BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047694
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 251 bits (640), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 187/321 (58%), Gaps = 38/321 (11%)
Query: 10 YLDQNLAKHINDALEQPLHMGVPRIEAHKFIP-FYEHDDSKNDTLLKFAKLDFNRVQLPH 68
+L L + + ALEQ LH GVPR+E FI Y+ + SKN+ LL+FAKLDFN +Q+ H
Sbjct: 181 HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLH 240
Query: 69 QQELAYITRW------VSTYSYSRDRTVEMYLWSVAQYFEPHFSR--------------- 107
+QELA ++RW V+T Y+RDR VE Y W++ YFEP +S+
Sbjct: 241 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV 300
Query: 108 DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSY 167
DD +DAYGT+ EL ++TDA++RWDIN I LP+YMK + A+ + + + EL+ GRS+
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 360
Query: 168 SVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVT------------GTYIAGI 215
V + MK V R Y VE+ WF EGY PP E +SNA+ T G A
Sbjct: 361 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATE 420
Query: 216 DAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEF 271
+EWL PKI+ AS + R+I D A E+ RG +A+ +E M++YG S +E +F
Sbjct: 421 QDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKF 480
Query: 272 KKMIADGWKDINEECMRPTIV 292
+ M WKDINE +RPT V
Sbjct: 481 QNMAETAWKDINEGLLRPTPV 501
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 251 bits (640), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 187/321 (58%), Gaps = 38/321 (11%)
Query: 10 YLDQNLAKHINDALEQPLHMGVPRIEAHKFIP-FYEHDDSKNDTLLKFAKLDFNRVQLPH 68
+L L + + ALEQ LH GVPR+E FI Y+ + SKN+ LL+FAKLDFN +Q+ H
Sbjct: 181 HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLH 240
Query: 69 QQELAYITRW------VSTYSYSRDRTVEMYLWSVAQYFEPHFSR--------------- 107
+QELA ++RW V+T Y+RDR VE Y W++ YFEP +S+
Sbjct: 241 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV 300
Query: 108 DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSY 167
DD +DAYGT+ EL ++TDA++RWDIN I LP+YMK + A+ + + + EL+ GRS+
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 360
Query: 168 SVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVT------------GTYIAGI 215
V + MK V R Y VE+ WF EGY PP E +SNA+ T G A
Sbjct: 361 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATE 420
Query: 216 DAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEF 271
+EWL PKI+ AS + R+I D A E+ RG +A+ +E M++YG S +E +F
Sbjct: 421 QDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKF 480
Query: 272 KKMIADGWKDINEECMRPTIV 292
+ M WKDINE +RPT V
Sbjct: 481 QNMAETAWKDINEGLLRPTPV 501
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 250 bits (639), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 187/321 (58%), Gaps = 38/321 (11%)
Query: 10 YLDQNLAKHINDALEQPLHMGVPRIEAHKFIP-FYEHDDSKNDTLLKFAKLDFNRVQLPH 68
+L L + + ALEQ LH GVPR+E FI Y+ + SKN+ LL+FAKLDFN +Q+ H
Sbjct: 181 HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLH 240
Query: 69 QQELAYITRW------VSTYSYSRDRTVEMYLWSVAQYFEPHFSR--------------- 107
+QELA ++RW V+T Y+RDR VE Y W++ YFEP +S+
Sbjct: 241 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV 300
Query: 108 DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSY 167
DD +DAYGT+ EL ++TDA++RWDIN I LP+YMK + A+ + + + EL+ GRS+
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 360
Query: 168 SVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVT------------GTYIAGI 215
V + MK V R Y VE+ WF EGY PP E +SNA+ T G A
Sbjct: 361 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATE 420
Query: 216 DAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEF 271
+EWL PKI+ AS + R+I D A E+ RG +A+ +E M++YG S +E +F
Sbjct: 421 QDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKF 480
Query: 272 KKMIADGWKDINEECMRPTIV 292
+ M WKDINE +RPT V
Sbjct: 481 QNMAETAWKDINEGLLRPTPV 501
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 250 bits (639), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 187/321 (58%), Gaps = 38/321 (11%)
Query: 10 YLDQNLAKHINDALEQPLHMGVPRIEAHKFIP-FYEHDDSKNDTLLKFAKLDFNRVQLPH 68
+L L + + ALEQ LH GVPR+E FI Y+ + SKN+ LL+FAKLDFN +Q+ H
Sbjct: 168 HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLH 227
Query: 69 QQELAYITRW------VSTYSYSRDRTVEMYLWSVAQYFEPHFSR--------------- 107
+QELA ++RW V+T Y+RDR VE Y W++ YFEP +S+
Sbjct: 228 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV 287
Query: 108 DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSY 167
DD +DAYGT+ EL ++TDA++RWDIN I LP+YMK + A+ + + + EL+ GRS+
Sbjct: 288 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 347
Query: 168 SVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVT------------GTYIAGI 215
V + MK V R Y VE+ WF EGY PP E +SNA+ T G A
Sbjct: 348 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATE 407
Query: 216 DAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEF 271
+EWL PKI+ AS + R+I D A E+ RG +A+ +E M++YG S +E +F
Sbjct: 408 QDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKF 467
Query: 272 KKMIADGWKDINEECMRPTIV 292
+ M WKDINE +RPT V
Sbjct: 468 QNMAETAWKDINEGLLRPTPV 488
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 250 bits (639), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 187/321 (58%), Gaps = 38/321 (11%)
Query: 10 YLDQNLAKHINDALEQPLHMGVPRIEAHKFIP-FYEHDDSKNDTLLKFAKLDFNRVQLPH 68
+L L + + ALEQ LH GVPR+E FI Y+ + SKN+ LL+FAKLDFN +Q+ H
Sbjct: 183 HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLH 242
Query: 69 QQELAYITRW------VSTYSYSRDRTVEMYLWSVAQYFEPHFSR--------------- 107
+QELA ++RW V+T Y+RDR VE Y W++ YFEP +S+
Sbjct: 243 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV 302
Query: 108 DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSY 167
DD +DAYGT+ EL ++TDA++RWDIN I LP+YMK + A+ + + + EL+ GRS+
Sbjct: 303 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 362
Query: 168 SVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVT------------GTYIAGI 215
V + MK V R Y VE+ WF EGY PP E +SNA+ T G A
Sbjct: 363 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATE 422
Query: 216 DAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEF 271
+EWL PKI+ AS + R+I D A E+ RG +A+ +E M++YG S +E +F
Sbjct: 423 QDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKF 482
Query: 272 KKMIADGWKDINEECMRPTIV 292
+ M WKDINE +RPT V
Sbjct: 483 QNMAETAWKDINEGLLRPTPV 503
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 250 bits (639), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 187/321 (58%), Gaps = 38/321 (11%)
Query: 10 YLDQNLAKHINDALEQPLHMGVPRIEAHKFIP-FYEHDDSKNDTLLKFAKLDFNRVQLPH 68
+L L + + ALEQ LH GVPR+E FI Y+ + SKN+ LL+FAKLDFN +Q+ H
Sbjct: 183 HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLH 242
Query: 69 QQELAYITRW------VSTYSYSRDRTVEMYLWSVAQYFEPHFSR--------------- 107
+QELA ++RW V+T Y+RDR VE Y W++ YFEP +S+
Sbjct: 243 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIV 302
Query: 108 DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSY 167
DD +DAYGT+ EL ++TDA++RWDIN I LP+YMK + A+ + + + EL+ GRS+
Sbjct: 303 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 362
Query: 168 SVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVT------------GTYIAGI 215
V + MK + R Y VE+ WF EGY PP E +SNA+ T G A
Sbjct: 363 IVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGMKSATE 422
Query: 216 DAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEF 271
+EWL PKI+ AS + R+I D A E+ RG +A+ +E M++YG S +E +F
Sbjct: 423 QDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKF 482
Query: 272 KKMIADGWKDINEECMRPTIV 292
+ M WKDINE +RPT V
Sbjct: 483 QNMAETAWKDINEGLLRPTPV 503
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 249 bits (636), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 187/321 (58%), Gaps = 38/321 (11%)
Query: 10 YLDQNLAKHINDALEQPLHMGVPRIEAHKFIP-FYEHDDSKNDTLLKFAKLDFNRVQLPH 68
+L L + + ALEQ LH GVPR+E FI Y+ + SKN+ LL+FAKLDFN +Q+ H
Sbjct: 181 HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLH 240
Query: 69 QQELAYITRW------VSTYSYSRDRTVEMYLWSVAQYFEPHFSR--------------- 107
+QELA ++RW V+T Y+RDR VE Y W++ YFEP +S+
Sbjct: 241 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV 300
Query: 108 DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSY 167
DD +DAYGT+ EL ++TDA++RWDIN I LP+YMK + A+ + + + EL+ GRS+
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 360
Query: 168 SVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVT------------GTYIAGI 215
V + MK V R Y VE+ WF EGY PP E +SNA+ T G A
Sbjct: 361 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATE 420
Query: 216 DAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEF 271
+EWL PKI+ AS + R+I D A E+ RG +A+ +E M++YG S +E +F
Sbjct: 421 QDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKF 480
Query: 272 KKMIADGWKDINEECMRPTIV 292
+ M WKDINE +RPT V
Sbjct: 481 QNMAETAWKDINEGLLRPTPV 501
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 186/321 (57%), Gaps = 38/321 (11%)
Query: 10 YLDQNLAKHINDALEQPLHMGVPRIEAHKFIP-FYEHDDSKNDTLLKFAKLDFNRVQLPH 68
+L L + + ALEQ LH GVPR+E FI Y+ + SKN+ LL+FAKLDFN +Q+ H
Sbjct: 181 HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLH 240
Query: 69 QQELAYITRW------VSTYSYSRDRTVEMYLWSVAQYFEPHFSR--------------- 107
+QELA ++RW V+T Y+RDR VE Y ++ YFEP +S+
Sbjct: 241 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIV 300
Query: 108 DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSY 167
DD +DAYGT+ EL ++TDA++RWDIN I LP+YMK + A+ + + + EL+ GRS+
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 360
Query: 168 SVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVT------------GTYIAGI 215
V + MK V R Y VE+ WF EGY PP E +SNA+ T G A
Sbjct: 361 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATE 420
Query: 216 DAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEF 271
+EWL PKI+ AS + R+I D A E+ RG +A+ +E M++YG S +E +F
Sbjct: 421 QDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKF 480
Query: 272 KKMIADGWKDINEECMRPTIV 292
+ M WKDINE +RPT V
Sbjct: 481 QNMAETAWKDINEGLLRPTPV 501
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 244 bits (623), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 186/321 (57%), Gaps = 38/321 (11%)
Query: 10 YLDQNLAKHINDALEQPLHMGVPRIEAHKFIP-FYEHDDSKNDTLLKFAKLDFNRVQLPH 68
+L L + + ALEQ LH GVPR+E FI Y+ + SKN+ LL+FAKLDFN +Q+ H
Sbjct: 181 HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLH 240
Query: 69 QQELAYITRW------VSTYSYSRDRTVEMYLWSVAQYFEPHFSR--------------- 107
+QELA ++RW V+T Y+RDR VE Y ++ YFEP +S+
Sbjct: 241 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIV 300
Query: 108 DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSY 167
DD +DAYGT+ EL ++TDA++RWDIN I LP+YMK + A+ + + + EL+ GRS+
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 360
Query: 168 SVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVT------------GTYIAGI 215
V + MK V R Y VE+ WF EGY PP E +SNA+ T G A
Sbjct: 361 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATE 420
Query: 216 DAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEF 271
+EWL PKI+ AS + R+I D A E+ RG +A+ +E M++YG S +E +F
Sbjct: 421 QDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKF 480
Query: 272 KKMIADGWKDINEECMRPTIV 292
+ M WKDINE +RPT V
Sbjct: 481 QNMAETAWKDINEGLLRPTPV 501
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 234 bits (596), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 122/321 (38%), Positives = 182/321 (56%), Gaps = 38/321 (11%)
Query: 11 LDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQ 70
LD L++ ++ AL+Q + G+PR+EA ++ Y+ +S N LL+FAK+DFN +Q H++
Sbjct: 189 LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRK 248
Query: 71 ELAYITRW------VSTYSYSRDRTVEMYLWSVAQYFEPHFSR---------------DD 109
EL+ I RW Y+RDR VE Y W YFEP +S DD
Sbjct: 249 ELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDD 308
Query: 110 AYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSV 169
YD+Y T EL +T+A+ERWDI CI E+PEYMKP + AL + ++E+ +AE GR Y V
Sbjct: 309 TYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRV 368
Query: 170 SFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTY-------------IAGID 216
+ K+ M +A++Y VEA+W + Y P F+E +NA+ T Y I +
Sbjct: 369 EYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPE 428
Query: 217 AYEWLRSQPKIMTASFTLSRLIADLAEQERGHV----ASVVESYMKEYGTSGEETAEEFK 272
++W S PKI+ AS + R + D+AE + H S +E YM+EYG + +E + F
Sbjct: 429 TFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFN 488
Query: 273 KMIADGWKDINEECMRPTIVP 293
K + WKD+N+E ++PT +P
Sbjct: 489 KHVESAWKDLNQEFLKPTEMP 509
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 152/315 (48%), Gaps = 41/315 (13%)
Query: 9 NYLDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPH 68
N +D+NL I +L+ PLH + +EA FI Y N + + AKL+FN +Q H
Sbjct: 182 NEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATH 241
Query: 69 QQELAYITRWVSTYSYS------RDRTVEMYLWSVAQYFEPH---FSR------------ 107
QQEL ++RW S + RDR VE + W+V FEPH + R
Sbjct: 242 QQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGM-FEPHQHGYQRKMAATIIVLATV 300
Query: 108 -DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRS 166
DD YD YGTL EL FTD +RWD I+ LP YM+ + + N + ++ +E
Sbjct: 301 IDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGF 360
Query: 167 YSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERM--------SNAIVTGTYIAGIDA- 217
+ + + + + + AYF EA+W+H GY P DE + S AI++ TY +A
Sbjct: 361 FCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANAS 420
Query: 218 -----YEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETA 268
+ L I+ + + RL DL E RG V ++ YMKE S EE
Sbjct: 421 HDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAV 480
Query: 269 EEFKKMIADGWKDIN 283
E K +I + WKD+N
Sbjct: 481 EHVKFLIREAWKDMN 495
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/320 (33%), Positives = 158/320 (49%), Gaps = 40/320 (12%)
Query: 11 LDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQ 70
+ + LA+ +N ALE PLH R+EA I Y + N LL+ A LD+N +Q +Q+
Sbjct: 187 IGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQR 246
Query: 71 ELAYITRW------VSTYSYSRDRTVEMYLWSVAQYFEPHFSR---------------DD 109
+L +RW + ++RDR +E + W+V FEP +S DD
Sbjct: 247 DLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDD 306
Query: 110 AYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELN-NELAEEGRSYS 168
YD YGTL EL FTDAVERWD+N I++LP+YMK F AL N +E+ + L ++G +
Sbjct: 307 IYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENIL 366
Query: 169 VSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGT--------YIAGI----- 215
TK + A+ EA+W + P FD+ NA + + Y A +
Sbjct: 367 PYLTK-AWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKK 425
Query: 216 DAYEWLRSQPKIMTASFTLSRLIADL----AEQERGHVASVVESYMKEYGTSGEETAEEF 271
+ E L+ I++ + RL DL AE RG A+ V YM+ G S E E
Sbjct: 426 EEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESV 485
Query: 272 KKMIADGWKDINEECMRPTI 291
+I + WK +N+E + ++
Sbjct: 486 MNLIDETWKKMNKEKLGGSL 505
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 155/325 (47%), Gaps = 44/325 (13%)
Query: 12 DQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQE 71
D NL I ALE P H V A FI Y+ N T+L+ AKLDFN VQ QQE
Sbjct: 206 DINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQE 265
Query: 72 LAYITRW------VSTYSYSRDRTVEMYLWS--VAQYFEPHFSR-------------DDA 110
L +RW V + RDR VE Y W+ V + + + R DD
Sbjct: 266 LKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDV 325
Query: 111 YDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSVS 170
+D YGTL EL+ FT A++RWDI + +LP YM+ + AL N +E+ + + S
Sbjct: 326 FDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTP 385
Query: 171 FTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYIAGI--------------- 215
+ + + G+ +Y +EA+W+++G+ P +E M N+ ++ I GI
Sbjct: 386 YLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWIS---IGGIPILSHLFFRLTDSIE 442
Query: 216 -DAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEE 270
+A E + I+ AS T+ RL D+ E ERG V V+ YM E S EE E
Sbjct: 443 EEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREH 502
Query: 271 FKKMIADGWKDINEECMRPTIVPNF 295
+ +I WK +N+E M + F
Sbjct: 503 VRSLIDQTWKMMNKEMMTSSFSKYF 527
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 144 bits (362), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 163/343 (47%), Gaps = 54/343 (15%)
Query: 13 QNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSK------------NDTLLKFAKLD 60
QNL++ I AL+ H VPR+EA ++ Y D ++ N+ L+ KLD
Sbjct: 439 QNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLD 498
Query: 61 FNRVQLPHQQELAYITRW-----VSTYSYSRDRTVEMYLWSVAQYFEPHFSR-------- 107
FN +Q HQ+E+ +T W + ++++R+R +E Y A +EP +++
Sbjct: 499 FNIIQSIHQEEMKNVTSWFRDSGLPLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKV 558
Query: 108 -------DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNEL 160
DD YD YGTL EL+ FT+AV RWD++ LP+YMK + + E+ E
Sbjct: 559 ACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVAWEA 618
Query: 161 AEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVT-GTYI---AGID 216
+E VSF + + Y+ EA+W Y+P DE + N I + G I +G+
Sbjct: 619 EKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVL 678
Query: 217 AYEW-LRSQPKIMTASFTLSRLIADL---------------AEQERGHVASVVESYMKEY 260
+ L SQ + + R++ +L AE+ RG +AS +E YMK++
Sbjct: 679 IMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDH 738
Query: 261 GTSGEETA-EEFKKMIADGWKDINEECMRPTIVPNFQCDSLML 302
EE A + ++ K++ E ++P VP F C ++
Sbjct: 739 PECTEEEALDHIYSILEPAVKELTREFLKPDDVP-FACKKMLF 780
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 152/315 (48%), Gaps = 42/315 (13%)
Query: 11 LDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQ 70
+D +L I +L+ PLH + R A +I +Y N +L+ A LD N VQ Q+
Sbjct: 178 VDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQE 237
Query: 71 ELAYITRW------VSTYSYSRDRTVEMYLWSVAQYFEP--HFSR--------------D 108
EL RW V ++RDR VE Y W+ EP H S D
Sbjct: 238 ELKESFRWWRNTGFVEKLPFARDRLVECYFWNTG-IIEPRQHASARIMMGKVNALITVID 296
Query: 109 DAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYS 168
D YD YGTL EL FTD + RWDIN I +LP+YM+ F AL+N D+ + ++ +E
Sbjct: 297 DIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNV 356
Query: 169 VSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNA--------IVTGTYIAGIDAY-- 218
+ + + +A Y VEA+WF+ G+ P +E + N+ ++T + D++
Sbjct: 357 IPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTK 416
Query: 219 EWLRSQPK----IMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEE 270
E + S K + +SF L RL DL E RG V ++ YM +Y S E +
Sbjct: 417 ETVDSLYKYHDLVRWSSFVL-RLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKH 475
Query: 271 FKKMIADGWKDINEE 285
K +IA+ WK +N E
Sbjct: 476 VKWLIAEVWKKMNAE 490
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 164/333 (49%), Gaps = 58/333 (17%)
Query: 13 QNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDS------------KNDTLLKFAKLD 60
+N+ + AL+ P H +PR+EA +I Y DD N+ L+ AKLD
Sbjct: 411 KNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLD 470
Query: 61 FNRVQLPHQQELAYITRW-----VSTYSYSRDRTVEMYLWSVAQYFEPHFSR-------- 107
FN+VQ HQ EL + RW + +++R+R E+Y + FEP FS+
Sbjct: 471 FNKVQSIHQTELQDLRRWWKSSGFTDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKT 530
Query: 108 -------DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNEL 160
DD YDA+G+L +L+ FT++V+RWD++ + ++P+ MK F N F N++
Sbjct: 531 SNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTF----NDI 586
Query: 161 AEEGRSYS----VSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIV-----TGTY 211
A+EGR + + +++ K AY EA+W Y+P F+E + NA V T
Sbjct: 587 AKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVL 646
Query: 212 IAGIDAYEWLRSQ--PKIMTASFTL------SRLIADL----AEQERGHVASVVESYMKE 259
I+ + E L + KI S L RL+ D AE+ +G VAS ++ YMK+
Sbjct: 647 ISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKD 706
Query: 260 Y-GTSGEETAEEFKKMIADGWKDINEECMRPTI 291
+ S EE + ++ + +++N E + I
Sbjct: 707 HPKISEEEALQHVYSVMENALEELNREFVNNKI 739
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/363 (28%), Positives = 162/363 (44%), Gaps = 70/363 (19%)
Query: 3 KALTIQNYLDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHD------------DSKN 50
+AL + + L K I +E P HM +PR+EA +I Y+ + N
Sbjct: 372 EALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSLSN 431
Query: 51 DTLLKFAKLDFNRVQLPHQQELAYITRW-----VSTYSYSRDRTVEMYLWSVAQYFEPHF 105
L+ AKLDFN VQ HQ+EL +TRW ++ +++R R E+Y S FEP +
Sbjct: 432 SKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMADINFTRHRVAEVYFSSAT--FEPEY 489
Query: 106 SR---------------DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALS 150
S DD D + TL EL+SFT+ V+RWD + + E+PE M+ F
Sbjct: 490 SATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWF 549
Query: 151 NPFDELNNELAE-EGRSYSVSFTKDMMKGVAR-------AYFVEAQWFHEGYMPPFDERM 202
+E+NN++ + +GR DM+ + + Y E +W GY+P F+E +
Sbjct: 550 KLMEEVNNDVVKVQGR--------DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYL 601
Query: 203 SN-AIVTGTYIAGI------------DAYEWLRSQPKIMTASFTLS-RLIADL----AEQ 244
AI G + D E + P M +LS RL D AE+
Sbjct: 602 KTYAISVGLGPCTLQPILLMGELVKDDVVEKVH-YPSNMFELVSLSWRLTNDTKTYQAEK 660
Query: 245 ERGHVASVVESYMKEY-GTSGEETAEEFKKMIADGWKDINEECMRPTIVPNFQCDSLMLL 303
RG AS + YMK+ G + E+ + +++ K+ + E +P+ C S +
Sbjct: 661 ARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFN 720
Query: 304 LTL 306
L L
Sbjct: 721 LRL 723
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
Query: 13 QNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDS-------------KNDTLLKFAKL 59
++L I ALE P + +PR+E +I Y ++ N+ L+ AK
Sbjct: 385 KDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQ 444
Query: 60 DFNRVQLPHQQELAYITRW-----VSTYSYSRDRTVEMYLWSVAQYFEPHFSRD 108
D+N Q HQ E +W +S + R +E Y + A FE S +
Sbjct: 445 DYNNCQAQHQLEWDIFQKWYEENRLSEWGVRRSELLECYYLAAATIFESERSHE 498
>pdb|2W82|A Chain A, The Structure Of Arda
pdb|2W82|B Chain B, The Structure Of Arda
pdb|2W82|C Chain C, The Structure Of Arda
pdb|2W82|D Chain D, The Structure Of Arda
Length = 165
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 112 DAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSVSF 171
D Y ++GEL W++ +SELPE ++ SAL F + EL+E +
Sbjct: 58 DEYTSIGELNRL------WEM--VSELPEELQSELSALLTHFSSI-EELSEHQEDIIIHS 108
Query: 172 TKDMMKGVARAYFVEA 187
D M VAR Y E
Sbjct: 109 DCDDMYDVARYYIEET 124
>pdb|2FVT|A Chain A, Nmr Structure Of The Rpa2829 Protein From Rhodopseudomonas
Palustris: Northeast Structural Genomics Target Rpr43
Length = 135
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 16/65 (24%)
Query: 103 PHFSRDDAYDAYGT----------LGELRSFTDAVERWDINCISELPEYMKPLFSALSNP 152
PHF R A DAYG G L DAV WD+ ++ Y +L
Sbjct: 8 PHFPRTAAIDAYGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPEQIDRY------SLQRV 61
Query: 153 FDELN 157
FD N
Sbjct: 62 FDNAN 66
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 143 KPLFSALSNPFDELNNELAEEGRSYSVS 170
KP+ AL+NP E++ ELA E ++ V+
Sbjct: 277 KPVIFALANPVPEIDPELAREAGAFIVA 304
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 143 KPLFSALSNPFDELNNELAEEGRSYSVS 170
KP+ AL+NP E++ ELA E ++ V+
Sbjct: 287 KPVIFALANPVPEIDPELAREAGAFIVA 314
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,347,385
Number of Sequences: 62578
Number of extensions: 386412
Number of successful extensions: 1316
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1220
Number of HSP's gapped (non-prelim): 26
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)