Query 047693
Match_columns 141
No_of_seqs 62 out of 64
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 13:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047693.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047693hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01190 Pollen_Ole_e_I: Polle 99.8 8.2E-21 1.8E-25 134.8 9.2 85 37-123 1-92 (97)
2 PF13620 CarboxypepD_reg: Carb 96.2 0.0097 2.1E-07 39.4 4.3 45 37-91 2-48 (82)
3 PF11974 MG1: Alpha-2-macroglo 95.6 0.02 4.4E-07 41.2 4.3 37 53-89 22-60 (97)
4 PF13715 DUF4480: Domain of un 94.0 0.23 5E-06 33.5 5.9 31 57-90 13-43 (88)
5 PRK15036 hydroxyisourate hydro 91.8 1.2 2.7E-05 34.2 7.8 35 53-87 36-74 (137)
6 PF01060 DUF290: Transthyretin 91.6 0.49 1.1E-05 32.6 4.8 35 57-91 9-48 (80)
7 PF08400 phage_tail_N: Prophag 90.6 1.1 2.5E-05 34.8 6.5 53 34-96 2-61 (134)
8 PF07210 DUF1416: Protein of u 90.2 1.4 3E-05 32.2 6.3 48 34-92 7-55 (85)
9 PF05738 Cna_B: Cna protein B- 89.0 0.9 1.9E-05 29.4 4.2 30 59-88 1-33 (70)
10 PF10670 DUF4198: Domain of un 85.2 1.4 3E-05 33.7 4.0 34 57-90 162-201 (215)
11 cd03866 M14_CPM Peptidase M14 85.1 2.5 5.4E-05 37.1 6.0 45 37-92 297-341 (376)
12 PF00775 Dioxygenase_C: Dioxyg 84.0 3.8 8.3E-05 32.8 6.1 46 32-87 27-89 (183)
13 PF07172 GRP: Glycine rich pro 83.8 1 2.2E-05 32.8 2.6 12 1-12 1-12 (95)
14 PF10262 Rdx: Rdx family; Int 79.4 0.61 1.3E-05 31.8 0.0 42 40-91 5-52 (76)
15 cd00421 intradiol_dioxygenase 77.6 11 0.00024 28.6 6.5 46 33-88 10-72 (146)
16 cd03858 M14_CP_N-E_like Carbox 77.4 5.5 0.00012 34.4 5.3 42 36-90 299-340 (374)
17 TIGR02174 CXXU_selWTH selT/sel 76.5 2.9 6.4E-05 28.4 2.8 43 40-90 3-49 (72)
18 cd03863 M14_CPD_II The second 71.4 7.6 0.00016 34.3 4.8 44 37-92 299-342 (375)
19 TIGR02438 catachol_actin catec 69.9 16 0.00034 31.6 6.2 46 33-88 131-191 (281)
20 TIGR02465 chlorocat_1_2 chloro 69.0 16 0.00035 30.8 6.0 46 33-88 97-157 (246)
21 TIGR02423 protocat_alph protoc 67.7 24 0.00053 28.6 6.6 46 33-88 38-103 (193)
22 cd06245 M14_CPD_III The third 67.6 13 0.00029 32.5 5.5 41 37-91 289-329 (363)
23 TIGR02439 catechol_proteo cate 67.2 18 0.00039 31.2 6.1 46 32-87 126-186 (285)
24 cd03865 M14_CPE_H Peptidase M1 65.3 11 0.00024 33.9 4.5 42 37-91 328-369 (402)
25 cd03460 1,2-CTD Catechol 1,2 d 64.4 20 0.00043 31.0 5.8 46 32-87 122-182 (282)
26 cd03462 1,2-CCD chlorocatechol 64.2 22 0.00049 30.1 6.0 46 33-88 98-158 (247)
27 cd03464 3,4-PCD_beta Protocate 64.0 33 0.00071 28.5 6.8 46 33-88 64-129 (220)
28 PF10731 Anophelin: Thrombin i 63.6 6.6 0.00014 27.3 2.2 25 1-25 1-25 (65)
29 cd03458 Catechol_intradiol_dio 62.0 26 0.00057 29.8 6.0 46 32-87 102-162 (256)
30 cd03461 1,2-HQD Hydroxyquinol 61.2 26 0.00056 30.1 5.9 46 32-87 118-178 (277)
31 cd03463 3,4-PCD_alpha Protocat 61.1 35 0.00077 27.5 6.4 46 33-88 35-99 (185)
32 PF02369 Big_1: Bacterial Ig-l 61.1 17 0.00037 25.8 4.1 34 58-91 38-77 (100)
33 PF12477 TraW_N: Sex factor F 60.0 7.2 0.00016 23.4 1.7 24 8-31 3-27 (31)
34 cd03459 3,4-PCD Protocatechuat 57.0 49 0.0011 25.9 6.4 46 33-88 14-79 (158)
35 TIGR02422 protocat_beta protoc 55.6 50 0.0011 27.4 6.5 46 33-88 59-124 (220)
36 COG3485 PcaH Protocatechuate 3 52.9 59 0.0013 27.2 6.6 46 33-88 71-135 (226)
37 TIGR02513 type_III_yscB type I 52.9 13 0.00028 29.4 2.5 34 77-112 17-50 (139)
38 PF14054 DUF4249: Domain of un 52.5 63 0.0014 26.0 6.6 38 33-71 26-72 (298)
39 TIGR02962 hdxy_isourate hydrox 52.2 18 0.0004 26.9 3.2 30 57-86 14-47 (112)
40 cd03868 M14_CPD_I The first ca 50.0 38 0.00082 29.4 5.2 42 37-91 298-339 (372)
41 PF03785 Peptidase_C25_C: Pept 47.5 47 0.001 24.0 4.5 33 59-92 25-58 (81)
42 KOG1948 Metalloproteinase-rela 46.7 31 0.00067 34.9 4.5 43 33-88 314-356 (1165)
43 cd03867 M14_CPZ Peptidase M14- 46.3 24 0.00052 31.2 3.5 41 37-90 320-360 (395)
44 COG5455 Predicted integral mem 44.4 17 0.00037 28.4 2.0 22 3-24 2-23 (129)
45 cd03864 M14_CPN Peptidase M14 42.5 36 0.00079 30.3 4.0 39 37-88 318-356 (392)
46 KOG1948 Metalloproteinase-rela 42.2 35 0.00075 34.6 4.1 36 52-87 749-786 (1165)
47 COG5266 CbiK ABC-type Co2+ tra 41.0 41 0.0009 29.1 4.0 33 57-89 183-229 (264)
48 PF14731 Staphopain_pro: Staph 35.5 33 0.00071 27.9 2.4 27 76-112 116-142 (169)
49 PF03983 SHD1: SLA1 homology d 33.9 30 0.00066 24.2 1.7 18 72-89 10-27 (70)
50 PF14686 fn3_3: Polysaccharide 28.4 34 0.00074 24.6 1.3 27 60-88 22-56 (95)
51 PF03117 Herpes_UL49_1: UL49 f 27.8 85 0.0018 26.9 3.8 65 38-115 150-216 (245)
52 PRK15241 putative fimbrial pro 26.6 1.3E+02 0.0028 24.2 4.4 42 1-49 1-42 (188)
53 PRK15209 long polar fimbrial p 26.3 1.3E+02 0.0028 22.9 4.3 16 33-48 26-41 (174)
54 smart00634 BID_1 Bacterial Ig- 26.2 1.3E+02 0.0028 20.6 3.9 34 58-91 33-71 (92)
55 PF13717 zinc_ribbon_4: zinc-r 26.2 50 0.0011 19.8 1.5 28 41-70 3-30 (36)
56 PF13115 YtkA: YtkA-like 24.9 1.6E+02 0.0035 19.5 4.1 33 57-89 33-74 (86)
57 PRK15205 long polar fimbrial p 23.8 1.3E+02 0.0029 23.1 3.9 44 1-48 1-45 (176)
58 PRK11067 outer membrane protei 23.7 94 0.002 29.1 3.6 40 1-46 1-40 (803)
59 cd04493 BRCA2DBD_OB1 BRCA2DBD_ 23.2 41 0.00089 25.0 0.9 47 80-127 28-74 (100)
60 PRK09733 putative fimbrial pro 22.6 1.8E+02 0.0039 22.4 4.5 16 33-48 26-41 (181)
61 PRK15307 major fimbrial protei 22.1 1.7E+02 0.0036 23.2 4.3 43 1-48 1-44 (201)
62 PRK15214 fimbrial protein PefA 20.4 1.9E+02 0.004 23.0 4.2 16 33-48 23-38 (172)
63 KOG2397 Protein kinase C subst 20.3 1.1E+02 0.0025 28.5 3.3 36 62-117 435-472 (480)
64 PRK15289 lpfA fimbrial protein 20.0 2.1E+02 0.0046 22.1 4.4 16 33-48 26-41 (190)
No 1
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=99.84 E-value=8.2e-21 Score=134.79 Aligned_cols=85 Identities=29% Similarity=0.447 Sum_probs=73.6
Q ss_pred EEEEEEccCCCccccccccCCCcCCCeEEEEeCC-----eeeeeEEeCCceeEEEEeCcch-hhhhccCCCcEEE-eccC
Q 047693 37 IEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGG-----NVNSTAVTSESGSFSIVLDPVQ-IVVSSLLNDCCLV-LKTP 109 (141)
Q Consensus 37 V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g-----~~~~eAtTd~~G~F~i~v~~~~-~~l~~l~~~C~vV-V~SP 109 (141)
|+|+|||+.|+. +|+ ..+++||||+|+|+|++ .+..+++||++|+|+|.++.+. .+.....+.|+++ +.+|
T Consensus 1 V~G~V~C~~C~~-~~~-~~~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~l~~~~~~~~~~~~~~C~v~l~~sp 78 (97)
T PF01190_consen 1 VEGVVYCDDCSS-GFS-RAAKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIELPSDPGSSSPHLSSSCRVKLVSSP 78 (97)
T ss_pred CEEEEEeCCCCC-Ccc-ccCccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEEecCccccccCCCCCCcEEEEeCCC
Confidence 799999999999 788 88999999999999998 4899999999999999998651 1113457999998 7999
Q ss_pred ccccCcCCCCCCce
Q 047693 110 LATCNSNLPSAGDL 123 (141)
Q Consensus 110 l~~Cn~~Lp~~g~L 123 (141)
+..|+.+.+.++++
T Consensus 79 ~~~C~~~~~~~~G~ 92 (97)
T PF01190_consen 79 DPSCNVPTNSNGGR 92 (97)
T ss_pred cCcCCCCcCCCCCc
Confidence 99999999888654
No 2
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=96.20 E-value=0.0097 Score=39.45 Aligned_cols=45 Identities=33% Similarity=0.411 Sum_probs=30.4
Q ss_pred EEEEEEccCCCccccccccCCCcCCCeEEEEeCC-eeeeeEEeCCceeEEEE-eCcc
Q 047693 37 IEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGG-NVNSTAVTSESGSFSIV-LDPV 91 (141)
Q Consensus 37 V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g-~~~~eAtTd~~G~F~i~-v~~~ 91 (141)
|+|+|.=. .+ .+++||.|.|.-.+ ....+++||.+|.|++. +.+.
T Consensus 2 I~G~V~d~-~g---------~pv~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g 48 (82)
T PF13620_consen 2 ISGTVTDA-TG---------QPVPGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPG 48 (82)
T ss_dssp EEEEEEET-TS---------CBHTT-EEEET--TTTECCEEE--TTSEEEEEEE-SE
T ss_pred EEEEEEcC-CC---------CCcCCEEEEEEEeeCCCEEEEEECCCceEEEEccCCE
Confidence 78888743 11 47899999999653 57888999999999998 6643
No 3
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=95.62 E-value=0.02 Score=41.17 Aligned_cols=37 Identities=24% Similarity=0.156 Sum_probs=33.2
Q ss_pred cccCCCcCCCeEEEE--eCCeeeeeEEeCCceeEEEEeC
Q 047693 53 GQATPVFPNAKVELQ--CGGNVNSTAVTSESGSFSIVLD 89 (141)
Q Consensus 53 t~ssp~fpnA~V~L~--C~g~~~~eAtTd~~G~F~i~v~ 89 (141)
.....+++||+|+|- +.++..++++||++|.+++...
T Consensus 22 L~tg~Pv~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~ 60 (97)
T PF11974_consen 22 LSTGKPVAGAEVELYDSRNGQVLASGKTDADGFASFDST 60 (97)
T ss_pred CCCCCccCCCEEEEEECCCCcEeeeeeeCCCceEEecCC
Confidence 456789999999998 7789999999999999999886
No 4
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=94.01 E-value=0.23 Score=33.46 Aligned_cols=31 Identities=39% Similarity=0.470 Sum_probs=26.1
Q ss_pred CCcCCCeEEEEeCCeeeeeEEeCCceeEEEEeCc
Q 047693 57 PVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDP 90 (141)
Q Consensus 57 p~fpnA~V~L~C~g~~~~eAtTd~~G~F~i~v~~ 90 (141)
.+++||.|++.=.+ ..+.||.+|.|+|.+..
T Consensus 13 ~pl~~a~V~~~~~~---~~~~Td~~G~F~i~~~~ 43 (88)
T PF13715_consen 13 EPLPGATVYLKNTK---KGTVTDENGRFSIKLPE 43 (88)
T ss_pred CCccCeEEEEeCCc---ceEEECCCeEEEEEEcC
Confidence 68999999998443 56899999999999763
No 5
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=91.79 E-value=1.2 Score=34.24 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=27.7
Q ss_pred cccCCCcCCCeEEEEeCC----eeeeeEEeCCceeEEEE
Q 047693 53 GQATPVFPNAKVELQCGG----NVNSTAVTSESGSFSIV 87 (141)
Q Consensus 53 t~ssp~fpnA~V~L~C~g----~~~~eAtTd~~G~F~i~ 87 (141)
+..-.+.+|.+|+|+=.+ ....+++||.+|.|+..
T Consensus 36 t~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l 74 (137)
T PRK15036 36 QQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKAL 74 (137)
T ss_pred CCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccc
Confidence 344468899999998654 46789999999999863
No 6
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=91.57 E-value=0.49 Score=32.62 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=29.8
Q ss_pred CCcCCCeEEEEeCC-----eeeeeEEeCCceeEEEEeCcc
Q 047693 57 PVFPNAKVELQCGG-----NVNSTAVTSESGSFSIVLDPV 91 (141)
Q Consensus 57 p~fpnA~V~L~C~g-----~~~~eAtTd~~G~F~i~v~~~ 91 (141)
.+++|++|+|-=.+ .+.++++||.+|.|.|.-...
T Consensus 9 ~P~~~~~V~L~e~d~~~~Ddll~~~~Td~~G~F~l~G~~~ 48 (80)
T PF01060_consen 9 KPAKNVKVKLWEDDYFDPDDLLDETKTDSDGNFELSGSTN 48 (80)
T ss_pred ccCCCCEEEEEECCCCCCCceeEEEEECCCceEEEEEEcc
Confidence 46899999998885 488999999999999987643
No 7
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=90.62 E-value=1.1 Score=34.78 Aligned_cols=53 Identities=25% Similarity=0.402 Sum_probs=41.3
Q ss_pred EEEEEEEEEccCCCccccccccCCCcCCCeEEEEeCC-------eeeeeEEeCCceeEEEEeCcchhhhh
Q 047693 34 LIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGG-------NVNSTAVTSESGSFSIVLDPVQIVVS 96 (141)
Q Consensus 34 ~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g-------~~~~eAtTd~~G~F~i~v~~~~~~l~ 96 (141)
++.|+|+.- . ..=.+++|+..+|.=+. ++++...||..|.|+|++.+-.....
T Consensus 2 sV~ISGvL~---d-------g~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~epG~Y~V~ 61 (134)
T PF08400_consen 2 SVKISGVLK---D-------GAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFDVEPGVYRVT 61 (134)
T ss_pred eEEEEEEEe---C-------CCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEEecCCeEEEE
Confidence 467888753 2 23378999999999885 37888999999999999998776443
No 8
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=90.25 E-value=1.4 Score=32.18 Aligned_cols=48 Identities=27% Similarity=0.335 Sum_probs=40.6
Q ss_pred EEEEEEEEEccCCCccccccccCCCcCCCeEEEEeC-CeeeeeEEeCCceeEEEEeCcch
Q 047693 34 LIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCG-GNVNSTAVTSESGSFSIVLDPVQ 92 (141)
Q Consensus 34 ~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~-g~~~~eAtTd~~G~F~i~v~~~~ 92 (141)
..+|+|+|- +. | .+.++|.|+|-=. +.+.+|-.|+.+|.|+....+-+
T Consensus 7 e~VItG~V~----~~-G------~Pv~gAyVRLLD~sgEFtaEvvts~~G~FRFfaapG~ 55 (85)
T PF07210_consen 7 ETVITGRVT----RD-G------EPVGGAYVRLLDSSGEFTAEVVTSATGDFRFFAAPGS 55 (85)
T ss_pred eEEEEEEEe----cC-C------cCCCCeEEEEEcCCCCeEEEEEecCCccEEEEeCCCc
Confidence 468999997 33 2 5889999999887 57999999999999999998665
No 9
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=88.98 E-value=0.9 Score=29.40 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=23.9
Q ss_pred cCCCeEEEEeCC-eeee--eEEeCCceeEEEEe
Q 047693 59 FPNAKVELQCGG-NVNS--TAVTSESGSFSIVL 88 (141)
Q Consensus 59 fpnA~V~L~C~g-~~~~--eAtTd~~G~F~i~v 88 (141)
++||+++|...+ .... +.+||++|.|.+.-
T Consensus 1 L~Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~ 33 (70)
T PF05738_consen 1 LAGATFELYDEDGNEVIEVTVTTDENGKYTFKN 33 (70)
T ss_dssp -STEEEEEEETTSEEEEEEEEEGGTTSEEEEEE
T ss_pred CCCeEEEEEECCCCEEEEEEEEECCCCEEEEee
Confidence 479999999996 3444 48999999998873
No 10
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=85.23 E-value=1.4 Score=33.73 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=29.3
Q ss_pred CCcCCCeEEEEeCCee------eeeEEeCCceeEEEEeCc
Q 047693 57 PVFPNAKVELQCGGNV------NSTAVTSESGSFSIVLDP 90 (141)
Q Consensus 57 p~fpnA~V~L~C~g~~------~~eAtTd~~G~F~i~v~~ 90 (141)
++++||.|++.-.+.- ..+.+||.+|.+++.++.
T Consensus 162 kPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~ 201 (215)
T PF10670_consen 162 KPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPR 201 (215)
T ss_pred eEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCC
Confidence 6789999999999743 677999999999999863
No 11
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=85.06 E-value=2.5 Score=37.12 Aligned_cols=45 Identities=27% Similarity=0.475 Sum_probs=32.4
Q ss_pred EEEEEEccCCCccccccccCCCcCCCeEEEEeCCeeeeeEEeCCceeEEEEeCcch
Q 047693 37 IEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQ 92 (141)
Q Consensus 37 V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g~~~~eAtTd~~G~F~i~v~~~~ 92 (141)
|+|.|. |. . | .++|||+|++. +.......+||.+|.|.+.+.+.+
T Consensus 297 I~G~V~-D~--~-g------~pi~~A~V~v~-g~~~~~~~~T~~~G~y~~~l~pG~ 341 (376)
T cd03866 297 VKGQVF-DS--N-G------NPIPNAIVEVK-GRKHICPYRTNVNGEYFLLLLPGK 341 (376)
T ss_pred eEEEEE-CC--C-C------CccCCeEEEEE-cCCceeEEEECCCceEEEecCCee
Confidence 799997 43 2 2 48999999998 322234568999999987765443
No 12
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=83.95 E-value=3.8 Score=32.76 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=31.9
Q ss_pred ceEEEEEEEEEccCCCccccccccCCCcCCCeEEE-EeCC----------------eeeeeEEeCCceeEEEE
Q 047693 32 LGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVEL-QCGG----------------NVNSTAVTSESGSFSIV 87 (141)
Q Consensus 32 ~~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L-~C~g----------------~~~~eAtTd~~G~F~i~ 87 (141)
...+.|+|+|.=..| .+++||.|++ +|.. ++-+...||.+|.|++.
T Consensus 27 G~~l~l~G~V~D~~g----------~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~ 89 (183)
T PF00775_consen 27 GEPLVLHGRVIDTDG----------KPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFR 89 (183)
T ss_dssp S-EEEEEEEEEETTS----------SB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEE
T ss_pred CCEEEEEEEEECCCC----------CCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEE
Confidence 346899999993222 3689999999 8873 25567889999999764
No 13
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=83.82 E-value=1 Score=32.85 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=9.8
Q ss_pred CchHHHHHHHHH
Q 047693 1 MGLKSLVYAVIL 12 (141)
Q Consensus 1 m~~~~~~~~~ll 12 (141)
||.|+|+++.|+
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 999998777666
No 14
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=79.42 E-value=0.61 Score=31.77 Aligned_cols=42 Identities=26% Similarity=0.382 Sum_probs=29.2
Q ss_pred EEEccCCCccc----cccccCCCcCC--CeEEEEeCCeeeeeEEeCCceeEEEEeCcc
Q 047693 40 TLYYTVNGKIG----DLGQATPVFPN--AKVELQCGGNVNSTAVTSESGSFSIVLDPV 91 (141)
Q Consensus 40 ~VyCdtc~~~g----f~t~ssp~fpn--A~V~L~C~g~~~~eAtTd~~G~F~i~v~~~ 91 (141)
..||+.|+... +....-..||+ +.|.+ ...+.|.|.+.+|+.
T Consensus 5 IeYC~~C~~~~~a~~l~~~l~~~fp~~~~~v~~----------~~~~~G~FEV~v~g~ 52 (76)
T PF10262_consen 5 IEYCTSCGYRPRALELAQELLQTFPDRIAEVEL----------SPGSTGAFEVTVNGE 52 (76)
T ss_dssp EEEETTTTCHHHHHHHHHHHHHHSTTTCSEEEE----------EEESTT-EEEEETTE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcceEEEE----------EeccCCEEEEEEccE
Confidence 47999997532 23444557888 77776 447799999999954
No 15
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=77.57 E-value=11 Score=28.64 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=33.0
Q ss_pred eEEEEEEEEEccCCCccccccccCCCcCCCeEEEEeCCe-----------------eeeeEEeCCceeEEEEe
Q 047693 33 GLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGN-----------------VNSTAVTSESGSFSIVL 88 (141)
Q Consensus 33 ~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g~-----------------~~~eAtTd~~G~F~i~v 88 (141)
..+.|+|+|. |..+ .++++|.|++--.+. +-+...||.+|.|++..
T Consensus 10 ~~l~l~G~V~-D~~g---------~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~t 72 (146)
T cd00421 10 EPLTLTGTVL-DGDG---------CPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRT 72 (146)
T ss_pred CEEEEEEEEE-CCCC---------CCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEE
Confidence 3578999998 3322 257889999976642 34467899999998864
No 16
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=77.42 E-value=5.5 Score=34.36 Aligned_cols=42 Identities=26% Similarity=0.421 Sum_probs=31.6
Q ss_pred EEEEEEEccCCCccccccccCCCcCCCeEEEEeCCeeeeeEEeCCceeEEEEeCc
Q 047693 36 HIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDP 90 (141)
Q Consensus 36 ~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g~~~~eAtTd~~G~F~i~v~~ 90 (141)
.|+|+|.-.. | .++++|+|.+. .....++||.+|.|++.+.+
T Consensus 299 ~i~G~V~d~~----g------~pl~~A~V~i~---~~~~~~~Td~~G~f~~~l~~ 340 (374)
T cd03858 299 GIKGFVRDAN----G------NPIANATISVE---GINHDVTTAEDGDYWRLLLP 340 (374)
T ss_pred ceEEEEECCC----C------CccCCeEEEEe---cceeeeEECCCceEEEecCC
Confidence 3799987652 1 47899999993 34456899999999987653
No 17
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=76.51 E-value=2.9 Score=28.38 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=29.7
Q ss_pred EEEccCCCccc----cccccCCCcCCCeEEEEeCCeeeeeEEeCCceeEEEEeCc
Q 047693 40 TLYYTVNGKIG----DLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDP 90 (141)
Q Consensus 40 ~VyCdtc~~~g----f~t~ssp~fpnA~V~L~C~g~~~~eAtTd~~G~F~i~v~~ 90 (141)
..||..|+.+. +....-..||+..|.+ +....+.|.|.+.+|+
T Consensus 3 IeyC~~C~y~~Ra~~l~q~L~~~Fp~~~v~~--------~~~~~~~G~Fev~~~g 49 (72)
T TIGR02174 3 IEYCGSCGYKPRAAWLKQELLEEFPDLEIEG--------ENTPPTTGAFEVTVNG 49 (72)
T ss_pred EEECCCCCChHHHHHHHHHHHHHCCCCeeEE--------eeecCCCcEEEEEECC
Confidence 47999999854 1233345678875543 3456789999999985
No 18
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=71.41 E-value=7.6 Score=34.28 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=31.5
Q ss_pred EEEEEEccCCCccccccccCCCcCCCeEEEEeCCeeeeeEEeCCceeEEEEeCcch
Q 047693 37 IEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQ 92 (141)
Q Consensus 37 V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g~~~~eAtTd~~G~F~i~v~~~~ 92 (141)
|+|+|.=.. +=.++++|+|+++ | ....++||.+|.|.+.+.+-.
T Consensus 299 I~G~V~D~~---------~g~pl~~AtV~V~--g-~~~~~~Td~~G~f~~~l~pG~ 342 (375)
T cd03863 299 VRGFVLDAT---------DGRGILNATISVA--D-INHPVTTYKDGDYWRLLVPGT 342 (375)
T ss_pred EEEEEEeCC---------CCCCCCCeEEEEe--c-CcCceEECCCccEEEccCCee
Confidence 789886322 1147999999997 2 234588999999999766443
No 19
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=69.92 E-value=16 Score=31.57 Aligned_cols=46 Identities=24% Similarity=0.416 Sum_probs=32.5
Q ss_pred eEEEEEEEEEccCCCccccccccCCCcCCCeEEE-EeCC--e------------eeeeEEeCCceeEEEEe
Q 047693 33 GLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVEL-QCGG--N------------VNSTAVTSESGSFSIVL 88 (141)
Q Consensus 33 ~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L-~C~g--~------------~~~eAtTd~~G~F~i~v 88 (141)
..+.|+|+|. |..+ .+++||.|.+ +|.. . +-+.-.||.+|.|++..
T Consensus 131 ~pl~v~G~V~-D~~G---------~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~T 191 (281)
T TIGR02438 131 TPLVFSGQVT-DLDG---------NGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITT 191 (281)
T ss_pred CEEEEEEEEE-cCCC---------CCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEE
Confidence 4588999998 4332 4899999999 4442 2 34467889999887653
No 20
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=68.96 E-value=16 Score=30.84 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=32.9
Q ss_pred eEEEEEEEEEccCCCccccccccCCCcCCCeEEEEeCC---------------eeeeeEEeCCceeEEEEe
Q 047693 33 GLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGG---------------NVNSTAVTSESGSFSIVL 88 (141)
Q Consensus 33 ~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g---------------~~~~eAtTd~~G~F~i~v 88 (141)
..+.|+|+|. |..+ .+++||.|++=-.+ ++-+.-.||.+|.|++..
T Consensus 97 ~~l~v~G~V~-D~~G---------~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~T 157 (246)
T TIGR02465 97 KPLLIRGTVR-DLSG---------TPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVRT 157 (246)
T ss_pred cEEEEEEEEE-cCCC---------CCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEEE
Confidence 4588999998 5332 48999999986543 134567888888888753
No 21
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=67.68 E-value=24 Score=28.58 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=32.7
Q ss_pred eEEEEEEEEEccCCCccccccccCCCcCCCeEEEEeCC---ee-----------------eeeEEeCCceeEEEEe
Q 047693 33 GLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGG---NV-----------------NSTAVTSESGSFSIVL 88 (141)
Q Consensus 33 ~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g---~~-----------------~~eAtTd~~G~F~i~v 88 (141)
..+.++|+|. |.. + .+++||.|++=..+ .+ .+...||++|.|++..
T Consensus 38 ~~l~l~G~V~-D~~---g------~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~T 103 (193)
T TIGR02423 38 ERIRLEGRVL-DGD---G------HPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFET 103 (193)
T ss_pred CEEEEEEEEE-CCC---C------CCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEE
Confidence 4589999998 432 2 58999999995542 11 2346789999998764
No 22
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=67.56 E-value=13 Score=32.51 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=30.7
Q ss_pred EEEEEEccCCCccccccccCCCcCCCeEEEEeCCeeeeeEEeCCceeEEEEeCcc
Q 047693 37 IEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPV 91 (141)
Q Consensus 37 V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g~~~~eAtTd~~G~F~i~v~~~ 91 (141)
|+|+|. |. . | .+++||+|.+.= . . ..+||.+|.|.+.+.+.
T Consensus 289 I~G~V~-d~--~-g------~pi~~A~V~v~g--~-~-~~~T~~~G~y~~~L~pG 329 (363)
T cd06245 289 VHGVVT-DK--A-G------KPISGATIVLNG--G-H-RVYTKEGGYFHVLLAPG 329 (363)
T ss_pred EEEEEE-cC--C-C------CCccceEEEEeC--C-C-ceEeCCCcEEEEecCCc
Confidence 799986 22 2 1 479999999983 2 2 68899999999987644
No 23
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=67.22 E-value=18 Score=31.24 Aligned_cols=46 Identities=24% Similarity=0.362 Sum_probs=32.8
Q ss_pred ceEEEEEEEEEccCCCccccccccCCCcCCCeEEEEeCC---e------------eeeeEEeCCceeEEEE
Q 047693 32 LGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGG---N------------VNSTAVTSESGSFSIV 87 (141)
Q Consensus 32 ~~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g---~------------~~~eAtTd~~G~F~i~ 87 (141)
...+.|+|+|. |..+ .+++||.|++=..+ . .-+.-+||.+|.|++.
T Consensus 126 G~pl~v~G~V~-D~~G---------~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~ 186 (285)
T TIGR02439 126 GETLFLHGQVT-DADG---------KPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRAR 186 (285)
T ss_pred CcEEEEEEEEE-CCCC---------CCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEE
Confidence 34588999998 5332 37999999996653 1 3456778888887764
No 24
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=65.32 E-value=11 Score=33.86 Aligned_cols=42 Identities=19% Similarity=0.419 Sum_probs=30.5
Q ss_pred EEEEEEccCCCccccccccCCCcCCCeEEEEeCCeeeeeEEeCCceeEEEEeCcc
Q 047693 37 IEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPV 91 (141)
Q Consensus 37 V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g~~~~eAtTd~~G~F~i~v~~~ 91 (141)
|+|+|.-.. | .+++||+|+++ + .....+||.+|.|.+.+.+-
T Consensus 328 I~G~V~D~~----g------~pI~~AtV~V~--g-~~~~~~T~~~G~Y~~~L~pG 369 (402)
T cd03865 328 VKGFVKDLQ----G------NPIANATISVE--G-IDHDITSAKDGDYWRLLAPG 369 (402)
T ss_pred eEEEEECCC----C------CcCCCeEEEEE--c-CccccEECCCeeEEECCCCE
Confidence 799996532 1 37999999998 2 22346899999999865543
No 25
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=64.40 E-value=20 Score=30.96 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=32.6
Q ss_pred ceEEEEEEEEEccCCCccccccccCCCcCCCeEEEEeCC---e------------eeeeEEeCCceeEEEE
Q 047693 32 LGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGG---N------------VNSTAVTSESGSFSIV 87 (141)
Q Consensus 32 ~~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g---~------------~~~eAtTd~~G~F~i~ 87 (141)
...+.++|+|. |..+ .+++||.|++=..+ . .-+.-+||.+|.|++.
T Consensus 122 Gepl~l~G~V~-D~~G---------~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~ 182 (282)
T cd03460 122 GETLVMHGTVT-DTDG---------KPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFR 182 (282)
T ss_pred CCEEEEEEEEE-CCCC---------CCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEE
Confidence 34588999998 4322 37999999996653 1 3445678888887764
No 26
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=64.16 E-value=22 Score=30.07 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=32.5
Q ss_pred eEEEEEEEEEccCCCccccccccCCCcCCCeEEEEeCC---e------------eeeeEEeCCceeEEEEe
Q 047693 33 GLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGG---N------------VNSTAVTSESGSFSIVL 88 (141)
Q Consensus 33 ~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g---~------------~~~eAtTd~~G~F~i~v 88 (141)
..+.|+|+|. |..+ .+++||.|++=-.+ . +-+.-.||.+|.|++..
T Consensus 98 ~~l~l~G~V~-D~~G---------~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~T 158 (247)
T cd03462 98 KPLLFRGTVK-DLAG---------APVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRT 158 (247)
T ss_pred CEEEEEEEEE-cCCC---------CCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEE
Confidence 5588999998 5322 38899999985543 1 34456788888887653
No 27
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=64.01 E-value=33 Score=28.53 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=32.7
Q ss_pred eEEEEEEEEEccCCCccccccccCCCcCCCeEEEEeCC---e-----------------eeeeEEeCCceeEEEEe
Q 047693 33 GLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGG---N-----------------VNSTAVTSESGSFSIVL 88 (141)
Q Consensus 33 ~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g---~-----------------~~~eAtTd~~G~F~i~v 88 (141)
..+.|+|+|. |. . + .+++||.|++=-.+ . ..+.-.||.+|.|++..
T Consensus 64 ~~i~l~G~V~-D~--~-G------~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~T 129 (220)
T cd03464 64 ERIIVHGRVL-DE--D-G------RPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRT 129 (220)
T ss_pred CEEEEEEEEE-CC--C-C------CCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEE
Confidence 4588999999 42 2 2 48999999995542 1 23456889999988853
No 28
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=63.61 E-value=6.6 Score=27.32 Aligned_cols=25 Identities=28% Similarity=0.285 Sum_probs=18.5
Q ss_pred CchHHHHHHHHHHHHHhhhhhhccc
Q 047693 1 MGLKSLVYAVILVAAMGALMADAQG 25 (141)
Q Consensus 1 m~~~~~~~~~ll~a~~~~~~~~~~l 25 (141)
||.|-|+..+|-+|+++..++-.|.
T Consensus 1 MA~Kl~vialLC~aLva~vQ~APQY 25 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSAPQY 25 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhcCccc
Confidence 8888777777768888877776665
No 29
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=61.96 E-value=26 Score=29.78 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=33.1
Q ss_pred ceEEEEEEEEEccCCCccccccccCCCcCCCeEEEEeCC---------------eeeeeEEeCCceeEEEE
Q 047693 32 LGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGG---------------NVNSTAVTSESGSFSIV 87 (141)
Q Consensus 32 ~~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g---------------~~~~eAtTd~~G~F~i~ 87 (141)
...+.|+|+|. |..+ .+++||.|++=-.+ +.-+.-+||.+|.|++.
T Consensus 102 G~~l~l~G~V~-D~~G---------~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~ 162 (256)
T cd03458 102 GEPLFVHGTVT-DTDG---------KPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFR 162 (256)
T ss_pred CcEEEEEEEEE-cCCC---------CCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEE
Confidence 34588999998 4432 37899999995543 24456788999998774
No 30
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=61.17 E-value=26 Score=30.12 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=33.4
Q ss_pred ceEEEEEEEEEccCCCccccccccCCCcCCCeEEEEeCC---------------eeeeeEEeCCceeEEEE
Q 047693 32 LGLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGG---------------NVNSTAVTSESGSFSIV 87 (141)
Q Consensus 32 ~~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g---------------~~~~eAtTd~~G~F~i~ 87 (141)
...+.|+|+|. |..+ .+++||.|++=-.+ +.-+.-+||.+|.|++.
T Consensus 118 G~~l~v~G~V~-D~~G---------~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~ 178 (277)
T cd03461 118 GEPCFVHGRVT-DTDG---------KPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFR 178 (277)
T ss_pred CCEEEEEEEEE-cCCC---------CCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEE
Confidence 35688999998 4322 37999999986543 24556788999998874
No 31
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=61.14 E-value=35 Score=27.45 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=32.3
Q ss_pred eEEEEEEEEEccCCCccccccccCCCcCCCeEEEEeCC---e----------------eeeeEEeCCceeEEEEe
Q 047693 33 GLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGG---N----------------VNSTAVTSESGSFSIVL 88 (141)
Q Consensus 33 ~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g---~----------------~~~eAtTd~~G~F~i~v 88 (141)
..+.|+|+|. |.. + .+++||.|++=..+ . .-+.-.||.+|.|++..
T Consensus 35 ~~l~l~G~V~-D~~---g------~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~T 99 (185)
T cd03463 35 ERITLEGRVY-DGD---G------APVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTT 99 (185)
T ss_pred CEEEEEEEEE-CCC---C------CCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEEE
Confidence 4588999998 432 2 48999999996653 1 12245689999888764
No 32
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=61.14 E-value=17 Score=25.78 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=22.6
Q ss_pred CcCCCeEEE--EeCC-eeee---eEEeCCceeEEEEeCcc
Q 047693 58 VFPNAKVEL--QCGG-NVNS---TAVTSESGSFSIVLDPV 91 (141)
Q Consensus 58 ~fpnA~V~L--~C~g-~~~~---eAtTd~~G~F~i~v~~~ 91 (141)
+++|..|.+ .-.+ .+.. .++||.+|.+++.+...
T Consensus 38 pv~g~~V~f~~~~~~~~l~~~~~~~~Td~~G~a~~tltst 77 (100)
T PF02369_consen 38 PVPGQPVTFSSSSSGGTLSPTNTSATTDSNGIATVTLTST 77 (100)
T ss_dssp B-TS-EEEE--EESSSEES-CEE-EEE-TTSEEEEEEE-S
T ss_pred CCCCCEEEEEEcCCCcEEecCccccEECCCEEEEEEEEec
Confidence 679999999 5554 4444 48999999999998754
No 33
>PF12477 TraW_N: Sex factor F TraW protein N terminal
Probab=59.99 E-value=7.2 Score=23.36 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhhhhc-cccccccc
Q 047693 8 YAVILVAAMGALMADA-QGGVIGTL 31 (141)
Q Consensus 8 ~~~ll~a~~~~~~~~~-~lg~~~~~ 31 (141)
.++++++++..+.++| .||.+|-+
T Consensus 3 ~~~ll~~~~~~~~a~AkdLG~~G~~ 27 (31)
T PF12477_consen 3 LLALLALLLLSPSAHAKDLGVIGPT 27 (31)
T ss_pred HHHHHHHHHcCcccchhhccccccc
Confidence 4566777788877766 48876643
No 34
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=57.01 E-value=49 Score=25.86 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=32.5
Q ss_pred eEEEEEEEEEccCCCccccccccCCCcCCCeEEEEeCC---ee-----------------eeeEEeCCceeEEEEe
Q 047693 33 GLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGG---NV-----------------NSTAVTSESGSFSIVL 88 (141)
Q Consensus 33 ~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g---~~-----------------~~eAtTd~~G~F~i~v 88 (141)
..+.|+|+|. |. . + .+++||.|++=..+ .+ .+..+||.+|.|++..
T Consensus 14 ~~l~l~g~V~-D~--~-g------~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~T 79 (158)
T cd03459 14 ERIILEGRVL-DG--D-G------RPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRT 79 (158)
T ss_pred cEEEEEEEEE-CC--C-C------CCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEE
Confidence 4688999998 22 2 2 47899999995543 11 2456799999998864
No 35
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=55.55 E-value=50 Score=27.40 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=32.3
Q ss_pred eEEEEEEEEEccCCCccccccccCCCcCCCeEEEEeCC---e-----------------eeeeEEeCCceeEEEEe
Q 047693 33 GLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGG---N-----------------VNSTAVTSESGSFSIVL 88 (141)
Q Consensus 33 ~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g---~-----------------~~~eAtTd~~G~F~i~v 88 (141)
..+.|+|+|. |.. + .+++||.|++=-.+ . ..+...||.+|.|++..
T Consensus 59 ~~i~l~G~V~-D~~---g------~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~T 124 (220)
T TIGR02422 59 ERIIVHGRVL-DED---G------RPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRT 124 (220)
T ss_pred CEEEEEEEEE-CCC---C------CCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEE
Confidence 4588999998 432 1 48999999984432 1 24456789999988753
No 36
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.92 E-value=59 Score=27.25 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=35.0
Q ss_pred eEEEEEEEEEccCCCccccccccCCCcCCCeEEE-EeC--Ce----------------eeeeEEeCCceeEEEEe
Q 047693 33 GLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVEL-QCG--GN----------------VNSTAVTSESGSFSIVL 88 (141)
Q Consensus 33 ~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L-~C~--g~----------------~~~eAtTd~~G~F~i~v 88 (141)
..+.|+|+|+=..| .++++|.|++ ||. |+ ..+.+.||++|.|++..
T Consensus 71 e~i~l~G~VlD~~G----------~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~T 135 (226)
T COG3485 71 ERILLEGRVLDGNG----------RPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRT 135 (226)
T ss_pred ceEEEEEEEECCCC----------CCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEE
Confidence 57999999984443 3689999998 666 22 34668999999999864
No 37
>TIGR02513 type_III_yscB type III secretion system chaperone, YscB family. Members of this family include YscB of Yersinia and functionally equivalent (but differently named) proteins from type III secretion systems of other pathogens that affect animal cells. YscB acts, along with SycN (TIGR02503), as a chaperone for YopN, a key part of a complex that regulates type III secretion so it responds to contact with the eukaryotic target cell.
Probab=52.87 E-value=13 Score=29.36 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=26.3
Q ss_pred EeCCceeEEEEeCcchhhhhccCCCcEEEeccCccc
Q 047693 77 VTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLAT 112 (141)
Q Consensus 77 tTd~~G~F~i~v~~~~~~l~~l~~~C~vVV~SPl~~ 112 (141)
+-|.+|+|.|.+|+-. +-.....=+++..||++.
T Consensus 17 VAd~qG~Yhl~iD~~~--l~l~q~~sellletpL~~ 50 (139)
T TIGR02513 17 VADRQGVYHLTIDQHL--VMLAQHGSELVLETPLDA 50 (139)
T ss_pred ccCCCCceEEEEcCcE--EEeeccCceEEEeccccc
Confidence 4589999999999654 233457889999999864
No 38
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=52.50 E-value=63 Score=26.01 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=22.2
Q ss_pred eEEEEEEEEEccCCCcc--------c-cccccCCCcCCCeEEEEeCCe
Q 047693 33 GLIHIEGTLYYTVNGKI--------G-DLGQATPVFPNAKVELQCGGN 71 (141)
Q Consensus 33 ~~~~V~G~VyCdtc~~~--------g-f~t~ssp~fpnA~V~L~C~g~ 71 (141)
..++|+|.+- +..... . +.....+.++||+|.|...+.
T Consensus 26 ~~lVV~~~i~-~~~~~~~V~Ls~s~~~~~~~~~~~v~~A~V~i~~~~~ 72 (298)
T PF14054_consen 26 PKLVVEGYIT-NPGDPQTVRLSRSVPYFDNSPPEPVSGATVTIYEDGQ 72 (298)
T ss_pred CeEEEEEEEe-cCCCcEEEEEEEeecccCCCCCcccCCcEEEEEeCCC
Confidence 4577888765 222111 1 122233348999999988874
No 39
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=52.19 E-value=18 Score=26.93 Aligned_cols=30 Identities=17% Similarity=0.017 Sum_probs=24.0
Q ss_pred CCcCCCeEEEEeCC----eeeeeEEeCCceeEEE
Q 047693 57 PVFPNAKVELQCGG----NVNSTAVTSESGSFSI 86 (141)
Q Consensus 57 p~fpnA~V~L~C~g----~~~~eAtTd~~G~F~i 86 (141)
.+-+|.+|+|...+ +..++++||.+|..+-
T Consensus 14 ~PAagv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~ 47 (112)
T TIGR02962 14 KPAAGVPVTLYRLDGSGWTPLAEGVTNADGRCPD 47 (112)
T ss_pred ccCCCCEEEEEEecCCCeEEEEEEEECCCCCCcC
Confidence 56689999999863 4788999999988763
No 40
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=49.97 E-value=38 Score=29.43 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=30.2
Q ss_pred EEEEEEccCCCccccccccCCCcCCCeEEEEeCCeeeeeEEeCCceeEEEEeCcc
Q 047693 37 IEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPV 91 (141)
Q Consensus 37 V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g~~~~eAtTd~~G~F~i~v~~~ 91 (141)
|+|+|.=. . -.+++||+|.+.-.+ ..++||.+|.|...+.+.
T Consensus 298 i~G~V~d~---~-------g~pv~~A~V~v~~~~---~~~~td~~G~y~~~l~~G 339 (372)
T cd03868 298 VKGFVRDA---S-------GNPIEDATIMVAGID---HNVTTAKFGDYWRLLLPG 339 (372)
T ss_pred eEEEEEcC---C-------CCcCCCcEEEEEecc---cceEeCCCceEEecCCCE
Confidence 78887532 1 158999999998543 457999999997655433
No 41
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=47.49 E-value=47 Score=24.04 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=25.0
Q ss_pred cCCCeEEEEeCCeeeeeEEeCCceeEEEEeC-cch
Q 047693 59 FPNAKVELQCGGNVNSTAVTSESGSFSIVLD-PVQ 92 (141)
Q Consensus 59 fpnA~V~L~C~g~~~~eAtTd~~G~F~i~v~-~~~ 92 (141)
.+||.|.|-=.|.+.+.|.+| +|.+.|.++ +..
T Consensus 25 ~~gs~ValS~dg~l~G~ai~~-sG~ati~l~~~it 58 (81)
T PF03785_consen 25 VPGSYVALSQDGDLYGKAIVN-SGNATINLTNPIT 58 (81)
T ss_dssp STT-EEEEEETTEEEEEEE-B-TTEEEEE-SS--T
T ss_pred CCCcEEEEecCCEEEEEEEec-CceEEEECCcccC
Confidence 478888888888999999999 999999999 443
No 42
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=46.71 E-value=31 Score=34.94 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=30.5
Q ss_pred eEEEEEEEEEccCCCccccccccCCCcCCCeEEEEeCCeeeeeEEeCCceeEEEEe
Q 047693 33 GLIHIEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVL 88 (141)
Q Consensus 33 ~~~~V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g~~~~eAtTd~~G~F~i~v 88 (141)
.-|.|.|+|-=. +-..+.++|+|.+. -...+.||..|+|+++-
T Consensus 314 tgfSvtGRVl~g---------~~g~~l~gvvvlvn----gk~~~kTdaqGyykLen 356 (1165)
T KOG1948|consen 314 TGFSVTGRVLVG---------SKGLPLSGVVVLVN----GKSGGKTDAQGYYKLEN 356 (1165)
T ss_pred EEEEeeeeEEeC---------CCCCCccceEEEEc----CcccceEcccceEEeee
Confidence 346777777533 33457899999875 24557899999999876
No 43
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=46.32 E-value=24 Score=31.16 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=29.9
Q ss_pred EEEEEEccCCCccccccccCCCcCCCeEEEEeCCeeeeeEEeCCceeEEEEeCc
Q 047693 37 IEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDP 90 (141)
Q Consensus 37 V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g~~~~eAtTd~~G~F~i~v~~ 90 (141)
|+|.|.=. . -.++++|+|+++ + ....++||.+|.|...+.+
T Consensus 320 i~G~V~D~---~-------g~pi~~A~V~v~--g-~~~~~~Td~~G~y~~~l~~ 360 (395)
T cd03867 320 IKGFVKDK---D-------GNPIKGARISVR--G-IRHDITTAEDGDYWRLLPP 360 (395)
T ss_pred eEEEEEcC---C-------CCccCCeEEEEe--c-cccceEECCCceEEEecCC
Confidence 78888632 1 158999999997 2 2445899999999866543
No 44
>COG5455 Predicted integral membrane protein [Function unknown]
Probab=44.44 E-value=17 Score=28.37 Aligned_cols=22 Identities=45% Similarity=0.496 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhcc
Q 047693 3 LKSLVYAVILVAAMGALMADAQ 24 (141)
Q Consensus 3 ~~~~~~~~ll~a~~~~~~~~~~ 24 (141)
.|++++.++.++.+++|+|++|
T Consensus 2 mkrlv~~lla~s~~a~p~a~~q 23 (129)
T COG5455 2 MKRLVSALLAVSSVAAPMALAQ 23 (129)
T ss_pred chhHHHHHHHHHHhhcchhhcc
Confidence 4789999999999999999888
No 45
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=42.54 E-value=36 Score=30.29 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=27.8
Q ss_pred EEEEEEccCCCccccccccCCCcCCCeEEEEeCCeeeeeEEeCCceeEEEEe
Q 047693 37 IEGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVL 88 (141)
Q Consensus 37 V~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g~~~~eAtTd~~G~F~i~v 88 (141)
|+|+|.-+. | .+++||+|.++ + .....+||.+|.|--.+
T Consensus 318 I~G~V~D~~----g------~pi~~A~V~v~--g-~~~~~~T~~~G~y~r~l 356 (392)
T cd03864 318 IKGMVTDEN----N------NGIANAVISVS--G-ISHDVTSGTLGDYFRLL 356 (392)
T ss_pred EEEEEECCC----C------CccCCeEEEEE--C-CccceEECCCCcEEecC
Confidence 799996532 1 47999999996 2 23458899999993333
No 46
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=42.23 E-value=35 Score=34.57 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=32.4
Q ss_pred ccccCCCcCCCeEEEEeCC--eeeeeEEeCCceeEEEE
Q 047693 52 LGQATPVFPNAKVELQCGG--NVNSTAVTSESGSFSIV 87 (141)
Q Consensus 52 ~t~ssp~fpnA~V~L~C~g--~~~~eAtTd~~G~F~i~ 87 (141)
.+...|++++|++++.=++ ...-|+.||.+|.|++-
T Consensus 749 ~Gsi~Palega~Ikis~kkds~~~Iev~T~~~Gafk~G 786 (1165)
T KOG1948|consen 749 DGSIKPALEGAVIKISLKKDSDVVIEVITNKDGAFKIG 786 (1165)
T ss_pred cceeccCCCCcEEEEEecCCCceeEEEEEcCCCcEEec
Confidence 6788999999999999996 48999999999999973
No 47
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=41.01 E-value=41 Score=29.09 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=24.7
Q ss_pred CCcCCCeEEEEeCC--------------eeeeeEEeCCceeEEEEeC
Q 047693 57 PVFPNAKVELQCGG--------------NVNSTAVTSESGSFSIVLD 89 (141)
Q Consensus 57 p~fpnA~V~L~C~g--------------~~~~eAtTd~~G~F~i~v~ 89 (141)
+++|||+|..+=-+ ...-+..||++|.|++...
T Consensus 183 kPv~nA~V~v~~~n~~~~d~~a~~~~~ek~~~~~~TD~kG~~~fip~ 229 (264)
T COG5266 183 KPVPNATVEVEFDNIDTKDNRAKTGNTEKTALVQFTDDKGEVSFIPL 229 (264)
T ss_pred ccCCCcEEEEEEecccccccccccCCCCCcceEEEcCCCceEEEEEc
Confidence 68999999999222 1334578999999998853
No 48
>PF14731 Staphopain_pro: Staphopain proregion; PDB: 1X9Y_D.
Probab=35.50 E-value=33 Score=27.89 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=18.4
Q ss_pred EEeCCceeEEEEeCcchhhhhccCCCcEEEeccCccc
Q 047693 76 AVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLAT 112 (141)
Q Consensus 76 AtTd~~G~F~i~v~~~~~~l~~l~~~C~vVV~SPl~~ 112 (141)
--||.+|.|-++-| ..=++|.+||++.
T Consensus 116 i~t~~kgyy~~~en----------~ki~lv~kTP~~~ 142 (169)
T PF14731_consen 116 ILTNKKGYYVFEEN----------GKIKLVKKTPLST 142 (169)
T ss_dssp EEEETTEEE-EEET----------TEEEEEEE---TT
T ss_pred EEEcCcceEEeccC----------CcEEEEEcCCCcc
Confidence 56799999988876 4568899999974
No 49
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=33.89 E-value=30 Score=24.21 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=11.9
Q ss_pred eeeeEEeCCceeEEEEeC
Q 047693 72 VNSTAVTSESGSFSIVLD 89 (141)
Q Consensus 72 ~~~eAtTd~~G~F~i~v~ 89 (141)
-....+||++|.|+++..
T Consensus 10 ~~~RtWtD~tG~f~VeA~ 27 (70)
T PF03983_consen 10 SKTRTWTDRTGKFKVEAE 27 (70)
T ss_dssp --SEEEEBSSS--EEEEE
T ss_pred CcceEEEeCCCCEEEEEE
Confidence 345689999999999875
No 50
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=28.38 E-value=34 Score=24.56 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=13.8
Q ss_pred CCCeEEEE-------eCC-eeeeeEEeCCceeEEEEe
Q 047693 60 PNAKVELQ-------CGG-NVNSTAVTSESGSFSIVL 88 (141)
Q Consensus 60 pnA~V~L~-------C~g-~~~~eAtTd~~G~F~i~v 88 (141)
.++.|-|. ..+ .+. +.||++|.|+|+-
T Consensus 22 ~~~~Vgl~~~~d~~q~~~yqYw--t~td~~G~Fti~~ 56 (95)
T PF14686_consen 22 ANAVVGLAPPGDFQQNKGYQYW--TRTDSDGNFTIPN 56 (95)
T ss_dssp S-EEEEEE--------SS-EEE--EE--TTSEEE---
T ss_pred eeEEEEeeeccccccCCCCcEE--EEeCCCCcEEeCC
Confidence 45677776 554 244 5688999999974
No 51
>PF03117 Herpes_UL49_1: UL49 family; InterPro: IPR004339 UL49 proteins are present in the viral tegument at the surface of the nucleocapsid []. Many of the nonconserved tegument proteins of alpha-herpes viruses play important roles during different steps of the viral replication cycle, such as the shutoff of host cell functions by the vhs protein encoded by UL41 and the transcriptional activation of viral immediate-early genes by the UL48 gene product, VP16. UL49 of Human herpesvirus 1 (HHV-1) has been shown to directly interact with VP16. The UL49 gene products of HHV-1 and Bovine herpesvirus 1 exhibit virus-independent intercellular trafficking of unknown biological function but are dispensable for productive viral replication. Envelope glycoprotein M (gM) and the complex formed by glycoproteins E (gE) and I (gI) are involved in the secondary envelopment of Suid herpesvirus 1 (Pseudorabies virus, PrV) particles in the cytoplasm of infected cells. In the absence of the gE-gI complex and gM, envelopment is blocked and capsids surrounded by tegument proteins accumulate in the cytoplasm. The cytoplasmic domains of gE and gM specifically interact with the C-terminal part of the UL49 gene product of PrV suggesting a role for the protein in secondary envelopment during herpesvirus virion maturation [].; GO: 0016032 viral reproduction, 0019033 viral tegument
Probab=27.79 E-value=85 Score=26.88 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=37.0
Q ss_pred EEEEEccCCCccccccccCCCcCCCeEEEEeCCeeeeeEEeCCceeEEEEeCcchhhhhccCCCcEEEecc--CccccCc
Q 047693 38 EGTLYYTVNGKIGDLGQATPVFPNAKVELQCGGNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLVLKT--PLATCNS 115 (141)
Q Consensus 38 ~G~VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g~~~~eAtTd~~G~F~i~v~~~~~~l~~l~~~C~vVV~S--Pl~~Cn~ 115 (141)
+|++||+.|+++.+... |-. ...- -+..+...-.|+...|-.+.+-=+ ....+++|.= +-.+|..
T Consensus 150 tgriyCS~CGS~~l~~~--~l~-e~~~-~~~~g~~~iRAVi~~NAA~~v~~~---------~~~~DvIvPClgssrtC~~ 216 (245)
T PF03117_consen 150 TGRIYCSLCGSQRLRKE--RLY-EMYS-ADVGGIPRIRAVIGNNAACAVYDA---------SQTLDVIVPCLGSSRTCYS 216 (245)
T ss_pred CCCEEEccCCCCeeEEE--eee-eccc-cccCCceEEEEEcccCceeeEecC---------CceeeEEEeCCCCCccccc
Confidence 68999999999753221 111 1110 011222222788877777766433 2466777766 6567877
No 52
>PRK15241 putative fimbrial protein StaD; Provisional
Probab=26.59 E-value=1.3e+02 Score=24.21 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=28.1
Q ss_pred CchHHHHHHHHHHHHHhhhhhhcccccccccceEEEEEEEEEccCCCcc
Q 047693 1 MGLKSLVYAVILVAAMGALMADAQGGVIGTLLGLIHIEGTLYYTVNGKI 49 (141)
Q Consensus 1 m~~~~~~~~~ll~a~~~~~~~~~~lg~~~~~~~~~~V~G~VyCdtc~~~ 49 (141)
|..++..++..+++++..+.+.+.- +-+.++|.|-=.+|...
T Consensus 1 M~~~k~~~~~~~~~~~~~~~~~a~~-------~~V~f~G~vva~~C~i~ 42 (188)
T PRK15241 1 MKRNKYLLAASVLAMIFPLTSQAED-------INVDFTATVLATTCSMS 42 (188)
T ss_pred CcchHHHHHHHHHHHHhhhhhhccc-------eEEEEEEEEEecCceeE
Confidence 5556655555555555555555543 44899999999999883
No 53
>PRK15209 long polar fimbrial protein LpfA; Provisional
Probab=26.34 E-value=1.3e+02 Score=22.90 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=13.2
Q ss_pred eEEEEEEEEEccCCCc
Q 047693 33 GLIHIEGTLYYTVNGK 48 (141)
Q Consensus 33 ~~~~V~G~VyCdtc~~ 48 (141)
+-++++|.|.=.+|..
T Consensus 26 g~I~f~G~I~~~tC~v 41 (174)
T PRK15209 26 GTVKFTGEIVDAPCVV 41 (174)
T ss_pred cEEEEEEEEEcCcceE
Confidence 3489999998888876
No 54
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=26.18 E-value=1.3e+02 Score=20.57 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=24.1
Q ss_pred CcCCCeEEEEeCCee-----eeeEEeCCceeEEEEeCcc
Q 047693 58 VFPNAKVELQCGGNV-----NSTAVTSESGSFSIVLDPV 91 (141)
Q Consensus 58 ~fpnA~V~L~C~g~~-----~~eAtTd~~G~F~i~v~~~ 91 (141)
++||+.|.+.=.+.- ..+.+||.+|...+.+...
T Consensus 33 pv~~~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~~~ 71 (92)
T smart00634 33 PVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLTST 71 (92)
T ss_pred CcCCCEEEEEECCCceeeccCCeeeeCCCCEEEEEEECC
Confidence 567788877765421 2456899999999998744
No 55
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=26.15 E-value=50 Score=19.81 Aligned_cols=28 Identities=7% Similarity=0.017 Sum_probs=22.5
Q ss_pred EEccCCCccccccccCCCcCCCeEEEEeCC
Q 047693 41 LYYTVNGKIGDLGQATPVFPNAKVELQCGG 70 (141)
Q Consensus 41 VyCdtc~~~gf~t~ssp~fpnA~V~L~C~g 70 (141)
+-|..|... |+.... -+|...++++|..
T Consensus 3 i~Cp~C~~~-y~i~d~-~ip~~g~~v~C~~ 30 (36)
T PF13717_consen 3 ITCPNCQAK-YEIDDE-KIPPKGRKVRCSK 30 (36)
T ss_pred EECCCCCCE-EeCCHH-HCCCCCcEEECCC
Confidence 679999995 777665 4888889999983
No 56
>PF13115 YtkA: YtkA-like
Probab=24.86 E-value=1.6e+02 Score=19.52 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=24.9
Q ss_pred CCcCCCeEEEEeCC---------eeeeeEEeCCceeEEEEeC
Q 047693 57 PVFPNAKVELQCGG---------NVNSTAVTSESGSFSIVLD 89 (141)
Q Consensus 57 p~fpnA~V~L~C~g---------~~~~eAtTd~~G~F~i~v~ 89 (141)
.++.||.|+++..- ....++.....|.|+..+.
T Consensus 33 ~pv~~a~V~~~~~m~~~~g~~~~~~~~~~~~~~~G~Y~~~~~ 74 (86)
T PF13115_consen 33 KPVTDADVQFEIWMPDMEGMEPMTSKVELEETGPGVYEAEVT 74 (86)
T ss_pred CCCCCCEEEEEEEeCCCCCCCCCceeeeeecCCCCeEEEEee
Confidence 68999999999872 1344455568999999875
No 57
>PRK15205 long polar fimbrial protein LpfE; Provisional
Probab=23.85 E-value=1.3e+02 Score=23.07 Aligned_cols=44 Identities=23% Similarity=0.132 Sum_probs=26.2
Q ss_pred CchHHHHHHHHHHHHHhhhhhh-cccccccccceEEEEEEEEEccCCCc
Q 047693 1 MGLKSLVYAVILVAAMGALMAD-AQGGVIGTLLGLIHIEGTLYYTVNGK 48 (141)
Q Consensus 1 m~~~~~~~~~ll~a~~~~~~~~-~~lg~~~~~~~~~~V~G~VyCdtc~~ 48 (141)
|-+|++++.+.+.+.++.+++. +..+ --+-++++|.|.=++|..
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~----~~G~i~f~G~I~~~tC~i 45 (176)
T PRK15205 1 MKNKRALLPLALLLLTASGMAAPTDLG----PAGDIHFTITIKAKACEL 45 (176)
T ss_pred CchHHHHHHHHHHhcchhhhcCCCccc----CCeEEEEEEEEEecccee
Confidence 6778865555554443333332 1111 115589999999999986
No 58
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=23.74 E-value=94 Score=29.08 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=24.8
Q ss_pred CchHHHHHHHHHHHHHhhhhhhcccccccccceEEEEEEEEEccCC
Q 047693 1 MGLKSLVYAVILVAAMGALMADAQGGVIGTLLGLIHIEGTLYYTVN 46 (141)
Q Consensus 1 m~~~~~~~~~ll~a~~~~~~~~~~lg~~~~~~~~~~V~G~VyCdtc 46 (141)
||.|++++++|+..++.+-+++.. .+..+.|+|.-.=+.-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~------~v~~I~i~G~~~~~~~ 40 (803)
T PRK11067 1 MAMKKLLIASLLFSSATVYGAEGF------VVKDIHFEGLQRVAVG 40 (803)
T ss_pred CcHHHHHHHHHHHHHHHhhhcCce------EEEEEEEECccccCHH
Confidence 888998777777555433333211 3577888887654433
No 59
>cd04493 BRCA2DBD_OB1 BRCA2DBD_OB1: A subfamily of OB folds corresponding to the first OB fold (OB1) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated repair of double-strand DNA breaks. It stimulates the displacement of Replication protein A (RPA), the most abundant eukaryotic ssDNA binding protein. It also facilitates filament formation. Mutations that map throughout the BRCA2 protein are associated with breast cancer susceptibility. BRCA2 is a large nuclear protein and its most conserved region is the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro, and is composed of five structural domains, three of which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and OB3 are arranged in tandem, and their mode of binding can be considered qualitatively similar to two OB folds of RPA1, DBD-A and DBD-B (the major DBDs of RPA). BRCA2DBD OB1 binds DNA weakly.
Probab=23.18 E-value=41 Score=25.03 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=34.4
Q ss_pred CceeEEEEeCcchhhhhccCCCcEEEeccCccccCcCCCCCCceecce
Q 047693 80 ESGSFSIVLDPVQIVVSSLLNDCCLVLKTPLATCNSNLPSAGDLFSPL 127 (141)
Q Consensus 80 ~~G~F~i~v~~~~~~l~~l~~~C~vVV~SPl~~Cn~~Lp~~g~L~s~l 127 (141)
.+|||+|-..-|. .++.+....++.|-+=+.-|.+.|-+...=.||+
T Consensus 28 tDGWYsi~a~lD~-~L~~~l~~gkl~vGqKL~i~GA~l~~~~~~~spl 74 (100)
T cd04493 28 TDGWYSIRAQLDP-PLTNLVRKGKLRVGQKLRICGAELLGSANPCSPL 74 (100)
T ss_pred ecCeEEEEEEeCH-HHHHHHHcCCeecccEEEEECceeecCCCCcCcc
Confidence 4699999998664 4666677888888888888888776554444554
No 60
>PRK09733 putative fimbrial protein; Provisional
Probab=22.63 E-value=1.8e+02 Score=22.35 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=13.7
Q ss_pred eEEEEEEEEEccCCCc
Q 047693 33 GLIHIEGTLYYTVNGK 48 (141)
Q Consensus 33 ~~~~V~G~VyCdtc~~ 48 (141)
+-++++|.|.=.+|..
T Consensus 26 G~i~f~G~I~~~tC~i 41 (181)
T PRK09733 26 GIVKFKGEVISAPCSI 41 (181)
T ss_pred CEEEEEEEEEecceee
Confidence 4599999999888885
No 61
>PRK15307 major fimbrial protein StkA; Provisional
Probab=22.06 E-value=1.7e+02 Score=23.23 Aligned_cols=43 Identities=19% Similarity=0.116 Sum_probs=24.3
Q ss_pred CchHHHHHHHHHHHHHh-hhhhhcccccccccceEEEEEEEEEccCCCc
Q 047693 1 MGLKSLVYAVILVAAMG-ALMADAQGGVIGTLLGLIHIEGTLYYTVNGK 48 (141)
Q Consensus 1 m~~~~~~~~~ll~a~~~-~~~~~~~lg~~~~~~~~~~V~G~VyCdtc~~ 48 (141)
|-+|+.++..++++.+. ..++.+.. --+-++++|.|.=.+|..
T Consensus 1 m~~~~~~l~~~~~~~~~~~~~~aa~~-----~~g~I~F~G~I~~~tC~I 44 (201)
T PRK15307 1 MFLKKYGLAAAVAMTLSASSAMAADP-----DTGTITFHGLVTNNTCNI 44 (201)
T ss_pred CchHHHHHHHHHHHHHhhhhhhcccC-----CCCEEEEEEEEeccceEE
Confidence 66677655444433332 22211111 124599999999888875
No 62
>PRK15214 fimbrial protein PefA; Provisional
Probab=20.36 E-value=1.9e+02 Score=22.96 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=14.2
Q ss_pred eEEEEEEEEEccCCCc
Q 047693 33 GLIHIEGTLYYTVNGK 48 (141)
Q Consensus 33 ~~~~V~G~VyCdtc~~ 48 (141)
+.++.+|.|.=.+|..
T Consensus 23 gtI~F~G~Iv~~tC~V 38 (172)
T PRK15214 23 NEVTFLGSVSATTCDL 38 (172)
T ss_pred cEEEEEEEEEcCCceE
Confidence 4599999999999988
No 63
>KOG2397 consensus Protein kinase C substrate, 80 KD protein, heavy chain [Signal transduction mechanisms]
Probab=20.30 E-value=1.1e+02 Score=28.53 Aligned_cols=36 Identities=33% Similarity=0.600 Sum_probs=24.1
Q ss_pred CeEEEEeCCeeeeeEEeCCceeEEEEeCcchhhhhccCCCcEEE--eccCccccCcCC
Q 047693 62 AKVELQCGGNVNSTAVTSESGSFSIVLDPVQIVVSSLLNDCCLV--LKTPLATCNSNL 117 (141)
Q Consensus 62 A~V~L~C~g~~~~eAtTd~~G~F~i~v~~~~~~l~~l~~~C~vV--V~SPl~~Cn~~L 117 (141)
|+|.|+|+...--. . .++ .+.|+-. +.|| +.|++.-
T Consensus 435 a~v~v~Cg~e~~i~-----------s---v~E-----p~kCeY~~~~~tP-aaC~~~~ 472 (480)
T KOG2397|consen 435 ATVTVRCGLENEIV-----------S---VTE-----PSKCEYLFELVTP-AACNEDF 472 (480)
T ss_pred eeEEEEecccceee-----------e---ccc-----cccceeeeEeccc-ccCCcch
Confidence 78999999532111 1 234 3899985 9999 4599853
No 64
>PRK15289 lpfA fimbrial protein; Provisional
Probab=20.05 E-value=2.1e+02 Score=22.12 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=12.9
Q ss_pred eEEEEEEEEEccCCCc
Q 047693 33 GLIHIEGTLYYTVNGK 48 (141)
Q Consensus 33 ~~~~V~G~VyCdtc~~ 48 (141)
+.++++|.|.=.+|..
T Consensus 26 G~I~f~G~I~~~tC~I 41 (190)
T PRK15289 26 GVVHFVGEIVDTTCEV 41 (190)
T ss_pred CEEEEEEEEecceeEE
Confidence 3499999998778875
Done!