Query 047690
Match_columns 811
No_of_seqs 644 out of 4022
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 00:23:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 1.8E-88 6.3E-93 773.7 44.6 459 320-783 10-475 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 3.2E-86 1.1E-90 759.3 42.8 459 302-768 9-472 (499)
3 4b4t_J 26S protease regulatory 100.0 3.5E-52 1.2E-56 463.4 26.9 251 319-572 141-392 (405)
4 4b4t_I 26S protease regulatory 100.0 4.3E-51 1.5E-55 456.1 27.0 253 318-573 174-427 (437)
5 4b4t_H 26S protease regulatory 100.0 7.2E-51 2.5E-55 458.2 26.2 255 319-576 202-457 (467)
6 4b4t_M 26S protease regulatory 100.0 5.3E-50 1.8E-54 451.2 25.7 252 318-572 173-425 (434)
7 4b4t_L 26S protease subunit RP 100.0 1.1E-49 3.6E-54 449.1 27.2 251 319-572 174-425 (437)
8 2di4_A Zinc protease, cell div 100.0 1.1E-50 3.7E-55 422.0 15.6 211 570-781 1-218 (238)
9 4b4t_K 26S protease regulatory 100.0 6.7E-49 2.3E-53 441.9 28.0 251 318-571 164-416 (428)
10 3cf2_A TER ATPase, transitiona 100.0 1.9E-43 6.4E-48 423.1 18.0 246 320-571 198-461 (806)
11 3cf2_A TER ATPase, transitiona 100.0 3.6E-44 1.2E-48 429.2 10.2 249 319-570 470-744 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 3.9E-38 1.3E-42 329.7 28.8 251 320-573 6-256 (257)
13 2qz4_A Paraplegin; AAA+, SPG7, 100.0 6.7E-39 2.3E-43 334.1 20.3 261 321-581 1-261 (262)
14 2x8a_A Nuclear valosin-contain 100.0 4.6E-38 1.6E-42 335.1 19.4 248 320-571 4-266 (274)
15 3cf0_A Transitional endoplasmi 100.0 3.1E-37 1.1E-41 332.0 24.5 247 320-569 9-281 (301)
16 3h4m_A Proteasome-activating n 100.0 2.9E-36 1E-40 319.1 27.0 251 319-572 10-261 (285)
17 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.4E-35 4.6E-40 322.8 25.3 225 320-552 6-233 (322)
18 1ixz_A ATP-dependent metallopr 100.0 3.6E-35 1.2E-39 306.7 27.3 245 319-566 9-253 (254)
19 1iy2_A ATP-dependent metallopr 100.0 8.4E-35 2.9E-39 308.7 27.6 260 302-566 18-277 (278)
20 3eie_A Vacuolar protein sortin 100.0 2.2E-35 7.4E-40 320.4 21.5 226 319-552 11-238 (322)
21 2qp9_X Vacuolar protein sortin 100.0 2.1E-34 7.1E-39 317.5 25.0 225 320-552 45-271 (355)
22 2r62_A Cell division protease 100.0 7.2E-37 2.5E-41 321.4 5.2 251 320-572 5-256 (268)
23 3hu3_A Transitional endoplasmi 100.0 2.3E-34 7.8E-39 329.9 25.0 264 321-594 199-480 (489)
24 2zan_A Vacuolar protein sortin 100.0 3.4E-33 1.2E-37 316.7 21.0 225 320-552 128-355 (444)
25 3d8b_A Fidgetin-like protein 1 100.0 1.8E-31 6.3E-36 294.0 24.8 245 320-572 78-337 (357)
26 3b9p_A CG5977-PA, isoform A; A 100.0 6.6E-32 2.2E-36 287.7 20.2 242 320-569 15-272 (297)
27 3vfd_A Spastin; ATPase, microt 100.0 9.4E-31 3.2E-35 291.0 23.0 242 320-569 109-365 (389)
28 1ypw_A Transitional endoplasmi 100.0 8.4E-34 2.9E-38 343.0 -2.0 232 319-553 470-702 (806)
29 3t15_A Ribulose bisphosphate c 100.0 3.6E-30 1.2E-34 276.4 7.3 226 354-599 31-280 (293)
30 1ypw_A Transitional endoplasmi 100.0 6.8E-28 2.3E-32 291.5 24.3 244 320-569 198-459 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 1.2E-26 4.2E-31 263.6 -1.4 206 320-544 31-262 (456)
32 3syl_A Protein CBBX; photosynt 99.9 8.7E-23 3E-27 218.0 15.7 226 324-563 28-280 (309)
33 3uk6_A RUVB-like 2; hexameric 99.9 2.5E-22 8.6E-27 219.6 18.4 255 321-605 39-364 (368)
34 3pfi_A Holliday junction ATP-d 99.9 2.2E-20 7.4E-25 202.4 22.8 214 322-569 25-254 (338)
35 1ofh_A ATP-dependent HSL prote 99.8 5.5E-20 1.9E-24 195.3 16.4 237 326-568 15-298 (310)
36 1hqc_A RUVB; extended AAA-ATPa 99.8 1E-19 3.5E-24 195.2 17.9 218 322-569 8-238 (324)
37 1d2n_A N-ethylmaleimide-sensit 99.8 1.8E-19 6.1E-24 189.9 16.8 219 324-568 31-263 (272)
38 1g41_A Heat shock protein HSLU 99.8 1.5E-20 5E-25 212.3 6.9 170 326-508 15-190 (444)
39 3m6a_A ATP-dependent protease 99.8 2.4E-20 8.1E-25 216.5 7.5 225 322-568 77-340 (543)
40 2v1u_A Cell division control p 99.8 3E-18 1E-22 186.8 21.3 226 322-569 15-276 (387)
41 3hws_A ATP-dependent CLP prote 99.8 7.4E-19 2.5E-23 193.2 15.0 223 327-552 16-325 (363)
42 2z4s_A Chromosomal replication 99.8 2.4E-18 8.3E-23 194.8 19.5 222 320-570 99-333 (440)
43 2chg_A Replication factor C sm 99.8 1.7E-17 5.7E-22 165.5 22.2 202 321-567 12-224 (226)
44 3u61_B DNA polymerase accessor 99.8 4.4E-18 1.5E-22 183.3 16.1 203 322-568 22-236 (324)
45 1l8q_A Chromosomal replication 99.8 1.1E-17 3.7E-22 180.6 18.2 198 321-548 6-214 (324)
46 1g8p_A Magnesium-chelatase 38 99.8 3.9E-17 1.3E-21 176.8 21.5 220 320-571 18-324 (350)
47 3pvs_A Replication-associated 99.7 6.5E-18 2.2E-22 191.7 16.0 205 322-569 22-244 (447)
48 2qby_B CDC6 homolog 3, cell di 99.7 4.3E-17 1.5E-21 178.4 21.0 217 323-570 17-271 (384)
49 3bos_A Putative DNA replicatio 99.7 3.3E-17 1.1E-21 166.7 18.2 207 321-567 23-241 (242)
50 1njg_A DNA polymerase III subu 99.7 7.3E-17 2.5E-21 162.4 20.0 202 322-566 19-248 (250)
51 1sxj_A Activator 1 95 kDa subu 99.7 2.3E-17 7.7E-22 190.3 17.1 222 322-568 35-273 (516)
52 2r44_A Uncharacterized protein 99.7 2.6E-17 8.8E-22 178.1 16.1 215 324-572 25-300 (331)
53 2qby_A CDC6 homolog 1, cell di 99.7 2E-16 6.8E-21 172.0 21.7 226 322-570 16-273 (386)
54 1in4_A RUVB, holliday junction 99.7 4.2E-16 1.4E-20 169.8 23.6 213 323-569 22-250 (334)
55 1r6b_X CLPA protein; AAA+, N-t 99.7 3.4E-17 1.2E-21 196.7 15.9 223 323-571 183-435 (758)
56 1sxj_D Activator 1 41 kDa subu 99.7 5E-16 1.7E-20 168.0 21.3 207 321-567 32-261 (353)
57 1jbk_A CLPB protein; beta barr 99.7 2.5E-17 8.5E-22 160.5 9.4 159 322-506 18-194 (195)
58 1um8_A ATP-dependent CLP prote 99.7 8.6E-17 3E-21 177.4 14.7 236 327-566 22-362 (376)
59 3pxg_A Negative regulator of g 99.7 1.1E-16 3.7E-21 182.5 14.4 206 322-569 176-406 (468)
60 4fcw_A Chaperone protein CLPB; 99.7 2.9E-16 1E-20 167.3 15.3 203 326-549 17-278 (311)
61 2chq_A Replication factor C sm 99.7 3.9E-16 1.3E-20 166.0 15.1 201 321-566 12-223 (319)
62 1jr3_A DNA polymerase III subu 99.7 2E-15 6.9E-20 164.5 20.9 202 322-566 12-241 (373)
63 1sxj_B Activator 1 37 kDa subu 99.7 2.5E-15 8.4E-20 160.1 20.9 201 322-567 17-229 (323)
64 1fnn_A CDC6P, cell division co 99.7 2.6E-15 8.9E-20 164.1 21.5 224 322-570 13-275 (389)
65 1qvr_A CLPB protein; coiled co 99.6 6.1E-16 2.1E-20 188.5 15.8 205 322-552 166-395 (854)
66 3te6_A Regulatory protein SIR3 99.6 4.1E-16 1.4E-20 169.3 11.8 160 328-513 22-214 (318)
67 3pxi_A Negative regulator of g 99.6 1.3E-15 4.4E-20 183.2 16.8 198 325-547 490-722 (758)
68 3pxi_A Negative regulator of g 99.6 1.4E-15 4.9E-20 182.8 17.2 190 322-552 176-388 (758)
69 1iqp_A RFCS; clamp loader, ext 99.6 7E-15 2.4E-19 156.9 19.1 201 321-566 20-231 (327)
70 2bjv_A PSP operon transcriptio 99.6 3.7E-15 1.2E-19 156.2 15.5 209 323-562 3-250 (265)
71 1r6b_X CLPA protein; AAA+, N-t 99.6 1.6E-15 5.6E-20 182.1 14.5 195 326-547 458-713 (758)
72 2p65_A Hypothetical protein PF 99.6 8E-16 2.7E-20 149.9 8.9 151 323-498 19-187 (187)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 7.2E-16 2.5E-20 177.0 8.3 212 326-570 22-286 (500)
74 1ojl_A Transcriptional regulat 99.6 4.9E-15 1.7E-19 159.7 10.6 204 326-563 2-246 (304)
75 1sxj_C Activator 1 40 kDa subu 99.6 4.9E-14 1.7E-18 153.3 18.4 205 322-566 21-236 (340)
76 1sxj_E Activator 1 40 kDa subu 99.5 9.1E-14 3.1E-18 150.9 18.2 189 322-547 10-242 (354)
77 3f9v_A Minichromosome maintena 99.5 1.5E-15 5.2E-20 178.0 4.0 221 326-569 295-587 (595)
78 2lna_A AFG3-like protein 2; st 99.5 3.4E-14 1.2E-18 128.8 10.3 85 159-262 14-98 (99)
79 1qvr_A CLPB protein; coiled co 99.5 3.9E-14 1.3E-18 172.6 13.5 198 325-549 557-819 (854)
80 1w5s_A Origin recognition comp 99.5 8.3E-13 2.8E-17 145.6 21.1 229 323-569 19-293 (412)
81 3co5_A Putative two-component 99.4 6E-14 2.1E-18 134.3 6.2 112 327-475 5-116 (143)
82 3n70_A Transport activator; si 99.4 1.8E-13 6.2E-18 131.2 8.2 113 326-475 1-116 (145)
83 3k1j_A LON protease, ATP-depen 99.4 1.4E-12 4.9E-17 153.0 17.2 220 321-568 36-374 (604)
84 3cmw_A Protein RECA, recombina 99.4 2.2E-13 7.4E-18 173.7 9.8 155 320-475 1014-1218(1706)
85 1a5t_A Delta prime, HOLB; zinc 99.3 1.3E-11 4.5E-16 134.3 17.7 174 331-545 7-208 (334)
86 3kw6_A 26S protease regulatory 99.3 1.7E-11 5.8E-16 105.9 9.5 75 495-571 1-75 (78)
87 2krk_A 26S protease regulatory 99.2 1.8E-11 6.1E-16 108.2 9.2 78 493-572 7-84 (86)
88 1ny5_A Transcriptional regulat 99.2 7.1E-11 2.4E-15 131.4 15.1 211 325-566 136-384 (387)
89 3vlf_B 26S protease regulatory 99.2 2.2E-11 7.6E-16 107.9 8.6 79 498-578 2-80 (88)
90 2gno_A DNA polymerase III, gam 99.2 7.3E-11 2.5E-15 127.5 13.2 142 330-510 1-152 (305)
91 4akg_A Glutathione S-transfera 99.2 7.3E-11 2.5E-15 156.5 15.5 139 359-513 1267-1434(2695)
92 3ec2_A DNA replication protein 99.1 3E-10 1E-14 111.8 9.5 129 322-475 6-143 (180)
93 3aji_B S6C, proteasome (prosom 99.0 6.3E-10 2.2E-14 97.0 8.1 74 498-573 2-75 (83)
94 2vhj_A Ntpase P4, P4; non- hyd 98.9 3.8E-11 1.3E-15 130.2 -2.9 117 360-482 124-242 (331)
95 2dzn_B 26S protease regulatory 98.9 4.7E-10 1.6E-14 97.9 4.4 72 500-573 1-72 (82)
96 3dzd_A Transcriptional regulat 98.9 1.2E-08 4.2E-13 112.7 15.4 196 326-549 129-361 (368)
97 3f8t_A Predicted ATPase involv 98.9 4.2E-09 1.5E-13 119.1 11.5 215 327-570 214-484 (506)
98 2w58_A DNAI, primosome compone 98.9 2.3E-09 7.7E-14 107.2 8.0 102 322-430 21-127 (202)
99 2fna_A Conserved hypothetical 98.8 8E-08 2.8E-12 102.9 17.8 189 322-544 9-252 (357)
100 2kjq_A DNAA-related protein; s 98.8 1.9E-08 6.4E-13 97.2 9.4 104 359-494 36-145 (149)
101 2qen_A Walker-type ATPase; unk 98.7 3.5E-07 1.2E-11 97.8 19.6 193 322-543 8-247 (350)
102 2qgz_A Helicase loader, putati 98.6 1.7E-08 5.7E-13 108.9 5.7 97 323-430 121-226 (308)
103 4akg_A Glutathione S-transfera 98.6 3.1E-07 1.1E-11 122.3 16.7 127 359-507 645-790 (2695)
104 2r2a_A Uncharacterized protein 98.6 7.2E-08 2.5E-12 97.8 7.3 128 359-500 5-156 (199)
105 1svm_A Large T antigen; AAA+ f 98.5 1E-07 3.5E-12 105.8 5.7 119 355-496 165-284 (377)
106 3cmu_A Protein RECA, recombina 98.4 2.5E-07 8.6E-12 119.8 8.4 117 355-471 1423-1560(2050)
107 3vkg_A Dynein heavy chain, cyt 98.3 2.8E-06 9.6E-11 114.1 13.4 138 359-512 1304-1471(3245)
108 2c9o_A RUVB-like 1; hexameric 98.3 2.3E-06 8E-11 96.9 10.7 129 419-569 296-437 (456)
109 1jr3_D DNA polymerase III, del 98.2 4.3E-06 1.5E-10 90.5 9.9 179 357-568 16-208 (343)
110 1tue_A Replication protein E1; 98.0 5.7E-06 1.9E-10 84.4 6.2 28 360-387 59-86 (212)
111 1ye8_A Protein THEP1, hypothet 98.0 1.9E-05 6.6E-10 78.3 9.9 28 361-388 2-29 (178)
112 1u0j_A DNA replication protein 97.9 2.6E-05 8.9E-10 82.5 9.3 26 360-385 105-130 (267)
113 3vkg_A Dynein heavy chain, cyt 97.9 5.8E-05 2E-09 101.7 14.2 125 360-506 605-749 (3245)
114 2cvh_A DNA repair and recombin 97.8 3.3E-05 1.1E-09 77.2 7.1 35 360-394 21-55 (220)
115 1n0w_A DNA repair protein RAD5 97.7 0.0001 3.5E-09 74.8 9.1 73 360-432 25-133 (243)
116 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.00026 8.8E-09 70.9 11.4 33 360-392 24-59 (235)
117 1xp8_A RECA protein, recombina 97.6 0.00013 4.4E-09 80.6 9.1 116 356-471 71-207 (366)
118 2ehv_A Hypothetical protein PH 97.6 0.0003 1E-08 71.6 11.3 125 360-496 31-207 (251)
119 3hr8_A Protein RECA; alpha and 97.6 8.9E-05 3.1E-09 81.6 7.7 111 360-471 62-194 (356)
120 2z43_A DNA repair and recombin 97.6 0.00014 4.9E-09 78.5 9.0 112 358-471 106-254 (324)
121 3cmu_A Protein RECA, recombina 97.5 8.8E-05 3E-09 96.5 7.8 118 355-473 728-867 (2050)
122 2zr9_A Protein RECA, recombina 97.5 7.5E-05 2.6E-09 81.9 6.2 74 359-432 61-153 (349)
123 1qhx_A CPT, protein (chloramph 97.5 0.0001 3.5E-09 71.5 5.5 39 359-397 3-41 (178)
124 4a74_A DNA repair and recombin 97.4 0.00028 9.4E-09 70.9 8.4 23 361-383 27-49 (231)
125 1u94_A RECA protein, recombina 97.3 0.00022 7.7E-09 78.4 7.1 77 356-432 60-155 (356)
126 1v5w_A DMC1, meiotic recombina 97.3 0.00043 1.5E-08 75.5 9.0 111 361-473 124-272 (343)
127 1z6t_A APAF-1, apoptotic prote 97.3 0.0022 7.7E-08 74.0 15.5 167 324-534 122-321 (591)
128 1g41_A Heat shock protein HSLU 97.3 0.0014 4.7E-08 74.2 12.7 94 407-507 241-346 (444)
129 1pzn_A RAD51, DNA repair and r 97.2 0.00047 1.6E-08 75.5 8.1 113 360-474 132-285 (349)
130 3cmw_A Protein RECA, recombina 97.2 0.00022 7.5E-09 91.8 5.8 78 355-432 728-824 (1706)
131 3io5_A Recombination and repai 97.2 0.00047 1.6E-08 74.7 7.3 114 358-471 26-168 (333)
132 2i1q_A DNA repair and recombin 97.2 0.00057 1.9E-08 73.4 7.9 110 360-471 99-255 (322)
133 3sfz_A APAF-1, apoptotic pepti 97.2 0.0035 1.2E-07 78.0 15.9 170 323-534 121-321 (1249)
134 3dm5_A SRP54, signal recogniti 97.1 0.0034 1.2E-07 70.8 14.1 70 358-427 99-191 (443)
135 2p5t_B PEZT; postsegregational 97.1 0.0011 3.8E-08 68.8 9.2 41 356-396 29-69 (253)
136 3lda_A DNA repair protein RAD5 97.1 0.00088 3E-08 74.8 8.8 113 360-474 179-327 (400)
137 2orw_A Thymidine kinase; TMTK, 97.1 0.0002 6.8E-09 71.3 3.1 30 361-390 5-37 (184)
138 3trf_A Shikimate kinase, SK; a 97.1 0.00025 8.5E-09 69.2 3.8 41 359-401 5-45 (185)
139 2dr3_A UPF0273 protein PH0284; 97.1 0.0033 1.1E-07 63.5 11.9 35 359-393 23-60 (247)
140 2r8r_A Sensor protein; KDPD, P 97.1 0.0034 1.2E-07 64.8 11.9 32 361-392 8-42 (228)
141 3upu_A ATP-dependent DNA helic 97.1 0.0014 4.8E-08 74.1 9.9 124 321-474 19-166 (459)
142 2a5y_B CED-4; apoptosis; HET: 97.1 0.0046 1.6E-07 71.4 14.4 167 329-533 131-329 (549)
143 1tev_A UMP-CMP kinase; ploop, 97.0 0.0031 1E-07 61.3 10.7 36 359-396 3-38 (196)
144 1gvn_B Zeta; postsegregational 97.0 0.00078 2.7E-08 71.6 6.8 62 332-397 10-71 (287)
145 2b8t_A Thymidine kinase; deoxy 96.9 0.002 6.7E-08 66.4 9.0 69 362-430 15-101 (223)
146 3vaa_A Shikimate kinase, SK; s 96.9 0.00043 1.5E-08 68.9 3.9 38 359-398 25-62 (199)
147 2rhm_A Putative kinase; P-loop 96.9 0.00058 2E-08 66.8 4.6 33 357-389 3-35 (193)
148 1nlf_A Regulatory protein REPA 96.9 0.0007 2.4E-08 71.1 5.1 24 360-383 31-54 (279)
149 2iut_A DNA translocase FTSK; n 96.8 0.0062 2.1E-07 70.7 13.0 74 420-507 345-420 (574)
150 2ius_A DNA translocase FTSK; n 96.8 0.0029 9.8E-08 72.8 10.0 75 419-507 297-374 (512)
151 1zp6_A Hypothetical protein AT 96.8 0.00076 2.6E-08 66.0 4.6 38 359-396 9-46 (191)
152 3kb2_A SPBC2 prophage-derived 96.8 0.00069 2.4E-08 64.7 4.1 31 361-391 3-33 (173)
153 2iyv_A Shikimate kinase, SK; t 96.8 0.00062 2.1E-08 66.4 3.7 36 360-397 3-38 (184)
154 2zts_A Putative uncharacterize 96.8 0.0016 5.4E-08 66.0 6.8 34 359-392 30-67 (251)
155 1cr0_A DNA primase/helicase; R 96.8 0.002 6.8E-08 68.0 7.5 34 359-392 35-72 (296)
156 1kag_A SKI, shikimate kinase I 96.8 0.00085 2.9E-08 64.6 4.2 36 359-396 4-39 (173)
157 3crm_A TRNA delta(2)-isopenten 96.7 0.0017 5.7E-08 70.5 6.8 36 358-393 4-39 (323)
158 3iij_A Coilin-interacting nucl 96.7 0.00068 2.3E-08 66.0 3.4 32 359-390 11-42 (180)
159 1via_A Shikimate kinase; struc 96.7 0.00086 2.9E-08 65.1 4.1 34 361-396 6-39 (175)
160 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0022 7.5E-08 66.8 6.9 39 360-398 5-46 (260)
161 2cdn_A Adenylate kinase; phosp 96.7 0.0011 3.7E-08 65.8 4.2 34 357-390 18-51 (201)
162 1y63_A LMAJ004144AAA protein; 96.6 0.00091 3.1E-08 65.8 3.5 31 359-389 10-41 (184)
163 1ly1_A Polynucleotide kinase; 96.6 0.0009 3.1E-08 64.4 3.2 35 359-395 2-37 (181)
164 1qf9_A UMP/CMP kinase, protein 96.6 0.0013 4.4E-08 64.0 4.2 37 358-396 5-41 (194)
165 1zuh_A Shikimate kinase; alpha 96.6 0.0013 4.3E-08 63.3 4.1 31 360-390 8-38 (168)
166 3lw7_A Adenylate kinase relate 96.6 0.00095 3.3E-08 63.4 3.1 29 361-390 3-31 (179)
167 2ze6_A Isopentenyl transferase 96.6 0.0012 4.1E-08 68.7 4.1 32 361-392 3-34 (253)
168 4gp7_A Metallophosphoesterase; 96.6 0.0013 4.6E-08 64.0 4.1 19 361-379 11-29 (171)
169 2px0_A Flagellar biosynthesis 96.6 0.009 3.1E-07 63.8 10.9 92 332-426 79-190 (296)
170 2r6a_A DNAB helicase, replicat 96.5 0.0028 9.7E-08 71.5 7.2 38 355-392 199-240 (454)
171 2cbz_A Multidrug resistance-as 96.5 0.0076 2.6E-07 62.2 9.8 29 355-383 25-55 (237)
172 3t61_A Gluconokinase; PSI-biol 96.5 0.0018 6.1E-08 64.3 4.8 31 359-389 18-48 (202)
173 3jvv_A Twitching mobility prot 96.5 0.0012 4.1E-08 72.6 3.8 67 361-427 125-205 (356)
174 2i3b_A HCR-ntpase, human cance 96.5 0.0042 1.4E-07 62.1 7.5 22 362-383 4-25 (189)
175 2eyu_A Twitching motility prot 96.5 0.0016 5.4E-08 68.4 4.4 66 361-427 27-107 (261)
176 1e6c_A Shikimate kinase; phosp 96.5 0.0017 5.8E-08 62.3 4.3 35 360-396 3-37 (173)
177 1vma_A Cell division protein F 96.5 0.019 6.4E-07 61.8 12.8 94 334-427 79-195 (306)
178 2c95_A Adenylate kinase 1; tra 96.5 0.0014 4.8E-08 64.1 3.5 32 359-390 9-40 (196)
179 2vli_A Antibiotic resistance p 96.4 0.0013 4.6E-08 63.6 3.2 30 359-388 5-34 (183)
180 3dl0_A Adenylate kinase; phosp 96.4 0.0015 5.1E-08 65.5 3.6 29 362-390 3-31 (216)
181 3e1s_A Exodeoxyribonuclease V, 96.4 0.0027 9.4E-08 74.0 6.2 97 360-474 205-317 (574)
182 2bwj_A Adenylate kinase 5; pho 96.4 0.0015 5E-08 64.2 3.2 36 359-396 12-47 (199)
183 3fb4_A Adenylate kinase; psych 96.4 0.0016 5.5E-08 65.1 3.5 29 362-390 3-31 (216)
184 1aky_A Adenylate kinase; ATP:A 96.4 0.0021 7.1E-08 64.8 4.3 36 359-396 4-39 (220)
185 3cm0_A Adenylate kinase; ATP-b 96.4 0.0018 6.3E-08 62.9 3.7 29 361-389 6-34 (186)
186 2pez_A Bifunctional 3'-phospho 96.4 0.0026 9E-08 61.8 4.8 37 359-395 5-44 (179)
187 2q6t_A DNAB replication FORK h 96.4 0.0052 1.8E-07 69.2 7.8 38 355-392 196-237 (444)
188 1zd8_A GTP:AMP phosphotransfer 96.4 0.0016 5.5E-08 66.0 3.3 32 359-390 7-38 (227)
189 2pt5_A Shikimate kinase, SK; a 96.3 0.0025 8.6E-08 60.9 4.3 29 361-389 2-30 (168)
190 1kht_A Adenylate kinase; phosp 96.3 0.0019 6.5E-08 62.7 3.5 25 360-384 4-28 (192)
191 3gfo_A Cobalt import ATP-bindi 96.3 0.013 4.5E-07 62.0 10.0 57 408-478 151-207 (275)
192 1ex7_A Guanylate kinase; subst 96.3 0.0035 1.2E-07 62.7 5.2 24 360-383 2-25 (186)
193 3bh0_A DNAB-like replicative h 96.3 0.0071 2.4E-07 64.9 8.0 38 355-392 64-104 (315)
194 3be4_A Adenylate kinase; malar 96.3 0.002 7E-08 64.9 3.5 35 360-396 6-40 (217)
195 1nks_A Adenylate kinase; therm 96.2 0.0027 9.2E-08 61.6 4.1 36 361-396 3-41 (194)
196 2ewv_A Twitching motility prot 96.2 0.0043 1.5E-07 68.4 6.2 68 360-427 137-218 (372)
197 1ukz_A Uridylate kinase; trans 96.2 0.0021 7.3E-08 63.6 3.4 36 359-396 15-50 (203)
198 2ga8_A Hypothetical 39.9 kDa p 96.2 0.0013 4.4E-08 72.3 1.8 54 329-390 2-55 (359)
199 1ak2_A Adenylate kinase isoenz 96.2 0.0029 1E-07 64.5 4.4 36 359-396 16-51 (233)
200 3tlx_A Adenylate kinase 2; str 96.2 0.0021 7E-08 66.4 3.3 37 358-396 28-64 (243)
201 1knq_A Gluconate kinase; ALFA/ 96.2 0.0028 9.5E-08 61.2 3.9 34 360-395 9-42 (175)
202 1jjv_A Dephospho-COA kinase; P 96.2 0.0059 2E-07 60.6 6.4 33 361-396 4-36 (206)
203 2fz4_A DNA repair protein RAD2 96.2 0.0084 2.9E-07 61.6 7.7 33 361-393 110-142 (237)
204 1zak_A Adenylate kinase; ATP:A 96.2 0.0024 8.2E-08 64.4 3.5 36 359-396 5-40 (222)
205 4eun_A Thermoresistant glucoki 96.2 0.0032 1.1E-07 62.6 4.3 35 359-395 29-63 (200)
206 4g1u_C Hemin import ATP-bindin 96.2 0.01 3.5E-07 62.4 8.3 56 408-477 149-210 (266)
207 1s96_A Guanylate kinase, GMP k 96.1 0.0095 3.2E-07 60.8 7.8 24 361-384 18-41 (219)
208 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0022 7.6E-08 69.6 3.2 69 360-428 172-250 (330)
209 2ff7_A Alpha-hemolysin translo 96.1 0.016 5.5E-07 60.2 9.6 29 355-383 29-59 (247)
210 3umf_A Adenylate kinase; rossm 96.1 0.0028 9.6E-08 64.9 3.7 39 357-397 27-65 (217)
211 3kl4_A SRP54, signal recogniti 96.1 0.025 8.5E-07 63.7 11.6 71 358-428 96-189 (433)
212 2pbr_A DTMP kinase, thymidylat 96.1 0.0044 1.5E-07 60.2 4.7 30 362-391 3-35 (195)
213 2ixe_A Antigen peptide transpo 96.1 0.021 7.3E-07 60.1 10.2 30 354-383 38-69 (271)
214 1e4v_A Adenylate kinase; trans 96.0 0.0034 1.2E-07 63.0 3.8 29 362-390 3-31 (214)
215 2if2_A Dephospho-COA kinase; a 96.0 0.0087 3E-07 59.2 6.6 34 361-397 3-36 (204)
216 3uie_A Adenylyl-sulfate kinase 96.0 0.0059 2E-07 60.6 5.1 37 359-395 25-64 (200)
217 1cke_A CK, MSSA, protein (cyti 95.9 0.0043 1.5E-07 62.3 4.1 30 360-389 6-35 (227)
218 3rlf_A Maltose/maltodextrin im 95.9 0.0059 2E-07 67.7 5.4 29 355-383 23-53 (381)
219 1g5t_A COB(I)alamin adenosyltr 95.9 0.041 1.4E-06 55.5 11.1 70 361-430 30-132 (196)
220 3sr0_A Adenylate kinase; phosp 95.9 0.0043 1.5E-07 62.9 3.9 33 362-396 3-35 (206)
221 1v43_A Sugar-binding transport 95.9 0.012 4.2E-07 64.9 7.8 29 355-383 31-61 (372)
222 2jaq_A Deoxyguanosine kinase; 95.9 0.0043 1.5E-07 60.9 3.7 28 362-389 3-30 (205)
223 2v54_A DTMP kinase, thymidylat 95.9 0.0051 1.8E-07 60.5 4.3 33 359-391 4-37 (204)
224 2z0h_A DTMP kinase, thymidylat 95.8 0.0063 2.2E-07 59.4 4.6 30 362-391 3-35 (197)
225 3ake_A Cytidylate kinase; CMP 95.8 0.0065 2.2E-07 59.9 4.7 30 361-390 4-33 (208)
226 1z47_A CYSA, putative ABC-tran 95.8 0.024 8.2E-07 62.2 9.4 22 362-383 44-65 (355)
227 2xb4_A Adenylate kinase; ATP-b 95.8 0.0054 1.8E-07 62.2 3.9 33 362-396 3-35 (223)
228 1tf7_A KAIC; homohexamer, hexa 95.7 0.031 1.1E-06 64.2 10.6 103 361-474 283-416 (525)
229 3fvq_A Fe(3+) IONS import ATP- 95.7 0.019 6.4E-07 63.2 8.2 29 355-383 24-54 (359)
230 1g29_1 MALK, maltose transport 95.7 0.016 5.5E-07 64.0 7.7 22 362-383 32-53 (372)
231 3nh6_A ATP-binding cassette SU 95.7 0.028 9.6E-07 60.4 9.4 29 355-383 74-104 (306)
232 2yyz_A Sugar ABC transporter, 95.6 0.026 8.8E-07 62.0 9.0 29 355-383 23-53 (359)
233 3ney_A 55 kDa erythrocyte memb 95.6 0.0098 3.3E-07 60.0 5.1 25 359-383 19-43 (197)
234 1uf9_A TT1252 protein; P-loop, 95.6 0.0076 2.6E-07 59.2 4.2 35 359-396 8-42 (203)
235 2bbw_A Adenylate kinase 4, AK4 95.6 0.0074 2.5E-07 61.9 4.3 31 359-389 27-57 (246)
236 1uj2_A Uridine-cytidine kinase 95.6 0.0089 3E-07 61.7 4.9 38 359-396 22-67 (252)
237 3b6e_A Interferon-induced heli 95.6 0.041 1.4E-06 54.1 9.4 23 360-382 49-71 (216)
238 1vt4_I APAF-1 related killer D 95.5 0.03 1E-06 69.3 9.8 43 329-382 131-173 (1221)
239 1ltq_A Polynucleotide kinase; 95.5 0.025 8.5E-07 59.5 7.9 38 359-398 2-40 (301)
240 3tui_C Methionine import ATP-b 95.5 0.013 4.4E-07 64.6 5.8 55 408-476 171-225 (366)
241 2wwf_A Thymidilate kinase, put 95.5 0.0038 1.3E-07 61.9 1.5 29 359-387 10-38 (212)
242 3r20_A Cytidylate kinase; stru 95.5 0.0087 3E-07 62.0 4.1 31 359-389 9-39 (233)
243 2plr_A DTMP kinase, probable t 95.4 0.011 3.6E-07 58.4 4.5 30 360-389 5-36 (213)
244 3thx_B DNA mismatch repair pro 95.4 0.039 1.4E-06 67.6 10.4 106 360-479 674-800 (918)
245 2qor_A Guanylate kinase; phosp 95.4 0.012 4.2E-07 58.5 5.0 27 358-384 11-37 (204)
246 3nwj_A ATSK2; P loop, shikimat 95.3 0.0093 3.2E-07 62.3 4.0 31 360-390 49-79 (250)
247 1q57_A DNA primase/helicase; d 95.3 0.023 7.9E-07 64.7 7.6 39 355-393 238-280 (503)
248 2grj_A Dephospho-COA kinase; T 95.3 0.015 5E-07 58.3 5.2 35 361-397 14-48 (192)
249 1nn5_A Similar to deoxythymidy 95.3 0.0054 1.8E-07 60.8 2.0 26 359-384 9-34 (215)
250 2nq2_C Hypothetical ABC transp 95.3 0.026 9E-07 58.8 7.2 22 362-383 34-55 (253)
251 3bgw_A DNAB-like replicative h 95.3 0.034 1.1E-06 62.8 8.5 38 355-392 193-233 (444)
252 3c8u_A Fructokinase; YP_612366 95.3 0.013 4.3E-07 58.6 4.5 25 360-384 23-47 (208)
253 3tau_A Guanylate kinase, GMP k 95.2 0.015 5E-07 58.3 4.9 26 359-384 8-33 (208)
254 1tf7_A KAIC; homohexamer, hexa 95.2 0.048 1.6E-06 62.6 9.8 109 360-478 40-188 (525)
255 2yvu_A Probable adenylyl-sulfa 95.2 0.017 5.7E-07 56.4 5.1 37 359-395 13-52 (186)
256 4a1f_A DNAB helicase, replicat 95.2 0.05 1.7E-06 59.3 9.3 36 357-392 44-82 (338)
257 3a8t_A Adenylate isopentenyltr 95.2 0.0089 3.1E-07 65.2 3.3 35 360-394 41-75 (339)
258 2h92_A Cytidylate kinase; ross 95.1 0.014 4.7E-07 58.4 4.3 32 359-390 3-34 (219)
259 3foz_A TRNA delta(2)-isopenten 95.1 0.011 3.7E-07 63.9 3.7 37 358-394 9-45 (316)
260 3b5x_A Lipid A export ATP-bind 95.1 0.04 1.4E-06 64.1 8.8 31 353-383 361-393 (582)
261 3qf4_B Uncharacterized ABC tra 95.1 0.083 2.8E-06 61.7 11.4 56 407-478 498-553 (598)
262 2axn_A 6-phosphofructo-2-kinas 95.1 0.042 1.4E-06 63.3 8.8 42 359-400 35-79 (520)
263 1oxx_K GLCV, glucose, ABC tran 95.1 0.016 5.5E-07 63.5 5.1 29 355-383 25-55 (353)
264 1m7g_A Adenylylsulfate kinase; 95.1 0.014 4.7E-07 58.5 4.1 38 359-396 25-66 (211)
265 2oap_1 GSPE-2, type II secreti 95.1 0.018 6.1E-07 66.2 5.6 69 359-427 260-342 (511)
266 3llm_A ATP-dependent RNA helic 95.1 0.088 3E-06 53.5 10.2 21 360-380 77-97 (235)
267 4f4c_A Multidrug resistance pr 95.0 0.019 6.5E-07 73.2 6.2 32 352-383 435-468 (1321)
268 1vht_A Dephospho-COA kinase; s 95.0 0.014 4.7E-07 58.5 3.9 30 359-389 4-33 (218)
269 2bdt_A BH3686; alpha-beta prot 95.0 0.019 6.4E-07 56.1 4.8 35 361-396 4-38 (189)
270 2qt1_A Nicotinamide riboside k 95.0 0.01 3.5E-07 58.9 2.9 33 361-395 23-56 (207)
271 2it1_A 362AA long hypothetical 95.0 0.039 1.3E-06 60.7 7.8 28 356-383 24-53 (362)
272 3zvl_A Bifunctional polynucleo 95.0 0.022 7.5E-07 63.6 5.8 36 358-395 257-292 (416)
273 1w36_D RECD, exodeoxyribonucle 94.9 0.026 8.8E-07 66.2 6.5 23 360-382 165-187 (608)
274 4e22_A Cytidylate kinase; P-lo 94.9 0.014 4.8E-07 60.4 3.8 28 361-388 29-56 (252)
275 3d31_A Sulfate/molybdate ABC t 94.9 0.017 5.7E-07 63.3 4.5 28 356-383 21-50 (348)
276 1q3t_A Cytidylate kinase; nucl 94.9 0.018 6.2E-07 58.7 4.4 31 359-389 16-46 (236)
277 3gmt_A Adenylate kinase; ssgci 94.9 0.044 1.5E-06 56.5 7.3 33 362-396 11-43 (230)
278 4a82_A Cystic fibrosis transme 94.9 0.086 3E-06 61.3 10.7 30 354-383 360-391 (578)
279 2j41_A Guanylate kinase; GMP, 94.8 0.016 5.4E-07 57.0 3.8 25 359-383 6-30 (207)
280 2gxq_A Heat resistant RNA depe 94.8 0.12 4.2E-06 50.5 10.2 17 360-376 39-55 (207)
281 1kgd_A CASK, peripheral plasma 94.7 0.019 6.3E-07 56.1 3.8 25 360-384 6-30 (180)
282 3b60_A Lipid A export ATP-bind 94.7 0.073 2.5E-06 61.9 9.5 31 353-383 361-393 (582)
283 2j37_W Signal recognition part 94.7 0.15 5.1E-06 58.5 11.7 35 358-392 100-137 (504)
284 3e70_C DPA, signal recognition 94.7 0.079 2.7E-06 57.4 9.0 26 358-383 128-153 (328)
285 3qf4_A ABC transporter, ATP-bi 94.6 0.034 1.1E-06 64.9 6.4 29 355-383 363-393 (587)
286 3thx_A DNA mismatch repair pro 94.6 0.079 2.7E-06 65.1 9.8 22 360-381 663-684 (934)
287 1rz3_A Hypothetical protein rb 94.6 0.055 1.9E-06 53.7 7.1 36 360-395 23-61 (201)
288 2yhs_A FTSY, cell division pro 94.6 0.29 9.8E-06 56.0 13.7 25 359-383 293-317 (503)
289 2f6r_A COA synthase, bifunctio 94.5 0.018 6.3E-07 60.7 3.6 35 359-396 75-109 (281)
290 3d3q_A TRNA delta(2)-isopenten 94.5 0.018 6.1E-07 62.9 3.4 32 360-391 8-39 (340)
291 1x6v_B Bifunctional 3'-phospho 94.5 0.038 1.3E-06 65.0 6.4 37 359-395 52-91 (630)
292 1qde_A EIF4A, translation init 94.5 0.3 1E-05 48.5 12.2 54 320-375 11-67 (224)
293 1hv8_A Putative ATP-dependent 94.4 0.23 7.7E-06 52.6 11.9 57 323-381 6-66 (367)
294 3fdi_A Uncharacterized protein 94.4 0.024 8.3E-07 56.8 4.1 29 361-389 8-36 (201)
295 3exa_A TRNA delta(2)-isopenten 94.4 0.021 7.3E-07 61.7 3.8 34 360-393 4-37 (322)
296 3tr0_A Guanylate kinase, GMP k 94.3 0.022 7.4E-07 56.0 3.3 23 361-383 9-31 (205)
297 1w4r_A Thymidine kinase; type 94.3 0.031 1.1E-06 56.3 4.4 67 362-430 23-103 (195)
298 4aby_A DNA repair protein RECN 94.3 0.092 3.2E-06 57.8 8.7 32 352-383 52-84 (415)
299 2qmh_A HPR kinase/phosphorylas 94.3 0.02 6.8E-07 58.0 3.0 32 359-391 34-65 (205)
300 3j16_B RLI1P; ribosome recycli 94.3 0.045 1.5E-06 64.2 6.4 22 362-383 381-402 (608)
301 3a00_A Guanylate kinase, GMP k 94.2 0.026 8.8E-07 55.4 3.6 24 360-383 2-25 (186)
302 3asz_A Uridine kinase; cytidin 94.2 0.022 7.5E-07 56.5 3.0 25 360-384 7-31 (211)
303 3ozx_A RNAse L inhibitor; ATP 94.2 0.1 3.5E-06 60.3 9.0 57 406-476 391-447 (538)
304 1ls1_A Signal recognition part 94.2 0.3 1E-05 51.8 12.0 35 358-392 97-134 (295)
305 2xxa_A Signal recognition part 94.1 0.12 4.1E-06 58.1 9.3 71 357-427 98-192 (433)
306 1zu4_A FTSY; GTPase, signal re 94.1 0.11 3.8E-06 56.0 8.6 36 357-392 103-141 (320)
307 1p9r_A General secretion pathw 94.1 0.1 3.5E-06 58.5 8.5 66 362-427 170-245 (418)
308 2v3c_C SRP54, signal recogniti 94.1 0.081 2.8E-06 59.5 7.7 36 358-393 98-136 (432)
309 1lvg_A Guanylate kinase, GMP k 94.1 0.037 1.3E-06 55.1 4.4 25 359-383 4-28 (198)
310 3ozx_A RNAse L inhibitor; ATP 94.0 0.084 2.9E-06 61.0 8.0 33 351-383 14-49 (538)
311 1z6g_A Guanylate kinase; struc 94.0 0.027 9.2E-07 57.0 3.4 31 353-383 15-47 (218)
312 2xau_A PRE-mRNA-splicing facto 93.9 0.093 3.2E-06 63.2 8.4 23 360-382 110-132 (773)
313 1xx6_A Thymidine kinase; NESG, 93.9 0.094 3.2E-06 52.4 6.9 69 361-430 10-93 (191)
314 3iuy_A Probable ATP-dependent 93.8 0.17 5.9E-06 50.6 8.9 57 319-377 15-75 (228)
315 1wb9_A DNA mismatch repair pro 93.8 0.13 4.4E-06 62.2 9.3 23 360-382 608-630 (800)
316 1j8m_F SRP54, signal recogniti 93.7 0.15 5.1E-06 54.4 8.6 69 359-427 98-189 (297)
317 4f4c_A Multidrug resistance pr 93.7 0.04 1.4E-06 70.2 4.8 22 362-383 1108-1129(1321)
318 1t6n_A Probable ATP-dependent 93.6 0.57 1.9E-05 46.4 12.3 58 322-381 13-73 (220)
319 4b3f_X DNA-binding protein smu 93.6 0.093 3.2E-06 61.7 7.4 33 362-394 208-243 (646)
320 2gza_A Type IV secretion syste 93.6 0.054 1.8E-06 59.3 5.0 69 360-428 176-262 (361)
321 2jeo_A Uridine-cytidine kinase 93.5 0.039 1.3E-06 56.6 3.6 31 356-386 20-52 (245)
322 2yl4_A ATP-binding cassette SU 93.5 0.074 2.5E-06 62.0 6.3 32 352-383 361-394 (595)
323 1s2m_A Putative ATP-dependent 93.5 0.33 1.1E-05 52.4 11.1 57 321-379 19-78 (400)
324 3j16_B RLI1P; ribosome recycli 93.4 0.12 4.1E-06 60.6 8.0 22 362-383 106-127 (608)
325 1odf_A YGR205W, hypothetical 3 93.4 0.043 1.5E-06 58.4 3.8 38 358-395 30-73 (290)
326 3b9q_A Chloroplast SRP recepto 93.4 0.072 2.5E-06 57.0 5.5 26 358-383 99-124 (302)
327 2ffh_A Protein (FFH); SRP54, s 93.4 0.22 7.6E-06 55.8 9.7 35 358-392 97-134 (425)
328 1c9k_A COBU, adenosylcobinamid 93.3 0.056 1.9E-06 53.7 4.2 32 362-394 2-33 (180)
329 1bif_A 6-phosphofructo-2-kinas 93.3 0.17 5.7E-06 57.2 8.6 40 359-398 39-81 (469)
330 3fe2_A Probable ATP-dependent 93.2 0.28 9.4E-06 49.8 9.4 55 321-377 27-84 (242)
331 3eph_A TRNA isopentenyltransfe 93.2 0.039 1.3E-06 61.5 3.2 33 360-392 3-35 (409)
332 3lnc_A Guanylate kinase, GMP k 93.2 0.041 1.4E-06 55.6 3.2 23 361-383 29-52 (231)
333 2oxc_A Probable ATP-dependent 93.2 0.18 6.3E-06 50.7 7.9 55 320-376 21-78 (230)
334 1ewq_A DNA mismatch repair pro 93.1 0.25 8.4E-06 59.5 10.1 23 360-382 577-599 (765)
335 3hdt_A Putative kinase; struct 93.0 0.055 1.9E-06 55.4 3.6 29 361-389 16-44 (223)
336 1a7j_A Phosphoribulokinase; tr 93.0 0.038 1.3E-06 58.7 2.5 36 361-396 7-45 (290)
337 1znw_A Guanylate kinase, GMP k 92.9 0.05 1.7E-06 54.2 3.3 24 361-384 22-45 (207)
338 1htw_A HI0065; nucleotide-bind 92.9 0.064 2.2E-06 51.9 3.7 22 362-383 36-57 (158)
339 3kta_A Chromosome segregation 92.8 0.056 1.9E-06 52.2 3.3 24 361-384 28-51 (182)
340 1gtv_A TMK, thymidylate kinase 92.8 0.024 8.1E-07 56.1 0.6 23 362-384 3-25 (214)
341 2zj8_A DNA helicase, putative 92.7 0.22 7.6E-06 59.1 8.9 18 359-376 39-56 (720)
342 2og2_A Putative signal recogni 92.7 0.1 3.4E-06 57.4 5.4 52 332-383 127-181 (359)
343 3bk7_A ABC transporter ATP-bin 92.6 0.15 5E-06 59.9 7.1 22 362-383 385-406 (607)
344 3pey_A ATP-dependent RNA helic 92.6 0.6 2E-05 49.8 11.4 20 359-378 44-63 (395)
345 2z0m_A 337AA long hypothetical 92.4 0.46 1.6E-05 49.6 10.0 33 360-392 32-64 (337)
346 2iw3_A Elongation factor 3A; a 92.3 0.16 5.6E-06 62.5 7.2 20 362-381 464-483 (986)
347 3sqw_A ATP-dependent RNA helic 92.3 0.39 1.3E-05 55.3 10.1 56 320-375 14-76 (579)
348 2v9p_A Replication protein E1; 92.3 0.081 2.8E-06 56.8 3.9 24 360-383 127-150 (305)
349 4eaq_A DTMP kinase, thymidylat 92.3 0.099 3.4E-06 53.4 4.5 30 361-390 28-59 (229)
350 2va8_A SSO2462, SKI2-type heli 92.2 0.23 8E-06 58.8 8.3 20 358-377 45-64 (715)
351 1vec_A ATP-dependent RNA helic 92.2 0.37 1.3E-05 47.1 8.3 18 360-377 41-58 (206)
352 1m8p_A Sulfate adenylyltransfe 92.1 0.086 2.9E-06 61.4 4.2 37 359-395 396-436 (573)
353 3t1o_A Gliding protein MGLA; G 92.1 0.42 1.4E-05 45.6 8.5 23 361-383 16-38 (198)
354 3bor_A Human initiation factor 92.0 0.15 5.2E-06 51.6 5.5 56 320-377 27-85 (237)
355 2o8b_B DNA mismatch repair pro 91.9 0.23 7.7E-06 61.7 7.8 21 360-380 790-810 (1022)
356 2pl3_A Probable ATP-dependent 91.9 0.56 1.9E-05 47.0 9.5 52 323-376 25-79 (236)
357 1xti_A Probable ATP-dependent 91.8 0.55 1.9E-05 50.3 10.0 56 323-380 8-66 (391)
358 1wp9_A ATP-dependent RNA helic 91.8 0.33 1.1E-05 52.9 8.3 32 361-392 25-60 (494)
359 2ged_A SR-beta, signal recogni 91.8 0.15 5.1E-06 49.1 4.9 47 331-383 26-72 (193)
360 1sq5_A Pantothenate kinase; P- 91.8 0.072 2.5E-06 56.8 2.9 24 361-384 82-105 (308)
361 1sky_E F1-ATPase, F1-ATP synth 91.7 0.094 3.2E-06 59.6 3.7 23 361-383 153-175 (473)
362 3g5u_A MCG1178, multidrug resi 91.6 0.48 1.6E-05 60.2 10.5 31 353-383 408-440 (1284)
363 3tqf_A HPR(Ser) kinase; transf 91.6 0.11 3.7E-06 51.6 3.6 28 359-387 16-43 (181)
364 3ux8_A Excinuclease ABC, A sub 91.5 0.28 9.6E-06 57.9 7.8 66 407-494 550-618 (670)
365 3p32_A Probable GTPase RV1496/ 91.3 0.26 8.9E-06 53.6 6.8 32 360-391 80-114 (355)
366 2p6r_A Afuhel308 helicase; pro 91.3 0.22 7.4E-06 59.0 6.6 34 359-392 40-76 (702)
367 3vkw_A Replicase large subunit 91.3 0.26 9.1E-06 55.5 6.8 22 361-382 163-184 (446)
368 3q72_A GTP-binding protein RAD 91.2 0.19 6.3E-06 46.9 4.8 21 361-381 4-24 (166)
369 3i5x_A ATP-dependent RNA helic 91.2 0.59 2E-05 53.3 9.8 17 359-375 111-127 (563)
370 3tqc_A Pantothenate kinase; bi 91.2 0.2 6.9E-06 54.1 5.6 38 358-395 91-133 (321)
371 2pcj_A ABC transporter, lipopr 91.1 0.085 2.9E-06 53.8 2.5 22 362-383 33-54 (224)
372 3g5u_A MCG1178, multidrug resi 91.1 0.32 1.1E-05 61.9 8.2 57 406-478 1177-1233(1284)
373 3b85_A Phosphate starvation-in 91.1 0.087 3E-06 53.2 2.5 22 361-382 24-45 (208)
374 1np6_A Molybdopterin-guanine d 91.1 0.13 4.4E-06 50.6 3.6 25 359-383 6-30 (174)
375 2onk_A Molybdate/tungstate ABC 91.0 0.1 3.5E-06 53.8 3.0 24 360-383 25-48 (240)
376 2ocp_A DGK, deoxyguanosine kin 91.0 0.12 4.2E-06 52.5 3.5 26 359-384 2-27 (241)
377 3tif_A Uncharacterized ABC tra 91.0 0.091 3.1E-06 54.0 2.5 30 355-384 25-56 (235)
378 2j9r_A Thymidine kinase; TK1, 90.9 0.28 9.5E-06 50.1 6.0 30 362-391 31-63 (214)
379 4i1u_A Dephospho-COA kinase; s 90.9 0.26 8.9E-06 50.1 5.7 33 361-396 11-43 (210)
380 3oiy_A Reverse gyrase helicase 90.7 0.2 7E-06 54.7 5.2 20 360-379 37-56 (414)
381 1p5z_B DCK, deoxycytidine kina 90.6 0.072 2.5E-06 55.1 1.4 30 359-388 24-54 (263)
382 3aez_A Pantothenate kinase; tr 90.6 0.13 4.6E-06 55.1 3.5 23 361-383 92-114 (312)
383 1q0u_A Bstdead; DEAD protein, 90.5 0.61 2.1E-05 46.3 8.1 18 360-377 42-59 (219)
384 4a2p_A RIG-I, retinoic acid in 90.4 0.79 2.7E-05 51.6 9.9 33 360-392 23-63 (556)
385 1rj9_A FTSY, signal recognitio 90.4 0.15 5.2E-06 54.5 3.8 25 359-383 102-126 (304)
386 3dkp_A Probable ATP-dependent 90.4 1.2 4.1E-05 44.9 10.3 17 360-376 67-83 (245)
387 1sgw_A Putative ABC transporte 90.4 0.11 3.8E-06 52.7 2.5 22 362-383 38-59 (214)
388 1wrb_A DJVLGB; RNA helicase, D 90.3 0.48 1.6E-05 48.2 7.2 18 360-377 61-78 (253)
389 3lxw_A GTPase IMAP family memb 90.2 0.39 1.3E-05 49.3 6.6 24 360-383 22-45 (247)
390 1g6h_A High-affinity branched- 90.2 0.11 3.9E-06 53.9 2.5 32 353-384 25-58 (257)
391 1b0u_A Histidine permease; ABC 90.2 0.11 3.9E-06 54.2 2.5 30 355-384 26-57 (262)
392 2gks_A Bifunctional SAT/APS ki 90.2 0.52 1.8E-05 54.5 8.2 39 359-397 372-413 (546)
393 2d2e_A SUFC protein; ABC-ATPas 90.2 0.14 4.6E-06 53.1 3.0 21 362-382 32-52 (250)
394 3tbk_A RIG-I helicase domain; 90.1 0.87 3E-05 51.0 9.9 33 360-392 20-60 (555)
395 2orv_A Thymidine kinase; TP4A 90.1 1.1 3.9E-05 46.1 9.8 66 362-430 22-102 (234)
396 1mv5_A LMRA, multidrug resista 90.1 0.12 4.1E-06 53.3 2.5 29 355-383 22-52 (243)
397 2zu0_C Probable ATP-dependent 90.1 0.14 4.8E-06 53.7 3.0 28 355-382 40-69 (267)
398 1ji0_A ABC transporter; ATP bi 90.1 0.12 4.2E-06 53.1 2.5 29 355-383 26-56 (240)
399 2fwr_A DNA repair protein RAD2 90.0 0.31 1E-05 54.4 5.9 33 361-393 110-142 (472)
400 2f9l_A RAB11B, member RAS onco 89.9 0.17 5.6E-06 49.5 3.3 23 361-383 7-29 (199)
401 1oix_A RAS-related protein RAB 89.9 0.16 5.5E-06 49.5 3.1 23 361-383 31-53 (191)
402 3def_A T7I23.11 protein; chlor 89.9 0.78 2.7E-05 47.3 8.5 24 360-383 37-60 (262)
403 2pze_A Cystic fibrosis transme 89.9 0.13 4.4E-06 52.6 2.5 22 362-383 37-58 (229)
404 2qm8_A GTPase/ATPase; G protei 89.8 0.49 1.7E-05 51.2 7.2 23 361-383 57-79 (337)
405 1xjc_A MOBB protein homolog; s 89.8 0.19 6.4E-06 49.4 3.4 32 360-391 5-39 (169)
406 2j0s_A ATP-dependent RNA helic 89.7 0.77 2.6E-05 49.7 8.8 55 322-378 36-93 (410)
407 1f2t_A RAD50 ABC-ATPase; DNA d 89.7 0.15 5.1E-06 48.5 2.7 22 362-383 26-47 (149)
408 4edh_A DTMP kinase, thymidylat 89.7 0.27 9.1E-06 49.8 4.7 31 361-391 8-41 (213)
409 3ly5_A ATP-dependent RNA helic 89.7 0.6 2E-05 48.2 7.5 18 360-377 92-109 (262)
410 2olj_A Amino acid ABC transpor 89.7 0.13 4.6E-06 53.8 2.5 30 355-384 44-75 (263)
411 3ber_A Probable ATP-dependent 89.6 1.2 4E-05 45.5 9.6 18 360-377 81-98 (249)
412 2qi9_C Vitamin B12 import ATP- 89.6 0.14 4.7E-06 53.2 2.5 29 356-384 21-51 (249)
413 3cr8_A Sulfate adenylyltranfer 89.5 0.13 4.5E-06 59.6 2.5 37 360-396 370-410 (552)
414 3sop_A Neuronal-specific septi 89.5 0.17 5.8E-06 53.1 3.1 23 361-383 4-26 (270)
415 2ihy_A ABC transporter, ATP-bi 89.4 0.14 4.9E-06 54.0 2.5 29 356-384 42-72 (279)
416 1fuu_A Yeast initiation factor 89.4 0.99 3.4E-05 48.2 9.2 55 320-376 18-75 (394)
417 3eiq_A Eukaryotic initiation f 89.4 0.77 2.6E-05 49.5 8.4 18 360-377 78-95 (414)
418 1vpl_A ABC transporter, ATP-bi 89.4 0.15 5E-06 53.3 2.5 29 355-383 35-65 (256)
419 2ghi_A Transport protein; mult 89.4 0.14 4.8E-06 53.4 2.3 30 355-384 40-71 (260)
420 2yz2_A Putative ABC transporte 89.3 0.15 5.1E-06 53.4 2.5 29 355-383 27-57 (266)
421 3lxx_A GTPase IMAP family memb 89.2 0.64 2.2E-05 46.9 7.1 24 360-383 30-53 (239)
422 1gm5_A RECG; helicase, replica 89.1 1.5 5E-05 52.9 11.3 35 358-392 388-425 (780)
423 1lw7_A Transcriptional regulat 89.1 0.16 5.5E-06 55.3 2.7 27 360-386 171-197 (365)
424 1g8f_A Sulfate adenylyltransfe 89.1 0.21 7.2E-06 57.4 3.7 26 360-385 396-421 (511)
425 2dyk_A GTP-binding protein; GT 89.1 0.22 7.5E-06 46.0 3.2 23 361-383 3-25 (161)
426 3dz8_A RAS-related protein RAB 89.0 1.2 3.9E-05 42.9 8.5 23 361-383 25-47 (191)
427 2pjz_A Hypothetical protein ST 88.8 0.17 5.8E-06 53.0 2.5 29 355-383 25-54 (263)
428 3v9p_A DTMP kinase, thymidylat 88.8 0.27 9.3E-06 50.4 4.0 31 361-391 27-64 (227)
429 1z2a_A RAS-related protein RAB 88.8 0.24 8.1E-06 46.1 3.3 23 360-382 6-28 (168)
430 2f7s_A C25KG, RAS-related prot 88.7 1.7 5.9E-05 42.5 9.7 22 361-382 27-48 (217)
431 3fmo_B ATP-dependent RNA helic 88.7 0.89 3.1E-05 48.0 8.1 18 359-376 131-148 (300)
432 3h1t_A Type I site-specific re 88.7 0.61 2.1E-05 53.8 7.3 23 360-382 199-221 (590)
433 2fh5_B SR-beta, signal recogni 88.7 1 3.4E-05 44.1 7.9 23 360-382 8-30 (214)
434 3ux8_A Excinuclease ABC, A sub 88.6 1 3.4E-05 53.2 9.3 54 408-476 210-265 (670)
435 2v6i_A RNA helicase; membrane, 88.6 0.66 2.3E-05 51.6 7.3 32 360-391 3-38 (431)
436 2p67_A LAO/AO transport system 88.6 0.7 2.4E-05 49.9 7.3 24 360-383 57-80 (341)
437 2ce2_X GTPase HRAS; signaling 88.5 0.25 8.4E-06 45.5 3.2 23 361-383 5-27 (166)
438 1nrj_B SR-beta, signal recogni 88.5 0.28 9.5E-06 48.3 3.7 25 359-383 12-36 (218)
439 2wji_A Ferrous iron transport 88.4 0.22 7.6E-06 47.0 2.9 22 361-382 5-26 (165)
440 1kao_A RAP2A; GTP-binding prot 88.3 0.26 9E-06 45.5 3.2 22 361-382 5-26 (167)
441 1svi_A GTP-binding protein YSX 88.3 0.23 7.9E-06 47.7 2.9 24 359-382 23-46 (195)
442 2zej_A Dardarin, leucine-rich 88.2 0.19 6.6E-06 48.4 2.3 22 361-382 4-25 (184)
443 2hup_A RAS-related protein RAB 88.2 1.4 4.6E-05 43.1 8.5 22 361-382 31-52 (201)
444 2bov_A RAla, RAS-related prote 88.2 1.2 4.1E-05 42.9 8.0 23 360-382 15-37 (206)
445 2gk6_A Regulator of nonsense t 88.1 0.23 7.8E-06 58.3 3.2 32 361-392 197-232 (624)
446 2f1r_A Molybdopterin-guanine d 88.0 0.14 4.8E-06 50.2 1.2 24 360-383 3-26 (171)
447 1u8z_A RAS-related protein RAL 88.0 0.28 9.7E-06 45.3 3.3 23 360-382 5-27 (168)
448 1ek0_A Protein (GTP-binding pr 88.0 0.28 9.7E-06 45.5 3.3 23 361-383 5-27 (170)
449 3tmk_A Thymidylate kinase; pho 87.9 0.4 1.4E-05 48.8 4.5 30 360-389 6-35 (216)
450 2nzj_A GTP-binding protein REM 87.9 0.25 8.6E-06 46.3 2.8 22 361-382 6-27 (175)
451 1z0j_A RAB-22, RAS-related pro 87.9 0.29 9.8E-06 45.6 3.2 23 361-383 8-30 (170)
452 2dpy_A FLII, flagellum-specifi 87.8 0.42 1.4E-05 53.7 5.1 25 362-386 160-184 (438)
453 3gd7_A Fusion complex of cysti 87.8 0.24 8.1E-06 55.0 2.9 27 356-382 42-70 (390)
454 2wjg_A FEOB, ferrous iron tran 87.7 0.28 9.4E-06 46.9 3.0 22 361-382 9-30 (188)
455 1g16_A RAS-related protein SEC 87.7 0.29 1E-05 45.5 3.2 22 361-382 5-26 (170)
456 1z08_A RAS-related protein RAB 87.6 0.31 1.1E-05 45.5 3.3 22 361-382 8-29 (170)
457 2erx_A GTP-binding protein DI- 87.6 0.29 9.8E-06 45.6 3.0 22 361-382 5-26 (172)
458 1wms_A RAB-9, RAB9, RAS-relate 87.5 0.31 1.1E-05 45.9 3.2 22 361-382 9-30 (177)
459 3fmp_B ATP-dependent RNA helic 87.5 1.5 5E-05 49.0 9.3 23 359-381 131-154 (479)
460 2bbs_A Cystic fibrosis transme 87.4 0.23 7.8E-06 52.8 2.4 32 352-383 55-88 (290)
461 4ddu_A Reverse gyrase; topoiso 87.4 1.1 3.9E-05 56.0 9.0 20 360-379 94-113 (1104)
462 1ky3_A GTP-binding protein YPT 87.4 0.32 1.1E-05 45.8 3.2 23 360-382 9-31 (182)
463 2www_A Methylmalonic aciduria 87.3 0.84 2.9E-05 49.5 7.0 23 361-383 76-98 (349)
464 1r2q_A RAS-related protein RAB 87.3 0.33 1.1E-05 45.1 3.3 22 361-382 8-29 (170)
465 1fzq_A ADP-ribosylation factor 87.3 0.84 2.9E-05 43.7 6.3 23 360-382 17-39 (181)
466 3fht_A ATP-dependent RNA helic 87.3 2.5 8.7E-05 45.3 10.7 53 322-376 24-81 (412)
467 3q85_A GTP-binding protein REM 87.2 0.29 1E-05 45.7 2.9 21 361-381 4-24 (169)
468 3fho_A ATP-dependent RNA helic 87.1 2 6.9E-05 48.7 10.3 19 359-377 158-176 (508)
469 3l9o_A ATP-dependent RNA helic 87.1 0.81 2.8E-05 57.3 7.5 33 360-392 200-235 (1108)
470 2hxs_A RAB-26, RAS-related pro 87.1 0.35 1.2E-05 45.6 3.3 22 361-382 8-29 (178)
471 1c1y_A RAS-related protein RAP 87.1 0.35 1.2E-05 44.9 3.3 22 361-382 5-26 (167)
472 3bc1_A RAS-related protein RAB 87.0 0.34 1.2E-05 46.1 3.3 23 360-382 12-34 (195)
473 1nij_A Hypothetical protein YJ 87.0 0.52 1.8E-05 50.4 5.0 22 362-383 7-28 (318)
474 2oca_A DAR protein, ATP-depend 86.8 2.7 9.3E-05 47.1 11.1 33 360-392 129-165 (510)
475 2gj8_A MNME, tRNA modification 86.8 0.32 1.1E-05 46.5 2.9 22 361-382 6-27 (172)
476 1r8s_A ADP-ribosylation factor 86.8 0.37 1.3E-05 44.7 3.3 22 361-382 2-23 (164)
477 2y8e_A RAB-protein 6, GH09086P 86.8 0.35 1.2E-05 45.3 3.2 22 361-382 16-37 (179)
478 2npi_A Protein CLP1; CLP1-PCF1 86.7 0.31 1E-05 55.2 3.2 23 361-383 140-162 (460)
479 1z0f_A RAB14, member RAS oncog 86.6 0.37 1.3E-05 45.2 3.3 24 360-383 16-39 (179)
480 3clv_A RAB5 protein, putative; 86.6 0.37 1.3E-05 46.0 3.2 23 360-382 8-30 (208)
481 2lkc_A Translation initiation 86.5 0.43 1.5E-05 44.9 3.6 24 359-382 8-31 (178)
482 4ag6_A VIRB4 ATPase, type IV s 86.4 0.62 2.1E-05 51.0 5.3 24 359-382 35-58 (392)
483 1upt_A ARL1, ADP-ribosylation 86.4 0.39 1.3E-05 44.8 3.3 23 360-382 8-30 (171)
484 2fn4_A P23, RAS-related protei 86.4 0.38 1.3E-05 45.2 3.1 22 361-382 11-32 (181)
485 1oyw_A RECQ helicase, ATP-depe 86.4 1.2 4.3E-05 50.8 8.0 21 360-380 41-61 (523)
486 3lv8_A DTMP kinase, thymidylat 86.3 0.4 1.4E-05 49.4 3.5 28 359-386 27-57 (236)
487 2a9k_A RAS-related protein RAL 86.3 0.39 1.3E-05 45.4 3.3 22 361-382 20-41 (187)
488 4dsu_A GTPase KRAS, isoform 2B 86.3 0.39 1.3E-05 45.6 3.2 23 361-383 6-28 (189)
489 3con_A GTPase NRAS; structural 86.2 0.4 1.4E-05 45.9 3.3 23 361-383 23-45 (190)
490 4a2q_A RIG-I, retinoic acid in 86.2 3.4 0.00012 49.6 12.0 33 360-392 264-304 (797)
491 2efe_B Small GTP-binding prote 86.2 0.41 1.4E-05 45.2 3.3 22 361-382 14-35 (181)
492 1m7b_A RND3/RHOE small GTP-bin 86.1 0.39 1.3E-05 46.0 3.2 23 360-382 8-30 (184)
493 2wsm_A Hydrogenase expression/ 86.1 0.39 1.3E-05 47.5 3.2 24 360-383 31-54 (221)
494 2vp4_A Deoxynucleoside kinase; 86.1 0.38 1.3E-05 48.6 3.2 26 362-388 23-48 (230)
495 1pui_A ENGB, probable GTP-bind 86.1 0.16 5.6E-06 49.6 0.4 23 361-383 28-50 (210)
496 2bme_A RAB4A, RAS-related prot 86.0 0.4 1.4E-05 45.6 3.2 23 360-382 11-33 (186)
497 2oil_A CATX-8, RAS-related pro 86.0 0.41 1.4E-05 46.0 3.3 22 361-382 27-48 (193)
498 3qks_A DNA double-strand break 85.9 0.34 1.2E-05 48.4 2.7 24 362-385 26-49 (203)
499 2obl_A ESCN; ATPase, hydrolase 85.9 0.56 1.9E-05 51.1 4.6 25 362-386 74-98 (347)
500 2cxx_A Probable GTP-binding pr 85.8 0.36 1.2E-05 45.9 2.7 22 361-382 3-24 (190)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.8e-88 Score=773.74 Aligned_cols=459 Identities=47% Similarity=0.829 Sum_probs=387.0
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF 399 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~ 399 (811)
.++++|+||+|++++|+++++++.++++|..|..+|.++|+|+||+||||||||+||+++|+++++||+.++++++.+.|
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccc
Q 047690 400 VGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILD 479 (811)
Q Consensus 400 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LD 479 (811)
+|.+..+++.+|..|+..+||||||||||.++.+++.+ ..+.+++..+++++||.+||++....+++||++||+++.||
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~-~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG-LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc-cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99999999999999999999999999999998776532 33556778899999999999998888999999999999999
Q ss_pred hhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCH
Q 047690 480 KALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTM 559 (811)
Q Consensus 480 pALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ 559 (811)
++++||||||+.|.|+.|+.++|.+||+.|+++..+..+.+ +..++..|+||+|+||.++|++|++.|.+++...|+.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~--l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~ 246 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN--LEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITM 246 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh--HHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecH
Confidence 99999999999999999999999999999999887765555 4779999999999999999999999999988899999
Q ss_pred HHHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhhHHHHhhhhcCCCeEEEEEeeCCCCcccceecccc-ccccccHHH
Q 047690 560 EHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPN-ENLLLTKEQ 638 (811)
Q Consensus 560 ed~~~Al~rvi~g~e~~~~~l~~~e~~~va~hEaGhAvv~~~l~~~~~~~kvsI~prg~~~lG~~~~~p~-e~~l~tk~~ 638 (811)
+||..|+++++.|.+++...+++.+++.++|||+|||+++|++++++++.+++|+|||..++||+++.|. +.+++||++
T Consensus 247 ~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~~~~~ 326 (476)
T 2ce7_A 247 KDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNE 326 (476)
T ss_dssp HHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CCSCBHHH
T ss_pred HHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCcccccccCHHH
Confidence 9999999999999887777889999999999999999999999999999999999999569999999997 578999999
Q ss_pred HHHHHHHhhhhHHHHHHHcCCccCCccchHHHHHHHHHHHHHHhCCCCCcccccccCCCcc------cccCCCCcHHHHH
Q 047690 639 LFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQREDT------FEMSKPYSSKTGA 712 (811)
Q Consensus 639 l~~~i~v~LgGRaAEel~fG~~stGA~~DL~~AT~lA~~mV~~~GMs~~~g~~~~~~~~~~------~~~~~~~s~~t~~ 712 (811)
|+++|+++|||||||+++||++||||+|||++||+||+.||++||||+++|+++|....+. +...++||++|++
T Consensus 327 l~~~i~~~l~Gr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 406 (476)
T 2ce7_A 327 LLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVAS 406 (476)
T ss_dssp HHHHHHHHTHHHHHHHHHHSSCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHHHH
T ss_pred HHHHHHHHHhHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccccccccccccccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999764332 2235789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHcCCCCCCccccchHHhhhccc
Q 047690 713 IIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGERPFKSSELTNYDRFKQGFE 783 (811)
Q Consensus 713 ~id~eV~~il~~ay~ra~~lL~~~r~~l~~lA~~LlekEtL~~~ei~~il~~~~~~~~~~~~~~~~~~~~~ 783 (811)
.||+||+++|++||++|++||++||+.|++||++|+|+|||+++||.+|+++ |+... ..+|+.+..+++
T Consensus 407 ~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~ 475 (476)
T 2ce7_A 407 KIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE-EFEKV-VEAAALEHHHHH 475 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcc-cccch-hHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999988 88654 688998887764
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=3.2e-86 Score=759.27 Aligned_cols=459 Identities=50% Similarity=0.825 Sum_probs=417.1
Q ss_pred CcccccccccccccccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 047690 302 RGIFNIGKAHVTKVDKNAKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAG 381 (811)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~ 381 (811)
+++|++|+++++.+... ++++|+||+|++++|+++++++.+++++..|..++.++|+|+||+||||||||+||++||+
T Consensus 9 ~~~~~~~~~~~~~~~~~--~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 9 DSAFSFTKSRARVLTEA--PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp ---------CCEEECSC--CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCCcccCcceeeccC--CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999887653 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEeechhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC
Q 047690 382 ESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG 461 (811)
Q Consensus 382 e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~ 461 (811)
+++.+|+.++++++.+++++....+++.+|+.++...|||+||||||.++..++.+ ..+.+++..++++++|.+|+++.
T Consensus 87 ~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~-~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 87 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp HTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSS-TTTSSHHHHHHHHHHHHHGGGCC
T ss_pred HhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccC-cCCCcHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999989999999999988899999999999998766432 23456788899999999999998
Q ss_pred CCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHH
Q 047690 462 TTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANV 541 (811)
Q Consensus 462 ~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~L 541 (811)
....++||++||+|+.||++++||||||++|.|++|+.++|.+||+.|++...+..+.+ +..+|..++||+|+||.++
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~--l~~lA~~t~G~~gadL~~l 243 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD--LALLAKRTPGFVGADLENL 243 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST--THHHHTTSCSCCHHHHHHH
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH--HHHHHHhcCCCCHHHHHHH
Confidence 88889999999999999999999999999999999999999999999998776665554 4789999999999999999
Q ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhhHHHHhhhhcCCCeEEEEEeeCCCCcc
Q 047690 542 CNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAAL 621 (811)
Q Consensus 542 vneAal~Aar~~~~~It~ed~~~Al~rvi~g~e~~~~~l~~~e~~~va~hEaGhAvv~~~l~~~~~~~kvsI~prg~~~l 621 (811)
|++|++.|.+++...|+++||++|+++++.|.+++...+++.+++.++|||+||||++|++++++++++++|+||+. ++
T Consensus 244 v~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~-~~ 322 (499)
T 2dhr_A 244 LNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGR-AL 322 (499)
T ss_dssp HHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSC-TT
T ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCCC-cC
Confidence 99999999988888999999999999999998887788999999999999999999999999999999999999996 99
Q ss_pred cceecccc--ccccccHHHHHHHHHHhhhhHHHHHHHcCCccCCccchHHHHHHHHHHHHHHhCCCCCcccccccCCCcc
Q 047690 622 GFAQYVPN--ENLLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQREDT 699 (811)
Q Consensus 622 G~~~~~p~--e~~l~tk~~l~~~i~v~LgGRaAEel~fG~~stGA~~DL~~AT~lA~~mV~~~GMs~~~g~~~~~~~~~~ 699 (811)
||++ |. +.+++||.+|+++|+++|||||||+++||++||||+|||++||+||+.||++||||+++|+++|...++.
T Consensus 323 g~~~--p~q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~ 400 (499)
T 2dhr_A 323 GFMM--PRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDT 400 (499)
T ss_dssp CSSH--HHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHSCSCCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCC
T ss_pred cccc--cchhhhhccCHHHHHHHHHHHhhhHhHHHhhhcccCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCcc
Confidence 9999 65 6789999999999999999999999999999999999999999999999999999999999999765432
Q ss_pred cc---cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHcCCCCC
Q 047690 700 FE---MSKPYSSKTGAIIDAEVREWVGKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGERPFK 768 (811)
Q Consensus 700 ~~---~~~~~s~~t~~~id~eV~~il~~ay~ra~~lL~~~r~~l~~lA~~LlekEtL~~~ei~~il~~~~~~ 768 (811)
+. ..++||++|+..||+||+++|++||++|++||++||+.|++||++|+|+|||+++||.+|++.++..
T Consensus 401 ~~~~~~~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~~~ 472 (499)
T 2dhr_A 401 YLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLPLE 472 (499)
T ss_dssp SSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTCCCC
T ss_pred ccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhccCCCC
Confidence 21 1578999999999999999999999999999999999999999999999999999999999876543
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-52 Score=463.43 Aligned_cols=251 Identities=41% Similarity=0.704 Sum_probs=237.1
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
..++++|+||+|++++|++|++.|.+ +++|+.|..+|.++|+|+|||||||||||+||+|+|+++++||+.++++++.+
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc
Confidence 45789999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
+|+|.+++.++.+|..|+.++||||||||||+++++|..+. .+.+.+..+++++||.+||++....+|+||+|||+|+.
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGS-GGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSS-SGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCC-CCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 99999999999999999999999999999999998876432 23456778899999999999999999999999999999
Q ss_pred cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCcc
Q 047690 478 LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQV 557 (811)
Q Consensus 478 LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~I 557 (811)
|||||+||||||+.|+|++||.++|.+||+.|+++.++..++++ +.+|..|+|||||||.++|++|++.|+++++..|
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl--~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~v 377 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL--RKVAEKMNGCSGADVKGVCTEAGMYALRERRIHV 377 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH--HHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBC
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH--HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999999999999999888776664 8999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcC
Q 047690 558 TMEHFEAAIDRVIGG 572 (811)
Q Consensus 558 t~ed~~~Al~rvi~g 572 (811)
+++||+.|+++++..
T Consensus 378 t~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 378 TQEDFELAVGKVMNK 392 (405)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCc
Confidence 999999999998754
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-51 Score=456.14 Aligned_cols=253 Identities=41% Similarity=0.690 Sum_probs=238.0
Q ss_pred ccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 318 NAKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 318 ~~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
...++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||+||+|+|++++++|+.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 457899999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 397 EMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 397 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
++|+|.+++.++.+|..|+.++||||||||||+++.+|..++ .+.+.+...++++||.+||++....+|+||+|||+|+
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd 332 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSN-SGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE 332 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSS-CSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCST
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCC-CCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChh
Confidence 999999999999999999999999999999999999886543 2345677889999999999999999999999999999
Q ss_pred ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCc
Q 047690 477 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQ 556 (811)
Q Consensus 477 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~ 556 (811)
.|||||+||||||+.|+|++||.++|.+||+.|+++..+..++++ +.+|..|+|||||||.++|++|++.|+++++..
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl--~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~ 410 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL--ETLVTTKDDLSGADIQAMCTEAGLLALRERRMQ 410 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH--HHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSC
T ss_pred hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH--HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999999999999999999999887766664 899999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHhcCc
Q 047690 557 VTMEHFEAAIDRVIGGL 573 (811)
Q Consensus 557 It~ed~~~Al~rvi~g~ 573 (811)
|+++||..|+++++.+.
T Consensus 411 It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 411 VTAEDFKQAKERVMKNK 427 (437)
T ss_dssp BCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhCCC
Confidence 99999999999987543
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-51 Score=458.17 Aligned_cols=255 Identities=40% Similarity=0.726 Sum_probs=239.7
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
..++|+|+||+|++++|++|++.|.+ +++|+.|..+|.++|+|+|||||||||||+||+|+|++++++|+.++++++.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 56889999999999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
+|+|.+++.++.+|..|+.++||||||||+|+++.+|..++ .+.......+++++|.+||++....+|+||+|||+|+.
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDG-AGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSS-CGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcC-CCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc
Confidence 99999999999999999999999999999999998886432 23456678899999999999999999999999999999
Q ss_pred cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCcc
Q 047690 478 LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQV 557 (811)
Q Consensus 478 LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~I 557 (811)
|||||+||||||+.|+|++|+.++|.+||+.|+++..+..++++ +.||+.|+|||||||.++|++|++.|+++++..|
T Consensus 361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl--~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~i 438 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW--ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVA 438 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH--HHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSB
T ss_pred CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH--HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999887776664 8899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCcccc
Q 047690 558 TMEHFEAAIDRVIGGLEKK 576 (811)
Q Consensus 558 t~ed~~~Al~rvi~g~e~~ 576 (811)
+++||..|+++++.|.++.
T Consensus 439 t~~Df~~Al~kV~~g~~k~ 457 (467)
T 4b4t_H 439 TEKDFLKAVDKVISGYKKF 457 (467)
T ss_dssp CHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhcCcccc
Confidence 9999999999999887654
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-50 Score=451.20 Aligned_cols=252 Identities=40% Similarity=0.661 Sum_probs=235.6
Q ss_pred ccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 318 NAKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 318 ~~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
...++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|+++++||+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 356899999999999999999998776 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 397 EMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 397 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
++|+|.+++.++.+|..|+.++||||||||||+++.+|..+. .+...+...++++||.+||++....+|+||+|||+|+
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~-~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVD 331 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGG-GGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCC-CCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCch
Confidence 999999999999999999999999999999999998886432 2345667889999999999999999999999999999
Q ss_pred ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCc
Q 047690 477 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQ 556 (811)
Q Consensus 477 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~ 556 (811)
.|||||+||||||+.|+|++||.++|.+||+.|+++..++.++++ ..+|+.|+|||||||.++|++|++.|.+++...
T Consensus 332 ~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl--~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~ 409 (434)
T 4b4t_M 332 VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW--QELARSTDEFNGAQLKAVTVEAGMIALRNGQSS 409 (434)
T ss_dssp CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH--HHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSS
T ss_pred hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH--HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999888776664 889999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHhcC
Q 047690 557 VTMEHFEAAIDRVIGG 572 (811)
Q Consensus 557 It~ed~~~Al~rvi~g 572 (811)
|+++||..|++++...
T Consensus 410 i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 410 VKHEDFVEGISEVQAR 425 (434)
T ss_dssp BCHHHHHHHHHSCSSS
T ss_pred cCHHHHHHHHHHHhCC
Confidence 9999999999876543
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-49 Score=449.14 Aligned_cols=251 Identities=39% Similarity=0.667 Sum_probs=236.1
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
..++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||+||+|+|+++++||+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 46789999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
+|+|.+++.++.+|..|+.++||||||||||+++.+|..++ ...+.+...++++||.+||++....+|+||+|||+|+.
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~ 332 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEG-TSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT 332 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSC-CSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCC-CCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh
Confidence 99999999999999999999999999999999998886443 23456678899999999999999999999999999999
Q ss_pred cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCcc
Q 047690 478 LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQV 557 (811)
Q Consensus 478 LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~I 557 (811)
|||||+||||||+.|+|++||.++|.+||+.|+++..+..+.++ ..+|..|+|||||||.++|++|++.|++++...|
T Consensus 333 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl--~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i 410 (437)
T 4b4t_L 333 LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF--EAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHI 410 (437)
T ss_dssp SCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH--HHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred hCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH--HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999887766654 8999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcC
Q 047690 558 TMEHFEAAIDRVIGG 572 (811)
Q Consensus 558 t~ed~~~Al~rvi~g 572 (811)
+++||..|++++...
T Consensus 411 ~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 411 NPDDLMKAVRKVAEV 425 (437)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998653
No 8
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=1.1e-50 Score=422.03 Aligned_cols=211 Identities=30% Similarity=0.512 Sum_probs=166.6
Q ss_pred hcCccccchhhhhhhhhhhhhhhhhhHHHHhhhhcCCCeEEEEEeeCCCCcccceecccc-ccccccHHHHHHHHHHhhh
Q 047690 570 IGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPN-ENLLLTKEQLFDMTCMTLG 648 (811)
Q Consensus 570 i~g~e~~~~~l~~~e~~~va~hEaGhAvv~~~l~~~~~~~kvsI~prg~~~lG~~~~~p~-e~~l~tk~~l~~~i~v~Lg 648 (811)
+.|+++++..+++.+++++||||||||||+|++++++||+||||+|||. ++|||++.|. +.+++||++|+++|||+||
T Consensus 1 ~~G~ekk~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~-alG~t~~~P~ed~~~~tk~~l~~~i~v~Lg 79 (238)
T 2di4_A 1 FQGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGM-ALGVTQQLPIEDKHIYDKKDLYNKILVLLG 79 (238)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC-----------------CCCCBHHHHHHHHHHHHH
T ss_pred CCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCC-cceEEEeCCcccccccCHHHHHHHHHHHHh
Confidence 4688888889999999999999999999999999999999999999996 9999999997 5789999999999999999
Q ss_pred hHHHHHHHc--CCccCCccchHHHHHHHHHHHHHHhCCCCCcccccccCCCccc----ccCCCCcHHHHHHHHHHHHHHH
Q 047690 649 GRAAEQVLL--GKISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQREDTF----EMSKPYSSKTGAIIDAEVREWV 722 (811)
Q Consensus 649 GRaAEel~f--G~~stGA~~DL~~AT~lA~~mV~~~GMs~~~g~~~~~~~~~~~----~~~~~~s~~t~~~id~eV~~il 722 (811)
|||||+++| |++||||+|||++||+||+.||++||||+++|+++|...++.| ...++||++|++.||.||++||
T Consensus 80 GRaAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~iD~Ev~~il 159 (238)
T 2di4_A 80 GRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRII 159 (238)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHHHHHHHHHHHHH
Confidence 999999999 7899999999999999999999999999999999997544322 2368999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHcCCCCCCccccchHHhhhc
Q 047690 723 GKAYVRTVQLIEEHKEHVAQIAELLLEKEVLHQDDLLRVLGERPFKSSELTNYDRFKQG 781 (811)
Q Consensus 723 ~~ay~ra~~lL~~~r~~l~~lA~~LlekEtL~~~ei~~il~~~~~~~~~~~~~~~~~~~ 781 (811)
++||++|++||++||+.|++||++||++|||+++||.+|++..++..++...-+.+...
T Consensus 160 ~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~~~~~~~~~~~~~~~~~ 218 (238)
T 2di4_A 160 TEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYGIELKDKCKKEELFDK 218 (238)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHTCCCCCCCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccCCCCchhHHHhHHHHhh
Confidence 99999999999999999999999999999999999999999887766555444455443
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-49 Score=441.88 Aligned_cols=251 Identities=41% Similarity=0.642 Sum_probs=235.1
Q ss_pred ccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 318 NAKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 318 ~~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
...++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|+++++||+.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 356889999999999999999999986 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 397 EMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 397 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
++|+|.++..++.+|..|+.++||||||||+|+++..|.... .+.+.+..+++++||.+||++....+|+||+|||+|+
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~-~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSC-SCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCC-CCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999998886432 3345677889999999999999999999999999999
Q ss_pred ccchhhcCCCCcceeeecc-CCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 047690 477 ILDKALLRPGRFDRQITID-KPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENS 555 (811)
Q Consensus 477 ~LDpALlRpGRFdr~I~v~-~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~ 555 (811)
.|||||+||||||+.|+|+ +|+.++|..||+.|+++..+..++++ +.+|..|+|||||||.++|++|++.|+++++.
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl--~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~ 400 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL--DSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRY 400 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH--HHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH--HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999996 89999999999999999887766664 89999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhc
Q 047690 556 QVTMEHFEAAIDRVIG 571 (811)
Q Consensus 556 ~It~ed~~~Al~rvi~ 571 (811)
.|+++||+.|+.+++.
T Consensus 401 ~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 401 VILQSDLEEAYATQVK 416 (428)
T ss_dssp SBCHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHhhC
Confidence 9999999999988753
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.9e-43 Score=423.06 Aligned_cols=246 Identities=42% Similarity=0.695 Sum_probs=227.2
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
.+.++|+||+|++++|++|++.+.+ |++|+.|..+|.++|+|||||||||||||+|||++|++++++|+.++++++.++
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 4679999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 399 FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
|+|.++++++.+|+.|+.++||||||||||+|+++|+.. .+....+++++||.+||++..+.+|+||++||+++.|
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~----~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC----CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC----CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 999999999999999999999999999999999887532 2345578999999999999988999999999999999
Q ss_pred chhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcC-----
Q 047690 479 DKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGE----- 553 (811)
Q Consensus 479 DpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~----- 553 (811)
|++|+||||||+.|+|+.||.++|.+||+.|+++..+..++++ ..+|..|+||+|+||.+||++|++.|.++.
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl--~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~ 431 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL--EQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH--HHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH--HHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999998887776664 889999999999999999999999987762
Q ss_pred ------------CCccCHHHHHHHHHHHhc
Q 047690 554 ------------NSQVTMEHFEAAIDRVIG 571 (811)
Q Consensus 554 ------------~~~It~ed~~~Al~rvi~ 571 (811)
...|+.+||..|+..+..
T Consensus 432 ~~~~~~~~e~~~~~~v~~~Df~~Al~~~~p 461 (806)
T 3cf2_A 432 LEDETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp GTCCCCSHHHHHHCEECTTHHHHHHSSSSC
T ss_pred ccccccchhhhccceeeHHHHHHHHHhCCC
Confidence 134788999999987643
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.6e-44 Score=429.25 Aligned_cols=249 Identities=39% Similarity=0.708 Sum_probs=192.5
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
..++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.||+.++++++++
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 35789999999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
+|+|.+++.++.+|..|++.+||||||||||+++.+|+.+. ...+....+++++||.+||++....+|+||+|||+|+.
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~-~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~ 628 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSS
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCC-CCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999998885321 12344567899999999999999999999999999999
Q ss_pred cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCC---
Q 047690 478 LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGEN--- 554 (811)
Q Consensus 478 LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~--- 554 (811)
||+|++||||||+.|+|++||.++|.+||+.|+++.++..++++ ..||+.|+||||+||.++|++|++.|.++.-
T Consensus 629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl--~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~ 706 (806)
T 3cf2_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL--EFLAKMTNGFSGADLTEICQRACKLAIRESIESE 706 (806)
T ss_dssp SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC------------------CHHHHHHHHHHHHHHHHHC--
T ss_pred CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCH--HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998887766654 8899999999999999999999999987521
Q ss_pred ----------------------CccCHHHHHHHHHHHh
Q 047690 555 ----------------------SQVTMEHFEAAIDRVI 570 (811)
Q Consensus 555 ----------------------~~It~ed~~~Al~rvi 570 (811)
..|+++||+.|+.++.
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ 744 (806)
T 3cf2_A 707 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 744 (806)
T ss_dssp ---------------------CCC----CCTTTC----
T ss_pred hhhhhhhccCccccccccccccCccCHHHHHHHHHhCC
Confidence 2477888888877653
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=3.9e-38 Score=329.72 Aligned_cols=251 Identities=61% Similarity=1.039 Sum_probs=225.4
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF 399 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~ 399 (811)
.+..+|+||+|++++++++.+++.++.+++.|..++...|+++||+||||||||++|+++|++++.|++.++++++.+.+
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 85 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccc
Q 047690 400 VGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILD 479 (811)
Q Consensus 400 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LD 479 (811)
.+.+...++.+|+.+....||++||||+|.++..+... ..+...+....+++++..++++....+++||++||+++.+|
T Consensus 86 ~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~-~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 86 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG-LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTT-SCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCC-cCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 99999999999999999899999999999998766432 23345566788999999999988888999999999999999
Q ss_pred hhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCH
Q 047690 480 KALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTM 559 (811)
Q Consensus 480 pALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ 559 (811)
++++|||||++.++++.|+.++|.+|++.++++..+..+.+ ...++..++||+++||.++|++|+..|.+++...|+.
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~--~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~ 242 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID--AAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSM 242 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccH
Confidence 99999999999999999999999999999998877665544 4779999999999999999999999999998899999
Q ss_pred HHHHHHHHHHhcCc
Q 047690 560 EHFEAAIDRVIGGL 573 (811)
Q Consensus 560 ed~~~Al~rvi~g~ 573 (811)
+||+.|++++..|+
T Consensus 243 ~~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 243 VEFEKAKDKIMMGL 256 (257)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999988775
No 13
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=6.7e-39 Score=334.11 Aligned_cols=261 Identities=57% Similarity=0.923 Sum_probs=209.1
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFV 400 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~v 400 (811)
++++|+||+|++++|+.|++++.++.+++.|..+|...|+++||+||||||||++|+++|++++.+++.++++++.+.+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccch
Q 047690 401 GVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDK 480 (811)
Q Consensus 401 G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDp 480 (811)
+.+...++.+|..+....|+||||||+|.+..++........+.+....+++++.++++.....+++||++||.++.+|+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 88889999999999999999999999999987664322112234556788999999999877789999999999999999
Q ss_pred hhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 047690 481 ALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTME 560 (811)
Q Consensus 481 ALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~e 560 (811)
+++|+|||++.++++.|+.++|.+|++.+++..++....+.....++..+.|++++||.++|++|+..|.+++...|+.+
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~ 240 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBC
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 99999999999999999999999999999998877666555557899999999999999999999999998888899999
Q ss_pred HHHHHHHHHhcCccccchhhh
Q 047690 561 HFEAAIDRVIGGLEKKNKVIS 581 (811)
Q Consensus 561 d~~~Al~rvi~g~e~~~~~l~ 581 (811)
||..|++++..+.+++.+.++
T Consensus 241 d~~~a~~~~~~~~~~~~~~~~ 261 (262)
T 2qz4_A 241 NFEYAVERVLAGTAKKSKILS 261 (262)
T ss_dssp CHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHhccChhhhhHhhc
Confidence 999999999888766655544
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.6e-38 Score=335.12 Aligned_cols=248 Identities=36% Similarity=0.620 Sum_probs=205.0
Q ss_pred CCCccccccccchHhHHHHHHHHH-HhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVH-FLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~-~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
.++++|+||+|++++|++|.+.+. .+.+++.|..++..+|+|++|+||||||||+|++++|++++.+++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 467999999999999999998654 5999999999999999999999999999999999999999999999999999888
Q ss_pred hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 399 FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
+.+..+..++.+|+.++...|||+|+||||.++..++... .......+++++.+|++......++++++||+|+.|
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~----~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE----TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc----chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 8888889999999999989999999999999876543211 112245789999999999888899999999999999
Q ss_pred chhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhcc-CCCCCchhhhHHHhhCC--CCcHHHHHHHHHHHHHHHHHcC--
Q 047690 479 DKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIK-LDHEPSYYSQRLAALTP--GFAGADIANVCNEAALIAARGE-- 553 (811)
Q Consensus 479 DpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~-l~~~~d~~l~~LA~~t~--GfSgaDL~~LvneAal~Aar~~-- 553 (811)
|++++||||||+.|++++|+.++|.+||+.++++.. .....+.++..+|..+. ||||+||.++|++|++.|.++.
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999986522 12222334588998754 9999999999999999988752
Q ss_pred ---------CCccCHHHHHHHHHHHhc
Q 047690 554 ---------NSQVTMEHFEAAIDRVIG 571 (811)
Q Consensus 554 ---------~~~It~ed~~~Al~rvi~ 571 (811)
...|+++||+.|+.++..
T Consensus 240 ~~~~~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 240 RQKSGNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp ----------CCBCHHHHHHHHTTCCC
T ss_pred hccccccccCCeecHHHHHHHHHHhcC
Confidence 336999999999987644
No 15
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=3.1e-37 Score=332.04 Aligned_cols=247 Identities=40% Similarity=0.707 Sum_probs=219.2
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
.+.++|+||+|++++++.|.+.+.. +++|+.|..++...++++||+||||||||++|+++|++++.+|+.++|+++.+.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 4678999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 399 FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
+.|..+..++.+|..|+...||||||||||.+...++.... ........++++||..|+++....+++||++||+++.|
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~-~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG-DGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTC-CSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcC-CcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 99999999999999999999999999999999987653211 11122346788999999998878899999999999999
Q ss_pred chhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcC-----
Q 047690 479 DKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGE----- 553 (811)
Q Consensus 479 DpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~----- 553 (811)
|++++|||||++.++++.|+.++|.+||+.+++...+..+.+ +..++..+.||+|+||.++|++|++.|.++.
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~--~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~ 245 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD--LEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 245 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999877654444 4789999999999999999999998886542
Q ss_pred --------------------CCccCHHHHHHHHHHH
Q 047690 554 --------------------NSQVTMEHFEAAIDRV 569 (811)
Q Consensus 554 --------------------~~~It~ed~~~Al~rv 569 (811)
...|+.+||..|+.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 281 (301)
T 3cf0_A 246 RRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFA 281 (301)
T ss_dssp --------------------CCCBCHHHHHHHHTTC
T ss_pred hhhhhcccccccccccccccCCccCHHHHHHHHHHc
Confidence 1358899999998754
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.9e-36 Score=319.15 Aligned_cols=251 Identities=45% Similarity=0.767 Sum_probs=229.6
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
..+.++|++|+|++++++.|.+.+.. +.+++.|..+|...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 45678999999999999999999876 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
.+.+.....++.+|..++...|+||||||+|.+..++... ..+...+....+.+++.+++++....+++||+|||.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDA-LTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSS-CCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccc-cCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 9999999999999999999999999999999998766432 223456677899999999999888889999999999999
Q ss_pred cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCcc
Q 047690 478 LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQV 557 (811)
Q Consensus 478 LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~I 557 (811)
+|++++|++||++.+.++.|+.++|.+||+.+++...+..+.+ +..++..+.|++++||.++|++|...|.+++...|
T Consensus 169 l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~--~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I 246 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN--LEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYV 246 (285)
T ss_dssp BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcC
Confidence 9999999999999999999999999999999998877665554 48899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcC
Q 047690 558 TMEHFEAAIDRVIGG 572 (811)
Q Consensus 558 t~ed~~~Al~rvi~g 572 (811)
+.+||..|++++...
T Consensus 247 ~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 247 TMDDFRKAVEKIMEK 261 (285)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999988643
No 17
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=322.81 Aligned_cols=225 Identities=37% Similarity=0.588 Sum_probs=201.4
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-CCCeEEeechhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-GVPFLSISGSDFME 397 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-gvpfi~vs~s~~~~ 397 (811)
.++++|+||+|++++|+.|++.+.+ +++|+.|.. +..+|+++||+||||||||++|+++|+++ +.+|+.++++++..
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 4679999999999999999998876 888888874 35678999999999999999999999999 89999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC-CCCcEEEEecCCCCc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG-TTAGVVVIAGTNRPD 476 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~-~~~~VIVIaaTN~pd 476 (811)
.+.|.++..++.+|..++...||||||||||.++.++.. .........+++++.+|+++. ...+++||++||+|+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE----NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSS----CCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccc----ccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 999999999999999999999999999999999877653 234456788999999999986 357899999999999
Q ss_pred ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 047690 477 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARG 552 (811)
Q Consensus 477 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~ 552 (811)
.||++++| ||++.+++++|+.++|.+||+.+++......+ +.++..+++.|.||+|+||.++|++|++.|.++
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT-EADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC-HHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999987665432 345689999999999999999999999888765
No 18
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=3.6e-35 Score=306.72 Aligned_cols=245 Identities=61% Similarity=0.996 Sum_probs=217.7
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
..+.++|+||+|+++++.++.+++..+.++..+..++..+|+|++|+||||||||+|+++++++++.+++.+++.++.+.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 399 FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
+.+.....++.+|+.+....|+++||||||.++..+..+ ......+....+++++.+|++......++++++||+|+.|
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~-~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC----------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcc-ccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 888778889999999988889999999999998765421 1234566778899999999998877789999999999999
Q ss_pred chhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccC
Q 047690 479 DKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVT 558 (811)
Q Consensus 479 DpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It 558 (811)
|++++|++||++.++++.|+.++|.+||+.+++...+..+.+ +..+|..++|++++||.++|++|+..|.+++...|+
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~--~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~ 245 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD--LALLAKRTPGFVGADLENLLNEAALLAAREGRRKIT 245 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 999999999999999999999999999999988776655554 478999999999999999999999999998888999
Q ss_pred HHHHHHHH
Q 047690 559 MEHFEAAI 566 (811)
Q Consensus 559 ~ed~~~Al 566 (811)
.+||++|+
T Consensus 246 ~~dl~~a~ 253 (254)
T 1ixz_A 246 MKDLEEAA 253 (254)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999885
No 19
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=8.4e-35 Score=308.71 Aligned_cols=260 Identities=58% Similarity=0.955 Sum_probs=221.8
Q ss_pred CcccccccccccccccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 047690 302 RGIFNIGKAHVTKVDKNAKNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAG 381 (811)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~ 381 (811)
+..+++.++....+.. .+.++|+||+|++++++++.+++..+.++..+..++..+|+|++|+||||||||+|++++++
T Consensus 18 ~~~~~~~~~~~~~~~~--~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 18 DSAFSFTKSRARVLTE--APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp --------CCCCCBCC--CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcccccccccccccC--CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH
Confidence 4556777666655543 47899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEeechhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC
Q 047690 382 ESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG 461 (811)
Q Consensus 382 e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~ 461 (811)
.++.+++.+++.++.+.+.+.....++.+|+.+....|+++||||||.++..+..+ ......+....+++++.+|++..
T Consensus 96 ~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~-~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 96 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp HTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC---------CHHHHHHHHHHHHHHTTCC
T ss_pred HcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccc-cCCcchHHHHHHHHHHHHHhCCC
Confidence 99999999999999888887777889999999988889999999999998655321 12235567788999999999987
Q ss_pred CCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHH
Q 047690 462 TTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANV 541 (811)
Q Consensus 462 ~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~L 541 (811)
....++++++||+|+.||++++|++||++.++++.|+.++|.+||+.+++...+..+.+ +..++..++|++++||.++
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~--~~~la~~~~G~~~~dl~~l 252 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD--LALLAKRTPGFVGADLENL 252 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCCHHHHHHH
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC--HHHHHHHcCCCCHHHHHHH
Confidence 77789999999999999999999999999999999999999999999998766655554 4789999999999999999
Q ss_pred HHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 542 CNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 542 vneAal~Aar~~~~~It~ed~~~Al 566 (811)
|++|+..|.+++...|+.+||++|+
T Consensus 253 ~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 253 LNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 9999999998888899999999986
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=2.2e-35 Score=320.37 Aligned_cols=226 Identities=39% Similarity=0.623 Sum_probs=198.4
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
..++++|+||+|++++|+.|.+.+.+ ++.|+.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 35679999999999999999998876 778877766 5677899999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC-CCCcEEEEecCCCCc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG-TTAGVVVIAGTNRPD 476 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~-~~~~VIVIaaTN~pd 476 (811)
.++|..+..++.+|..++...||||||||||.+..+++.+ .......++++++..|+++. ...+++||++||+++
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~ 165 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 165 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC----------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC----cchHHHHHHHHHHHHhccccccCCceEEEEecCChh
Confidence 9999999999999999999999999999999998766432 22334677899999999884 557899999999999
Q ss_pred ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 047690 477 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARG 552 (811)
Q Consensus 477 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~ 552 (811)
.||++++| ||++.+++++|+.++|.+||+.+++....... +..+..++..+.||+|+||.++|++|+..|.++
T Consensus 166 ~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~ 238 (322)
T 3eie_A 166 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLT-KEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238 (322)
T ss_dssp GSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC-HHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHH
T ss_pred hCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999988665433 334689999999999999999999999888775
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2.1e-34 Score=317.52 Aligned_cols=225 Identities=39% Similarity=0.626 Sum_probs=193.9
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
.+.++|+||+|++++++.|.+.+.. ++.|+.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 4578999999999999999998876 788888876 67788999999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCC-CCcEEEEecCCCCcc
Q 047690 399 FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGT-TAGVVVIAGTNRPDI 477 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~-~~~VIVIaaTN~pd~ 477 (811)
+.|..+..++.+|..++...||||||||||.+...++. +.......++++||..|+++.. ..+++||++||+++.
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~----~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ 199 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE----GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 199 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGG
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC----CcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCccc
Confidence 99999999999999999999999999999999876642 2344556788999999998754 568999999999999
Q ss_pred cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 047690 478 LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARG 552 (811)
Q Consensus 478 LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~ 552 (811)
||++++| ||++.+++++|+.++|.+||+.+++......+ +.++..|+..|.||+|+||.++|++|++.|.++
T Consensus 200 ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~-~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 200 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT-KEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp SCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999987664332 345689999999999999999999999998875
No 22
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=7.2e-37 Score=321.37 Aligned_cols=251 Identities=61% Similarity=1.007 Sum_probs=217.0
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF 399 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~ 399 (811)
.+.++|++|+|++++++.|.+++.++.+++.|..++.+.|+++||+||||||||++|+++|++++.|++.++++++.+.+
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCC-CcEEEEecCCCCccc
Q 047690 400 VGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTT-AGVVVIAGTNRPDIL 478 (811)
Q Consensus 400 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~-~~VIVIaaTN~pd~L 478 (811)
.+.+...++.+|..+....|+||||||+|.+...+..++....+......+++|+..++++... ..++||++||.++.|
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l 164 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEIL 164 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTS
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhc
Confidence 9988888999999999999999999999999876543222222333345678889899887543 459999999999999
Q ss_pred chhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccC
Q 047690 479 DKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVT 558 (811)
Q Consensus 479 DpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It 558 (811)
|++++|+|||+..++++.|+.++|.+||+.+++...+..+.+ +..++..+.|++|+||.++|++|+..|.+++...|+
T Consensus 165 d~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~--~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~ 242 (268)
T 2r62_A 165 DPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVN--LQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242 (268)
T ss_dssp CGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCC--TTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred CHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccC--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcC
Confidence 999999999999999999999999999999998776654444 477999999999999999999999999887788999
Q ss_pred HHHHHHHHHHHhcC
Q 047690 559 MEHFEAAIDRVIGG 572 (811)
Q Consensus 559 ~ed~~~Al~rvi~g 572 (811)
.+|+..|+.++...
T Consensus 243 ~~~~~~a~~~~~~~ 256 (268)
T 2r62_A 243 QQHLKEAVERGIAG 256 (268)
T ss_dssp HHHHHTSCTTCCCC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999998765443
No 23
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.3e-34 Score=329.90 Aligned_cols=264 Identities=41% Similarity=0.667 Sum_probs=224.8
Q ss_pred CCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF 399 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~ 399 (811)
..++|++|+|++++++.|.+.+.. +++|+.|..+|...|+++||+||||||||++|+++|++++.||+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 467899999999999999999987 8999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccc
Q 047690 400 VGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILD 479 (811)
Q Consensus 400 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LD 479 (811)
.|.....++.+|..|....||||||||||.+..++.. ...+....++++|+..|++.....+++||+|||+++.||
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~----~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld 354 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTS----CCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBC
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccc----ccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccC
Confidence 9999999999999999999999999999999876642 234555788999999999988888999999999999999
Q ss_pred hhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCC----
Q 047690 480 KALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENS---- 555 (811)
Q Consensus 480 pALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~---- 555 (811)
++++|+|||++.++++.|+.++|.+||+.+++...+..+.+ +..++..+.||+++||.+||++|++.|.++...
T Consensus 355 ~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~--l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~ 432 (489)
T 3hu3_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD--LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (489)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC--HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCT
T ss_pred HHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh--HHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999877665554 488999999999999999999999999887543
Q ss_pred -------------ccCHHHHHHHHHHHhcCccccchhhhhhhhhhhhhhhhh
Q 047690 556 -------------QVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESG 594 (811)
Q Consensus 556 -------------~It~ed~~~Al~rvi~g~e~~~~~l~~~e~~~va~hEaG 594 (811)
.|+++||..|+..+.....+ . ...+...|.|.++|
T Consensus 433 ~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~r---e-~~~e~p~v~W~dig 480 (489)
T 3hu3_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALR---E-TVVEVPQVTWEDIG 480 (489)
T ss_dssp TCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHH---G-GGC-----------
T ss_pred cccccchhhcccCcCCHHHHHHHHHhCCchhhh---c-ccccCCCCCHHHcC
Confidence 48999999999876432211 0 11244567777777
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=3.4e-33 Score=316.66 Aligned_cols=225 Identities=37% Similarity=0.592 Sum_probs=190.7
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-CCCeEEeechhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-GVPFLSISGSDFME 397 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-gvpfi~vs~s~~~~ 397 (811)
.+.++|+||+|++++++.|.+.+.. +++|+.|.. +..+++++||+||||||||+||+++|+++ +.+|+.++++++..
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 4679999999999999999998865 788887764 35678999999999999999999999999 89999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCC-CCcEEEEecCCCCc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGT-TAGVVVIAGTNRPD 476 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~-~~~VIVIaaTN~pd 476 (811)
.|+|..+..++.+|..++...||||||||||.++..+... .......++++||..|+++.. ..+++||++||+|+
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~ 282 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 282 (444)
T ss_dssp -----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC----CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGG
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc----cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcc
Confidence 9999999999999999999999999999999998766432 334456789999999999763 57899999999999
Q ss_pred ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 047690 477 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARG 552 (811)
Q Consensus 477 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~ 552 (811)
.||++++| ||++.+++++|+.++|..||+.++...+.... +.++..|+..|.||+|+||.++|++|++.|.++
T Consensus 283 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 283 VLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT-EADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp GSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECC-HHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred ccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999987654332 345689999999999999999999999988764
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.98 E-value=1.8e-31 Score=293.96 Aligned_cols=245 Identities=36% Similarity=0.561 Sum_probs=209.9
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
.+.++|+||+|++++++.|.+.+.. +..++.|...+ ..++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 3568999999999999999999886 78888777654 678999999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCC--CCcEEEEecCCCCc
Q 047690 399 FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGT--TAGVVVIAGTNRPD 476 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~--~~~VIVIaaTN~pd 476 (811)
+.|.....++.+|..+....|+||||||||.+...+.. +.+......++++|..+++... ..+++||++||+++
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD----GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC----------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC----CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 99988999999999999999999999999999876532 2344556788999999998653 46899999999999
Q ss_pred ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHc----
Q 047690 477 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARG---- 552 (811)
Q Consensus 477 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~---- 552 (811)
.||++++| ||+..++++.|+.++|.+|++.+++..+...+ +..+..++..+.||+++||.++|++|...+.++
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~-~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~ 309 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLS-EEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTA 309 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC-HHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999 99999999999999999999999987655433 334688999999999999999999999888874
Q ss_pred --------CCCccCHHHHHHHHHHHhcC
Q 047690 553 --------ENSQVTMEHFEAAIDRVIGG 572 (811)
Q Consensus 553 --------~~~~It~ed~~~Al~rvi~g 572 (811)
....|+.+||..|+..+...
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 310 DIATITPDQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp ---------CCCBCHHHHHHHHHHHGGG
T ss_pred hhccccccccCCcCHHHHHHHHHhcCCC
Confidence 23579999999999987543
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.98 E-value=6.6e-32 Score=287.73 Aligned_cols=242 Identities=38% Similarity=0.598 Sum_probs=206.0
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
.++++|++|+|++++++.|.+.+.. +.+|+.|..++ ..++++||+||||||||++|+++|++++.+|+.++|+++...
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 3578999999999999999998876 67787776654 457899999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCC---CcEEEEecCCCC
Q 047690 399 FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTT---AGVVVIAGTNRP 475 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~---~~VIVIaaTN~p 475 (811)
+.+.+...++.+|..+....|+||||||+|.+...+... .........++++..++++... .+++||++||++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS----EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC---------CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC----cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 999999999999999999999999999999998765422 1222345678888888887543 579999999999
Q ss_pred cccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcC--
Q 047690 476 DILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGE-- 553 (811)
Q Consensus 476 d~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~-- 553 (811)
+.+|+++++ ||+..++++.|+.++|..|++.+++..+...+. ..+..++..+.|++++||.++|++|+..+.++.
T Consensus 170 ~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~ 246 (297)
T 3b9p_A 170 QELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDT-EALRRLAKITDGYSGSDLTALAKDAALEPIRELNV 246 (297)
T ss_dssp GGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCH-HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-
T ss_pred hhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999 999999999999999999999999876654333 346889999999999999999999999988864
Q ss_pred ----------CCccCHHHHHHHHHHH
Q 047690 554 ----------NSQVTMEHFEAAIDRV 569 (811)
Q Consensus 554 ----------~~~It~ed~~~Al~rv 569 (811)
...|+.+||..|+.++
T Consensus 247 ~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 247 EQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp -------CCCCCCCCHHHHHHHTTSC
T ss_pred hhcccccccccCCcCHHHHHHHHHHc
Confidence 2579999999998654
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=9.4e-31 Score=291.03 Aligned_cols=242 Identities=36% Similarity=0.576 Sum_probs=199.9
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
...++|+||+|++++++.|.+.+.. +..++.|..++ ..++++||+||||||||++|+++|.+++.+|+.++|+++...
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc
Confidence 3568999999999999999998876 66777777665 457899999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCC--CCcEEEEecCCCCc
Q 047690 399 FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGT--TAGVVVIAGTNRPD 476 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~--~~~VIVIaaTN~pd 476 (811)
|.|..+..++.+|..++...|+||||||||.++..+.. +........++.|+..|+++.. ..+++||++||+++
T Consensus 188 ~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~----~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 263 (389)
T 3vfd_A 188 YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE----GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ 263 (389)
T ss_dssp ----CHHHHHHHHHHHHHSSSEEEEEETGGGGC------------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGG
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC----ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCch
Confidence 99999999999999999999999999999999776542 2233456788899999998754 46799999999999
Q ss_pred ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHc----
Q 047690 477 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARG---- 552 (811)
Q Consensus 477 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~---- 552 (811)
.||++++| ||+..++++.|+.++|.+||+.++...+.....+ .+..++..+.|+++++|.+||++|...+.++
T Consensus 264 ~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~-~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~ 340 (389)
T 3vfd_A 264 ELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAKDAALGPIRELKPE 340 (389)
T ss_dssp GCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHH-HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC
T ss_pred hcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999 9999999999999999999999998766554433 4688999999999999999999999988886
Q ss_pred --------CCCccCHHHHHHHHHHH
Q 047690 553 --------ENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 553 --------~~~~It~ed~~~Al~rv 569 (811)
....|+.+||..++.++
T Consensus 341 ~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 341 QVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp ---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred hhhccchhhcCCcCHHHHHHHHHHc
Confidence 34579999999999865
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=8.4e-34 Score=343.03 Aligned_cols=232 Identities=41% Similarity=0.733 Sum_probs=202.5
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 319 AKNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 319 ~~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
..+.++|+|++|++++|+.|.+.+.+ ++++..|..++...++++||+||||||||+||+++|++++.+|+.++++++..
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 34678999999999999999999886 78888999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 398 MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
.|+|..+..++.+|+.|+...||||||||||.++..++... .........++++||.+||++....+++||+|||+++.
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCC-SHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGG
T ss_pred hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCC-CCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCccc
Confidence 99999999999999999999999999999999987764321 11133567899999999999988889999999999999
Q ss_pred cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcC
Q 047690 478 LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGE 553 (811)
Q Consensus 478 LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~ 553 (811)
||++++|||||++.|++++|+.++|.+||+.++++..+..+.+. ..+++.+.|||++||.++|++|+..|.++.
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l--~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL--EFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCC--SCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCH--HHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988776655554 789999999999999999999999998764
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.96 E-value=3.6e-30 Score=276.44 Aligned_cols=226 Identities=17% Similarity=0.211 Sum_probs=158.9
Q ss_pred cCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCchhHHHHHHHHH----HhcCCeEEEEcCcch
Q 047690 354 LGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEA----RQCAPSIIFIDEIDA 429 (811)
Q Consensus 354 lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A----~~~aP~ILfIDEIDa 429 (811)
.+.+.|+++||+||||||||++|+++|++++.+|+.++++++.+.++|..+..++.+|..| +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4678899999999999999999999999999999999999999999999999999999999 577899999999999
Q ss_pred hhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC-----------CCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCC
Q 047690 430 IGRARGRGGFSGANDERESTLNQLLVEMDGFG-----------TTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPD 498 (811)
Q Consensus 430 L~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~-----------~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd 498 (811)
++.+++.. .........+.+.|+..||+.. ...+++||+|||+++.||++++|||||++.|+ .|+
T Consensus 111 ~~~~~~~~--~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~ 186 (293)
T 3t15_A 111 GAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 186 (293)
T ss_dssp ---------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCC
T ss_pred hcCCCCCC--ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcC
Confidence 98754321 1111123455677777777432 45679999999999999999999999999887 579
Q ss_pred HHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH---------H
Q 047690 499 IKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDR---------V 569 (811)
Q Consensus 499 ~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~r---------v 569 (811)
.++|.+|++.++....+ + ...++..+.||++++|..+.. +.+. +..+.+...+.. +
T Consensus 187 ~~~r~~Il~~~~~~~~~----~--~~~l~~~~~~~~~~~l~~~~~---l~~~------~~~~~i~~~~~~~g~~~~~~~~ 251 (293)
T 3t15_A 187 REDRIGVCTGIFRTDNV----P--AEDVVKIVDNFPGQSIDFFGA---LRAR------VYDDEVRKWVSGTGIEKIGDKL 251 (293)
T ss_dssp HHHHHHHHHHHHGGGCC----C--HHHHHHHHHHSCSCCHHHHHH---HHHH------HHHHHHHHHHHHTCSTTCHHHH
T ss_pred HHHHHHHHHHhccCCCC----C--HHHHHHHhCCCCcccHHHHHH---HHHH------HHHHHHHHHHHHhCHHHHHHHH
Confidence 99999999998875432 2 377899999999998864311 0000 111112222211 1
Q ss_pred hcCccccchhhhhhhhhhhhhhhhhhHHHH
Q 047690 570 IGGLEKKNKVISKLERRTVAYHESGHAVAG 599 (811)
Q Consensus 570 i~g~e~~~~~l~~~e~~~va~hEaGhAvv~ 599 (811)
+.+. .....+.+.+....++||+||++++
T Consensus 252 ~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~ 280 (293)
T 3t15_A 252 LNSF-DGPPTFEQPKMTIEKLLEYGNMLVQ 280 (293)
T ss_dssp TSCS-SCSCCCCCCCCCHHHHHHHHHHHHH
T ss_pred HcCC-CCCCCCCCccccHHHHHHHHHHHHH
Confidence 2221 1123455556778899999999986
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=6.8e-28 Score=291.48 Aligned_cols=244 Identities=43% Similarity=0.703 Sum_probs=218.9
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
...++|+||+|++++++.|.+.+.. +.+|+.|..++...+.++||+||||||||+||+++|++++.+++.++|.++.+.
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3579999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 399 FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
+.+..+.+++.+|+.+....|+|+||||||.+..+++. .........+++|+..|+++.....++||++||+++.+
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~----~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC----CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc----ccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 99999999999999999999999999999999876642 23445567889999999999888899999999999999
Q ss_pred chhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCC----
Q 047690 479 DKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGEN---- 554 (811)
Q Consensus 479 DpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~---- 554 (811)
|+++.++|||++.+.++.|+.++|.+||+.++++..+..+.+. ..++..+.||+++|+..+|++|+..+.++..
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l--~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~ 431 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL--EQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCT--HHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchh--HHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999999999999999999988777665554 7899999999999999999999988876543
Q ss_pred -------------CccCHHHHHHHHHHH
Q 047690 555 -------------SQVTMEHFEAAIDRV 569 (811)
Q Consensus 555 -------------~~It~ed~~~Al~rv 569 (811)
..++.+|+..++...
T Consensus 432 ~~~~~~~~~~~~~~~v~~~d~~~al~~~ 459 (806)
T 1ypw_A 432 LEDETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp CHHHHCCHHHHTTCCCCTTHHHHHHHHS
T ss_pred hhhhccchhhhhhhhhhhhhhhcccccc
Confidence 236677788777654
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=1.2e-26 Score=263.55 Aligned_cols=206 Identities=21% Similarity=0.270 Sum_probs=145.9
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcC--CCeEEeechhhhh
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESG--VPFLSISGSDFME 397 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~g--vpfi~vs~s~~~~ 397 (811)
.+...|++|+|++++++.+.+++..++. +...|+++||+||||||||++|+++|++++ ++|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3456799999999999999999876543 445678999999999999999999999998 9999999999999
Q ss_pred hhhcCchhHHHHHHHHH---HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHH---------------HHHHHHHHhhh-
Q 047690 398 MFVGVGPSRVRNLFQEA---RQCAPSIIFIDEIDAIGRARGRGGFSGANDERE---------------STLNQLLVEMD- 458 (811)
Q Consensus 398 ~~vG~~~~~vr~lF~~A---~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~---------------~tLnqLL~emD- 458 (811)
.++|.++. ++.+|..| +...||||||||||+++.++.....++...... ...++++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99998887 99999999 788899999999999998875432211111111 11233555554
Q ss_pred -cCCCCCcEEEEecCCCCcccchhhcCCCCcce--eeeccCC--CHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCC
Q 047690 459 -GFGTTAGVVVIAGTNRPDILDKALLRPGRFDR--QITIDKP--DIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGF 533 (811)
Q Consensus 459 -g~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr--~I~v~~P--d~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~Gf 533 (811)
+......++|+++||+++.+|++++||||||+ .+.++.| +.++|.+|++.+... +++.++..|.|
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~---------dl~~~a~~t~g- 252 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH---------DLDVANARPQG- 252 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHH---------HHHHTC------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHH---------HHHHHHHhCCC-
Confidence 33344456667999999999999999999999 5677777 457788887765532 35789999999
Q ss_pred cHHHHHHHHHH
Q 047690 534 AGADIANVCNE 544 (811)
Q Consensus 534 SgaDL~~Lvne 544 (811)
|+||.++|+.
T Consensus 253 -gadl~~l~~~ 262 (456)
T 2c9o_A 253 -GQDILSMMGQ 262 (456)
T ss_dssp -----------
T ss_pred -hhHHHHHHhh
Confidence 9999999975
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.89 E-value=8.7e-23 Score=217.97 Aligned_cols=226 Identities=20% Similarity=0.250 Sum_probs=172.9
Q ss_pred ccc-ccccchHhHHHHHHHHHHhcCchhhhhcCCCC---CCcEEEEcCCCCCHHHHHHHHHHhc-------CCCeEEeec
Q 047690 324 YFR-DVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKI---PKGALLVGPPGTGKTLLAKATAGES-------GVPFLSISG 392 (811)
Q Consensus 324 ~f~-dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~---pkGvLL~GPPGTGKT~LAkAlA~e~-------gvpfi~vs~ 392 (811)
.++ +|+|++++|+.|.+++..+..++.+...|... +.++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 28 ~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 28 ELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 455 79999999999999999866677766666554 3469999999999999999999987 449999999
Q ss_pred hhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecC
Q 047690 393 SDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGT 472 (811)
Q Consensus 393 s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaT 472 (811)
+++...+.|.....++.+|..+ .++||||||+|.+...+.. +......++.|+..|+. ...+++||++|
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~------~~~~~~~~~~Ll~~l~~--~~~~~~~i~~~ 176 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE------RDYGQEAIEILLQVMEN--NRDDLVVILAG 176 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---------CCTHHHHHHHHHHHHH--CTTTCEEEEEE
T ss_pred HHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc------ccccHHHHHHHHHHHhc--CCCCEEEEEeC
Confidence 9999999999888899999887 4689999999999754321 11224567777777775 34578888888
Q ss_pred CCCc-----ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhh-------CCCCcHHHHHH
Q 047690 473 NRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAAL-------TPGFAGADIAN 540 (811)
Q Consensus 473 N~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~-------t~GfSgaDL~~ 540 (811)
|.++ .++|+|++ ||+..++|+.|+.+++.+|++.++...+...+.+. +..++.. ....+++++.+
T Consensus 177 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~-~~~l~~~~~~~~~~~~~gn~r~l~~ 253 (309)
T 3syl_A 177 YADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEA-ETALRAYIGLRRNQPHFANARSIRN 253 (309)
T ss_dssp CHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHH-HHHHHHHHHHHTTSSSCCHHHHHHH
T ss_pred ChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHhccCCCCCcHHHHHH
Confidence 8654 35799999 99999999999999999999999988765544432 3445554 22345899999
Q ss_pred HHHHHHHHHHHc----CCCccCHHHHH
Q 047690 541 VCNEAALIAARG----ENSQVTMEHFE 563 (811)
Q Consensus 541 LvneAal~Aar~----~~~~It~ed~~ 563 (811)
+++.|...+..+ ....++.+++.
T Consensus 254 ~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 254 ALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 999988765543 33556666554
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.88 E-value=2.5e-22 Score=219.58 Aligned_cols=255 Identities=18% Similarity=0.275 Sum_probs=171.9
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcC--CCeEEeechhhhhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESG--VPFLSISGSDFMEM 398 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~g--vpfi~vs~s~~~~~ 398 (811)
+..+|++++|++++++.+..+...+... ...++++||+||||||||++|+++|++++ .|++.++|..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~~-------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIREG-------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHTT-------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHcC-------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 4556999999999999988887766542 23458999999999999999999999986 48999998764332
Q ss_pred hh-------------------------------------------------cCchhHHHHHHHHHHhc---------CCe
Q 047690 399 FV-------------------------------------------------GVGPSRVRNLFQEARQC---------APS 420 (811)
Q Consensus 399 ~v-------------------------------------------------G~~~~~vr~lF~~A~~~---------aP~ 420 (811)
+. +.....++..|..+... .|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 21 12245566666655431 278
Q ss_pred EEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecC-----------CCCcccchhhcCCCCcc
Q 047690 421 IIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGT-----------NRPDILDKALLRPGRFD 489 (811)
Q Consensus 421 ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaT-----------N~pd~LDpALlRpGRFd 489 (811)
||||||+|.+. ...++.|+..++.. ...++++++. |.+..++++|++ ||.
T Consensus 192 vl~IDEi~~l~---------------~~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 192 VLFIDEVHMLD---------------IESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp EEEEESGGGSB---------------HHHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred eEEEhhccccC---------------hHHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 99999999982 23455666666543 2245544443 357789999999 997
Q ss_pred eeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 047690 490 RQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 490 r~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rv 569 (811)
. +.+++|+.+++.+|++.++...+...+.+ .++.++..+.+.+++++.++|+.|+..|..++...|+.+|+.+|++.+
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~-~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSED-AYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHH-HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 5 89999999999999999998766554443 357888888866899999999999999999899999999999999864
Q ss_pred hcCccccchhhhhhhhhhhhhhhhhhHHHHhhhhcC
Q 047690 570 IGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHA 605 (811)
Q Consensus 570 i~g~e~~~~~l~~~e~~~va~hEaGhAvv~~~l~~~ 605 (811)
+.. ......+.+.+ +...++|.++--...-|+|.
T Consensus 331 ~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 364 (368)
T 3uk6_A 331 LDE-SRSTQYMKEYQ-DAFLFNELKGETMDTSLEHH 364 (368)
T ss_dssp BCH-HHHHHHHC------------------------
T ss_pred cCH-HHHHHHHHHhh-hhhhhhcCCccccccchhhh
Confidence 322 12222333333 34558888887766666653
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.86 E-value=2.2e-20 Score=202.38 Aligned_cols=214 Identities=18% Similarity=0.227 Sum_probs=167.5
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhc
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVG 401 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG 401 (811)
+.+|++++|.+++++.+...+...+. ....+.++||+||||||||++|+++|++++.+|+.++|+.+.
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~----- 92 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE----- 92 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-----
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-----
Confidence 34899999999999999998875432 123467899999999999999999999999999999997752
Q ss_pred CchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC----------------CCCc
Q 047690 402 VGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG----------------TTAG 465 (811)
Q Consensus 402 ~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~----------------~~~~ 465 (811)
....+..++.. ...+++|||||||.+. . ...+.|+..|+... ...+
T Consensus 93 -~~~~~~~~~~~--~~~~~vl~lDEi~~l~------------~---~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 93 -KSGDLAAILTN--LSEGDILFIDEIHRLS------------P---AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp -SHHHHHHHHHT--CCTTCEEEEETGGGCC------------H---HHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred -chhHHHHHHHh--ccCCCEEEEechhhcC------------H---HHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 23344444432 2457899999999983 2 23344444444321 0114
Q ss_pred EEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHH
Q 047690 466 VVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEA 545 (811)
Q Consensus 466 VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneA 545 (811)
+++|++||+...++++|++ ||+..+.++.|+.+++..+++.++...+...+.+ .++.++..++| +.+++.++++.+
T Consensus 155 ~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~l~~~l~~~ 230 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEK-AALEIAKRSRS-TPRIALRLLKRV 230 (338)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHH-HHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHCc-CHHHHHHHHHHH
Confidence 8999999999999999999 9999999999999999999999998766544433 35677886665 678999999999
Q ss_pred HHHHHHcCCCccCHHHHHHHHHHH
Q 047690 546 ALIAARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 546 al~Aar~~~~~It~ed~~~Al~rv 569 (811)
...+...+...|+.+++..++...
T Consensus 231 ~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 231 RDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHhhcCCccCHHHHHHHHHHh
Confidence 888888788889999999998764
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.83 E-value=5.5e-20 Score=195.32 Aligned_cols=237 Identities=23% Similarity=0.322 Sum_probs=164.2
Q ss_pred cccccchHhHHHHHHHHHH-hcCchhhhhc-CCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh-hhhcC
Q 047690 326 RDVAGCDEAKQEIMEFVHF-LKNPRKYEDL-GAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME-MFVGV 402 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~-Lk~p~~~~~l-g~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~-~~vG~ 402 (811)
++|+|++++++.+...+.. +..+.....+ ....|.++||+||||||||++|+++|+.++.+++.++|+++.+ .|++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 3599999999999987764 2222111111 1245789999999999999999999999999999999999876 45554
Q ss_pred c-hhHHHHHHHHH-----HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC--------CCCcEEE
Q 047690 403 G-PSRVRNLFQEA-----RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG--------TTAGVVV 468 (811)
Q Consensus 403 ~-~~~vr~lF~~A-----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~--------~~~~VIV 468 (811)
. ...++.++..+ ....++||||||+|.+...... .+.+.....+.+.|+..|++.. ...++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~---~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~ 171 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY---SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILF 171 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC---CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc---cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEE
Confidence 3 34567766533 1123689999999999654431 1223333445677777777631 2346788
Q ss_pred Eec----CCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHH----HH-------hhccC--CCCCchhhhHHHhhC-
Q 047690 469 IAG----TNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQV----YL-------KKIKL--DHEPSYYSQRLAALT- 530 (811)
Q Consensus 469 Iaa----TN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~----~l-------~~~~l--~~~~d~~l~~LA~~t- 530 (811)
|++ ++.+..+++++++ ||+..++|+.|+.+++.+|++. ++ ...+. ..+ +..++.++..+
T Consensus 172 i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~l~~~~~ 248 (310)
T 1ofh_A 172 IASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFT-TDAVKKIAEAAF 248 (310)
T ss_dssp EEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEEC-HHHHHHHHHHHH
T ss_pred EEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccC-HHHHHHHHHHhh
Confidence 888 5678899999998 9998899999999999999983 21 11221 112 22345666655
Q ss_pred ------CCCcHHHHHHHHHHHHHHHHHc-----CCC-ccCHHHHHHHHHH
Q 047690 531 ------PGFAGADIANVCNEAALIAARG-----ENS-QVTMEHFEAAIDR 568 (811)
Q Consensus 531 ------~GfSgaDL~~LvneAal~Aar~-----~~~-~It~ed~~~Al~r 568 (811)
.+...+++.++|+.+...++.+ +.. .|+.+|+..++..
T Consensus 249 ~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 249 RVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred hhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 2567899999999876443321 111 4999999998854
No 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.82 E-value=1e-19 Score=195.22 Aligned_cols=218 Identities=21% Similarity=0.269 Sum_probs=163.6
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhc
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVG 401 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG 401 (811)
+.+|++++|.+++++.+.+.+...... ...+.++||+||||||||++|+++|++++.+++.++|+.+..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~---- 76 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK---- 76 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS----
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC----
Confidence 348999999999999999888754321 234678999999999999999999999999999999877522
Q ss_pred CchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh-----cCC--------CCCcEEE
Q 047690 402 VGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD-----GFG--------TTAGVVV 468 (811)
Q Consensus 402 ~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD-----g~~--------~~~~VIV 468 (811)
...+...|..+ ...+++|||||||.+. ......+..++.+.. +.. ...++++
T Consensus 77 --~~~l~~~l~~~-~~~~~~l~lDEi~~l~------------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 77 --PGDLAAILANS-LEEGDILFIDEIHRLS------------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp --HHHHHHHHTTT-CCTTCEEEETTTTSCC------------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred --hHHHHHHHHHh-ccCCCEEEEECCcccc------------cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 22233333221 1457899999999883 222333334443321 000 1135789
Q ss_pred EecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHH
Q 047690 469 IAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALI 548 (811)
Q Consensus 469 IaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~ 548 (811)
|++||.++.++++|.+ ||+..+.++.|+.+++..+++.++...+...+.+ .++.++..++| +++++.++++.+...
T Consensus 142 i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 142 IGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEE-AALEIGRRSRG-TMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHH-HHHHHHHHSCS-CHHHHHHHHHHHTTT
T ss_pred EEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 9999999999999998 9988999999999999999999998766554443 35778888866 578999999988777
Q ss_pred HHHcCCCccCHHHHHHHHHHH
Q 047690 549 AARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 549 Aar~~~~~It~ed~~~Al~rv 569 (811)
+...+...|+.+++..++...
T Consensus 218 a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHh
Confidence 766667789999999888654
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.81 E-value=1.8e-19 Score=189.88 Aligned_cols=219 Identities=20% Similarity=0.284 Sum_probs=151.0
Q ss_pred cccccccchHhHHHHHHH----HHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhh
Q 047690 324 YFRDVAGCDEAKQEIMEF----VHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF 399 (811)
Q Consensus 324 ~f~dV~G~eeak~eL~e~----v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~ 399 (811)
....++|.+++.+.+.+. +..++ ..+...+.++||+||||||||++|+++|.+++.||+.+++++. +
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~~~l~------~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~ 101 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLVQQTK------NSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---M 101 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHHHHHH------HCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---C
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHh------ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---h
Confidence 345788998887777763 33332 2245667899999999999999999999999999999998762 3
Q ss_pred hcCch----hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC-CCCcEEEEecCCC
Q 047690 400 VGVGP----SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG-TTAGVVVIAGTNR 474 (811)
Q Consensus 400 vG~~~----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~-~~~~VIVIaaTN~ 474 (811)
.|... ..++.+|..+....++||||||||.++..+..+ .......++.|+..+++.. ....++||++||.
T Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~ 176 (272)
T 1d2n_A 102 IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSR 176 (272)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESC
T ss_pred cCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCC
Confidence 34332 567889999888889999999999997654321 1122345556666666654 3457889999999
Q ss_pred Ccccch-hhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCC----cHHHHHHHHHHHHHHH
Q 047690 475 PDILDK-ALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGF----AGADIANVCNEAALIA 549 (811)
Q Consensus 475 pd~LDp-ALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~Gf----SgaDL~~LvneAal~A 549 (811)
++.+++ .+.+ ||+..|.++.+ .+|.+|.+.+.+...+ .+..+..++..+.|+ ..+++.++++.|..
T Consensus 177 ~~~l~~~~l~~--rf~~~i~~p~l--~~r~~i~~i~~~~~~~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-- 247 (272)
T 1d2n_A 177 KDVLQEMEMLN--AFSTTIHVPNI--ATGEQLLEALELLGNF---KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-- 247 (272)
T ss_dssp HHHHHHTTCTT--TSSEEEECCCE--EEHHHHHHHHHHHTCS---CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT--
T ss_pred hhhcchhhhhc--ccceEEcCCCc--cHHHHHHHHHHhcCCC---CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh--
Confidence 999998 5555 99888877544 4445555554443332 233457888888887 46677777665532
Q ss_pred HHcCCCccCHHHHHHHHHH
Q 047690 550 ARGENSQVTMEHFEAAIDR 568 (811)
Q Consensus 550 ar~~~~~It~ed~~~Al~r 568 (811)
.......+++..+++.
T Consensus 248 ---~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 248 ---MDPEYRVRKFLALLRE 263 (272)
T ss_dssp ---SCGGGHHHHHHHHHHH
T ss_pred ---hchHHHHHHHHHHHHH
Confidence 2234555666666643
No 38
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.80 E-value=1.5e-20 Score=212.33 Aligned_cols=170 Identities=23% Similarity=0.276 Sum_probs=82.4
Q ss_pred cccccchHhHHHHHHHHHH-hcCchhhhhcCCC-CCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh-hhhcC
Q 047690 326 RDVAGCDEAKQEIMEFVHF-LKNPRKYEDLGAK-IPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME-MFVGV 402 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~-Lk~p~~~~~lg~~-~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~-~~vG~ 402 (811)
++|+|++++|+.|...+.. ++.+..+..+... .|+++||+||||||||++|+++|++++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 3799999999999887754 4444444444433 5689999999999999999999999999999999999988 49995
Q ss_pred -chhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEec-CCCCcccch
Q 047690 403 -GPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAG-TNRPDILDK 480 (811)
Q Consensus 403 -~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaa-TN~pd~LDp 480 (811)
.+..++.+|..|... +++||+|.+.... ......+++++||.+||++.....+ +++ ||+++.||+
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~-------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~ 161 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA-------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRK 161 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc-------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHH
Confidence 788999999999874 4589988874321 2233468999999999999766554 455 999999999
Q ss_pred hhcCCCCcceeeeccCCCHH-HHHHHHHH
Q 047690 481 ALLRPGRFDRQITIDKPDIK-GRDQIFQV 508 (811)
Q Consensus 481 ALlRpGRFdr~I~v~~Pd~~-eR~eIL~~ 508 (811)
+|+||||||+.|+|++|+.. .|.+|+..
T Consensus 162 aL~rggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 162 KLREGQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp -----------------------------
T ss_pred HHHcCCCcceEEEEcCCCCccchhhhhcC
Confidence 99999999999999999987 78888643
No 39
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.80 E-value=2.4e-20 Score=216.51 Aligned_cols=225 Identities=24% Similarity=0.296 Sum_probs=150.5
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCC-CCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh---
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAK-IPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME--- 397 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~-~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~--- 397 (811)
..-.+|++|++++++.+.+.+..-. +... .+..+||+||||||||+||+++|+.++.++..++++.+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~-------~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQK-------LTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHH-------HSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHH-------hcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 4456789999999999988765311 1111 3457999999999999999999999999999999877543
Q ss_pred ------hhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCC---------
Q 047690 398 ------MFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGT--------- 462 (811)
Q Consensus 398 ------~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~--------- 462 (811)
.|+|.....+...|..+....| ||||||||.+...+. ....+.||..||....
T Consensus 150 ~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~-----------~~~~~~LL~~ld~~~~~~~~~~~~~ 217 (543)
T 3m6a_A 150 IRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR-----------GDPSSAMLEVLDPEQNSSFSDHYIE 217 (543)
T ss_dssp --------------CHHHHHHTTCSSSE-EEEEEESSSCC--------------------CCGGGTCTTTTTBCCCSSSC
T ss_pred hhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc-----------cCHHHHHHHHHhhhhcceeecccCC
Confidence 5677777788888888876666 999999999965432 1244566766664321
Q ss_pred ----CCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhh-----ccCCC-CC---chhhhHHHh-
Q 047690 463 ----TAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKK-----IKLDH-EP---SYYSQRLAA- 528 (811)
Q Consensus 463 ----~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~-----~~l~~-~~---d~~l~~LA~- 528 (811)
..+++||+|||+++.++++|++ ||+ .|.++.|+.+++.+|++.|+.. .++.. .. +..+..++.
T Consensus 218 ~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~ 294 (543)
T 3m6a_A 218 ETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRY 294 (543)
T ss_dssp CCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHH
T ss_pred eeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHh
Confidence 1568999999999999999999 995 7999999999999999998732 22211 11 222344444
Q ss_pred hCCCCcHHHH----HHHHHHHHHHHHHc--CCCccCHHHHHHHHHH
Q 047690 529 LTPGFAGADI----ANVCNEAALIAARG--ENSQVTMEHFEAAIDR 568 (811)
Q Consensus 529 ~t~GfSgaDL----~~LvneAal~Aar~--~~~~It~ed~~~Al~r 568 (811)
.+.....++| .++|+.|+..+.+. ....|+.+|+++++..
T Consensus 295 ~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 295 YTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp HCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred CChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 3322334444 45555555555443 3346999999998853
No 40
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.79 E-value=3e-18 Score=186.79 Aligned_cols=226 Identities=19% Similarity=0.184 Sum_probs=163.7
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---------CCCeEEeec
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---------GVPFLSISG 392 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---------gvpfi~vs~ 392 (811)
...+++++|.++.++.+..++.... ....+.+++|+||||||||++|+++++++ +.+++.++|
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3456899999999888887764321 12346789999999999999999999988 889999998
Q ss_pred hhhhhh----------------hhcCchhH-HHHHHHHHHhc-CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHH
Q 047690 393 SDFMEM----------------FVGVGPSR-VRNLFQEARQC-APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLL 454 (811)
Q Consensus 393 s~~~~~----------------~vG~~~~~-vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL 454 (811)
....+. ..+..... +..++...... .|+||||||+|.+...+ .....+..++
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----------~~~~~l~~l~ 156 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----------GGQDLLYRIT 156 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----------THHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----------CCChHHHhHh
Confidence 753211 11222233 34444444333 48899999999995421 1345777777
Q ss_pred HhhhcCCCCCcEEEEecCCCC---cccchhhcCCCCcce-eeeccCCCHHHHHHHHHHHHhh--ccCCCCCchhhhHHHh
Q 047690 455 VEMDGFGTTAGVVVIAGTNRP---DILDKALLRPGRFDR-QITIDKPDIKGRDQIFQVYLKK--IKLDHEPSYYSQRLAA 528 (811)
Q Consensus 455 ~emDg~~~~~~VIVIaaTN~p---d~LDpALlRpGRFdr-~I~v~~Pd~~eR~eIL~~~l~~--~~l~~~~d~~l~~LA~ 528 (811)
..++......++++|++||.+ +.+++.+.+ ||.. .+.+++|+.+++.+|++.++.. .....+.+ .++.++.
T Consensus 157 ~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~ 233 (387)
T 2v1u_A 157 RINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD-VVPLCAA 233 (387)
T ss_dssp HGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS-HHHHHHH
T ss_pred hchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHH
Confidence 776654325678899999987 678999998 8875 8999999999999999999875 22222222 2466666
Q ss_pred hCC---CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 047690 529 LTP---GFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 529 ~t~---GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rv 569 (811)
.+. | .++.+.++|+.|...|..++...|+.+|+..|+..+
T Consensus 234 ~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 234 LAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 665 5 578889999999988888788899999999999876
No 41
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.78 E-value=7.4e-19 Score=193.24 Aligned_cols=223 Identities=22% Similarity=0.267 Sum_probs=148.8
Q ss_pred ccccchHhHHHHHHHHHH-hcCchhh-h-hcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh-hhcC
Q 047690 327 DVAGCDEAKQEIMEFVHF-LKNPRKY-E-DLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM-FVGV 402 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~-Lk~p~~~-~-~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~-~vG~ 402 (811)
.|+|++++++.+...+.. ++..... . ......+.++||+||||||||++|+++|..++.||+.++|+++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 379999999999988753 1111110 0 0112356899999999999999999999999999999999998754 7776
Q ss_pred c-hhHHHHHHHHH----HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC-----------CCCcE
Q 047690 403 G-PSRVRNLFQEA----RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG-----------TTAGV 466 (811)
Q Consensus 403 ~-~~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~-----------~~~~V 466 (811)
. ...++.+|..+ ....+|||||||||.+...+.... .+.+...+.+.+.||..|++.. ...++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~-~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~ 174 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPS-ITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 174 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC----CHHHHHHHHHHHHHHHHCC----------------C
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccc-cccccchHHHHHHHHHHhcCceeeccCccccccCCCce
Confidence 5 55677787765 445679999999999987654321 1223333457888888888531 01123
Q ss_pred EEEecCCC--------C----------c------------------------------c-----cchhhcCCCCcceeee
Q 047690 467 VVIAGTNR--------P----------D------------------------------I-----LDKALLRPGRFDRQIT 493 (811)
Q Consensus 467 IVIaaTN~--------p----------d------------------------------~-----LDpALlRpGRFdr~I~ 493 (811)
++|++||. . . . ++|+|+. ||+..+.
T Consensus 175 ~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~ 252 (363)
T 3hws_A 175 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVAT 252 (363)
T ss_dssp CCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEE
T ss_pred EEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeee
Confidence 34444443 1 1 1 6788887 9999999
Q ss_pred ccCCCHHHHHHHHHH----HHhhc-------cCCCC-CchhhhHHHh--hCCCCcHHHHHHHHHHHHHHHHHc
Q 047690 494 IDKPDIKGRDQIFQV----YLKKI-------KLDHE-PSYYSQRLAA--LTPGFAGADIANVCNEAALIAARG 552 (811)
Q Consensus 494 v~~Pd~~eR~eIL~~----~l~~~-------~l~~~-~d~~l~~LA~--~t~GfSgaDL~~LvneAal~Aar~ 552 (811)
+.+|+.+++.+|+.. +++.. +.... .+..++.|+. ....+..++|.++++++...+..+
T Consensus 253 ~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 253 LNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 999999999999886 33211 11111 1222455554 334455688888888877666544
No 42
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.78 E-value=2.4e-18 Score=194.75 Aligned_cols=222 Identities=17% Similarity=0.235 Sum_probs=156.1
Q ss_pred CCCccccccc-cchH--hHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-----CCCeEEee
Q 047690 320 KNKVYFRDVA-GCDE--AKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSIS 391 (811)
Q Consensus 320 ~~~v~f~dV~-G~ee--ak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs 391 (811)
.+..+|++++ |.+. +...+..++ ..+ + . +.+++|+||||||||+||+++++++ +.++++++
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a---~~~------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVA---KHP------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHH---HST------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHH---hCC------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 3466899988 6443 333333333 222 1 2 5689999999999999999999988 89999999
Q ss_pred chhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEec
Q 047690 392 GSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAG 471 (811)
Q Consensus 392 ~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaa 471 (811)
+.++...+...........|.......|+||||||+|.+..+ ...+. .|+..++........+||++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~----------~~~q~---~l~~~l~~l~~~~~~iIitt 234 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK----------TGVQT---ELFHTFNELHDSGKQIVICS 234 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC----------HHHHH---HHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC----------hHHHH---HHHHHHHHHHHCCCeEEEEE
Confidence 999876554332222122343333336899999999998421 11222 23333332223445667766
Q ss_pred CCCCcc---cchhhcCCCCcc--eeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHH
Q 047690 472 TNRPDI---LDKALLRPGRFD--RQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAA 546 (811)
Q Consensus 472 TN~pd~---LDpALlRpGRFd--r~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAa 546 (811)
.+.+.. ++++|++ ||. ..+.++.|+.++|.+||+.++...++..+.+. +..++..+.| +.+++.++++.+.
T Consensus 235 ~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~-l~~la~~~~g-n~R~l~~~L~~~~ 310 (440)
T 2z4s_A 235 DREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLL 310 (440)
T ss_dssp SSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHCCS-CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHH
Confidence 666665 7899999 886 78999999999999999999987665544443 5788888875 8999999999998
Q ss_pred HHHHHcCCCccCHHHHHHHHHHHh
Q 047690 547 LIAARGENSQVTMEHFEAAIDRVI 570 (811)
Q Consensus 547 l~Aar~~~~~It~ed~~~Al~rvi 570 (811)
..|...+ ..|+.+++.+++....
T Consensus 311 ~~a~~~~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 311 VYKETTG-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHSS-SCCCHHHHHHHTSTTT
T ss_pred HHHHHhC-CCCCHHHHHHHHHHHh
Confidence 8877654 4699999999986543
No 43
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.78 E-value=1.7e-17 Score=165.51 Aligned_cols=202 Identities=22% Similarity=0.197 Sum_probs=147.5
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-----CCCeEEeechhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSISGSDF 395 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs~s~~ 395 (811)
.+.+|++++|.+++++.+.+.+.. . .+.++||+||||||||++|+++++++ ..+++.+++++.
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~---~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVER---K---------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHT---T---------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhC---C---------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 346799999999999998887752 1 12349999999999999999999875 567888887654
Q ss_pred hhhhhcCchhHHHHHHHHHH------hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEE
Q 047690 396 MEMFVGVGPSRVRNLFQEAR------QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVI 469 (811)
Q Consensus 396 ~~~~vG~~~~~vr~lF~~A~------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVI 469 (811)
.. ...++..+.... ...+++|+|||+|.+.. . ..+.|+..++. ...++++|
T Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~---~~~~l~~~l~~--~~~~~~~i 136 (226)
T 2chg_A 80 RG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------D---AQAALRRTMEM--YSKSCRFI 136 (226)
T ss_dssp TC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH------------H---HHHHHHHHHHH--TTTTEEEE
T ss_pred cC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH------------H---HHHHHHHHHHh--cCCCCeEE
Confidence 32 223333333322 24588999999999832 2 23334444443 23467888
Q ss_pred ecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHH
Q 047690 470 AGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIA 549 (811)
Q Consensus 470 aaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~A 549 (811)
++||.++.+++++.+ ||. .+.++.|+.+++.++++.++...+...+.+ .++.++..+.| ..+.+.++++.++..+
T Consensus 137 ~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~l~~~l~~~~~~~ 211 (226)
T 2chg_A 137 LSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITED-GLEALIYISGG-DFRKAINALQGAAAIG 211 (226)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHTT-CHHHHHHHHHHHHHTC
T ss_pred EEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHhcC
Confidence 889999999999999 887 899999999999999999987766554433 35677777765 6677777777665443
Q ss_pred HHcCCCccCHHHHHHHHH
Q 047690 550 ARGENSQVTMEHFEAAID 567 (811)
Q Consensus 550 ar~~~~~It~ed~~~Al~ 567 (811)
..|+.+|+++++.
T Consensus 212 -----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 -----EVVDADTIYQITA 224 (226)
T ss_dssp -----SCBCHHHHHHHHH
T ss_pred -----ceecHHHHHHHhc
Confidence 6899999999874
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.76 E-value=4.4e-18 Score=183.32 Aligned_cols=203 Identities=19% Similarity=0.194 Sum_probs=138.7
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhc
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVG 401 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG 401 (811)
+.+|++++|++++++.|.+.+. ..+.|..+|++||||||||++|+++|++++.+++.+++++..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~----- 85 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK----- 85 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-----
T ss_pred CCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-----
Confidence 4689999999999999998876 234677789999999999999999999999999999987742
Q ss_pred CchhHHHHHHHHHHhc-----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 402 VGPSRVRNLFQEARQC-----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 402 ~~~~~vr~lF~~A~~~-----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
...++..+...... .++||||||+|.+.. .+ ..+.|+..++.. ..++.+|++||.+.
T Consensus 86 --~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-----------~~---~~~~L~~~le~~--~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 --IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-----------AE---SQRHLRSFMEAY--SSNCSIIITANNID 147 (324)
T ss_dssp --HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-----------HH---HHHHHHHHHHHH--GGGCEEEEEESSGG
T ss_pred --HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-----------HH---HHHHHHHHHHhC--CCCcEEEEEeCCcc
Confidence 34555555544333 468999999999841 12 233444444432 34678888999999
Q ss_pred ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHh-------hccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHH
Q 047690 477 ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLK-------KIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIA 549 (811)
Q Consensus 477 ~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~-------~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~A 549 (811)
.+++++++ ||. .+.|+.|+.++|.+|++.++. ..+...+....++.++..+.| ..+++.+.++.++
T Consensus 148 ~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~~--- 220 (324)
T 3u61_B 148 GIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSYS--- 220 (324)
T ss_dssp GSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHHG---
T ss_pred ccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHHh---
Confidence 99999999 994 799999999998777665543 233433331335778888765 3344444444433
Q ss_pred HHcCCCccCHHHHHHHHHH
Q 047690 550 ARGENSQVTMEHFEAAIDR 568 (811)
Q Consensus 550 ar~~~~~It~ed~~~Al~r 568 (811)
....|+.+++..++..
T Consensus 221 ---~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 221 ---SKGVLDAGILSLVTND 236 (324)
T ss_dssp ---GGTCBCC---------
T ss_pred ---ccCCCCHHHHHHHhCC
Confidence 3345898888887643
No 45
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.76 E-value=1.1e-17 Score=180.63 Aligned_cols=198 Identities=20% Similarity=0.256 Sum_probs=138.4
Q ss_pred CCccccccc-cc--hHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechh
Q 047690 321 NKVYFRDVA-GC--DEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSD 394 (811)
Q Consensus 321 ~~v~f~dV~-G~--eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~ 394 (811)
+..+|++++ |. ..+...+..++. .+. ..+.+++|+||||||||+||+++++++ +.+++++++.+
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~---~~~-------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALE---NLG-------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHH---TTT-------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHh---CcC-------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 457899997 43 444555554443 221 245789999999999999999999988 89999999999
Q ss_pred hhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCC
Q 047690 395 FMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNR 474 (811)
Q Consensus 395 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~ 474 (811)
+...+.+.........|..... .+++|||||+|.+... ......+..++..+ ......+|+++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~----------~~~~~~l~~~l~~~---~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGK----------ERTQIEFFHIFNTL---YLLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTC----------HHHHHHHHHHHHHH---HHTTCEEEEEESSC
T ss_pred HHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCC----------hHHHHHHHHHHHHH---HHCCCeEEEEecCC
Confidence 8766544332222223333322 4789999999998421 12222233333222 23345677888887
Q ss_pred Cc---ccchhhcCCCCcc--eeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHH
Q 047690 475 PD---ILDKALLRPGRFD--RQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALI 548 (811)
Q Consensus 475 pd---~LDpALlRpGRFd--r~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~ 548 (811)
+. .++++|.+ ||+ ..+.+++ +.++|.+|++.++...+...+.+. ++.++..+ ...+++.++++.+...
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~-l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEV-IDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHH-HHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 76 68999998 886 6789999 999999999999987766555443 67888888 4788999998876554
No 46
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.75 E-value=3.9e-17 Score=176.77 Aligned_cols=220 Identities=19% Similarity=0.235 Sum_probs=139.9
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcC-------CCe-----
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESG-------VPF----- 387 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~g-------vpf----- 387 (811)
.+..+|++++|++++++.+.... + .+ .+.++||+||||||||++|+++|+.++ .+|
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 35678999999999877643222 1 11 134699999999999999999999876 232
Q ss_pred ---------------------EEeechhhhhhhhcCchhHHHHHHHHH---------HhcCCeEEEEcCcchhhhhcCCC
Q 047690 388 ---------------------LSISGSDFMEMFVGVGPSRVRNLFQEA---------RQCAPSIIFIDEIDAIGRARGRG 437 (811)
Q Consensus 388 ---------------------i~vs~s~~~~~~vG~~~~~vr~lF~~A---------~~~aP~ILfIDEIDaL~~~r~~~ 437 (811)
+.+..........|. ..+...|..+ ....++||||||||.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~----- 158 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGA--LDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED----- 158 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCE--ECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH-----
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheee--chhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH-----
Confidence 211111001111111 0011222221 112368999999999832
Q ss_pred CCCCCchHHHHHHHHHHHhhhc----CC-------CCCcEEEEecCCCCc-ccchhhcCCCCcceeeeccCC-CHHHHHH
Q 047690 438 GFSGANDERESTLNQLLVEMDG----FG-------TTAGVVVIAGTNRPD-ILDKALLRPGRFDRQITIDKP-DIKGRDQ 504 (811)
Q Consensus 438 ~~~~~~~e~~~tLnqLL~emDg----~~-------~~~~VIVIaaTN~pd-~LDpALlRpGRFdr~I~v~~P-d~~eR~e 504 (811)
. ..+.|+..|+. +. ...++++|++||..+ .++++|++ ||+..+.++.| +.+++.+
T Consensus 159 -------~---~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~ 226 (350)
T 1g8p_A 159 -------H---IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVE 226 (350)
T ss_dssp -------H---HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHH
T ss_pred -------H---HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHH
Confidence 2 23344443332 11 123689999999744 89999999 99988999999 6777878
Q ss_pred HHHHHHhh-----------------------------ccCCCCCchhhhHHHhhCC---CCcHHHHHHHHHHHHHHHHHc
Q 047690 505 IFQVYLKK-----------------------------IKLDHEPSYYSQRLAALTP---GFAGADIANVCNEAALIAARG 552 (811)
Q Consensus 505 IL~~~l~~-----------------------------~~l~~~~d~~l~~LA~~t~---GfSgaDL~~LvneAal~Aar~ 552 (811)
|++.++.. ..+..+. ..++.++.... .-+.+.+.++++.|...|..+
T Consensus 227 il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~-~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~ 305 (350)
T 1g8p_A 227 VIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPN-TALYDCAALCIALGSDGLRGELTLLRSARALAALE 305 (350)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCH-HHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHc
Confidence 88763211 1111111 12334444332 236799999999998888888
Q ss_pred CCCccCHHHHHHHHHHHhc
Q 047690 553 ENSQVTMEHFEAAIDRVIG 571 (811)
Q Consensus 553 ~~~~It~ed~~~Al~rvi~ 571 (811)
+...|+.+|+.+|+..++.
T Consensus 306 ~~~~v~~~~v~~a~~~~l~ 324 (350)
T 1g8p_A 306 GATAVGRDHLKRVATMALS 324 (350)
T ss_dssp TCSBCCHHHHHHHHHHHHG
T ss_pred CCCcCCHHHHHHHHHHHHh
Confidence 8888999999999987754
No 47
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.75 E-value=6.5e-18 Score=191.68 Aligned_cols=205 Identities=20% Similarity=0.258 Sum_probs=150.5
Q ss_pred CccccccccchHhH---HHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 322 KVYFRDVAGCDEAK---QEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 322 ~v~f~dV~G~eeak---~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
+.+|++++|+++++ ..|...+.. .+ ..++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~-~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~---- 85 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEA-----------GH-LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT---- 85 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHH-----------TC-CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT----
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHc-----------CC-CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc----
Confidence 45899999999999 566665542 11 257999999999999999999999999999998754
Q ss_pred hhcCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecC--
Q 047690 399 FVGVGPSRVRNLFQEARQ----CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGT-- 472 (811)
Q Consensus 399 ~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaT-- 472 (811)
.+...++.+|..+.. ..++||||||||.+... ..+.|+..++. ..+++|++|
T Consensus 86 ---~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~---------------~q~~LL~~le~----~~v~lI~att~ 143 (447)
T 3pvs_A 86 ---SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS---------------QQDAFLPHIED----GTITFIGATTE 143 (447)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------------CCHHHHHT----TSCEEEEEESS
T ss_pred ---CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH---------------HHHHHHHHHhc----CceEEEecCCC
Confidence 244567777777653 35789999999998321 22345555553 346666655
Q ss_pred CCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhcc-------CCCCCchhhhHHHhhCCCCcHHHHHHHHHHH
Q 047690 473 NRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIK-------LDHEPSYYSQRLAALTPGFAGADIANVCNEA 545 (811)
Q Consensus 473 N~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~-------l~~~~d~~l~~LA~~t~GfSgaDL~~LvneA 545 (811)
|....++++|++ |+. .+.++.|+.+++..+++.++.... ...+ +..++.++..+.| ..+++.++++.+
T Consensus 144 n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~-~~al~~L~~~~~G-d~R~lln~Le~a 218 (447)
T 3pvs_A 144 NPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLP-DETRRAIAELVNG-DARRALNTLEMM 218 (447)
T ss_dssp CGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECC-HHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred CcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCC-HHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 444579999999 885 788999999999999999987622 1122 2235778888665 778889999988
Q ss_pred HHHHHHc--CCCccCHHHHHHHHHHH
Q 047690 546 ALIAARG--ENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 546 al~Aar~--~~~~It~ed~~~Al~rv 569 (811)
+..+... +...||.+++.+++.+.
T Consensus 219 ~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 219 ADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHhcccccCCCCccCHHHHHHHHhhh
Confidence 7766423 44579999999998643
No 48
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.74 E-value=4.3e-17 Score=178.45 Aligned_cols=217 Identities=20% Similarity=0.276 Sum_probs=156.2
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-----------CCCeEEee
Q 047690 323 VYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-----------GVPFLSIS 391 (811)
Q Consensus 323 v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-----------gvpfi~vs 391 (811)
..+++++|.++.++.+.+.+..... ...+.+++|+||||||||++|+++++++ +.+++.++
T Consensus 17 ~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 17 SVFKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp HHCSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 4458999999999999988764322 2346789999999999999999999987 89999999
Q ss_pred chhhh-h----------hh-------hcCchhH-HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHH-HH
Q 047690 392 GSDFM-E----------MF-------VGVGPSR-VRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDEREST-LN 451 (811)
Q Consensus 392 ~s~~~-~----------~~-------vG~~~~~-vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~t-Ln 451 (811)
|.+.. . .+ .+..... +..++..+... ++||||||+|.+...+. ... +.
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~-----------~~~~l~ 156 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRG-----------GDIVLY 156 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTT-----------SHHHHH
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCC-----------CceeHH
Confidence 87643 1 11 1222222 44444444433 34999999999964321 123 44
Q ss_pred HHHHhhhcCCCCCcEEEEecCCCC---cccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhh-c-cCCCCCchhhhHH
Q 047690 452 QLLVEMDGFGTTAGVVVIAGTNRP---DILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKK-I-KLDHEPSYYSQRL 526 (811)
Q Consensus 452 qLL~emDg~~~~~~VIVIaaTN~p---d~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~-~-~l~~~~d~~l~~L 526 (811)
.|+... .++.+|++||.+ +.+++++++ ||+..+++++|+.+++.+|++.++.. . ....+. ..++.+
T Consensus 157 ~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~i 227 (384)
T 2qby_B 157 QLLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD-EILSYI 227 (384)
T ss_dssp HHHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS-HHHHHH
T ss_pred HHhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH-HHHHHH
Confidence 554332 678899999987 678999988 88889999999999999999999874 1 122222 234667
Q ss_pred HhhCCC--CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 047690 527 AALTPG--FAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVI 570 (811)
Q Consensus 527 A~~t~G--fSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rvi 570 (811)
++.+.+ -..+.+.++|+.|...|. +...|+.+|+..|++.+.
T Consensus 228 ~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 228 AAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 776652 246778888998877765 567899999999998763
No 49
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.74 E-value=3.3e-17 Score=166.66 Aligned_cols=207 Identities=13% Similarity=0.101 Sum_probs=144.0
Q ss_pred CCccccccccc---hHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechh
Q 047690 321 NKVYFRDVAGC---DEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSD 394 (811)
Q Consensus 321 ~~v~f~dV~G~---eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~ 394 (811)
+..+|++++|. +++.+.+..++. . ..+.+++|+||||||||++|+++++++ +.+++.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS---G---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH---T---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 45689999973 345555554443 1 135789999999999999999999876 47899999988
Q ss_pred hhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcE-EEEecCC
Q 047690 395 FMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGV-VVIAGTN 473 (811)
Q Consensus 395 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~V-IVIaaTN 473 (811)
+...+.. .+ .. ...|++|+|||+|.+.. .......+..++... .....+ +|+++++
T Consensus 91 ~~~~~~~----~~----~~--~~~~~vliiDe~~~~~~----------~~~~~~~l~~~l~~~---~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 91 HASISTA----LL----EG--LEQFDLICIDDVDAVAG----------HPLWEEAIFDLYNRV---AEQKRGSLIVSASA 147 (242)
T ss_dssp GGGSCGG----GG----TT--GGGSSEEEEETGGGGTT----------CHHHHHHHHHHHHHH---HHHCSCEEEEEESS
T ss_pred HHHHHHH----HH----Hh--ccCCCEEEEeccccccC----------CHHHHHHHHHHHHHH---HHcCCCeEEEEcCC
Confidence 7654321 11 11 13478999999999832 111123333333332 222333 5555555
Q ss_pred CCc---ccchhhcCCCCcc--eeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHH
Q 047690 474 RPD---ILDKALLRPGRFD--RQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALI 548 (811)
Q Consensus 474 ~pd---~LDpALlRpGRFd--r~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~ 548 (811)
.++ .+++++.+ ||. ..+.++.|+.+++.++++.++...+...+.+ .++.++..+.| +.+++.++++.+...
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPED-VGRFLLNRMAR-DLRTLFDVLDRLDKA 223 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHH-HHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 554 45688888 886 8999999999999999999998766554443 35778888866 789999999998877
Q ss_pred HHHcCCCccCHHHHHHHHH
Q 047690 549 AARGENSQVTMEHFEAAID 567 (811)
Q Consensus 549 Aar~~~~~It~ed~~~Al~ 567 (811)
|...+ ..|+.+++++++.
T Consensus 224 a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 224 SMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHT-CCCCHHHHHHHHT
T ss_pred HHHhC-CCCcHHHHHHHhh
Confidence 75444 5699999998873
No 50
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.74 E-value=7.3e-17 Score=162.41 Aligned_cols=202 Identities=21% Similarity=0.322 Sum_probs=147.5
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC---------------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP--------------- 386 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp--------------- 386 (811)
+..|++++|.+++++.|.+.+.. .+.+..++|+||||||||++|+++++++...
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 87 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHH
T ss_pred CccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 45799999999999999888753 2335679999999999999999999877432
Q ss_pred ---------eEEeechhhhhhhhcCchhHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHH
Q 047690 387 ---------FLSISGSDFMEMFVGVGPSRVRNLFQEAR----QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQL 453 (811)
Q Consensus 387 ---------fi~vs~s~~~~~~vG~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqL 453 (811)
++.++... ......++.++..+. ...|.+|+|||+|.+. ...++.|
T Consensus 88 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~---------------~~~~~~l 146 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS---------------RHSFNAL 146 (250)
T ss_dssp HHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC---------------HHHHHHH
T ss_pred HHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc---------------HHHHHHH
Confidence 12222111 011234555555432 2347899999999972 1244556
Q ss_pred HHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCC
Q 047690 454 LVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGF 533 (811)
Q Consensus 454 L~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~Gf 533 (811)
+..++. ...++++|++||.++.+++++.+ |+ ..+.++.|+.++..++++.++...+...+.+ .++.+++.+.|
T Consensus 147 ~~~l~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~G- 219 (250)
T 1njg_A 147 LKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPR-ALQLLARAAEG- 219 (250)
T ss_dssp HHHHHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHH-HHHHHHHHHTT-
T ss_pred HHHHhc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHcCC-
Confidence 666654 24578888889999999999988 76 6899999999999999999998765544433 35788888877
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 534 AGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 534 SgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
.++.+.++++.|... ....|+.+|+++++
T Consensus 220 ~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 220 SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 789999999887543 33479999999875
No 51
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=2.3e-17 Score=190.25 Aligned_cols=222 Identities=20% Similarity=0.283 Sum_probs=147.4
Q ss_pred CccccccccchHhHHHHHHHHHHhc--CchhhhhcCC---CCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLK--NPRKYEDLGA---KIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk--~p~~~~~lg~---~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
+.+|++|+|.+++++.|.+++.... .+..+...|. ..++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 4589999999999999998887421 1222333333 3578999999999999999999999999999999998865
Q ss_pred hhhhcCc-------hhHHHHHHHHH-----HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCC
Q 047690 397 EMFVGVG-------PSRVRNLFQEA-----RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTA 464 (811)
Q Consensus 397 ~~~vG~~-------~~~vr~lF~~A-----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~ 464 (811)
....... ...++.+|..+ ....++||||||+|.+.... .. .++.|+..++. ...
T Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~---------~~---~l~~L~~~l~~--~~~ 180 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD---------RG---GVGQLAQFCRK--TST 180 (516)
T ss_dssp CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS---------TT---HHHHHHHHHHH--CSS
T ss_pred hHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh---------HH---HHHHHHHHHHh--cCC
Confidence 4321110 01133344443 23468999999999994321 11 23344444433 334
Q ss_pred cEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHH
Q 047690 465 GVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNE 544 (811)
Q Consensus 465 ~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~Lvne 544 (811)
.+|+|+++.....+++ +. |+...+.|+.|+.+++.++|...+...+...+.+. +..++..+.| |+..+++.
T Consensus 181 ~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~-l~~la~~s~G----diR~~i~~ 251 (516)
T 1sxj_A 181 PLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV-IDRLIQTTRG----DIRQVINL 251 (516)
T ss_dssp CEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHTTT----CHHHHHHH
T ss_pred CEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC----cHHHHHHH
Confidence 5677666655455554 43 44568999999999999999988877665554443 5788888765 44444444
Q ss_pred HHHHHHHcCCCccCHHHHHHHHHH
Q 047690 545 AALIAARGENSQVTMEHFEAAIDR 568 (811)
Q Consensus 545 Aal~Aar~~~~~It~ed~~~Al~r 568 (811)
....+. ....|+.+++..++..
T Consensus 252 L~~~~~--~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 252 LSTIST--TTKTINHENINEISKA 273 (516)
T ss_dssp HTHHHH--HSSCCCTTHHHHHHHH
T ss_pred HHHHHh--cCCCCchHHHHHHHHh
Confidence 333332 3456888888877754
No 52
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.73 E-value=2.6e-17 Score=178.05 Aligned_cols=215 Identities=17% Similarity=0.124 Sum_probs=149.1
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh--hhhhc
Q 047690 324 YFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM--EMFVG 401 (811)
Q Consensus 324 ~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~--~~~vG 401 (811)
.+++++|++++++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++.... ..+.|
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 567899999999888766542 25899999999999999999999999999999874211 11111
Q ss_pred CchhH-HHHHHHHHHhcC---CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcC---------CCCCcEEE
Q 047690 402 VGPSR-VRNLFQEARQCA---PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGF---------GTTAGVVV 468 (811)
Q Consensus 402 ~~~~~-vr~lF~~A~~~a---P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~---------~~~~~VIV 468 (811)
...-. ....|. .... .+||||||+|.+. .. +.+.|+..|+.. .....++|
T Consensus 91 ~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~------------~~---~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 91 TMIYNQHKGNFE--VKKGPVFSNFILADEVNRSP------------AK---VQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EEEEETTTTEEE--EEECTTCSSEEEEETGGGSC------------HH---HHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred ceeecCCCCceE--eccCcccccEEEEEccccCC------------HH---HHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 10000 000000 0112 3799999999872 22 334444444421 12346788
Q ss_pred EecCCCCc-----ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccC----------------------CCCCch
Q 047690 469 IAGTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKL----------------------DHEPSY 521 (811)
Q Consensus 469 IaaTN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l----------------------~~~~d~ 521 (811)
|+|+|..+ .+++++++ ||+..+.++.|+.+++.+||+.++..... ..+ +.
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~-~~ 230 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTIS-ES 230 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCC-HH
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCC-HH
Confidence 88888554 38999999 99989999999999999999998765311 111 11
Q ss_pred hhhHHHhh-------------------CCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcC
Q 047690 522 YSQRLAAL-------------------TPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGG 572 (811)
Q Consensus 522 ~l~~LA~~-------------------t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rvi~g 572 (811)
.++.++.. ..|.|.+.+.++++.|...|..+++..|+.+|+.+++..++..
T Consensus 231 ~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 231 LEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 12333321 1266899999999999888988899999999999999888654
No 53
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.72 E-value=2e-16 Score=172.03 Aligned_cols=226 Identities=19% Similarity=0.214 Sum_probs=160.3
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc------CCCeEEeechhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES------GVPFLSISGSDF 395 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~------gvpfi~vs~s~~ 395 (811)
...+++++|.++.++.|.+.+.... ....+..++|+||||||||+|++++++++ +.+++.++|...
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~--------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLY--------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGG--------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHH--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 4566899999998888877654321 12346789999999999999999999988 889999998753
Q ss_pred hh------hh----------hcCchhH-HHHHHHHHHhcC-CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhh
Q 047690 396 ME------MF----------VGVGPSR-VRNLFQEARQCA-PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEM 457 (811)
Q Consensus 396 ~~------~~----------vG~~~~~-vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~em 457 (811)
.. .. .+..... ...++....... |+||+|||+|.+..... ...+..++..+
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-----------~~~l~~l~~~~ 156 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-----------DDILYKLSRIN 156 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-----------STHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-----------CHHHHHHhhch
Confidence 21 11 1112222 344444444433 89999999999964321 12466666666
Q ss_pred hcCCCCCcEEEEecCCCC---cccchhhcCCCCcc-eeeeccCCCHHHHHHHHHHHHhhccCCCC-CchhhhHHHhhCC-
Q 047690 458 DGFGTTAGVVVIAGTNRP---DILDKALLRPGRFD-RQITIDKPDIKGRDQIFQVYLKKIKLDHE-PSYYSQRLAALTP- 531 (811)
Q Consensus 458 Dg~~~~~~VIVIaaTN~p---d~LDpALlRpGRFd-r~I~v~~Pd~~eR~eIL~~~l~~~~l~~~-~d~~l~~LA~~t~- 531 (811)
+.. ...++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..+|++.++........ .+..++.++..+.
T Consensus 157 ~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (386)
T 2qby_A 157 SEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAR 233 (386)
T ss_dssp HSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHH
T ss_pred hhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence 654 34578888888877 467888888 675 58999999999999999998864221111 1223455666665
Q ss_pred --CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 047690 532 --GFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVI 570 (811)
Q Consensus 532 --GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rvi 570 (811)
| .++.+.++|+.|...|...+...|+.+|+..|+..+.
T Consensus 234 ~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 234 EHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp TTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred hcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 4 5777888999998888887888999999999998764
No 54
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.72 E-value=4.2e-16 Score=169.84 Aligned_cols=213 Identities=18% Similarity=0.274 Sum_probs=159.0
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcC
Q 047690 323 VYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGV 402 (811)
Q Consensus 323 v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~ 402 (811)
.+|++++|.+.+++.+...+..-+.+ ...+..++|+||||||||+||+++|+++++++...++..+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-----
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-----
Confidence 37999999999888887776532111 234567999999999999999999999999988887755421
Q ss_pred chhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC----------------CCCcE
Q 047690 403 GPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG----------------TTAGV 466 (811)
Q Consensus 403 ~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~----------------~~~~V 466 (811)
...+..++.. ...++|+||||+|.+.+ ..+..+.. .++.+. .-..+
T Consensus 90 -~~~l~~~~~~--~~~~~v~~iDE~~~l~~------------~~~e~L~~---~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 90 -QGDMAAILTS--LERGDVLFIDEIHRLNK------------AVEELLYS---AIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp -HHHHHHHHHH--CCTTCEEEEETGGGCCH------------HHHHHHHH---HHHTSCCCC---------------CCC
T ss_pred -HHHHHHHHHH--ccCCCEEEEcchhhcCH------------HHHHHHHH---HHHhcccceeeccCcccccccccCCCe
Confidence 2233333322 23468999999999832 12222322 222211 01246
Q ss_pred EEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHH
Q 047690 467 VVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAA 546 (811)
Q Consensus 467 IVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAa 546 (811)
.++++|+++..|++.+++ ||...+.++.|+.+++.+|++...+..+...+.+. +..++..+.| +++++.++++.+.
T Consensus 152 ~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~-~~~ia~~~~G-~~R~a~~ll~~~~ 227 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAA-AEMIAKRSRG-TPRIAIRLTKRVR 227 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHH-HHHHHHTSTT-CHHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHhcCC-ChHHHHHHHHHHH
Confidence 777899999999999999 99888999999999999999999887665544433 5788888887 6789999999998
Q ss_pred HHHHHcCCCccCHHHHHHHHHHH
Q 047690 547 LIAARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 547 l~Aar~~~~~It~ed~~~Al~rv 569 (811)
..|..++...||.+++.+|++.+
T Consensus 228 ~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 228 DMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHh
Confidence 88887778889999999999875
No 55
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.71 E-value=3.4e-17 Score=196.67 Aligned_cols=223 Identities=23% Similarity=0.291 Sum_probs=162.8
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----------CCCeEEeec
Q 047690 323 VYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSISG 392 (811)
Q Consensus 323 v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----------gvpfi~vs~ 392 (811)
-+|++|+|.++.++.+.+++. . ..+.++||+||||||||++|+++|..+ +.+++.+++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~---~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLC---R---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred CCCCCccCCHHHHHHHHHHHh---c---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 479999999988888777653 1 235689999999999999999999976 666888888
Q ss_pred hhhh--hhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEe
Q 047690 393 SDFM--EMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIA 470 (811)
Q Consensus 393 s~~~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIa 470 (811)
+.+. ..+.|..+.+++.+|..+....++||||||+|.+.+.+... ... ....+.|. .+-....+.+|+
T Consensus 251 ~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---~~~---~~~~~~L~----~~l~~~~~~~I~ 320 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS---GGQ---VDAANLIK----PLLSSGKIRVIG 320 (758)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS---SCH---HHHHHHHS----SCSSSCCCEEEE
T ss_pred HHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC---cch---HHHHHHHH----HHHhCCCeEEEE
Confidence 7776 45778888899999999988889999999999997643211 111 12222222 222356788999
Q ss_pred cCCCCc-----ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhc----cCCCCCchhhhHHHhhCC-----CCcHH
Q 047690 471 GTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKI----KLDHEPSYYSQRLAALTP-----GFAGA 536 (811)
Q Consensus 471 aTN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~----~l~~~~d~~l~~LA~~t~-----GfSga 536 (811)
+||.++ .+|++|.| ||+ .+.|+.|+.++|.+||+.++... ...... ..+..++..+. .+.+.
T Consensus 321 at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~-~al~~~~~~s~~~i~~~~lp~ 396 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTA-KAVRAAVELAVKYINDRHLPD 396 (758)
T ss_dssp EECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHCTTSCTTH
T ss_pred EeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHhhhhcccccCch
Confidence 998754 47899999 997 79999999999999999887652 222222 22345555433 35677
Q ss_pred HHHHHHHHHHHHHHH----cCCCccCHHHHHHHHHHHhc
Q 047690 537 DIANVCNEAALIAAR----GENSQVTMEHFEAAIDRVIG 571 (811)
Q Consensus 537 DL~~LvneAal~Aar----~~~~~It~ed~~~Al~rvi~ 571 (811)
.+..++++|+..+.. .....|+.+|+..++.+..+
T Consensus 397 ~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ 435 (758)
T 1r6b_X 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435 (758)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhcC
Confidence 888999998766554 24567999999999988753
No 56
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=5e-16 Score=168.01 Aligned_cols=207 Identities=19% Similarity=0.196 Sum_probs=146.5
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcC------CCeEEeechh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESG------VPFLSISGSD 394 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~g------vpfi~vs~s~ 394 (811)
.+.+|++++|++++++.|...+. . ...+ ++||+||||||||++|+++|++++ ..++.+++++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~---~--------~~~~-~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLK---S--------ANLP-HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTT---C--------TTCC-CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHh---c--------CCCC-EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 35689999999999988877653 1 1223 499999999999999999999853 4688888776
Q ss_pred hhhhhhcCchhHHHHHHHHHHh----------------cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh
Q 047690 395 FMEMFVGVGPSRVRNLFQEARQ----------------CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD 458 (811)
Q Consensus 395 ~~~~~vG~~~~~vr~lF~~A~~----------------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD 458 (811)
.. +...+++.+..... ..+.||||||+|.+.. . ..+.|+..|+
T Consensus 100 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~------------~---~~~~Ll~~le 158 (353)
T 1sxj_D 100 ER------GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA------------D---AQSALRRTME 158 (353)
T ss_dssp CC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH------------H---HHHHHHHHHH
T ss_pred cc------chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH------------H---HHHHHHHHHH
Confidence 42 11222222222111 2346999999999832 1 2344555555
Q ss_pred cCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHH
Q 047690 459 GFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADI 538 (811)
Q Consensus 459 g~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL 538 (811)
.. .....+|.+||.++.+++++++ |+. .+.++.|+.++...+++..+...+...+.+ .++.++..+.| ..+.+
T Consensus 159 ~~--~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~l~~l~~~~~G-~~r~~ 231 (353)
T 1sxj_D 159 TY--SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDG-VLERILDISAG-DLRRG 231 (353)
T ss_dssp HT--TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHH-HHHHHHHHTSS-CHHHH
T ss_pred hc--CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCC-CHHHH
Confidence 43 2345666678999999999999 885 899999999999999999887765544433 35788888876 56777
Q ss_pred HHHHHHHHHHHHHcCCC-ccCHHHHHHHHH
Q 047690 539 ANVCNEAALIAARGENS-QVTMEHFEAAID 567 (811)
Q Consensus 539 ~~LvneAal~Aar~~~~-~It~ed~~~Al~ 567 (811)
.++++.++..+.+.+.. .|+.+|+.+++.
T Consensus 232 ~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 232 ITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 77777776665544333 799999988764
No 57
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.70 E-value=2.5e-17 Score=160.49 Aligned_cols=159 Identities=21% Similarity=0.365 Sum_probs=116.5
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----------CCCeEEee
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSIS 391 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----------gvpfi~vs 391 (811)
..+|++++|.++..+.+.+.+. . ..+.++||+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hccccccccchHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 3579999999988777776643 1 235789999999999999999999986 78999999
Q ss_pred chhhhh--hhhcCchhHHHHHHHHHH-hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEE
Q 047690 392 GSDFME--MFVGVGPSRVRNLFQEAR-QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVV 468 (811)
Q Consensus 392 ~s~~~~--~~vG~~~~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIV 468 (811)
+.++.. .+.+.....++.++..+. ...|+||||||+|.+...+... ........+..++ + ..++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~----~~~~~~~~l~~~~---~----~~~~~~ 154 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD----GAMDAGNMLKPAL---A----RGELHC 154 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT----------CCCCHHHHHHHH---H----TTSCCE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc----chHHHHHHHHHhh---c----cCCeEE
Confidence 988762 344445567777877664 4558899999999996543211 1112233344333 2 346778
Q ss_pred EecCCCCc-----ccchhhcCCCCcceeeeccCCCHHHHHHHH
Q 047690 469 IAGTNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIF 506 (811)
Q Consensus 469 IaaTN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL 506 (811)
|++||.++ .+++++++ ||+ .++++.|+.++|.+||
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88888776 68999999 998 6999999999998876
No 58
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.70 E-value=8.6e-17 Score=177.43 Aligned_cols=236 Identities=22% Similarity=0.231 Sum_probs=143.6
Q ss_pred ccccchHhHHHHHHHHHH-hcCchhh-----------------hhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeE
Q 047690 327 DVAGCDEAKQEIMEFVHF-LKNPRKY-----------------EDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL 388 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~-Lk~p~~~-----------------~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi 388 (811)
+|+|++++|+.|...+.. ++..... ..-....+.++||+||||||||++|+++|+.++.||+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 589999999999987731 1111100 0012345678999999999999999999999999999
Q ss_pred Eeechhhh-hhhhcCc-hhHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC-
Q 047690 389 SISGSDFM-EMFVGVG-PSRVRNLFQEAR----QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG- 461 (811)
Q Consensus 389 ~vs~s~~~-~~~vG~~-~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~- 461 (811)
.++|+.+. ..+.|.. ...+..+|..+. ...++||||||+|.+...+..... ..+.......+.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~-~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSI-TRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---------------CHHHHHHHHHHHHCCEE
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCce-ecccchHHHHHHHHHHhhccce
Confidence 99998875 3455554 345566665432 346789999999999765432111 111112336677777777531
Q ss_pred ------------------CCCcEEEEecCCCC-----------------------------------------cccchhh
Q 047690 462 ------------------TTAGVVVIAGTNRP-----------------------------------------DILDKAL 482 (811)
Q Consensus 462 ------------------~~~~VIVIaaTN~p-----------------------------------------d~LDpAL 482 (811)
...++++|++||.. ..+.|+|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 12456777777621 1245666
Q ss_pred cCCCCcceeeeccCCCHHHHHHHHHH----HHh----h-----ccCCCCCchhhhHHHhhCC--CCcHHHHHHHHHHHHH
Q 047690 483 LRPGRFDRQITIDKPDIKGRDQIFQV----YLK----K-----IKLDHEPSYYSQRLAALTP--GFAGADIANVCNEAAL 547 (811)
Q Consensus 483 lRpGRFdr~I~v~~Pd~~eR~eIL~~----~l~----~-----~~l~~~~d~~l~~LA~~t~--GfSgaDL~~LvneAal 547 (811)
++ ||+..+.++.++.++...|+.. +++ . ..+..+ +..++.|+.... ....++|.++++.+..
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~l~~~~~~~~~~~R~L~~~le~~~~ 337 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFE-EEAIKEIAQLALERKTGARGLRAIIEDFCL 337 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEEC-HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEEC-HHHHHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 66 8888899999999999998862 221 1 111112 222455665532 3467899999988877
Q ss_pred HHHHcCC------CccCHHHHHHHH
Q 047690 548 IAARGEN------SQVTMEHFEAAI 566 (811)
Q Consensus 548 ~Aar~~~------~~It~ed~~~Al 566 (811)
.+..+.. ..|+.+++..+.
T Consensus 338 ~~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 338 DIMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHHTGGGGTTSEEEECHHHHTTSS
T ss_pred HHHhhccCCCCCEEEEeHHHhcCCC
Confidence 6554321 247877776654
No 59
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.69 E-value=1.1e-16 Score=182.53 Aligned_cols=206 Identities=22% Similarity=0.323 Sum_probs=142.6
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----------CCCeEEee
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSIS 391 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----------gvpfi~vs 391 (811)
.-+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +.+|+.++
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred cCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 45799999999998888877652 224579999999999999999999986 78899999
Q ss_pred chhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEec
Q 047690 392 GSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAG 471 (811)
Q Consensus 392 ~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaa 471 (811)
++ ..|.|..+.+++.+|..+....|+||||| +. ....+.|+..|+ ...+.||++
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~--------------~~a~~~L~~~L~----~g~v~vI~a 297 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA--------------IDASNILKPSLA----RGELQCIGA 297 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT----SSSCEEEEE
T ss_pred CC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc--------------hhHHHHHHHhhc----CCCEEEEec
Confidence 88 66788888899999999998889999999 10 012233333333 457899999
Q ss_pred CCCCc-----ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhc----cCCCCCchhhhHHHhhCC-----CCcHHH
Q 047690 472 TNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKI----KLDHEPSYYSQRLAALTP-----GFAGAD 537 (811)
Q Consensus 472 TN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~----~l~~~~d~~l~~LA~~t~-----GfSgaD 537 (811)
||.++ .+|++++| ||. .|.|+.|+.+++.+||+.++... +.... +..+..++..+. .+.+..
T Consensus 298 t~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~-~~al~~l~~~s~~~~~~~~lp~~ 373 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSIT-DDAIEAAVKLSDRYISDRFLPDK 373 (468)
T ss_dssp CCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCC-HHHHHHHHHHHHHSSCCSCTTHH
T ss_pred CCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhccCcCCcH
Confidence 99887 68999999 997 59999999999999999887663 22222 223455555433 344567
Q ss_pred HHHHHHHHHHHHHHcC-CCccCHHHHHHHHHHH
Q 047690 538 IANVCNEAALIAARGE-NSQVTMEHFEAAIDRV 569 (811)
Q Consensus 538 L~~LvneAal~Aar~~-~~~It~ed~~~Al~rv 569 (811)
...++.+|+..+..+. .......+++..++++
T Consensus 374 ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 374 AIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 8888888776555443 3344556666665544
No 60
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.68 E-value=2.9e-16 Score=167.33 Aligned_cols=203 Identities=22% Similarity=0.283 Sum_probs=136.6
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh----
Q 047690 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM---- 398 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~---- 398 (811)
++++|++++++.+...+......-.+ ..++...+||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~---~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSC---TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCC---CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 46889999999999888753110000 01223469999999999999999999987 668999999876432
Q ss_pred -hhcCch-----hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC---------CC
Q 047690 399 -FVGVGP-----SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG---------TT 463 (811)
Q Consensus 399 -~vG~~~-----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~---------~~ 463 (811)
+.|... .....+.........+||||||+|.+. . .+.+.|+..|+... .-
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~------------~---~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH------------P---DVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC------------H---HHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC------------H---HHHHHHHHHHhcCEEEcCCCCEEEC
Confidence 222110 000122223334445899999999982 2 24445555554321 11
Q ss_pred CcEEEEecCCC--------------------------CcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhcc---
Q 047690 464 AGVVVIAGTNR--------------------------PDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIK--- 514 (811)
Q Consensus 464 ~~VIVIaaTN~--------------------------pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~--- 514 (811)
.++++|+|||. ...++++|++ ||+..+.+.+|+.+++..|++.++....
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36789999998 4568889998 9999999999999999999999886531
Q ss_pred ------CCCCCchhhhHHHhhCC--CCcHHHHHHHHHHHHHHH
Q 047690 515 ------LDHEPSYYSQRLAALTP--GFAGADIANVCNEAALIA 549 (811)
Q Consensus 515 ------l~~~~d~~l~~LA~~t~--GfSgaDL~~LvneAal~A 549 (811)
...+ +..++.++.... ....++|.++++.+...+
T Consensus 237 ~~~~~~~~~~-~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~ 278 (311)
T 4fcw_A 237 AEKRISLELT-EAAKDFLAERGYDPVFGARPLRRVIQRELETP 278 (311)
T ss_dssp HTTTCEEEEC-HHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHH
T ss_pred HhCCcEEEeC-HHHHHHHHHhCCCccCCchhHHHHHHHHHHHH
Confidence 1111 223456666554 567889999988876544
No 61
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.67 E-value=3.9e-16 Score=166.02 Aligned_cols=201 Identities=22% Similarity=0.217 Sum_probs=143.9
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-----CCCeEEeechhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSISGSDF 395 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs~s~~ 395 (811)
.+.+|++++|++++++.|.+.+.. ...|. +||+||||||||++|+++++++ +.+++.+++++.
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 79 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVER-----------KNIPH-LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTT-----------TCCCC-EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhC-----------CCCCe-EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc
Confidence 346799999999999888776531 12334 9999999999999999999986 456888888764
Q ss_pred hhhhhcCchhHHHHHHHHHH------hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEE
Q 047690 396 MEMFVGVGPSRVRNLFQEAR------QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVI 469 (811)
Q Consensus 396 ~~~~vG~~~~~vr~lF~~A~------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVI 469 (811)
.. ...++..+.... ...++||+|||+|.+.. ...+.|+..++. ...++++|
T Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~L~~~le~--~~~~~~~i 136 (319)
T 2chq_A 80 RG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------DAQAALRRTMEM--YSKSCRFI 136 (319)
T ss_dssp TC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH---------------HHHHTTGGGTSS--SSSSEEEE
T ss_pred cC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH---------------HHHHHHHHHHHh--cCCCCeEE
Confidence 32 122222222221 13478999999999832 234556666654 34568888
Q ss_pred ecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHH
Q 047690 470 AGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIA 549 (811)
Q Consensus 470 aaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~A 549 (811)
++||.+..+++++.+ |+. .+.+++|+.+++.+++..+++..+...+.+ .++.++..+.| ..+.+.++++.++.
T Consensus 137 ~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~l~~l~~~~~G-~~r~~~~~l~~~~~-- 209 (319)
T 2chq_A 137 LSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITED-GLEALIYISGG-DFRKAINALQGAAA-- 209 (319)
T ss_dssp EEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHH-HHHHHHHTTTT-CHHHHHHHHHHHHH--
T ss_pred EEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHH--
Confidence 889999999999999 885 899999999999999999998776654443 35677777755 45555566554432
Q ss_pred HHcCCCccCHHHHHHHH
Q 047690 550 ARGENSQVTMEHFEAAI 566 (811)
Q Consensus 550 ar~~~~~It~ed~~~Al 566 (811)
....|+.+++..++
T Consensus 210 ---~~~~i~~~~v~~~~ 223 (319)
T 2chq_A 210 ---IGEVVDADTIYQIT 223 (319)
T ss_dssp ---SSSCBCHHHHHHHT
T ss_pred ---cCCCCCHHHHHHHH
Confidence 13569998887765
No 62
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.67 E-value=2e-15 Score=164.51 Aligned_cols=202 Identities=21% Similarity=0.319 Sum_probs=149.6
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC---------------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP--------------- 386 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp--------------- 386 (811)
+.+|++++|.+++++.|...+.. .+.+..+||+||||||||++|+++|+.++..
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH
T ss_pred CCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 34799999999999999887752 2346678999999999999999999987542
Q ss_pred ---------eEEeechhhhhhhhcCchhHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHH
Q 047690 387 ---------FLSISGSDFMEMFVGVGPSRVRNLFQEARQ----CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQL 453 (811)
Q Consensus 387 ---------fi~vs~s~~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqL 453 (811)
++.+++.. ..+...++.++..+.. ..+.||+|||+|.+. ....+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~---------------~~~~~~L 139 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS---------------RHSFNAL 139 (373)
T ss_dssp HHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC---------------HHHHHHH
T ss_pred HHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc---------------HHHHHHH
Confidence 22222211 1123456777776643 236899999999982 1245666
Q ss_pred HHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCC
Q 047690 454 LVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGF 533 (811)
Q Consensus 454 L~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~Gf 533 (811)
+..++. ...++++|.+|+.+..+++.+++ |+ ..+.++.|+.++..++++.+++..+...+.+. +..++..+.|
T Consensus 140 l~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a-~~~l~~~~~G- 212 (373)
T 1jr3_A 140 LKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRA-LQLLARAAEG- 212 (373)
T ss_dssp HHHHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHH-HHHHHHHSSS-
T ss_pred HHHHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHCCC-
Confidence 666665 34578888888888899999998 77 68999999999999999999987665544333 5678888866
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 534 AGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 534 SgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
+.+++.++++.+...+ ...|+.+++..++
T Consensus 213 ~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 213 SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 7888888888775432 3569999988775
No 63
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=2.5e-15 Score=160.12 Aligned_cols=201 Identities=16% Similarity=0.166 Sum_probs=145.9
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-----CCCeEEeechhhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-----GVPFLSISGSDFM 396 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs~s~~~ 396 (811)
+.+|++++|++++++.|.+.+.. .+.|. +||+||||||||++|+++++++ +.+++.+++++..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR 84 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC
T ss_pred CCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc
Confidence 45799999999999998887651 23455 9999999999999999999985 4567888776531
Q ss_pred hhhhcCchhHHHHHHHHHH-------hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEE
Q 047690 397 EMFVGVGPSRVRNLFQEAR-------QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVI 469 (811)
Q Consensus 397 ~~~vG~~~~~vr~lF~~A~-------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVI 469 (811)
+...+++++.... ...++||+|||+|.+.. ...+.|+..++. ...++++|
T Consensus 85 ------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------------~~~~~L~~~le~--~~~~~~~i 141 (323)
T 1sxj_B 85 ------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA---------------GAQQALRRTMEL--YSNSTRFA 141 (323)
T ss_dssp ------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---------------HHHHTTHHHHHH--TTTTEEEE
T ss_pred ------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH---------------HHHHHHHHHHhc--cCCCceEE
Confidence 2345666666554 22378999999999832 123444544544 33567778
Q ss_pred ecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHH
Q 047690 470 AGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIA 549 (811)
Q Consensus 470 aaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~A 549 (811)
.+||.++.+++++.+ |+. .+.++.|+.+++.++++.+++..+...+.+ .+..++..+.| ..+.+.++++.+...
T Consensus 142 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~a~~~l~~~~~~- 215 (323)
T 1sxj_B 142 FACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTND-GLEAIIFTAEG-DMRQAINNLQSTVAG- 215 (323)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHTT-CHHHHHHHHHHHHHH-
T ss_pred EEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHhc-
Confidence 888999999999998 775 899999999999999999987765554433 34678887765 455666666554422
Q ss_pred HHcCCCccCHHHHHHHHH
Q 047690 550 ARGENSQVTMEHFEAAID 567 (811)
Q Consensus 550 ar~~~~~It~ed~~~Al~ 567 (811)
...|+.+++.+++.
T Consensus 216 ----~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 216 ----HGLVNADNVFKIVD 229 (323)
T ss_dssp ----HSSBCHHHHHHHHT
T ss_pred ----CCCcCHHHHHHHHC
Confidence 14699999888763
No 64
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.66 E-value=2.6e-15 Score=164.10 Aligned_cols=224 Identities=13% Similarity=0.089 Sum_probs=159.1
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCC--cEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeechhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPK--GALLVGPPGTGKTLLAKATAGES----GVPFLSISGSDF 395 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pk--GvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~s~~ 395 (811)
+..+++++|.++..+.|.+.+..... ...+. .++|+||||||||++++++++++ +.+++.++|...
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLR--------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHH--------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 34568999999999999888764211 12234 79999999999999999999988 678999997653
Q ss_pred hh------hh----------hcCchhHHHH-HHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhh
Q 047690 396 ME------MF----------VGVGPSRVRN-LFQEARQ-CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEM 457 (811)
Q Consensus 396 ~~------~~----------vG~~~~~vr~-lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~em 457 (811)
.. .. .+.....+.. +...... ..|.||+|||+|.+. ...++.|+..+
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~---------------~~~~~~L~~~~ 149 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA---------------PDILSTFIRLG 149 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC---------------HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc---------------hHHHHHHHHHH
Confidence 21 10 1112222222 2222222 458899999999981 23455666665
Q ss_pred hcCCC--CCcEEEEecCCCC---cccchhhcCCCCcce-eeeccCCCHHHHHHHHHHHHhhccCC-CCCchhhhHHHhhC
Q 047690 458 DGFGT--TAGVVVIAGTNRP---DILDKALLRPGRFDR-QITIDKPDIKGRDQIFQVYLKKIKLD-HEPSYYSQRLAALT 530 (811)
Q Consensus 458 Dg~~~--~~~VIVIaaTN~p---d~LDpALlRpGRFdr-~I~v~~Pd~~eR~eIL~~~l~~~~l~-~~~d~~l~~LA~~t 530 (811)
+.... ..++.||++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+...... .-.+..++.++..+
T Consensus 150 ~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 150 QEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADIT 227 (389)
T ss_dssp TCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHH
T ss_pred HhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 54322 2478888888887 667888887 8874 79999999999999999988752211 11223357778877
Q ss_pred C--------CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 047690 531 P--------GFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVI 570 (811)
Q Consensus 531 ~--------GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rvi 570 (811)
. +-..+.+.++|+.|...|..++...|+.+|+..++..+.
T Consensus 228 ~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 228 GAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp SBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred hhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 3 236788999999999888888888999999999998764
No 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.65 E-value=6.1e-16 Score=188.45 Aligned_cols=205 Identities=22% Similarity=0.311 Sum_probs=136.9
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----------CCCeEEee
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSIS 391 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----------gvpfi~vs 391 (811)
.-+|++++|.++.++.+.+++. . ..+.++||+||||||||++|+++|+.+ +.+++.++
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~---~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILL---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHH---C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCcccCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 4589999999987777777653 1 234679999999999999999999987 88999999
Q ss_pred chhhh--hhhhcCchhHHHHHHHHHHhc-CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEE
Q 047690 392 GSDFM--EMFVGVGPSRVRNLFQEARQC-APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVV 468 (811)
Q Consensus 392 ~s~~~--~~~vG~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIV 468 (811)
++.+. ..+.|..+.+++.+|..+... .|+||||||+|.+...+... +.......+..++ + ...+.+
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~----g~~~~~~~L~~~l---~----~~~i~~ 302 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE----GAVDAGNMLKPAL---A----RGELRL 302 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------HHHH---H----TTCCCE
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc----chHHHHHHHHHHH---h----CCCeEE
Confidence 99887 467788888999999999875 68999999999996543211 1122223333333 2 346788
Q ss_pred EecCCCCc----ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCC---chhhhHHHhh-----CCCCcHH
Q 047690 469 IAGTNRPD----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEP---SYYSQRLAAL-----TPGFAGA 536 (811)
Q Consensus 469 IaaTN~pd----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~---d~~l~~LA~~-----t~GfSga 536 (811)
|++||.++ .+|++|.| ||+. |.|+.|+.+++.+||+.++......... +..+..++.. +..|.+.
T Consensus 303 I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ 379 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPD 379 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHH
T ss_pred EEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChH
Confidence 99998765 47999999 9985 9999999999999999887654211111 2223444443 4567788
Q ss_pred HHHHHHHHHHHHHHHc
Q 047690 537 DIANVCNEAALIAARG 552 (811)
Q Consensus 537 DL~~LvneAal~Aar~ 552 (811)
....++.+|+..+..+
T Consensus 380 kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 380 KAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8889998887766543
No 66
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.1e-16 Score=169.33 Aligned_cols=160 Identities=12% Similarity=0.090 Sum_probs=117.2
Q ss_pred cccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----------CCCeEEeechhhhh
Q 047690 328 VAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSISGSDFME 397 (811)
Q Consensus 328 V~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----------gvpfi~vs~s~~~~ 397 (811)
+.|.++..+.+..++.. .+....|.+++|+||||||||++++++++++ .+.+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~--------~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYD--------SLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHH--------HhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 56666666666655543 1223457899999999999999999999987 35688999865432
Q ss_pred ----------hhhc------CchhHHHHHHHHH--HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc
Q 047690 398 ----------MFVG------VGPSRVRNLFQEA--RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG 459 (811)
Q Consensus 398 ----------~~vG------~~~~~vr~lF~~A--~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg 459 (811)
.+.| .....++.+|... ....++||||||+|.|. .+..+..|+.....
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--------------~q~~L~~l~~~~~~ 159 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--------------SEKILQYFEKWISS 159 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--------------CTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--------------cchHHHHHHhcccc
Confidence 2222 2455678888875 34568999999999994 12466666654432
Q ss_pred CCCCCcEEEEecCCCCcc----cchhhcCCCCcc-eeeeccCCCHHHHHHHHHHHHhhc
Q 047690 460 FGTTAGVVVIAGTNRPDI----LDKALLRPGRFD-RQITIDKPDIKGRDQIFQVYLKKI 513 (811)
Q Consensus 460 ~~~~~~VIVIaaTN~pd~----LDpALlRpGRFd-r~I~v~~Pd~~eR~eIL~~~l~~~ 513 (811)
...+++||+.+|..+. |++++++ ||. +.|.|++++.++..+|++..+...
T Consensus 160 --~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 160 --KNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp --SSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred --cCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 4567899999998764 4566677 886 689999999999999999999874
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.64 E-value=1.3e-15 Score=183.21 Aligned_cols=198 Identities=21% Similarity=0.274 Sum_probs=136.0
Q ss_pred ccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCC-cEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhhh
Q 047690 325 FRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPK-GALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMFV 400 (811)
Q Consensus 325 f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pk-GvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~v 400 (811)
.++|+|++++++.+.+.+........ ....|. ++||+||||||||++|+++|..+ +.||+.++|+++.+.+.
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 46799999999999998875432111 011233 59999999999999999999987 78999999999987765
Q ss_pred cCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC---------CCCcEEEEec
Q 047690 401 GVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG---------TTAGVVVIAG 471 (811)
Q Consensus 401 G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~---------~~~~VIVIaa 471 (811)
.. ...++...+...++||||||||.+ +. .+++.|+..|+.-. ...++++|+|
T Consensus 566 ~~----~~~l~~~~~~~~~~vl~lDEi~~~------------~~---~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 566 TS----GGQLTEKVRRKPYSVVLLDAIEKA------------HP---DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp CC-------CHHHHHHCSSSEEEEECGGGS------------CH---HHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred cc----cchhhHHHHhCCCeEEEEeCcccc------------CH---HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 54 222334445556789999999987 22 34455555555421 2246799999
Q ss_pred CCCCcc------------cchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhcc-------CCCCC-chhhhHHHh--h
Q 047690 472 TNRPDI------------LDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIK-------LDHEP-SYYSQRLAA--L 529 (811)
Q Consensus 472 TN~pd~------------LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~-------l~~~~-d~~l~~LA~--~ 529 (811)
||.+.. ++|+|++ ||+..|.|++|+.+++.+|++.++.... ..... +..++.++. .
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 704 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGV 704 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGC
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCC
Confidence 996543 7888888 9999999999999999999999886531 11111 222455554 3
Q ss_pred CCCCcHHHHHHHHHHHHH
Q 047690 530 TPGFAGADIANVCNEAAL 547 (811)
Q Consensus 530 t~GfSgaDL~~LvneAal 547 (811)
...+..++|.++++.+..
T Consensus 705 ~~~~~~R~L~~~i~~~v~ 722 (758)
T 3pxi_A 705 DLEYGARPLRRAIQKHVE 722 (758)
T ss_dssp CTTTTTTTHHHHHHHHTH
T ss_pred CCCCCChHHHHHHHHHHH
Confidence 344566778887776543
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.64 E-value=1.4e-15 Score=182.76 Aligned_cols=190 Identities=23% Similarity=0.310 Sum_probs=135.4
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----------CCCeEEee
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSIS 391 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----------gvpfi~vs 391 (811)
.-+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred hCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 45799999999999988877641 234679999999999999999999986 88899888
Q ss_pred chhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEec
Q 047690 392 GSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAG 471 (811)
Q Consensus 392 ~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaa 471 (811)
+ ...|.|..+.+++.+|..+....|+||||| +. ....+.|+..|+ ...+.+|++
T Consensus 244 ~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~--------------~~~~~~L~~~l~----~~~v~~I~a 297 (758)
T 3pxi_A 244 M---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA--------------IDASNILKPSLA----RGELQCIGA 297 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT----SSSCEEEEE
T ss_pred c---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc--------------hhHHHHHHHHHh----cCCEEEEeC
Confidence 8 456788889999999999999999999999 10 012233443333 457899999
Q ss_pred CCCCc-----ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCC---chhhhHHHhh-----CCCCcHHHH
Q 047690 472 TNRPD-----ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEP---SYYSQRLAAL-----TPGFAGADI 538 (811)
Q Consensus 472 TN~pd-----~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~---d~~l~~LA~~-----t~GfSgaDL 538 (811)
||..+ .+|++++| || ..|.|+.|+.+++.+||+.++........+ +..+..++.. +.++.+.+.
T Consensus 298 t~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~a 374 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKA 374 (758)
T ss_dssp CCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHH
T ss_pred CChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHH
Confidence 99888 69999999 99 569999999999999999877663221111 2223444433 456778888
Q ss_pred HHHHHHHHHHHHHc
Q 047690 539 ANVCNEAALIAARG 552 (811)
Q Consensus 539 ~~LvneAal~Aar~ 552 (811)
..++.+|+..+..+
T Consensus 375 i~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 375 IDLIDEAGSKVRLR 388 (758)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 88998887665544
No 69
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=7e-15 Score=156.87 Aligned_cols=201 Identities=21% Similarity=0.251 Sum_probs=141.7
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcC-----CCeEEeechhh
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESG-----VPFLSISGSDF 395 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~g-----vpfi~vs~s~~ 395 (811)
.+.+|++++|++++++.|...+.. .+.| ++||+||||||||++|+++++.+. .+++.+++++.
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKT-----------GSMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHH-----------TCCC-EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHc-----------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 356899999999999999887752 1223 499999999999999999999863 35788887764
Q ss_pred hhhhhcCchhHHHHHHHHHHh------cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEE
Q 047690 396 MEMFVGVGPSRVRNLFQEARQ------CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVI 469 (811)
Q Consensus 396 ~~~~vG~~~~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVI 469 (811)
... ..++..+..... ..++||+|||+|.+.. ...+.|+..++. ...++++|
T Consensus 88 ~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~L~~~le~--~~~~~~~i 144 (327)
T 1iqp_A 88 RGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---------------DAQQALRRTMEM--FSSNVRFI 144 (327)
T ss_dssp HHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH---------------HHHHHHHHHHHH--TTTTEEEE
T ss_pred Cch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH---------------HHHHHHHHHHHh--cCCCCeEE
Confidence 321 122222222111 3478999999999821 234455555554 24567788
Q ss_pred ecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHH
Q 047690 470 AGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIA 549 (811)
Q Consensus 470 aaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~A 549 (811)
.+||.++.+++++.+ |+. .+.+++|+.++..++++.++...+...+.+ .++.++..+.| +.+.+.++++.+..
T Consensus 145 ~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~~~~~l~~~~~-- 217 (327)
T 1iqp_A 145 LSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEE-GLQAILYIAEG-DMRRAINILQAAAA-- 217 (327)
T ss_dssp EEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHH-HHHHHHHHHTT-CHHHHHHHHHHHHT--
T ss_pred EEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHCCC-CHHHHHHHHHHHHh--
Confidence 889999999999998 886 789999999999999999988766544433 35677777765 56666666664432
Q ss_pred HHcCCCccCHHHHHHHH
Q 047690 550 ARGENSQVTMEHFEAAI 566 (811)
Q Consensus 550 ar~~~~~It~ed~~~Al 566 (811)
....|+.+++..++
T Consensus 218 ---~~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 218 ---LDKKITDENVFMVA 231 (327)
T ss_dssp ---TCSEECHHHHHHHT
T ss_pred ---cCCCCCHHHHHHHH
Confidence 23468888887765
No 70
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.62 E-value=3.7e-15 Score=156.15 Aligned_cols=209 Identities=20% Similarity=0.252 Sum_probs=122.7
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcC---CCeEEeechhhhhh-
Q 047690 323 VYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESG---VPFLSISGSDFMEM- 398 (811)
Q Consensus 323 v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~g---vpfi~vs~s~~~~~- 398 (811)
.+|++++|.+++++.+.+.+..+.. .+.++||+||||||||++|++++..+. .||+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 4799999999999999888775422 346899999999999999999999874 79999999886432
Q ss_pred ----hhcCchhH-------HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh----c--CC
Q 047690 399 ----FVGVGPSR-------VRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD----G--FG 461 (811)
Q Consensus 399 ----~vG~~~~~-------vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD----g--~~ 461 (811)
..|..... ....|..+ .+++|||||||.+. ...+..+.+++..-. + ..
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~------------~~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP------------MMVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC------------HHHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC------------HHHHHHHHHHHHhCCeecCCCccc
Confidence 11211100 01123222 35799999999983 222333444443210 0 01
Q ss_pred CCCcEEEEecCCCC-c------ccchhhcCCCCcceeeeccCCCHHHHH----HHHHHHHhh----ccCCC--CC-chhh
Q 047690 462 TTAGVVVIAGTNRP-D------ILDKALLRPGRFDRQITIDKPDIKGRD----QIFQVYLKK----IKLDH--EP-SYYS 523 (811)
Q Consensus 462 ~~~~VIVIaaTN~p-d------~LDpALlRpGRFdr~I~v~~Pd~~eR~----eIL~~~l~~----~~l~~--~~-d~~l 523 (811)
...++.||++||.+ + .++++|.+ ||+ .+.+..|+..+|. .+++.+++. .+... .. +..+
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~-~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~ 214 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLD--ALA-FDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERAR 214 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHC-SEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHH
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhc-CcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHH
Confidence 12457889999974 2 35677777 785 3556666665553 344444433 33221 11 2223
Q ss_pred hHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 047690 524 QRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHF 562 (811)
Q Consensus 524 ~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~ 562 (811)
+.+....-....++|.++++.+...+ ....|+.+|+
T Consensus 215 ~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 215 ETLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 44555443346789999999877655 3445666555
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.62 E-value=1.6e-15 Score=182.06 Aligned_cols=195 Identities=23% Similarity=0.316 Sum_probs=136.8
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhcCCC---CC-CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh---
Q 047690 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAK---IP-KGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM--- 398 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~---~p-kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~--- 398 (811)
++|+|++++++.+...+.... .|.. .| .++||+||||||||++|+++|..++.+|+.++|+++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~-------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH-------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 468999999999988776432 1221 13 369999999999999999999999999999999998764
Q ss_pred ---------hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCC-------
Q 047690 399 ---------FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGT------- 462 (811)
Q Consensus 399 ---------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~------- 462 (811)
|+|..+. ..+....+...++||||||||.+. . .+++.|+..||.-.-
T Consensus 531 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~------------~---~~~~~Ll~~le~~~~~~~~g~~ 593 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH------------P---DVFNILLQVMDNGTLTDNNGRK 593 (758)
T ss_dssp SSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC------------H---HHHHHHHHHHHHSEEEETTTEE
T ss_pred hhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC------------H---HHHHHHHHHhcCcEEEcCCCCE
Confidence 2222111 223444555667999999999872 2 355666666653210
Q ss_pred --CCcEEEEecCCCCc-------------------------ccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhcc-
Q 047690 463 --TAGVVVIAGTNRPD-------------------------ILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIK- 514 (811)
Q Consensus 463 --~~~VIVIaaTN~pd-------------------------~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~- 514 (811)
-.+++||+|||.+. .++|+|++ |||..|.|++|+.+++..|++.++....
T Consensus 594 ~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~ 671 (758)
T 1r6b_X 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQV 671 (758)
T ss_dssp EECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHH
Confidence 14688999999754 67888998 9999999999999999999999887431
Q ss_pred --------CCCCCchhhhHHHhh--CCCCcHHHHHHHHHHHHH
Q 047690 515 --------LDHEPSYYSQRLAAL--TPGFAGADIANVCNEAAL 547 (811)
Q Consensus 515 --------l~~~~d~~l~~LA~~--t~GfSgaDL~~LvneAal 547 (811)
+..+ +..++.++.. ...+..++|.++++.+..
T Consensus 672 ~~~~~~~~~~~~-~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 672 QLDQKGVSLEVS-QEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp HHHHTTEEEEEC-HHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred HHHHCCcEEEeC-HHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 1111 1223445543 234556777777776654
No 72
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.61 E-value=8e-16 Score=149.91 Aligned_cols=151 Identities=25% Similarity=0.406 Sum_probs=109.2
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----------CCCeEEeec
Q 047690 323 VYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----------GVPFLSISG 392 (811)
Q Consensus 323 v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----------gvpfi~vs~ 392 (811)
.+|++++|.++..+.+.+.+. . ..+.++||+||||||||++|++++.++ +.+++.+++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILS---R---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred cccchhhcchHHHHHHHHHHh---C---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 479999999987777766543 2 235689999999999999999999986 788999988
Q ss_pred hhhhhh--hhcCchhHHHHHHHHHHhc-CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEE
Q 047690 393 SDFMEM--FVGVGPSRVRNLFQEARQC-APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVI 469 (811)
Q Consensus 393 s~~~~~--~vG~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVI 469 (811)
..+... +.+.....++.++..+... .|++|||||+|.+...+... ....+....+..++ + ...+++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~~l~~~~---~----~~~~~ii 156 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA---EGALDAGNILKPML---A----RGELRCI 156 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC---TTSCCTHHHHHHHH---H----TTCSCEE
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc---ccchHHHHHHHHHH---h----cCCeeEE
Confidence 877532 3444455677788777665 68899999999996443211 11122223333333 2 3567889
Q ss_pred ecCCCCc-----ccchhhcCCCCcceeeeccCCC
Q 047690 470 AGTNRPD-----ILDKALLRPGRFDRQITIDKPD 498 (811)
Q Consensus 470 aaTN~pd-----~LDpALlRpGRFdr~I~v~~Pd 498 (811)
++||.++ .+|+++++ ||+ .+.++.|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 9999775 58999999 998 49999886
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.60 E-value=7.2e-16 Score=177.03 Aligned_cols=212 Identities=16% Similarity=0.126 Sum_probs=134.0
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcC--CCeEEeechh-hhhhhhcC
Q 047690 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESG--VPFLSISGSD-FMEMFVGV 402 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~g--vpfi~vs~s~-~~~~~vG~ 402 (811)
..|+|++++++.+...+.. ..++||+||||||||++|+++|..++ .+|..+++.- -.+...|.
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 4688999998877655431 34799999999999999999999884 4666666531 11122221
Q ss_pred -chhH--HHHHHHHHHhc---CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC--------CCCcEEE
Q 047690 403 -GPSR--VRNLFQEARQC---APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG--------TTAGVVV 468 (811)
Q Consensus 403 -~~~~--vr~lF~~A~~~---aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~--------~~~~VIV 468 (811)
.... -...|..+... .++|||||||+.+. ..+.+.|+..|+... .....++
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~---------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~i 152 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG---------------PAILNTLLTAINERQFRNGAHVEKIPMRLL 152 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGCC---------------HHHHHHHHHHHHSSEEECSSSEEECCCCEE
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc---------------HHHHHHHHHHHHHHhccCCCCcCCcchhhh
Confidence 1000 12223222221 46899999997752 234556666665311 1112245
Q ss_pred EecCCCCcc---cchhhcCCCCcceeeeccCCCH-HHHHHHHHHHHhhc-----------------------cCCCCCch
Q 047690 469 IAGTNRPDI---LDKALLRPGRFDRQITIDKPDI-KGRDQIFQVYLKKI-----------------------KLDHEPSY 521 (811)
Q Consensus 469 IaaTN~pd~---LDpALlRpGRFdr~I~v~~Pd~-~eR~eIL~~~l~~~-----------------------~l~~~~d~ 521 (811)
|+|||.+.. +.+++++ ||...+.++.|+. +++..|++.+.... ....+ +.
T Consensus 153 I~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~-d~ 229 (500)
T 3nbx_X 153 VAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLP-DH 229 (500)
T ss_dssp EEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCC-HH
T ss_pred hhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCc-hH
Confidence 777775322 3458999 9999999999987 77888887654211 01111 11
Q ss_pred hhhHHHhh---------CCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 047690 522 YSQRLAAL---------TPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVI 570 (811)
Q Consensus 522 ~l~~LA~~---------t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rvi 570 (811)
..+.++.. ..|.|++.+..+++.|...|..+++..|+.+|+. ++..++
T Consensus 230 v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL 286 (500)
T 3nbx_X 230 VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCL 286 (500)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTS
T ss_pred HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhh
Confidence 12233322 3588999999999999999999999999999998 544443
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.56 E-value=4.9e-15 Score=159.73 Aligned_cols=204 Identities=20% Similarity=0.291 Sum_probs=128.4
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh----
Q 047690 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM---- 398 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~---- 398 (811)
++++|.+++.+.+.+.+..+. ..+.++||+||||||||++|++++..+ +.||+.++|+.+.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 468999999999998887543 335689999999999999999999965 689999999876432
Q ss_pred -hhcCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC---------
Q 047690 399 -FVGVGP-------SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG--------- 461 (811)
Q Consensus 399 -~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~--------- 461 (811)
..|... ......|..|. .++|||||||.+.. .. ...|+..++...
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~------------~~---q~~Ll~~l~~~~~~~~g~~~~ 133 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP------------LM---QVRLLRAIQEREVQRVGSNQT 133 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH------------HH---HHHHHHHHHSSBCCBTTBCCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH------------HH---HHHHHHHHhcCEeeecCCccc
Confidence 122110 01223455553 47999999999832 22 334444444321
Q ss_pred CCCcEEEEecCCCC-------cccchhhcCCCCcceeeeccCCCHHHHHH----HHHHHHhhc----cCC-CCC-chhhh
Q 047690 462 TTAGVVVIAGTNRP-------DILDKALLRPGRFDRQITIDKPDIKGRDQ----IFQVYLKKI----KLD-HEP-SYYSQ 524 (811)
Q Consensus 462 ~~~~VIVIaaTN~p-------d~LDpALlRpGRFdr~I~v~~Pd~~eR~e----IL~~~l~~~----~l~-~~~-d~~l~ 524 (811)
...++.||++||.+ ..+++.|.. ||. .+.+..|+..+|.+ +++.++... +.. ... +..++
T Consensus 134 ~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~ 210 (304)
T 1ojl_A 134 ISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMD 210 (304)
T ss_dssp CBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHH
T ss_pred ccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHH
Confidence 12458899999975 123444554 554 56667777666544 555555432 211 111 22345
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 047690 525 RLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFE 563 (811)
Q Consensus 525 ~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~ 563 (811)
.+....-..+.++|.++++.|+..+ ....|+.+|+.
T Consensus 211 ~L~~~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 211 LLIHYDWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp HHHHCCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 5666653346788899888877654 34567766664
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=4.9e-14 Score=153.29 Aligned_cols=205 Identities=23% Similarity=0.277 Sum_probs=137.6
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCC-----CeEEeechhhh
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGV-----PFLSISGSDFM 396 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gv-----pfi~vs~s~~~ 396 (811)
+.+|++++|++++++.|...+. ..++|. +||+||||||||++|+++|+.+.. .++.+++++..
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~-----------~g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 88 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVD-----------EGKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR 88 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHH-----------TTCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC
T ss_pred CCcHHHhcCcHHHHHHHHHHHh-----------cCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc
Confidence 4579999999999998888775 124455 999999999999999999998632 35666665421
Q ss_pred hhhhcCchhHHHHHHHHHHh------cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEe
Q 047690 397 EMFVGVGPSRVRNLFQEARQ------CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIA 470 (811)
Q Consensus 397 ~~~vG~~~~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIa 470 (811)
+...+++.+..... ..+.|++|||+|.+.. ...+.|+..++.. ...+.+|.
T Consensus 89 ------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~---------------~~~~~L~~~le~~--~~~~~~il 145 (340)
T 1sxj_C 89 ------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN---------------AAQNALRRVIERY--TKNTRFCV 145 (340)
T ss_dssp ------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH---------------HHHHHHHHHHHHT--TTTEEEEE
T ss_pred ------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH---------------HHHHHHHHHHhcC--CCCeEEEE
Confidence 22344544443321 1368999999999832 1234455555543 34566777
Q ss_pred cCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 047690 471 GTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAA 550 (811)
Q Consensus 471 aTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aa 550 (811)
+||.+..+.+++++ |+. .+.+..++.++..+++...++..++..+.+ .++.++..+.| ..+.+.++++.++..+.
T Consensus 146 ~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~-~~~~i~~~s~G-~~r~~~~~l~~~~~~~~ 220 (340)
T 1sxj_C 146 LANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPN-AEKALIELSNG-DMRRVLNVLQSCKATLD 220 (340)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHH-HHHHHHHHHTT-CHHHHHHHTTTTTTTTC
T ss_pred EecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHHhcC
Confidence 78999999999999 885 788999999999999998886655444333 24667776654 34444444443332221
Q ss_pred HcCCCccCHHHHHHHH
Q 047690 551 RGENSQVTMEHFEAAI 566 (811)
Q Consensus 551 r~~~~~It~ed~~~Al 566 (811)
..+...|+.+++..++
T Consensus 221 ~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 221 NPDEDEISDDVIYECC 236 (340)
T ss_dssp SSSCCCBCHHHHHHHT
T ss_pred CcccccccHHHHHHHh
Confidence 1122368888887765
No 76
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=9.1e-14 Score=150.90 Aligned_cols=189 Identities=17% Similarity=0.180 Sum_probs=128.1
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCC----------------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGV---------------- 385 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gv---------------- 385 (811)
+.+|++++|++++++.|...+. + ..+.|. ++|+||||||||++++++|+++..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~ 78 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA 78 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------
T ss_pred CCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc
Confidence 4579999999999888876651 1 123456 999999999999999999996421
Q ss_pred -------------CeEEeechhhhhhhhcCchhHHHHHHHHHHh--------------cCCeEEEEcCcchhhhhcCCCC
Q 047690 386 -------------PFLSISGSDFMEMFVGVGPSRVRNLFQEARQ--------------CAPSIIFIDEIDAIGRARGRGG 438 (811)
Q Consensus 386 -------------pfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~--------------~aP~ILfIDEIDaL~~~r~~~~ 438 (811)
+++.+++++.. ......+++.+..+.. ..|.||+|||+|.+-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~------- 147 (354)
T 1sxj_E 79 SNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT------- 147 (354)
T ss_dssp -------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-------
T ss_pred ccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-------
Confidence 12222222210 0011135555554422 256799999999861
Q ss_pred CCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCC
Q 047690 439 FSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHE 518 (811)
Q Consensus 439 ~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~ 518 (811)
.. ..+.|+..++.. ..++.+|.+||.++.+.+++++ |+ ..+.|++|+.+++.++++..++..+...+
T Consensus 148 -----~~---~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (354)
T 1sxj_E 148 -----KD---AQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLE 214 (354)
T ss_dssp -----HH---HHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEEC
T ss_pred -----HH---HHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCC
Confidence 22 334455555543 3457788888999999999998 88 78999999999999999999887665544
Q ss_pred -CchhhhHHHhhCCCCcHHHHHHHHHHHHH
Q 047690 519 -PSYYSQRLAALTPGFAGADIANVCNEAAL 547 (811)
Q Consensus 519 -~d~~l~~LA~~t~GfSgaDL~~LvneAal 547 (811)
.+ .++.++..+.| +.+++.++++.+..
T Consensus 215 ~~~-~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 215 TKD-ILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp CSH-HHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred cHH-HHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 33 35778887765 56667677765544
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=1.5e-15 Score=178.03 Aligned_cols=221 Identities=21% Similarity=0.166 Sum_probs=138.6
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEe----echhhhhh---
Q 047690 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSI----SGSDFMEM--- 398 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~v----s~s~~~~~--- 398 (811)
..|+|++++|+.+.-.+.- ..++.......+...++||+||||||||+||+++|+.++.+++.. ++.++...
T Consensus 295 ~~I~G~e~vk~al~~~l~~-g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG-GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC-CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhC-CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 4688999888776332210 101111111223344899999999999999999999987665542 22222211
Q ss_pred --hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC-----------CCCc
Q 047690 399 --FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG-----------TTAG 465 (811)
Q Consensus 399 --~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~-----------~~~~ 465 (811)
+.|.... ....+..| ..+||||||||.+. .. ..+.|+..|+.-. .+.+
T Consensus 374 ~~~~g~~~~-~~G~l~~A---~~gil~IDEid~l~------------~~---~q~~Ll~~le~~~i~i~~~g~~~~~~~~ 434 (595)
T 3f9v_A 374 EKGTGEYYL-EAGALVLA---DGGIAVIDEIDKMR------------DE---DRVAIHEAMEQQTVSIAKAGIVAKLNAR 434 (595)
T ss_dssp GGGTSSCSE-EECHHHHH---SSSEECCTTTTCCC------------SH---HHHHHHHHHHSSSEEEESSSSEEEECCC
T ss_pred ccccccccc-cCCeeEec---CCCcEEeehhhhCC------------Hh---HhhhhHHHHhCCEEEEecCCcEEEecCc
Confidence 1111000 01122333 34799999999882 22 3344555554321 1346
Q ss_pred EEEEecCCCCc-------------ccchhhcCCCCcce-eeeccCCCHHHHHHHHHHHHhhccC-------CC-------
Q 047690 466 VVVIAGTNRPD-------------ILDKALLRPGRFDR-QITIDKPDIKGRDQIFQVYLKKIKL-------DH------- 517 (811)
Q Consensus 466 VIVIaaTN~pd-------------~LDpALlRpGRFdr-~I~v~~Pd~~eR~eIL~~~l~~~~l-------~~------- 517 (811)
+.||||||++. .|+++|++ |||. .+..+.|+.+ ...|+++.+..... ..
T Consensus 435 ~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i 511 (595)
T 3f9v_A 435 AAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYI 511 (595)
T ss_dssp CEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHH
T ss_pred eEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHH
Confidence 88999999886 89999999 9985 4556677777 77787776654221 00
Q ss_pred ---------CC-chhhhHHHhh--------------CCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 047690 518 ---------EP-SYYSQRLAAL--------------TPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 518 ---------~~-d~~l~~LA~~--------------t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rv 569 (811)
.. +...+.+... ..+.|.+.+.++++.|...|..+.+..|+.+|+.+|+.-+
T Consensus 512 ~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 512 AYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp HHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 00 0011223322 3578999999999999999999999999999999999754
No 78
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=99.52 E-value=3.4e-14 Score=128.83 Aligned_cols=85 Identities=35% Similarity=0.581 Sum_probs=73.5
Q ss_pred CCccccHHHHHHHHcCCCCccEEEEecCeEEEEEEecCCCCCCccCCCCCCCCCCCCCCCCCceeEEEEcCChhHHHHHH
Q 047690 159 EQQQISFQEFKNKLLEPGLVDHIVVSNKSVAKVFVRSSPHNQTIEDDFHGPVSGTPSKGHGGQYKYYFNIGSVEAFEEKL 238 (811)
Q Consensus 159 ~~~~i~~~~f~~~~l~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 238 (811)
..++|||++|.++||++|.|++|+|.|++.++|++++++.. .....|+|+|||+++||++|
T Consensus 14 ~~~eIs~~eF~~~~L~kG~V~kI~V~nk~~v~V~l~~~a~~-------------------~~~~~~~f~IGSvd~FE~~L 74 (99)
T 2lna_A 14 SGREITWKDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTP-------------------VDGQYVWFNIGSVDTFERNL 74 (99)
T ss_dssp SSEECCHHHHHHHTGGGTCEEEEEEETTTEEEEEECTTTSC-------------------STTCCEEEECSCHHHHHHHH
T ss_pred CCcccCHHHHHHHHhhCCCceEEEEEcCCEEEEEEcCCCcC-------------------CCCceEEEEeCCHHHHHHHH
Confidence 46899999999789999999999999999999999876320 01122799999999999999
Q ss_pred HHHHHHcCCCCCCceeEEEecchh
Q 047690 239 EEAQETLGIDPHDFVPVTYVSEMV 262 (811)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~ 262 (811)
+++|.++||++.++|||.|..+.+
T Consensus 75 e~aQ~el~i~~~~~ipV~Y~~e~~ 98 (99)
T 2lna_A 75 ETLQQELGIEGENRVPVVYIAESD 98 (99)
T ss_dssp HHHHHHTTCCTTTCCCEEECCCTT
T ss_pred HHHHHHcCCCcccccCeEEeecCC
Confidence 999999999999999999987654
No 79
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.51 E-value=3.9e-14 Score=172.60 Aligned_cols=198 Identities=24% Similarity=0.311 Sum_probs=136.2
Q ss_pred ccccccchHhHHHHHHHHHHhc----CchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh
Q 047690 325 FRDVAGCDEAKQEIMEFVHFLK----NPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME 397 (811)
Q Consensus 325 f~dV~G~eeak~eL~e~v~~Lk----~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~ 397 (811)
+++|+|++++++.+...+...+ +|. ++..++||+||||||||++|+++|..+ +.+|+.++|+++.+
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~~~-------~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKDPN-------RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 629 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSCSS-------SCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCS
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCCCC-------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccc
Confidence 4689999999999999887532 221 122479999999999999999999988 78999999998764
Q ss_pred h------------hhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC----
Q 047690 398 M------------FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG---- 461 (811)
Q Consensus 398 ~------------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~---- 461 (811)
. |+|... ...+....+...++||||||||.+. ..+++.|+..|+.-.
T Consensus 630 ~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~---------------~~~~~~Ll~~l~~~~~~~~ 692 (854)
T 1qvr_A 630 KHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH---------------PDVFNILLQILDDGRLTDS 692 (854)
T ss_dssp SGGGGGC----------------CHHHHHHHCSSEEEEESSGGGSC---------------HHHHHHHHHHHTTTEECCS
T ss_pred hhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC---------------HHHHHHHHHHhccCceECC
Confidence 3 122211 1233344445556999999999872 245666666666421
Q ss_pred -----CCCcEEEEecCCCC--------------------------cccchhhcCCCCcceeeeccCCCHHHHHHHHHHHH
Q 047690 462 -----TTAGVVVIAGTNRP--------------------------DILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYL 510 (811)
Q Consensus 462 -----~~~~VIVIaaTN~p--------------------------d~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l 510 (811)
.-.+++||+|||.. ..+.|+|+. ||+..+.+.+|+.+++..|++.++
T Consensus 693 ~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l 770 (854)
T 1qvr_A 693 HGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQL 770 (854)
T ss_dssp SSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHH
T ss_pred CCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHH
Confidence 11368899999972 134566776 999999999999999999999888
Q ss_pred hhcc---------CCCCCchhhhHHHhhCC--CCcHHHHHHHHHHHHHHH
Q 047690 511 KKIK---------LDHEPSYYSQRLAALTP--GFAGADIANVCNEAALIA 549 (811)
Q Consensus 511 ~~~~---------l~~~~d~~l~~LA~~t~--GfSgaDL~~LvneAal~A 549 (811)
.... +..+ +..++.|+.... .+..++|.++|+.+...+
T Consensus 771 ~~~~~~~~~~~~~~~~~-~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~ 819 (854)
T 1qvr_A 771 SYLRARLAEKRISLELT-EAAKDFLAERGYDPVFGARPLRRVIQRELETP 819 (854)
T ss_dssp HHHHHHHHTTTCEEEEC-HHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHH
T ss_pred HHHHHHHHhCCceEEEC-HHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH
Confidence 6421 1111 223455666543 567788888888765543
No 80
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.49 E-value=8.3e-13 Score=145.56 Aligned_cols=229 Identities=10% Similarity=0.072 Sum_probs=152.2
Q ss_pred ccccccccchHhHHHHHHHH-HHhcCchhhhhcCCCCCCcEEE--EcCCCCCHHHHHHHHHHhc---------CCCeEEe
Q 047690 323 VYFRDVAGCDEAKQEIMEFV-HFLKNPRKYEDLGAKIPKGALL--VGPPGTGKTLLAKATAGES---------GVPFLSI 390 (811)
Q Consensus 323 v~f~dV~G~eeak~eL~e~v-~~Lk~p~~~~~lg~~~pkGvLL--~GPPGTGKT~LAkAlA~e~---------gvpfi~v 390 (811)
...++++|.++..+.|.+.+ ...... ....+..++| +||||||||+|++++++++ +.+++++
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 44578999999999988887 543211 0023457899 9999999999999999876 5678888
Q ss_pred echhh------hhhh---h-------cCchhH-HHHHHHHHH-hcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHH
Q 047690 391 SGSDF------MEMF---V-------GVGPSR-VRNLFQEAR-QCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQ 452 (811)
Q Consensus 391 s~s~~------~~~~---v-------G~~~~~-vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnq 452 (811)
+|... .... . +..... ...+..... ...|+||+|||+|.+...+. .. ...+..
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~------~~---~~~l~~ 163 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR------IA---AEDLYT 163 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT------SC---HHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC------cc---hHHHHH
Confidence 87432 1111 1 111122 222222222 24588999999999953210 01 234444
Q ss_pred HHHhhhcCC-CC--CcEEEEecCCCCc---ccc---hhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCC-Cchh
Q 047690 453 LLVEMDGFG-TT--AGVVVIAGTNRPD---ILD---KALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHE-PSYY 522 (811)
Q Consensus 453 LL~emDg~~-~~--~~VIVIaaTN~pd---~LD---pALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~-~d~~ 522 (811)
++..++... .. .++.||++||.++ .++ +.+.+ +|...+.+++++.++..++++.++........ .+..
T Consensus 164 l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~ 241 (412)
T 1w5s_A 164 LLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRH 241 (412)
T ss_dssp HHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHH
T ss_pred HHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHH
Confidence 444444332 12 6788888887665 345 66667 56656999999999999999988764332211 2233
Q ss_pred hhHHHhhCC------CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 047690 523 SQRLAALTP------GFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRV 569 (811)
Q Consensus 523 l~~LA~~t~------GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rv 569 (811)
+..++..+. | .++.+.++++.|...|..++...|+.+++..++...
T Consensus 242 ~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 242 LELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp HHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 567777777 6 577889999998888888788889999999888664
No 81
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.44 E-value=6e-14 Score=134.31 Aligned_cols=112 Identities=19% Similarity=0.256 Sum_probs=81.2
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCchhH
Q 047690 327 DVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSR 406 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~~~ 406 (811)
+++|.+++++.+.+.+..+. ..+.++||+||||||||++|++++..+. ||+.++|+++.+.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 68999999999999887532 2346799999999999999999999988 99999999876543
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCC
Q 047690 407 VRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRP 475 (811)
Q Consensus 407 vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~p 475 (811)
...+|..+. +++|||||||.+. ...+..+.+++.+. ...++.+|++||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~------------~~~q~~Ll~~l~~~----~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYS------------RNIQTGITFIIGKA----ERCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCC------------HHHHHHHHHHHHHH----TTTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCC------------HHHHHHHHHHHHhC----CCCCEEEEEecCCC
Confidence 455666553 4799999999983 22333444444432 14567888888854
No 82
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.43 E-value=1.8e-13 Score=131.16 Aligned_cols=113 Identities=14% Similarity=0.145 Sum_probs=80.8
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhhhcC
Q 047690 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMFVGV 402 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~vG~ 402 (811)
++++|.+++.+.+.+.+..+. ..+..|||+||||||||++|++++..+ +.||+ ++|+.+.+.
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CCceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 368999999999998887542 234679999999999999999999987 78999 999886543
Q ss_pred chhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCC
Q 047690 403 GPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRP 475 (811)
Q Consensus 403 ~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~p 475 (811)
.....+|..+. .++|||||||.+.. ..+. .|+..|.. ...++.+|++||.+
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l~~------------~~q~---~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHLTR------------EQQY---HLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGSCH------------HHHH---HHHHHHHS--SSCSSCEEEEESSC
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHCCH------------HHHH---HHHHHHhh--cCCCEEEEEECCcC
Confidence 34555666663 47999999999832 2233 34444432 23456788888863
No 83
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.42 E-value=1.4e-12 Score=153.03 Aligned_cols=220 Identities=21% Similarity=0.264 Sum_probs=134.9
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC---eEEeechhhh-
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP---FLSISGSDFM- 396 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp---fi~vs~s~~~- 396 (811)
....|++++|++.+++.+...+.. ...++|+||||||||+||+++|+.+... .+.+.+....
T Consensus 36 rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~ 101 (604)
T 3k1j_A 36 PEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE 101 (604)
T ss_dssp CSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT
T ss_pred cccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc
Confidence 456899999999999887776651 2479999999999999999999987432 1222111100
Q ss_pred -----------------hh--------------------------------------hhcCchhHHHHHHH---------
Q 047690 397 -----------------EM--------------------------------------FVGVGPSRVRNLFQ--------- 412 (811)
Q Consensus 397 -----------------~~--------------------------------------~vG~~~~~vr~lF~--------- 412 (811)
+. ++.........+|.
T Consensus 102 ~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~ 181 (604)
T 3k1j_A 102 NMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQS 181 (604)
T ss_dssp TSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC--
T ss_pred cCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhc
Confidence 00 00000011122221
Q ss_pred --------------HHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh----c------------CCC
Q 047690 413 --------------EARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD----G------------FGT 462 (811)
Q Consensus 413 --------------~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD----g------------~~~ 462 (811)
......+++|||||+|.+ +......|..+|..-. + ...
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l------------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~ 249 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIATL------------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPV 249 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGGS------------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCE
T ss_pred CCccccccccccCceeeecCCCEEEEechhhC------------CHHHHHHHHHHHHcCcEEecccccccccccCCCCcc
Confidence 011234679999999998 2233344444443211 1 011
Q ss_pred CCcEEEEecCCCC--cccchhhcCCCCcc---eeeeccC--C-CHHHHHHHHHHHHhhcc---CCCC-CchhhhHHHhh-
Q 047690 463 TAGVVVIAGTNRP--DILDKALLRPGRFD---RQITIDK--P-DIKGRDQIFQVYLKKIK---LDHE-PSYYSQRLAAL- 529 (811)
Q Consensus 463 ~~~VIVIaaTN~p--d~LDpALlRpGRFd---r~I~v~~--P-d~~eR~eIL~~~l~~~~---l~~~-~d~~l~~LA~~- 529 (811)
..++.||++||+. +.++++|++ ||+ ..+.++. + +.+....+++.+.+... .... .+..+..+.+.
T Consensus 250 p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~ 327 (604)
T 3k1j_A 250 PCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREA 327 (604)
T ss_dssp ECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHH
T ss_pred ceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHH
Confidence 2367899999976 679999999 996 3454432 2 34455666655443322 1111 12223444442
Q ss_pred --CCCC------cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Q 047690 530 --TPGF------AGADIANVCNEAALIAARGENSQVTMEHFEAAIDR 568 (811)
Q Consensus 530 --t~Gf------SgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~r 568 (811)
..|- +.+++.++++.|...|..++...|+.+|+.+|+.+
T Consensus 328 ~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 328 QKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 2553 68999999999998998888999999999999965
No 84
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.41 E-value=2.2e-13 Score=173.65 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=111.6
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcC----------chhhhh------cCCC----------CCCc--EEEEcCCCC
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHF-LKN----------PRKYED------LGAK----------IPKG--ALLVGPPGT 370 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~-Lk~----------p~~~~~------lg~~----------~pkG--vLL~GPPGT 370 (811)
...++|+||.|.+++|+++.+.+.+ ++. ++.|+. .|.. +|+| +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 3458999999999999999998876 522 455655 3444 7788 999999999
Q ss_pred CHHHHHHHHHHhc---CCCeEEeechhhh------------hhhhcC----chhHHHHHHHHHHhcCCeEEEEcCcchhh
Q 047690 371 GKTLLAKATAGES---GVPFLSISGSDFM------------EMFVGV----GPSRVRNLFQEARQCAPSIIFIDEIDAIG 431 (811)
Q Consensus 371 GKT~LAkAlA~e~---gvpfi~vs~s~~~------------~~~vG~----~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 431 (811)
|||+||++++.+. +-|.+.|+..+.. +.+++. +++.++.+|..|++.+||+||+|++|+|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999876 5676667665533 455666 78899999999999999999999999999
Q ss_pred hhcCC-CCCCC-CchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCC
Q 047690 432 RARGR-GGFSG-ANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRP 475 (811)
Q Consensus 432 ~~r~~-~~~~~-~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~p 475 (811)
+.+.. +.... ...-..+.++|+|.+|++.....+|+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 88431 11111 1234567899999999998777888888 67764
No 85
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.35 E-value=1.3e-11 Score=134.34 Aligned_cols=174 Identities=13% Similarity=0.143 Sum_probs=119.6
Q ss_pred chHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCC------------------------
Q 047690 331 CDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVP------------------------ 386 (811)
Q Consensus 331 ~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvp------------------------ 386 (811)
++++.+.+...+. ..++|..+||+||||||||++|+++|+.+..+
T Consensus 7 ~~~~~~~l~~~i~-----------~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQ-----------AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHH-----------TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHH-----------cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 3555555555443 34568889999999999999999999987543
Q ss_pred eEEeechhhhhhhhcCchhHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCC
Q 047690 387 FLSISGSDFMEMFVGVGPSRVRNLFQEARQC----APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGT 462 (811)
Q Consensus 387 fi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~ 462 (811)
++.++..+ .-...+...++++++.+... .+.|++|||+|.+. ....|.|+..++. +
T Consensus 76 ~~~~~~~~---~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~---------------~~a~naLLk~lEe--p 135 (334)
T 1a5t_A 76 YYTLAPEK---GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT---------------DAAANALLKTLEE--P 135 (334)
T ss_dssp EEEECCCT---TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC---------------HHHHHHHHHHHTS--C
T ss_pred EEEEeccc---cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC---------------HHHHHHHHHHhcC--C
Confidence 22222210 00012345678887776532 35799999999982 1345778888876 4
Q ss_pred CCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHH
Q 047690 463 TAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVC 542 (811)
Q Consensus 463 ~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~Lv 542 (811)
..++++|.+||.++.+.+++++ |+ ..+.++.|+.++..++++... . .+ +..+..+++.+.| +.+.+.+++
T Consensus 136 ~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~---~--~~-~~~~~~l~~~s~G-~~r~a~~~l 205 (334)
T 1a5t_A 136 PAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV---T--MS-QDALLAALRLSAG-SPGAALALF 205 (334)
T ss_dssp CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---C--CC-HHHHHHHHHHTTT-CHHHHHHTT
T ss_pred CCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc---C--CC-HHHHHHHHHHcCC-CHHHHHHHh
Confidence 5678888888999999999999 87 479999999999999888765 1 12 2234667777765 555665655
Q ss_pred HHH
Q 047690 543 NEA 545 (811)
Q Consensus 543 neA 545 (811)
+.+
T Consensus 206 ~~~ 208 (334)
T 1a5t_A 206 QGD 208 (334)
T ss_dssp SSH
T ss_pred ccc
Confidence 543
No 86
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.25 E-value=1.7e-11 Score=105.91 Aligned_cols=75 Identities=32% Similarity=0.573 Sum_probs=69.2
Q ss_pred cCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhc
Q 047690 495 DKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIG 571 (811)
Q Consensus 495 ~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rvi~ 571 (811)
++||.++|.+||+.|+++..+..++++ ..||..|+||||+||.++|++|++.|.+++...|+++||..|+++++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl--~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINL--RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCH--HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCH--HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999887666654 899999999999999999999999999999999999999999998864
No 87
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.24 E-value=1.8e-11 Score=108.19 Aligned_cols=78 Identities=31% Similarity=0.546 Sum_probs=71.0
Q ss_pred eccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcC
Q 047690 493 TIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGG 572 (811)
Q Consensus 493 ~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rvi~g 572 (811)
+-.+||.++|.+||+.++++..++.++++ ..||+.|+|||||||.+||++|++.|.++....|+++||..|++++..+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl--~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINL--RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCC--HHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCH--HHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 45689999999999999999888766664 8999999999999999999999999999999999999999999988654
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.22 E-value=7.1e-11 Score=131.41 Aligned_cols=211 Identities=21% Similarity=0.311 Sum_probs=131.6
Q ss_pred ccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh---
Q 047690 325 FRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM--- 398 (811)
Q Consensus 325 f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~--- 398 (811)
++.++|.+...+++.+.+..+... ...+||+|++|||||++|++++... +.||+.++|+.+.+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCA----------ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTC----------CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCC----------CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 567899998888888888765432 3468999999999999999999875 479999999876432
Q ss_pred --hhcCch-------hHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh--cCCC----C
Q 047690 399 --FVGVGP-------SRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD--GFGT----T 463 (811)
Q Consensus 399 --~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD--g~~~----~ 463 (811)
..|... .....+|+.|.. ++||||||+.+ ....+..+.++|++-. .... .
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~ 270 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGEL------------SLEAQAKLLRVIESGKFYRLGGRKEIE 270 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGC------------CHHHHHHHHHHHHHSEECCBTCCSBEE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhC------------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 112110 112345555543 79999999998 2344455555555411 1111 1
Q ss_pred CcEEEEecCCCCcccchhhcCCCCcce-------eeeccCCCHHHHHH----HHHHHHhh----ccCCCC-C-chhhhHH
Q 047690 464 AGVVVIAGTNRPDILDKALLRPGRFDR-------QITIDKPDIKGRDQ----IFQVYLKK----IKLDHE-P-SYYSQRL 526 (811)
Q Consensus 464 ~~VIVIaaTN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~e----IL~~~l~~----~~l~~~-~-d~~l~~L 526 (811)
.++.||+|||.. +.. +.+.|+|.. .+.+..|+..+|.+ +++.+++. .+.... . +..++.+
T Consensus 271 ~~~rii~at~~~--l~~-~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l 347 (387)
T 1ny5_A 271 VNVRILAATNRN--IKE-LVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELL 347 (387)
T ss_dssp CCCEEEEEESSC--HHH-HHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHH
T ss_pred ccEEEEEeCCCC--HHH-HHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 357899999962 222 233455532 35677788877644 34444433 222211 1 2223444
Q ss_pred HhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 047690 527 AALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAI 566 (811)
Q Consensus 527 A~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al 566 (811)
....--.+.++|+++++.|+..+ ....|+.+|+...+
T Consensus 348 ~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 348 LSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred HhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 44443335679999999887765 45689999987654
No 89
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.22 E-value=2.2e-11 Score=107.92 Aligned_cols=79 Identities=30% Similarity=0.549 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCccccc
Q 047690 498 DIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKN 577 (811)
Q Consensus 498 d~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rvi~g~e~~~ 577 (811)
|.++|.+||+.|+++.++..+++ +..||..|+||||+||.++|++|++.|.++....|+++||..|++++..|.++++
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvd--l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~ 79 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIR--WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFS 79 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCC--HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHCCCCCCCccC--HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccccc
Confidence 56899999999999988876665 4899999999999999999999999999999999999999999999999887654
Q ss_pred h
Q 047690 578 K 578 (811)
Q Consensus 578 ~ 578 (811)
.
T Consensus 80 ~ 80 (88)
T 3vlf_B 80 S 80 (88)
T ss_dssp -
T ss_pred c
Confidence 3
No 90
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=7.3e-11 Score=127.45 Aligned_cols=142 Identities=11% Similarity=0.125 Sum_probs=105.6
Q ss_pred cchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc------CCCeEEeechhhhhhhhcCc
Q 047690 330 GCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES------GVPFLSISGSDFMEMFVGVG 403 (811)
Q Consensus 330 G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~------gvpfi~vs~s~~~~~~vG~~ 403 (811)
|++++.+.|+..+.. .+ +..+|||||||||||++|+++|+.+ ...++.+++++ ...+
T Consensus 1 g~~~~~~~L~~~i~~-----------~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------SE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIG 63 (305)
T ss_dssp ---CHHHHHHHHHHT-----------CS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBC
T ss_pred ChHHHHHHHHHHHHC-----------CC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCC
Confidence 677778888777651 12 3478999999999999999999864 34677776542 0124
Q ss_pred hhHHHHHHHHHHhcC----CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccc
Q 047690 404 PSRVRNLFQEARQCA----PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILD 479 (811)
Q Consensus 404 ~~~vr~lF~~A~~~a----P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LD 479 (811)
-..+|++++.+.... ..|++|||+|.+. ....|.||..|+. +..++++|.+||.++.+.
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt---------------~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMT---------------QQAANAFLKALEE--PPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC---------------HHHHHHTHHHHHS--CCTTEEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhC---------------HHHHHHHHHHHhC--CCCCeEEEEEECChHhCh
Confidence 456888888886432 3699999999982 2345778888876 456677777788899999
Q ss_pred hhhcCCCCcceeeeccCCCHHHHHHHHHHHH
Q 047690 480 KALLRPGRFDRQITIDKPDIKGRDQIFQVYL 510 (811)
Q Consensus 480 pALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l 510 (811)
|++++ | .+.+++|+.++..++++..+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 7 89999999999999888776
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.19 E-value=7.3e-11 Score=156.47 Aligned_cols=139 Identities=24% Similarity=0.382 Sum_probs=99.9
Q ss_pred CCcEEEEcCCCCCHHHHH-HHHHHhcCCCeEEeechhhhhhhhcCchhHHHHHHHHHH---------------hcCCeEE
Q 047690 359 PKGALLVGPPGTGKTLLA-KATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEAR---------------QCAPSII 422 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LA-kAlA~e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~---------------~~aP~IL 422 (811)
.+++||+||||||||++| ++++...+.+++.++++... +...+...++... ...++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 468999999999999999 55555557888888887643 2344555555431 1124799
Q ss_pred EEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCC--------CcEEEEecCCCCc-----ccchhhcCCCCcc
Q 047690 423 FIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTT--------AGVVVIAGTNRPD-----ILDKALLRPGRFD 489 (811)
Q Consensus 423 fIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~--------~~VIVIaaTN~pd-----~LDpALlRpGRFd 489 (811)
||||||.-...+ .+.......+.|++ +..++... .++.+|||||+|. .|+++++| ||
T Consensus 1341 FiDEinmp~~d~------yg~q~~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf- 1410 (2695)
T 4akg_A 1341 FCDEINLPKLDK------YGSQNVVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA- 1410 (2695)
T ss_dssp EEETTTCSCCCS------SSCCHHHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-
T ss_pred Eecccccccccc------cCchhHHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-
Confidence 999998743222 12233456677766 33333221 3589999999995 79999999 99
Q ss_pred eeeeccCCCHHHHHHHHHHHHhhc
Q 047690 490 RQITIDKPDIKGRDQIFQVYLKKI 513 (811)
Q Consensus 490 r~I~v~~Pd~~eR~eIL~~~l~~~ 513 (811)
..+.++.|+.+++..|+..+++..
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999998753
No 92
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.06 E-value=3e-10 Score=111.84 Aligned_cols=129 Identities=20% Similarity=0.216 Sum_probs=78.1
Q ss_pred Cccccccccch----HhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeech
Q 047690 322 KVYFRDVAGCD----EAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSISGS 393 (811)
Q Consensus 322 ~v~f~dV~G~e----eak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~s 393 (811)
..+|+++++.+ ++.+.++++++ +.. .....+++|+||||||||+|++++++.+ +..++.+++.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVH---NFN------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHH---SCC------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHH---hcc------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 45899988743 33344444433 221 1225689999999999999999999876 7788888888
Q ss_pred hhhhhhhcCchh-HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecC
Q 047690 394 DFMEMFVGVGPS-RVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGT 472 (811)
Q Consensus 394 ~~~~~~vG~~~~-~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaT 472 (811)
++.+.+...... ....++.. -..|.+|+|||++.. +.+......+..++..... .+..+|.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~----------~~~~~~~~~l~~ll~~~~~----~~~~ii~ts 140 (180)
T 3ec2_A 77 DLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE----------RLSDWQRELISYIITYRYN----NLKSTIITT 140 (180)
T ss_dssp HHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS----------CCCHHHHHHHHHHHHHHHH----TTCEEEEEC
T ss_pred HHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC----------cCCHHHHHHHHHHHHHHHH----cCCCEEEEc
Confidence 876543211000 00112222 225789999999764 2234445566666655421 234566677
Q ss_pred CCC
Q 047690 473 NRP 475 (811)
Q Consensus 473 N~p 475 (811)
|.+
T Consensus 141 n~~ 143 (180)
T 3ec2_A 141 NYS 143 (180)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 93
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.01 E-value=6.3e-10 Score=97.04 Aligned_cols=74 Identities=28% Similarity=0.427 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCc
Q 047690 498 DIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGL 573 (811)
Q Consensus 498 d~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rvi~g~ 573 (811)
|.++|.+||+.|+++.++..++++ ..+|..|+||||+||.++|++|++.|.++....|+++||..|+.++..+.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl--~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDL--EDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCT--HHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhCCCCCCcccCH--HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCc
Confidence 678999999999999887766654 89999999999999999999999999999889999999999999986553
No 94
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.94 E-value=3.8e-11 Score=130.20 Aligned_cols=117 Identities=22% Similarity=0.258 Sum_probs=71.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCC--eEEeechhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCC
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVP--FLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRG 437 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvp--fi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~ 437 (811)
..++|+||||||||+||.++|.+.+.+ |+.+...+.++.+....+..+..+++...+.. +|+||+|+.+.......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~ 201 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGN 201 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccc
Confidence 346999999999999999999875544 55552244333333333444555565555543 99999999985433211
Q ss_pred CCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhh
Q 047690 438 GFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKAL 482 (811)
Q Consensus 438 ~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpAL 482 (811)
+..+ ...+.+.+++..|+++....++.+|++|| +...|+++
T Consensus 202 s~~G---~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 202 TTSG---GISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccc---hHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 0001 11345667777776665556788888888 55566554
No 95
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.93 E-value=4.7e-10 Score=97.90 Aligned_cols=72 Identities=25% Similarity=0.263 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCc
Q 047690 500 KGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGL 573 (811)
Q Consensus 500 ~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rvi~g~ 573 (811)
++|.+||+.|+++.++..++++ ..+|..|+||||+||.++|++|++.|.+++...|+++||..|+.++..+.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl--~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~ 72 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADL--DSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 72 (82)
T ss_dssp -------------CEECTTCCS--TTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHcCCCCCCcCCH--HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCc
Confidence 4789999999999887666664 88999999999999999999999999999999999999999999886554
No 96
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.90 E-value=1.2e-08 Score=112.70 Aligned_cols=196 Identities=20% Similarity=0.327 Sum_probs=116.6
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCC--CeEEeechhhhhh-----
Q 047690 326 RDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGV--PFLSISGSDFMEM----- 398 (811)
Q Consensus 326 ~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gv--pfi~vs~s~~~~~----- 398 (811)
.+++|.+....++.+.+..+... ...+|++|++||||+++|++++...+. +|+.++|+.+-+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~----------~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKS----------KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTS----------CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhcc----------chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 36889999888888887754322 345999999999999999999987643 3999999865322
Q ss_pred hhcCc-------hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhh--cCCC----CCc
Q 047690 399 FVGVG-------PSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMD--GFGT----TAG 465 (811)
Q Consensus 399 ~vG~~-------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emD--g~~~----~~~ 465 (811)
..|.. ...-...|+.|. .++||||||+.+ +...+..|.++|++-. .... ..+
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELAD---QGTLFLDEVGEL------------DQRVQAKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTT---TSEEEEETGGGS------------CHHHHHHHHHHHHHSEECCBTCCCBEECC
T ss_pred hcCccccccCCcccccCChHhhcC---CCeEEecChhhC------------CHHHHHHHHHHHHhCCcccCCCCcceeee
Confidence 11110 011123455553 369999999998 2344455555554421 1111 125
Q ss_pred EEEEecCCCCcccchhhcCCCCcce-------eeeccCCCHHHHH----HHHHHHHhhc----cCC-CCC-chhhhHHHh
Q 047690 466 VVVIAGTNRPDILDKALLRPGRFDR-------QITIDKPDIKGRD----QIFQVYLKKI----KLD-HEP-SYYSQRLAA 528 (811)
Q Consensus 466 VIVIaaTN~pd~LDpALlRpGRFdr-------~I~v~~Pd~~eR~----eIL~~~l~~~----~l~-~~~-d~~l~~LA~ 528 (811)
+.+|++||. .+.. +...|+|.. .+.+..|...+|. .++++++++. +.. ... +..++.+..
T Consensus 264 ~rii~at~~--~l~~-~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 340 (368)
T 3dzd_A 264 IRVISATNK--NLEE-EIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMK 340 (368)
T ss_dssp CEEEEEESS--CHHH-HHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHT
T ss_pred eEEEEecCC--CHHH-HHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 778999985 3332 223355543 4566777776663 3445555432 221 111 222344555
Q ss_pred hCCCCcHHHHHHHHHHHHHHH
Q 047690 529 LTPGFAGADIANVCNEAALIA 549 (811)
Q Consensus 529 ~t~GfSgaDL~~LvneAal~A 549 (811)
..---+.++|.|+++.|+..+
T Consensus 341 ~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 341 QEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CCCTTHHHHHHHHHHHHHHTC
T ss_pred CCCCcHHHHHHHHHHHHHHhC
Confidence 542235678888888876543
No 97
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.89 E-value=4.2e-09 Score=119.07 Aligned_cols=215 Identities=16% Similarity=0.097 Sum_probs=123.1
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHH-HHhcCCCeEEeec--h---hhhhhhh
Q 047690 327 DVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKAT-AGESGVPFLSISG--S---DFMEMFV 400 (811)
Q Consensus 327 dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAl-A~e~gvpfi~vs~--s---~~~~~~v 400 (811)
.|.|++++|..|.-.+. ..-.+ .+-.-++||.|+||| ||+||+++ ++.+.... ++++ + .+...+.
T Consensus 214 pI~G~e~vK~aLll~L~--GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 214 PLPGAEEVGKMLALQLF--SCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLK 284 (506)
T ss_dssp CSTTCHHHHHHHHHHHT--TCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEE
T ss_pred ccCCCHHHHHHHHHHHc--CCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEE
Confidence 38999998776654432 11111 122347999999999 99999999 77653322 2222 1 1111000
Q ss_pred cC-chhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhc-------CCCCCcEEEEecC
Q 047690 401 GV-GPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDG-------FGTTAGVVVIAGT 472 (811)
Q Consensus 401 G~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg-------~~~~~~VIVIaaT 472 (811)
+. +...-...+..|. ..|+|||||+.+- . .+...|++.|+. ..-+.++.||||+
T Consensus 285 ~~tG~~~~~G~l~LAd---gGvl~lDEIn~~~------------~---~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~ 346 (506)
T 3f8t_A 285 EDRGWALRAGAAVLAD---GGILAVDHLEGAP------------E---PHRWALMEAMDKGTVTVDGIALNARCAVLAAI 346 (506)
T ss_dssp ESSSEEEEECHHHHTT---TSEEEEECCTTCC------------H---HHHHHHHHHHHHSEEEETTEEEECCCEEEEEE
T ss_pred cCCCcccCCCeeEEcC---CCeeehHhhhhCC------------H---HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEe
Confidence 00 0000011222332 3699999998872 2 344455555542 1123568999999
Q ss_pred CCCc-----------ccchhhcCCCCcceee-eccCCCHHHH---------HHHHHHH---HhhccCCCCCc----hhhh
Q 047690 473 NRPD-----------ILDKALLRPGRFDRQI-TIDKPDIKGR---------DQIFQVY---LKKIKLDHEPS----YYSQ 524 (811)
Q Consensus 473 N~pd-----------~LDpALlRpGRFdr~I-~v~~Pd~~eR---------~eIL~~~---l~~~~l~~~~d----~~l~ 524 (811)
|..+ .|++++++ |||..+ .++.|+.+.- .+.++.+ .+......... ..+.
T Consensus 347 NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~ 424 (506)
T 3f8t_A 347 NPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLE 424 (506)
T ss_dssp CCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHH
T ss_pred CcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHH
Confidence 9865 78899999 998754 4556654431 1223322 22111111110 0111
Q ss_pred HH------H--h------hCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 047690 525 RL------A--A------LTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVI 570 (811)
Q Consensus 525 ~L------A--~------~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~rvi 570 (811)
.+ . . ...|.|++.+..|++-|...|..+.+..|+.+|+..|+.-+.
T Consensus 425 ~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 425 HWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHH
Confidence 11 1 0 355889999999999999999999999999999999997653
No 98
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.89 E-value=2.3e-09 Score=107.20 Aligned_cols=102 Identities=22% Similarity=0.253 Sum_probs=64.7
Q ss_pred CccccccccchHhHH-HHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh
Q 047690 322 KVYFRDVAGCDEAKQ-EIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME 397 (811)
Q Consensus 322 ~v~f~dV~G~eeak~-eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~ 397 (811)
..+|+++++.+...+ .+..+..++.+... ...|++++|+||||||||+||+++++++ +.+++.+++.++..
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 458999998763322 22333333322211 0124789999999999999999999977 78899999988766
Q ss_pred hhhcCc-hhHHHHHHHHHHhcCCeEEEEcCcchh
Q 047690 398 MFVGVG-PSRVRNLFQEARQCAPSIIFIDEIDAI 430 (811)
Q Consensus 398 ~~vG~~-~~~vr~lF~~A~~~aP~ILfIDEIDaL 430 (811)
.+.... ...+..++..... +.+|+|||++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 96 ELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 543211 1112333333332 469999999765
No 99
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.82 E-value=8e-08 Score=102.87 Aligned_cols=189 Identities=14% Similarity=0.135 Sum_probs=115.5
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhh------
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDF------ 395 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~------ 395 (811)
....+.++|-++..+.|.+ +. . ..++|+||+|+|||+|++.++++++.+++++++...
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~---~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LR---A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TC---S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CCCHHHhcChHHHHHHHHH-hc---C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 3456688999877776665 42 1 368999999999999999999998777888887643
Q ss_pred -----hhhhh---------------------c-----C---------chhHHHHHHHHHHhc--CCeEEEEcCcchhhhh
Q 047690 396 -----MEMFV---------------------G-----V---------GPSRVRNLFQEARQC--APSIIFIDEIDAIGRA 433 (811)
Q Consensus 396 -----~~~~v---------------------G-----~---------~~~~vr~lF~~A~~~--aP~ILfIDEIDaL~~~ 433 (811)
...+. + . ....+..++...... .|.+|+|||+|.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 00000 0 0 012345555555443 3899999999998431
Q ss_pred cCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchh-----hc--CCCCcceeeeccCCCHHHHHHHH
Q 047690 434 RGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKA-----LL--RPGRFDRQITIDKPDIKGRDQIF 506 (811)
Q Consensus 434 r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpA-----Ll--RpGRFdr~I~v~~Pd~~eR~eIL 506 (811)
. .......+..+.... .++.+|.+++....+... .. -.||+...+.+++.+.++..+++
T Consensus 153 ~--------~~~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 153 R--------GVNLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp T--------TCCCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred C--------chhHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence 0 011123333333221 245455554432222211 00 12466678999999999999999
Q ss_pred HHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHH
Q 047690 507 QVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNE 544 (811)
Q Consensus 507 ~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~Lvne 544 (811)
+..+...+...+.. ..+...|.|+ +.-+..++..
T Consensus 219 ~~~~~~~~~~~~~~---~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 219 RRGFQEADIDFKDY---EVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHTCCCCCH---HHHHHHHCSC-HHHHHHHHHH
T ss_pred HHHHHHcCCCCCcH---HHHHHHhCCC-HHHHHHHHHH
Confidence 98876544443321 6788888886 4456655543
No 100
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.76 E-value=1.9e-08 Score=97.21 Aligned_cols=104 Identities=15% Similarity=0.259 Sum_probs=67.2
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcC
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARG 435 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~ 435 (811)
...++|+||+|+|||+|++++++.+ +..++++++.++... +....|.+|+|||++.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~--- 97 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN--- 97 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS---
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh---
Confidence 3578999999999999999999977 777888888876533 1123578999999987621
Q ss_pred CCCCCCCchHHHHHHHHHHHhhhcCCCCCc-EEEEecCCCCcccc--hhhcCCCCcceeeec
Q 047690 436 RGGFSGANDERESTLNQLLVEMDGFGTTAG-VVVIAGTNRPDILD--KALLRPGRFDRQITI 494 (811)
Q Consensus 436 ~~~~~~~~~e~~~tLnqLL~emDg~~~~~~-VIVIaaTN~pd~LD--pALlRpGRFdr~I~v 494 (811)
.. +..+..++..+.. ... ++||++...|+.+. +.|.+ |+..-..+
T Consensus 98 --------~~-~~~l~~li~~~~~---~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 98 --------EE-QALLFSIFNRFRN---SGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp --------HH-HHHHHHHHHHHHH---HTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred --------HH-HHHHHHHHHHHHH---cCCcEEEEECCCCHHHccccHHHHH--HHhcCeeE
Confidence 11 3444455544322 222 35554443555443 67777 77544443
No 101
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.74 E-value=3.5e-07 Score=97.76 Aligned_cols=193 Identities=15% Similarity=0.146 Sum_probs=114.1
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh-----
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM----- 396 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~----- 396 (811)
...-+.++|.++..+.|.+.+.. + ..++|+||+|+|||+|++.++++.+ ++++++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~ 71 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGH 71 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTC
T ss_pred CCChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccC
Confidence 34456789999988888877652 1 4789999999999999999999875 7777765431
Q ss_pred -------hhh---h-----------------cCc----hhHHHHHHHH----HHhcCCeEEEEcCcchhhhhcCCCCCCC
Q 047690 397 -------EMF---V-----------------GVG----PSRVRNLFQE----ARQCAPSIIFIDEIDAIGRARGRGGFSG 441 (811)
Q Consensus 397 -------~~~---v-----------------G~~----~~~vr~lF~~----A~~~aP~ILfIDEIDaL~~~r~~~~~~~ 441 (811)
..+ . +.. ...+..++.. +....|.+|+|||+|.+..... .
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-----~ 146 (350)
T 2qen_A 72 ITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-----R 146 (350)
T ss_dssp BCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-----T
T ss_pred CCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-----c
Confidence 110 0 000 1123333332 2223489999999999843100 0
Q ss_pred CchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchh-----hc--CCCCcceeeeccCCCHHHHHHHHHHHHhhcc
Q 047690 442 ANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKA-----LL--RPGRFDRQITIDKPDIKGRDQIFQVYLKKIK 514 (811)
Q Consensus 442 ~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpA-----Ll--RpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~ 514 (811)
........+..++.. . .++.+|.++.....++.. .. -.||+...+.+.+.+.++-.++++..+...+
T Consensus 147 ~~~~~~~~L~~~~~~---~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 147 GGKELLALFAYAYDS---L---PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp TTHHHHHHHHHHHHH---C---TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred chhhHHHHHHHHHHh---c---CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 112223333333322 1 244444444332112211 01 1246667899999999999999998876555
Q ss_pred CCCCCchhhhHHHhhCCCCcHHHHHHHHH
Q 047690 515 LDHEPSYYSQRLAALTPGFAGADIANVCN 543 (811)
Q Consensus 515 l~~~~d~~l~~LA~~t~GfSgaDL~~Lvn 543 (811)
...+.+ .+..+...|.|+. .-+..++.
T Consensus 221 ~~~~~~-~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 221 LDVPEN-EIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp CCCCHH-HHHHHHHHHTTCH-HHHHHHHH
T ss_pred CCCCHH-HHHHHHHHhCCCH-HHHHHHHH
Confidence 443322 3467788888754 44555554
No 102
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.64 E-value=1.7e-08 Score=108.95 Aligned_cols=97 Identities=24% Similarity=0.297 Sum_probs=61.0
Q ss_pred ccccccccchH----hHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeechh
Q 047690 323 VYFRDVAGCDE----AKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSISGSD 394 (811)
Q Consensus 323 v~f~dV~G~ee----ak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~s~ 394 (811)
.+|+++.+... +.+.+.+++. +.. ...+.+++|+||||||||+||+++|.++ +.+++.+++++
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~---~~~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~ 191 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVE---QYP------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPS 191 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHH---HCS------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHH---hcc------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHH
Confidence 57899887542 2333333333 211 1125789999999999999999999865 48899999998
Q ss_pred hhhhhhcCc-hhHHHHHHHHHHhcCCeEEEEcCcchh
Q 047690 395 FMEMFVGVG-PSRVRNLFQEARQCAPSIIFIDEIDAI 430 (811)
Q Consensus 395 ~~~~~vG~~-~~~vr~lF~~A~~~aP~ILfIDEIDaL 430 (811)
+...+.... ...+..++.... .+.+|+||||+..
T Consensus 192 l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 192 FAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 876554321 112222222222 3469999999665
No 103
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.59 E-value=3.1e-07 Score=122.29 Aligned_cols=127 Identities=19% Similarity=0.240 Sum_probs=94.6
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCC
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGG 438 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~ 438 (811)
..|+++.||+|||||.+++++|+.+|.+++.++|++-. ....+..+|..+... .+.+++||++.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~l------d~~~lg~~~~g~~~~-Gaw~~~DE~nr~-------- 709 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSF------DYQVLSRLLVGITQI-GAWGCFDEFNRL-------- 709 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSC------CHHHHHHHHHHHHHH-TCEEEEETTTSS--------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCC------ChhHhhHHHHHHHhc-CCEeeehhhhhc--------
Confidence 35789999999999999999999999999999998754 345667788777664 479999999887
Q ss_pred CCCCchHHHHHHHHHHHhhh----c-----------CCCCCcEEEEecCCC----CcccchhhcCCCCcceeeeccCCCH
Q 047690 439 FSGANDERESTLNQLLVEMD----G-----------FGTTAGVVVIAGTNR----PDILDKALLRPGRFDRQITIDKPDI 499 (811)
Q Consensus 439 ~~~~~~e~~~tLnqLL~emD----g-----------~~~~~~VIVIaaTN~----pd~LDpALlRpGRFdr~I~v~~Pd~ 499 (811)
..+....+++.+..+. . +.-+....|++|.|. ...|+++|++ || +.+.+..||.
T Consensus 710 ----~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~ 782 (2695)
T 4akg_A 710 ----DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQS 782 (2695)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCH
T ss_pred ----ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCH
Confidence 3344455544443321 1 111234567778883 3468999999 89 7899999999
Q ss_pred HHHHHHHH
Q 047690 500 KGRDQIFQ 507 (811)
Q Consensus 500 ~eR~eIL~ 507 (811)
+...+|+-
T Consensus 783 ~~i~ei~l 790 (2695)
T 4akg_A 783 GTIAEMIL 790 (2695)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877753
No 104
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.56 E-value=7.2e-08 Score=97.83 Aligned_cols=128 Identities=18% Similarity=0.248 Sum_probs=81.4
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHh--------cC-CCeEEeechhhhhhhh----------cC-----chhHHHHHHHHH
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGE--------SG-VPFLSISGSDFMEMFV----------GV-----GPSRVRNLFQEA 414 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e--------~g-vpfi~vs~s~~~~~~v----------G~-----~~~~vr~lF~~A 414 (811)
+--.|++|+||||||++|.+++.. .| .+++..++.++.-... .. ....+.+++..+
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 345789999999999999886433 35 7787777766542211 11 112333332112
Q ss_pred HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeec
Q 047690 415 RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITI 494 (811)
Q Consensus 415 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v 494 (811)
....+||+|||++.+.+.+... ... ..++..+.. ....++-||.+|+.++.|+.++++ |++..+++
T Consensus 85 -~~~~~vliIDEAq~l~~~~~~~----~e~------~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l 150 (199)
T 2r2a_A 85 -ENIGSIVIVDEAQDVWPARSAG----SKI------PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHI 150 (199)
T ss_dssp -GGTTCEEEETTGGGTSBCCCTT----CCC------CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEE
T ss_pred -ccCceEEEEEChhhhccCcccc----chh------HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEE
Confidence 2346899999999997544211 111 124444443 234456667778889999999988 99999999
Q ss_pred cCCCHH
Q 047690 495 DKPDIK 500 (811)
Q Consensus 495 ~~Pd~~ 500 (811)
..|...
T Consensus 151 ~~~~~~ 156 (199)
T 2r2a_A 151 ASNKMG 156 (199)
T ss_dssp EECSSC
T ss_pred cCcccC
Confidence 886543
No 105
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.46 E-value=1e-07 Score=105.79 Aligned_cols=119 Identities=19% Similarity=0.214 Sum_probs=77.8
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhh-h
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGR-A 433 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~-~ 433 (811)
+.+.+..++|+||||+|||||++++++..+..++.+...+ .+.. |........+++++||++.+.. .
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----------~~~~--~~lg~~~q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----------DRLN--FELGVAIDQFLVVFEDVKGTGGES 232 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----------TTHH--HHHGGGTTCSCEEETTCCCSTTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----------hhHH--HHHHHhcchhHHHHHHHHHHHHHH
Confidence 5666778999999999999999999998877665543222 1111 1111122346889999999865 2
Q ss_pred cCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccC
Q 047690 434 RGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDK 496 (811)
Q Consensus 434 r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~ 496 (811)
++. .... .. .....+...+|| .+.|+.+||+++.+ +++++|||++..+....
T Consensus 233 r~l---~~~~-~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 233 RDL---PSGQ-GI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTC---CCCS-HH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hhc---cccC-cc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 211 0111 11 123444455665 34578889999999 79999999998877654
No 106
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.41 E-value=2.5e-07 Score=119.77 Aligned_cols=117 Identities=18% Similarity=0.210 Sum_probs=81.8
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhh----hhhhc------------CchhHHHHHHHHHH
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFM----EMFVG------------VGPSRVRNLFQEAR 415 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~----~~~vG------------~~~~~vr~lF~~A~ 415 (811)
|...+++++|+||||||||+||.+++.++ |.....++..+.. ....| .++..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 46677889999999999999999998875 5566666655321 11222 23456777777888
Q ss_pred hcCCeEEEEcCcchhhhhcCC-CCCCC-CchHHHHHHHHHHHhhhcCCCCCcEEEEec
Q 047690 416 QCAPSIIFIDEIDAIGRARGR-GGFSG-ANDERESTLNQLLVEMDGFGTTAGVVVIAG 471 (811)
Q Consensus 416 ~~aP~ILfIDEIDaL~~~r~~-~~~~~-~~~e~~~tLnqLL~emDg~~~~~~VIVIaa 471 (811)
..+|++|||||++.+.+.+.. +.... ......+.++++|.+|.++....+++||.+
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~t 1560 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 1560 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 899999999999998764310 11111 111245688999999988877777777765
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.27 E-value=2.8e-06 Score=114.11 Aligned_cols=138 Identities=22% Similarity=0.326 Sum_probs=92.3
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHH-hcCCCeEEeechhhhhhhhcCchhHHHHHHHHH----H-h-----------cCCeE
Q 047690 359 PKGALLVGPPGTGKTLLAKATAG-ESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEA----R-Q-----------CAPSI 421 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~-e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A----~-~-----------~aP~I 421 (811)
.+.+||+||||||||++++.... ..+.+++.++++.-. +...+...++.. + . ...+|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 35799999999999987765444 446677888887643 234455555431 0 0 11269
Q ss_pred EEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC--------CCCcEEEEecCCCCc-----ccchhhcCCCCc
Q 047690 422 IFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG--------TTAGVVVIAGTNRPD-----ILDKALLRPGRF 488 (811)
Q Consensus 422 LfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~--------~~~~VIVIaaTN~pd-----~LDpALlRpGRF 488 (811)
+|||||+.-... ..+.......|.|++..- ++. .-.++.+|||+|.|. .|+++++| ||
T Consensus 1378 lFiDDiNmp~~D------~yGtQ~~ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F 1448 (3245)
T 3vkg_A 1378 VFCDEINLPSTD------KYGTQRVITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA 1448 (3245)
T ss_dssp EEETTTTCCCCC------TTSCCHHHHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC
T ss_pred EEecccCCCCcc------ccccccHHHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc
Confidence 999999753111 112233455666666431 221 124688999999884 59999999 99
Q ss_pred ceeeeccCCCHHHHHHHHHHHHhh
Q 047690 489 DRQITIDKPDIKGRDQIFQVYLKK 512 (811)
Q Consensus 489 dr~I~v~~Pd~~eR~eIL~~~l~~ 512 (811)
. .+.++.|+.+....|+..++..
T Consensus 1449 ~-vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1449 P-ILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp C-EEECCCCCHHHHHHHHHHHHHH
T ss_pred e-EEEeCCCCHHHHHHHHHHHHHH
Confidence 5 6999999999999998877654
No 108
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.26 E-value=2.3e-06 Score=96.85 Aligned_cols=129 Identities=18% Similarity=0.209 Sum_probs=100.3
Q ss_pred CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEec---------CC---CCcccchhhcCCC
Q 047690 419 PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAG---------TN---RPDILDKALLRPG 486 (811)
Q Consensus 419 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaa---------TN---~pd~LDpALlRpG 486 (811)
|.|+||||+|.+. ....+.|+..|+... ..++|+++ |+ .+..|+|.+++
T Consensus 296 ~~VliIDEa~~l~---------------~~a~~aLlk~lEe~~--~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s-- 356 (456)
T 2c9o_A 296 PGVLFVDEVHMLD---------------IECFTYLHRALESSI--APIVIFASNRGNCVIRGTEDITSPHGIPLDLLD-- 356 (456)
T ss_dssp ECEEEEESGGGCB---------------HHHHHHHHHHTTSTT--CCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--
T ss_pred ceEEEEechhhcC---------------HHHHHHHHHHhhccC--CCEEEEecCCccccccccccccccccCChhHHh--
Confidence 5699999999982 346778888888643 34555555 33 26788999999
Q ss_pred CcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhC-CCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 047690 487 RFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALT-PGFAGADIANVCNEAALIAARGENSQVTMEHFEAA 565 (811)
Q Consensus 487 RFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t-~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~A 565 (811)
||.. +.++.|+.++..++|+..+...+...+.+. +..++..+ .| +++...++++.|...|..++...|+.+|+..|
T Consensus 357 R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~-~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~ 433 (456)
T 2c9o_A 357 RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEA-LNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEI 433 (456)
T ss_dssp TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHH-HHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHH
Confidence 9976 699999999999999998876555444332 46677766 44 88899999999999999889999999999999
Q ss_pred HHHH
Q 047690 566 IDRV 569 (811)
Q Consensus 566 l~rv 569 (811)
+..+
T Consensus 434 ~~~~ 437 (456)
T 2c9o_A 434 SELF 437 (456)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 8654
No 109
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.16 E-value=4.3e-06 Score=90.55 Aligned_cols=179 Identities=15% Similarity=0.136 Sum_probs=115.5
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhc---CC-CeEEeechhhhhhhhcCchhHHHHHHHHHHh----cCCeEEEEcCcc
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGES---GV-PFLSISGSDFMEMFVGVGPSRVRNLFQEARQ----CAPSIIFIDEID 428 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~---gv-pfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEID 428 (811)
+.+..+||+||+|+||+..+++++..+ +. ++..+... +...++++++.+.. ....||+|||+|
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---------PNTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---------TTCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---------CCCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 356678999999999999999998865 22 22222110 12345666665543 235699999998
Q ss_pred h-hhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCC-----CcccchhhcCCCCcceeeeccCCCHHHH
Q 047690 429 A-IGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNR-----PDILDKALLRPGRFDRQITIDKPDIKGR 502 (811)
Q Consensus 429 a-L~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~-----pd~LDpALlRpGRFdr~I~v~~Pd~~eR 502 (811)
. +.. ...+.|+..++... ...++|+++++. ...+-+++.+ |. ..+.+..++..+.
T Consensus 87 ~kl~~---------------~~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l 147 (343)
T 1jr3_D 87 NGPNA---------------AINEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQL 147 (343)
T ss_dssp SCCCT---------------THHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHH
T ss_pred CCCCh---------------HHHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHH
Confidence 8 621 13455666666532 233444444431 2346778877 55 5788999999999
Q ss_pred HHHHHHHHhhccCCCCCchhhhHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Q 047690 503 DQIFQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDR 568 (811)
Q Consensus 503 ~eIL~~~l~~~~l~~~~d~~l~~LA~~t~GfSgaDL~~LvneAal~Aar~~~~~It~ed~~~Al~r 568 (811)
...++..++..++..+.+. ++.++..+.| +.+++.+.++..+..+ +...||.++++..+..
T Consensus 148 ~~~l~~~~~~~g~~i~~~a-~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 148 PRWVAARAKQLNLELDDAA-NQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHHTTCEECHHH-HHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHH-HHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhh
Confidence 9999999988776655443 4667777655 5555555555544432 3457999999988754
No 110
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.00 E-value=5.7e-06 Score=84.36 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=24.8
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCe
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPF 387 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpf 387 (811)
+++||+||||||||++|.++|+.+...+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 5799999999999999999999886543
No 111
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.99 E-value=1.9e-05 Score=78.30 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=24.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeE
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFL 388 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi 388 (811)
.+.|.||+|+|||||++.+++..++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 3689999999999999999998865544
No 112
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.90 E-value=2.6e-05 Score=82.50 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=23.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCC
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGV 385 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gv 385 (811)
++++|+||||||||++|++||+....
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 57999999999999999999997643
No 113
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.88 E-value=5.8e-05 Score=101.73 Aligned_cols=125 Identities=23% Similarity=0.298 Sum_probs=91.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhcCchhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCC
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGF 439 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~ 439 (811)
.|..+.||+|||||.++|.+|+.+|.+++.++|++-. ....+..+|.-+.+. .+..++||++.+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~------d~~~~g~i~~G~~~~-GaW~cfDEfNrl--------- 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF------DLQAMSRIFVGLCQC-GAWGCFDEFNRL--------- 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC------CHHHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC------CHHHHHHHHhhHhhc-CcEEEehhhhcC---------
Confidence 3678999999999999999999999999999998743 334566677766553 468899999887
Q ss_pred CCCchHHHHHHHHHHHhh-------------h-c--CCCCCcEEEEecCCC----CcccchhhcCCCCcceeeeccCCCH
Q 047690 440 SGANDERESTLNQLLVEM-------------D-G--FGTTAGVVVIAGTNR----PDILDKALLRPGRFDRQITIDKPDI 499 (811)
Q Consensus 440 ~~~~~e~~~tLnqLL~em-------------D-g--~~~~~~VIVIaaTN~----pd~LDpALlRpGRFdr~I~v~~Pd~ 499 (811)
..+...++.+.+..+ + | +.-+....|++|.|. -..|+++|+. || |.|.+..||.
T Consensus 669 ---~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~ 742 (3245)
T 3vkg_A 669 ---EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDR 742 (3245)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCH
T ss_pred ---CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCH
Confidence 234444444433321 1 1 112335677888883 3479999999 88 7899999999
Q ss_pred HHHHHHH
Q 047690 500 KGRDQIF 506 (811)
Q Consensus 500 ~eR~eIL 506 (811)
+...+|+
T Consensus 743 ~~i~ei~ 749 (3245)
T 3vkg_A 743 EMIAQVM 749 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777764
No 114
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.76 E-value=3.3e-05 Score=77.23 Aligned_cols=35 Identities=29% Similarity=0.229 Sum_probs=29.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSISGSD 394 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~ 394 (811)
.-++|+||||+|||+|++.+|...+.++++++...
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 34789999999999999999986677888887654
No 115
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.66 E-value=0.0001 Score=74.75 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=47.0
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh--c-------CCCeEEeechhh------hhh--hhcC---------------chhH-
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE--S-------GVPFLSISGSDF------MEM--FVGV---------------GPSR- 406 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e--~-------gvpfi~vs~s~~------~~~--~vG~---------------~~~~- 406 (811)
.-++|+||||+|||+|++.++.. . +...++++..+. ... ..+. ....
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQ 104 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHHHH
Confidence 44789999999999999999984 2 456777776541 110 0111 1111
Q ss_pred ---HHHHHHHHHhcCCeEEEEcCcchhhh
Q 047690 407 ---VRNLFQEARQCAPSIIFIDEIDAIGR 432 (811)
Q Consensus 407 ---vr~lF~~A~~~aP~ILfIDEIDaL~~ 432 (811)
+..+.+......|.+|+|||+..+..
T Consensus 105 ~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 105 TQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 22233344456799999999998754
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.63 E-value=0.00026 Score=70.90 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=26.2
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeec
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES---GVPFLSISG 392 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~ 392 (811)
.-++|+||||+|||+|++.++... +.+++.++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 447899999999999999999654 556666654
No 117
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.59 E-value=0.00013 Score=80.62 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=65.3
Q ss_pred CCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh----hhcC-----------chhHHHHHHHH-HHh
Q 047690 356 AKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM----FVGV-----------GPSRVRNLFQE-ARQ 416 (811)
Q Consensus 356 ~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~----~vG~-----------~~~~vr~lF~~-A~~ 416 (811)
.....-++|+||||+|||+||..+|..+ +.++++++...-.+. ..|. ....+...... .+.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~ 150 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 150 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhc
Confidence 3334458999999999999999998764 678888876432211 1121 11222223322 234
Q ss_pred cCCeEEEEcCcchhhhhcCCCCCCCCc--hHHHHHHHHHHHhhhcCCCCCcEEEEec
Q 047690 417 CAPSIIFIDEIDAIGRARGRGGFSGAN--DERESTLNQLLVEMDGFGTTAGVVVIAG 471 (811)
Q Consensus 417 ~aP~ILfIDEIDaL~~~r~~~~~~~~~--~e~~~tLnqLL~emDg~~~~~~VIVIaa 471 (811)
..+++|+||.+..+.......+..+.. ....+.+.+++..+..+....++.||++
T Consensus 151 ~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~ 207 (366)
T 1xp8_A 151 GAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFI 207 (366)
T ss_dssp TCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 568999999999986422110000100 0223456666666655444555666654
No 118
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.59 E-value=0.0003 Score=71.55 Aligned_cols=125 Identities=22% Similarity=0.241 Sum_probs=68.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHH--Hh--cCCCeEEeechhhhhh------hhcCc--------------------------
Q 047690 360 KGALLVGPPGTGKTLLAKATA--GE--SGVPFLSISGSDFMEM------FVGVG-------------------------- 403 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA--~e--~gvpfi~vs~s~~~~~------~vG~~-------------------------- 403 (811)
.-+.|.||+|+|||||++.++ .. .+...+.++..+.... ..+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEE 110 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC------------
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccccccc
Confidence 448899999999999999998 32 3455555544321100 00100
Q ss_pred ----------hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC
Q 047690 404 ----------PSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN 473 (811)
Q Consensus 404 ----------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN 473 (811)
......+........|.+|+|||.-++..... ........+..++..+.. .++.||.+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~------d~~~~~~~l~~l~~~l~~----~g~tii~vtH 180 (251)
T 2ehv_A 111 KFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE------EERKIREVLLKLNTILLE----MGVTTILTTE 180 (251)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS------SGGGHHHHHHHHHHHHHH----HCCEEEEEEC
T ss_pred ceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC------CHHHHHHHHHHHHHHHHH----CCCeEEEEEC
Confidence 11122233333456899999999988764321 123344556666666532 2456666777
Q ss_pred CCcccc-----hhhcCCCCc-ceeeeccC
Q 047690 474 RPDILD-----KALLRPGRF-DRQITIDK 496 (811)
Q Consensus 474 ~pd~LD-----pALlRpGRF-dr~I~v~~ 496 (811)
..+... +.+.. .+ |+.+.+..
T Consensus 181 ~~~~~~~~~~~~~i~~--~~aD~vi~l~~ 207 (251)
T 2ehv_A 181 APDPQHGKLSRYGIEE--FIARGVIVLDL 207 (251)
T ss_dssp CC----CCSSSSSCGG--GGCSEEEEEEE
T ss_pred CCCCCcccccccChhh--EeeeEEEEEee
Confidence 655442 22222 45 77776653
No 119
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.58 E-value=8.9e-05 Score=81.58 Aligned_cols=111 Identities=23% Similarity=0.268 Sum_probs=64.2
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh----hhhcCc--------hhHHHHHHH----HHHhcCCe
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME----MFVGVG--------PSRVRNLFQ----EARQCAPS 420 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~----~~vG~~--------~~~vr~lF~----~A~~~aP~ 420 (811)
.-++|+||||+|||+|+..++..+ +.++++++..+... .-.|.. +..+.+++. ..+...|.
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 347899999999999999998864 66788887654211 111111 111222222 23346789
Q ss_pred EEEEcCcchhhh-hcCCCCCCCCc--hHHHHHHHHHHHhhhcCCCCCcEEEEec
Q 047690 421 IIFIDEIDAIGR-ARGRGGFSGAN--DERESTLNQLLVEMDGFGTTAGVVVIAG 471 (811)
Q Consensus 421 ILfIDEIDaL~~-~r~~~~~~~~~--~e~~~tLnqLL~emDg~~~~~~VIVIaa 471 (811)
+++||.+..+.+ ..-.+. .+.. ....+.+.+++..+..+....++.||.+
T Consensus 142 lvVIDSi~~l~~~~el~g~-~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 142 LIVVDSVAALVPRAEIEGA-MGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp EEEEECTTTCCCHHHHTTC-CCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred eEEehHhhhhcChhhhccc-chhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 999999998865 211111 1111 1234556677666665544555555554
No 120
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.57 E-value=0.00014 Score=78.50 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=65.4
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhc---------CCCeEEeechhh--hh----h--hhcCc---------------hh
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGES---------GVPFLSISGSDF--ME----M--FVGVG---------------PS 405 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~---------gvpfi~vs~s~~--~~----~--~vG~~---------------~~ 405 (811)
...-++|+||||+|||+||..+|..+ +.++++++...- .+ . -.|.. ..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 33458999999999999999999865 456788876542 11 0 01111 11
Q ss_pred ----HHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEec
Q 047690 406 ----RVRNLFQEARQ-CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAG 471 (811)
Q Consensus 406 ----~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaa 471 (811)
.+..+....+. ..+.+|+||.+..+......+ .+...++...+.+++..+..+....++.||.+
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~--~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~ 254 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG--RENLAVRQQKLNKHLHQLTRLAEVYDIAVIIT 254 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT--TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 12233334444 678999999999997543211 01122333456666666655444445555554
No 121
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.53 E-value=8.8e-05 Score=96.51 Aligned_cols=118 Identities=19% Similarity=0.256 Sum_probs=78.3
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhh----hcC--------chhHHHHHHHHHHh---
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMF----VGV--------GPSRVRNLFQEARQ--- 416 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~----vG~--------~~~~vr~lF~~A~~--- 416 (811)
|......++|+|+||+|||+||..+|..+ +.++++++..+..+.. .|. .+..+..++..+++
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 35556678999999999999999999876 4579999886544332 221 22335566665544
Q ss_pred -cCCeEEEEcCcchhhh-hc--CCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC
Q 047690 417 -CAPSIIFIDEIDAIGR-AR--GRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN 473 (811)
Q Consensus 417 -~aP~ILfIDEIDaL~~-~r--~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN 473 (811)
..|++|+||.|+.+.. .. +..+. ....-..+.+++++..|..+....++.||+...
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs-~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGD-SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTC-CCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCc-hhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 6799999999999975 22 11010 111222445788888888776667777776654
No 122
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.53 E-value=7.5e-05 Score=81.89 Aligned_cols=74 Identities=23% Similarity=0.271 Sum_probs=47.5
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh----hhhcCch--------hHHHHHHH----HHHhcCC
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME----MFVGVGP--------SRVRNLFQ----EARQCAP 419 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~----~~vG~~~--------~~vr~lF~----~A~~~aP 419 (811)
..-++|+||||+|||+||..++..+ +.++++++...-.. ...|... ..+.+++. .++...|
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAL 140 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCC
Confidence 3448999999999999999998754 56777777543211 1122111 11222222 3335569
Q ss_pred eEEEEcCcchhhh
Q 047690 420 SIIFIDEIDAIGR 432 (811)
Q Consensus 420 ~ILfIDEIDaL~~ 432 (811)
++|+||++..+..
T Consensus 141 ~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 141 DIIVIDSVAALVP 153 (349)
T ss_dssp SEEEEECGGGCCC
T ss_pred CEEEEcChHhhcc
Confidence 9999999999863
No 123
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.46 E-value=0.0001 Score=71.48 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=34.1
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
++-|+|+|+||+||||++++++..++.+++.++...+.+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 456899999999999999999999999999888766644
No 124
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.42 E-value=0.00028 Score=70.86 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=20.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-+.|.||+|+|||+|++.+++..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999854
No 125
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.34 E-value=0.00022 Score=78.37 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=50.3
Q ss_pred CCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh----hhhcC-----------chhHHHHHHHH-HHh
Q 047690 356 AKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME----MFVGV-----------GPSRVRNLFQE-ARQ 416 (811)
Q Consensus 356 ~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~----~~vG~-----------~~~~vr~lF~~-A~~ 416 (811)
.....-++|+||||+|||+||..+|..+ +.++++++...-.+ .-.|. ....+..++.. ++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 3344558999999999999999998764 67888888732111 11111 12233333332 234
Q ss_pred cCCeEEEEcCcchhhh
Q 047690 417 CAPSIIFIDEIDAIGR 432 (811)
Q Consensus 417 ~aP~ILfIDEIDaL~~ 432 (811)
..+.+|+||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 6789999999999864
No 126
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.33 E-value=0.00043 Score=75.49 Aligned_cols=111 Identities=21% Similarity=0.217 Sum_probs=63.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc---------CCCeEEeechhh------hhh--hhcCc---------------hhHH-
Q 047690 361 GALLVGPPGTGKTLLAKATAGES---------GVPFLSISGSDF------MEM--FVGVG---------------PSRV- 407 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~---------gvpfi~vs~s~~------~~~--~vG~~---------------~~~v- 407 (811)
-++|+||||+|||+||..+|..+ +.++++++...- ... ..|.. ...+
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~ 203 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQM 203 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHH
Confidence 37899999999999999999863 456777776441 111 01111 1111
Q ss_pred ---HHHHHHHHh--cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCC
Q 047690 408 ---RNLFQEARQ--CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTN 473 (811)
Q Consensus 408 ---r~lF~~A~~--~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN 473 (811)
..+....+. ..+.+|+||.+..+....-.+ .+...++...+.+++..+..+....++.||.+..
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~--~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG--RGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCG--GGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 222334444 678999999999997542110 0111223334566665555544444555555443
No 127
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.32 E-value=0.0022 Score=74.04 Aligned_cols=167 Identities=12% Similarity=0.128 Sum_probs=90.9
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc-------CCCeEEeechhh-
Q 047690 324 YFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES-------GVPFLSISGSDF- 395 (811)
Q Consensus 324 ~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~-------gvpfi~vs~s~~- 395 (811)
....++|.++..++|.+.+... ...++-++|+||+|+|||+||+.++... ...++.++.+..
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 4567899998888887766421 0123458999999999999999997532 112444433221
Q ss_pred ----hhhh------hc----------CchhHHHHHHHHHHh--cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHH
Q 047690 396 ----MEMF------VG----------VGPSRVRNLFQEARQ--CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQL 453 (811)
Q Consensus 396 ----~~~~------vG----------~~~~~vr~lF~~A~~--~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqL 453 (811)
...+ .+ .....+...+..... ..|++|+||+++... .
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~---------------------~ 250 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW---------------------V 250 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH---------------------H
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH---------------------H
Confidence 1111 11 011222222322222 268999999996530 1
Q ss_pred HHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeec---cCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhC
Q 047690 454 LVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITI---DKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALT 530 (811)
Q Consensus 454 L~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v---~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t 530 (811)
+ +.+. .+..||.||........ . . + ..+.+ ...+.++-.++|..++.... . ........|++.+
T Consensus 251 l---~~l~--~~~~ilvTsR~~~~~~~-~-~-~---~~~~v~~l~~L~~~ea~~L~~~~~~~~~-~-~~~~~~~~i~~~~ 317 (591)
T 1z6t_A 251 L---KAFD--SQCQILLTTRDKSVTDS-V-M-G---PKYVVPVESSLGKEKGLEILSLFVNMKK-A-DLPEQAHSIIKEC 317 (591)
T ss_dssp H---HTTC--SSCEEEEEESCGGGGTT-C-C-S---CEEEEECCSSCCHHHHHHHHHHHHTSCG-G-GSCTHHHHHHHHH
T ss_pred H---HHhc--CCCeEEEECCCcHHHHh-c-C-C---CceEeecCCCCCHHHHHHHHHHHhCCCc-c-cccHHHHHHHHHh
Confidence 1 1222 23455556654332211 1 1 1 22333 46788888889988775311 1 1122357788888
Q ss_pred CCCc
Q 047690 531 PGFA 534 (811)
Q Consensus 531 ~GfS 534 (811)
.|..
T Consensus 318 ~G~P 321 (591)
T 1z6t_A 318 KGSP 321 (591)
T ss_dssp TTCH
T ss_pred CCCc
Confidence 8763
No 128
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.28 E-value=0.0014 Score=74.17 Aligned_cols=94 Identities=28% Similarity=0.369 Sum_probs=66.9
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCC--------CCCcEEEEecC----CC
Q 047690 407 VRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFG--------TTAGVVVIAGT----NR 474 (811)
Q Consensus 407 vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~--------~~~~VIVIaaT----N~ 474 (811)
.+...+.|..+ +|||+||||.+++..+. .+.+...+.+...||..||+-. ..++|++|++. +.
T Consensus 241 ~~~ai~~ae~~--~il~~DEidki~~~~~~---~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~ 315 (444)
T 1g41_A 241 KQKAIDAVEQN--GIVFIDEIDKICKKGEY---SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVAR 315 (444)
T ss_dssp HHHHHHHHHHH--CEEEEETGGGGSCCSSC---SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCC
T ss_pred HHHHHHHhccC--CeeeHHHHHHHhhccCC---CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCC
Confidence 34444444332 59999999999765321 2334445567788888888732 35678888886 23
Q ss_pred CcccchhhcCCCCcceeeeccCCCHHHHHHHHH
Q 047690 475 PDILDKALLRPGRFDRQITIDKPDIKGRDQIFQ 507 (811)
Q Consensus 475 pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~ 507 (811)
|..+-|.|+. ||..+|.++.++.++...|++
T Consensus 316 ~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 316 PSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred hhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 4445688887 999999999999999999994
No 129
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.24 E-value=0.00047 Score=75.50 Aligned_cols=113 Identities=20% Similarity=0.248 Sum_probs=60.8
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcC---------CCeEEeechhhh--h----h--hhcC---------------chhHH
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESG---------VPFLSISGSDFM--E----M--FVGV---------------GPSRV 407 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~g---------vpfi~vs~s~~~--~----~--~vG~---------------~~~~v 407 (811)
.-+.|+||||+|||+|++.++..+. -..++++..+.. . . ..+. .....
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~ 211 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQ 211 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChHHH
Confidence 3478999999999999999998762 355777664320 0 0 0000 01112
Q ss_pred HHHHHH----HHh-----cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCC
Q 047690 408 RNLFQE----ARQ-----CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNR 474 (811)
Q Consensus 408 r~lF~~----A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~ 474 (811)
..++.. +.. ..|.+|+|||+-++......+. +....+...+.+++..+..+....++.||.+++.
T Consensus 212 ~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~--~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~ 285 (349)
T 1pzn_A 212 MLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR--GALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 285 (349)
T ss_dssp HHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCST--TTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccc--ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence 222222 233 5799999999988865431110 1112222334555544444333345556655554
No 130
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.21 E-value=0.00022 Score=91.82 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=54.8
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhh----hhhhcC--------chhHHHHHHHHHH----
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFM----EMFVGV--------GPSRVRNLFQEAR---- 415 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~----~~~vG~--------~~~~vr~lF~~A~---- 415 (811)
|......++|+||||+|||+||..+|.++ +.++++++..+.. ....|. .+..+.+++..++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 35556679999999999999999998865 5678888765433 222221 1223445555554
Q ss_pred hcCCeEEEEcCcchhhh
Q 047690 416 QCAPSIIFIDEIDAIGR 432 (811)
Q Consensus 416 ~~aP~ILfIDEIDaL~~ 432 (811)
...|++|+||.+..+..
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 47899999999999863
No 131
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.19 E-value=0.00047 Score=74.72 Aligned_cols=114 Identities=16% Similarity=0.216 Sum_probs=62.9
Q ss_pred CCCc-EEEEcCCCCCHHHHHHHHHHhc-----CCCeEEeechhhhh----hhhcCc--------hhHHHHH-HH---HH-
Q 047690 358 IPKG-ALLVGPPGTGKTLLAKATAGES-----GVPFLSISGSDFME----MFVGVG--------PSRVRNL-FQ---EA- 414 (811)
Q Consensus 358 ~pkG-vLL~GPPGTGKT~LAkAlA~e~-----gvpfi~vs~s~~~~----~~vG~~--------~~~vr~l-F~---~A- 414 (811)
+|+| ++|+||||+|||+|+-.++.++ +..+++++..+-.. .-.|.. +....++ +. ..
T Consensus 26 l~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~ 105 (333)
T 3io5_A 26 MQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLD 105 (333)
T ss_dssp BCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHH
T ss_pred CcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHH
Confidence 3444 5789999999999988776543 56788887653211 111211 1122222 22 22
Q ss_pred --HhcCCeEEEEcCcchhhhhcCCCCCCCC----chHHHHHHHHHHHhhhcCCCCCcEEEEec
Q 047690 415 --RQCAPSIIFIDEIDAIGRARGRGGFSGA----NDERESTLNQLLVEMDGFGTTAGVVVIAG 471 (811)
Q Consensus 415 --~~~aP~ILfIDEIDaL~~~r~~~~~~~~----~~e~~~tLnqLL~emDg~~~~~~VIVIaa 471 (811)
+...|.+|+||-|.++.++..-.+..+. +..+.+.+++.|..+..+....++.||.+
T Consensus 106 ~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 106 AIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp TCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 4557999999999999753221111111 01244566777766655544555555543
No 132
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.18 E-value=0.00057 Score=73.36 Aligned_cols=110 Identities=18% Similarity=0.249 Sum_probs=63.0
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc---------------C----CCeEEeechhh--hh----h--hhcC----------
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES---------------G----VPFLSISGSDF--ME----M--FVGV---------- 402 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~---------------g----vpfi~vs~s~~--~~----~--~vG~---------- 402 (811)
.-++|+||||+|||+||..+|..+ + .++++++...- .+ . -.|.
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~ 178 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTF 178 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCEE
Confidence 347999999999999999998753 2 56777776542 11 0 0111
Q ss_pred -----chhH----HHHHHHHHHh-cCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEec
Q 047690 403 -----GPSR----VRNLFQEARQ-CAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAG 471 (811)
Q Consensus 403 -----~~~~----vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaa 471 (811)
.... +..+....+. ..+.+|+||.+..+......+. +...++...+.+++..+..+....++.||.+
T Consensus 179 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~--~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~ 255 (322)
T 2i1q_A 179 VARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGR--GKLAERQQKLGRHMATLNKLADLFNCVVLVT 255 (322)
T ss_dssp EEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCT--TSHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 1111 1223333444 5688999999999975422110 1112333456666666655544445555554
No 133
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.16 E-value=0.0035 Score=77.98 Aligned_cols=170 Identities=11% Similarity=0.108 Sum_probs=96.4
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---C----CCeEEeechh-
Q 047690 323 VYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---G----VPFLSISGSD- 394 (811)
Q Consensus 323 v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---g----vpfi~vs~s~- 394 (811)
.....++|.++..++|.+.+..-. .-++-+.|+|+.|+|||+||+.+++.. . ..++.++.+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 345578999998888888764211 123457899999999999999998752 1 1233444322
Q ss_pred ----hh----h---hhh---------cCchhHHHHHHHHHHhc--CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHH
Q 047690 395 ----FM----E---MFV---------GVGPSRVRNLFQEARQC--APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQ 452 (811)
Q Consensus 395 ----~~----~---~~v---------G~~~~~vr~lF~~A~~~--aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnq 452 (811)
.. . ... ......+...+...... .+.+|+||+++...
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------- 249 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------- 249 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------------------
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------------------
Confidence 11 0 000 01122333333333232 37899999997541
Q ss_pred HHHhhhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccC-CCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCC
Q 047690 453 LLVEMDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDK-PDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTP 531 (811)
Q Consensus 453 LL~emDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~-Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~ 531 (811)
.++.+. .+..||.||..+..... .. .....+.++. .+.++-.++|..+..... ........+|++.+.
T Consensus 250 ---~~~~~~--~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~--~~~~~~~~~i~~~~~ 318 (1249)
T 3sfz_A 250 ---VLKAFD--NQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKK--EDLPAEAHSIIKECK 318 (1249)
T ss_dssp ---HHTTTC--SSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCS--TTCCTHHHHHHHHTT
T ss_pred ---HHHhhc--CCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCCh--hhCcHHHHHHHHHhC
Confidence 112222 23356666665433221 11 2345677775 788888889987774322 122223577888888
Q ss_pred CCc
Q 047690 532 GFA 534 (811)
Q Consensus 532 GfS 534 (811)
|..
T Consensus 319 glP 321 (1249)
T 3sfz_A 319 GSP 321 (1249)
T ss_dssp TCH
T ss_pred CCH
Confidence 764
No 134
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.15 E-value=0.0034 Score=70.85 Aligned_cols=70 Identities=20% Similarity=0.176 Sum_probs=47.9
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh----------h------h---hcCc-hhHHHHHHHHH
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME----------M------F---VGVG-PSRVRNLFQEA 414 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~----------~------~---vG~~-~~~vr~lF~~A 414 (811)
.|.-++++|++|+||||++..+|..+ |..+..+++..+.. . + .+.. ...+++.+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 36678999999999999999998754 66676666543210 0 1 1111 22345677777
Q ss_pred HhcCCeEEEEcCc
Q 047690 415 RQCAPSIIFIDEI 427 (811)
Q Consensus 415 ~~~aP~ILfIDEI 427 (811)
+...+.+|+||..
T Consensus 179 ~~~~~DvVIIDTa 191 (443)
T 3dm5_A 179 KSKGVDIIIVDTA 191 (443)
T ss_dssp HHTTCSEEEEECC
T ss_pred HhCCCCEEEEECC
Confidence 7777889999986
No 135
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.12 E-value=0.0011 Score=68.76 Aligned_cols=41 Identities=32% Similarity=0.440 Sum_probs=34.5
Q ss_pred CCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 356 AKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 356 ~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
...|.-++|.|+||+||||+|+.++..++.+++.+++..+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 34566799999999999999999999998777778877663
No 136
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.12 E-value=0.00088 Score=74.81 Aligned_cols=113 Identities=20% Similarity=0.220 Sum_probs=61.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc---------CCCeEEeechhhh--------hhhhcCc---------------hhH-
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES---------GVPFLSISGSDFM--------EMFVGVG---------------PSR- 406 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~---------gvpfi~vs~s~~~--------~~~vG~~---------------~~~- 406 (811)
.-++|+||||+|||+|++.++-.. +...++++..+.. ...+|.. ...
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~ 258 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQ 258 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChHHH
Confidence 348899999999999999776332 2347777764410 0011111 111
Q ss_pred ---HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCC
Q 047690 407 ---VRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNR 474 (811)
Q Consensus 407 ---vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~ 474 (811)
+..+........|.+|+||++-.+.+..-.+ .+...++.+.+.+++..+..+....++.||.++..
T Consensus 259 ~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg--~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 259 LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG--RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETGGGGCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCceEEecchhhhCchhhcC--ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 1222233344679999999998876432111 01223344455555555555444445666666553
No 137
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.10 E-value=0.0002 Score=71.26 Aligned_cols=30 Identities=17% Similarity=0.048 Sum_probs=22.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc---CCCeEEe
Q 047690 361 GALLVGPPGTGKTLLAKATAGES---GVPFLSI 390 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~---gvpfi~v 390 (811)
-++++||||+|||+++..++..+ +.+++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 36899999999999997666543 5555544
No 138
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.10 E-value=0.00025 Score=69.23 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=32.6
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhhhhc
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVG 401 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~~vG 401 (811)
++.|+|+||||||||++++.+|..++.+++.. .++.....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~--d~~~~~~~g 45 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS--DKEIEKRTG 45 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH--HHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHHcC
Confidence 56799999999999999999999999988754 444443333
No 139
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.06 E-value=0.0033 Score=63.53 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeech
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGS 393 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s 393 (811)
..-++|+||||+|||+|+..++... +.++++++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3447999999999999998887643 5677777653
No 140
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.06 E-value=0.0034 Score=64.80 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=26.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeec
Q 047690 361 GALLVGPPGTGKTLLAKATAGES---GVPFLSISG 392 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~ 392 (811)
.+++.|+||+|||+++-.+|..+ |..++.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 58999999999999999998765 666665544
No 141
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.06 E-value=0.0014 Score=74.05 Aligned_cols=124 Identities=16% Similarity=0.278 Sum_probs=67.3
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CC-CeEEeechhh-
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GV-PFLSISGSDF- 395 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gv-pfi~vs~s~~- 395 (811)
.+.+|+++- ++.++.+..++.++...+ ..++|.|+||||||+++.+++..+ +. .++.+..+.-
T Consensus 19 ~p~~~~~Ln--~~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~A 86 (459)
T 3upu_A 19 SHMTFDDLT--EGQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAA 86 (459)
T ss_dssp --CCSSCCC--HHHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHH
T ss_pred CCCccccCC--HHHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHH
Confidence 356788774 344444444444443321 268999999999999999998765 33 4444433221
Q ss_pred ---hhhhhcCchhHHHHHHHHH----------------HhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHh
Q 047690 396 ---MEMFVGVGPSRVRNLFQEA----------------RQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVE 456 (811)
Q Consensus 396 ---~~~~vG~~~~~vr~lF~~A----------------~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~e 456 (811)
+....+.....+..++... ......+|+|||+..+. ...+..|+..
T Consensus 87 a~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~---------------~~~~~~l~~~ 151 (459)
T 3upu_A 87 KKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYD---------------RKLFKILLST 151 (459)
T ss_dssp HHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCC---------------HHHHHHHHHH
T ss_pred HHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCC---------------HHHHHHHHHh
Confidence 1112233333344443311 00124699999998762 1234444444
Q ss_pred hhcCCCCCcEEEEecCCC
Q 047690 457 MDGFGTTAGVVVIAGTNR 474 (811)
Q Consensus 457 mDg~~~~~~VIVIaaTN~ 474 (811)
+. ....+++++-.+.
T Consensus 152 ~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 152 IP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp SC---TTCEEEEEECTTS
T ss_pred cc---CCCEEEEECCHHH
Confidence 43 3456777775554
No 142
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.06 E-value=0.0046 Score=71.38 Aligned_cols=167 Identities=13% Similarity=0.130 Sum_probs=89.4
Q ss_pred ccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHH----hcCCC-----eEEeech---hhh
Q 047690 329 AGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAG----ESGVP-----FLSISGS---DFM 396 (811)
Q Consensus 329 ~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~----e~gvp-----fi~vs~s---~~~ 396 (811)
+|.++.+++|.+.+..-. ...++-|.|+|++|+|||+||+.+++ ..... ++.++.. +..
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 499988888888774211 11235688999999999999999996 23222 2333321 111
Q ss_pred -------hhhhcC------------chhHHHHHHHHHHhcC-CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHh
Q 047690 397 -------EMFVGV------------GPSRVRNLFQEARQCA-PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVE 456 (811)
Q Consensus 397 -------~~~vG~------------~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~e 456 (811)
...... ....+...+....... +++|+||+++... .. .+. .
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~----------------~~--~~~-~ 262 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE----------------TI--RWA-Q 262 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH----------------HH--HHH-H
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch----------------hh--ccc-c
Confidence 111110 0112333444443443 7999999997641 11 111 1
Q ss_pred hhcCCCCCcEEEEecCCCCcccchhhcCCCCcceeeeccCCCHHHHHHHHHHHHhhccCCCCCchhhhHHHhhCCCC
Q 047690 457 MDGFGTTAGVVVIAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQVYLKKIKLDHEPSYYSQRLAALTPGF 533 (811)
Q Consensus 457 mDg~~~~~~VIVIaaTN~pd~LDpALlRpGRFdr~I~v~~Pd~~eR~eIL~~~l~~~~l~~~~d~~l~~LA~~t~Gf 533 (811)
. .+..||.||....... .. +..+..+.++..+.++-.++|..+................|++.+.|.
T Consensus 263 ~------~gs~ilvTTR~~~v~~-~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl 329 (549)
T 2a5y_B 263 E------LRLRCLVTTRDVEISN-AA---SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN 329 (549)
T ss_dssp H------TTCEEEEEESBGGGGG-GC---CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC
T ss_pred c------CCCEEEEEcCCHHHHH-Hc---CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC
Confidence 1 3345666666432211 11 123456889999999988888877432211011111235566666654
No 143
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.02 E-value=0.0031 Score=61.34 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=29.3
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
|.-|+|+|+||+||||+|+.++..++.+++ +..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~ 38 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELL 38 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 456899999999999999999999987664 444544
No 144
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.01 E-value=0.00078 Score=71.63 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=42.1
Q ss_pred hHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 332 DEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 332 eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
++..+.+.+++..+... ......|.-++|+||||+||||+|+.++.+.+..++.|++..+..
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 71 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHH
Confidence 44455555555543221 112344667899999999999999999998865677888766543
No 145
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.95 E-value=0.002 Score=66.35 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=43.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechh---h---hhhhhcCc-----hhHHHHHHHHHHh----cCCeEEE
Q 047690 362 ALLVGPPGTGKTLLAKATAGES---GVPFLSISGSD---F---MEMFVGVG-----PSRVRNLFQEARQ----CAPSIIF 423 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~---~---~~~~vG~~-----~~~vr~lF~~A~~----~aP~ILf 423 (811)
++++||||+|||+++..++..+ +..++.+.... . +....|.. .....++++.++. ..+.+|+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvVi 94 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIG 94 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEE
Confidence 5789999999999998887765 66666664322 1 00111211 1123456666655 2478999
Q ss_pred EcCcchh
Q 047690 424 IDEIDAI 430 (811)
Q Consensus 424 IDEIDaL 430 (811)
|||+..+
T Consensus 95 IDEaQ~l 101 (223)
T 2b8t_A 95 IDEVQFF 101 (223)
T ss_dssp ECSGGGS
T ss_pred EecCccC
Confidence 9999876
No 146
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.94 E-value=0.00043 Score=68.89 Aligned_cols=38 Identities=37% Similarity=0.499 Sum_probs=31.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM 398 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~~ 398 (811)
.+.++|+||||+||||++++||+.++.+++.. .++...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~--d~~~~~ 62 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL--DWYIEE 62 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH--HHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc--hHHHHH
Confidence 45689999999999999999999999988644 444433
No 147
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.93 E-value=0.00058 Score=66.75 Aligned_cols=33 Identities=39% Similarity=0.579 Sum_probs=28.7
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEE
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGESGVPFLS 389 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~ 389 (811)
..|.-|+|+|+||+||||+++.++..++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 345668999999999999999999999988765
No 148
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.88 E-value=0.0007 Score=71.06 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=20.6
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.-++|+||||+|||+|++.++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 347899999999999999998643
No 149
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.85 E-value=0.0062 Score=70.73 Aligned_cols=74 Identities=15% Similarity=0.292 Sum_probs=55.0
Q ss_pred eEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc--ccchhhcCCCCcceeeeccCC
Q 047690 420 SIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD--ILDKALLRPGRFDRQITIDKP 497 (811)
Q Consensus 420 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd--~LDpALlRpGRFdr~I~v~~P 497 (811)
.+|+|||++.+.... ..+....+.++..+ ....+|.+|.+|.+|. .|+..++. -|...|.+...
T Consensus 345 ivvVIDE~~~L~~~~--------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~ 410 (574)
T 2iut_A 345 IVVVVDEFADMMMIV--------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVS 410 (574)
T ss_dssp EEEEESCCTTHHHHT--------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCS
T ss_pred EEEEEeCHHHHhhhh--------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcC
Confidence 589999999886432 12344455555443 3456899999999998 78888887 78888999999
Q ss_pred CHHHHHHHHH
Q 047690 498 DIKGRDQIFQ 507 (811)
Q Consensus 498 d~~eR~eIL~ 507 (811)
+..+-..||.
T Consensus 411 s~~Dsr~ILd 420 (574)
T 2iut_A 411 SKIDSRTILD 420 (574)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 9888877764
No 150
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.83 E-value=0.0029 Score=72.77 Aligned_cols=75 Identities=16% Similarity=0.334 Sum_probs=52.2
Q ss_pred Ce-EEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc--ccchhhcCCCCcceeeecc
Q 047690 419 PS-IIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD--ILDKALLRPGRFDRQITID 495 (811)
Q Consensus 419 P~-ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd--~LDpALlRpGRFdr~I~v~ 495 (811)
|. +|+|||...+.... ..+....+..+... ....++.+|.+|.+|+ .++..++. .|...|.+.
T Consensus 297 P~ivlvIDE~~~ll~~~--------~~~~~~~l~~Lar~----gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lr 362 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV--------GKKVEELIARLAQK----ARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFT 362 (512)
T ss_dssp CEEEEEEETHHHHHHHH--------HHHHHHHHHHHHHH----CGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEEC
T ss_pred CcEEEEEeCHHHHHhhh--------hHHHHHHHHHHHHH----hhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEE
Confidence 54 89999998875421 12233334443332 2345888899999987 58887777 788888999
Q ss_pred CCCHHHHHHHHH
Q 047690 496 KPDIKGRDQIFQ 507 (811)
Q Consensus 496 ~Pd~~eR~eIL~ 507 (811)
..+..+...|+.
T Consensus 363 v~s~~dsr~ilg 374 (512)
T 2ius_A 363 VSSKIDSRTILD 374 (512)
T ss_dssp CSSHHHHHHHHS
T ss_pred cCCHHHHHHhcC
Confidence 999888888764
No 151
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.83 E-value=0.00076 Score=65.96 Aligned_cols=38 Identities=37% Similarity=0.552 Sum_probs=31.9
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
+.-+.|.||||+||||+++.|++..+.+.+.++..++.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 46 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence 34588999999999999999999887788888776653
No 152
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.82 E-value=0.00069 Score=64.72 Aligned_cols=31 Identities=26% Similarity=0.211 Sum_probs=27.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEee
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSIS 391 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs 391 (811)
-|+|.||||+||||+++.|+..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998886544
No 153
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.81 E-value=0.00062 Score=66.40 Aligned_cols=36 Identities=36% Similarity=0.541 Sum_probs=29.7
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
.-|+|+|+||+|||++|+.|+..++.+++. ..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id--~D~~~~ 38 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD--TDVAIE 38 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE--HHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe--CchHHH
Confidence 348999999999999999999999998764 444433
No 154
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.80 E-value=0.0016 Score=66.03 Aligned_cols=34 Identities=32% Similarity=0.326 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHh----cCCCeEEeec
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGE----SGVPFLSISG 392 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e----~gvpfi~vs~ 392 (811)
..-++|+|+||+|||+||..+|.. .+.++++++.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 344899999999999999887643 3677877764
No 155
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.77 E-value=0.002 Score=68.01 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeec
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES----GVPFLSISG 392 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~ 392 (811)
..-++|.||||+|||+|++.+|... |.++++++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3347899999999999999998864 446666543
No 156
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.77 E-value=0.00085 Score=64.57 Aligned_cols=36 Identities=25% Similarity=0.510 Sum_probs=29.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
+..+.|+||||+||||+++.+|+.++.+++ ++.++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i--d~d~~~ 39 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY--DSDQEI 39 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE--EHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE--eccHHH
Confidence 346899999999999999999999887654 444443
No 157
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.75 E-value=0.0017 Score=70.53 Aligned_cols=36 Identities=33% Similarity=0.531 Sum_probs=30.8
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeech
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGS 393 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s 393 (811)
.++.++|+||+|||||++++.||..++.+++.++.-
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 345789999999999999999999999888777544
No 158
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.75 E-value=0.00068 Score=66.01 Aligned_cols=32 Identities=41% Similarity=0.718 Sum_probs=28.1
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
++.|+|+|+||+|||+++++++..++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45699999999999999999999998877643
No 159
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.74 E-value=0.00086 Score=65.05 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=28.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
.++|.||||+||||+|++||..++.+++. ..++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d--~d~~~ 39 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD--SDFLI 39 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE--HHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc--ccHHH
Confidence 58999999999999999999999987764 44443
No 160
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.68 E-value=0.0022 Score=66.84 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=32.7
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh---cCCCeEEeechhhhhh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE---SGVPFLSISGSDFMEM 398 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e---~gvpfi~vs~s~~~~~ 398 (811)
.-|+|+|+||+||||+|+.++.. .|.+++.++...+...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~ 46 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRES 46 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHH
Confidence 45899999999999999999997 7888887777666543
No 161
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.66 E-value=0.0011 Score=65.81 Aligned_cols=34 Identities=38% Similarity=0.560 Sum_probs=29.0
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
..|.-|+|+|+||+||||+|+.|+..++.+++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3455689999999999999999999999886544
No 162
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.64 E-value=0.00091 Score=65.78 Aligned_cols=31 Identities=42% Similarity=0.635 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHh-cCCCeEE
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGE-SGVPFLS 389 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e-~gvpfi~ 389 (811)
+..++|+|+||||||++++.+|.. ++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 345899999999999999999998 6766654
No 163
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.61 E-value=0.0009 Score=64.41 Aligned_cols=35 Identities=34% Similarity=0.612 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHH-hcCCCeEEeechhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAG-ESGVPFLSISGSDF 395 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~-e~gvpfi~vs~s~~ 395 (811)
|.-|+|.|+||+||||+|+.++. ..+ +..++...+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d~~ 37 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDY 37 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHHHH
Confidence 45689999999999999999998 455 444444443
No 164
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.60 E-value=0.0013 Score=63.97 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=29.8
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
.++-|+|+|+||+||||+++.++..++.+++. ..++.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~--~d~~~ 41 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLS--AGDLL 41 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEE--HHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEee--HHHHH
Confidence 45678999999999999999999998866554 44443
No 165
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.60 E-value=0.0013 Score=63.32 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=28.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
..++|+|+|||||||+++.||..++.|++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4689999999999999999999999998753
No 166
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.58 E-value=0.00095 Score=63.38 Aligned_cols=29 Identities=34% Similarity=0.564 Sum_probs=25.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
-|+|+||||+||||+|+.+ ...+.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888886654
No 167
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.58 E-value=0.0012 Score=68.74 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=28.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeec
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISG 392 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~ 392 (811)
-++|+||||||||++|++||+..+.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 37899999999999999999999998887654
No 168
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.56 E-value=0.0013 Score=63.98 Aligned_cols=19 Identities=37% Similarity=0.649 Sum_probs=16.7
Q ss_pred cEEEEcCCCCCHHHHHHHH
Q 047690 361 GALLVGPPGTGKTLLAKAT 379 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAl 379 (811)
-+.|.||+|+|||||++++
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999999953
No 169
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.56 E-value=0.009 Score=63.81 Aligned_cols=92 Identities=15% Similarity=0.126 Sum_probs=51.4
Q ss_pred hHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeechhhh-------hhh-
Q 047690 332 DEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSISGSDFM-------EMF- 399 (811)
Q Consensus 332 eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~s~~~-------~~~- 399 (811)
+.+++.+.+.+..+-.+..-..+ ...+.-++|+||+|+||||++..+|..+ |..+..+++..+. ..+
T Consensus 79 ~~~~~~~~~~l~~~l~~~~~~~~-~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~ 157 (296)
T 2px0_A 79 ENVVGKLQEILCDMLPSADKWQE-PIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYA 157 (296)
T ss_dssp TTHHHHHHHHHHTTSCCGGGSCC-CCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccc-cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHH
Confidence 34555565554443222211011 1235668899999999999999998754 5566666653321 111
Q ss_pred --------hcCchhHHHHHHHHHHhcCCeEEEEcC
Q 047690 400 --------VGVGPSRVRNLFQEARQCAPSIIFIDE 426 (811)
Q Consensus 400 --------vG~~~~~vr~lF~~A~~~aP~ILfIDE 426 (811)
.......++..+..+ ..|.+|+||-
T Consensus 158 ~~~gl~~~~~~~~~~l~~al~~~--~~~dlvIiDT 190 (296)
T 2px0_A 158 ELLQAPLEVCYTKEEFQQAKELF--SEYDHVFVDT 190 (296)
T ss_dssp TTTTCCCCBCSSHHHHHHHHHHG--GGSSEEEEEC
T ss_pred HhcCCCeEecCCHHHHHHHHHHh--cCCCEEEEeC
Confidence 111223444444433 5578999993
No 170
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.55 E-value=0.0028 Score=71.52 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=29.1
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeec
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSISG 392 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~ 392 (811)
|.....-++|.|+||+|||+|+..+|..+ +.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 33333448999999999999999998753 568888774
No 171
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.54 E-value=0.0076 Score=62.21 Aligned_cols=29 Identities=38% Similarity=0.525 Sum_probs=23.1
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
...++.| +.|.||+|+|||||++.|++..
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344444 7899999999999999999854
No 172
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.53 E-value=0.0018 Score=64.26 Aligned_cols=31 Identities=32% Similarity=0.687 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEE
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLS 389 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~ 389 (811)
++-|+|+|+||+||||+|+.|++.++.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 5579999999999999999999999877664
No 173
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.52 E-value=0.0012 Score=72.57 Aligned_cols=67 Identities=24% Similarity=0.312 Sum_probs=43.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeec-hhhh---------hhhhcCchhHHHHHHHHHHhcCCeEEEEcC
Q 047690 361 GALLVGPPGTGKTLLAKATAGES----GVPFLSISG-SDFM---------EMFVGVGPSRVRNLFQEARQCAPSIIFIDE 426 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~-s~~~---------~~~vG~~~~~vr~lF~~A~~~aP~ILfIDE 426 (811)
-++|+||+|+||||+++++++.. +..++.+.- .++. ...++.....+...+..|....|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 37899999999999999998865 233333221 1110 001122223456677788888999999999
Q ss_pred c
Q 047690 427 I 427 (811)
Q Consensus 427 I 427 (811)
+
T Consensus 205 p 205 (356)
T 3jvv_A 205 M 205 (356)
T ss_dssp C
T ss_pred C
Confidence 8
No 174
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.52 E-value=0.0042 Score=62.06 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.|.||+|+|||||++.+++..
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhc
Confidence 6899999999999999999865
No 175
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.51 E-value=0.0016 Score=68.44 Aligned_cols=66 Identities=20% Similarity=0.331 Sum_probs=42.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcC----CCeEEeechhh--h---------hhhhcCchhHHHHHHHHHHhcCCeEEEEc
Q 047690 361 GALLVGPPGTGKTLLAKATAGESG----VPFLSISGSDF--M---------EMFVGVGPSRVRNLFQEARQCAPSIIFID 425 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~g----vpfi~vs~s~~--~---------~~~vG~~~~~vr~lF~~A~~~aP~ILfID 425 (811)
-++|+||+|+||||+++++++... ..++ +..... . ...++.....++..+..+....|.+|++|
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 105 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEES
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeC
Confidence 378999999999999999998642 2222 221111 0 00111122345677777777789999999
Q ss_pred Cc
Q 047690 426 EI 427 (811)
Q Consensus 426 EI 427 (811)
|.
T Consensus 106 Ep 107 (261)
T 2eyu_A 106 EM 107 (261)
T ss_dssp CC
T ss_pred CC
Confidence 98
No 176
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.49 E-value=0.0017 Score=62.30 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=28.9
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
+-|+|+|+||+|||++|+.++..++.+++. ..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id--~d~~~ 37 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD--TDIFM 37 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE--HHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc--ccHHH
Confidence 358999999999999999999999987664 34443
No 177
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.48 E-value=0.019 Score=61.76 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh-------hh---h
Q 047690 334 AKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME-------MF---V 400 (811)
Q Consensus 334 ak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~-------~~---v 400 (811)
+++.+.+.+..+-.+..--.+....+.-++|+||+|+||||+++.+|..+ +..+..+++..+.. .+ .
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~ 158 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERV 158 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHc
Confidence 55555554443222221011223445668899999999999999999865 55566555432210 01 0
Q ss_pred c---------CchhH-HHHHHHHHHhcCCeEEEEcCc
Q 047690 401 G---------VGPSR-VRNLFQEARQCAPSIIFIDEI 427 (811)
Q Consensus 401 G---------~~~~~-vr~lF~~A~~~aP~ILfIDEI 427 (811)
+ ..... +.+.+..+....|.+|+||+.
T Consensus 159 gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 159 GATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTA 195 (306)
T ss_dssp TCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred CCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 1 11112 233455566677899999986
No 178
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.45 E-value=0.0014 Score=64.14 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
+.-|+|.|+||+||||+++.+|..++.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45689999999999999999999998776543
No 179
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.44 E-value=0.0013 Score=63.62 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=23.4
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeE
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFL 388 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi 388 (811)
|.-|+|+|+||+||||+|+.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999999887
No 180
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.43 E-value=0.0015 Score=65.48 Aligned_cols=29 Identities=31% Similarity=0.596 Sum_probs=26.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
|+|+||||+||||+|+.|+.+++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999998777654
No 181
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.41 E-value=0.0027 Score=74.00 Aligned_cols=97 Identities=24% Similarity=0.376 Sum_probs=56.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhh----hhhhhcCchhHHHHHHHHH---------HhcCCeEEE
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDF----MEMFVGVGPSRVRNLFQEA---------RQCAPSIIF 423 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~----~~~~vG~~~~~vr~lF~~A---------~~~aP~ILf 423 (811)
..++|+||||||||+++++++..+ +.+++.+..+.- +....+.....+..++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 457999999999999999998754 666665543221 1111222233333333211 011347999
Q ss_pred EcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCC
Q 047690 424 IDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNR 474 (811)
Q Consensus 424 IDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~ 474 (811)
|||+..+. ...+..|+..+ .....+++++-.+.
T Consensus 285 IDEasml~---------------~~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMMG---------------DALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGCC---------------HHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred EcCccCCC---------------HHHHHHHHHhC---cCCCEEEEEecccc
Confidence 99997761 12445555433 34456788876654
No 182
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.39 E-value=0.0015 Score=64.16 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=29.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
+.-|+|+|+||+||||+|+.++..++.+++ +..++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i--~~d~~~ 47 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL--STGELL 47 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHH
Confidence 456899999999999999999999986554 444443
No 183
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.39 E-value=0.0016 Score=65.15 Aligned_cols=29 Identities=31% Similarity=0.532 Sum_probs=26.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
|+|+||||+||||+|+.++.+++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999998877654
No 184
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.38 E-value=0.0021 Score=64.79 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=29.4
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
+.-|+|.|+||+||||+++.||..++.+++. ..+++
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~~~ 39 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLA--TGDML 39 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEE--HHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe--hhHHH
Confidence 4568999999999999999999999876654 44443
No 185
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.37 E-value=0.0018 Score=62.94 Aligned_cols=29 Identities=41% Similarity=0.627 Sum_probs=25.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEE
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLS 389 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~ 389 (811)
-++|+|+||+||||+++.++..++.+++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 48899999999999999999998876543
No 186
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.36 E-value=0.0026 Score=61.79 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=31.5
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDF 395 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~ 395 (811)
+.-+.|+|++|+||||+++.++..+ |.|++.+++..+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 3457899999999999999999987 999998876544
No 187
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.35 E-value=0.0052 Score=69.15 Aligned_cols=38 Identities=24% Similarity=0.149 Sum_probs=29.3
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeec
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSISG 392 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~ 392 (811)
|.....-++|+|+||+|||+||..+|..+ +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 34444458999999999999999987643 668888775
No 188
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.35 E-value=0.0016 Score=65.99 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
+.-|+|.|+||+||||+++.||..++.+++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 45689999999999999999999998766543
No 189
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.32 E-value=0.0025 Score=60.88 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=26.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEE
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLS 389 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~ 389 (811)
.|+|+|+||+|||++|+.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 37899999999999999999999988764
No 190
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.32 E-value=0.0019 Score=62.71 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.8
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcC
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~g 384 (811)
.-|+|+|+||+||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999876
No 191
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.28 E-value=0.013 Score=62.00 Aligned_cols=57 Identities=28% Similarity=0.414 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 408 RNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 408 r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
|-.+..|-...|.+|++||- .++.+......+.+++.++.. ..+..||.+|++.+.+
T Consensus 151 Rv~iAraL~~~P~lLlLDEP-----------ts~LD~~~~~~i~~~l~~l~~---~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 151 RVAIAGVLVMEPKVLILDEP-----------TAGLDPMGVSEIMKLLVEMQK---ELGITIIIATHDIDIV 207 (275)
T ss_dssp HHHHHHHHTTCCSEEEEECT-----------TTTCCHHHHHHHHHHHHHHHH---HHCCEEEEEESCCSSG
T ss_pred HHHHHHHHHcCCCEEEEECc-----------cccCCHHHHHHHHHHHHHHHh---hCCCEEEEEecCHHHH
Confidence 33444455667999999995 335566666667777766531 1145567777766544
No 192
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.28 E-value=0.0035 Score=62.72 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.0
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.|+|+||+|+|||+|++.|..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998754
No 193
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.27 E-value=0.0071 Score=64.94 Aligned_cols=38 Identities=26% Similarity=0.122 Sum_probs=28.8
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeec
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISG 392 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~ 392 (811)
|.....-++|.|+||+|||+||..+|..+ +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 33333448999999999999999998654 467777764
No 194
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.26 E-value=0.002 Score=64.95 Aligned_cols=35 Identities=31% Similarity=0.580 Sum_probs=28.9
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
..|+|.|+||+||||+|+.||..++.+++.+ .+++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~--d~li 40 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST--GDML 40 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH--HHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh--hHHH
Confidence 4589999999999999999999998776644 4444
No 195
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.24 E-value=0.0027 Score=61.63 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=28.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcC---CCeEEeechhhh
Q 047690 361 GALLVGPPGTGKTLLAKATAGESG---VPFLSISGSDFM 396 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~g---vpfi~vs~s~~~ 396 (811)
-|+|.|+||+||||+++.|+..++ .++..++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 478999999999999999999764 446666655543
No 196
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.23 E-value=0.0043 Score=68.41 Aligned_cols=68 Identities=21% Similarity=0.392 Sum_probs=43.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcC----CCeEEeech-hh--------hh-hhhcCchhHHHHHHHHHHhcCCeEEEEc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESG----VPFLSISGS-DF--------ME-MFVGVGPSRVRNLFQEARQCAPSIIFID 425 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~g----vpfi~vs~s-~~--------~~-~~vG~~~~~vr~lF~~A~~~aP~ILfID 425 (811)
..++|+||+|+||||+++++++... ..++.+... ++ +. ..+|.....++..+..+....|.+|++|
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~illd 216 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 216 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEEC
Confidence 3488999999999999999998642 223332211 10 00 0011122344566777777789999999
Q ss_pred Cc
Q 047690 426 EI 427 (811)
Q Consensus 426 EI 427 (811)
|+
T Consensus 217 E~ 218 (372)
T 2ewv_A 217 EM 218 (372)
T ss_dssp CC
T ss_pred CC
Confidence 98
No 197
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.23 E-value=0.0021 Score=63.59 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=29.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
++-|+|+|+||+||||+++.++..++.+++. ..++.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~--~d~~~ 50 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS--AGDLL 50 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEE--HHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe--HHHHH
Confidence 4458999999999999999999999876654 44443
No 198
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.23 E-value=0.0013 Score=72.30 Aligned_cols=54 Identities=15% Similarity=0.299 Sum_probs=38.6
Q ss_pred ccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 329 AGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 329 ~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
+.++.+.+.+.+.+.....+.. ...++|+||||+|||+++++||+.++.+|+.+
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~--------~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l 55 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNY--------RVCVILVGSPGSGKSTIAEELCQIINEKYHTF 55 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCS--------CEEEEEECCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCC--------eeEEEEECCCCCcHHHHHHHHHHHhCCCeeee
Confidence 4456666666666654222211 13589999999999999999999998888653
No 199
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.22 E-value=0.0029 Score=64.51 Aligned_cols=36 Identities=36% Similarity=0.480 Sum_probs=29.3
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
+..|+|.|+|||||||+|+.||..++.+++. ..+++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~li 51 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA--TGDML 51 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE--HHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec--HHHHH
Confidence 3568999999999999999999999977654 44443
No 200
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.21 E-value=0.0021 Score=66.43 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=29.8
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
.|.-|+|+||||+||||+|+.|+..++.+++ +..++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i--s~~~~~ 64 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL--STGDLL 64 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEE--ecHHHH
Confidence 3567899999999999999999999876655 444544
No 201
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.20 E-value=0.0028 Score=61.21 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=27.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDF 395 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~ 395 (811)
.-++|+||||+||||+++.+++.+|.+++ ++.++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 35889999999999999999998876554 44443
No 202
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.20 E-value=0.0059 Score=60.60 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=26.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
-+.|+||+|+||||+++.+++ +|.+++ +..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~ 36 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVVA 36 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHHH
Confidence 478999999999999999998 787776 444443
No 203
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.19 E-value=0.0084 Score=61.61 Aligned_cols=33 Identities=33% Similarity=0.434 Sum_probs=28.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeech
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGS 393 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s 393 (811)
.++|+||+|+|||.+|.+++...+.+++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999998888777777644
No 204
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.18 E-value=0.0024 Score=64.39 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=29.1
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
|.-|+|.||||+||||+++.||..++.++ ++..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~--i~~d~~~ 40 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAH--ISAGDLL 40 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEE--CCHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCce--ecHHHHH
Confidence 45699999999999999999999998655 4444443
No 205
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.18 E-value=0.0032 Score=62.58 Aligned_cols=35 Identities=31% Similarity=0.638 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDF 395 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~ 395 (811)
+.-+.|.||+|+||||+++.|++.+|..+ +++.++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 44588999999999999999999987544 455444
No 206
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.16 E-value=0.01 Score=62.42 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=36.7
Q ss_pred HHHHHHHHhc------CCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcc
Q 047690 408 RNLFQEARQC------APSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDI 477 (811)
Q Consensus 408 r~lF~~A~~~------aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~ 477 (811)
|-.+..|-.. .|.+|++||- .++.+......+..++..+.. ..+..||.+|++.+.
T Consensus 149 Rv~iAraL~~~~~~~~~p~lLllDEP-----------ts~LD~~~~~~i~~~l~~l~~---~~~~tvi~vtHdl~~ 210 (266)
T 4g1u_C 149 RVQLARVLAQLWQPQPTPRWLFLDEP-----------TSALDLYHQQHTLRLLRQLTR---QEPLAVCCVLHDLNL 210 (266)
T ss_dssp HHHHHHHHHHTCCSSCCCEEEEECCC-----------CSSCCHHHHHHHHHHHHHHHH---HSSEEEEEECSCHHH
T ss_pred HHHHHHHHhcccccCCCCCEEEEeCc-----------cccCCHHHHHHHHHHHHHHHH---cCCCEEEEEEcCHHH
Confidence 4455566666 8999999995 345566666677777766532 334567777776443
No 207
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.15 E-value=0.0095 Score=60.82 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcC
Q 047690 361 GALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~g 384 (811)
-+.|.||+|+|||||++++++...
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 377999999999999999998764
No 208
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.14 E-value=0.0022 Score=69.58 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=48.0
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcC--CCeEEeechhhh------hh--hhcCchhHHHHHHHHHHhcCCeEEEEcCcc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESG--VPFLSISGSDFM------EM--FVGVGPSRVRNLFQEARQCAPSIIFIDEID 428 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~g--vpfi~vs~s~~~------~~--~vG~~~~~vr~lF~~A~~~aP~ILfIDEID 428 (811)
..++|.||+|+|||||++++++... .-.+.+....-. .. ++..+..+.+..+..|....|.+|++||.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 3589999999999999999999763 234444432210 00 110134567778888888899999999973
No 209
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.13 E-value=0.016 Score=60.16 Aligned_cols=29 Identities=31% Similarity=0.403 Sum_probs=23.0
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
...++.| +.|.||+|+|||||++.+++..
T Consensus 29 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344444 7799999999999999999854
No 210
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.13 E-value=0.0028 Score=64.91 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=31.0
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
+.|+-|+|.||||+||+|.|+.||..++.+ .++..+++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR 65 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLR 65 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHH
Confidence 345668999999999999999999999865 455566543
No 211
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.10 E-value=0.025 Score=63.70 Aligned_cols=71 Identities=24% Similarity=0.240 Sum_probs=45.1
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhh----------hhhhcC---------ch-hHHHHHHHHH
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFM----------EMFVGV---------GP-SRVRNLFQEA 414 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~----------~~~vG~---------~~-~~vr~lF~~A 414 (811)
.|.-++++||+|+||||++..+|..+ +..+..+++.-+. ....+. .+ ...+..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35668899999999999999998754 6666666653221 011111 11 1123445555
Q ss_pred HhcCCeEEEEcCcc
Q 047690 415 RQCAPSIIFIDEID 428 (811)
Q Consensus 415 ~~~aP~ILfIDEID 428 (811)
....+.+|+||...
T Consensus 176 ~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 176 VKNKMDIIIVDTAG 189 (433)
T ss_dssp TTTTCSEEEEEECC
T ss_pred HhcCCCEEEEECCC
Confidence 55578899999873
No 212
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.08 E-value=0.0044 Score=60.24 Aligned_cols=30 Identities=27% Similarity=0.132 Sum_probs=27.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc---CCCeEEee
Q 047690 362 ALLVGPPGTGKTLLAKATAGES---GVPFLSIS 391 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs 391 (811)
|.|+|+||+||||+++.++..+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999987 88888764
No 213
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.05 E-value=0.021 Score=60.11 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=23.8
Q ss_pred cCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 354 LGAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 354 lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+...++.| +.|.||+|+|||||++.|++..
T Consensus 38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34444554 7899999999999999999854
No 214
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.03 E-value=0.0034 Score=62.95 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=26.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
|+|.|+||+||||+|+.|+..++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999998777554
No 215
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.01 E-value=0.0087 Score=59.15 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=27.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
-|.|+|++|+||||+++.+++ .|++++. ..++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~--~d~~~~ 36 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD--ADKLIH 36 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE--HHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE--ccHHHH
Confidence 478999999999999999999 7866654 445443
No 216
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.96 E-value=0.0059 Score=60.63 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=29.2
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDF 395 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~ 395 (811)
+.-+.|.||+|+||||++++|++.+ |...+.+++.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 4458899999999999999999987 555456665554
No 217
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.95 E-value=0.0043 Score=62.25 Aligned_cols=30 Identities=33% Similarity=0.378 Sum_probs=26.4
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEE
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLS 389 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~ 389 (811)
.-+.|.||+|+||||+++.+++.++++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 358899999999999999999999877654
No 218
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.94 E-value=0.0059 Score=67.71 Aligned_cols=29 Identities=38% Similarity=0.678 Sum_probs=23.1
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
...++.| +.|.||+|+|||||.|+||+..
T Consensus 23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3344444 6799999999999999999843
No 219
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.94 E-value=0.041 Score=55.49 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=46.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeech---------hhhhhhh-----------cCc------hhHHHHHH
Q 047690 361 GALLVGPPGTGKTLLAKATAGES---GVPFLSISGS---------DFMEMFV-----------GVG------PSRVRNLF 411 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s---------~~~~~~v-----------G~~------~~~vr~lF 411 (811)
.+++++++|.|||++|-++|-.+ |..+..+... .+++.+. -.. ....+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 47899999999999999998765 7777766321 2333330 001 23455566
Q ss_pred HHHHhc----CCeEEEEcCcchh
Q 047690 412 QEARQC----APSIIFIDEIDAI 430 (811)
Q Consensus 412 ~~A~~~----aP~ILfIDEIDaL 430 (811)
..+++. ...+|+|||+-..
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~a 132 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYM 132 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHH
T ss_pred HHHHHHHhcCCCCEEEEeCCCcc
Confidence 666553 3689999999654
No 220
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.92 E-value=0.0043 Score=62.88 Aligned_cols=33 Identities=42% Similarity=0.674 Sum_probs=27.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
++|.||||+||+|.|+.||...+++. ++..+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 68899999999999999999998765 4555654
No 221
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.91 E-value=0.012 Score=64.93 Aligned_cols=29 Identities=38% Similarity=0.612 Sum_probs=23.0
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
...++.| +.|.||+|+|||||.|+||+..
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3344444 6799999999999999999843
No 222
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.90 E-value=0.0043 Score=60.85 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=25.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEE
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLS 389 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~ 389 (811)
|.|.|+||+||||+++.|++.++.+++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 7899999999999999999999987664
No 223
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.89 E-value=0.0051 Score=60.55 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=28.5
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc-CCCeEEee
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES-GVPFLSIS 391 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~-gvpfi~vs 391 (811)
+.-|.|.|+||+||||+++.++..+ +.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4558999999999999999999998 57887765
No 224
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.83 E-value=0.0063 Score=59.45 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=26.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc---CCCeEEee
Q 047690 362 ALLVGPPGTGKTLLAKATAGES---GVPFLSIS 391 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs 391 (811)
|.|.|++|+||||+++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6899999999999999999988 99887654
No 225
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.82 E-value=0.0065 Score=59.90 Aligned_cols=30 Identities=37% Similarity=0.603 Sum_probs=27.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
-+.|.|++|+|||++++.+|..++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 578999999999999999999999888753
No 226
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.77 E-value=0.024 Score=62.24 Aligned_cols=22 Identities=41% Similarity=0.669 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.|.||+|+|||||.|+||+..
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6799999999999999999853
No 227
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.77 E-value=0.0054 Score=62.23 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=27.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
|+|.|+||+||||+++.|+..++.++ ++..+++
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~--i~~dd~~ 35 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAH--IESGGIF 35 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE--EchHHHH
Confidence 78999999999999999999998655 4444543
No 228
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.73 E-value=0.031 Score=64.17 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=60.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechh----hhhhh--hc----------------------CchhHHHH
Q 047690 361 GALLVGPPGTGKTLLAKATAGES---GVPFLSISGSD----FMEMF--VG----------------------VGPSRVRN 409 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~----~~~~~--vG----------------------~~~~~vr~ 409 (811)
-++|.||||+|||+|++.+++.. |.+.+++...+ +.... .+ .+....+.
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q~~ 362 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQI 362 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHHHH
Confidence 47899999999999999998754 44555554322 11000 00 12345666
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCC
Q 047690 410 LFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNR 474 (811)
Q Consensus 410 lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~ 474 (811)
++..+....|.+|+||=+-.+-.. .........+..++..+.. .++.||.++..
T Consensus 363 ~~a~~l~~~p~llilDp~~~Ld~~-------~~~~~~~~~i~~ll~~l~~----~g~tvilvsh~ 416 (525)
T 1tf7_A 363 IKSEINDFKPARIAIDSLSALARG-------VSNNAFRQFVIGVTGYAKQ----EEITGLFTNTS 416 (525)
T ss_dssp HHHHHHTTCCSEEEEECHHHHTSS-------SCHHHHHHHHHHHHHHHHH----TTCEEEEEEEC
T ss_pred HHHHHHhhCCCEEEEcChHHHHhh-------CChHHHHHHHHHHHHHHHh----CCCEEEEEECc
Confidence 777777788999999966555211 1112244455556655542 23444444444
No 229
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.72 E-value=0.019 Score=63.19 Aligned_cols=29 Identities=31% Similarity=0.558 Sum_probs=23.3
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
...++.| +.|.||+|+|||||.|+||+..
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3444555 6799999999999999999843
No 230
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.70 E-value=0.016 Score=63.98 Aligned_cols=22 Identities=41% Similarity=0.681 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.|.||+|+|||||.|+||+..
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCcHHHHHHHHHHcCC
Confidence 6799999999999999999854
No 231
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.70 E-value=0.028 Score=60.40 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=23.2
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
...++.| +.|+||+|+|||||++.|++..
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3344444 7899999999999999999854
No 232
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.65 E-value=0.026 Score=62.05 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=22.9
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
...++.| +.|.||+|+|||||.|.||+..
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3344444 6799999999999999999843
No 233
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.62 E-value=0.0098 Score=60.02 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=22.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
++-+.|+||+|+|||+|+++|++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 4558899999999999999999865
No 234
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.61 E-value=0.0076 Score=59.16 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=28.2
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
|.-|.|+|++|+|||++++.|+.. |.+++ +..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~ 42 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALA 42 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHH
Confidence 445889999999999999999998 77765 444544
No 235
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.60 E-value=0.0074 Score=61.91 Aligned_cols=31 Identities=35% Similarity=0.614 Sum_probs=27.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEE
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLS 389 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~ 389 (811)
|.-+.|.||||+||||+++.|+..++...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 5678999999999999999999988876553
No 236
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.60 E-value=0.0089 Score=61.69 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=31.4
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCC--------eEEeechhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVP--------FLSISGSDFM 396 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvp--------fi~vs~s~~~ 396 (811)
|.-|.|+|++|+||||+|+.|+..++.+ +..++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 4568899999999999999999998876 3467777664
No 237
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.56 E-value=0.041 Score=54.07 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=19.7
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e 382 (811)
+.+++.+|+|+|||+++-.++.+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999988877664
No 238
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.54 E-value=0.03 Score=69.29 Aligned_cols=43 Identities=21% Similarity=0.177 Sum_probs=34.0
Q ss_pred ccchHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHh
Q 047690 329 AGCDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 329 ~G~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e 382 (811)
+|.++.+++|.+.+.... ..+-+.|+||.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~d-----------~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELR-----------PAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCC-----------SSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccC-----------CCeEEEEEcCCCccHHHHHHHHHHh
Confidence 899988888888765211 1345889999999999999999863
No 239
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.49 E-value=0.025 Score=59.46 Aligned_cols=38 Identities=29% Similarity=0.498 Sum_probs=28.6
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc-CCCeEEeechhhhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES-GVPFLSISGSDFMEM 398 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~-gvpfi~vs~s~~~~~ 398 (811)
|.-|+|.|+||+||||+|+.++... +. ..++...+...
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~--~~i~~D~~r~~ 40 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGF--YNINRDDYRQS 40 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTE--EEECHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCc--EEecccHHHHH
Confidence 4568999999999999999999864 54 44555555443
No 240
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.48 E-value=0.013 Score=64.63 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 408 RNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 408 r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
|-.+..|....|.||++||- .++.+......+..+|..+.. ..++.||..|+..+
T Consensus 171 RVaIArAL~~~P~lLLlDEP-----------Ts~LD~~~~~~i~~lL~~l~~---~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQA-----------TSALDPATTRSILELLKDINR---RLGLTILLITHEMD 225 (366)
T ss_dssp HHHHHHHTTTCCSEEEEEST-----------TTTSCHHHHHHHHHHHHHHHH---HSCCEEEEEESCHH
T ss_pred HHHHHHHHhcCCCEEEEECC-----------CccCCHHHHHHHHHHHHHHHH---hCCCEEEEEecCHH
Confidence 44444555567999999995 335566666677777776642 23456677777644
No 241
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.48 E-value=0.0038 Score=61.88 Aligned_cols=29 Identities=17% Similarity=-0.009 Sum_probs=24.5
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCe
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPF 387 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpf 387 (811)
+.-|+|+|+|||||||+++.++..++.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 45689999999999999999999875443
No 242
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.46 E-value=0.0087 Score=61.95 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=27.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEE
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLS 389 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~ 389 (811)
|.-+.|.||||+|||++++.||..++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4568999999999999999999999876654
No 243
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.44 E-value=0.011 Score=58.39 Aligned_cols=30 Identities=17% Similarity=0.036 Sum_probs=25.2
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCC--eEE
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVP--FLS 389 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvp--fi~ 389 (811)
.-|+|.|+||+||||+++.|+..++.. ++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 36 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYL 36 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 458899999999999999999988763 544
No 244
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.42 E-value=0.039 Score=67.58 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=54.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh-----cCC--Ce--E----------EeechhhhhhhhcCchhHHHHHHHHHH-hcCC
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE-----SGV--PF--L----------SISGSDFMEMFVGVGPSRVRNLFQEAR-QCAP 419 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e-----~gv--pf--i----------~vs~s~~~~~~vG~~~~~vr~lF~~A~-~~aP 419 (811)
.-++|+||.|+||||+.|.++.- .+. |- . .+...+............++.+...++ ...|
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p 753 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQ 753 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCC
Confidence 34889999999999999998742 122 11 1 111111111111111112222222222 4578
Q ss_pred eEEEEcCcchhhhhcCCCCCCCCchHH-HHHHHHHHHhhhcCCCCCcEEEEecCCCCcccc
Q 047690 420 SIIFIDEIDAIGRARGRGGFSGANDER-ESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILD 479 (811)
Q Consensus 420 ~ILfIDEIDaL~~~r~~~~~~~~~~e~-~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LD 479 (811)
.+|++||.-+ +.+... ......++..+.. ..+..+|.+|+..+...
T Consensus 754 ~LlLLDEP~~-----------GlD~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 754 SLVILDELGR-----------GTSTHDGIAIAYATLEYFIR---DVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp CEEEEESTTT-----------TSCHHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGGG
T ss_pred CEEEEeCCCC-----------CCCHHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHHHH
Confidence 9999999722 334333 3333456655421 23456778888766554
No 245
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.40 E-value=0.012 Score=58.47 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=23.6
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcC
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~g 384 (811)
.++-++|+||||+||||+++.|+..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345689999999999999999999874
No 246
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.35 E-value=0.0093 Score=62.26 Aligned_cols=31 Identities=35% Similarity=0.520 Sum_probs=27.6
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
..+.|+|++|+||||+++.+|+.++.+|+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 4589999999999999999999999877653
No 247
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.34 E-value=0.023 Score=64.75 Aligned_cols=39 Identities=13% Similarity=0.007 Sum_probs=29.6
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeech
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSISGS 393 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~s 393 (811)
|.....-++|.|+||+|||+||..+|..+ +.++++++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 33333448999999999999999988754 5678887753
No 248
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.33 E-value=0.015 Score=58.25 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=28.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhhh
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFME 397 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~~ 397 (811)
-|.|+|++||||||+++.++..+|++++. +.++..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid--~D~~~~ 48 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN--VDRIGH 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE--CcHHHH
Confidence 37899999999999999999988877754 445543
No 249
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.33 E-value=0.0054 Score=60.84 Aligned_cols=26 Identities=15% Similarity=0.081 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcC
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~g 384 (811)
|.-|+|+|+||+||||+++.++..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 250
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.29 E-value=0.026 Score=58.80 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.|.||+|+|||||++.+++..
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7799999999999999999854
No 251
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.27 E-value=0.034 Score=62.77 Aligned_cols=38 Identities=26% Similarity=0.122 Sum_probs=29.1
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeec
Q 047690 355 GAKIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISG 392 (811)
Q Consensus 355 g~~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~ 392 (811)
|.....-++|.|+||+|||+||..+|..+ +.++++++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 33333448999999999999999987754 678887765
No 252
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.26 E-value=0.013 Score=58.64 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=22.0
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcC
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~g 384 (811)
.-+.|.||+|+|||||++.|++.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3477999999999999999999774
No 253
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.23 E-value=0.015 Score=58.30 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcC
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~g 384 (811)
+.-+.|+||+|+||||+++.|++...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34478999999999999999998764
No 254
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.22 E-value=0.048 Score=62.58 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=62.0
Q ss_pred CcEEEEcCCCCCHHHHHHH--HHHhc--CCCeEEeechhhhh------hhhcCc--------------------------
Q 047690 360 KGALLVGPPGTGKTLLAKA--TAGES--GVPFLSISGSDFME------MFVGVG-------------------------- 403 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkA--lA~e~--gvpfi~vs~s~~~~------~~vG~~-------------------------- 403 (811)
.-++|.||+|+|||||++. +++.. +...+++++.+... ..+|..
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~ 119 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVG 119 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSCCS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhhhc
Confidence 3489999999999999999 45533 44566665533100 000000
Q ss_pred ----hhHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 404 ----PSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 404 ----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
...+...........|.+|+|||+-++.+. .+.+......+..++..+.. .++.||.+|++.+.+
T Consensus 120 ~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~------~~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 120 GFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ------YDASSVVRRELFRLVARLKQ----IGATTVMTTERIEEY 188 (525)
T ss_dssp SHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT------TCCHHHHHHHHHHHHHHHHH----HTCEEEEEEECSSSS
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh------cCCHHHHHHHHHHHHHHHHH----CCCEEEEEecCCCCc
Confidence 011222233334456889999999776321 12233445566666666542 245677777776655
No 255
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.21 E-value=0.017 Score=56.42 Aligned_cols=37 Identities=30% Similarity=0.292 Sum_probs=28.6
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDF 395 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~ 395 (811)
+.-++|+|+||+||||+++.++..+ +.++..++...+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 4458899999999999999999876 445666665444
No 256
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.18 E-value=0.05 Score=59.26 Aligned_cols=36 Identities=17% Similarity=0.036 Sum_probs=28.2
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeec
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISG 392 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~ 392 (811)
....-++|.|+||+|||+||..+|..+ +.++.+++.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 333348999999999999999998763 677777764
No 257
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.18 E-value=0.0089 Score=65.17 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=30.0
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSISGSD 394 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~ 394 (811)
+-++|.||+|||||+|+..||..++.+++..+.-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 45899999999999999999999998887765543
No 258
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.14 E-value=0.014 Score=58.41 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEe
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSI 390 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~v 390 (811)
|.-+.|+|++|+|||++++.++..+|.+++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 34589999999999999999999999876543
No 259
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.13 E-value=0.011 Score=63.85 Aligned_cols=37 Identities=32% Similarity=0.489 Sum_probs=30.6
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechh
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSD 394 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~ 394 (811)
.|+-++|+||+|+|||+||..+|...+.++++.+.-.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 3556889999999999999999999987777665543
No 260
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.12 E-value=0.04 Score=64.14 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=24.3
Q ss_pred hcCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 353 DLGAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 353 ~lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.....++.| +.|.||+|+|||||++.+++..
T Consensus 361 ~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 361 HVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334445554 7899999999999999999854
No 261
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.10 E-value=0.083 Score=61.71 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 407 VRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 407 vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
-|-.+..|--..|.|+++||. .++.+...+..+.+.+.++.. +..+|..|++++.+
T Consensus 498 Qrv~iAral~~~p~illlDEp-----------ts~LD~~~~~~i~~~l~~~~~-----~~t~i~itH~l~~~ 553 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEA-----------TSNVDTKTEKSIQAAMWKLME-----GKTSIIIAHRLNTI 553 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCC-----------CTTCCHHHHHHHHHHHHHHHT-----TSEEEEESCCTTHH
T ss_pred HHHHHHHHHhcCCCEEEEECC-----------ccCCCHHHHHHHHHHHHHHcC-----CCEEEEEecCHHHH
Confidence 344555566678999999996 234566666667777666531 34566677876643
No 262
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.10 E-value=0.042 Score=63.25 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=33.2
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEMFV 400 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~~v 400 (811)
|.-|+|+|.||+|||++|+.+|..+ +.+...++..++.....
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~ 79 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAV 79 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhc
Confidence 4458999999999999999999987 55666777777655433
No 263
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.09 E-value=0.016 Score=63.49 Aligned_cols=29 Identities=34% Similarity=0.590 Sum_probs=23.1
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
...++.| +.|.||+|+|||||.|.||+..
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3444444 6799999999999999999843
No 264
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.08 E-value=0.014 Score=58.47 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=30.7
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeechhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES----GVPFLSISGSDFM 396 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~s~~~ 396 (811)
+.-++|.|+||+||||+++.+++.+ |.+++.+++..+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 4458899999999999999999865 5678888765543
No 265
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.08 E-value=0.018 Score=66.21 Aligned_cols=69 Identities=23% Similarity=0.314 Sum_probs=46.4
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcC--CCeEEeechh-hhhh---h--------hcCchhHHHHHHHHHHhcCCeEEEE
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESG--VPFLSISGSD-FMEM---F--------VGVGPSRVRNLFQEARQCAPSIIFI 424 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~g--vpfi~vs~s~-~~~~---~--------vG~~~~~vr~lF~~A~~~aP~ILfI 424 (811)
..+++|+||+|+||||+++++++... ...+.+.... +.-. + ++...-.+.++...+..+.|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 34689999999999999999998763 3355554332 1100 0 0112234566666777789999999
Q ss_pred cCc
Q 047690 425 DEI 427 (811)
Q Consensus 425 DEI 427 (811)
+|+
T Consensus 340 gEi 342 (511)
T 2oap_1 340 GEV 342 (511)
T ss_dssp SCC
T ss_pred CCc
Confidence 997
No 266
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.07 E-value=0.088 Score=53.48 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=17.2
Q ss_pred CcEEEEcCCCCCHHHHHHHHH
Q 047690 360 KGALLVGPPGTGKTLLAKATA 380 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA 380 (811)
+.+++.||+|||||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 468999999999998766554
No 267
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.04 E-value=0.019 Score=73.16 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=25.2
Q ss_pred hhcCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 352 EDLGAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 352 ~~lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.+...+|+| +.|+||+|+|||||++.+.++.
T Consensus 435 ~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred eceEEeecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 3344445554 7899999999999999999876
No 268
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.01 E-value=0.014 Score=58.51 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=25.2
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEE
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLS 389 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~ 389 (811)
|.-|.|+|++|+||||+++.++. +|.+++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 34588999999999999999998 7776554
No 269
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.01 E-value=0.019 Score=56.11 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=26.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
-++|.||+|+||||+++.+++..+. .+.+++.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~~ 38 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDIIN 38 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccchh
Confidence 3689999999999999999985432 3556665553
No 270
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.00 E-value=0.01 Score=58.94 Aligned_cols=33 Identities=33% Similarity=0.337 Sum_probs=25.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc-CCCeEEeechhh
Q 047690 361 GALLVGPPGTGKTLLAKATAGES-GVPFLSISGSDF 395 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~-gvpfi~vs~s~~ 395 (811)
-+.|+|+||+||||+++.+++.+ ++++ ++..++
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~--i~~D~~ 56 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSV--ISQDDF 56 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEE--EEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEE--EeCCcc
Confidence 36799999999999999999987 5444 444443
No 271
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.98 E-value=0.039 Score=60.69 Aligned_cols=28 Identities=43% Similarity=0.646 Sum_probs=22.6
Q ss_pred CCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 356 AKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 356 ~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
..++.| +.|.||+|+|||||.|+||+..
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344444 6799999999999999999853
No 272
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.96 E-value=0.022 Score=63.60 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=28.6
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhh
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDF 395 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~ 395 (811)
.|.-|+|+|+||+||||+|+.++..++.++ ++..++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 356689999999999999999999887554 444443
No 273
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.92 E-value=0.026 Score=66.19 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=19.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e 382 (811)
+-++++||||||||+++.++...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 35899999999999988877643
No 274
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.91 E-value=0.014 Score=60.41 Aligned_cols=28 Identities=36% Similarity=0.407 Sum_probs=25.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeE
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFL 388 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi 388 (811)
-+.|.||+|+||||+++.||..+|.+++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 4789999999999999999999987665
No 275
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.90 E-value=0.017 Score=63.32 Aligned_cols=28 Identities=39% Similarity=0.694 Sum_probs=22.6
Q ss_pred CCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 356 AKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 356 ~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
..++.| +.|.||+|+|||||.|.||+..
T Consensus 21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 21 LKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 344444 6799999999999999999853
No 276
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.87 E-value=0.018 Score=58.67 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=27.1
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEE
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLS 389 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~ 389 (811)
+.-+.|.|++|+|||++++.+++.+|++++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 4458899999999999999999999987654
No 277
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.86 E-value=0.044 Score=56.55 Aligned_cols=33 Identities=33% Similarity=0.612 Sum_probs=27.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
+-|.||||+||||+|+.|+..++++.+. ..+++
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is--~gdll 43 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIS--TGDML 43 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEEC--HHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeee--chHHH
Confidence 4689999999999999999999988764 44443
No 278
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.86 E-value=0.086 Score=61.27 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=23.7
Q ss_pred cCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 354 LGAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 354 lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
....++.| +.|+||+|+|||||++.+++..
T Consensus 360 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 33444444 7899999999999999999854
No 279
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.84 E-value=0.016 Score=57.01 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.1
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.-+.|+||+|+||||+++.|++..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3457899999999999999999876
No 280
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.82 E-value=0.12 Score=50.52 Aligned_cols=17 Identities=41% Similarity=0.405 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCCHHHHH
Q 047690 360 KGALLVGPPGTGKTLLA 376 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LA 376 (811)
+.+++.+|+|+|||+.+
T Consensus 39 ~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAF 55 (207)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 56999999999999863
No 281
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.70 E-value=0.019 Score=56.15 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcC
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~g 384 (811)
+-+.|+||+|+|||||++.|++...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998753
No 282
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.69 E-value=0.073 Score=61.89 Aligned_cols=31 Identities=35% Similarity=0.571 Sum_probs=24.4
Q ss_pred hcCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 353 DLGAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 353 ~lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.....++.| +.|.||+|+|||||++.+++..
T Consensus 361 ~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 361 NINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 334445554 7899999999999999999854
No 283
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.66 E-value=0.15 Score=58.50 Aligned_cols=35 Identities=26% Similarity=0.187 Sum_probs=27.7
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeec
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISG 392 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~ 392 (811)
.|+.|+|+|+||+||||++..||..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45678999999999999999999654 666777766
No 284
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.66 E-value=0.079 Score=57.40 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=22.6
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.|.-+.|.||+|+||||+++.+|+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45568899999999999999999865
No 285
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.63 E-value=0.034 Score=64.92 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=23.1
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
...++.| +.|.||+|+|||||++.+++..
T Consensus 363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3344444 7899999999999999999854
No 286
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.60 E-value=0.079 Score=65.09 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHHH
Q 047690 360 KGALLVGPPGTGKTLLAKATAG 381 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~ 381 (811)
.-++|+||.|+||||+.|.++.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999999953
No 287
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.59 E-value=0.055 Score=53.70 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=28.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDF 395 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~ 395 (811)
.-+.|.||+|+||||+++.+++.+ +.+++.++...+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 447899999999999999999865 666666654443
No 288
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.58 E-value=0.29 Score=56.00 Aligned_cols=25 Identities=36% Similarity=0.365 Sum_probs=21.7
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.-++|.||+|+|||||++.||+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 3347899999999999999999865
No 289
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.55 E-value=0.018 Score=60.72 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
|.-|.|+|++|+||||+|+.++ ++|.++ +++.++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~--id~D~~~ 109 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYI--IDSDHLG 109 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEE--EEHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcE--EehhHHH
Confidence 3458999999999999999999 577665 4555553
No 290
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.49 E-value=0.018 Score=62.90 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=27.0
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEee
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSIS 391 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs 391 (811)
+-|+|.||+|+|||+||+.||..++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 45889999999999999999999986555444
No 291
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.48 E-value=0.038 Score=64.98 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=32.4
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDF 395 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~ 395 (811)
+.-|+|+|+||+||||+|++|+..+ +.+++.++...+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 4558999999999999999999998 999999876554
No 292
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.47 E-value=0.3 Score=48.54 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=32.2
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhcC---CCCCCcEEEEcCCCCCHHHH
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLG---AKIPKGALLVGPPGTGKTLL 375 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg---~~~pkGvLL~GPPGTGKT~L 375 (811)
....+|+++.-.++..+.+.+. -+..+..++... ..-.+.+++.+|+|+|||+.
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred cccCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 3456798886566666655542 133333332211 11125799999999999976
No 293
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.45 E-value=0.23 Score=52.57 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=32.1
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhcCC----CCCCcEEEEcCCCCCHHHHHHHHHH
Q 047690 323 VYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGA----KIPKGALLVGPPGTGKTLLAKATAG 381 (811)
Q Consensus 323 v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~----~~pkGvLL~GPPGTGKT~LAkAlA~ 381 (811)
.+|+++.-.+...+.|.+. -+..+..++.... .-.+.+++.+|+|+|||+.+-..+-
T Consensus 6 ~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 4677775555555555432 1222322222111 1135799999999999987655443
No 294
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.44 E-value=0.024 Score=56.84 Aligned_cols=29 Identities=28% Similarity=0.301 Sum_probs=27.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEE
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLS 389 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~ 389 (811)
-|.|.|++|||||++++.||..+|.+|+-
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 47899999999999999999999999883
No 295
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.43 E-value=0.021 Score=61.67 Aligned_cols=34 Identities=26% Similarity=0.211 Sum_probs=27.8
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeech
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSISGS 393 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s 393 (811)
+-++|.||+|+|||+||..+|...+..+++.+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3478999999999999999999987766655443
No 296
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.29 E-value=0.022 Score=56.01 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-+.|.||+|+|||||++.+++..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999999975
No 297
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.29 E-value=0.031 Score=56.27 Aligned_cols=67 Identities=24% Similarity=0.246 Sum_probs=40.9
Q ss_pred EEEEcCCCCCHH-HHHHHHHH--hcCCCeEEeech---hhhhhh---hcC-----chhHHHHHHHHHHhcCCeEEEEcCc
Q 047690 362 ALLVGPPGTGKT-LLAKATAG--ESGVPFLSISGS---DFMEMF---VGV-----GPSRVRNLFQEARQCAPSIIFIDEI 427 (811)
Q Consensus 362 vLL~GPPGTGKT-~LAkAlA~--e~gvpfi~vs~s---~~~~~~---vG~-----~~~~vr~lF~~A~~~aP~ILfIDEI 427 (811)
.++|||.|+||| .|.+++.+ +.+..++.+... .+.+.. .|. ......++++..+ ...+|+|||+
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlIDEa 100 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGIDEG 100 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEESSG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEEch
Confidence 678999999999 89999876 347777777643 221110 010 0011223333332 3469999999
Q ss_pred chh
Q 047690 428 DAI 430 (811)
Q Consensus 428 DaL 430 (811)
.-+
T Consensus 101 QFf 103 (195)
T 1w4r_A 101 QFF 103 (195)
T ss_dssp GGC
T ss_pred hhh
Confidence 776
No 298
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.29 E-value=0.092 Score=57.75 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=23.0
Q ss_pred hhcCCCCCCc-EEEEcCCCCCHHHHHHHHHHhc
Q 047690 352 EDLGAKIPKG-ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 352 ~~lg~~~pkG-vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
......+..| +.|+||.|+|||+|.++|+..+
T Consensus 52 ~~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 52 TQLELELGGGFCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEEECCSSEEEEEESHHHHHHHHTHHHHHHT
T ss_pred eeEEEecCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 3333444444 5799999999999999995543
No 299
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.29 E-value=0.02 Score=58.04 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCeEEee
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPFLSIS 391 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs 391 (811)
.++++|.||+|+|||+||..++...+ +++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 46799999999999999999998866 555443
No 300
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.26 E-value=0.045 Score=64.19 Aligned_cols=22 Identities=45% Similarity=0.623 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.|.||+|+|||||+++|++..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999999854
No 301
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.21 E-value=0.026 Score=55.36 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.4
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+-+.|.||+|+|||||++.|++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 447899999999999999999875
No 302
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.16 E-value=0.022 Score=56.55 Aligned_cols=25 Identities=36% Similarity=0.321 Sum_probs=22.4
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcC
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~g 384 (811)
.-+.|.||+|+|||||++.+++..+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3478999999999999999999876
No 303
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.16 E-value=0.1 Score=60.33 Aligned_cols=57 Identities=7% Similarity=-0.011 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 406 RVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 406 ~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
+-|-.+..|....|.||++||- .++.+......+..++.++.. ..+..||..|+..+
T Consensus 391 ~QRv~iAraL~~~p~lLlLDEP-----------T~gLD~~~~~~i~~~l~~l~~---~~g~tvi~vsHdl~ 447 (538)
T 3ozx_A 391 LQKLYIAATLAKEADLYVLDQP-----------SSYLDVEERYIVAKAIKRVTR---ERKAVTFIIDHDLS 447 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEEST-----------TTTCCHHHHHHHHHHHHHHHH---HTTCEEEEECSCHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCC-----------ccCCCHHHHHHHHHHHHHHHH---hCCCEEEEEeCCHH
Confidence 4466677777788999999994 335566666666666666531 22345555666543
No 304
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.15 E-value=0.3 Score=51.85 Aligned_cols=35 Identities=31% Similarity=0.189 Sum_probs=26.8
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeec
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISG 392 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~ 392 (811)
.++-+.++|++|+|||++++.+|..+ +..+..+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 34567889999999999999999854 555655554
No 305
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.13 E-value=0.12 Score=58.09 Aligned_cols=71 Identities=21% Similarity=0.255 Sum_probs=46.3
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeechhhhh----------h------hhc---CchhH-HHHHHH
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGES----GVPFLSISGSDFME----------M------FVG---VGPSR-VRNLFQ 412 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~s~~~~----------~------~vG---~~~~~-vr~lF~ 412 (811)
..|+.++++|++|+||||++-.+|..+ |..+..+++.-+.. . +.. ..+.. ++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 346788999999999999999988643 67777777653211 0 000 11222 356666
Q ss_pred HHHhcCCeEEEEcCc
Q 047690 413 EARQCAPSIIFIDEI 427 (811)
Q Consensus 413 ~A~~~aP~ILfIDEI 427 (811)
.++.....+|+||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 666545679999874
No 306
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.09 E-value=0.11 Score=55.98 Aligned_cols=36 Identities=31% Similarity=0.241 Sum_probs=28.2
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeec
Q 047690 357 KIPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISG 392 (811)
Q Consensus 357 ~~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~ 392 (811)
..++-++++||+|+||||++..+|..+ +..+..+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 445668999999999999999998854 556666654
No 307
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.07 E-value=0.1 Score=58.45 Aligned_cols=66 Identities=21% Similarity=0.335 Sum_probs=39.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCC---CeEEeech-hhh-h----hhhc-CchhHHHHHHHHHHhcCCeEEEEcCc
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGV---PFLSISGS-DFM-E----MFVG-VGPSRVRNLFQEARQCAPSIIFIDEI 427 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gv---pfi~vs~s-~~~-~----~~vG-~~~~~vr~lF~~A~~~aP~ILfIDEI 427 (811)
++|+||+|+||||+++++++.... .++.+.-. ++. . ..+. ...-.....+..+....|.++++.||
T Consensus 170 i~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 170 ILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred EEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 689999999999999999997642 33333211 110 0 0000 00012233444555668999999986
No 308
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.06 E-value=0.081 Score=59.49 Aligned_cols=36 Identities=33% Similarity=0.292 Sum_probs=29.0
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeech
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGS 393 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s 393 (811)
.|..++++|+||+||||++.++|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 35679999999999999999999865 4566666654
No 309
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.05 E-value=0.037 Score=55.06 Aligned_cols=25 Identities=40% Similarity=0.664 Sum_probs=21.7
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.+-+.|+||+|+|||||++.+++..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3458999999999999999999865
No 310
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.03 E-value=0.084 Score=61.02 Aligned_cols=33 Identities=33% Similarity=0.511 Sum_probs=25.3
Q ss_pred hhhcCCCCC-Cc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 351 YEDLGAKIP-KG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 351 ~~~lg~~~p-kG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
|+-.+.+.| .| +-|.||+|+|||||+|.|++..
T Consensus 14 f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 444455555 33 6799999999999999999854
No 311
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.02 E-value=0.027 Score=56.98 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=21.7
Q ss_pred hcCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 353 DLGAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 353 ~lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.+...++.| +.|.||+|+|||||++.|++..
T Consensus 15 ~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 15 VPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 334444444 7899999999999999999976
No 312
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.94 E-value=0.093 Score=63.24 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=19.0
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e 382 (811)
..+++.||+|+|||+++..++.+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999987777554
No 313
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.86 E-value=0.094 Score=52.41 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=40.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhh-------hhhhhcCc-----hhHHHHHHHHHHhcCCeEEEEc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDF-------MEMFVGVG-----PSRVRNLFQEARQCAPSIIFID 425 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~-------~~~~vG~~-----~~~vr~lF~~A~~~aP~ILfID 425 (811)
=.+++||+|+|||+.+-.++..+ +..++.+...-. +....|.. .....++++.+.. ...+|+||
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViID 88 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAID 88 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEEE
Confidence 36789999999999888887765 666665532110 00011211 0112345554432 35799999
Q ss_pred Ccchh
Q 047690 426 EIDAI 430 (811)
Q Consensus 426 EIDaL 430 (811)
|+.-+
T Consensus 89 Eaqfl 93 (191)
T 1xx6_A 89 EVQFF 93 (191)
T ss_dssp SGGGS
T ss_pred CCCCC
Confidence 99776
No 314
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.82 E-value=0.17 Score=50.59 Aligned_cols=57 Identities=21% Similarity=0.198 Sum_probs=31.4
Q ss_pred cCCCccccccccch-HhHHHHHHHHHHhcCchhhhhcCC---CCCCcEEEEcCCCCCHHHHHH
Q 047690 319 AKNKVYFRDVAGCD-EAKQEIMEFVHFLKNPRKYEDLGA---KIPKGALLVGPPGTGKTLLAK 377 (811)
Q Consensus 319 ~~~~v~f~dV~G~e-eak~eL~e~v~~Lk~p~~~~~lg~---~~pkGvLL~GPPGTGKT~LAk 377 (811)
+++..+|+|..+.. +..+.+.+. -+..|..++.... .-.+.+++.+|+|+|||+.+-
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 34566788865554 333333331 1333333332211 123579999999999997543
No 315
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.79 E-value=0.13 Score=62.23 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e 382 (811)
.-++|+||.|+||||+.|.++.-
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 35889999999999999999874
No 316
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.71 E-value=0.15 Score=54.39 Aligned_cols=69 Identities=22% Similarity=0.169 Sum_probs=43.7
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhh-----------hh-----hhc---Cchh-HHHHHHHHHH
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFM-----------EM-----FVG---VGPS-RVRNLFQEAR 415 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~-----------~~-----~vG---~~~~-~vr~lF~~A~ 415 (811)
+.-++++|++|+|||+++..+|..+ +..+..+++.-+. +. +.+ ..+. .+++.+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5567889999999999999999765 5666666653211 00 001 1122 2345666665
Q ss_pred hcCCeEEEEcCc
Q 047690 416 QCAPSIIFIDEI 427 (811)
Q Consensus 416 ~~aP~ILfIDEI 427 (811)
.....+|+||=.
T Consensus 178 ~~~~D~ViIDTp 189 (297)
T 1j8m_F 178 SEKMEIIIVDTA 189 (297)
T ss_dssp HTTCSEEEEECC
T ss_pred hCCCCEEEEeCC
Confidence 455679999874
No 317
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.69 E-value=0.04 Score=70.24 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+-|+||+|+|||||++.+.+-.
T Consensus 1108 vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1108 LALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEECCCCChHHHHHHHHhcCc
Confidence 7899999999999999998844
No 318
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.64 E-value=0.57 Score=46.39 Aligned_cols=58 Identities=19% Similarity=0.144 Sum_probs=33.0
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCC---CCCCcEEEEcCCCCCHHHHHHHHHH
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGA---KIPKGALLVGPPGTGKTLLAKATAG 381 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~---~~pkGvLL~GPPGTGKT~LAkAlA~ 381 (811)
..+|+++.-.++..+.|.+. -+..+..++.... .-.+.+++.+|+|+|||+.+-..+-
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH
Confidence 34688876556555555441 1333333322111 0125699999999999986655443
No 319
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.58 E-value=0.093 Score=61.72 Aligned_cols=33 Identities=36% Similarity=0.574 Sum_probs=22.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechh
Q 047690 362 ALLVGPPGTGKTLLAKATAGES---GVPFLSISGSD 394 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~ 394 (811)
.||.||||||||+++-.+...+ +.+++.+..+.
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 5899999999997555443332 56666665543
No 320
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.57 E-value=0.054 Score=59.31 Aligned_cols=69 Identities=22% Similarity=0.375 Sum_probs=44.6
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcC--CCeEEeech-hhh-----hh--hhc-------C-chhHHHHHHHHHHhcCCeE
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESG--VPFLSISGS-DFM-----EM--FVG-------V-GPSRVRNLFQEARQCAPSI 421 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~g--vpfi~vs~s-~~~-----~~--~vG-------~-~~~~vr~lF~~A~~~aP~I 421 (811)
..++|+||+|+|||||++++++... .-.+.+... ++. .. ++. . ....+++.+..+....|..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence 4589999999999999999999763 233444321 110 00 111 0 1224567777777788999
Q ss_pred EEEcCcc
Q 047690 422 IFIDEID 428 (811)
Q Consensus 422 LfIDEID 428 (811)
++++|+.
T Consensus 256 ~l~~e~r 262 (361)
T 2gza_A 256 ILLAELR 262 (361)
T ss_dssp EEESCCC
T ss_pred EEEcCch
Confidence 9999973
No 321
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.55 E-value=0.039 Score=56.60 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=23.7
Q ss_pred CCCCCc--EEEEcCCCCCHHHHHHHHHHhcCCC
Q 047690 356 AKIPKG--ALLVGPPGTGKTLLAKATAGESGVP 386 (811)
Q Consensus 356 ~~~pkG--vLL~GPPGTGKT~LAkAlA~e~gvp 386 (811)
..++.| +-|.||+|+|||||++.+++.+|..
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 344444 6799999999999999999987654
No 322
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.50 E-value=0.074 Score=62.02 Aligned_cols=32 Identities=34% Similarity=0.592 Sum_probs=25.0
Q ss_pred hhcCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 352 EDLGAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 352 ~~lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.....++.| +.|.||+|+|||||++.+++..
T Consensus 361 ~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 361 QDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3444455554 7899999999999999999854
No 323
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.47 E-value=0.33 Score=52.38 Aligned_cols=57 Identities=21% Similarity=0.137 Sum_probs=31.7
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCCC---CCCcEEEEcCCCCCHHHHHHHH
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGAK---IPKGALLVGPPGTGKTLLAKAT 379 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~~---~pkGvLL~GPPGTGKT~LAkAl 379 (811)
...+|+++.-.++..+.|.+. -+..+..++..... -.+.+++.+|+|+|||+.+-..
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~ 78 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIP 78 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHH
Confidence 346799886556555555431 12223322211110 1256999999999999865443
No 324
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.44 E-value=0.12 Score=60.58 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+-|.||+|+|||||.+.|++..
T Consensus 106 ~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 106 LGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCChHHHHHHHHhcCC
Confidence 7799999999999999999854
No 325
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.42 E-value=0.043 Score=58.41 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=28.3
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcCC-----CeEEe-echhh
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESGV-----PFLSI-SGSDF 395 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~gv-----pfi~v-s~s~~ 395 (811)
.|.-|.|.||+|+|||||++.|++.++. +.+.+ +..+|
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 3455789999999999999999987742 33444 66555
No 326
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.41 E-value=0.072 Score=56.97 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=22.4
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.+.-+.|.||+|+||||+++.+|+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34457899999999999999999865
No 327
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.37 E-value=0.22 Score=55.84 Aligned_cols=35 Identities=31% Similarity=0.189 Sum_probs=27.5
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeec
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISG 392 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~ 392 (811)
.|..++++|++|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 45668889999999999999999765 555666554
No 328
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.33 E-value=0.056 Score=53.74 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=28.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeEEeechh
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFLSISGSD 394 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~ 394 (811)
+|++|++|+|||++|..++.. +.|.+++.-+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 88888887644
No 329
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.32 E-value=0.17 Score=57.25 Aligned_cols=40 Identities=28% Similarity=0.412 Sum_probs=30.7
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFMEM 398 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~~ 398 (811)
+.-|+|+|.||+|||++++.++..+ ..+...++..++...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~ 81 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD 81 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhh
Confidence 4568999999999999999999876 456666665554433
No 330
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.25 E-value=0.28 Score=49.78 Aligned_cols=55 Identities=18% Similarity=0.103 Sum_probs=29.4
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhcCC---CCCCcEEEEcCCCCCHHHHHH
Q 047690 321 NKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGA---KIPKGALLVGPPGTGKTLLAK 377 (811)
Q Consensus 321 ~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~---~~pkGvLL~GPPGTGKT~LAk 377 (811)
+-.+|+++.-.++..+.+.+. -+..|..++.... .-.+.+++.+|+|+|||+.+-
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQ--NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 445677765444444444331 1222322222110 012579999999999997643
No 331
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.25 E-value=0.039 Score=61.54 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=27.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeec
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSISG 392 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~ 392 (811)
+-++|.||+|+|||+||..||...+..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 347899999999999999999998876655443
No 332
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.23 E-value=0.041 Score=55.64 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=14.8
Q ss_pred cEEEEcCCCCCHHHHHHHHH-Hhc
Q 047690 361 GALLVGPPGTGKTLLAKATA-GES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA-~e~ 383 (811)
-+.|.||+|+||||+++.|+ +..
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 47899999999999999999 765
No 333
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=93.19 E-value=0.18 Score=50.68 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=30.7
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhcCC---CCCCcEEEEcCCCCCHHHHH
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGA---KIPKGALLVGPPGTGKTLLA 376 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~---~~pkGvLL~GPPGTGKT~LA 376 (811)
.+..+|+++.-.++..+.|.+. -+..+..++.... .-.+.+++.+|+|+|||+.+
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAA--GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 3456798886555555555431 1333333322111 11357999999999999763
No 334
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.14 E-value=0.25 Score=59.52 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e 382 (811)
.-++|+||+|+||||+.|.++.-
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 45789999999999999999863
No 335
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.96 E-value=0.055 Score=55.43 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=26.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEE
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLS 389 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~ 389 (811)
-|.|.|++|||||++++.||..++.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 47899999999999999999999999864
No 336
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.96 E-value=0.038 Score=58.70 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=25.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcC---CCeEEeechhhh
Q 047690 361 GALLVGPPGTGKTLLAKATAGESG---VPFLSISGSDFM 396 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~g---vpfi~vs~s~~~ 396 (811)
-|.|+||+|+||||+|+.++..++ ..+..++..++.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 478999999999999999998765 445666666553
No 337
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.94 E-value=0.05 Score=54.18 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcC
Q 047690 361 GALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~g 384 (811)
-+.|.||+|+|||||+++|++...
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 377999999999999999999864
No 338
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.87 E-value=0.064 Score=51.90 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.|.||.|+|||||+|++++..
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999999986
No 339
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.84 E-value=0.056 Score=52.22 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcC
Q 047690 361 GALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~g 384 (811)
-.+|+||.|+|||+|++||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 357999999999999999988664
No 340
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.79 E-value=0.024 Score=56.14 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=21.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcC
Q 047690 362 ALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~g 384 (811)
|.|.|++|+||||+++.|+..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998874
No 341
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.71 E-value=0.22 Score=59.06 Aligned_cols=18 Identities=50% Similarity=0.684 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCCHHHHH
Q 047690 359 PKGALLVGPPGTGKTLLA 376 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LA 376 (811)
.+.++++||+|+|||+.+
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 567999999999999887
No 342
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.68 E-value=0.1 Score=57.38 Aligned_cols=52 Identities=27% Similarity=0.251 Sum_probs=31.8
Q ss_pred hHhHHHHHHHHHH-hcCchhhhhcC--CCCCCcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 332 DEAKQEIMEFVHF-LKNPRKYEDLG--AKIPKGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 332 eeak~eL~e~v~~-Lk~p~~~~~lg--~~~pkGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.+++.+.+.+.. +........+. ...+.-+.|.||+|+||||+++.||+.+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4455555554443 33221001222 2334458899999999999999999865
No 343
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.62 E-value=0.15 Score=59.86 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.|.||.|+|||||+++|++..
T Consensus 385 ~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 385 IGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7799999999999999999854
No 344
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.61 E-value=0.6 Score=49.82 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCCHHHHHHH
Q 047690 359 PKGALLVGPPGTGKTLLAKA 378 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkA 378 (811)
++.+++.+|+|+|||+.+-.
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~ 63 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSL 63 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 46899999999999986543
No 345
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=92.40 E-value=0.46 Score=49.60 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=25.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEEeec
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLSISG 392 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~ 392 (811)
+.+++.+|+|+|||+.+-..+-+.+...+.+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 468999999999999777666655666665543
No 346
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.32 E-value=0.16 Score=62.45 Aligned_cols=20 Identities=40% Similarity=0.604 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 047690 362 ALLVGPPGTGKTLLAKATAG 381 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~ 381 (811)
+.|.||+|+|||||++.|++
T Consensus 464 v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 464 YGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999994
No 347
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.30 E-value=0.39 Score=55.34 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=31.6
Q ss_pred CCCccccccccchHhHHHHHHHHHH--hcCchhhhhcCC-----CCCCcEEEEcCCCCCHHHH
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHF--LKNPRKYEDLGA-----KIPKGALLVGPPGTGKTLL 375 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~--Lk~p~~~~~lg~-----~~pkGvLL~GPPGTGKT~L 375 (811)
...++|+++........++.+.+.. +..+..++.-.+ ...+.+++..|+|+|||+.
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 4567788876333333444444443 233333322211 1245799999999999984
No 348
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.28 E-value=0.081 Score=56.84 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.8
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
..+.|+||+|+|||||++.|++..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 348899999999999999999976
No 349
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.27 E-value=0.099 Score=53.40 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=24.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcC--CCeEEe
Q 047690 361 GALLVGPPGTGKTLLAKATAGESG--VPFLSI 390 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~g--vpfi~v 390 (811)
-+.|.||||+||||+++.++..++ .+++..
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 477899999999999999999875 455543
No 350
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.24 E-value=0.23 Score=58.76 Aligned_cols=20 Identities=45% Similarity=0.687 Sum_probs=17.3
Q ss_pred CCCcEEEEcCCCCCHHHHHH
Q 047690 358 IPKGALLVGPPGTGKTLLAK 377 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAk 377 (811)
-.+.++++||+|+|||+.+-
T Consensus 45 ~~~~~lv~apTGsGKT~~~~ 64 (715)
T 2va8_A 45 EGNRLLLTSPTGSGKTLIAE 64 (715)
T ss_dssp TTCCEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEcCCCCcHHHHHH
Confidence 35689999999999999874
No 351
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.15 E-value=0.37 Score=47.09 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCCHHHHHH
Q 047690 360 KGALLVGPPGTGKTLLAK 377 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAk 377 (811)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997544
No 352
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.09 E-value=0.086 Score=61.42 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=31.1
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcC----CCeEEeechhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESG----VPFLSISGSDF 395 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~g----vpfi~vs~s~~ 395 (811)
+.-|+|+|+||+||||+|++|+..++ .+++.++...+
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 34588999999999999999999875 78888876554
No 353
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.09 E-value=0.42 Score=45.65 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=20.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-|+|.|++|+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999998754
No 354
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=91.99 E-value=0.15 Score=51.61 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=32.5
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhcC---CCCCCcEEEEcCCCCCHHHHHH
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLG---AKIPKGALLVGPPGTGKTLLAK 377 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg---~~~pkGvLL~GPPGTGKT~LAk 377 (811)
.+..+|+++.=.++..+.|.+. -+..+..++... +.-.+.+++++|+|+|||+.+-
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred CccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 3456799986555555555431 133343333221 1113569999999999997643
No 355
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=91.91 E-value=0.23 Score=61.72 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.8
Q ss_pred CcEEEEcCCCCCHHHHHHHHH
Q 047690 360 KGALLVGPPGTGKTLLAKATA 380 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA 380 (811)
.-++|+||.|+||||+.|.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 458899999999999999983
No 356
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=91.85 E-value=0.56 Score=47.02 Aligned_cols=52 Identities=21% Similarity=0.167 Sum_probs=28.2
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhcC---CCCCCcEEEEcCCCCCHHHHH
Q 047690 323 VYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLG---AKIPKGALLVGPPGTGKTLLA 376 (811)
Q Consensus 323 v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg---~~~pkGvLL~GPPGTGKT~LA 376 (811)
.+|+++.-.+...+.|.+. .+..+..++... +.-.+.+++.+|+|+|||+.+
T Consensus 25 ~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 4577775445555544431 122222222210 011356999999999999853
No 357
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.84 E-value=0.55 Score=50.27 Aligned_cols=56 Identities=21% Similarity=0.194 Sum_probs=30.5
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhcC---CCCCCcEEEEcCCCCCHHHHHHHHH
Q 047690 323 VYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLG---AKIPKGALLVGPPGTGKTLLAKATA 380 (811)
Q Consensus 323 v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg---~~~pkGvLL~GPPGTGKT~LAkAlA 380 (811)
.+|+++.=..+..+.|.+. -+..+..++... ..-.+.+++.+|+|+|||+.+-..+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHH
Confidence 3577765455555555432 123333332211 1113579999999999998764443
No 358
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=91.83 E-value=0.33 Score=52.88 Aligned_cols=32 Identities=38% Similarity=0.469 Sum_probs=25.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeec
Q 047690 361 GALLVGPPGTGKTLLAKATAGES----GVPFLSISG 392 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~ 392 (811)
+++|..|+|+|||+.+-+++... +.+++.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 78999999999999888776554 566666654
No 359
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.80 E-value=0.15 Score=49.14 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=28.8
Q ss_pred chHhHHHHHHHHHHhcCchhhhhcCCCCCCcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 331 CDEAKQEIMEFVHFLKNPRKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 331 ~eeak~eL~e~v~~Lk~p~~~~~lg~~~pkGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.+...+++.+++..+.... ......|+|.|++|+|||+|+.++.+..
T Consensus 26 ~~~l~~~l~~~~~~~~~~~------~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 26 ISQWREWIDEKLGGGSGGG------GSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CHHHHHHHHHHC--------------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhcCCC------CCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455555555544332211 1234469999999999999999998754
No 360
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.80 E-value=0.072 Score=56.83 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=21.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcC
Q 047690 361 GALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~g 384 (811)
-+.|.||+|+|||||++.|++.++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 477999999999999999999765
No 361
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.68 E-value=0.094 Score=59.58 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.++|+||+|+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 37899999999999999887653
No 362
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.60 E-value=0.48 Score=60.24 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=24.2
Q ss_pred hcCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 353 DLGAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 353 ~lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.+...++.| +-|+||+|+|||||++.+++..
T Consensus 408 ~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 408 GLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334444444 7899999999999999999865
No 363
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.59 E-value=0.11 Score=51.63 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcCCCe
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESGVPF 387 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~gvpf 387 (811)
.+|+||.|++|+|||++|.++... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 358999999999999999999874 4433
No 364
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=91.55 E-value=0.28 Score=57.94 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcC---CeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCcccchhhc
Q 047690 407 VRNLFQEARQCA---PSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDILDKALL 483 (811)
Q Consensus 407 vr~lF~~A~~~a---P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~LDpALl 483 (811)
-|-.+..|.... |.||++||- .++.+......+..++.++.. .+..||..|++.+. .
T Consensus 550 qrv~iAraL~~~p~~p~llllDEP-----------t~~LD~~~~~~i~~~l~~l~~----~g~tvi~vtHd~~~-----~ 609 (670)
T 3ux8_A 550 QRVKLAAELHRRSNGRTLYILDEP-----------TTGLHVDDIARLLDVLHRLVD----NGDTVLVIEHNLDV-----I 609 (670)
T ss_dssp HHHHHHHHHHSCCCSCEEEEEEST-----------TTTCCHHHHHHHHHHHHHHHH----TTCEEEEECCCHHH-----H
T ss_pred HHHHHHHHHhhCCCCCcEEEEeCC-----------CCCCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHH-----H
Confidence 344455554444 469999995 335566666667777766642 24556667775432 2
Q ss_pred CCCCcceeeec
Q 047690 484 RPGRFDRQITI 494 (811)
Q Consensus 484 RpGRFdr~I~v 494 (811)
+ ..|+.+.+
T Consensus 610 ~--~~d~i~~l 618 (670)
T 3ux8_A 610 K--TADYIIDL 618 (670)
T ss_dssp T--TCSEEEEE
T ss_pred H--hCCEEEEe
Confidence 3 35666665
No 365
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.34 E-value=0.26 Score=53.55 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=25.0
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEee
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES---GVPFLSIS 391 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs 391 (811)
.-|.|+|+||+|||+|+.+++..+ +..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 458899999999999999998764 55554444
No 366
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=91.30 E-value=0.22 Score=58.97 Aligned_cols=34 Identities=41% Similarity=0.454 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCCHHHHHH-HHHHhc--CCCeEEeec
Q 047690 359 PKGALLVGPPGTGKTLLAK-ATAGES--GVPFLSISG 392 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAk-AlA~e~--gvpfi~vs~ 392 (811)
.+.+++++|+|+|||+.+- ++...+ +...+++..
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P 76 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP 76 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 3579999999999999874 332222 445555543
No 367
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.27 E-value=0.26 Score=55.51 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=19.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
-.++.|+||||||++++.++..
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCCT
T ss_pred EEEEEcCCCCCHHHHHHHHhcc
Confidence 4689999999999999988754
No 368
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.23 E-value=0.19 Score=46.90 Aligned_cols=21 Identities=48% Similarity=0.844 Sum_probs=19.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHH
Q 047690 361 GALLVGPPGTGKTLLAKATAG 381 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~ 381 (811)
-++|.|++|+|||+|++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 479999999999999999975
No 369
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.17 E-value=0.59 Score=53.31 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCCHHHH
Q 047690 359 PKGALLVGPPGTGKTLL 375 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~L 375 (811)
.+.+|+.+|+|+|||+.
T Consensus 111 ~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCccHH
Confidence 45799999999999974
No 370
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.17 E-value=0.2 Score=54.10 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=28.0
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhcCC-----CeEEeechhh
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGESGV-----PFLSISGSDF 395 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~gv-----pfi~vs~s~~ 395 (811)
.|.-+.|.||+|+||||+++.|++.+.. .+..++...+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 3445789999999999999999987642 3444554443
No 371
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.13 E-value=0.085 Score=53.77 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.|.||+|+|||||++++++..
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6799999999999999999865
No 372
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.12 E-value=0.32 Score=61.86 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCccc
Q 047690 406 RVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPDIL 478 (811)
Q Consensus 406 ~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd~L 478 (811)
+-|-.+..|....|.||++||. .++.+.+.+..+.+.+.+... +..||..|++.+.+
T Consensus 1177 ~Qrv~iARal~~~p~iLiLDEp-----------Ts~lD~~~~~~i~~~l~~~~~-----~~tvi~isH~l~~i 1233 (1284)
T 3g5u_A 1177 KQRIAIARALVRQPHILLLDEA-----------TSALDTESEKVVQEALDKARE-----GRTCIVIAHRLSTI 1233 (1284)
T ss_dssp HHHHHHHHHHHHCCSSEEEESC-----------SSSCCHHHHHHHHHHHHHHSS-----SSCEEEECSCTTGG
T ss_pred HHHHHHHHHHHcCCCEEEEeCC-----------cccCCHHHHHHHHHHHHHhCC-----CCEEEEEecCHHHH
Confidence 3444555666667999999996 235566667777777765421 23445556765543
No 373
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.11 E-value=0.087 Score=53.23 Aligned_cols=22 Identities=45% Similarity=0.579 Sum_probs=19.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
-+.|.||+|+|||||++++++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999999975
No 374
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.06 E-value=0.13 Score=50.59 Aligned_cols=25 Identities=28% Similarity=0.108 Sum_probs=21.7
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
..-+.|.|++|+|||+|++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4468899999999999999998764
No 375
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.02 E-value=0.1 Score=53.85 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=21.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.-+.|.||+|+|||||++++++..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999865
No 376
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.98 E-value=0.12 Score=52.49 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcC
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~g 384 (811)
|+-|.|.|++|+||||+++.|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34588999999999999999999983
No 377
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.96 E-value=0.091 Score=53.97 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=23.9
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHHhcC
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~e~g 384 (811)
...++.| +.|.||+|+|||||++.+++...
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3444444 78999999999999999998653
No 378
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.88 E-value=0.28 Score=50.06 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=23.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc---CCCeEEee
Q 047690 362 ALLVGPPGTGKTLLAKATAGES---GVPFLSIS 391 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs 391 (811)
.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3589999999999888887654 66666664
No 379
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=90.85 E-value=0.26 Score=50.06 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=27.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeechhhh
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 396 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s~~~ 396 (811)
.|-|+|..|||||++++.++. +|+|++. +..+.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vid--aD~ia 43 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVD--TDLIA 43 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEE--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEE--CcHHH
Confidence 578999999999999999998 8888764 44443
No 380
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.70 E-value=0.2 Score=54.73 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCCHHHHHHHH
Q 047690 360 KGALLVGPPGTGKTLLAKAT 379 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAl 379 (811)
+.+++.+|+|+|||+.+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 47999999999999854443
No 381
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.61 E-value=0.072 Score=55.08 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=24.6
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc-CCCeE
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES-GVPFL 388 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~-gvpfi 388 (811)
+.-|.|.|++|+||||+++.|+..+ +.+++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 3457899999999999999999988 44443
No 382
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.59 E-value=0.13 Score=55.11 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=20.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-+.|.||+|+|||||++.|++.+
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhc
Confidence 46799999999999999999976
No 383
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=90.52 E-value=0.61 Score=46.27 Aligned_cols=18 Identities=28% Similarity=0.208 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCCHHHHHH
Q 047690 360 KGALLVGPPGTGKTLLAK 377 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAk 377 (811)
+.+++.+|+|+|||+.+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 568999999999998643
No 384
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=90.42 E-value=0.79 Score=51.59 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=23.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc--------CCCeEEeec
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES--------GVPFLSISG 392 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~--------gvpfi~vs~ 392 (811)
+.+++.+|+|+|||..+-..+-+. +..++.+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 63 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 63 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeC
Confidence 468999999999998766554332 455555544
No 385
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.42 E-value=0.15 Score=54.50 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=22.2
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.-+.|.||+|+||||+++.+|+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568899999999999999999865
No 386
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=90.41 E-value=1.2 Score=44.87 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCCHHHHH
Q 047690 360 KGALLVGPPGTGKTLLA 376 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LA 376 (811)
+.+++.+|+|+|||+.+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56899999999999863
No 387
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.37 E-value=0.11 Score=52.74 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.|.||+|+|||||++++++..
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999865
No 388
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=90.28 E-value=0.48 Score=48.17 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCCHHHHHH
Q 047690 360 KGALLVGPPGTGKTLLAK 377 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAk 377 (811)
+.+++.+|+|+|||+.+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 468999999999997543
No 389
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.25 E-value=0.39 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=21.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
..|+|.|.||+|||+|+.++.+..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999999998743
No 390
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.24 E-value=0.11 Score=53.92 Aligned_cols=32 Identities=31% Similarity=0.616 Sum_probs=25.0
Q ss_pred hcCCCCCCc--EEEEcCCCCCHHHHHHHHHHhcC
Q 047690 353 DLGAKIPKG--ALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 353 ~lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~g 384 (811)
.+...++.| +.|.||+|+|||||++++++...
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 334455555 67999999999999999998653
No 391
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.24 E-value=0.11 Score=54.19 Aligned_cols=30 Identities=17% Similarity=0.312 Sum_probs=23.8
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHHhcC
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~e~g 384 (811)
...++.| +.|.||+|+|||||++++++...
T Consensus 26 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 26 SLQARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3444444 67999999999999999998653
No 392
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=90.21 E-value=0.52 Score=54.49 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=31.1
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeechhhhh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVPFLSISGSDFME 397 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~s~~~~ 397 (811)
+.-|+|+|++|+||||+|+.|+..+ |.++..+++..+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~ 413 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRT 413 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhh
Confidence 3458899999999999999999875 56777777665543
No 393
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.20 E-value=0.14 Score=53.13 Aligned_cols=21 Identities=48% Similarity=0.816 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHh
Q 047690 362 ALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e 382 (811)
+.|.||+|+|||||++.+++.
T Consensus 32 ~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 679999999999999999985
No 394
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=90.14 E-value=0.87 Score=51.05 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=23.5
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc--------CCCeEEeec
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES--------GVPFLSISG 392 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~--------gvpfi~vs~ 392 (811)
+.+++.+|+|+|||+.+-..+-+. +..++.+..
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 60 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFAN 60 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 468999999999998766555433 555565544
No 395
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.13 E-value=1.1 Score=46.12 Aligned_cols=66 Identities=23% Similarity=0.204 Sum_probs=35.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHh---cCCCeEEeech-------hhhhhhhcCc-----hhHHHHHHHHHHhcCCeEEEEcC
Q 047690 362 ALLVGPPGTGKTLLAKATAGE---SGVPFLSISGS-------DFMEMFVGVG-----PSRVRNLFQEARQCAPSIIFIDE 426 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e---~gvpfi~vs~s-------~~~~~~vG~~-----~~~vr~lF~~A~~~aP~ILfIDE 426 (811)
.+++||.|+|||+.+-..+.. .+..++.+... .+.+. .|.. -....++++.+ ....+|+|||
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~~di~~~~--~~~dvViIDE 98 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQEA--LGVAVIGIDE 98 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEESS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhh-cCCeeEEEecCCHHHHHHHh--ccCCEEEEEc
Confidence 578999999999766655543 35566555421 11111 1110 00112345544 2357999999
Q ss_pred cchh
Q 047690 427 IDAI 430 (811)
Q Consensus 427 IDaL 430 (811)
+.-+
T Consensus 99 aQF~ 102 (234)
T 2orv_A 99 GQFF 102 (234)
T ss_dssp GGGC
T ss_pred hhhh
Confidence 9776
No 396
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.08 E-value=0.12 Score=53.26 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=23.5
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
...++.| +.|.||+|+|||||++++++..
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444554 7899999999999999999864
No 397
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.06 E-value=0.14 Score=53.65 Aligned_cols=28 Identities=32% Similarity=0.654 Sum_probs=23.0
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHHh
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~e 382 (811)
...++.| +.|.||+|+|||||++.|++.
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3444444 779999999999999999986
No 398
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.05 E-value=0.12 Score=53.14 Aligned_cols=29 Identities=41% Similarity=0.653 Sum_probs=23.3
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
...++.| +.|.||+|+|||||++.+++..
T Consensus 26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344444 6799999999999999999865
No 399
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=89.98 E-value=0.31 Score=54.38 Aligned_cols=33 Identities=33% Similarity=0.434 Sum_probs=28.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCeEEeech
Q 047690 361 GALLVGPPGTGKTLLAKATAGESGVPFLSISGS 393 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~gvpfi~vs~s 393 (811)
.++|++|+|+|||..+-.++...+.+++.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 489999999999999988888888887777654
No 400
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.93 E-value=0.17 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-+.|.|++|+|||+|++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999863
No 401
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.91 E-value=0.16 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-+.|.|++|+|||+|++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 402
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=89.90 E-value=0.78 Score=47.29 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
..|+|.|++|+|||+|+.++.+.-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 403
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.89 E-value=0.13 Score=52.61 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.|.||+|+|||||++.+++..
T Consensus 37 ~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 37 LAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7799999999999999999865
No 404
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.84 E-value=0.49 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-+.|.||||+|||||.+++++..
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 36799999999999999999754
No 405
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.76 E-value=0.19 Score=49.40 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=25.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEee
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES---GVPFLSIS 391 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs 391 (811)
+-+.|.|++|+|||+|+..++..+ +..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 457899999999999999998864 45554444
No 406
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=89.75 E-value=0.77 Score=49.71 Aligned_cols=55 Identities=15% Similarity=0.179 Sum_probs=31.1
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhcCC---CCCCcEEEEcCCCCCHHHHHHH
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGA---KIPKGALLVGPPGTGKTLLAKA 378 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~---~~pkGvLL~GPPGTGKT~LAkA 378 (811)
..+|+++.=.++..+.|.+. -+..|..++.... .-.+.+++.+|+|+|||+.+-.
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~ 93 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSI 93 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHH
Confidence 45788875555555555432 1233333222111 1125699999999999976543
No 407
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.72 E-value=0.15 Score=48.53 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.+|+||.|+|||++..||.--+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999997543
No 408
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.71 E-value=0.27 Score=49.80 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=24.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc---CCCeEEee
Q 047690 361 GALLVGPPGTGKTLLAKATAGES---GVPFLSIS 391 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs 391 (811)
-|.|.|++|+||||+++.++..+ +.+++.+.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 36789999999999999999866 55665543
No 409
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=89.71 E-value=0.6 Score=48.15 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCCHHHHHH
Q 047690 360 KGALLVGPPGTGKTLLAK 377 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAk 377 (811)
+.+++.+|+|+|||+.+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 468999999999998643
No 410
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.66 E-value=0.13 Score=53.79 Aligned_cols=30 Identities=23% Similarity=0.523 Sum_probs=23.8
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHHhcC
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~e~g 384 (811)
...++.| +.|.||+|+|||||++.|++...
T Consensus 44 sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 44 NVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3344444 77999999999999999998653
No 411
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.60 E-value=1.2 Score=45.54 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCCHHHHHH
Q 047690 360 KGALLVGPPGTGKTLLAK 377 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAk 377 (811)
+.+++.+|+|+|||+.+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 579999999999997643
No 412
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.60 E-value=0.14 Score=53.24 Aligned_cols=29 Identities=38% Similarity=0.633 Sum_probs=23.4
Q ss_pred CCCCCc--EEEEcCCCCCHHHHHHHHHHhcC
Q 047690 356 AKIPKG--ALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 356 ~~~pkG--vLL~GPPGTGKT~LAkAlA~e~g 384 (811)
..++.| +.|.||+|+|||||++.+++...
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 344444 77999999999999999998753
No 413
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.48 E-value=0.13 Score=59.60 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=28.9
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcC----CCeEEeechhhh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESG----VPFLSISGSDFM 396 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~g----vpfi~vs~s~~~ 396 (811)
..+.|.|++|+|||||+++||+.++ ..+..+++.++.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 3478999999999999999999874 345556666554
No 414
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.47 E-value=0.17 Score=53.12 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.+.|.||+|+|||||.++|++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999865
No 415
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.40 E-value=0.14 Score=54.01 Aligned_cols=29 Identities=34% Similarity=0.384 Sum_probs=23.3
Q ss_pred CCCCCc--EEEEcCCCCCHHHHHHHHHHhcC
Q 047690 356 AKIPKG--ALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 356 ~~~pkG--vLL~GPPGTGKT~LAkAlA~e~g 384 (811)
..++.| +.|.||+|+|||||++.|++...
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 334444 77999999999999999998653
No 416
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=89.40 E-value=0.99 Score=48.24 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=32.0
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhcCC---CCCCcEEEEcCCCCCHHHHH
Q 047690 320 KNKVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDLGA---KIPKGALLVGPPGTGKTLLA 376 (811)
Q Consensus 320 ~~~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~lg~---~~pkGvLL~GPPGTGKT~LA 376 (811)
+...+|+++.=.+...+.+... -+..+..++.... .-.+.+++.+|+|+|||+.+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHH
T ss_pred cccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH
Confidence 3456799986555555555442 1233332222111 01256999999999999864
No 417
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=89.38 E-value=0.77 Score=49.54 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCCHHHHHH
Q 047690 360 KGALLVGPPGTGKTLLAK 377 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAk 377 (811)
+.+++.+|+|+|||+.+-
T Consensus 78 ~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCEEECCCSCSSSHHHHH
T ss_pred CCEEEECCCCCcccHHHH
Confidence 468999999999998743
No 418
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.38 E-value=0.15 Score=53.27 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=23.5
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
...++.| +.|.||+|+|||||+++|++..
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344444 7799999999999999999865
No 419
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.37 E-value=0.14 Score=53.43 Aligned_cols=30 Identities=37% Similarity=0.451 Sum_probs=24.0
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHHhcC
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAGESG 384 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~e~g 384 (811)
...++.| +.|.||+|+|||||++.|++...
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3444444 78999999999999999998653
No 420
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.34 E-value=0.15 Score=53.39 Aligned_cols=29 Identities=34% Similarity=0.517 Sum_probs=23.5
Q ss_pred CCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 355 GAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 355 g~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
...++.| +.|.||+|+|||||++.|++..
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3444444 6799999999999999999865
No 421
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.18 E-value=0.64 Score=46.95 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
..|+|.|++|+|||+|+.++.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 358999999999999999998743
No 422
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=89.14 E-value=1.5 Score=52.94 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=24.2
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeec
Q 047690 358 IPKGALLVGPPGTGKTLLAKATAGES---GVPFLSISG 392 (811)
Q Consensus 358 ~pkGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~ 392 (811)
.|..+|+.||.|+|||..+-..+-.. +...+.+..
T Consensus 388 ~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 388 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 35678999999999998776544332 555555543
No 423
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.08 E-value=0.16 Score=55.30 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.2
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCC
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVP 386 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvp 386 (811)
.-+.|.||+|+|||||++.|++.....
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 347899999999999999999987543
No 424
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.06 E-value=0.21 Score=57.36 Aligned_cols=26 Identities=12% Similarity=-0.098 Sum_probs=23.7
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCC
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGV 385 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gv 385 (811)
..|+|.|.+||||||++++||..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999874
No 425
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.05 E-value=0.22 Score=46.05 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.+++.|++|+|||+|+.++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998753
No 426
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.97 E-value=1.2 Score=42.91 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.|+|.|++|+|||+|+.++.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 427
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.82 E-value=0.17 Score=53.05 Aligned_cols=29 Identities=31% Similarity=0.606 Sum_probs=23.2
Q ss_pred CCCCC-CcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 355 GAKIP-KGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 355 g~~~p-kGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
...++ .-+.|.||+|+|||||++.+++..
T Consensus 25 sl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 25 NLEVNGEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEECSSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444 237799999999999999999876
No 428
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.77 E-value=0.27 Score=50.40 Aligned_cols=31 Identities=19% Similarity=0.103 Sum_probs=22.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc-------CCCeEEee
Q 047690 361 GALLVGPPGTGKTLLAKATAGES-------GVPFLSIS 391 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~-------gvpfi~vs 391 (811)
-|.|.||+|+||||+++.++..+ +.+++...
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 36788999999999999999876 66665543
No 429
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.76 E-value=0.24 Score=46.07 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.6
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e 382 (811)
..|++.|++|+|||+|+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 430
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=88.71 E-value=1.7 Score=42.50 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
.|+|.|++|+|||+|+.++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 431
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=88.67 E-value=0.89 Score=48.02 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCCHHHHH
Q 047690 359 PKGALLVGPPGTGKTLLA 376 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LA 376 (811)
++.+++++|+|||||+..
T Consensus 131 ~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 468999999999999753
No 432
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=88.65 E-value=0.61 Score=53.77 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=19.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e 382 (811)
+.+||++|+|+|||..+-.++..
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHH
Confidence 46899999999999988777654
No 433
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.65 E-value=1 Score=44.12 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e 382 (811)
..|+|.|++|+|||+|+.++.+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999874
No 434
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=88.65 E-value=1 Score=53.18 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCe--EEEEcCcchhhhhcCCCCCCCCchHHHHHHHHHHHhhhcCCCCCcEEEEecCCCCc
Q 047690 408 RNLFQEARQCAPS--IIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVIAGTNRPD 476 (811)
Q Consensus 408 r~lF~~A~~~aP~--ILfIDEIDaL~~~r~~~~~~~~~~e~~~tLnqLL~emDg~~~~~~VIVIaaTN~pd 476 (811)
|-.+..|....|. +|++||- .++.+......+..++..+.. .+..||..|+..+
T Consensus 210 Rv~iArAL~~~p~~~lLlLDEP-----------tsgLD~~~~~~l~~~l~~l~~----~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 210 RIRLATQIGSRLTGVLYVLDEP-----------SIGLHQRDNDRLIATLKSMRD----LGNTLIVVEHDED 265 (670)
T ss_dssp HHHHHHHHHTCCCSCEEEEECT-----------TTTCCGGGHHHHHHHHHHHHH----TTCEEEEECCCHH
T ss_pred HHHHHHHHhhCCCCCEEEEECC-----------ccCCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHH
Confidence 4445555555677 9999995 234455555666667766642 2445666777644
No 435
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=88.60 E-value=0.66 Score=51.65 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=21.1
Q ss_pred CcEEEEcCCCCCHHHHH-HHHHH---hcCCCeEEee
Q 047690 360 KGALLVGPPGTGKTLLA-KATAG---ESGVPFLSIS 391 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LA-kAlA~---e~gvpfi~vs 391 (811)
+.+|++||+|+|||+.+ -++.. ..+...+.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~ 38 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILA 38 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 46899999999999875 43432 2344444444
No 436
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.59 E-value=0.7 Score=49.86 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.-+.|.|+||+|||+++.+++..+
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 347899999999999999998754
No 437
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.49 E-value=0.25 Score=45.52 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.+++.|++|+|||+|+.++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 438
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.46 E-value=0.28 Score=48.34 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
...++|.|++|+|||+|+.++.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999864
No 439
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.42 E-value=0.22 Score=47.03 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=20.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
-+.|.|++|+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 440
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.32 E-value=0.26 Score=45.49 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
.|++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 441
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.27 E-value=0.23 Score=47.74 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e 382 (811)
...|+|.|++|+|||+|+.++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999864
No 442
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.25 E-value=0.19 Score=48.38 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
-++|.|++|+|||+|++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999999873
No 443
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.18 E-value=1.4 Score=43.08 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
.|+|.|++|+|||+|+..+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999999764
No 444
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=88.15 E-value=1.2 Score=42.95 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e 382 (811)
..|+|.|++|+|||+|+.++.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 445
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=88.08 E-value=0.23 Score=58.27 Aligned_cols=32 Identities=34% Similarity=0.490 Sum_probs=23.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeec
Q 047690 361 GALLVGPPGTGKTLLAKATAGES----GVPFLSISG 392 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~ 392 (811)
-+++.||||||||+++..++..+ +.+++.+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~ 232 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 232 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 46899999999999887776543 445555544
No 446
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.03 E-value=0.14 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.5
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
+.+.|+||+|+|||||++.|++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999875
No 447
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.01 E-value=0.28 Score=45.30 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.6
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e 382 (811)
..|++.|++|+|||+|+.++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 448
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.98 E-value=0.28 Score=45.50 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.|++.|++|+|||+|+.++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 449
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=87.88 E-value=0.4 Score=48.76 Aligned_cols=30 Identities=23% Similarity=0.044 Sum_probs=25.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCeEE
Q 047690 360 KGALLVGPPGTGKTLLAKATAGESGVPFLS 389 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~gvpfi~ 389 (811)
+-|.|.|++|+||||+++.++..++.+...
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~ 35 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKL 35 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccceE
Confidence 347889999999999999999998765433
No 450
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.87 E-value=0.25 Score=46.31 Aligned_cols=22 Identities=50% Similarity=0.762 Sum_probs=20.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
.|+|.|++|+|||+|++++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999864
No 451
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.86 E-value=0.29 Score=45.59 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.|++.|++|+|||+|++++.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 452
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=87.79 E-value=0.42 Score=53.72 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCC
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVP 386 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvp 386 (811)
+.|.||+|+|||+|++.|++.....
T Consensus 160 ~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 160 MGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEEECCCCCCHHHHHHHHhcccCCC
Confidence 7899999999999999999987544
No 453
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=87.77 E-value=0.24 Score=54.99 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=22.2
Q ss_pred CCCCCc--EEEEcCCCCCHHHHHHHHHHh
Q 047690 356 AKIPKG--ALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 356 ~~~pkG--vLL~GPPGTGKT~LAkAlA~e 382 (811)
..++.| +.|.||+|+|||||.++|++.
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 344444 789999999999999999984
No 454
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.69 E-value=0.28 Score=46.90 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
-++|.|++|+|||+|++++++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 455
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=87.67 E-value=0.29 Score=45.49 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
.|++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 456
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.64 E-value=0.31 Score=45.45 Aligned_cols=22 Identities=27% Similarity=0.296 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
.|++.|++|+|||+|+.++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 457
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.59 E-value=0.29 Score=45.58 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
.|++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999873
No 458
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.51 E-value=0.31 Score=45.87 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=20.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
.|++.|++|+|||+|+.++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 459
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=87.47 E-value=1.5 Score=48.99 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCCCHHHHH-HHHHH
Q 047690 359 PKGALLVGPPGTGKTLLA-KATAG 381 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LA-kAlA~ 381 (811)
++.+|+.+|+|+|||+.+ -++..
T Consensus 131 ~~~~l~~a~TGsGKT~~~~l~il~ 154 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAFVLAMLS 154 (479)
T ss_dssp CCEEEEECCSSSSHHHHHHHHHHT
T ss_pred CCcEEEEcCCCCchhHHHHHHHHH
Confidence 467999999999999763 34443
No 460
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.38 E-value=0.23 Score=52.82 Aligned_cols=32 Identities=38% Similarity=0.566 Sum_probs=25.2
Q ss_pred hhcCCCCCCc--EEEEcCCCCCHHHHHHHHHHhc
Q 047690 352 EDLGAKIPKG--ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 352 ~~lg~~~pkG--vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
..+...++.| +.|.||+|+|||||++.|++..
T Consensus 55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3444455555 7899999999999999999864
No 461
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=87.35 E-value=1.1 Score=55.96 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCCHHHHHHHH
Q 047690 360 KGALLVGPPGTGKTLLAKAT 379 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAl 379 (811)
+.+|+++|+|+|||+.+-..
T Consensus 94 ~dvlv~ApTGSGKTl~~l~~ 113 (1104)
T 4ddu_A 94 KSFTMVAPTGVGKTTFGMMT 113 (1104)
T ss_dssp CCEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHHHH
Confidence 46899999999999955443
No 462
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.35 E-value=0.32 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.6
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e 382 (811)
..|++.|++|+|||+|+..+.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 463
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=87.34 E-value=0.84 Score=49.53 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-+.|.|+||+|||||..++++..
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999753
No 464
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=87.33 E-value=0.33 Score=45.06 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=20.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
.|+|.|++|+|||+|+.++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 465
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.28 E-value=0.84 Score=43.72 Aligned_cols=23 Identities=43% Similarity=0.476 Sum_probs=20.6
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e 382 (811)
.-++|.|++|+|||+|.+++.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999865
No 466
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=87.26 E-value=2.5 Score=45.30 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=29.7
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhc-----CCCCCCcEEEEcCCCCCHHHHH
Q 047690 322 KVYFRDVAGCDEAKQEIMEFVHFLKNPRKYEDL-----GAKIPKGALLVGPPGTGKTLLA 376 (811)
Q Consensus 322 ~v~f~dV~G~eeak~eL~e~v~~Lk~p~~~~~l-----g~~~pkGvLL~GPPGTGKT~LA 376 (811)
..+|+++.=.....+.|.+. -+..|..++.. -...++.+++.+|+|+|||+.+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 34677765555555555431 12222222211 1112467999999999999875
No 467
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.23 E-value=0.29 Score=45.66 Aligned_cols=21 Identities=43% Similarity=0.684 Sum_probs=19.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHH
Q 047690 361 GALLVGPPGTGKTLLAKATAG 381 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~ 381 (811)
-|+|.|++|+|||+|+.++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999975
No 468
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=87.12 E-value=2 Score=48.67 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCCHHHHHH
Q 047690 359 PKGALLVGPPGTGKTLLAK 377 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAk 377 (811)
++.+|+.+|+|+|||+.+-
T Consensus 158 ~~~~ll~apTGsGKT~~~~ 176 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFA 176 (508)
T ss_dssp CCCEEEECCSSTTSHHHHH
T ss_pred CCCEEEECCCCccHHHHHH
Confidence 4679999999999998643
No 469
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=87.12 E-value=0.81 Score=57.29 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=22.9
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc---CCCeEEeec
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES---GVPFLSISG 392 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~---gvpfi~vs~ 392 (811)
+.+|+++|+|+|||+.+-..+-.+ +...+++..
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 468999999999998765544333 445555543
No 470
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.10 E-value=0.35 Score=45.57 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
.|+|.|++|+|||+|+.++.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 471
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.09 E-value=0.35 Score=44.86 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
.|++.|++|+|||+|++++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 472
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=87.05 E-value=0.34 Score=46.06 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.6
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e 382 (811)
..|+|.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999873
No 473
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.00 E-value=0.52 Score=50.39 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc
Q 047690 362 ALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~ 383 (811)
++|+|+.|+|||||++.+++..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 6899999999999999999764
No 474
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=86.83 E-value=2.7 Score=47.10 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=23.6
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc----CCCeEEeec
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES----GVPFLSISG 392 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~----gvpfi~vs~ 392 (811)
+.+||+||+|+|||..+-.++... +.+++.+..
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P 165 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVP 165 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEES
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 357999999999999987666542 225555544
No 475
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.79 E-value=0.32 Score=46.48 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
-+.|.|+||+|||+|.+++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999975
No 476
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.78 E-value=0.37 Score=44.73 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=19.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
.|++.|++|+|||+|+.++.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999764
No 477
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=86.76 E-value=0.35 Score=45.35 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
.|+|.|++|+|||+|+.++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 478
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.75 E-value=0.31 Score=55.22 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-+.|.||+|+|||||+|.|++..
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 48899999999999999999864
No 479
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=86.62 E-value=0.37 Score=45.18 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.0
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
..|++.|++|+|||+|+.++.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998743
No 480
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=86.57 E-value=0.37 Score=46.01 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e 382 (811)
--|+|.|++|+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999875
No 481
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=86.49 E-value=0.43 Score=44.93 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.9
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e 382 (811)
+..|+|.|++|+|||+|+.++.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999999863
No 482
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.45 E-value=0.62 Score=50.98 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHh
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e 382 (811)
..++++.||+|+|||++++.++..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999998764
No 483
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=86.41 E-value=0.39 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e 382 (811)
..|++.|++|+|||+|+.++.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999763
No 484
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=86.39 E-value=0.38 Score=45.25 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
.|+|.|++|+|||+|+.++.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 485
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=86.37 E-value=1.2 Score=50.79 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCCHHHHHHHHH
Q 047690 360 KGALLVGPPGTGKTLLAKATA 380 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA 380 (811)
+.+|+..|+|+|||+.+..-+
T Consensus 41 ~d~lv~apTGsGKTl~~~lp~ 61 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIPA 61 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 468999999999998554333
No 486
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.35 E-value=0.4 Score=49.42 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=23.3
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc---CCC
Q 047690 359 PKGALLVGPPGTGKTLLAKATAGES---GVP 386 (811)
Q Consensus 359 pkGvLL~GPPGTGKT~LAkAlA~e~---gvp 386 (811)
++-|.|.|++|+||||+++.++..+ +.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3457899999999999999998865 555
No 487
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=86.31 E-value=0.39 Score=45.36 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
.|+|.|++|+|||+|+.++.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999874
No 488
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=86.31 E-value=0.39 Score=45.58 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.|+|.|++|+|||+|+.++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 489
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.23 E-value=0.4 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
.|++.|++|+|||+|+.++++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 490
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=86.20 E-value=3.4 Score=49.58 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=24.0
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc--------CCCeEEeec
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES--------GVPFLSISG 392 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~--------gvpfi~vs~ 392 (811)
+.+++.+|+|+|||..+-..+-.. +.+++.+..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 568999999999998766655433 556666544
No 491
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=86.19 E-value=0.41 Score=45.19 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
.|+|.|++|+|||+|+.++.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 492
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.14 E-value=0.39 Score=45.99 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.6
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e 382 (811)
..|++.|++|+|||+|++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 493
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=86.14 E-value=0.39 Score=47.45 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.5
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Q 047690 360 KGALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
..++|.|++|+|||+|+..++..+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999875
No 494
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.08 E-value=0.38 Score=48.62 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=21.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCeE
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVPFL 388 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvpfi 388 (811)
+.|.||.|+||||+++.|++. +..++
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred EEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 678999999999999999987 43333
No 495
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=86.05 E-value=0.16 Score=49.62 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=19.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Q 047690 361 GALLVGPPGTGKTLLAKATAGES 383 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e~ 383 (811)
-+.|.|++|+|||+|.+++++..
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999997643
No 496
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=86.03 E-value=0.4 Score=45.55 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Q 047690 360 KGALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 360 kGvLL~GPPGTGKT~LAkAlA~e 382 (811)
..|+|.|++|+|||+|++++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 497
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=86.02 E-value=0.41 Score=46.05 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
.|+|.|++|+|||+|+.++.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 498
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=85.94 E-value=0.34 Score=48.37 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCC
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGV 385 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gv 385 (811)
.+|+||.|+|||++..||.--++.
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 589999999999999999765543
No 499
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=85.90 E-value=0.56 Score=51.08 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=22.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCC
Q 047690 362 ALLVGPPGTGKTLLAKATAGESGVP 386 (811)
Q Consensus 362 vLL~GPPGTGKT~LAkAlA~e~gvp 386 (811)
+.|.||+|+|||+|++.|++.....
T Consensus 74 ~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 74 IGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Confidence 7899999999999999999987543
No 500
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=85.78 E-value=0.36 Score=45.93 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHh
Q 047690 361 GALLVGPPGTGKTLLAKATAGE 382 (811)
Q Consensus 361 GvLL~GPPGTGKT~LAkAlA~e 382 (811)
.|++.|++|+|||+|+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3799999999999999999874
Done!