BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047693
         (141 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q56S59|PHYLL_TOBAC Phylloplanin OS=Nicotiana tabacum PE=1 SV=1
          Length = 150

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 80/130 (61%), Gaps = 10/130 (7%)

Query: 7   VYAVILVAAMGALMADAQGGVIGTLLGLIHIEGTLYYTVNGKIGDLGQATP-VFPNAKVE 65
           ++ + L+AA+ A  A A   ++ TL+   HI G ++ +VNG +  +   +P VFPNA V+
Sbjct: 6   IFLIFLLAALIATPA-AFAILVPTLVS-THISGLVFCSVNGNLDVINGLSPQVFPNASVQ 63

Query: 66  LQCGG-NVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLPSAGDLF 124
           L+CG  NV S+ +T+ SG+FS+ ++   ++      +C LV+ TPL+TCN+ L S G L 
Sbjct: 64  LRCGATNVISSTITNGSGAFSLAVNTFPLL------NCNLVVATPLSTCNATLQSVGRLA 117

Query: 125 SPLTIVGNTL 134
           S L +V  TL
Sbjct: 118 SSLRLVNITL 127


>sp|Q6P1G2|KDM2B_MOUSE Lysine-specific demethylase 2B OS=Mus musculus GN=Kdm2b PE=1 SV=1
          Length = 1309

 Score = 32.7 bits (73), Expect = 0.64,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 57  PVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSN 116
           PV P+  V L CG       V  E G F+++L    I  + +++  CL +K      N  
Sbjct: 627 PVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSI-CNEIIHPGCLKIKESEGVVNDE 685

Query: 117 LPS 119
           LP+
Sbjct: 686 LPN 688


>sp|Q8NHM5|KDM2B_HUMAN Lysine-specific demethylase 2B OS=Homo sapiens GN=KDM2B PE=1 SV=1
          Length = 1336

 Score = 32.7 bits (73), Expect = 0.64,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 57  PVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSN 116
           PV P+  V L CG       V  E G F+++L    I  + +++  CL +K      N  
Sbjct: 654 PVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSI-CNEIIHPGCLKIKESEGVVNDE 712

Query: 117 LPS 119
           LP+
Sbjct: 713 LPN 715


>sp|Q04177|UTP5_YEAST U3 small nucleolar RNA-associated protein 5 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=UTP5 PE=1
           SV=1
          Length = 643

 Score = 30.4 bits (67), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 65  ELQCGGNVNSTAVTSESGSFSIVLDPV 91
           EL   G  +S AVT+E GS  I +DP+
Sbjct: 234 ELSHSGQADSIAVTTEDGSLEIFVDPL 260


>sp|B0K0J1|AROA_THEPX 3-phosphoshikimate 1-carboxyvinyltransferase OS=Thermoanaerobacter
           sp. (strain X514) GN=aroA PE=3 SV=1
          Length = 423

 Score = 29.3 bits (64), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 108 TPLATCNSNLPSAGDLFSPLTIVGNTLLGILLK 140
           TPL+   + + +    F+PLT+ GN L GI  K
Sbjct: 127 TPLSMMGAKIEAREGNFAPLTVFGNKLKGIYYK 159


>sp|B0K928|AROA_THEP3 3-phosphoshikimate 1-carboxyvinyltransferase OS=Thermoanaerobacter
           pseudethanolicus (strain ATCC 33223 / 39E) GN=aroA PE=3
           SV=1
          Length = 423

 Score = 29.3 bits (64), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 108 TPLATCNSNLPSAGDLFSPLTIVGNTLLGILLK 140
           TPL+   + + +    F+PLT+ GN L GI  K
Sbjct: 127 TPLSMMGAKIEAREGNFAPLTVFGNKLKGIYYK 159


>sp|B0W377|MOCS3_CULQU Adenylyltransferase and sulfurtransferase MOCS3 OS=Culex
           quinquefasciatus GN=CPIJ001621 PE=3 SV=1
          Length = 438

 Score = 28.9 bits (63), Expect = 9.0,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 14/85 (16%)

Query: 34  LIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESG-----SFSIVL 88
           L+H E T+  T      D  Q      N+++E+    + + T +TS++       + IV+
Sbjct: 114 LLHTESTVGLTKVDSARDYLQEL----NSQIEV----STHHTQLTSDNALTILEQYDIVV 165

Query: 89  DPVQIVVSS-LLNDCCLVLKTPLAT 112
           D    V +  LLND C++LK PL +
Sbjct: 166 DATDNVATRYLLNDACVLLKKPLVS 190


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.138    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,015,357
Number of Sequences: 539616
Number of extensions: 1920651
Number of successful extensions: 4694
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4682
Number of HSP's gapped (non-prelim): 22
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)