.+... . ...+..+...
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 92 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSKF 92 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHHH
Confidence 347899999999999999988643 6778888876421 110000 0 0113333444
Q ss_pred HHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC
Q 047690 414 ARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN 473 (811)
Q Consensus 414 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN 473 (811)
+....|++|+||-|.++.+.... .....+.+.+..++..+..+....++.+|.+..
T Consensus 93 ~~~~~~~lvVIDSis~l~~~~~~----~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 93 IDRDSASLVVVDSFTALYRLELS----DDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HhhcCccEEEEeCcHHHhHHHhC----CccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 45557899999999998643211 111122333444444444443455666776644
No 260
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=4.8e-05 Score=82.72 Aligned_cols=123 Identities=18% Similarity=0.157 Sum_probs=82.8
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeec--------hhhhhhh-hc----CchhHHHHHHHHHHhcC---
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISG--------SDFMEMF-VG----VGPSRVRNLFQEARQCA--- 418 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~--------s~~~~~~-vG----~~~~~vr~lF~~A~~~a--- 418 (811)
..++|...||+||+|+||+.+|.++|..+-+.--.-+| .|+...+ .+ .+-+.+|++.+.+....
T Consensus 15 ~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 15 DQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCC
Confidence 45678899999999999999999999876432100011 1110000 01 13445677666554321
Q ss_pred -CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCC
Q 047690 419 -PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKP 497 (811)
Q Consensus 419 -P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~P 497 (811)
.-|++||++|.+. ....|.||..++. +..++++|..|+.++.|.|.+++ |+ ..+.|+.+
T Consensus 95 ~~kv~ii~~ad~mt---------------~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 95 PYKIYIIHEADRMT---------------LDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred CceEEEEechhhcC---------------HHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 2599999999993 2456778888876 66788888888889999999998 77 35666544
No 261
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.84 E-value=0.00014 Score=73.01 Aligned_cols=32 Identities=41% Similarity=0.470 Sum_probs=26.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc---CCCeEEeech
Q 047690 362 ALLVGPPGTGKTLLAKATAGES---GVPFLSISGS 393 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s 393 (811)
+||+||||||||+|+..++.+. |.++++++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6899999999999999887643 7788777753
No 262
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.00046 Score=75.30 Aligned_cols=129 Identities=14% Similarity=0.129 Sum_probs=84.6
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeE-----Eeechhhhhh---------hh---c--CchhHHHHHHHHHH
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL-----SISGSDFMEM---------FV---G--VGPSRVRNLFQEAR 415 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi-----~vs~s~~~~~---------~v---G--~~~~~vr~lF~~A~ 415 (811)
..+++.++|++|| +||+++|+++|..+-+.-- .-.|...... ++ | ..-..+|++...+.
T Consensus 20 ~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~ 97 (290)
T PRK07276 20 QDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFS 97 (290)
T ss_pred cCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHh
Confidence 3467889999996 6899999999986532110 0011111100 00 1 12356777766554
Q ss_pred hc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCccee
Q 047690 416 QC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQ 491 (811)
Q Consensus 416 ~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~ 491 (811)
.. ...|++||++|.+. ....|.||..++. +..++++|..|+.++.|-|.+++ |+ ..
T Consensus 98 ~~p~~~~~kV~II~~ad~m~---------------~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~ 157 (290)
T PRK07276 98 QSGYEGKQQVFIIKDADKMH---------------VNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QI 157 (290)
T ss_pred hCcccCCcEEEEeehhhhcC---------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-ee
Confidence 32 23599999999983 3466888888887 56678888888889999999999 88 57
Q ss_pred eeccCCCHHHHHHHH
Q 047690 492 ITIDKPDIKGRDQIF 506 (811)
Q Consensus 492 I~v~~Pd~~eR~eIL 506 (811)
|.|+. +.+...+++
T Consensus 158 i~f~~-~~~~~~~~L 171 (290)
T PRK07276 158 FHFPK-NEAYLIQLL 171 (290)
T ss_pred eeCCC-cHHHHHHHH
Confidence 77765 444444444
No 263
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.82 E-value=9.7e-05 Score=81.54 Aligned_cols=114 Identities=21% Similarity=0.220 Sum_probs=66.5
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh----hhc------------CchhHHHHHHHHHHhcCCe
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM----FVG------------VGPSRVRNLFQEARQCAPS 420 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~----~vG------------~~~~~vr~lF~~A~~~aP~ 420 (811)
+-++|+||||||||+||..++.++ +.+++++++.+..+. -.| ..+..+..+....+...++
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~ 135 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVD 135 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCc
Confidence 347899999999999988776544 677777766432211 011 1122233333334556789
Q ss_pred EEEEcCcchhhhhcCCCCCCCCc--hHHHHHHHHHHHhhhcCCCCCcEEEEecCC
Q 047690 421 IIFIDEIDAIGRARGRGGFSGAN--DERESTLNQLLVEMDGFGTTAGVVVIAGTN 473 (811)
Q Consensus 421 ILfIDEIDaL~~~r~~~~~~~~~--~e~~~tLnqLL~emDg~~~~~~VIVIaaTN 473 (811)
+|+||-+.++.+...-.+..+.. ....+.+.++|..+...-...++.+|.+..
T Consensus 136 lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 136 IIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred EEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 99999999997542211111111 123345556666666555556677776533
No 264
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.81 E-value=3.6e-05 Score=87.22 Aligned_cols=227 Identities=20% Similarity=0.235 Sum_probs=124.0
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhcCCC--CCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEee-chhhhhhhhcCc
Q 047690 327 DVAGCDEAKQEIMEFVHFLKNPRKYEDLGAK--IPKGALLVGPPGTGKTLLAKATAGESGVPFLSIS-GSDFMEMFVGVG 403 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~--~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs-~s~~~~~~vG~~ 403 (811)
+|.|.+++|+.|.-++- ..+.+-..-|.+ -.-+|+|.|.||+-||-|.+++.+-+-.-.+..- +|. -+|.+
T Consensus 343 EIyGheDVKKaLLLlLV--Ggvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGLT 416 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLV--GGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGLT 416 (721)
T ss_pred hhccchHHHHHHHHHhh--CCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----ccccc
Confidence 68899999999876653 233322222333 3457999999999999999999987755555432 111 12333
Q ss_pred hhHHHHHHHH-------H-HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh--cCC--CCCcEEEEec
Q 047690 404 PSRVRNLFQE-------A-RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD--GFG--TTAGVVVIAG 471 (811)
Q Consensus 404 ~~~vr~lF~~-------A-~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD--g~~--~~~~VIVIaa 471 (811)
++-+++-... | .-...+|..|||+|.+..... -....++.|--..+. |+. -+.+.-|+||
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DR--------tAIHEVMEQQTISIaKAGI~TtLNAR~sILaA 488 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDR--------TAIHEVMEQQTISIAKAGINTTLNARTSILAA 488 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhh--------HHHHHHHHhhhhhhhhhccccchhhhHHhhhh
Confidence 3333221100 0 001236899999999943211 011112222111111 111 1345678888
Q ss_pred CCCCc-------------ccchhhcCCCCcceeeec-cCCCHHHHHHHHHHHH----hhc--cCCCC-Cc--h-------
Q 047690 472 TNRPD-------------ILDKALLRPGRFDRQITI-DKPDIKGRDQIFQVYL----KKI--KLDHE-PS--Y------- 521 (811)
Q Consensus 472 TN~pd-------------~LDpALlRpGRFdr~I~v-~~Pd~~eR~eIL~~~l----~~~--~l~~~-~d--~------- 521 (811)
.|... .|++||++ |||..+-+ +.||.+.-..+.++.. ... ..+.+ .+ .
T Consensus 489 ANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ 566 (721)
T KOG0482|consen 489 ANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISL 566 (721)
T ss_pred cCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHH
Confidence 88633 48999999 99976544 4777655444433322 111 00000 00 0
Q ss_pred -----------hhhHH----------H--hhCC-CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 047690 522 -----------YSQRL----------A--ALTP-GFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 522 -----------~l~~L----------A--~~t~-GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rv 569 (811)
..+.+ + ..-. -.|++-|-.+++-+...|..+-...|..+|+.+|++-+
T Consensus 567 ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 567 AKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 00011 0 0011 23567777777777777777777888888888888654
No 265
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.80 E-value=4.9e-05 Score=75.62 Aligned_cols=59 Identities=25% Similarity=0.389 Sum_probs=35.8
Q ss_pred cccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC---eEEeechhh
Q 047690 328 VAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP---FLSISGSDF 395 (811)
Q Consensus 328 V~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp---fi~vs~s~~ 395 (811)
++|-++..+++...++ .. ....++.++|+|++|+|||+|++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AA--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GT--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HH--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5677877777776664 11 22335789999999999999999987765322 777766555
No 266
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00036 Score=76.51 Aligned_cols=128 Identities=14% Similarity=0.126 Sum_probs=87.3
Q ss_pred CCCCCcEEEEcCCCCCHHHHHHHHHHhcCC-----------C--eEEeechhhhhhhhcCchhHHHHHHHHHHhc-----
Q 047690 356 AKIPKGALLVGPPGTGKTLLAKATAGESGV-----------P--FLSISGSDFMEMFVGVGPSRVRNLFQEARQC----- 417 (811)
Q Consensus 356 ~~~pkGvLL~GPPGTGKT~LAkAlA~e~gv-----------p--fi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~----- 417 (811)
.+++...||+|+.|+||+.+|++++..+-+ | ++.++.. + ...+-..++.+.+.....
T Consensus 15 ~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g--~~i~vd~Ir~l~~~~~~~~~~~~ 89 (299)
T PRK07132 15 NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---D--KDLSKSEFLSAINKLYFSSFVQS 89 (299)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---C--CcCCHHHHHHHHHHhccCCcccC
Confidence 356778899999999999999999987622 2 2222200 0 001234566665555322
Q ss_pred CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCC
Q 047690 418 APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKP 497 (811)
Q Consensus 418 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~P 497 (811)
..-|++||++|.+. ....|.||..++. +...+++|..|+.++.|-|.+++ |+ ..+.+.+|
T Consensus 90 ~~KvvII~~~e~m~---------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l 149 (299)
T PRK07132 90 QKKILIIKNIEKTS---------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEP 149 (299)
T ss_pred CceEEEEecccccC---------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCC
Confidence 34699999998872 2356778888876 55666777677788899999988 76 57999999
Q ss_pred CHHHHHHHHHH
Q 047690 498 DIKGRDQIFQV 508 (811)
Q Consensus 498 d~~eR~eIL~~ 508 (811)
+.++..+.|..
T Consensus 150 ~~~~l~~~l~~ 160 (299)
T PRK07132 150 DQQKILAKLLS 160 (299)
T ss_pred CHHHHHHHHHH
Confidence 88776665543
No 267
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.78 E-value=5.8e-05 Score=69.98 Aligned_cols=22 Identities=45% Similarity=0.730 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
|+|+||||+|||++|+.||..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998765
No 268
>PRK08118 topology modulation protein; Reviewed
Probab=97.75 E-value=0.00013 Score=73.18 Aligned_cols=103 Identities=21% Similarity=0.270 Sum_probs=64.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCC
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFS 440 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~ 440 (811)
.|+++||||+||||||+.|+..++.|++.++.--+...+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~-------------------------------------- 44 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGV-------------------------------------- 44 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCC--------------------------------------
Confidence 489999999999999999999999999877642211000000
Q ss_pred CCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhcc
Q 047690 441 GANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIK 514 (811)
Q Consensus 441 ~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~ 514 (811)
..++....+.+++. ..+. |.-.|.+..++..+. +.|..|.++.|...-...+++.+++..+
T Consensus 45 -~~~~~~~~~~~~~~-------~~~w--VidG~~~~~~~~~l~---~~d~vi~Ld~p~~~~~~R~~~R~~~~~g 105 (167)
T PRK08118 45 -PKEEQITVQNELVK-------EDEW--IIDGNYGGTMDIRLN---AADTIIFLDIPRTICLYRAFKRRVQYRG 105 (167)
T ss_pred -CHHHHHHHHHHHhc-------CCCE--EEeCCcchHHHHHHH---hCCEEEEEeCCHHHHHHHHHHHHHHHcC
Confidence 01122223333321 1233 223345555554443 5899999999988888888888876443
No 269
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.70 E-value=6.9e-05 Score=79.14 Aligned_cols=29 Identities=34% Similarity=0.674 Sum_probs=23.7
Q ss_pred cCCCCCCc--EEEEcCCCCCHHHHHHHHHHh
Q 047690 354 LGAKIPKG--ALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 354 lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e 382 (811)
+...+++| +-|.||+|||||||.+.||+-
T Consensus 22 i~L~v~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 22 INLSVEKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred ceeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34455555 779999999999999999984
No 270
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.68 E-value=7.9e-05 Score=78.11 Aligned_cols=73 Identities=27% Similarity=0.284 Sum_probs=42.1
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechh-hh---------hhhhcCchhHHHHHHHHHHh--cCCeEEEEc
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSD-FM---------EMFVGVGPSRVRNLFQEARQ--CAPSIIFID 425 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~-~~---------~~~vG~~~~~vr~lF~~A~~--~aP~ILfID 425 (811)
.|.-+||||+||+|||++|+.+++. ..++..+++. .+ ..-....-..+.+.+..+.. ....+|+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID 88 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID 88 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence 4667999999999999999999742 2222222211 00 00001111233444433322 335799999
Q ss_pred Ccchhhh
Q 047690 426 EIDAIGR 432 (811)
Q Consensus 426 EIDaL~~ 432 (811)
.|+.+..
T Consensus 89 sI~~l~~ 95 (220)
T TIGR01618 89 NISALQN 95 (220)
T ss_pred cHHHHHH
Confidence 9999865
No 271
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.67 E-value=0.00021 Score=70.88 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=23.3
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.+.-++++|+||+|||++++.+|..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 345568999999999999999999866
No 272
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.66 E-value=0.00023 Score=78.64 Aligned_cols=112 Identities=22% Similarity=0.232 Sum_probs=63.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh----hhcC------------chhHHHHHHHHHHhcCCeE
Q 047690 361 GALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM----FVGV------------GPSRVRNLFQEARQCAPSI 421 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~----~vG~------------~~~~vr~lF~~A~~~aP~I 421 (811)
-++++||||||||+||-.++.++ +.+.++++..+-.+. -.|. .+..+..+-..++...+++
T Consensus 57 iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~l 136 (325)
T cd00983 57 IIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDL 136 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCE
Confidence 37899999999999999887543 677888876432111 0111 1222222223345567899
Q ss_pred EEEcCcchhhhhcCCCCCCCCc--hHHHHHHHHHHHhhhcCCCCCcEEEEecC
Q 047690 422 IFIDEIDAIGRARGRGGFSGAN--DERESTLNQLLVEMDGFGTTAGVVVIAGT 472 (811)
Q Consensus 422 LfIDEIDaL~~~r~~~~~~~~~--~e~~~tLnqLL~emDg~~~~~~VIVIaaT 472 (811)
|+||-+-++.++..-.+..+.. ....+.+.+.|..+.......++.+|.+.
T Consensus 137 IVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tN 189 (325)
T cd00983 137 IVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFIN 189 (325)
T ss_pred EEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 9999999997532211111111 12234455666555554445566666653
No 273
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00047 Score=73.82 Aligned_cols=121 Identities=12% Similarity=0.046 Sum_probs=80.9
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeec------hhhhhh------h--h---cCchhHHHHHHHHHHhc--
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISG------SDFMEM------F--V---GVGPSRVRNLFQEARQC-- 417 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~------s~~~~~------~--v---G~~~~~vr~lF~~A~~~-- 417 (811)
.+|..+|++||+|+||..+|.++|..+-+.--.-.| ..+... + . ..+.+.+|++-+.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 357889999999999999999999865221000011 111100 0 0 12334566665543221
Q ss_pred ---CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeec
Q 047690 418 ---APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITI 494 (811)
Q Consensus 418 ---aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v 494 (811)
..-|++||++|.+. ....|.||..++. +..++++|..|+.++.+.|.+++ |+. .+.+
T Consensus 85 e~~~~KV~II~~ae~m~---------------~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~ 144 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN---------------KQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVV 144 (261)
T ss_pred hcCCCEEEEeccHhhhC---------------HHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeec
Confidence 23699999999982 3467888888886 67788899999999999999999 874 4566
Q ss_pred cCC
Q 047690 495 DKP 497 (811)
Q Consensus 495 ~~P 497 (811)
+.+
T Consensus 145 ~~~ 147 (261)
T PRK05818 145 LSK 147 (261)
T ss_pred CCh
Confidence 555
No 274
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.63 E-value=0.00089 Score=76.07 Aligned_cols=186 Identities=19% Similarity=0.207 Sum_probs=90.5
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeechhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhc
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES----GVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRAR 434 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 434 (811)
..++++.||+|||||+++.+++..+ | -.++.+.++..... ..+.. -....+|+|||+..+--.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~-------~~lg~--v~~~DlLI~DEvgylp~~- 275 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST-------RQIGL--VGRWDVVAFDEVATLKFA- 275 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------HHHhh--hccCCEEEEEcCCCCcCC-
Confidence 4579999999999999999988762 3 22233333221110 11111 123579999999775211
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhhc---------CCCCCcEEEEecCCCCcc-----------c-----chhhcCCCCcc
Q 047690 435 GRGGFSGANDERESTLNQLLVEMDG---------FGTTAGVVVIAGTNRPDI-----------L-----DKALLRPGRFD 489 (811)
Q Consensus 435 ~~~~~~~~~~e~~~tLnqLL~emDg---------~~~~~~VIVIaaTN~pd~-----------L-----DpALlRpGRFd 489 (811)
..++ .+.-+-.-|.. ...+.++++++-+|.+.. | |.|++. ||.
T Consensus 276 -------~~~~---~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~~v~~~~~~~~Lf~~lP~~~~DsAflD--RiH 343 (449)
T TIGR02688 276 -------KPKE---LIGILKNYMESGSFTRGDETKSSDASFVFLGNVPLTSEHMVKNSDLFSPLPEFMRDSAFLD--RIH 343 (449)
T ss_pred -------chHH---HHHHHHHHHHhCceeccceeeeeeeEEEEEcccCCcchhhcCcccccccCChhhhhhHHHH--hhh
Confidence 1122 22333333332 122345777787764211 2 334444 442
Q ss_pred ee---eeccCCCHHHH-------HHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHH-HHHHHHcCCCccC
Q 047690 490 RQ---ITIDKPDIKGR-------DQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEA-ALIAARGENSQVT 558 (811)
Q Consensus 490 r~---I~v~~Pd~~eR-------~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneA-al~Aar~~~~~It 558 (811)
-- .++|.-..+-. .+.|...++.+.-. +-...++.......+++.+|...+-... +++-..--+..++
T Consensus 344 ~yiPGWeipk~~~e~~t~~yGl~~DylsE~l~~lR~~-~~~~~~~~~~~l~~~~~~RD~~aV~kt~SgllKLL~P~~~~~ 422 (449)
T TIGR02688 344 GYLPGWEIPKIRKEMFSNGYGFVVDYFAEALRELRER-EYADIVDRHFSLSPNLNTRDVIAVKKTFSGLMKILFPHGTIT 422 (449)
T ss_pred ccCCCCcCccCCHHHcccCCcchHHHHHHHHHHHHhh-HHHHhhhhheecCCCcchhhHHHHHHHHHHHHHHhCCCCCCC
Confidence 11 12222221110 11122222221110 1111123344455677888887766543 2333334556688
Q ss_pred HHHHHHHHHHHh
Q 047690 559 MEHFEAAIDRVI 570 (811)
Q Consensus 559 ~ed~~~Al~rvi 570 (811)
.++++++++-.+
T Consensus 423 ~ee~~~~l~~Al 434 (449)
T TIGR02688 423 KEEFTECLEPAL 434 (449)
T ss_pred HHHHHHHHHHHH
Confidence 888888775544
No 275
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.62 E-value=0.0045 Score=70.61 Aligned_cols=123 Identities=19% Similarity=0.168 Sum_probs=75.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCC
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFS 440 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~ 440 (811)
-++|+||..||||++++.+.....-.+++++..|........ ......+..+.....+.||||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc----------
Confidence 689999999999999988888775546666665543221111 11222222222223479999999887
Q ss_pred CCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHH
Q 047690 441 GANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQ 504 (811)
Q Consensus 441 ~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~e 504 (811)
+.....+..+... ... ++++.+++...-....+-.-+||. ..+.+.+-+..|...
T Consensus 107 ---~~W~~~lk~l~d~---~~~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 ---PDWERALKYLYDR---GNL--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ---hhHHHHHHHHHcc---ccc--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 2355566665533 111 455555554433444444456895 577888888888764
No 276
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.60 E-value=9.7e-05 Score=81.30 Aligned_cols=162 Identities=21% Similarity=0.233 Sum_probs=90.9
Q ss_pred chHhHHHHHHHHHHhcCchhhh----hcC---CCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCe-EEeechhhhhh----
Q 047690 331 CDEAKQEIMEFVHFLKNPRKYE----DLG---AKIPKGALLVGPPGTGKTLLAKATAGESGVPF-LSISGSDFMEM---- 398 (811)
Q Consensus 331 ~eeak~eL~e~v~~Lk~p~~~~----~lg---~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpf-i~vs~s~~~~~---- 398 (811)
+..+.+.|..+.+.+..+..-. .+. ..+|+|+.|||+-|.|||+|.-..-..+..+- ..+....|+-.
T Consensus 30 Q~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~ 109 (367)
T COG1485 30 QPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQR 109 (367)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHH
Confidence 5566666666666443333222 133 33789999999999999999999888764432 33333344321
Q ss_pred ---hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCC-
Q 047690 399 ---FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNR- 474 (811)
Q Consensus 399 ---~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~- 474 (811)
..|.. .-+..+-....+ .-.||+|||++.= +-.-.-.+..|+.++= ..+|++++|+|.
T Consensus 110 l~~l~g~~-dpl~~iA~~~~~-~~~vLCfDEF~Vt------------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~ 171 (367)
T COG1485 110 LHTLQGQT-DPLPPIADELAA-ETRVLCFDEFEVT------------DIADAMILGRLLEALF----ARGVVLVATSNTA 171 (367)
T ss_pred HHHHcCCC-CccHHHHHHHHh-cCCEEEeeeeeec------------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCC
Confidence 22322 111111111111 2259999997541 1111335666666653 348999999995
Q ss_pred CcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCch
Q 047690 475 PDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSY 521 (811)
Q Consensus 475 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~ 521 (811)
|+.|=+ ++|.|.-.+| - .++|+.++.-+.++...|.
T Consensus 172 P~~LY~-----dGlqR~~FLP--~----I~li~~~~~v~~vD~~~DY 207 (367)
T COG1485 172 PDNLYK-----DGLQRERFLP--A----IDLIKSHFEVVNVDGPVDY 207 (367)
T ss_pred hHHhcc-----cchhHHhhHH--H----HHHHHHheEEEEecCCccc
Confidence 444422 2343333332 2 5678888887777776665
No 277
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.59 E-value=0.00019 Score=77.54 Aligned_cols=113 Identities=26% Similarity=0.434 Sum_probs=67.0
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcC----------CCeEEee-chhhhhhhhcC-------------chhHHHHHHHHHH
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESG----------VPFLSIS-GSDFMEMFVGV-------------GPSRVRNLFQEAR 415 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~g----------vpfi~vs-~s~~~~~~vG~-------------~~~~vr~lF~~A~ 415 (811)
++++|.||||+|||+|.+++++... .++..++ ..++...+.+. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 5799999999999999999999763 2232222 12332211111 1122345677777
Q ss_pred hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhh--------cCCCC
Q 047690 416 QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKAL--------LRPGR 487 (811)
Q Consensus 416 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpAL--------lRpGR 487 (811)
.+.|.||++||+-. ...+..++..+. .+..||++|+.++ +.... +..+-
T Consensus 192 ~~~P~villDE~~~-----------------~e~~~~l~~~~~-----~G~~vI~ttH~~~-~~~~~~r~~~~~l~~~~~ 248 (270)
T TIGR02858 192 SMSPDVIVVDEIGR-----------------EEDVEALLEALH-----AGVSIIATAHGRD-VEDLYKRPVFKELIENEA 248 (270)
T ss_pred hCCCCEEEEeCCCc-----------------HHHHHHHHHHHh-----CCCEEEEEechhH-HHHHHhChHHHHHHhcCc
Confidence 78999999999621 122444444442 3567888887543 32232 23445
Q ss_pred cceeeecc
Q 047690 488 FDRQITID 495 (811)
Q Consensus 488 Fdr~I~v~ 495 (811)
|++.+.+.
T Consensus 249 ~~r~i~L~ 256 (270)
T TIGR02858 249 FERYVVLS 256 (270)
T ss_pred eEEEEEEe
Confidence 77776664
No 278
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00052 Score=83.99 Aligned_cols=163 Identities=20% Similarity=0.297 Sum_probs=108.9
Q ss_pred cccccccc-hHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----------CCCeEEeec
Q 047690 324 YFRDVAGC-DEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSISG 392 (811)
Q Consensus 324 ~f~dV~G~-eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----------gvpfi~vs~ 392 (811)
.++-++|. ++-.+.+.+++. .. ..++-+|+|.||+|||.++.-+|+.. +..++.++.
T Consensus 184 kldPvigr~deeirRvi~iL~---Rr---------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 184 KLDPVIGRHDEEIRRVIEILS---RK---------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCCccCCchHHHHHHHHHHh---cc---------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 36778887 655555555443 22 22567999999999999999999854 345666666
Q ss_pred hhhh--hhhhcCchhHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEE
Q 047690 393 SDFM--EMFVGVGPSRVRNLFQEARQ-CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVI 469 (811)
Q Consensus 393 s~~~--~~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVI 469 (811)
..+. .++.|..+.+++.+...+.. ....||||||+|-+...... .-.....|- |..+- .+.++-+|
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~-------~~~~d~~nl-Lkp~L---~rg~l~~I 320 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN-------YGAIDAANL-LKPLL---ARGGLWCI 320 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc-------chHHHHHHh-hHHHH---hcCCeEEE
Confidence 5433 34677788999999998874 34569999999999654321 112222222 22222 23448889
Q ss_pred ecCCCCc-----ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhh
Q 047690 470 AGTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKK 512 (811)
Q Consensus 470 aaTN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~ 512 (811)
+||.... .-||++-| ||+ .+.++.|+...-..||+..-..
T Consensus 321 GatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 321 GATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred ecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 8876322 34899999 997 6778889887777777766555
No 279
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.57 E-value=0.00033 Score=73.06 Aligned_cols=113 Identities=18% Similarity=0.250 Sum_probs=61.5
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhh----hhhhcC---------------chhHHHHHHHHHH-
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFM----EMFVGV---------------GPSRVRNLFQEAR- 415 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~----~~~vG~---------------~~~~vr~lF~~A~- 415 (811)
..-++|+||||+|||++|..+|.+. +.+++++++..+. ...... .......++....
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 102 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRKAEK 102 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHHHHH
Confidence 3347899999999999999998744 7788888876221 111110 0011111122211
Q ss_pred --hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC
Q 047690 416 --QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN 473 (811)
Q Consensus 416 --~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN 473 (811)
...+++|+||-+.++.+..-.+ .....+..+.+.+++..+-.+....++.||.+..
T Consensus 103 ~~~~~~~lvVIDsi~al~~~~~~~--~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 103 LAKENVGLIVLDSATSLYRLELED--EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred HHHhcccEEEEeCcHHHhHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 1578999999999986542100 0112233344444444443333344566665543
No 280
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.56 E-value=0.00014 Score=89.27 Aligned_cols=204 Identities=18% Similarity=0.230 Sum_probs=122.2
Q ss_pred CccccccccchHhHHHHHHHHHHhcCch--hhhhcCCCCC-C-cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPR--KYEDLGAKIP-K-GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~--~~~~lg~~~p-k-GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
.....++.|....-..+.+.++..++++ .|...+.... + .+|++||||+|||+.|.++|.+.+..++..+.++..+
T Consensus 316 p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RS 395 (871)
T KOG1968|consen 316 PTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRS 395 (871)
T ss_pred cccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcccccc
Confidence 4455777777666556666555443332 2222111111 1 3699999999999999999999999999999887654
Q ss_pred hhhc-----C--chhHHHHHH---HHHHhc-CC-eEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCc
Q 047690 398 MFVG-----V--GPSRVRNLF---QEARQC-AP-SIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAG 465 (811)
Q Consensus 398 ~~vG-----~--~~~~vr~lF---~~A~~~-aP-~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~ 465 (811)
.... . +...+...| ...+.. .. -||++||+|.+.. ..+ ..-..+.+++. ...
T Consensus 396 k~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~dR--------g~v~~l~~l~~-------ks~ 459 (871)
T KOG1968|consen 396 KKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-EDR--------GGVSKLSSLCK-------KSS 459 (871)
T ss_pred ccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hhh--------hhHHHHHHHHH-------hcc
Confidence 3221 1 112233333 111111 12 3999999999854 111 12234445543 123
Q ss_pred EEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHH
Q 047690 466 VVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEA 545 (811)
Q Consensus 466 VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneA 545 (811)
+-+|+++|.-+.....-+. |-+..++|+.|+...+..-+...+.......+.+. ++.+...+ ++||++.++.-
T Consensus 460 ~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~-l~~~s~~~----~~DiR~~i~~l 532 (871)
T KOG1968|consen 460 RPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDV-LEEISKLS----GGDIRQIIMQL 532 (871)
T ss_pred CCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHH-HHHHHHhc----ccCHHHHHHHH
Confidence 3466677765544432222 44456999999999988888877766555544433 46666655 67998888765
Q ss_pred HHH
Q 047690 546 ALI 548 (811)
Q Consensus 546 al~ 548 (811)
...
T Consensus 533 q~~ 535 (871)
T KOG1968|consen 533 QFW 535 (871)
T ss_pred hhh
Confidence 443
No 281
>PHA00729 NTP-binding motif containing protein
Probab=97.49 E-value=0.00019 Score=75.42 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=22.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcC
Q 047690 361 GALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~g 384 (811)
.++|+|+||||||+||.+|+..++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999999875
No 282
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.0005 Score=77.46 Aligned_cols=109 Identities=19% Similarity=0.317 Sum_probs=62.5
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc----C-CCeEEeechhhh-------h---hhhcC------chhHHHHHHHHHHhc
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES----G-VPFLSISGSDFM-------E---MFVGV------GPSRVRNLFQEARQC 417 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~----g-vpfi~vs~s~~~-------~---~~vG~------~~~~vr~lF~~A~~~ 417 (811)
...++|+||+|+||||++..||..+ + ..+..+.+..+. . ...|. ....+...+.. ..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~--l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE--LR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH--hc
Confidence 4568999999999999999999763 3 244444443331 1 11121 11223333322 23
Q ss_pred CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCC-CCcEEEEecCCCCcccchhhc
Q 047690 418 APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGT-TAGVVVIAGTNRPDILDKALL 483 (811)
Q Consensus 418 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~-~~~VIVIaaTN~pd~LDpALl 483 (811)
..++|+||..... ..+ ..+.+.+..+..... ...++|+.+|+..+.++..+.
T Consensus 215 ~~DlVLIDTaG~~----------~~d----~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 215 NKHMVLIDTIGMS----------QRD----RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred CCCEEEEcCCCCC----------ccc----HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 4579999997322 111 234444555544332 345888888888877765544
No 283
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.48 E-value=0.00026 Score=79.80 Aligned_cols=74 Identities=24% Similarity=0.421 Sum_probs=53.1
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh------hhcC--------chhHHHHHHHHHHhcCCeE
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM------FVGV--------GPSRVRNLFQEARQCAPSI 421 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~------~vG~--------~~~~vr~lF~~A~~~aP~I 421 (811)
..-++|+|+||+|||+|+..+|... +.+++++++.+-.+. -.+. .+..+..+++.+....|.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~l 161 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDL 161 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcE
Confidence 3447899999999999999998754 467888876543221 1111 2234566777777788999
Q ss_pred EEEcCcchhhh
Q 047690 422 IFIDEIDAIGR 432 (811)
Q Consensus 422 LfIDEIDaL~~ 432 (811)
|+||+|..+..
T Consensus 162 VVIDSIq~l~~ 172 (372)
T cd01121 162 VIIDSIQTVYS 172 (372)
T ss_pred EEEcchHHhhc
Confidence 99999999854
No 284
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.48 E-value=0.00079 Score=69.77 Aligned_cols=138 Identities=17% Similarity=0.147 Sum_probs=70.5
Q ss_pred CCCc--EEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhh----hhhhcC---------------c----hhHHHH
Q 047690 358 IPKG--ALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFM----EMFVGV---------------G----PSRVRN 409 (811)
Q Consensus 358 ~pkG--vLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~----~~~vG~---------------~----~~~vr~ 409 (811)
+|+| ++|+|+||||||+++..+|.+. +.++++++..... ....+. . ...+..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQE 95 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHHH
Confidence 4444 8899999999999999998764 5677777653211 100000 0 011122
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc-----chhhcC
Q 047690 410 LFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL-----DKALLR 484 (811)
Q Consensus 410 lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L-----DpALlR 484 (811)
+..... ..+++|+||-+-++....... ..........+..++..|..+....++.||.+....... .|..-+
T Consensus 96 ~~~~~~-~~~~lvvIDsi~~l~~~~~~~--~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~ 172 (218)
T cd01394 96 TETFAD-EKVDLVVVDSATALYRLELGD--DDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGH 172 (218)
T ss_pred HHHHHh-cCCcEEEEechHHhhhHHhcC--ccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCCc
Confidence 222222 247899999999986422111 001112223344444334443344566666665433222 232100
Q ss_pred --CCCcceeeeccCCC
Q 047690 485 --PGRFDRQITIDKPD 498 (811)
Q Consensus 485 --pGRFdr~I~v~~Pd 498 (811)
....|..|.+....
T Consensus 173 ~~~~~~d~~i~l~~~~ 188 (218)
T cd01394 173 TLEHWSKVILRLEKLR 188 (218)
T ss_pred chhcceeEEEEEEEcC
Confidence 12446667777554
No 285
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.47 E-value=0.00017 Score=84.27 Aligned_cols=63 Identities=25% Similarity=0.403 Sum_probs=46.1
Q ss_pred ccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-CCCeEEeec
Q 047690 323 VYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-GVPFLSISG 392 (811)
Q Consensus 323 v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-gvpfi~vs~ 392 (811)
--|+|+.|++++++.+.+.+.. ... ++. ..+-++|.||||+|||+||++||..+ ..|++.+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~g------l~~-~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQG------LEE-KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHh------cCC-CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3599999999999999887732 111 111 12357899999999999999999865 346666644
No 286
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.47 E-value=0.0003 Score=81.26 Aligned_cols=74 Identities=23% Similarity=0.404 Sum_probs=54.5
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhh------hcC--------chhHHHHHHHHHHhcCCeE
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMF------VGV--------GPSRVRNLFQEARQCAPSI 421 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~------vG~--------~~~~vr~lF~~A~~~aP~I 421 (811)
..-+||+|+||+|||+|+..+|... +.++++++..+..+.. .|. .+..+..+++......|.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~l 159 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPDL 159 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCE
Confidence 3447899999999999999998754 6788888876543321 111 2234566777777778999
Q ss_pred EEEcCcchhhh
Q 047690 422 IFIDEIDAIGR 432 (811)
Q Consensus 422 LfIDEIDaL~~ 432 (811)
|+||+|..+..
T Consensus 160 VVIDSIq~l~~ 170 (446)
T PRK11823 160 VVIDSIQTMYS 170 (446)
T ss_pred EEEechhhhcc
Confidence 99999999864
No 287
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.46 E-value=0.0004 Score=68.57 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=33.4
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhc
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVG 401 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG 401 (811)
.+..++|+|+||||||++|+++|..++.+++.. .++.....|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~--d~~~~~~~g 44 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT--DHLIEARAG 44 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHHcC
Confidence 356799999999999999999999999988854 444444333
No 288
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.45 E-value=0.0019 Score=69.98 Aligned_cols=95 Identities=24% Similarity=0.270 Sum_probs=59.3
Q ss_pred ccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCc--
Q 047690 327 DVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVG-- 403 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~-- 403 (811)
.|.|+.-+++.+...+.- +.++.. +.|.-+=|+|++||||.+.++.||+.+-..- .-|.++..|+...
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p------~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G---l~S~~V~~fvat~hF 153 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNP------RKPLVLSFHGWTGTGKNYVAEIIAENLYRGG---LRSPFVHHFVATLHF 153 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCC------CCCeEEEecCCCCCchhHHHHHHHHHHHhcc---ccchhHHHhhhhccC
Confidence 478888888888776664 555532 2355566899999999999999998651110 1122333322210
Q ss_pred ----------hhHHHHHHHHHHhcCCeEEEEcCcchh
Q 047690 404 ----------PSRVRNLFQEARQCAPSIIFIDEIDAI 430 (811)
Q Consensus 404 ----------~~~vr~lF~~A~~~aP~ILfIDEIDaL 430 (811)
++-.+.+-..++.++-+|.++||+|.|
T Consensus 154 P~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 154 PHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 111122333455666789999999998
No 289
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.44 E-value=0.0001 Score=68.77 Aligned_cols=30 Identities=43% Similarity=0.825 Sum_probs=26.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEee
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSIS 391 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs 391 (811)
|+|+||||+||||+|+.||..++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 689999999999999999999987776543
No 290
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.42 E-value=0.00017 Score=73.95 Aligned_cols=124 Identities=21% Similarity=0.234 Sum_probs=59.7
Q ss_pred EEEEcCCCCCHHHHHHHH-HHh---cCCCeEEeechhhh-hh---hhcCc-------------hhHHHHHHHHHHhcCCe
Q 047690 362 ALLVGPPGTGKTLLAKAT-AGE---SGVPFLSISGSDFM-EM---FVGVG-------------PSRVRNLFQEARQCAPS 420 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAl-A~e---~gvpfi~vs~s~~~-~~---~vG~~-------------~~~vr~lF~~A~~~aP~ 420 (811)
.+++|.||+|||+.|-.. ... .|.+++. +...+. +. +.+.. ................+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 478999999999988665 432 3677665 433221 11 10000 00011111111111468
Q ss_pred EEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCC
Q 047690 421 IIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPD 498 (811)
Q Consensus 421 ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd 498 (811)
+|+|||++.+.+.+... .......+ +++.+ ....++-||.+|..+..||+.+++ +.+.++++..++
T Consensus 82 liviDEa~~~~~~r~~~-----~~~~~~~~-~~l~~----hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~~ 147 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK-----GKKVPEII-EFLAQ----HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKLD 147 (193)
T ss_dssp EEEETTGGGTSB---T------T----HHH-HGGGG----CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE--
T ss_pred EEEEECChhhcCCCccc-----cccchHHH-HHHHH----hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEeec
Confidence 99999999998876421 01112223 33322 234567888899999999999987 888888776553
No 291
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.41 E-value=0.00073 Score=69.75 Aligned_cols=103 Identities=24% Similarity=0.420 Sum_probs=58.8
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh-----cCCCe-------------EEeechhhhhhhhcC-----chhHHHHHHHHHHh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE-----SGVPF-------------LSISGSDFMEMFVGV-----GPSRVRNLFQEARQ 416 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e-----~gvpf-------------i~vs~s~~~~~~vG~-----~~~~vr~lF~~A~~ 416 (811)
+-++|+||+|+|||+|+|.++.. .|.++ ..++..+-+ ..+. ...++..+++.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l--~~~~s~~~~e~~~~~~iL~~~~~ 103 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDL--RDGISYFYAELRRLKEIVEKAKK 103 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhcc--ccccChHHHHHHHHHHHHHhccC
Confidence 45899999999999999999863 34332 111111111 1111 11456666666655
Q ss_pred cCCeEEEEcCcchhhhhcCCCCCCCCchH-HHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccc
Q 047690 417 CAPSIIFIDEIDAIGRARGRGGFSGANDE-RESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILD 479 (811)
Q Consensus 417 ~aP~ILfIDEIDaL~~~r~~~~~~~~~~e-~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LD 479 (811)
..|.+|++||.-+ +.+.. .......++..+.. .+..+|.+|+.++.+.
T Consensus 104 ~~p~llllDEp~~-----------glD~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~~ 152 (199)
T cd03283 104 GEPVLFLLDEIFK-----------GTNSRERQAASAAVLKFLKN----KNTIGIISTHDLELAD 152 (199)
T ss_pred CCCeEEEEecccC-----------CCCHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHHH
Confidence 5799999999622 22222 22333445555532 2456777777766543
No 292
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.39 E-value=0.0033 Score=72.37 Aligned_cols=192 Identities=16% Similarity=0.237 Sum_probs=96.3
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh-------h--------hhcC-ch----hHHHHHHHH
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME-------M--------FVGV-GP----SRVRNLFQE 413 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~-------~--------~vG~-~~----~~vr~lF~~ 413 (811)
..|.-++|+|++|+|||+++..+|..+ +..+..+++..+.. . +.+. .. ..+++.++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 357789999999999999999998765 56666666643311 0 1111 11 123444444
Q ss_pred HHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcce---
Q 047690 414 ARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDR--- 490 (811)
Q Consensus 414 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr--- 490 (811)
+... .+|+||..-.+ ..+ ...+.++-...+-..+..-++|+-++...+.++.+- +|..
T Consensus 173 ~~~~--DvVIIDTAGr~----------~~d---~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~----~F~~~l~ 233 (437)
T PRK00771 173 FKKA--DVIIVDTAGRH----------ALE---EDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAK----AFHEAVG 233 (437)
T ss_pred hhcC--CEEEEECCCcc----------cch---HHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHH----HHHhcCC
Confidence 4443 69999986333 111 222322222222222344566666655444443321 2322
Q ss_pred --eeeccCCCHHHHHH-HHHHHHh-hc---------cCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHH---------
Q 047690 491 --QITIDKPDIKGRDQ-IFQVYLK-KI---------KLDHEPSYYSQRLAALTPGFAGADIANVCNEAALI--------- 548 (811)
Q Consensus 491 --~I~v~~Pd~~eR~e-IL~~~l~-~~---------~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~--------- 548 (811)
.+-+..-|...|-. +|..... +. .++.-..++.+.++.+.-|+ .|+..|++.|...
T Consensus 234 i~gvIlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgm--gd~~~l~e~~~~~~~~~~~~~~ 311 (437)
T PRK00771 234 IGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGM--GDLESLLEKVEEALDEEEEEKD 311 (437)
T ss_pred CCEEEEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCC--CChHHHHHHHHHhhhHHHHHHH
Confidence 23344445444433 2222211 11 11111123346666666553 5777777654322
Q ss_pred HHHcCCCccCHHHHHHHHHHH
Q 047690 549 AARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 549 Aar~~~~~It~ed~~~Al~rv 569 (811)
+.+-.+...|.+||.+-++.+
T Consensus 312 ~~~~~~~~f~l~d~~~q~~~~ 332 (437)
T PRK00771 312 VEKMMKGKFTLKDMYKQLEAM 332 (437)
T ss_pred HHHHHcCCcCHHHHHHHHHHH
Confidence 111123457778887777665
No 293
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.38 E-value=0.00094 Score=70.16 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=30.1
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHh---cCCCeEEeech
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGE---SGVPFLSISGS 393 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e---~gvpfi~vs~s 393 (811)
|.+....++++|+||||||+|+..++.+ .+.++++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 4444556899999999999999999764 36777777753
No 294
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.37 E-value=0.00086 Score=70.76 Aligned_cols=73 Identities=22% Similarity=0.306 Sum_probs=44.7
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhh----hhhh--hcC---------------------c----h
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDF----MEMF--VGV---------------------G----P 404 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~----~~~~--vG~---------------------~----~ 404 (811)
..-++|+||||||||+++..++... +.+.++++..+- .... .|. + .
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 103 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKR 103 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHHH
Confidence 3458999999999999975554422 667777765321 1110 000 0 1
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhh
Q 047690 405 SRVRNLFQEARQCAPSIIFIDEIDAIG 431 (811)
Q Consensus 405 ~~vr~lF~~A~~~aP~ILfIDEIDaL~ 431 (811)
..+..+...+....|.+++|||+-.+.
T Consensus 104 ~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 104 KFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 233344445445568999999998864
No 295
>PRK07261 topology modulation protein; Provisional
Probab=97.36 E-value=0.00036 Score=70.22 Aligned_cols=34 Identities=26% Similarity=0.504 Sum_probs=29.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhh
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDF 395 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~ 395 (811)
|+|+|+||+||||||+.|+...+.|++..+.-.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 7899999999999999999999999887765433
No 296
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.35 E-value=0.00065 Score=65.02 Aligned_cols=37 Identities=38% Similarity=0.602 Sum_probs=30.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhh
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFV 400 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~v 400 (811)
++++||||+|||++|+.++...+ ...++..++.....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~ 38 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLA 38 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHc
Confidence 68999999999999999999988 55667666665443
No 297
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.30 E-value=0.004 Score=69.36 Aligned_cols=160 Identities=15% Similarity=0.225 Sum_probs=91.8
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh------h
Q 047690 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM------F 399 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~------~ 399 (811)
..|.+.+.+...|..++- +. ....|..+.|+|..|||||.+.|.+-+.++.|.+.++|-+...- .
T Consensus 6 ~~v~~Re~qi~~L~~Llg---~~------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLG---NN------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHhC---CC------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 356667777777776653 11 22468889999999999999999999999999999998665321 0
Q ss_pred ---h------c----CchhHHH---HHHHH--HHhc--CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc
Q 047690 400 ---V------G----VGPSRVR---NLFQE--ARQC--APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG 459 (811)
Q Consensus 400 ---v------G----~~~~~vr---~lF~~--A~~~--aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg 459 (811)
+ | .....+. .+|.+ +..+ ..-.|++|.+|.+-. .....++.++..-+-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD------------~~a~ll~~l~~L~el 144 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD------------MDAILLQCLFRLYEL 144 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc------------cchHHHHHHHHHHHH
Confidence 1 1 1112222 23333 2222 245788999999931 112334444433222
Q ss_pred CCCCCcEEEEecCCCCcccchhhcCCCCcc-eeeeccCCCHHHHHHHHHHH
Q 047690 460 FGTTAGVVVIAGTNRPDILDKALLRPGRFD-RQITIDKPDIKGRDQIFQVY 509 (811)
Q Consensus 460 ~~~~~~VIVIaaTN~pd~LDpALlRpGRFd-r~I~v~~Pd~~eR~eIL~~~ 509 (811)
... ..+.++...-..+ +--+.+-|-++ -.++||.|+.++.+.|+..-
T Consensus 145 ~~~-~~i~iils~~~~e--~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 145 LNE-PTIVIILSAPSCE--KQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred hCC-CceEEEEeccccH--HHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 222 2222222222111 11122233443 35899999999999887653
No 298
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.30 E-value=0.0013 Score=76.49 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=26.7
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
-++||+|.|||||+-+.|.+++-+...++..
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s~RAV~tT 513 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTSPRAVFTT 513 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcCcceeEec
Confidence 4699999999999999999999887666643
No 299
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.30 E-value=0.0015 Score=66.26 Aligned_cols=119 Identities=21% Similarity=0.270 Sum_probs=67.4
Q ss_pred CCCCCc--EEEEcCCCCCHHHHHHHHHHhcCC-------------CeEEeechhhhhhhh------cC------chhHHH
Q 047690 356 AKIPKG--ALLVGPPGTGKTLLAKATAGESGV-------------PFLSISGSDFMEMFV------GV------GPSRVR 408 (811)
Q Consensus 356 ~~~pkG--vLL~GPPGTGKT~LAkAlA~e~gv-------------pfi~vs~s~~~~~~v------G~------~~~~vr 408 (811)
..++.| +.|.||+|+|||||.+++....|. ++.++.-.++++.+- .. +..+.+
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qr 95 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQR 95 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHH
Confidence 344444 679999999999999999743321 122222112222211 00 113445
Q ss_pred HHHHHHHhcC--CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCC
Q 047690 409 NLFQEARQCA--PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPG 486 (811)
Q Consensus 409 ~lF~~A~~~a--P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpG 486 (811)
-.+..|.... |.++++||--+ +.+......+.+++.++. . .+..||.+|+.++.+ +
T Consensus 96 l~laral~~~~~p~llLlDEPt~-----------~LD~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~~-----~-- 153 (176)
T cd03238 96 VKLASELFSEPPGTLFILDEPST-----------GLHQQDINQLLEVIKGLI---D-LGNTVILIEHNLDVL-----S-- 153 (176)
T ss_pred HHHHHHHhhCCCCCEEEEeCCcc-----------cCCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHH-----H--
Confidence 5566666778 99999999633 345555556666665542 2 234566667765432 3
Q ss_pred CcceeeeccC
Q 047690 487 RFDRQITIDK 496 (811)
Q Consensus 487 RFdr~I~v~~ 496 (811)
.+|+.+.+..
T Consensus 154 ~~d~i~~l~~ 163 (176)
T cd03238 154 SADWIIDFGP 163 (176)
T ss_pred hCCEEEEECC
Confidence 4566666643
No 300
>PRK09354 recA recombinase A; Provisional
Probab=97.28 E-value=0.0013 Score=73.40 Aligned_cols=111 Identities=23% Similarity=0.220 Sum_probs=61.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh----hhcC------------chhHHHHHHHHHHhcCCeE
Q 047690 361 GALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM----FVGV------------GPSRVRNLFQEARQCAPSI 421 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~----~vG~------------~~~~vr~lF~~A~~~aP~I 421 (811)
-++|+||||||||+||-.++.++ +...++++...-.+. -.|. .+..+..+-...+...+.+
T Consensus 62 IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~l 141 (349)
T PRK09354 62 IVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDL 141 (349)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCE
Confidence 37899999999999999876543 777777776442111 0111 1122222222334567899
Q ss_pred EEEcCcchhhhhcCCCCCCCC--chHHHHHHHHHHHhhhcCCCCCcEEEEec
Q 047690 422 IFIDEIDAIGRARGRGGFSGA--NDERESTLNQLLVEMDGFGTTAGVVVIAG 471 (811)
Q Consensus 422 LfIDEIDaL~~~r~~~~~~~~--~~e~~~tLnqLL~emDg~~~~~~VIVIaa 471 (811)
|+||=+-++.+...-.+..+. .....+.+.+.|..+-..-...++.+|.+
T Consensus 142 IVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~t 193 (349)
T PRK09354 142 IVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFI 193 (349)
T ss_pred EEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 999999998753211111111 11223345555554444434556666665
No 301
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.26 E-value=0.00081 Score=66.92 Aligned_cols=103 Identities=19% Similarity=0.205 Sum_probs=62.8
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCC--CeEEeechhh--------hhhhhc-----CchhHHHHHHHHHHhcCCeEEEE
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGV--PFLSISGSDF--------MEMFVG-----VGPSRVRNLFQEARQCAPSIIFI 424 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gv--pfi~vs~s~~--------~~~~vG-----~~~~~vr~lF~~A~~~aP~ILfI 424 (811)
.-+.|.||+|+|||+|.+.+++.... --+.+++.+. ....++ .+..+.+-.+..|....|.++++
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~illl 106 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLIL 106 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEEE
Confidence 34789999999999999999986521 0122222111 111111 12234555677777788999999
Q ss_pred cCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 425 DEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 425 DEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
||-- .+.+......+.+++.++.. . +..+|.+|++++.
T Consensus 107 DEP~-----------~~LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~~ 144 (163)
T cd03216 107 DEPT-----------AALTPAEVERLFKVIRRLRA---Q-GVAVIFISHRLDE 144 (163)
T ss_pred ECCC-----------cCCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHH
Confidence 9962 34566666777777776632 2 3455556665443
No 302
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.0019 Score=73.22 Aligned_cols=131 Identities=13% Similarity=0.162 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhc-------CCCeEEeechhhh-------hhh---------hcCchhHHHHHHHHH
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGES-------GVPFLSISGSDFM-------EMF---------VGVGPSRVRNLFQEA 414 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~-------gvpfi~vs~s~~~-------~~~---------vG~~~~~vr~lF~~A 414 (811)
.|+-++|+||+|+||||++..+|..+ +..+..+++..+. ..| +......+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 36679999999999999999998754 3344444443321 111 112223344433333
Q ss_pred HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCC-CcEEEEecCCCCcccchhhcCCCC--ccee
Q 047690 415 RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTT-AGVVVIAGTNRPDILDKALLRPGR--FDRQ 491 (811)
Q Consensus 415 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~-~~VIVIaaTN~pd~LDpALlRpGR--Fdr~ 491 (811)
....+|+||.+.... .+.. .+..+...++..... ..++|+.+|.....+...+.+-.. ++ .
T Consensus 253 --~~~DlVLIDTaGr~~----------~~~~---~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~-~ 316 (388)
T PRK12723 253 --KDFDLVLVDTIGKSP----------KDFM---KLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK-T 316 (388)
T ss_pred --CCCCEEEEcCCCCCc----------cCHH---HHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-E
Confidence 335799999985441 1211 244444444443333 567888888877777755443111 22 3
Q ss_pred eeccCCCHHHHHH
Q 047690 492 ITIDKPDIKGRDQ 504 (811)
Q Consensus 492 I~v~~Pd~~eR~e 504 (811)
+-+...|...+..
T Consensus 317 ~I~TKlDet~~~G 329 (388)
T PRK12723 317 VIFTKLDETTCVG 329 (388)
T ss_pred EEEEeccCCCcch
Confidence 4455555544443
No 303
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.25 E-value=0.00092 Score=83.94 Aligned_cols=138 Identities=29% Similarity=0.383 Sum_probs=90.8
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh--hhc-----C--chhHHHHH-HHHHHhcCCeEEEEcCc
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM--FVG-----V--GPSRVRNL-FQEARQCAPSIIFIDEI 427 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~--~vG-----~--~~~~vr~l-F~~A~~~aP~ILfIDEI 427 (811)
+-+++||.|.||+|||.|+.|+|++.|-.++.|+.++-.+. .+| . ++=++++. |-.|.+. ..-|++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehh
Confidence 45789999999999999999999999999999998764322 111 1 22233332 4344443 358899998
Q ss_pred chhhhhcCCCCCCCCchHHHHHHHHHHH--------hhh-cCCCCCcEEEEecCCCCc------ccchhhcCCCCcceee
Q 047690 428 DAIGRARGRGGFSGANDERESTLNQLLV--------EMD-GFGTTAGVVVIAGTNRPD------ILDKALLRPGRFDRQI 492 (811)
Q Consensus 428 DaL~~~r~~~~~~~~~~e~~~tLnqLL~--------emD-g~~~~~~VIVIaaTN~pd------~LDpALlRpGRFdr~I 492 (811)
.-- ....-.-+|..|. ++| .|.-..+..|+||-|..+ .|+..++. ||. ++
T Consensus 1621 NLa------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV 1685 (4600)
T COG5271 1621 NLA------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VV 1685 (4600)
T ss_pred hhh------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eE
Confidence 543 1112223333332 122 123455788899888654 48999998 994 77
Q ss_pred eccCCCHHHHHHHHHHHHh
Q 047690 493 TIDKPDIKGRDQIFQVYLK 511 (811)
Q Consensus 493 ~v~~Pd~~eR~eIL~~~l~ 511 (811)
.++..+.++...|......
T Consensus 1686 ~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1686 KMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred EecccccchHHHHHHhhCC
Confidence 8888888777777766554
No 304
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.24 E-value=0.0014 Score=73.84 Aligned_cols=73 Identities=25% Similarity=0.391 Sum_probs=44.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcC-----CCeEEeechhh-------hhh---------hhcCchhHHH---HHHHHHHh-
Q 047690 362 ALLVGPPGTGKTLLAKATAGESG-----VPFLSISGSDF-------MEM---------FVGVGPSRVR---NLFQEARQ- 416 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~g-----vpfi~vs~s~~-------~~~---------~vG~~~~~vr---~lF~~A~~- 416 (811)
.||+||||+|||+|++.|++... +.++.+-..+. ... +......+++ .+++.|+.
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999998663 33222222221 111 1122233444 33444433
Q ss_pred ---cCCeEEEEcCcchhhhhc
Q 047690 417 ---CAPSIIFIDEIDAIGRAR 434 (811)
Q Consensus 417 ---~aP~ILfIDEIDaL~~~r 434 (811)
....+||||||+.+.+..
T Consensus 252 ~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHcCCCEEEEEEChHHHHHHH
Confidence 246799999999997654
No 305
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.23 E-value=0.0025 Score=72.89 Aligned_cols=137 Identities=25% Similarity=0.364 Sum_probs=68.8
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCchhHHHH-----HHHH--HH-hcCCeEEEEcCcchhh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRN-----LFQE--AR-QCAPSIIFIDEIDAIG 431 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~~~vr~-----lF~~--A~-~~aP~ILfIDEIDaL~ 431 (811)
-+|||-|.|||-|+-|.|-+-.-+.+-++. |+.. +.-.|.++.-+|+ ++-+ |. -...+|+.|||+|.+-
T Consensus 365 INVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SGKG--SSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMr 441 (729)
T KOG0481|consen 365 INVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SGKG--SSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMR 441 (729)
T ss_pred eeEEEecCCchhHHHHHHHHHhcCceEEEe-cCCC--cccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccC
Confidence 469999999999999999987755443332 1100 0001111111111 0000 00 0124699999999982
Q ss_pred hhcCCCCCCCCchHHH-HHHHHHHHhhhcCC--CCCcEEEEecCCCC-----------ccc--chhhcCCCCcceeeecc
Q 047690 432 RARGRGGFSGANDERE-STLNQLLVEMDGFG--TTAGVVVIAGTNRP-----------DIL--DKALLRPGRFDRQITID 495 (811)
Q Consensus 432 ~~r~~~~~~~~~~e~~-~tLnqLL~emDg~~--~~~~VIVIaaTN~p-----------d~L--DpALlRpGRFdr~I~v~ 495 (811)
..+. -+.++..+ +++. +-. .|.. -+++.-|+||.|.+ +++ -+.+++ |||..+-+.
T Consensus 442 ---e~DR-VAIHEAMEQQTIS-IAK--AGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVK 512 (729)
T KOG0481|consen 442 ---EDDR-VAIHEAMEQQTIS-IAK--AGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVK 512 (729)
T ss_pred ---chhh-hHHHHHHHhhhHH-Hhh--hcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEe
Confidence 1110 01122221 1111 100 1111 13456688888853 223 378888 999887776
Q ss_pred CCCHHHHHHHHHH
Q 047690 496 KPDIKGRDQIFQV 508 (811)
Q Consensus 496 ~Pd~~eR~eIL~~ 508 (811)
---.++|-..|..
T Consensus 513 D~h~~~~D~~lAk 525 (729)
T KOG0481|consen 513 DEHDEERDITLAK 525 (729)
T ss_pred ccCcchhhhHHHH
Confidence 5444444433333
No 306
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.22 E-value=0.0042 Score=64.15 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=28.2
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDF 395 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~ 395 (811)
+.-++++|+||+|||++|+.+|.+++.++ +..+|+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~ 37 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI--VLSGDY 37 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE--EehhHH
Confidence 34589999999999999999999988765 344443
No 307
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.22 E-value=0.0025 Score=68.23 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=22.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCC
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGV 385 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gv 385 (811)
-++|.||+|+|||+|++.+++....
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccc
Confidence 3899999999999999999987744
No 308
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.21 E-value=0.00044 Score=74.15 Aligned_cols=98 Identities=23% Similarity=0.323 Sum_probs=63.4
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC---eEEeec-hhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP---FLSISG-SDF 395 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp---fi~vs~-s~~ 395 (811)
....+++++.-.....+.+.+++...- +...+++++||+|+|||++++++..+.... ++.+.. .++
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 456788898877777777777665421 123479999999999999999999877433 343321 111
Q ss_pred hhh------hh-cCchhHHHHHHHHHHhcCCeEEEEcCc
Q 047690 396 MEM------FV-GVGPSRVRNLFQEARQCAPSIIFIDEI 427 (811)
Q Consensus 396 ~~~------~v-G~~~~~vr~lF~~A~~~aP~ILfIDEI 427 (811)
.-. +. ........+++..+.+..|++|+|+||
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEi 206 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEI 206 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCccccccc
Confidence 100 00 123446778888888899999999999
No 309
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.19 E-value=0.0019 Score=64.81 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
-++|+||+|||||+|.|++|..
T Consensus 31 ~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhc
Confidence 3899999999999999999984
No 310
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.19 E-value=0.002 Score=59.52 Aligned_cols=24 Identities=42% Similarity=0.527 Sum_probs=20.6
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
++++++||+|+|||+++-+++.++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999888887655
No 311
>PRK14532 adenylate kinase; Provisional
Probab=97.19 E-value=0.0027 Score=64.24 Aligned_cols=36 Identities=33% Similarity=0.539 Sum_probs=29.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
.++|.||||+||||+|+.||...+.++ ++..+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHH
Confidence 489999999999999999999988655 555565544
No 312
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.15 E-value=0.004 Score=68.40 Aligned_cols=160 Identities=21% Similarity=0.377 Sum_probs=93.7
Q ss_pred ccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHH-H--HhcCCCeEEeechhhhh-----
Q 047690 327 DVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKAT-A--GESGVPFLSISGSDFME----- 397 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAl-A--~e~gvpfi~vs~s~~~~----- 397 (811)
.+.|..+..+.+.+++.. .-. .-...+++.||.|+|||++.-.. + ++.+-.|+.+....++.
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 456777777777777764 111 12357999999999999876543 3 36677777665432210
Q ss_pred ----------------hhhcCchhHHHHHHHHHHhc-----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHh
Q 047690 398 ----------------MFVGVGPSRVRNLFQEARQC-----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVE 456 (811)
Q Consensus 398 ----------------~~vG~~~~~vr~lF~~A~~~-----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~e 456 (811)
+..|.....+..+....+.. .+.|.++||+|.+++.. ++++..-|-.
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------rQtllYnlfD 163 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------RQTLLYNLFD 163 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------hhHHHHHHHH
Confidence 12233334444444433321 23344457999985321 2333322222
Q ss_pred hhcCCCCCcEEEEecCCCCccc---chhhcCCCCccee-eeccCC-CHHHHHHHHHHHH
Q 047690 457 MDGFGTTAGVVVIAGTNRPDIL---DKALLRPGRFDRQ-ITIDKP-DIKGRDQIFQVYL 510 (811)
Q Consensus 457 mDg~~~~~~VIVIaaTN~pd~L---DpALlRpGRFdr~-I~v~~P-d~~eR~eIL~~~l 510 (811)
+.. ..+..|.||+.|.+.+.+ ...+.+ ||... |++..+ ...+-.++++..+
T Consensus 164 isq-s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 164 ISQ-SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHh-hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 221 245689999999887764 566777 99754 666543 5677778888776
No 313
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.14 E-value=0.0027 Score=66.23 Aligned_cols=112 Identities=17% Similarity=0.174 Sum_probs=58.6
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHH-----hcCCCeEEe--------------echhhhhhhhcCchhHHHHHHH-HHHhcC
Q 047690 359 PKGALLVGPPGTGKTLLAKATAG-----ESGVPFLSI--------------SGSDFMEMFVGVGPSRVRNLFQ-EARQCA 418 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~-----e~gvpfi~v--------------s~s~~~~~~vG~~~~~vr~lF~-~A~~~a 418 (811)
++.++|+||.|+|||++.|.++. ..|.++... ...+-+..........++.+.. .+....
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 35689999999999999999983 234333211 1111111111111222333222 223356
Q ss_pred CeEEEEcCcchhhhhcCCCCCCCCch-HHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhh
Q 047690 419 PSIIFIDEIDAIGRARGRGGFSGAND-ERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKAL 482 (811)
Q Consensus 419 P~ILfIDEIDaL~~~r~~~~~~~~~~-e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpAL 482 (811)
|++++|||+.. +.+. +....+..++..+-.. ......+|.+|+..+.+....
T Consensus 109 ~slvllDE~~~-----------gtd~~~~~~~~~ail~~l~~~-~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 109 RSLVLIDEFGK-----------GTDTEDGAGLLIATIEHLLKR-GPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CcEEEeccccC-----------CCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEcChHHHHHhhh
Confidence 89999999843 2222 2334444455554221 112346777888777665544
No 314
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.12 E-value=0.00063 Score=74.63 Aligned_cols=69 Identities=25% Similarity=0.364 Sum_probs=47.7
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc-----CCCeEEeec-hhh-------hhhhhcCchhHHHHHHHHHHhcCCeEEEEc
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES-----GVPFLSISG-SDF-------MEMFVGVGPSRVRNLFQEARQCAPSIIFID 425 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs~-s~~-------~~~~vG~~~~~vr~lF~~A~~~aP~ILfID 425 (811)
.+++|++||+|+|||++++++++.. +..++.+.- .++ +..........+.+++..+.++.|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 3579999999999999999999875 233333321 111 111112222267788889999999999999
Q ss_pred Cc
Q 047690 426 EI 427 (811)
Q Consensus 426 EI 427 (811)
|+
T Consensus 212 Ei 213 (299)
T TIGR02782 212 EV 213 (299)
T ss_pred cc
Confidence 98
No 315
>PRK06762 hypothetical protein; Provisional
Probab=97.12 E-value=0.0016 Score=64.56 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=33.1
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
|.-++|+|+||+||||+|+.++..++..++.++...+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~ 41 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD 41 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH
Confidence 5568999999999999999999998666777777666543
No 316
>PF14516 AAA_35: AAA-like domain
Probab=97.12 E-value=0.022 Score=63.43 Aligned_cols=169 Identities=18% Similarity=0.166 Sum_probs=90.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh-----------hh-------hc-------------CchhH
Q 047690 361 GALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME-----------MF-------VG-------------VGPSR 406 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~-----------~~-------vG-------------~~~~~ 406 (811)
-+.|.||..+|||+|...+...+ +...+++++..+-. .+ .+ .....
T Consensus 33 ~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~ 112 (331)
T PF14516_consen 33 YIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKIS 112 (331)
T ss_pred EEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhh
Confidence 47899999999999998887654 77788887754311 00 00 01123
Q ss_pred HHHHHHHH---HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC---CCCcE-EEEecCCCCcccc
Q 047690 407 VRNLFQEA---RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG---TTAGV-VVIAGTNRPDILD 479 (811)
Q Consensus 407 vr~lF~~A---~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~---~~~~V-IVIaaTN~pd~LD 479 (811)
....|+.. ....|-||+|||||.+.... ......+..|-...+.-. ....+ +|++.+..+....
T Consensus 113 ~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~---------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~ 183 (331)
T PF14516_consen 113 CTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP---------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIIL 183 (331)
T ss_pred HHHHHHHHHHhcCCCCEEEEEechhhhccCc---------chHHHHHHHHHHHHHhcccCcccceEEEEEecCccccccc
Confidence 34445432 22468899999999995321 111222222222222111 11222 3333332222222
Q ss_pred hhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHH
Q 047690 480 KALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNE 544 (811)
Q Consensus 480 pALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~Lvne 544 (811)
..-.+|=.+...|.++.-+.++-..+++.|- ....... ++.+-..|.|. |-=+..+|..
T Consensus 184 ~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~----~~~~~~~-~~~l~~~tgGh-P~Lv~~~~~~ 242 (331)
T PF14516_consen 184 DINQSPFNIGQPIELPDFTPEEVQELAQRYG----LEFSQEQ-LEQLMDWTGGH-PYLVQKACYL 242 (331)
T ss_pred CCCCCCcccccceeCCCCCHHHHHHHHHhhh----ccCCHHH-HHHHHHHHCCC-HHHHHHHHHH
Confidence 2223443445567777778888888777663 2222222 57777888775 4444555544
No 317
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.09 E-value=0.0017 Score=67.75 Aligned_cols=115 Identities=20% Similarity=0.235 Sum_probs=65.1
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhc---------CCCeEEeechhh------hhhh--hc---------------Cch
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGES---------GVPFLSISGSDF------MEMF--VG---------------VGP 404 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~---------gvpfi~vs~s~~------~~~~--vG---------------~~~ 404 (811)
+...-+.|+||||||||+|+..++... +...++++..+- .+.. .+ .+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCCH
Confidence 333447899999999999999997543 256777776441 1000 00 011
Q ss_pred hHHHHHH----HHHHhc-CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC
Q 047690 405 SRVRNLF----QEARQC-APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN 473 (811)
Q Consensus 405 ~~vr~lF----~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN 473 (811)
..+..++ ...... .+++|+||-|.++......+. ....++.+.+.+++..+..+....++.||.+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~--~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGR--GELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 1122222 223344 789999999999864211110 111344556667776666555555666666543
No 318
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.09 E-value=0.0025 Score=77.70 Aligned_cols=113 Identities=22% Similarity=0.225 Sum_probs=64.2
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHh---cCCCeEEeechhhhh----hhhcC------------chhHHHHHHHHHHhcCC
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGE---SGVPFLSISGSDFME----MFVGV------------GPSRVRNLFQEARQCAP 419 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e---~gvpfi~vs~s~~~~----~~vG~------------~~~~vr~lF~~A~~~aP 419 (811)
..-++|+||||||||+|+..++.. .+.+.++++..+-.. .-.|. .+..+..+-...+...+
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~ 139 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGAL 139 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence 344789999999999999765443 366777776543221 00111 11111222222344578
Q ss_pred eEEEEcCcchhhhhcCCCCCCCCc--hHHHHHHHHHHHhhhcCCCCCcEEEEec
Q 047690 420 SIIFIDEIDAIGRARGRGGFSGAN--DERESTLNQLLVEMDGFGTTAGVVVIAG 471 (811)
Q Consensus 420 ~ILfIDEIDaL~~~r~~~~~~~~~--~e~~~tLnqLL~emDg~~~~~~VIVIaa 471 (811)
.+|+||-|.++..+..-.+..+.. ....+.++++|..|..+....++.+|.+
T Consensus 140 ~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~T 193 (790)
T PRK09519 140 DIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFI 193 (790)
T ss_pred eEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 999999999998532211111111 2234455677776666655667777765
No 319
>PRK10536 hypothetical protein; Provisional
Probab=97.08 E-value=0.0027 Score=68.05 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=32.3
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHh
Q 047690 324 YFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 324 ~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e 382 (811)
.+.-|.+.......+...+. +. .-++++||+|||||+||.+++-+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~---~~-----------~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIE---SK-----------QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHh---cC-----------CeEEEECCCCCCHHHHHHHHHHH
Confidence 34456666666666665443 11 24899999999999999999885
No 320
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.08 E-value=0.0015 Score=67.79 Aligned_cols=115 Identities=21% Similarity=0.236 Sum_probs=65.9
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhc---C------CCeEEeechhhh------hh--hhc---------------Cch
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGES---G------VPFLSISGSDFM------EM--FVG---------------VGP 404 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~---g------vpfi~vs~s~~~------~~--~vG---------------~~~ 404 (811)
....-+.|+||||+|||+|+..+|... + ..+++++..+-. .. ..+ ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCCH
Confidence 333447899999999999999998753 3 566777664311 00 000 111
Q ss_pred hHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC
Q 047690 405 SRVRNLFQEAR----QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN 473 (811)
Q Consensus 405 ~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN 473 (811)
..+..++.... ...+++|+||-|..+......+. ....++.+.+.+++..|..+....++.||.+..
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~--~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGR--GMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCC--chHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 22223333322 34678999999998865321110 012344456677777666665555666665543
No 321
>PRK13949 shikimate kinase; Provisional
Probab=97.08 E-value=0.0027 Score=63.85 Aligned_cols=32 Identities=44% Similarity=0.632 Sum_probs=29.2
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEee
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSIS 391 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs 391 (811)
+.|+|+|+||+|||++++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35899999999999999999999999988765
No 322
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.08 E-value=0.00095 Score=68.70 Aligned_cols=66 Identities=26% Similarity=0.438 Sum_probs=42.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCC----CeEEeec-hhhhh---------hhhcCchhHHHHHHHHHHhcCCeEEEEcCc
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGV----PFLSISG-SDFME---------MFVGVGPSRVRNLFQEARQCAPSIIFIDEI 427 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gv----pfi~vs~-s~~~~---------~~vG~~~~~vr~lF~~A~~~aP~ILfIDEI 427 (811)
++++||+|+||||+++++++.... .++.+.. .++.. .-++.....+.+.+..+....|.+|++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 689999999999999999887642 2222211 11110 011222334556666777778999999998
No 323
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.07 E-value=0.00093 Score=67.93 Aligned_cols=69 Identities=25% Similarity=0.408 Sum_probs=45.3
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcC--CCeEEeech-hhh-------hh------hhcCchhHHHHHHHHHHhcCCeEE
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESG--VPFLSISGS-DFM-------EM------FVGVGPSRVRNLFQEARQCAPSII 422 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~g--vpfi~vs~s-~~~-------~~------~vG~~~~~vr~lF~~A~~~aP~IL 422 (811)
...++|.||+|+|||++++++++... ...+.+... ++. .. ..+.....+.+++..+.+..|.+|
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 34689999999999999999998752 122222111 110 00 001122356777778888899999
Q ss_pred EEcCc
Q 047690 423 FIDEI 427 (811)
Q Consensus 423 fIDEI 427 (811)
+++|+
T Consensus 105 ~igEi 109 (186)
T cd01130 105 IVGEV 109 (186)
T ss_pred EEEcc
Confidence 99998
No 324
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.0058 Score=69.21 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=54.3
Q ss_pred hHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhh----h---h--
Q 047690 332 DEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFM----E---M-- 398 (811)
Q Consensus 332 eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~----~---~-- 398 (811)
+++++.+.+.+.. +..+..+ ...|+-++|+||+|+||||++..||..+ +..+..+++..+. + .
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ya 292 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHh
Confidence 4555555555433 3322111 1235779999999999999999999765 4455555553221 1 1
Q ss_pred -------hhcCchhHHHHHHHHHHh-cCCeEEEEcCc
Q 047690 399 -------FVGVGPSRVRNLFQEARQ-CAPSIIFIDEI 427 (811)
Q Consensus 399 -------~vG~~~~~vr~lF~~A~~-~aP~ILfIDEI 427 (811)
++...+..+.+.+..++. ....+||||-.
T Consensus 293 e~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTa 329 (436)
T PRK11889 293 KTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTA 329 (436)
T ss_pred hhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 112345556666665553 23578999875
No 325
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.03 E-value=0.0014 Score=66.08 Aligned_cols=27 Identities=44% Similarity=0.785 Sum_probs=22.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc---CCCe
Q 047690 361 GALLVGPPGTGKTLLAKATAGES---GVPF 387 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~---gvpf 387 (811)
.++|+|+||+||||+++.++.++ ++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 37999999999999999999887 5554
No 326
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.02 E-value=0.0092 Score=65.29 Aligned_cols=80 Identities=18% Similarity=0.338 Sum_probs=49.5
Q ss_pred CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCC---------C--
Q 047690 418 APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRP---------G-- 486 (811)
Q Consensus 418 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRp---------G-- 486 (811)
.+-||||||+|.+-+ + .+.++|..+.-+-...++++|.+.++ +.|..++... |
T Consensus 172 ~~iViiIDdLDR~~~-----------~----~i~~~l~~ik~~~~~~~i~~Il~~D~-~~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSP-----------E----EIVELLEAIKLLLDFPNIIFILAFDP-EILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred ceEEEEEcchhcCCc-----------H----HHHHHHHHHHHhcCCCCeEEEEEecH-HHHHHHHHhhcCcccccccHHH
Confidence 366999999999821 1 23344444444434467777777663 3333333221 0
Q ss_pred ----CcceeeeccCCCHHHHHHHHHHHHhhc
Q 047690 487 ----RFDRQITIDKPDIKGRDQIFQVYLKKI 513 (811)
Q Consensus 487 ----RFdr~I~v~~Pd~~eR~eIL~~~l~~~ 513 (811)
-|+..+.+|.|+..+...++...+...
T Consensus 236 yLeKiiq~~~~lP~~~~~~~~~~~~~~~~~~ 266 (325)
T PF07693_consen 236 YLEKIIQVPFSLPPPSPSDLERYLNELLESL 266 (325)
T ss_pred HHHhhcCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 356678999999988888888776543
No 327
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.02 E-value=0.0012 Score=64.12 Aligned_cols=39 Identities=31% Similarity=0.617 Sum_probs=31.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVG 401 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG 401 (811)
+|+|+|+||+|||++|+.+|..++.+++.. .++.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~--d~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDL--DELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEc--hHHHHHHcC
Confidence 479999999999999999999999988754 355444443
No 328
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.01 E-value=0.0018 Score=75.00 Aligned_cols=73 Identities=22% Similarity=0.354 Sum_probs=51.7
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhh------hcC--------chhHHHHHHHHHHhcCCeEE
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMF------VGV--------GPSRVRNLFQEARQCAPSII 422 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~------vG~--------~~~~vr~lF~~A~~~aP~IL 422 (811)
.-+||+|+||+|||+|+..++... +.+++++++.+-.+.. .|. .+..+..+...+.+..|.+|
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~~v 174 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQAC 174 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCcEE
Confidence 347899999999999999987754 4678888875433221 111 12235566666677789999
Q ss_pred EEcCcchhhh
Q 047690 423 FIDEIDAIGR 432 (811)
Q Consensus 423 fIDEIDaL~~ 432 (811)
+||.|..+..
T Consensus 175 VIDSIq~l~~ 184 (454)
T TIGR00416 175 VIDSIQTLYS 184 (454)
T ss_pred EEecchhhcc
Confidence 9999999853
No 329
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.00 E-value=0.0031 Score=61.55 Aligned_cols=100 Identities=23% Similarity=0.237 Sum_probs=56.7
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCC--eEEeechhhhhhhh-cCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCC
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVP--FLSISGSDFMEMFV-GVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGR 436 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvp--fi~vs~s~~~~~~v-G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~ 436 (811)
..+.|.||+|+|||+|++++++..... -+.++...-+.... -.+..+-+-.+..|....|.++++||-.+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~------- 99 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTN------- 99 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc-------
Confidence 347899999999999999999975210 11111100000000 01123344445666677899999999633
Q ss_pred CCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 437 GGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 437 ~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
+.+......+..++.++. ..+|.+|+.++.
T Consensus 100 ----~LD~~~~~~l~~~l~~~~-------~til~~th~~~~ 129 (144)
T cd03221 100 ----HLDLESIEALEEALKEYP-------GTVILVSHDRYF 129 (144)
T ss_pred ----CCCHHHHHHHHHHHHHcC-------CEEEEEECCHHH
Confidence 344455555666665541 245556665443
No 330
>PRK14974 cell division protein FtsY; Provisional
Probab=97.00 E-value=0.0061 Score=68.00 Aligned_cols=35 Identities=31% Similarity=0.354 Sum_probs=27.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeech
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGS 393 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s 393 (811)
|.-++|+||||+||||++..+|..+ +..+..+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 6678999999999999888888754 5555555544
No 331
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.99 E-value=0.0011 Score=69.95 Aligned_cols=55 Identities=27% Similarity=0.437 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 408 RNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 408 r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
|..++.|....|.|||+||= .+|.++-....+++|+..+.. .-+..+|.-|+..+
T Consensus 153 RvaLARAialdPell~~DEP-----------tsGLDPI~a~~~~~LI~~L~~---~lg~T~i~VTHDl~ 207 (263)
T COG1127 153 RVALARAIALDPELLFLDEP-----------TSGLDPISAGVIDELIRELND---ALGLTVIMVTHDLD 207 (263)
T ss_pred HHHHHHHHhcCCCEEEecCC-----------CCCCCcchHHHHHHHHHHHHH---hhCCEEEEEECChH
Confidence 56677777888999999994 346667777788888887764 23445555566543
No 332
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.99 E-value=0.0014 Score=77.43 Aligned_cols=55 Identities=31% Similarity=0.436 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 406 RVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 406 ~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
+-|-.|....-++|.++||||.-+ +.+++.+..+.+++++ .-.++.||..++++.
T Consensus 521 qQRlafARilL~kP~~v~LDEATs-----------ALDe~~e~~l~q~l~~-----~lp~~tvISV~Hr~t 575 (604)
T COG4178 521 QQRLAFARLLLHKPKWVFLDEATS-----------ALDEETEDRLYQLLKE-----ELPDATVISVGHRPT 575 (604)
T ss_pred HHHHHHHHHHHcCCCEEEEecchh-----------ccChHHHHHHHHHHHh-----hCCCCEEEEeccchh
Confidence 345667777888999999999732 4456666777777655 123567777777643
No 333
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.98 E-value=0.0025 Score=66.22 Aligned_cols=134 Identities=23% Similarity=0.346 Sum_probs=63.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh-hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCC
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM-FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFS 440 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~-~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~ 440 (811)
++|+||+|||||.+|-++|+..|.|++..+.-.+... -+|.+.....+ + +..+ =+|+||-..-
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~e-l----~~~~-RiyL~~r~l~---------- 67 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSE-L----KGTR-RIYLDDRPLS---------- 67 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGG-G----TT-E-EEES----GG----------
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHH-H----cccc-eeeecccccc----------
Confidence 5899999999999999999999999999987655433 33332111111 1 1112 3788874332
Q ss_pred CCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCC---CCcc-eeeeccCCCHHHHHHHHHHHHhhc
Q 047690 441 GANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRP---GRFD-RQITIDKPDIKGRDQIFQVYLKKI 513 (811)
Q Consensus 441 ~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRp---GRFd-r~I~v~~Pd~~eR~eIL~~~l~~~ 513 (811)
.+.-........|+..++......++|+=+.+.. .|..-..++ -.|. .+..++.||.+.-..-.+...++.
T Consensus 68 ~G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSIS--Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~M 142 (233)
T PF01745_consen 68 DGIINAEEAHERLISEVNSYSAHGGLILEGGSIS--LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQM 142 (233)
T ss_dssp G-S--HHHHHHHHHHHHHTTTTSSEEEEEE--HH--HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhccccCceEEeCchHH--HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHh
Confidence 1122334456667777777777555655555431 222222221 0222 245677888766555555555443
No 334
>PRK13948 shikimate kinase; Provisional
Probab=96.97 E-value=0.0024 Score=65.13 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=34.0
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhc
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVG 401 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG 401 (811)
.+..|+|.|.+|+|||++++.+|..++.+|+..+ .+++...|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 4578999999999999999999999999998554 34444333
No 335
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.97 E-value=0.0021 Score=78.07 Aligned_cols=70 Identities=30% Similarity=0.376 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcC
Q 047690 405 SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLR 484 (811)
Q Consensus 405 ~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlR 484 (811)
.+-|-++..|--..|.||++||. .++.+.+.++.+.+-|.++.. +..+|..|+|+.. .+
T Consensus 614 QrQrlalARaLl~~P~ILlLDEa-----------TSaLD~~sE~~I~~~L~~~~~-----~~T~I~IaHRl~t-----i~ 672 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEA-----------TSALDPETEAIILQNLLQILQ-----GRTVIIIAHRLST-----IR 672 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCc-----------ccccCHhHHHHHHHHHHHHhc-----CCeEEEEEccchH-----hh
Confidence 45556666676788999999996 235567777777777777653 2345556676443 33
Q ss_pred CCCcceeeeccCC
Q 047690 485 PGRFDRQITIDKP 497 (811)
Q Consensus 485 pGRFdr~I~v~~P 497 (811)
++|+.+.++..
T Consensus 673 --~adrIiVl~~G 683 (709)
T COG2274 673 --SADRIIVLDQG 683 (709)
T ss_pred --hccEEEEccCC
Confidence 57777766543
No 336
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.97 E-value=0.0027 Score=65.52 Aligned_cols=109 Identities=26% Similarity=0.382 Sum_probs=60.6
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhh-------hhh---hc------C---ch-hHHHHHHHHHH
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFM-------EMF---VG------V---GP-SRVRNLFQEAR 415 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~-------~~~---vG------~---~~-~~vr~lF~~A~ 415 (811)
|+-++|+||+|+||||.+-.+|..+ +..+-.+++..+. ..| .+ . .+ ..+++.++.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5668999999999999888888754 4555555443221 111 11 1 11 23445555555
Q ss_pred hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccch
Q 047690 416 QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDK 480 (811)
Q Consensus 416 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDp 480 (811)
...-.+|+||=.-. +..+.+....+..++..+ .+..-++|+.+|...+.++.
T Consensus 81 ~~~~D~vlIDT~Gr----------~~~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~~ 132 (196)
T PF00448_consen 81 KKGYDLVLIDTAGR----------SPRDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLEQ 132 (196)
T ss_dssp HTTSSEEEEEE-SS----------SSTHHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHHH
T ss_pred hcCCCEEEEecCCc----------chhhHHHHHHHHHHhhhc---CCccceEEEecccChHHHHH
Confidence 54557999987521 122233334444554444 34455677777777666663
No 337
>PRK13947 shikimate kinase; Provisional
Probab=96.96 E-value=0.00074 Score=67.05 Aligned_cols=31 Identities=32% Similarity=0.454 Sum_probs=28.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEee
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSIS 391 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs 391 (811)
+|+|.|+||||||++++.+|..++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999997644
No 338
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.95 E-value=0.0019 Score=72.08 Aligned_cols=67 Identities=22% Similarity=0.378 Sum_probs=44.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCC----CeEEee-chhhh---------hhhhcCchhHHHHHHHHHHhcCCeEEEEcC
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGV----PFLSIS-GSDFM---------EMFVGVGPSRVRNLFQEARQCAPSIIFIDE 426 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gv----pfi~vs-~s~~~---------~~~vG~~~~~vr~lF~~A~~~aP~ILfIDE 426 (811)
.+|++||+|+||||+++++.+...- .++.+. ..++. ..-+|.......+.+..+....|.+|++||
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vgE 203 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIGE 203 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEeC
Confidence 4789999999999999999986642 233331 11211 001222223456677777888999999999
Q ss_pred c
Q 047690 427 I 427 (811)
Q Consensus 427 I 427 (811)
+
T Consensus 204 i 204 (343)
T TIGR01420 204 M 204 (343)
T ss_pred C
Confidence 8
No 339
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.0025 Score=63.79 Aligned_cols=103 Identities=27% Similarity=0.354 Sum_probs=59.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCC--eEEeechhh--------hhh--hh---------------cCchhHHHHHHH
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVP--FLSISGSDF--------MEM--FV---------------GVGPSRVRNLFQ 412 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvp--fi~vs~s~~--------~~~--~v---------------G~~~~~vr~lF~ 412 (811)
.-+.|.||+|+|||+|.+.+++..... -+.+++... ... |+ -.+..+-+-.+.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~la 108 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAIA 108 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHHH
Confidence 347899999999999999999965210 111222111 000 00 001122333455
Q ss_pred HHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 413 EARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 413 ~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
.|....|.+|++||-- .+.+......+.+++.++. . +..+|.+|+.++.+
T Consensus 109 ~al~~~p~llllDEP~-----------~gLD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 158 (171)
T cd03228 109 RALLRDPPILILDEAT-----------SALDPETEALILEALRALA---K--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHhcCCCEEEEECCC-----------cCCCHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 6666789999999952 2445555666666666653 1 24566667765544
No 340
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.94 E-value=0.0053 Score=64.02 Aligned_cols=97 Identities=23% Similarity=0.294 Sum_probs=55.9
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeechhhh----hh----------h--------hc-------
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSISGSDFM----EM----------F--------VG------- 401 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~s~~~----~~----------~--------vG------- 401 (811)
|.+...-+|++||||||||+|+..++.+. +-++++++..+-. +. + ..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 44444558999999999999999876433 7888888753211 11 0 00
Q ss_pred ---Cc-hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh
Q 047690 402 ---VG-PSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD 458 (811)
Q Consensus 402 ---~~-~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD 458 (811)
.. ..-+..+.+......+++++||-+..+ ... .........+..+...+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l-~~~------~~~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSAL-LLY------DDPEELRRFLRALIKFLK 148 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH-TTS------SSGGGHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH-hhc------CCHHHHHHHHHHHHHHHH
Confidence 01 111233334445567899999999999 211 123344455666665553
No 341
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.92 E-value=0.0038 Score=66.80 Aligned_cols=38 Identities=29% Similarity=0.283 Sum_probs=28.7
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeec
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSISG 392 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~ 392 (811)
|.....-++|.||||+|||+++..+|..+ +.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 33334457899999999999999887653 677777775
No 342
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.92 E-value=0.0035 Score=64.54 Aligned_cols=97 Identities=22% Similarity=0.353 Sum_probs=52.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhh----hhhhcCchhHHHHHHHHHH---------hcCCeEEEE
Q 047690 361 GALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFM----EMFVGVGPSRVRNLFQEAR---------QCAPSIIFI 424 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~----~~~vG~~~~~vr~lF~~A~---------~~aP~ILfI 424 (811)
-++|.||||||||++++.++..+ +..++.+..+.-. ..-.+.....+..++.... .....+|+|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 47889999999999999987543 6667666543221 1111222223333322211 122369999
Q ss_pred cCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCC
Q 047690 425 DEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNR 474 (811)
Q Consensus 425 DEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~ 474 (811)
||+-.+. ...+..++..... ....+++++-.+.
T Consensus 100 DEasmv~---------------~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 100 DEASMVD---------------SRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp SSGGG-B---------------HHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred ecccccC---------------HHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 9997772 2345555555443 2456888886664
No 343
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.91 E-value=0.0089 Score=63.17 Aligned_cols=40 Identities=28% Similarity=0.411 Sum_probs=29.8
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHh---cCCCeEEeechh
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGE---SGVPFLSISGSD 394 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e---~gvpfi~vs~s~ 394 (811)
|......+|++||||||||+||..++.+ .|.+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 4444556899999999999999876553 377887776543
No 344
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.90 E-value=0.0046 Score=64.90 Aligned_cols=38 Identities=29% Similarity=0.322 Sum_probs=29.4
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeec
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSISG 392 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~ 392 (811)
|.....-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 44444458899999999999999886643 778888874
No 345
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.90 E-value=0.0034 Score=60.28 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=40.1
Q ss_pred cccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 326 RDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
..|.|+.-|.+.+...+.. +.++. -+.|.-+-|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3689999999998887764 55542 1234445689999999999999999974
No 346
>PRK03839 putative kinase; Provisional
Probab=96.90 E-value=0.00079 Score=67.73 Aligned_cols=30 Identities=30% Similarity=0.597 Sum_probs=27.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEee
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSIS 391 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs 391 (811)
|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 799999999999999999999999987653
No 347
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.0055 Score=64.30 Aligned_cols=69 Identities=28% Similarity=0.435 Sum_probs=45.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc--------CCCeEEeec-hhhhhhhhcC-------------chhHHHHHHHHHHhcC
Q 047690 361 GALLVGPPGTGKTLLAKATAGES--------GVPFLSISG-SDFMEMFVGV-------------GPSRVRNLFQEARQCA 418 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~--------gvpfi~vs~-s~~~~~~vG~-------------~~~~vr~lF~~A~~~a 418 (811)
+.|+.|||||||||+.|-+|.-+ ...+..++- +++..-..|. ..-+-..+....+.+.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 57999999999999999999854 223444443 2222211111 1122344566678899
Q ss_pred CeEEEEcCcch
Q 047690 419 PSIIFIDEIDA 429 (811)
Q Consensus 419 P~ILfIDEIDa 429 (811)
|.|+++|||..
T Consensus 219 PEViIvDEIGt 229 (308)
T COG3854 219 PEVIIVDEIGT 229 (308)
T ss_pred CcEEEEecccc
Confidence 99999999944
No 348
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.89 E-value=0.0022 Score=65.12 Aligned_cols=103 Identities=18% Similarity=0.124 Sum_probs=57.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCC--CeEEeechhh--hhhhh-cCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcC
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGV--PFLSISGSDF--MEMFV-GVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARG 435 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gv--pfi~vs~s~~--~~~~v-G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~ 435 (811)
-+.|.||+|+|||||++.+++.... =-+.+++..+ ..... -.+..+.|-.+..|....|.++++||--+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts------ 100 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA------ 100 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc------
Confidence 4789999999999999999986421 0112221110 00000 11223445556666677899999999632
Q ss_pred CCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 436 RGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 436 ~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
+.+......+..++.++. ...+..||.+|+..+.
T Consensus 101 -----~LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~ 134 (177)
T cd03222 101 -----YLDIEQRLNAARAIRRLS---EEGKKTALVVEHDLAV 134 (177)
T ss_pred -----cCCHHHHHHHHHHHHHHH---HcCCCEEEEEECCHHH
Confidence 345555555555555542 1222345556665443
No 349
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.89 E-value=0.0023 Score=71.23 Aligned_cols=69 Identities=19% Similarity=0.388 Sum_probs=47.2
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCC--CeEEee-chhhh--------hhh-----hcCchhHHHHHHHHHHhcCCeEE
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGV--PFLSIS-GSDFM--------EMF-----VGVGPSRVRNLFQEARQCAPSII 422 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gv--pfi~vs-~s~~~--------~~~-----vG~~~~~vr~lF~~A~~~aP~IL 422 (811)
.+++|++|++|+|||++++++.....- .++.+. ..++. ..+ .+...-...+++..+.+..|..|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 468999999999999999999987632 233321 11111 000 11122356788889999999999
Q ss_pred EEcCc
Q 047690 423 FIDEI 427 (811)
Q Consensus 423 fIDEI 427 (811)
++.|+
T Consensus 240 ivGEi 244 (332)
T PRK13900 240 IVGEL 244 (332)
T ss_pred EEEec
Confidence 99998
No 350
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.89 E-value=0.0066 Score=62.81 Aligned_cols=125 Identities=26% Similarity=0.359 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCchhHHHHHHHHH
Q 047690 335 KQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEA 414 (811)
Q Consensus 335 k~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A 414 (811)
+.++...|....+| |.+...-++|.|+-|+|||++.+.|+.+ ++.-+.... .....+.. .
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~------~~kd~~~~----l 93 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF------DDKDFLEQ----L 93 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC------CCcHHHHH----H
Confidence 56666677665555 4555667889999999999999999665 221111110 01111111 1
Q ss_pred HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHh-hhcCCC---------CCcEEEEecCCCCccc-chhhc
Q 047690 415 RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVE-MDGFGT---------TAGVVVIAGTNRPDIL-DKALL 483 (811)
Q Consensus 415 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~e-mDg~~~---------~~~VIVIaaTN~pd~L-DpALl 483 (811)
..+ -|+.|||++.+.++ ....+..+++. .+.+.. ....++|+|||..+-| |+.=-
T Consensus 94 ~~~--~iveldEl~~~~k~------------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGn 159 (198)
T PF05272_consen 94 QGK--WIVELDELDGLSKK------------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGN 159 (198)
T ss_pred HHh--HheeHHHHhhcchh------------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCC
Confidence 111 48999999988421 12355555544 222211 1247889999987755 44455
Q ss_pred CCCCcceeeeccC
Q 047690 484 RPGRFDRQITIDK 496 (811)
Q Consensus 484 RpGRFdr~I~v~~ 496 (811)
| || ..|.+..
T Consensus 160 R--Rf-~~v~v~~ 169 (198)
T PF05272_consen 160 R--RF-WPVEVSK 169 (198)
T ss_pred e--EE-EEEEEcC
Confidence 6 77 3444443
No 351
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.88 E-value=0.0084 Score=60.50 Aligned_cols=96 Identities=18% Similarity=0.196 Sum_probs=55.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhh-----hhh---hh---------cCchhHHHHHHHHHHhcCCeEEEE
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDF-----MEM---FV---------GVGPSRVRNLFQEARQCAPSIIFI 424 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~-----~~~---~v---------G~~~~~vr~lF~~A~~~aP~ILfI 424 (811)
+|++|++|+|||++|..++...+.+.+++....- ... +. .+....+.+.+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 5899999999999999999887778877754322 111 11 111223444332221 4679999
Q ss_pred cCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc
Q 047690 425 DEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG 459 (811)
Q Consensus 425 DEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg 459 (811)
|-+..+..+--..+...........+..|+..+..
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~ 114 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN 114 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc
Confidence 99999876543211000002223445556666553
No 352
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.88 E-value=0.0049 Score=65.49 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=29.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh
Q 047690 362 ALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME 397 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~ 397 (811)
|+|+|+||+|||++|++++..+ +.+++.++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 6899999999999999999876 56777777654433
No 353
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.87 E-value=0.0081 Score=60.62 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=55.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh-----hhh---h---------cCchhHHHHHHHHHHhcCCeEEE
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM-----EMF---V---------GVGPSRVRNLFQEARQCAPSIIF 423 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~-----~~~---v---------G~~~~~vr~lF~~A~~~aP~ILf 423 (811)
-+|+.|+||+|||++|..++.+.+.+++++...... ... . -+....+..++... ...+.+|+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 379999999999999999999988887777654321 110 0 00111233333221 12356899
Q ss_pred EcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc
Q 047690 424 IDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG 459 (811)
Q Consensus 424 IDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg 459 (811)
||-+..+..+.-.. .........+..++..+..
T Consensus 82 ID~Lt~~~~n~l~~---~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 82 VDCLTTWVTNLLFE---EGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred ehhHHHHHHHHhcc---cchHHHHHHHHHHHHHHHc
Confidence 99999986544210 0012234455566666554
No 354
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.86 E-value=0.0062 Score=61.26 Aligned_cols=103 Identities=20% Similarity=0.248 Sum_probs=60.0
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCC--CeEEeechhhh------hh---hhc------------------CchhHHHHH
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGV--PFLSISGSDFM------EM---FVG------------------VGPSRVRNL 410 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gv--pfi~vs~s~~~------~~---~vG------------------~~~~~vr~l 410 (811)
.-+.|.||+|+|||+|++.+++.... --+.+++.+.. .. |+. .+..+.+-.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~ 108 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLA 108 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHH
Confidence 34789999999999999999986421 11222221110 00 000 012334455
Q ss_pred HHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 411 FQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 411 F~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
+..|....|.++++||--+ +.+......+.+++.++. . +..||.+|+.++.+
T Consensus 109 laral~~~p~~lllDEP~~-----------~LD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 160 (178)
T cd03247 109 LARILLQDAPIVLLDEPTV-----------GLDPITERQLLSLIFEVL---K--DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHhcCCCEEEEECCcc-----------cCCHHHHHHHHHHHHHHc---C--CCEEEEEecCHHHH
Confidence 6666677899999999633 445555666777776653 1 23455566655433
No 355
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.86 E-value=0.0057 Score=65.40 Aligned_cols=58 Identities=24% Similarity=0.412 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 405 SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 405 ~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
+.-|-+++.|-...|.++++||= +.+.+...+..+..+|.++.. . +..|+..|.....
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP-----------~~gvD~~~~~~i~~lL~~l~~---e-g~tIl~vtHDL~~ 201 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEP-----------FTGVDVAGQKEIYDLLKELRQ---E-GKTVLMVTHDLGL 201 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCC-----------cccCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCcHH
Confidence 34466777888888999999994 345666677788888888753 3 6677777776543
No 356
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.014 Score=66.68 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=60.3
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeechhhh-------hhh---hcC---chhHHHHHHHHHHhcCCeE
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES----GVPFLSISGSDFM-------EMF---VGV---GPSRVRNLFQEARQCAPSI 421 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~s~~~-------~~~---vG~---~~~~vr~lF~~A~~~aP~I 421 (811)
+.-++|+||+|+||||++..+|... +..+..+++..+. ..| .+. ....+..+...+......+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4458899999999999999999754 4445555543322 111 111 1122344444444445578
Q ss_pred EEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhc
Q 047690 422 IFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALL 483 (811)
Q Consensus 422 LfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALl 483 (811)
|+||=.-.. ..+...-..+..++.......+...++|+.+|...+.+...+.
T Consensus 303 VLIDTaGr~----------~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 303 ILIDTAGYS----------HRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred EEEeCCCCC----------ccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 888853111 1122222223333322221123346778888877766655544
No 357
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.86 E-value=0.0042 Score=62.22 Aligned_cols=101 Identities=29% Similarity=0.426 Sum_probs=59.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCC--CeEEeechhh--------hhh--hh---------------cCchhHHHHHHHH
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGV--PFLSISGSDF--------MEM--FV---------------GVGPSRVRNLFQE 413 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gv--pfi~vs~s~~--------~~~--~v---------------G~~~~~vr~lF~~ 413 (811)
-+.|.||+|+|||+|++.+++.... --+.+++.++ ... |+ -.+..+.|-.+..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~ 109 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLAR 109 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHHH
Confidence 3789999999999999999986421 0111221110 000 00 0112334555667
Q ss_pred HHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 414 ARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 414 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
|....|.++++||-- .+.+......+.+++..+.. .+..+|.+|+..+
T Consensus 110 al~~~p~~lllDEPt-----------~~LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~ 157 (173)
T cd03246 110 ALYGNPRILVLDEPN-----------SHLDVEGERALNQAIAALKA----AGATRIVIAHRPE 157 (173)
T ss_pred HHhcCCCEEEEECCc-----------cccCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 777889999999963 24455556666677766532 2345566666544
No 358
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.86 E-value=0.002 Score=71.48 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=47.1
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc-----CCCeEEee-chhhhhh------hhcCchhHHHHHHHHHHhcCCeEEEEcC
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES-----GVPFLSIS-GSDFMEM------FVGVGPSRVRNLFQEARQCAPSIIFIDE 426 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs-~s~~~~~------~vG~~~~~vr~lF~~A~~~aP~ILfIDE 426 (811)
.+++|++|++|+|||+++++++... +..++.+. ..++.-. +.....-...+++..+.++.|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4579999999999999999999875 22333332 1121100 1111223467788888899999999999
Q ss_pred c
Q 047690 427 I 427 (811)
Q Consensus 427 I 427 (811)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 8
No 359
>PRK14527 adenylate kinase; Provisional
Probab=96.85 E-value=0.0085 Score=61.02 Aligned_cols=32 Identities=41% Similarity=0.560 Sum_probs=27.5
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEE
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESGVPFLS 389 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~ 389 (811)
.|.-++++||||+|||++|+.+|.+.+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 45668999999999999999999999876554
No 360
>PRK04296 thymidine kinase; Provisional
Probab=96.84 E-value=0.0036 Score=64.02 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=41.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc---CCCeEEeech----hhh---hhhhcCc-----hhHHHHHHHHHH--hcCCeEEEE
Q 047690 362 ALLVGPPGTGKTLLAKATAGES---GVPFLSISGS----DFM---EMFVGVG-----PSRVRNLFQEAR--QCAPSIIFI 424 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s----~~~---~~~vG~~-----~~~vr~lF~~A~--~~aP~ILfI 424 (811)
.|++||||+|||+++..++..+ +..++.+..+ ... ....|.. .....+++..++ ...+.+|+|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvviI 84 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVLI 84 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEEE
Confidence 6899999999999998887765 5566655431 110 0111211 112344444443 245679999
Q ss_pred cCcchh
Q 047690 425 DEIDAI 430 (811)
Q Consensus 425 DEIDaL 430 (811)
||++.+
T Consensus 85 DEaq~l 90 (190)
T PRK04296 85 DEAQFL 90 (190)
T ss_pred EccccC
Confidence 999655
No 361
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.005 Score=60.48 Aligned_cols=105 Identities=30% Similarity=0.452 Sum_probs=61.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCC--eEEeechhhhh-------hhhc-----CchhHHHHHHHHHHhcCCeEEEEc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVP--FLSISGSDFME-------MFVG-----VGPSRVRNLFQEARQCAPSIIFID 425 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvp--fi~vs~s~~~~-------~~vG-----~~~~~vr~lF~~A~~~aP~ILfID 425 (811)
.-+.|.||+|+|||+|++++++..... -+.+++..... ..++ .+..+.+-.+..+....|.++++|
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 357899999999999999999976321 12233221110 1111 112334444666666778999999
Q ss_pred CcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccc
Q 047690 426 EIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILD 479 (811)
Q Consensus 426 EIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LD 479 (811)
|... +.+......+.+++.++.. . +..+|.+|+..+.++
T Consensus 106 Ep~~-----------~lD~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 106 EPTS-----------GLDPASRERLLELLRELAE---E-GRTVIIVTHDPELAE 144 (157)
T ss_pred CCCc-----------CCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHH
Confidence 9743 3344445566666665432 2 234566667655444
No 362
>PRK05973 replicative DNA helicase; Provisional
Probab=96.84 E-value=0.007 Score=64.32 Aligned_cols=34 Identities=35% Similarity=0.319 Sum_probs=27.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeech
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES---GVPFLSISGS 393 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s 393 (811)
.-+||.|+||+|||+|+-.++.+. |.++++++..
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 347899999999999998877644 7777777754
No 363
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.84 E-value=0.078 Score=58.60 Aligned_cols=133 Identities=16% Similarity=0.214 Sum_probs=69.4
Q ss_pred HHHHHHHHHh--c-CCeEEEEcCcchhhhhcCCC--CCCCCchHHHHHHHHHHHhhhcCCC-CCcEEE--EecCCC---C
Q 047690 407 VRNLFQEARQ--C-APSIIFIDEIDAIGRARGRG--GFSGANDERESTLNQLLVEMDGFGT-TAGVVV--IAGTNR---P 475 (811)
Q Consensus 407 vr~lF~~A~~--~-aP~ILfIDEIDaL~~~r~~~--~~~~~~~e~~~tLnqLL~emDg~~~-~~~VIV--IaaTN~---p 475 (811)
+..++++... . .|.++-||++.++.....-. .....+...-.....|+..+.+-.. ..+.+| +++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 3444444432 2 47788999999998653211 1111233333444444444333222 334444 566542 2
Q ss_pred c--ccchhhcCCCC------cc-------------eeeeccCCCHHHHHHHHHHHHhhccCCC--CCchhhhHHHhhCCC
Q 047690 476 D--ILDKALLRPGR------FD-------------RQITIDKPDIKGRDQIFQVYLKKIKLDH--EPSYYSQRLAALTPG 532 (811)
Q Consensus 476 d--~LDpALlRpGR------Fd-------------r~I~v~~Pd~~eR~eIL~~~l~~~~l~~--~~d~~l~~LA~~t~G 532 (811)
. .++.++....- |. ..|.++..+.+|-..+++.+....-+.. ......+.+...+ |
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s-~ 300 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSS-N 300 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhc-C
Confidence 2 45555554211 11 1578888999999999999887654443 2222223344333 3
Q ss_pred CcHHHHHH
Q 047690 533 FAGADIAN 540 (811)
Q Consensus 533 fSgaDL~~ 540 (811)
..++++.+
T Consensus 301 GNp~el~k 308 (309)
T PF10236_consen 301 GNPRELEK 308 (309)
T ss_pred CCHHHhcc
Confidence 46666643
No 364
>PRK00625 shikimate kinase; Provisional
Probab=96.83 E-value=0.001 Score=67.29 Aligned_cols=31 Identities=35% Similarity=0.501 Sum_probs=28.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEee
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSIS 391 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs 391 (811)
.|+|+|.||+|||++++.+|..++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999998765
No 365
>PRK13946 shikimate kinase; Provisional
Probab=96.83 E-value=0.0023 Score=64.89 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=30.7
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEee
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSIS 391 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs 391 (811)
.++.|+|+|+||||||++++.+|..++.||+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3567999999999999999999999999998665
No 366
>PRK10867 signal recognition particle protein; Provisional
Probab=96.82 E-value=0.03 Score=64.57 Aligned_cols=71 Identities=24% Similarity=0.347 Sum_probs=45.2
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeechhhhhh----------------hh---cCchh-HHHHHHH
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSISGSDFMEM----------------FV---GVGPS-RVRNLFQ 412 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~s~~~~~----------------~v---G~~~~-~vr~lF~ 412 (811)
..|.-++++||+|+||||++..+|..+ +..+..+++..+... |. +..+. -.++...
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 447779999999999999777777643 667777777533211 11 11122 2234555
Q ss_pred HHHhcCCeEEEEcCc
Q 047690 413 EARQCAPSIIFIDEI 427 (811)
Q Consensus 413 ~A~~~aP~ILfIDEI 427 (811)
.++.....+|+||=.
T Consensus 178 ~a~~~~~DvVIIDTa 192 (433)
T PRK10867 178 EAKENGYDVVIVDTA 192 (433)
T ss_pred HHHhcCCCEEEEeCC
Confidence 566656678998875
No 367
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.81 E-value=0.0092 Score=62.88 Aligned_cols=69 Identities=26% Similarity=0.330 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCC
Q 047690 406 RVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRP 485 (811)
Q Consensus 406 ~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRp 485 (811)
+-|-.+..|..+.|.||+-||= ....+.+....+-.++.++.. ..+..||..|+ |+.+..
T Consensus 148 qQRVAIARAL~~~P~iilADEP-----------TgnLD~~t~~~V~~ll~~~~~---~~g~tii~VTH-----d~~lA~- 207 (226)
T COG1136 148 QQRVAIARALINNPKIILADEP-----------TGNLDSKTAKEVLELLRELNK---ERGKTIIMVTH-----DPELAK- 207 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCc-----------cccCChHHHHHHHHHHHHHHH---hcCCEEEEEcC-----CHHHHH-
Confidence 3455666677788999999993 223345555566666666542 33456666777 455555
Q ss_pred CCcceeeecc
Q 047690 486 GRFDRQITID 495 (811)
Q Consensus 486 GRFdr~I~v~ 495 (811)
++||+|++.
T Consensus 208 -~~dr~i~l~ 216 (226)
T COG1136 208 -YADRVIELK 216 (226)
T ss_pred -hCCEEEEEe
Confidence 788888765
No 368
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.0055 Score=62.36 Aligned_cols=34 Identities=35% Similarity=0.657 Sum_probs=27.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
.++|.||||+||||+|+.||+. .++..++-.++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHh
Confidence 4799999999999999999999 556666655543
No 369
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.81 E-value=0.0069 Score=61.56 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 047690 362 ALLVGPPGTGKTLLAKATA 380 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA 380 (811)
++|+||.|+|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 370
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.81 E-value=0.0066 Score=60.57 Aligned_cols=98 Identities=33% Similarity=0.471 Sum_probs=57.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCC-----------CeEEeech-hh-----hhhh----hc--CchhHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGV-----------PFLSISGS-DF-----MEMF----VG--VGPSRVRNLFQEARQC 417 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gv-----------pfi~vs~s-~~-----~~~~----vG--~~~~~vr~lF~~A~~~ 417 (811)
-+.|.||+|+|||+|++.+++.... .+.++... .+ .+.. .. .+..+.|-.+..|...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999986521 01111100 00 0110 00 1123445556666677
Q ss_pred CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 418 APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 418 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
.|.++++||-.+ +.+......+.+++.++ +..+|.+|++++
T Consensus 109 ~p~~lllDEPt~-----------~LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 109 KPKFVFLDEATS-----------ALDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred CCCEEEEECCcc-----------ccCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 899999999633 34555566666666654 134555666543
No 371
>PRK13695 putative NTPase; Provisional
Probab=96.80 E-value=0.0086 Score=59.99 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
++|+|++|+|||+|++.+++++
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999988764
No 372
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.80 E-value=0.0023 Score=70.89 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=46.8
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc-----CCCeEEee-chhhh---hh---hhcCchhHHHHHHHHHHhcCCeEEEEcC
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES-----GVPFLSIS-GSDFM---EM---FVGVGPSRVRNLFQEARQCAPSIIFIDE 426 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs-~s~~~---~~---~vG~~~~~vr~lF~~A~~~aP~ILfIDE 426 (811)
.++++++|++|+|||+++++++.+. ...++.+. ..++. .. +.....-.+.+++..+.++.|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4579999999999999999999863 12233221 11111 00 1111233578889999999999999999
Q ss_pred c
Q 047690 427 I 427 (811)
Q Consensus 427 I 427 (811)
+
T Consensus 228 i 228 (319)
T PRK13894 228 V 228 (319)
T ss_pred c
Confidence 8
No 373
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.79 E-value=0.0029 Score=69.60 Aligned_cols=71 Identities=23% Similarity=0.428 Sum_probs=46.9
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhcCC--CeEEeec-hhhh-------hhh-----hcCchhHHHHHHHHHHhcCCeE
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGESGV--PFLSISG-SDFM-------EMF-----VGVGPSRVRNLFQEARQCAPSI 421 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~gv--pfi~vs~-s~~~-------~~~-----vG~~~~~vr~lF~~A~~~aP~I 421 (811)
+...+++++||+|+|||++++++++.... ..+.+.- .++. ..+ .+...-.+.+++..+.+..|.+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ 221 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR 221 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence 34568999999999999999999987632 2222211 1110 000 0111234677888888899999
Q ss_pred EEEcCc
Q 047690 422 IFIDEI 427 (811)
Q Consensus 422 LfIDEI 427 (811)
|++||+
T Consensus 222 ii~gE~ 227 (308)
T TIGR02788 222 IILGEL 227 (308)
T ss_pred EEEecc
Confidence 999998
No 374
>PLN02200 adenylate kinase family protein
Probab=96.78 E-value=0.0016 Score=68.99 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=33.9
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
..+.|.-++|.||||||||++|+.+|..++.+ .+++++++..
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 45566778999999999999999999998865 5777776543
No 375
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.77 E-value=0.0012 Score=66.35 Aligned_cols=35 Identities=23% Similarity=0.468 Sum_probs=28.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
|+|+||||+||||+|+.||...++ ..++.++++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHHH
Confidence 689999999999999999999975 45566665543
No 376
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0026 Score=64.21 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=29.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEee
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSIS 391 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs 391 (811)
..++|+|++|+||||+.|++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46899999999999999999999999998654
No 377
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.0011 Score=64.99 Aligned_cols=35 Identities=40% Similarity=0.750 Sum_probs=30.0
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
-+||++|-||||||+++..||...+.+++.+ ++++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~i--sd~v 42 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEI--SDLV 42 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEeh--hhHH
Confidence 3699999999999999999999999888765 4543
No 378
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.72 E-value=0.0013 Score=66.10 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=31.8
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
+-++|+|+||+|||++|++++.+++.+++.++...+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 35899999999999999999999988888776655543
No 379
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.71 E-value=0.0044 Score=66.44 Aligned_cols=32 Identities=47% Similarity=0.755 Sum_probs=24.8
Q ss_pred hhcCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 352 EDLGAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 352 ~~lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.+...+|+| +-|.||.|||||||.|++++-+
T Consensus 19 ~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 19 DDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred ecceEEecCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3444555655 6789999999999999999843
No 380
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.70 E-value=0.0099 Score=61.76 Aligned_cols=33 Identities=42% Similarity=0.772 Sum_probs=27.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
|+++||||+|||++|+.||...+++.+. ..+++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~ 35 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDML 35 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccH
Confidence 7999999999999999999999866655 44444
No 381
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.69 E-value=0.0053 Score=66.23 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=55.9
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCc-EEEEcCCCCCHHHHHHHHHHhcC---CCeEEee-chhhhh
Q 047690 323 VYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKG-ALLVGPPGTGKTLLAKATAGESG---VPFLSIS-GSDFME 397 (811)
Q Consensus 323 v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkG-vLL~GPPGTGKT~LAkAlA~e~g---vpfi~vs-~s~~~~ 397 (811)
.+++++.=.++..+.+.+++. .++| ++++||+|+|||++++++..... ..++.+. ..++.-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~--------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE--------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 456676544555555544442 1234 78999999999999999977653 2344442 112110
Q ss_pred h-----hhc-CchhHHHHHHHHHHhcCCeEEEEcCc
Q 047690 398 M-----FVG-VGPSRVRNLFQEARQCAPSIIFIDEI 427 (811)
Q Consensus 398 ~-----~vG-~~~~~vr~lF~~A~~~aP~ILfIDEI 427 (811)
. .+. .......++...+.+..|++|+|+||
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEi 158 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEI 158 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccC
Confidence 0 011 11124567777788889999999998
No 382
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.69 E-value=0.0015 Score=62.65 Aligned_cols=30 Identities=37% Similarity=0.680 Sum_probs=27.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEee
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSIS 391 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs 391 (811)
|.|+|+||||||++|+.||..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998765
No 383
>PRK06217 hypothetical protein; Validated
Probab=96.67 E-value=0.0016 Score=65.90 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=27.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEee
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSIS 391 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs 391 (811)
.|+|.|+||+||||+|++|+..++.|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 384
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.66 E-value=0.0054 Score=60.28 Aligned_cols=66 Identities=24% Similarity=0.371 Sum_probs=42.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhhh---cCc----hhHHHHHHHHHHh--cCCeEEEEcCc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMFV---GVG----PSRVRNLFQEARQ--CAPSIIFIDEI 427 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~v---G~~----~~~vr~lF~~A~~--~aP~ILfIDEI 427 (811)
++|+|+||+|||++|+.++..+ +.+.+.++...+..... +.. ...++.+...++. .+.+++++|-.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~ 79 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFI 79 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccC
Confidence 6899999999999999999987 66777777665543211 111 1223333333332 23467888754
No 385
>PRK13764 ATPase; Provisional
Probab=96.66 E-value=0.0028 Score=75.37 Aligned_cols=68 Identities=21% Similarity=0.333 Sum_probs=41.8
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcC---CCeEEee-chhh-----hhhhhcCchhHHHHHHHHHHhcCCeEEEEcCc
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESG---VPFLSIS-GSDF-----MEMFVGVGPSRVRNLFQEARQCAPSIIFIDEI 427 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~g---vpfi~vs-~s~~-----~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEI 427 (811)
.+++|++||||+||||++++++..+. ..+.++. ..++ +..|... ......+...+....|.+|++||+
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEi 333 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEM 333 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCC
Confidence 46899999999999999999998764 2232321 1121 1111100 011233334445678999999998
No 386
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.66 E-value=0.0062 Score=62.92 Aligned_cols=22 Identities=50% Similarity=0.687 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999987
No 387
>PHA02624 large T antigen; Provisional
Probab=96.65 E-value=0.0049 Score=72.75 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=66.3
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcC-
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARG- 435 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~- 435 (811)
+..+.+||+||||||||+|+++|++.++...+.|+++.-... |...-....-+++||++-.-+-...
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~ 496 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKD 496 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccccc
Confidence 333489999999999999999999999766777876542211 2211111124788888743221000
Q ss_pred CCCCCCCchHHHHHHHHHHHhhhcCCC-------CCc-----EEEEecCCCCcccchhhcCCCCcceeeecc
Q 047690 436 RGGFSGANDERESTLNQLLVEMDGFGT-------TAG-----VVVIAGTNRPDILDKALLRPGRFDRQITID 495 (811)
Q Consensus 436 ~~~~~~~~~e~~~tLnqLL~emDg~~~-------~~~-----VIVIaaTN~pd~LDpALlRpGRFdr~I~v~ 495 (811)
-....+.+ -+..|-..+||..+ ... =-.|.|||. ..|+..+.- ||..++.|.
T Consensus 497 Lp~G~~~d-----Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~ 560 (647)
T PHA02624 497 LPSGQGMN-----NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFK 560 (647)
T ss_pred CCcccccc-----hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhcccc
Confidence 00000111 12233444555410 000 024556664 567777777 898888775
No 388
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.65 E-value=0.0064 Score=62.53 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=19.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHH
Q 047690 361 GALLVGPPGTGKTLLAKATAG 381 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~ 381 (811)
-++|+||.|+|||++.+.++.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEEECCCCCccHHHHHHHHH
Confidence 489999999999999999983
No 389
>PRK14531 adenylate kinase; Provisional
Probab=96.64 E-value=0.0019 Score=65.51 Aligned_cols=35 Identities=34% Similarity=0.621 Sum_probs=29.0
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
.-++++||||+|||++++.+|...+.+.+. +.+++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 458999999999999999999999877654 55554
No 390
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.63 E-value=0.0089 Score=61.44 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=18.9
Q ss_pred cEEEEcCCCCCHHHHHHHHH
Q 047690 361 GALLVGPPGTGKTLLAKATA 380 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA 380 (811)
-++|+||.|+|||+|.|.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 48999999999999999998
No 391
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.62 E-value=0.011 Score=66.43 Aligned_cols=161 Identities=25% Similarity=0.274 Sum_probs=85.6
Q ss_pred CCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC--eEEeechhhhhhh--------hcCc-------h----hHHHHHHHHH
Q 047690 356 AKIPKGALLVGPPGTGKTLLAKATAGESGVP--FLSISGSDFMEMF--------VGVG-------P----SRVRNLFQEA 414 (811)
Q Consensus 356 ~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp--fi~vs~s~~~~~~--------vG~~-------~----~~vr~lF~~A 414 (811)
-.+|+|++|||.-|||||+|.-..-..+... =-.|...+|+-.. ...+ . .-+.-+-.+.
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 4569999999999999999998877544210 0011222332110 0000 0 0011111111
Q ss_pred HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCC-CcccchhhcCCCCcceeee
Q 047690 415 RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNR-PDILDKALLRPGRFDRQIT 493 (811)
Q Consensus 415 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~-pd~LDpALlRpGRFdr~I~ 493 (811)
...-++|.+||+..- +-...-+|+.|...+= +.+||++||+|| |+.|-..= +.|...
T Consensus 191 -a~ea~lLCFDEfQVT------------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknG-----lQR~~F 248 (467)
T KOG2383|consen 191 -AEEAILLCFDEFQVT------------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNG-----LQRENF 248 (467)
T ss_pred -hhhceeeeechhhhh------------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcc-----hhhhhh
Confidence 122479999998542 1112335566655542 358999999996 44443221 222333
Q ss_pred ccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhC-CC--CcH-HHHHHHHHHHH
Q 047690 494 IDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALT-PG--FAG-ADIANVCNEAA 546 (811)
Q Consensus 494 v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t-~G--fSg-aDL~~LvneAa 546 (811)
+| -..+|+.+++-..++..+|. +..+... .+ |.+ .|...++++-.
T Consensus 249 ~P------fI~~L~~rc~vi~ldS~vDY--R~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 249 IP------FIALLEERCKVIQLDSGVDY--RRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred hh------HHHHHHHhheEEecCCccch--hhccCCCCceeEecChhhHHHHHHHHH
Confidence 32 25678888887777777775 3222221 11 233 37777777655
No 392
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.62 E-value=0.02 Score=59.83 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=27.9
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHh---cCCCeEEeec
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGE---SGVPFLSISG 392 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e---~gvpfi~vs~ 392 (811)
|......++|+||||+|||+|+..++.+ .+.+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3444456899999999999999987643 2556666664
No 393
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.61 E-value=0.016 Score=60.40 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=28.9
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechh
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSD 394 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~ 394 (811)
....-++|.|+||+|||+++..++.+. +.+.++++..+
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 334458899999999999999887543 77887777643
No 394
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.61 E-value=0.012 Score=57.54 Aligned_cols=35 Identities=37% Similarity=0.614 Sum_probs=28.8
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhh
Q 047690 364 LVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFV 400 (811)
Q Consensus 364 L~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~v 400 (811)
|.||||+|||++|+.||.+.+ +..++..+++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--LVHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--SEEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC--cceechHHHHHHHH
Confidence 689999999999999999986 56677777765543
No 395
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.61 E-value=0.017 Score=61.51 Aligned_cols=132 Identities=14% Similarity=0.181 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcCC--CeEEeechhh---hhh-----hhcC--chhH-------HHHHHHHHHh--
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESGV--PFLSISGSDF---MEM-----FVGV--GPSR-------VRNLFQEARQ-- 416 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~gv--pfi~vs~s~~---~~~-----~vG~--~~~~-------vr~lF~~A~~-- 416 (811)
.|-.+++.|++|||||++++.+.....- ..+.+-+... ... ++.. .... ......+...
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 3557899999999999999999876532 2222211111 111 1111 0111 1111111111
Q ss_pred -----cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCccee
Q 047690 417 -----CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQ 491 (811)
Q Consensus 417 -----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~ 491 (811)
..+++|+||++-. .....+.+.+++.. ...-++-+|..+...-.||+.++. -.+..
T Consensus 92 ~~~k~~~~~LiIlDD~~~-------------~~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~ 152 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGD-------------KKLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYF 152 (241)
T ss_pred cccCCCCCeEEEEeCCCC-------------chhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEE
Confidence 2368999999721 11223456666532 234467788888888899999876 67766
Q ss_pred eeccCCCHHHHHHHHHHH
Q 047690 492 ITIDKPDIKGRDQIFQVY 509 (811)
Q Consensus 492 I~v~~Pd~~eR~eIL~~~ 509 (811)
+-+. -+..+...|++.+
T Consensus 153 i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 153 IIFN-NSKRDLENIYRNM 169 (241)
T ss_pred EEec-CcHHHHHHHHHhc
Confidence 6564 4555555444443
No 396
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.61 E-value=0.0018 Score=65.41 Aligned_cols=34 Identities=41% Similarity=0.756 Sum_probs=28.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
|+|+||||+|||++|+.||...+++++ +..+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHHH
Confidence 799999999999999999999887655 4555543
No 397
>PLN02674 adenylate kinase
Probab=96.61 E-value=0.0081 Score=64.11 Aligned_cols=39 Identities=26% Similarity=0.449 Sum_probs=30.9
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
.+..++|.||||+||||+|+.||...+++. ++..+++..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~GdllR~ 68 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRA 68 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHHHH
Confidence 346699999999999999999999988554 555665543
No 398
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.60 E-value=0.0034 Score=70.15 Aligned_cols=28 Identities=46% Similarity=0.776 Sum_probs=23.6
Q ss_pred cCCCCCCc--EEEEcCCCCCHHHHHHHHHH
Q 047690 354 LGAKIPKG--ALLVGPPGTGKTLLAKATAG 381 (811)
Q Consensus 354 lg~~~pkG--vLL~GPPGTGKT~LAkAlA~ 381 (811)
+...+..| +-|.||+||||||+.|+||+
T Consensus 24 isl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 24 ISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred ceeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34556666 66999999999999999998
No 399
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.59 E-value=0.0022 Score=67.82 Aligned_cols=37 Identities=22% Similarity=0.474 Sum_probs=30.5
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
.|..++|.||||+||||+|+.+|..++++++++ .+++
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~--gdll 41 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM--GNIL 41 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC--ChHH
Confidence 455699999999999999999999999777655 4444
No 400
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.59 E-value=0.0019 Score=62.78 Aligned_cols=32 Identities=38% Similarity=0.756 Sum_probs=26.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhh
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDF 395 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~ 395 (811)
++|+|+||+|||++|+.++...+.+++ +...+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~ 33 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDL 33 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCccc
Confidence 689999999999999999999887654 44444
No 401
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.59 E-value=0.003 Score=70.62 Aligned_cols=70 Identities=24% Similarity=0.474 Sum_probs=47.3
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcCC--CeEEeec-hhhh-------hh-h----hcCchhHHHHHHHHHHhcCCeEE
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESGV--PFLSISG-SDFM-------EM-F----VGVGPSRVRNLFQEARQCAPSII 422 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~gv--pfi~vs~-s~~~-------~~-~----vG~~~~~vr~lF~~A~~~aP~IL 422 (811)
..+++|++||+|+||||+++++++.... .++.+.- .++. .. + .+...-...+++..+.++.|..|
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~I 240 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI 240 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeE
Confidence 3568999999999999999999987632 2332211 1110 00 0 11222356788888999999999
Q ss_pred EEcCc
Q 047690 423 FIDEI 427 (811)
Q Consensus 423 fIDEI 427 (811)
++.|+
T Consensus 241 ivGEi 245 (344)
T PRK13851 241 LLGEM 245 (344)
T ss_pred EEEee
Confidence 99998
No 402
>PRK04040 adenylate kinase; Provisional
Probab=96.59 E-value=0.0081 Score=61.55 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=28.1
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc--CCCeEEeechhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES--GVPFLSISGSDF 395 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~--gvpfi~vs~s~~ 395 (811)
|+-++|+|+||||||++++.++..+ +.++ ++..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~--~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKI--VNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeE--EecchH
Confidence 4568999999999999999999998 5554 444554
No 403
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.58 E-value=0.0099 Score=65.65 Aligned_cols=116 Identities=19% Similarity=0.208 Sum_probs=64.8
Q ss_pred CCCCCcEEEEcCCCCCHHHHHHHHHHhc---------CCCeEEeechhh------hhh--hhcCch--------------
Q 047690 356 AKIPKGALLVGPPGTGKTLLAKATAGES---------GVPFLSISGSDF------MEM--FVGVGP-------------- 404 (811)
Q Consensus 356 ~~~pkGvLL~GPPGTGKT~LAkAlA~e~---------gvpfi~vs~s~~------~~~--~vG~~~-------------- 404 (811)
.....-++|+||||||||+|+..+|-.+ +..+++++..+- .+. -.|...
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~~ 178 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAYN 178 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCCC
Confidence 3444457899999999999999998653 346777776441 100 001110
Q ss_pred -h----HHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC
Q 047690 405 -S----RVRNLFQEARQ-CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN 473 (811)
Q Consensus 405 -~----~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN 473 (811)
. .+..+...... ..+++|+||=|-++.+..-.+ .+...++++.+.+++..+..+....++.||.+..
T Consensus 179 ~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 179 SDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVG--RGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred HHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 0 01122222233 456799999999986542111 0112234455666666665554455666776644
No 404
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.016 Score=58.07 Aligned_cols=101 Identities=24% Similarity=0.350 Sum_probs=58.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCC--CeEEeechh-------hh----------hhhhc---------CchhHHHHHHH
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGV--PFLSISGSD-------FM----------EMFVG---------VGPSRVRNLFQ 412 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gv--pfi~vs~s~-------~~----------~~~vG---------~~~~~vr~lF~ 412 (811)
-+.|.||+|+|||+|++.+++.... --+.+++.+ +. ..+.+ .+..+.|-.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~la 107 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLALA 107 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHHH
Confidence 3789999999999999999986411 001111100 00 00111 11223444566
Q ss_pred HHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 413 EARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 413 ~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
.|....|.|+++||-.+ +.+......+.+++..+.. . +..+|.+|+.++
T Consensus 108 ral~~~p~illlDEPt~-----------~LD~~~~~~l~~~l~~~~~---~-g~tiii~th~~~ 156 (173)
T cd03230 108 QALLHDPELLILDEPTS-----------GLDPESRREFWELLRELKK---E-GKTILLSSHILE 156 (173)
T ss_pred HHHHcCCCEEEEeCCcc-----------CCCHHHHHHHHHHHHHHHH---C-CCEEEEECCCHH
Confidence 67777899999999633 4455556666667666532 2 334555666544
No 405
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.57 E-value=0.018 Score=57.50 Aligned_cols=33 Identities=36% Similarity=0.365 Sum_probs=27.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechh
Q 047690 362 ALLVGPPGTGKTLLAKATAGES---GVPFLSISGSD 394 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~ 394 (811)
++++||||+|||++++.+|..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 6899999999999999998764 66777777653
No 406
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.56 E-value=0.023 Score=65.39 Aligned_cols=111 Identities=19% Similarity=0.163 Sum_probs=60.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc-----CCCeEEeechhhhh-------h---------hhcCchhHHHHHHHHHHhc
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES-----GVPFLSISGSDFME-------M---------FVGVGPSRVRNLFQEARQC 417 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs~s~~~~-------~---------~vG~~~~~vr~lF~~A~~~ 417 (811)
.+.++|+||+|+||||++..+|..+ +..+..+++..+.. . ++......+...+....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--
Confidence 4568999999999999988887643 34566666654321 1 11122233333333222
Q ss_pred CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhc
Q 047690 418 APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALL 483 (811)
Q Consensus 418 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALl 483 (811)
...+|+||..-.. ..+......+..++.. ...+...++|+.+|..+..+...+.
T Consensus 299 ~~DlVlIDt~G~~----------~~d~~~~~~L~~ll~~--~~~~~~~~LVl~a~~~~~~l~~~~~ 352 (424)
T PRK05703 299 DCDVILIDTAGRS----------QRDKRLIEELKALIEF--SGEPIDVYLVLSATTKYEDLKDIYK 352 (424)
T ss_pred CCCEEEEeCCCCC----------CCCHHHHHHHHHHHhc--cCCCCeEEEEEECCCCHHHHHHHHH
Confidence 3578999986221 1222333344444441 1112234666666666666665443
No 407
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.56 E-value=0.0083 Score=65.29 Aligned_cols=37 Identities=30% Similarity=0.284 Sum_probs=28.8
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhc----C-CCeEEeechh
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGES----G-VPFLSISGSD 394 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~----g-vpfi~vs~s~ 394 (811)
.++-++|+||+|+||||++..+|..+ + ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 35568999999999999999998754 3 5666666654
No 408
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.55 E-value=0.0075 Score=61.92 Aligned_cols=43 Identities=28% Similarity=0.512 Sum_probs=33.6
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhc-CCCeEEeechhhhhhh
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGES-GVPFLSISGSDFMEMF 399 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~-gvpfi~vs~s~~~~~~ 399 (811)
..|.-+++.|+||+|||+++..+..+. +-.++.++..+|...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 467889999999999999999999988 7788999988876543
No 409
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.54 E-value=0.013 Score=64.32 Aligned_cols=116 Identities=22% Similarity=0.271 Sum_probs=64.3
Q ss_pred CCCCCcEEEEcCCCCCHHHHHHHHHHhc---------CCCeEEeechh-hh-----hh--hhcCchh-------------
Q 047690 356 AKIPKGALLVGPPGTGKTLLAKATAGES---------GVPFLSISGSD-FM-----EM--FVGVGPS------------- 405 (811)
Q Consensus 356 ~~~pkGvLL~GPPGTGKT~LAkAlA~e~---------gvpfi~vs~s~-~~-----~~--~vG~~~~------------- 405 (811)
.....-++|+||||||||+|+-.+|..+ +...++|+..+ |. +. ..+....
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~~ 171 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAYN 171 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecCC
Confidence 3334446899999999999999998653 23778887654 11 00 0111110
Q ss_pred ------HHHHHHHHHHhc--CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC
Q 047690 406 ------RVRNLFQEARQC--APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN 473 (811)
Q Consensus 406 ------~vr~lF~~A~~~--aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN 473 (811)
.+..+.+..... .+++|+||=|-++.+..-.+ .+...++.+.+++++..+..+....++.||.+..
T Consensus 172 ~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~--~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnq 245 (310)
T TIGR02236 172 SNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVG--RGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 245 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcC--chhHHHHHHHHHHHHHHHHHHHHHhCcEEEEece
Confidence 112222333333 36799999998876542111 0112234455666666665554555666666543
No 410
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.51 E-value=0.037 Score=61.35 Aligned_cols=36 Identities=33% Similarity=0.352 Sum_probs=27.8
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeech
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGS 393 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s 393 (811)
.|.-++|+||+|+||||++..+|..+ +..+..+++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 45668899999999999999999865 4455555543
No 411
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.51 E-value=0.012 Score=59.34 Aligned_cols=104 Identities=26% Similarity=0.360 Sum_probs=59.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCC--CeEEeechhh--------hhh---------hhcC------------chhHHHH
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGV--PFLSISGSDF--------MEM---------FVGV------------GPSRVRN 409 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gv--pfi~vs~s~~--------~~~---------~vG~------------~~~~vr~ 409 (811)
-+.|.||+|+|||+|++.+++.... =-+.+++.+. ... .++. +..+.+-
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl 106 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRV 106 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHH
Confidence 4789999999999999999996521 1122222110 000 0010 1123344
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 410 LFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 410 lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
.+..|....|.++++||-- .+.+......+.+++.++.. ..+..+|.+|+.++.+
T Consensus 107 ~laral~~~p~llllDEP~-----------~~LD~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~~~ 161 (180)
T cd03214 107 LLARALAQEPPILLLDEPT-----------SHLDIAHQIELLELLRRLAR---ERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHhcCCCEEEEeCCc-----------cCCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHH
Confidence 4556666789999999953 24455556666677766532 2133556666765543
No 412
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.51 E-value=0.028 Score=70.07 Aligned_cols=151 Identities=25% Similarity=0.247 Sum_probs=78.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeech--h-----hhh----hh----hcC-----------c----hhHHHH
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSISGS--D-----FME----MF----VGV-----------G----PSRVRN 409 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s--~-----~~~----~~----vG~-----------~----~~~vr~ 409 (811)
+-++|+||+|.|||+++...+...+ ++..++.. + |.. .. .+. . ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 3489999999999999999887766 66655542 1 111 00 000 0 011222
Q ss_pred HHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccch-hhcCCCC
Q 047690 410 LFQEARQ-CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDK-ALLRPGR 487 (811)
Q Consensus 410 lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDp-ALlRpGR 487 (811)
++..... ..|.+|+|||+|.+- +......+..|+..+ +..-.+|| ++.....++- .+...
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~-----------~~~~~~~l~~l~~~~----~~~~~lv~-~sR~~~~~~~~~l~~~-- 173 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT-----------NPEIHEAMRFFLRHQ----PENLTLVV-LSRNLPPLGIANLRVR-- 173 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC-----------ChHHHHHHHHHHHhC----CCCeEEEE-EeCCCCCCchHhHHhc--
Confidence 3333222 568999999999871 223344555555442 22233444 4433111211 11111
Q ss_pred cceeeecc----CCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCc
Q 047690 488 FDRQITID----KPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFA 534 (811)
Q Consensus 488 Fdr~I~v~----~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfS 534 (811)
+..+.+. ..+.++-.+++...+.. ..+. ..+..+.+.|.|+.
T Consensus 174 -~~~~~l~~~~l~f~~~e~~~ll~~~~~~---~~~~-~~~~~l~~~t~Gwp 219 (903)
T PRK04841 174 -DQLLEIGSQQLAFDHQEAQQFFDQRLSS---PIEA-AESSRLCDDVEGWA 219 (903)
T ss_pred -CcceecCHHhCCCCHHHHHHHHHhccCC---CCCH-HHHHHHHHHhCChH
Confidence 2234444 55777777777654432 2222 22466777888754
No 413
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.50 E-value=0.0082 Score=66.19 Aligned_cols=33 Identities=33% Similarity=0.573 Sum_probs=29.8
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEE
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGESGVPFLS 389 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~ 389 (811)
..+..|+|+|+||||||++++.+|..++++|+.
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id 163 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVE 163 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 345679999999999999999999999999994
No 414
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.50 E-value=0.0052 Score=74.95 Aligned_cols=33 Identities=36% Similarity=0.569 Sum_probs=25.5
Q ss_pred hhhcCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 351 YEDLGAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 351 ~~~lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
++.+...+++| +.|+||+|+|||||++.+++..
T Consensus 495 L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33444445544 8899999999999999999854
No 415
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.49 E-value=0.016 Score=57.55 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHH
Q 047690 360 KGALLVGPPGTGKTLLAKATAG 381 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~ 381 (811)
+-.+++||.|+|||++.++++-
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999753
No 416
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.48 E-value=0.0022 Score=63.35 Aligned_cols=32 Identities=38% Similarity=0.666 Sum_probs=26.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhh
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDF 395 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~ 395 (811)
++|+||||+|||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999986664 44444
No 417
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.47 E-value=0.012 Score=73.99 Aligned_cols=175 Identities=21% Similarity=0.265 Sum_probs=97.1
Q ss_pred CCCcEEEEcCCCCCHHHH-HHHHHHhcCCCeEEeechhhhhhhhcCchhHHHHHHHHHHhc--------CC------eEE
Q 047690 358 IPKGALLVGPPGTGKTLL-AKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQC--------AP------SII 422 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~L-AkAlA~e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~--------aP------~IL 422 (811)
..++++++||||+|||+| .-++-.+.-+.++.+|.+... .++..++.+-+..... -| -||
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVL 1567 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVL 1567 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHHHHhhceeeccCCeEEEccCcchhheEE
Confidence 357899999999999986 557777888888888766432 1223333222221110 01 399
Q ss_pred EEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC--------CCCcEEEEecCCCCcccchhhcCCCCcce---e
Q 047690 423 FIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG--------TTAGVVVIAGTNRPDILDKALLRPGRFDR---Q 491 (811)
Q Consensus 423 fIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~--------~~~~VIVIaaTN~pd~LDpALlRpGRFdr---~ 491 (811)
|.|||. +-..+.- ..+..---+.+ |.+-.||- .-.++++.+++|.+...-. .--|-||-+ .
T Consensus 1568 FcDeIn-Lp~~~~y-----~~~~vI~FlR~-l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gR-v~~~eRf~r~~v~ 1639 (3164)
T COG5245 1568 FCDEIN-LPYGFEY-----YPPTVIVFLRP-LVERQGFWSSIAVSWVTICGIILYGACNPGTDEGR-VKYYERFIRKPVF 1639 (3164)
T ss_pred EeeccC-Ccccccc-----CCCceEEeeHH-HHHhcccccchhhhHhhhcceEEEccCCCCCCccc-CccHHHHhcCceE
Confidence 999998 4222211 11100001112 22223342 2357999999998764220 111123333 4
Q ss_pred eeccCCCHHHHHHHHHHHHhhccCCCC-------------Cchhhh------HHHhhCCCCcHHHHHHHHHHH
Q 047690 492 ITIDKPDIKGRDQIFQVYLKKIKLDHE-------------PSYYSQ------RLAALTPGFAGADIANVCNEA 545 (811)
Q Consensus 492 I~v~~Pd~~eR~eIL~~~l~~~~l~~~-------------~d~~l~------~LA~~t~GfSgaDL~~LvneA 545 (811)
+++..|.......|...++...-+..+ +.+... ...+..-||+|+||-.+++-.
T Consensus 1640 vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i 1712 (3164)
T COG5245 1640 VFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAI 1712 (3164)
T ss_pred EEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHH
Confidence 788899999999999988765332221 111000 001122579999998888743
No 418
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.47 E-value=0.012 Score=65.00 Aligned_cols=110 Identities=21% Similarity=0.249 Sum_probs=62.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh---------cCCCeEEeechh-hh-h----h--hhcCc---------------hhHH
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE---------SGVPFLSISGSD-FM-E----M--FVGVG---------------PSRV 407 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e---------~gvpfi~vs~s~-~~-~----~--~vG~~---------------~~~v 407 (811)
.-+.|+||||||||.|+..+|-. .+...++++... |. + + -.+.. ....
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~~e~~ 176 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYTSEHQ 176 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCCHHHH
Confidence 34679999999999999887742 245677776543 10 0 0 00111 1111
Q ss_pred HHHHH----HHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEec
Q 047690 408 RNLFQ----EARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAG 471 (811)
Q Consensus 408 r~lF~----~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaa 471 (811)
.+++. ......+.+|+||-|-++.+..-.+ .+.-.++.+.+.+++..|..+....++.||.+
T Consensus 177 ~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~--~g~~~~r~~~l~~~~~~L~~la~~~~vavvit 242 (313)
T TIGR02238 177 MELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG--RGELSERQQKLAQMLSRLNKISEEFNVAVFVT 242 (313)
T ss_pred HHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC--ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 22222 2233468899999999987642111 11223344556777766666555556666655
No 419
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.46 E-value=0.015 Score=57.19 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=22.7
Q ss_pred CcEEEEcCCCCCHHH-HHHHHHHhcC----CCeEEeec
Q 047690 360 KGALLVGPPGTGKTL-LAKATAGESG----VPFLSISG 392 (811)
Q Consensus 360 kGvLL~GPPGTGKT~-LAkAlA~e~g----vpfi~vs~ 392 (811)
+.+++.||+|||||+ ++..+..... .+++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 578999999999999 5555554432 34555544
No 420
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.46 E-value=0.0051 Score=69.47 Aligned_cols=67 Identities=25% Similarity=0.365 Sum_probs=45.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcC-----CCeEEeec-hhhh-----------hhhhcCchhHHHHHHHHHHhcCCeEEE
Q 047690 361 GALLVGPPGTGKTLLAKATAGESG-----VPFLSISG-SDFM-----------EMFVGVGPSRVRNLFQEARQCAPSIIF 423 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~g-----vpfi~vs~-s~~~-----------~~~vG~~~~~vr~lF~~A~~~aP~ILf 423 (811)
.+|++||+|+||||+++++..... ..++.+.- .++. ..-+|........+...+.+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 478999999999999999988662 33444421 1211 111222223456677777888999999
Q ss_pred EcCc
Q 047690 424 IDEI 427 (811)
Q Consensus 424 IDEI 427 (811)
+.|+
T Consensus 231 vGEi 234 (372)
T TIGR02525 231 VGEI 234 (372)
T ss_pred eCCC
Confidence 9998
No 421
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.46 E-value=0.012 Score=64.57 Aligned_cols=56 Identities=23% Similarity=0.324 Sum_probs=39.0
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccc
Q 047690 410 LFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILD 479 (811)
Q Consensus 410 lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LD 479 (811)
.+..|-...|.++|+||- .++.+......+.+++..+.. ..+..|+.+|+.++.+.
T Consensus 146 ~ia~aL~~~P~lliLDEP-----------t~GLDp~~~~~~~~~l~~l~~---~g~~tvlissH~l~e~~ 201 (293)
T COG1131 146 SIALALLHDPELLILDEP-----------TSGLDPESRREIWELLRELAK---EGGVTILLSTHILEEAE 201 (293)
T ss_pred HHHHHHhcCCCEEEECCC-----------CcCCCHHHHHHHHHHHHHHHh---CCCcEEEEeCCcHHHHH
Confidence 344555667999999994 346677777777777777653 33467888888776554
No 422
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.45 E-value=0.011 Score=59.63 Aligned_cols=23 Identities=35% Similarity=0.313 Sum_probs=20.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-+.|.||+|+|||+|++.+++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 423
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.45 E-value=0.0087 Score=69.14 Aligned_cols=95 Identities=21% Similarity=0.320 Sum_probs=62.8
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCc-EEEEcCCCCCHHHHHHHHHHhcCCCeE-Eeechhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKG-ALLVGPPGTGKTLLAKATAGESGVPFL-SISGSDFME 397 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkG-vLL~GPPGTGKT~LAkAlA~e~gvpfi-~vs~s~~~~ 397 (811)
....+|+++.......+.+.+++. -|.| +|++||.|+|||+...++.++++-+.. .++..|-++
T Consensus 232 ~~~l~l~~Lg~~~~~~~~~~~~~~--------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE 297 (500)
T COG2804 232 QVILDLEKLGMSPFQLARLLRLLN--------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVE 297 (500)
T ss_pred cccCCHHHhCCCHHHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCee
Confidence 356788899888888888877765 3667 467899999999999999998865544 222233222
Q ss_pred hhh-cCc--------hhHHHHHHHHHHhcCCeEEEEcCcc
Q 047690 398 MFV-GVG--------PSRVRNLFQEARQCAPSIIFIDEID 428 (811)
Q Consensus 398 ~~v-G~~--------~~~vr~lF~~A~~~aP~ILfIDEID 428 (811)
... |.. .-.....+....++.|+||.+.||-
T Consensus 298 ~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 298 YQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred eecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 210 000 0112334444556789999999993
No 424
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.45 E-value=0.0068 Score=72.29 Aligned_cols=31 Identities=45% Similarity=0.641 Sum_probs=24.6
Q ss_pred hcCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 353 DLGAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 353 ~lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.....+++| +.|+||+|+|||||++.+++..
T Consensus 368 ~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 368 PLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334444444 8999999999999999999865
No 425
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.44 E-value=0.0097 Score=59.92 Aligned_cols=104 Identities=25% Similarity=0.381 Sum_probs=59.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCC--eEEeechh----------hh----------hhhhc-----------CchhHH
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVP--FLSISGSD----------FM----------EMFVG-----------VGPSRV 407 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvp--fi~vs~s~----------~~----------~~~vG-----------~~~~~v 407 (811)
-+.|.||+|+|||+|++++++..... -+.+++.+ +. ..+.+ .+..+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~q 107 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQ 107 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHHHHH
Confidence 36799999999999999999864210 01111100 00 00101 112334
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 408 RNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 408 r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
|-.+..|....|.++++||-. .+.+......+.+++.++.. ..+..+|.+|+.++.+
T Consensus 108 r~~la~al~~~p~llilDEP~-----------~~LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~~ 164 (178)
T cd03229 108 RVALARALAMDPDVLLLDEPT-----------SALDPITRREVRALLKSLQA---QLGITVVLVTHDLDEA 164 (178)
T ss_pred HHHHHHHHHCCCCEEEEeCCc-----------ccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHH
Confidence 445666667789999999953 34556666667777766542 2123455566654443
No 426
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.44 E-value=0.053 Score=62.46 Aligned_cols=71 Identities=25% Similarity=0.349 Sum_probs=45.6
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeechhhhhh----------------hh-c--Cch-hHHHHHHH
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSISGSDFMEM----------------FV-G--VGP-SRVRNLFQ 412 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~s~~~~~----------------~v-G--~~~-~~vr~lF~ 412 (811)
..|.-++++|++|+|||+++..+|..+ +..+..++|..+... +. + ..+ ...++.++
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 346779999999999999988887653 567777777533210 11 0 112 22245555
Q ss_pred HHHhcCCeEEEEcCc
Q 047690 413 EARQCAPSIIFIDEI 427 (811)
Q Consensus 413 ~A~~~aP~ILfIDEI 427 (811)
.+......+|+||=.
T Consensus 177 ~~~~~~~DvVIIDTa 191 (428)
T TIGR00959 177 YAKENGFDVVIVDTA 191 (428)
T ss_pred HHHhcCCCEEEEeCC
Confidence 565556678888875
No 427
>PRK14530 adenylate kinase; Provisional
Probab=96.43 E-value=0.0026 Score=66.02 Aligned_cols=35 Identities=34% Similarity=0.530 Sum_probs=28.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
.|+|.||||+||||+++.||..++.+++.+ .+++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~--g~~lr 39 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT--GDALR 39 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec--cHHHH
Confidence 489999999999999999999998776644 45543
No 428
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.42 E-value=0.012 Score=62.11 Aligned_cols=20 Identities=45% Similarity=0.494 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 047690 362 ALLVGPPGTGKTLLAKATAG 381 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~ 381 (811)
.+|+||||+|||+|+..+|-
T Consensus 4 ~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHH
Confidence 48999999999999998875
No 429
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.42 E-value=0.0082 Score=60.60 Aligned_cols=72 Identities=29% Similarity=0.446 Sum_probs=41.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc-------------CCCeEEeechh----hhhh---------------hhc--------
Q 047690 362 ALLVGPPGTGKTLLAKATAGES-------------GVPFLSISGSD----FMEM---------------FVG-------- 401 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~-------------gvpfi~vs~s~----~~~~---------------~vG-------- 401 (811)
++|+||||+|||+++..++... +.++++++... +... +..
T Consensus 35 ~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (193)
T PF13481_consen 35 TLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCIR 114 (193)
T ss_dssp EEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccce
Confidence 7899999999999999887643 23667776532 1111 000
Q ss_pred ---------CchhHHHHHHHHHHh-cCCeEEEEcCcchhhhh
Q 047690 402 ---------VGPSRVRNLFQEARQ-CAPSIIFIDEIDAIGRA 433 (811)
Q Consensus 402 ---------~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~ 433 (811)
.....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 115 LFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp --TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 011223455555666 56899999999999643
No 430
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.39 E-value=0.0033 Score=62.51 Aligned_cols=31 Identities=35% Similarity=0.493 Sum_probs=28.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
+.++|+|+||+|||++++.+|..++.||+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 3589999999999999999999999998754
No 431
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.39 E-value=0.0071 Score=51.63 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=24.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc-CCCeEEeec
Q 047690 362 ALLVGPPGTGKTLLAKATAGES-GVPFLSISG 392 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~-gvpfi~vs~ 392 (811)
+.+.|+||+|||+++++++..+ +.++..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 5789999999999999999985 344444443
No 432
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.37 E-value=0.0035 Score=63.17 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=29.9
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeec
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISG 392 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~ 392 (811)
++.|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3469999999999999999999999999876653
No 433
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.36 E-value=0.0098 Score=64.62 Aligned_cols=39 Identities=28% Similarity=0.397 Sum_probs=30.1
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
++-++|+|+|||||||+|+.++..+. .++.++..++..+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~ 40 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQS 40 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHH
Confidence 34588999999999999999999983 3455566666544
No 434
>PRK04328 hypothetical protein; Provisional
Probab=96.36 E-value=0.032 Score=59.61 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=28.1
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHh---cCCCeEEeec
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGE---SGVPFLSISG 392 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e---~gvpfi~vs~ 392 (811)
|......+||+||||||||+|+..++.+ .|.+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 3434455899999999999998876543 3677777765
No 435
>PRK08233 hypothetical protein; Provisional
Probab=96.35 E-value=0.0084 Score=59.77 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=25.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcC-CCeEEee
Q 047690 361 GALLVGPPGTGKTLLAKATAGESG-VPFLSIS 391 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~g-vpfi~vs 391 (811)
=|.+.|+||+||||+|+.|+..++ .+++..+
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 367899999999999999999885 4455443
No 436
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.34 E-value=0.0084 Score=72.91 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=23.4
Q ss_pred CCCCCC--cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 355 GAKIPK--GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 355 g~~~pk--GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
...+++ -+.|+||+|+|||||++.+++..
T Consensus 473 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 473 SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444 48999999999999999999854
No 437
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.33 E-value=0.0031 Score=62.79 Aligned_cols=28 Identities=36% Similarity=0.596 Sum_probs=26.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEE
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLS 389 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~ 389 (811)
|-+.|||||||||+|+-||..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5689999999999999999999999986
No 438
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0058 Score=61.55 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=27.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
++++|.||||||++++.|+ +++.+.++++ +|.
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~--el~ 34 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN--ELA 34 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH--HHH
Confidence 7899999999999999999 8888887664 654
No 439
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.32 E-value=0.03 Score=60.14 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=28.1
Q ss_pred CCCCCcEEEEcCCCCCHHHHHHHHHHh---cCCCeEEeech
Q 047690 356 AKIPKGALLVGPPGTGKTLLAKATAGE---SGVPFLSISGS 393 (811)
Q Consensus 356 ~~~pkGvLL~GPPGTGKT~LAkAlA~e---~gvpfi~vs~s 393 (811)
.....-++++||||||||+|+..+|.+ .+-+.++++..
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 333445899999999999999987664 36677777643
No 440
>PRK06547 hypothetical protein; Provisional
Probab=96.31 E-value=0.0036 Score=63.23 Aligned_cols=33 Identities=33% Similarity=0.437 Sum_probs=28.6
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
.+.-|+++|++|+|||++|+.++..++++++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 355688999999999999999999998887754
No 441
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.31 E-value=0.021 Score=59.68 Aligned_cols=27 Identities=33% Similarity=0.780 Sum_probs=22.1
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHH
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAG 381 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~ 381 (811)
...+.+| +.++||+|+|||||.|++..
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred ceeEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3444455 78999999999999999976
No 442
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.30 E-value=0.0053 Score=60.74 Aligned_cols=34 Identities=32% Similarity=0.554 Sum_probs=24.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
|.|+|+||||||||+++|+.. |.+++.=.+..+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~ 35 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREII 35 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHH
Confidence 689999999999999999998 8887744444444
No 443
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.29 E-value=0.14 Score=56.38 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=31.9
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
+.|.-+++.|++|||||++|+.||..++.+. .++...+.
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~-vi~~D~~r 128 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRS-VIGTDSIR 128 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCE-EEechHHH
Confidence 4577899999999999999999999999884 35554443
No 444
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.28 E-value=0.0038 Score=62.55 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=27.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
-++|.||||+||||+|+.++..++.+. ++..+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHHH
Confidence 378999999999999999999987654 4555543
No 445
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.28 E-value=0.0074 Score=67.03 Aligned_cols=71 Identities=24% Similarity=0.221 Sum_probs=47.6
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCch-----h---HHHH---HHHHHHhcCCeEEEEcCc
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGP-----S---RVRN---LFQEARQCAPSIIFIDEI 427 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~-----~---~vr~---lF~~A~~~aP~ILfIDEI 427 (811)
.+.+.|.|+||||||+|+++++...+.+++.-.+.++.....+... . .+.. ....+...++.|||+|-
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~~~~a~~iif~D~- 240 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYAVRHAHKIAFIDT- 240 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCeEEEcC-
Confidence 3468999999999999999999999999987777766554331111 1 1111 12333445667999995
Q ss_pred chh
Q 047690 428 DAI 430 (811)
Q Consensus 428 DaL 430 (811)
+.+
T Consensus 241 ~~~ 243 (325)
T TIGR01526 241 DFI 243 (325)
T ss_pred ChH
Confidence 443
No 446
>PRK14528 adenylate kinase; Provisional
Probab=96.28 E-value=0.0037 Score=63.67 Aligned_cols=30 Identities=33% Similarity=0.614 Sum_probs=26.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
.+++.||||+|||++|+.+|...+.+.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 489999999999999999999999877654
No 447
>PRK06696 uridine kinase; Validated
Probab=96.27 E-value=0.0075 Score=63.10 Aligned_cols=38 Identities=34% Similarity=0.441 Sum_probs=33.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFM 396 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~ 396 (811)
|.-|.+.|++|+||||||+.|+..+ +.+++.++..+|.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 5568899999999999999999988 7788888877774
No 448
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.015 Score=63.37 Aligned_cols=21 Identities=43% Similarity=0.743 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHh
Q 047690 362 ALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e 382 (811)
+-|.||+|+|||||.|.||+-
T Consensus 31 vaLlGpSGaGKsTlLRiIAGL 51 (345)
T COG1118 31 VALLGPSGAGKSTLLRIIAGL 51 (345)
T ss_pred EEEECCCCCcHHHHHHHHhCc
Confidence 678999999999999999983
No 449
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.26 E-value=0.021 Score=66.83 Aligned_cols=73 Identities=23% Similarity=0.274 Sum_probs=51.4
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhh------hcC----------------------chhHHH
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMF------VGV----------------------GPSRVR 408 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~------vG~----------------------~~~~vr 408 (811)
.-+||.||||||||+|+-.++.+. +-+.++++..+-.+.+ .|. .+..+.
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~ 343 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQ 343 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHHHH
Confidence 348999999999999999887754 6678888764432211 110 033455
Q ss_pred HHHHHHHhcCCeEEEEcCcchhhh
Q 047690 409 NLFQEARQCAPSIIFIDEIDAIGR 432 (811)
Q Consensus 409 ~lF~~A~~~aP~ILfIDEIDaL~~ 432 (811)
.+.+......|.+|+||-+..+..
T Consensus 344 ~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 344 IIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHcCCCEEEEcCHHHHHH
Confidence 666667777899999999998843
No 450
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.26 E-value=0.014 Score=58.42 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=31.2
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcC---CCeEEeechhhhhh
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESG---VPFLSISGSDFMEM 398 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~g---vpfi~vs~s~~~~~ 398 (811)
.|.-++|+|+||+|||++|++++..+. ...+.++...+.+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~ 49 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREI 49 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhh
Confidence 456689999999999999999999875 33556666555443
No 451
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.25 E-value=0.066 Score=58.09 Aligned_cols=37 Identities=32% Similarity=0.418 Sum_probs=28.6
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeech
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGS 393 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s 393 (811)
..|+-++|+||+|+|||+++..+|..+ +..+..+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 346778899999999999999998755 5556666554
No 452
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.25 E-value=0.01 Score=67.67 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=32.5
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
.+.|.|+|++|||||||+++||..++.+.+.--+.++..
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~ 257 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVF 257 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHH
Confidence 467999999999999999999999998877655555553
No 453
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.24 E-value=0.011 Score=70.37 Aligned_cols=33 Identities=33% Similarity=0.529 Sum_probs=25.6
Q ss_pred hhhcCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 351 YEDLGAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 351 ~~~lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
++.....+++| +.|+||+|+|||||++.+++..
T Consensus 359 l~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred ccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34444444444 8999999999999999999854
No 454
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.23 E-value=0.15 Score=54.43 Aligned_cols=186 Identities=16% Similarity=0.205 Sum_probs=98.6
Q ss_pred CCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeec--hhhhhhhhc--CchhHHHHHHH---HHHhc---CC-eEEEE
Q 047690 356 AKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISG--SDFMEMFVG--VGPSRVRNLFQ---EARQC---AP-SIIFI 424 (811)
Q Consensus 356 ~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~--s~~~~~~vG--~~~~~vr~lF~---~A~~~---aP-~ILfI 424 (811)
.+.|.-+||=|+||+|||++|.-+|.++|.+-+.-.- -+++-..++ ..+---...|. ..+.. .| +.=|.
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~ 165 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFE 165 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHH
Confidence 3457778999999999999999999999987542111 122222221 01111111222 11111 11 01123
Q ss_pred cCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC-CCcccchhhcCCCCcceeeeccCCCHHHHH
Q 047690 425 DEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN-RPDILDKALLRPGRFDRQITIDKPDIKGRD 503 (811)
Q Consensus 425 DEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN-~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~ 503 (811)
|.+..+. .-.+.++..-+++ ..+ +||=... -|..+++..+. --...+.+-.+|.+..+
T Consensus 166 dqa~~V~------------~GI~~VI~RAi~e------G~~-lIIEGvHlVPg~i~~~~~~--~n~~~~~l~i~dee~Hr 224 (299)
T COG2074 166 DQASAVM------------VGIEAVIERAIEE------GED-LIIEGVHLVPGLIKEEALG--NNVFMFMLYIADEELHR 224 (299)
T ss_pred HHhHHHH------------HHHHHHHHHHHhc------Ccc-eEEEeeeeccccccHhhhc--cceEEEEEEeCCHHHHH
Confidence 3332221 1122333333322 123 3443443 57777777663 22335667778877766
Q ss_pred HHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhc
Q 047690 504 QIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIG 571 (811)
Q Consensus 504 eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rvi~ 571 (811)
.-|-............ .+.++. -.++..+-+.....|...+-..|..+|+++++++++.
T Consensus 225 ~RF~~R~~~t~~~rp~----~Ryl~y-----f~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il~ 283 (299)
T COG2074 225 ERFYDRIRYTHASRPG----GRYLEY-----FKEIRTIHDYLVERAREHGVPVIENDDIDETVDRILE 283 (299)
T ss_pred HHHHHHHHHHhccCch----hHHHHH-----HHHHHHHHHHHHHHHHhcCCCeeccccHHHHHHHHHH
Confidence 6555544433222221 112211 1367777777777777788889999999999998764
No 455
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.23 E-value=0.015 Score=65.19 Aligned_cols=108 Identities=20% Similarity=0.220 Sum_probs=61.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc---------CCCeEEeechh------hhhh--hhcCc---------------hhHHHH
Q 047690 362 ALLVGPPGTGKTLLAKATAGES---------GVPFLSISGSD------FMEM--FVGVG---------------PSRVRN 409 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~---------gvpfi~vs~s~------~~~~--~vG~~---------------~~~vr~ 409 (811)
..|+||||||||.|+..+|-.+ +..+++++... +... -.|.. ...+..
T Consensus 129 tEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~e~~~~ 208 (344)
T PLN03187 129 TEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQYN 208 (344)
T ss_pred EEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCHHHHHH
Confidence 6799999999999999886422 24667776533 1111 01111 111112
Q ss_pred HHH----HHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEec
Q 047690 410 LFQ----EARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAG 471 (811)
Q Consensus 410 lF~----~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaa 471 (811)
++. ......+.+|+||-|-++.+..-.+ .+.-.++++.+.+++..|..+....++.||.+
T Consensus 209 ~l~~l~~~i~~~~~~LvVIDSital~r~~~~~--rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvT 272 (344)
T PLN03187 209 LLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG--RGELAERQQKLAQMLSRLTKIAEEFNVAVYMT 272 (344)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHhhhccccC--ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 222 2234568899999999987642111 11223455567777766655544556666655
No 456
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.22 E-value=0.024 Score=58.11 Aligned_cols=59 Identities=17% Similarity=0.296 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccc
Q 047690 406 RVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILD 479 (811)
Q Consensus 406 ~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LD 479 (811)
..|-.++.|.-+.|.+|+-||= ....+++...-+-++++++.. .+..|+.||...+.++
T Consensus 143 QQRvaIARAiV~~P~vLlADEP-----------TGNLDp~~s~~im~lfeeinr----~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEP-----------TGNLDPDLSWEIMRLFEEINR----LGTTVLMATHDLELVN 201 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCC-----------CCCCChHHHHHHHHHHHHHhh----cCcEEEEEeccHHHHH
Confidence 3455666777788999999993 223455656666677777764 3446666777544444
No 457
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.021 Score=58.72 Aligned_cols=23 Identities=39% Similarity=0.601 Sum_probs=20.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-+.|.||+|+|||+|++.|++..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccC
Confidence 47899999999999999999864
No 458
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.21 E-value=0.027 Score=57.56 Aligned_cols=24 Identities=38% Similarity=0.643 Sum_probs=21.7
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
..+.|.||+|+|||+|.+.+++..
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 347899999999999999999976
No 459
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.21 E-value=0.011 Score=69.62 Aligned_cols=33 Identities=27% Similarity=0.587 Sum_probs=25.6
Q ss_pred hhhcCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 351 YEDLGAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 351 ~~~lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
++++...+++| +.|+||+|+|||||++.+++..
T Consensus 351 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 351 LDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33444455554 8999999999999999999854
No 460
>PRK02496 adk adenylate kinase; Provisional
Probab=96.19 E-value=0.0045 Score=62.47 Aligned_cols=30 Identities=33% Similarity=0.581 Sum_probs=26.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
-++|.||||+|||++|+.||..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 378999999999999999999998766543
No 461
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.19 E-value=0.0044 Score=64.15 Aligned_cols=33 Identities=42% Similarity=0.779 Sum_probs=27.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
|+|.||||+|||++|+.||...+++.++ ..+++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdll 34 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLL 34 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHH
Confidence 7899999999999999999998876654 44554
No 462
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.18 E-value=0.017 Score=60.31 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=20.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-+.|.||+|+|||||++.+++..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999853
No 463
>PRK13808 adenylate kinase; Provisional
Probab=96.17 E-value=0.039 Score=61.48 Aligned_cols=33 Identities=36% Similarity=0.637 Sum_probs=27.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
|+|+||||+|||++++.||..++++.+ +..+++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdlL 35 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQL--STGDML 35 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee--cccHHH
Confidence 799999999999999999999987554 445554
No 464
>PTZ00035 Rad51 protein; Provisional
Probab=96.16 E-value=0.02 Score=63.96 Aligned_cols=110 Identities=20% Similarity=0.238 Sum_probs=61.5
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc---------CCCeEEeechhh------hhhh--hcCc---------------hhHH
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES---------GVPFLSISGSDF------MEMF--VGVG---------------PSRV 407 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~---------gvpfi~vs~s~~------~~~~--vG~~---------------~~~v 407 (811)
.-+.|+||||||||+|+..++..+ +...++++...- .... .+.. ....
T Consensus 119 ~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~~~e~~ 198 (337)
T PTZ00035 119 SITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAYNHEHQ 198 (337)
T ss_pred eEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccCCHHHH
Confidence 346799999999999999987543 334566665331 1110 0110 0111
Q ss_pred HHHH----HHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEec
Q 047690 408 RNLF----QEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAG 471 (811)
Q Consensus 408 r~lF----~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaa 471 (811)
..++ .......+.+|+||=|-++.+..-.+ .+...++++.+.+++..+..+....++.||.+
T Consensus 199 ~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 199 MQLLSQAAAKMAEERFALLIVDSATALFRVDYSG--RGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred HHHHHHHHHHhhccCccEEEEECcHHhhhhhccC--cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 1222 22223567899999999987542111 01223445567777766665544556666654
No 465
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.13 E-value=0.011 Score=72.10 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=24.3
Q ss_pred hcCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 353 DLGAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 353 ~lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.....+++| +.|+||+|+|||||++.+++..
T Consensus 483 ~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 483 NVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334444444 8899999999999999999854
No 466
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.13 E-value=0.0082 Score=64.65 Aligned_cols=77 Identities=25% Similarity=0.405 Sum_probs=50.3
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHH------hcCCCeEEeechhhhhhhh-cCchhHHHHHHHHHH--------hcCC
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAG------ESGVPFLSISGSDFMEMFV-GVGPSRVRNLFQEAR--------QCAP 419 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~------e~gvpfi~vs~s~~~~~~v-G~~~~~vr~lF~~A~--------~~aP 419 (811)
..+....+||.||.|.||+.||+-|-. .+..+|+.|+|..+...-. ..--..++..|.-|+ ....
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadg 283 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADG 283 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCC
Confidence 334445699999999999999998854 4578999999987742100 000012333333332 2235
Q ss_pred eEEEEcCcchhh
Q 047690 420 SIIFIDEIDAIG 431 (811)
Q Consensus 420 ~ILfIDEIDaL~ 431 (811)
.++|+|||..++
T Consensus 284 gmlfldeigelg 295 (531)
T COG4650 284 GMLFLDEIGELG 295 (531)
T ss_pred ceEehHhhhhcC
Confidence 699999998884
No 467
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.13 E-value=0.017 Score=67.57 Aligned_cols=92 Identities=20% Similarity=0.272 Sum_probs=57.7
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCc-EEEEcCCCCCHHHHHHHHHHhcC---CCeEEeec-hhhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKG-ALLVGPPGTGKTLLAKATAGESG---VPFLSISG-SDFM 396 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkG-vLL~GPPGTGKT~LAkAlA~e~g---vpfi~vs~-s~~~ 396 (811)
..+++++.-.++..+.+..++. .+.| +|++||+|+||||+.+++..+.. ..++++.. .++.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~--------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~ 283 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR--------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ 283 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee
Confidence 4577777655666666666553 2456 68999999999999998877663 33444421 1111
Q ss_pred hhh-----hcC-chhHHHHHHHHHHhcCCeEEEEcCc
Q 047690 397 EMF-----VGV-GPSRVRNLFQEARQCAPSIIFIDEI 427 (811)
Q Consensus 397 ~~~-----vG~-~~~~vr~lF~~A~~~aP~ILfIDEI 427 (811)
-.. +.. .......+...+.+..|.||+|.||
T Consensus 284 ~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEi 320 (486)
T TIGR02533 284 IEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEI 320 (486)
T ss_pred cCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCC
Confidence 000 110 1123445556667788999999998
No 468
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.13 E-value=0.021 Score=61.39 Aligned_cols=108 Identities=24% Similarity=0.287 Sum_probs=63.8
Q ss_pred EEcCCCCCHHHHHHHHHHhc---------CCCeEEeechh---------hhhhhhcC--------------chhHHHHHH
Q 047690 364 LVGPPGTGKTLLAKATAGES---------GVPFLSISGSD---------FMEMFVGV--------------GPSRVRNLF 411 (811)
Q Consensus 364 L~GPPGTGKT~LAkAlA~e~---------gvpfi~vs~s~---------~~~~~vG~--------------~~~~vr~lF 411 (811)
|+||||+|||.|+..+|-.+ +..+++++... +.+.|... ....+..++
T Consensus 43 i~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~L 122 (256)
T PF08423_consen 43 IVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLELL 122 (256)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHHHH
T ss_pred EEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHHHH
Confidence 89999999999999887644 23477776532 11111100 011112222
Q ss_pred ----HHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC
Q 047690 412 ----QEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN 473 (811)
Q Consensus 412 ----~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN 473 (811)
.........+|+||-|-++.+..-.+ .+...++...+..++..+..+....++.||.+..
T Consensus 123 ~~l~~~l~~~~ikLIVIDSIaalfr~e~~~--~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNq 186 (256)
T PF08423_consen 123 EQLPKLLSESKIKLIVIDSIAALFRSEFSG--RGDLAERQRMLARLARILKRLARKYNIAVVVTNQ 186 (256)
T ss_dssp HHHHHHHHHSCEEEEEEETSSHHHHHHSGS--TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHhhccccceEEEEecchHHHHHHHHcc--chhhHHHHHHHHHHHHHHHHHHHhCCceEEeece
Confidence 22223456799999999998754211 1223456778888877777766666777765533
No 469
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.03 Score=57.13 Aligned_cols=101 Identities=24% Similarity=0.372 Sum_probs=56.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcC----CCeEEeechhh----h----------hhhh---------------cC-chhH
Q 047690 361 GALLVGPPGTGKTLLAKATAGESG----VPFLSISGSDF----M----------EMFV---------------GV-GPSR 406 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~g----vpfi~vs~s~~----~----------~~~v---------------G~-~~~~ 406 (811)
-+.|.||+|+|||+|++.+++... .=-+.+++.++ . ..+. .. +..+
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe~ 114 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQR 114 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcCCHHHh
Confidence 478999999999999999997421 00011111000 0 0000 01 1122
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 407 VRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 407 vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
-+-.+..|....|.++++||-.+ +.+......+.+++.++.. . +..+|.+|+.++
T Consensus 115 qrv~la~al~~~p~vlllDEP~~-----------~LD~~~~~~l~~~l~~~~~---~-~~tiiivtH~~~ 169 (192)
T cd03232 115 KRLTIGVELAAKPSILFLDEPTS-----------GLDSQAAYNIVRFLKKLAD---S-GQAILCTIHQPS 169 (192)
T ss_pred HHHHHHHHHhcCCcEEEEeCCCc-----------CCCHHHHHHHHHHHHHHHH---c-CCEEEEEEcCCh
Confidence 33345556666799999999633 4455666677777766542 2 334555666543
No 470
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.12 E-value=0.014 Score=68.74 Aligned_cols=33 Identities=33% Similarity=0.567 Sum_probs=25.7
Q ss_pred hhhcCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 351 YEDLGAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 351 ~~~lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
++.+..++++| +.|+||+|+|||||++.+++..
T Consensus 338 l~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred ccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34444555555 8899999999999999999854
No 471
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.12 E-value=0.0041 Score=57.92 Aligned_cols=22 Identities=41% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
|+|.|+|||||||+|+.|+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 472
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.12 E-value=0.026 Score=69.13 Aligned_cols=98 Identities=20% Similarity=0.314 Sum_probs=57.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc---C--CCeEEeech----hhhhhhhcCchhHHHHHHHHHH----------hcCCeE
Q 047690 361 GALLVGPPGTGKTLLAKATAGES---G--VPFLSISGS----DFMEMFVGVGPSRVRNLFQEAR----------QCAPSI 421 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~---g--vpfi~vs~s----~~~~~~vG~~~~~vr~lF~~A~----------~~aP~I 421 (811)
-++|+|+||||||++++++...+ + .+++.+..+ .-+....|.....+..++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 47899999999999999986643 4 444443322 1122222333344444443210 123569
Q ss_pred EEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 422 IFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 422 LfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
|+|||+..+. ...+..|+..+ .....+|+++-.+...
T Consensus 420 lIvDEaSMvd---------------~~~~~~Ll~~~---~~~~rlilvGD~~QLp 456 (720)
T TIGR01448 420 LIVDESSMMD---------------TWLALSLLAAL---PDHARLLLVGDTDQLP 456 (720)
T ss_pred EEEeccccCC---------------HHHHHHHHHhC---CCCCEEEEECcccccc
Confidence 9999997761 22445555543 3456788888666433
No 473
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.12 E-value=0.014 Score=71.19 Aligned_cols=30 Identities=37% Similarity=0.514 Sum_probs=23.7
Q ss_pred cCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 354 LGAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 354 lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
....+++| +.|+||+|+|||||++.+++..
T Consensus 476 i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~ 507 (694)
T TIGR01846 476 LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY 507 (694)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33444444 8999999999999999999854
No 474
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.12 E-value=0.0079 Score=61.53 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.2
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
|+-++|+||+|+|||+|++.+..+.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 5568999999999999999998764
No 475
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.11 E-value=0.017 Score=60.09 Aligned_cols=23 Identities=52% Similarity=0.621 Sum_probs=18.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-+.+.||.|||||+||-+.|-++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999998754
No 476
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.11 E-value=0.065 Score=62.00 Aligned_cols=97 Identities=14% Similarity=0.213 Sum_probs=52.7
Q ss_pred cEEEEecCC-CCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHH
Q 047690 465 GVVVIAGTN-RPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCN 543 (811)
Q Consensus 465 ~VIVIaaTN-~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~Lvn 543 (811)
.-+||=..+ .|..++.+... +-.-..+.+-.+|.++-++-|....+..........+++. -..|..+-+
T Consensus 360 ~SvIIEGVHl~P~~i~~~~~~-~~~~i~flv~isdeeeH~~Rf~~Ra~~~~~~r~~~ky~~~---------f~~IR~IQd 429 (475)
T PRK12337 360 TSLVLEGVHLVPGYLRHPYQA-GALVVPMLVTLPDEALHRRRFELRDRETGASRPRERYLRH---------FEEIRLIQD 429 (475)
T ss_pred CeEEEECCCCCHHHHHHHHhc-CCceEEEEEEECCHHHHHHHHHHHhhhccCCCchhHHHHh---------HHHHHHHHH
Confidence 345554544 34444433322 1111235666778887777666666554333332222221 124444444
Q ss_pred HHHHHHHHcCCCccCHHHHHHHHHHHhc
Q 047690 544 EAALIAARGENSQVTMEHFEAAIDRVIG 571 (811)
Q Consensus 544 eAal~Aar~~~~~It~ed~~~Al~rvi~ 571 (811)
.....|...+-..|+..+++.+++.++.
T Consensus 430 yLv~~A~~~~ipvI~n~nid~tv~~~l~ 457 (475)
T PRK12337 430 HLLRLARQEGVPVLPGEDLDESIDKALE 457 (475)
T ss_pred HHHHHHHHcCCCeecCccHHHHHHHHHH
Confidence 4445566667788999999999988743
No 477
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.11 E-value=0.013 Score=65.73 Aligned_cols=23 Identities=48% Similarity=0.533 Sum_probs=21.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 478
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.027 Score=57.70 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=34.7
Q ss_pred CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcC
Q 047690 419 PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLR 484 (811)
Q Consensus 419 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlR 484 (811)
..+-++||-.+ +.+.+....++.++.+-- ..+=+||+||..|--++++..+
T Consensus 149 ~pLWiLDEP~t-----------aLDk~g~a~l~~l~~~H~----~~GGiVllttHq~l~~~~a~~~ 199 (209)
T COG4133 149 APLWILDEPFT-----------ALDKEGVALLTALMAAHA----AQGGIVLLTTHQPLPIASAQIR 199 (209)
T ss_pred CCceeecCccc-----------ccCHHHHHHHHHHHHHHh----cCCCEEEEecCCccCCCccceE
Confidence 34888899643 345566777888776632 2334788889988888777666
No 479
>PF13479 AAA_24: AAA domain
Probab=96.10 E-value=0.025 Score=58.90 Aligned_cols=68 Identities=25% Similarity=0.371 Sum_probs=39.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeE-Eeechhh-hhh------hhcCchhHHHHHHHHHH--hcCCeEEEEcCcc
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFL-SISGSDF-MEM------FVGVGPSRVRNLFQEAR--QCAPSIIFIDEID 428 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi-~vs~s~~-~~~------~vG~~~~~vr~lF~~A~--~~aP~ILfIDEID 428 (811)
+..++||||||+|||++|..+ +-|++ .+..... +.. +.=.+-..+.+.+..+. ...-.+|+||-++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 346899999999999999988 33332 2222200 000 00013344555554432 2334699999988
Q ss_pred hh
Q 047690 429 AI 430 (811)
Q Consensus 429 aL 430 (811)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 86
No 480
>PHA02774 E1; Provisional
Probab=96.08 E-value=0.0082 Score=70.66 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=27.4
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEE-eec
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLS-ISG 392 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~-vs~ 392 (811)
.+++|+||||||||++|.+|++.++..++. +|.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 479999999999999999999998655544 553
No 481
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.08 E-value=0.05 Score=55.52 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.2
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.-+.|.||+|+|||+|++++++..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999999864
No 482
>PRK14529 adenylate kinase; Provisional
Probab=96.08 E-value=0.023 Score=59.85 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=28.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
++|.||||+||||+++.||..++.+.+ +..+++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdllr 36 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIFR 36 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhhh
Confidence 789999999999999999999987765 4455543
No 483
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.07 E-value=0.035 Score=57.83 Aligned_cols=127 Identities=24% Similarity=0.383 Sum_probs=77.5
Q ss_pred hcCchhhhhcCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc---CCCeEEeech----hhhhh-----------------
Q 047690 345 LKNPRKYEDLGAKIPKG--ALLVGPPGTGKTLLAKATAGES---GVPFLSISGS----DFMEM----------------- 398 (811)
Q Consensus 345 Lk~p~~~~~lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s----~~~~~----------------- 398 (811)
..+.+.-+++|.-+|.| +++.|+.|||||.|.+.++--+ +....+++.. +|+.+
T Consensus 12 ~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l 91 (235)
T COG2874 12 SGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRL 91 (235)
T ss_pred CCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhccee
Confidence 44556667788777777 6789999999999999987632 3334333321 11110
Q ss_pred -h-------h----cCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcE
Q 047690 399 -F-------V----GVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGV 466 (811)
Q Consensus 399 -~-------v----G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~V 466 (811)
| + ....+.+..+.+..+.....||+||-+..+.... .+..+++++..+..+.....+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-----------~~~~vl~fm~~~r~l~d~gKv 160 (235)
T COG2874 92 LFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-----------SEDAVLNFMTFLRKLSDLGKV 160 (235)
T ss_pred EEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-----------cHHHHHHHHHHHHHHHhCCCE
Confidence 0 0 0112234445555555566899999999985321 134556666666666666666
Q ss_pred EEEecCCCCcccchhhcC
Q 047690 467 VVIAGTNRPDILDKALLR 484 (811)
Q Consensus 467 IVIaaTN~pd~LDpALlR 484 (811)
|++ |-+|+.++.+.+-
T Consensus 161 Iil--Tvhp~~l~e~~~~ 176 (235)
T COG2874 161 IIL--TVHPSALDEDVLT 176 (235)
T ss_pred EEE--EeChhhcCHHHHH
Confidence 555 3457788877765
No 484
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.022 Score=68.20 Aligned_cols=31 Identities=32% Similarity=0.498 Sum_probs=23.8
Q ss_pred hhhcCCCCC--CcEEEEcCCCCCHHHHHHHHHH
Q 047690 351 YEDLGAKIP--KGALLVGPPGTGKTLLAKATAG 381 (811)
Q Consensus 351 ~~~lg~~~p--kGvLL~GPPGTGKT~LAkAlA~ 381 (811)
++++...++ +.+-|+||+|+|||++|.-+-+
T Consensus 484 lk~lsfti~pGe~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 484 LKNLSFTIRPGEVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred hcCceeeeCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 444444444 4588999999999999999876
No 485
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.06 E-value=0.017 Score=64.00 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=62.1
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcC---------CCeEEeechhh------hhhh--hcCc---------------hhH
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESG---------VPFLSISGSDF------MEMF--VGVG---------------PSR 406 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~g---------vpfi~vs~s~~------~~~~--vG~~---------------~~~ 406 (811)
..-+.++||||+|||+|+..++..+. ...++++..+- .... .+.. ...
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~~~~~ 175 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAYNTDH 175 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecCChHH
Confidence 33478999999999999999876321 35677766441 1000 0111 111
Q ss_pred HHHHHHH----HHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecC
Q 047690 407 VRNLFQE----ARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGT 472 (811)
Q Consensus 407 vr~lF~~----A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaT 472 (811)
+..++.. .....+.+|+||-|-++.+..-.+. +.-..+...+.+++..+..+....++.||.+.
T Consensus 176 ~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~--~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 176 QLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR--GELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred HHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc--chHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 1112222 2334688999999999865421110 11123344566777666665555566666553
No 486
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.06 E-value=0.025 Score=63.35 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=64.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc---------CCCeEEeechh------hhhh--hhcC---------------chhHHH
Q 047690 361 GALLVGPPGTGKTLLAKATAGES---------GVPFLSISGSD------FMEM--FVGV---------------GPSRVR 408 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~---------gvpfi~vs~s~------~~~~--~vG~---------------~~~~vr 408 (811)
-++++|+||+|||.|+..+|-.+ +.+.++++... +.+. -.+. ....+.
T Consensus 125 i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~~e~~~ 204 (342)
T PLN03186 125 ITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYNTDHQS 204 (342)
T ss_pred EEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCCHHHHH
Confidence 36799999999999999887432 23677777654 1111 0011 011112
Q ss_pred HHHH----HHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC
Q 047690 409 NLFQ----EARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN 473 (811)
Q Consensus 409 ~lF~----~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN 473 (811)
.++. ......+.+|+||=|-++.+..-.+ .+....+...+.+++..|..+....++.||.+..
T Consensus 205 ~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~--~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 205 ELLLEAASMMAETRFALMIVDSATALYRTEFSG--RGELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred HHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 2222 2234568899999999987642111 1122344556778877776665556666766543
No 487
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.05 E-value=0.022 Score=60.89 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-+.|.||+|+|||||++.|++..
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999854
No 488
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.034 Score=62.94 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=39.7
Q ss_pred chHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechh
Q 047690 331 CDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSD 394 (811)
Q Consensus 331 ~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~ 394 (811)
.+++...+.+.+.. +.-+..+ ....++-++|+||+|+|||+++..+|..+ +..+..+++..
T Consensus 180 ~~~v~~~~~~~L~~~l~~~~~~---~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDt 244 (407)
T PRK12726 180 LDDITDWFVPYLSGKLAVEDSF---DLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDT 244 (407)
T ss_pred HHHHHHHHHHHhcCcEeeCCCc---eecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCc
Confidence 35666777766654 2222222 22345678999999999999999998755 55555565543
No 489
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.04 E-value=0.14 Score=54.54 Aligned_cols=138 Identities=11% Similarity=0.086 Sum_probs=94.1
Q ss_pred CCCCcEEEEcCCC-CCHHHHHHHHHHhcCC---------CeEEeechhhhhh-hhcCchhHHHHHHHHHHhc----CCeE
Q 047690 357 KIPKGALLVGPPG-TGKTLLAKATAGESGV---------PFLSISGSDFMEM-FVGVGPSRVRNLFQEARQC----APSI 421 (811)
Q Consensus 357 ~~pkGvLL~GPPG-TGKT~LAkAlA~e~gv---------pfi~vs~s~~~~~-~vG~~~~~vr~lF~~A~~~----aP~I 421 (811)
++....|+.|..+ ++|..++.-++..... .++.+....-... -...+-..+|++-+.+... ..-|
T Consensus 13 kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 13 KLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred cchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 3456789999998 9999998887775422 2333322110000 0012345677766655332 2359
Q ss_pred EEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHH
Q 047690 422 IFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKG 501 (811)
Q Consensus 422 LfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~e 501 (811)
++|+++|.+. ....|.||..++. +..++++|..|+.++.|.|.+++ |+ ..+.++.|+...
T Consensus 93 iII~~ae~mt---------------~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~ 152 (263)
T PRK06581 93 AIIYSAELMN---------------LNAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHA 152 (263)
T ss_pred EEEechHHhC---------------HHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHH
Confidence 9999999993 3466888888887 66778888888889999999999 88 588999999877
Q ss_pred HHHHHHHHHhhcc
Q 047690 502 RDQIFQVYLKKIK 514 (811)
Q Consensus 502 R~eIL~~~l~~~~ 514 (811)
-.+.....+....
T Consensus 153 ~~e~~~~~~~p~~ 165 (263)
T PRK06581 153 YNELYSQFIQPIA 165 (263)
T ss_pred HHHHHHHhccccc
Confidence 7777777665543
No 490
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=96.03 E-value=0.01 Score=66.32 Aligned_cols=69 Identities=22% Similarity=0.347 Sum_probs=46.9
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCC--CeEEeec-hhhh-------hhh------hcCchhHHHHHHHHHHhcCCeEE
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGV--PFLSISG-SDFM-------EMF------VGVGPSRVRNLFQEARQCAPSII 422 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gv--pfi~vs~-s~~~-------~~~------vG~~~~~vr~lF~~A~~~aP~IL 422 (811)
.++++++|++|+|||++++++.++..- ..+.+.. .++. ... .|.+.-.+.+++..+.++.|..|
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~I 257 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRI 257 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeE
Confidence 358999999999999999999986531 2222211 1111 000 12223457788899999999999
Q ss_pred EEcCc
Q 047690 423 FIDEI 427 (811)
Q Consensus 423 fIDEI 427 (811)
++.|+
T Consensus 258 ivGEi 262 (340)
T TIGR03819 258 VVGEV 262 (340)
T ss_pred EEeCc
Confidence 99998
No 491
>PRK01184 hypothetical protein; Provisional
Probab=96.00 E-value=0.006 Score=61.49 Aligned_cols=33 Identities=36% Similarity=0.596 Sum_probs=26.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
-|+|+||||+||||+++ ++.+.+.+++.. ++.+
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~--~d~l 35 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM--GDVI 35 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh--hHHH
Confidence 47899999999999998 788889887654 4543
No 492
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.99 E-value=0.0063 Score=64.79 Aligned_cols=33 Identities=33% Similarity=0.612 Sum_probs=24.8
Q ss_pred hhhhhcCCCCCCc--EEEEcCCCCCHHHHHHHHHH
Q 047690 349 RKYEDLGAKIPKG--ALLVGPPGTGKTLLAKATAG 381 (811)
Q Consensus 349 ~~~~~lg~~~pkG--vLL~GPPGTGKT~LAkAlA~ 381 (811)
....++...++.| +.|.||+||||||+.|.|-+
T Consensus 15 ~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc
Confidence 3334445556666 57899999999999999876
No 493
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.99 E-value=0.038 Score=57.28 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-+.|.||+|+|||||+++|++..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
No 494
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.98 E-value=0.019 Score=61.07 Aligned_cols=24 Identities=42% Similarity=0.663 Sum_probs=21.2
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
..++|.||+|+|||||++.+++-+
T Consensus 31 e~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 31 ERVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHcCcC
Confidence 348999999999999999999854
No 495
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.98 E-value=0.029 Score=58.08 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-+.|.||+|+|||||+++|++..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 37899999999999999999864
No 496
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.97 E-value=0.016 Score=69.25 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-+.|.|++|+|||||++.+++..
T Consensus 363 ~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 363 TVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 48999999999999999999854
No 497
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.97 E-value=0.029 Score=61.16 Aligned_cols=113 Identities=24% Similarity=0.374 Sum_probs=67.9
Q ss_pred CCc-EEEEcCCCCCHHHHHHHHHHhcCC----CeEEee-chhhh---------hhhhcCchhHHHHHHHHHHhcCCeEEE
Q 047690 359 PKG-ALLVGPPGTGKTLLAKATAGESGV----PFLSIS-GSDFM---------EMFVGVGPSRVRNLFQEARQCAPSIIF 423 (811)
Q Consensus 359 pkG-vLL~GPPGTGKT~LAkAlA~e~gv----pfi~vs-~s~~~---------~~~vG~~~~~vr~lF~~A~~~aP~ILf 423 (811)
|+| ||++||.|+||||..-++-...+. +.+.+. .-+|+ ..-+|..-......+..|.+..|+||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 566 678999999999988888876643 334332 11221 223444444455556666677899999
Q ss_pred EcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHH
Q 047690 424 IDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIK 500 (811)
Q Consensus 424 IDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~ 500 (811)
+-|+-.+ .++..-|..- ..+-+|++|-..-+ |... +||.|.+-++..+
T Consensus 204 vGEmRD~-----------------ETi~~ALtAA-----ETGHLV~~TLHT~s----A~~t---i~RiidvFp~~ek 251 (353)
T COG2805 204 VGEMRDL-----------------ETIRLALTAA-----ETGHLVFGTLHTNS----AAKT---IDRIIDVFPAEEK 251 (353)
T ss_pred EeccccH-----------------HHHHHHHHHH-----hcCCEEEEeccccc----HHHH---HHHHHHhCChhhh
Confidence 9998332 4555555542 35668888744322 3332 4555666555443
No 498
>PRK10263 DNA translocase FtsK; Provisional
Probab=95.97 E-value=0.027 Score=71.36 Aligned_cols=75 Identities=13% Similarity=0.271 Sum_probs=50.4
Q ss_pred eEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc--ccchhhcCCCCcceeeeccCC
Q 047690 420 SIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD--ILDKALLRPGRFDRQITIDKP 497 (811)
Q Consensus 420 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd--~LDpALlRpGRFdr~I~v~~P 497 (811)
-||+|||+..|.... .++.+..+. .+-......+|.+|.+|.+|+ .|...++. -|...|-+..-
T Consensus 1142 IVVIIDE~AdLm~~~--------~kevE~lI~----rLAqkGRAaGIHLILATQRPsvDVItg~IKA--N~ptRIAfrVs 1207 (1355)
T PRK10263 1142 IVVLVDEFADLMMTV--------GKKVEELIA----RLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVS 1207 (1355)
T ss_pred EEEEEcChHHHHhhh--------hHHHHHHHH----HHHHHhhhcCeEEEEEecCcccccchHHHHh--hccceEEEEcC
Confidence 389999998875321 223333333 333334567899999999986 56666666 67778888888
Q ss_pred CHHHHHHHHHH
Q 047690 498 DIKGRDQIFQV 508 (811)
Q Consensus 498 d~~eR~eIL~~ 508 (811)
+..+-+.||..
T Consensus 1208 S~~DSrtILd~ 1218 (1355)
T PRK10263 1208 SKIDSRTILDQ 1218 (1355)
T ss_pred CHHHHHHhcCC
Confidence 87777777643
No 499
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.96 E-value=0.014 Score=69.68 Aligned_cols=31 Identities=32% Similarity=0.532 Sum_probs=24.5
Q ss_pred hcCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 353 DLGAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 353 ~lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.+...+++| +.|+|++|+|||||++.+++..
T Consensus 359 ~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 359 NINLSVPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 334444444 8999999999999999999865
No 500
>PRK04182 cytidylate kinase; Provisional
Probab=95.96 E-value=0.0068 Score=60.22 Aligned_cols=28 Identities=39% Similarity=0.684 Sum_probs=26.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEE
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLS 389 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~ 389 (811)
|+|+|+||||||++++.+|..++.+++.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 7899999999999999999999998765
Done!