BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047693
         (141 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IM8|A Chain A, Crystal Structure Of Mcat From Streptococcus Pneumoniae
          Length = 307

 Score = 28.5 bits (62), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 16/139 (11%)

Query: 9   AVILVAAMGALMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQC 68
           AV LVA  GA M +A     G ++ +++    +      K  +LG  TP   N   ++  
Sbjct: 108 AVALVAKRGAYMEEAAPADSGKMVAVLNTPVEVIEEACQKASELGVVTPANYNTPAQIVI 167

Query: 69  GGNV----NSTAVTSESGSFSIVLDPVQI---VVSSLLNDCCLVLKTPLATCNSNLPSAG 121
            G V     +  +  E+G+  ++  P+++     +SLL      L   LA       S  
Sbjct: 168 AGEVVAVDRAVELLQEAGAKRLI--PLKVSGPFHTSLLEPASQKLAETLAQV-----SFS 220

Query: 122 DLFSPLTIVGNTLLGILLK 140
           D   PL  VGNT   ++ K
Sbjct: 221 DFTCPL--VGNTEAAVMQK 237


>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
           Complex With Datp And Mg.
 pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
           Complex With Datp And Mg
          Length = 676

 Score = 27.3 bits (59), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 18  ALMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAV 77
           AL++ + GG IG  +  I   G+     NG    L     V+ N    +  GGN      
Sbjct: 166 ALISKSAGG-IGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGN------ 218

Query: 78  TSESGSFSIVLDPVQIVVSSLLN 100
               G+F+I L+P  + +   L+
Sbjct: 219 -KRPGAFAIYLEPWHLDIFEFLD 240


>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp
 pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp
 pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp And Substrate Gdp
 pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp And Substrate Gdp
 pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Atp
 pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Atp
 pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Datp
 pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Datp
          Length = 792

 Score = 27.3 bits (59), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 18  ALMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAV 77
           AL++ + GG IG  +  I   G+     NG    L     V+ N    +  GGN      
Sbjct: 239 ALISKSAGG-IGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGN------ 291

Query: 78  TSESGSFSIVLDPVQIVVSSLLN 100
               G+F+I L+P  + +   L+
Sbjct: 292 -KRPGAFAIYLEPWHLDIFEFLD 313


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.138    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,887,814
Number of Sequences: 62578
Number of extensions: 148541
Number of successful extensions: 334
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 4
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)