Query 047694
Match_columns 308
No_of_seqs 143 out of 780
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 00:26:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 6E-100 2E-104 762.1 30.1 299 8-306 186-522 (554)
2 3m00_A Aristolochene synthase; 100.0 8E-100 3E-104 760.6 29.4 299 8-306 181-517 (550)
3 3n0f_A Isoprene synthase; terp 100.0 4.1E-99 1E-103 756.8 28.9 297 10-306 186-520 (555)
4 2ong_A 4S-limonene synthase; m 100.0 3.3E-93 1.1E-97 715.9 29.8 295 12-306 179-512 (543)
5 3s9v_A Abietadiene synthase, c 100.0 2.6E-93 9E-98 739.0 28.0 294 11-306 409-753 (785)
6 1n1b_A (+)-bornyl diphosphate 100.0 4E-93 1.4E-97 715.5 26.3 295 12-306 185-518 (549)
7 3sdr_A Alpha-bisabolene syntha 100.0 7.5E-93 2.6E-97 738.2 29.1 295 12-306 438-785 (817)
8 2j5c_A 1,8-cineole synthase; t 100.0 5.9E-93 2E-97 716.5 25.4 294 12-306 206-537 (569)
9 3p5p_A Taxadiene synthase; cla 100.0 1.9E-92 6.6E-97 730.8 29.5 293 11-306 380-724 (764)
10 3pya_A ENT-copalyl diphosphate 100.0 1.2E-63 4.1E-68 511.9 17.4 263 12-306 384-696 (727)
11 1ps1_A Pentalenene synthase; a 100.0 1.1E-43 3.9E-48 335.6 12.8 217 62-286 12-270 (337)
12 1di1_A Aristolochene synthase; 100.0 4.8E-42 1.6E-46 319.0 15.8 206 66-286 12-264 (300)
13 3bny_A Aristolochene synthase; 100.0 2.3E-40 8E-45 310.8 15.3 212 60-286 20-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 2.5E-38 8.4E-43 305.5 15.4 206 74-285 65-311 (382)
15 3v1v_A 2-MIB synthase, 2-methy 99.9 3.9E-24 1.4E-28 209.3 16.3 138 144-286 236-390 (433)
16 1yyq_A Trichodiene synthase; t 99.0 6.2E-09 2.1E-13 99.9 14.7 162 108-285 100-276 (374)
17 3acx_A Dehydrosqualene synthas 84.2 11 0.00036 34.1 11.7 167 108-297 54-244 (293)
18 3lmd_A Geranylgeranyl pyrophos 76.0 17 0.00059 34.0 10.4 71 167-242 160-243 (360)
19 3ipi_A Geranyltranstransferase 74.0 17 0.00058 33.1 9.5 110 168-283 128-261 (295)
20 4hd1_A Squalene synthase HPNC; 72.8 53 0.0018 29.4 14.8 167 108-299 55-241 (294)
21 2ftz_A Geranyltranstransferase 69.8 51 0.0017 29.6 11.7 105 168-284 135-264 (284)
22 2h8o_A Geranyltranstransferase 64.5 55 0.0019 30.2 11.0 97 177-284 192-315 (335)
23 3m0g_A Farnesyl diphosphate sy 63.5 19 0.00065 32.7 7.5 96 177-284 147-269 (297)
24 1rtr_A Geranyltranstransferase 62.8 59 0.002 29.4 10.7 97 177-284 148-271 (301)
25 3p8l_A Geranyltranstransferase 62.2 66 0.0023 29.1 11.0 97 177-284 156-279 (302)
26 3mzv_A Decaprenyl diphosphate 60.7 1E+02 0.0035 28.3 12.9 72 167-242 139-223 (341)
27 3oyr_A Trans-isoprenyl diphosp 60.5 57 0.002 30.1 10.4 72 167-242 151-235 (345)
28 4dhd_A Polyprenyl synthetase; 59.5 85 0.0029 29.1 11.4 72 168-242 133-228 (358)
29 3pko_A Geranylgeranyl pyrophos 54.4 82 0.0028 28.9 10.3 71 168-242 144-227 (334)
30 3lsn_A Geranyltranstransferase 53.6 75 0.0026 28.8 9.7 95 178-283 153-275 (304)
31 1wy0_A Geranylgeranyl pyrophos 53.5 83 0.0028 28.8 10.2 71 168-242 138-221 (342)
32 3p8r_A Geranyltranstransferase 53.4 64 0.0022 29.2 9.2 100 177-284 158-282 (302)
33 3llw_A Geranyltranstransferase 52.5 79 0.0027 28.8 9.7 99 176-284 158-281 (311)
34 1rqj_A Geranyltranstransferase 52.4 1.3E+02 0.0045 27.0 11.2 100 177-284 152-276 (299)
35 3apz_A Geranyl diphosphate syn 51.4 53 0.0018 30.2 8.5 72 167-242 153-237 (348)
36 3nf2_A Putative polyprenyl syn 49.5 1E+02 0.0034 28.5 10.1 71 168-242 144-227 (352)
37 3ts7_A Geranyltranstransferase 47.3 84 0.0029 28.8 9.1 95 177-283 158-281 (324)
38 3pde_A Farnesyl-diphosphate sy 46.4 1.6E+02 0.0056 26.6 10.8 97 177-284 155-278 (309)
39 3uca_A Geranyltranstransferase 45.8 1.5E+02 0.005 27.1 10.5 98 177-284 180-304 (324)
40 4f62_A Geranyltranstransferase 40.6 95 0.0032 28.3 8.3 96 178-284 152-275 (317)
41 3npk_A Geranyltranstransferase 37.9 2.2E+02 0.0076 25.4 11.3 99 176-284 144-266 (291)
42 3fau_A NEDD4-binding protein 2 37.5 29 0.00098 24.9 3.4 23 260-282 6-28 (82)
43 1wmw_A Geranylgeranyl diphosph 33.3 2.7E+02 0.0093 25.1 10.6 70 168-242 131-215 (330)
44 3tc1_A Octaprenyl pyrophosphat 30.6 3E+02 0.01 24.8 10.4 70 168-242 123-203 (315)
45 2e8v_A Geranylgeranyl pyrophos 30.5 1.7E+02 0.0058 26.7 8.3 73 168-242 132-217 (340)
46 3rmg_A Octaprenyl-diphosphate 26.0 3.7E+02 0.013 24.3 14.0 72 167-242 133-217 (334)
47 2zqe_A MUTS2 protein; alpha/be 25.6 61 0.0021 23.5 3.5 22 260-281 10-31 (83)
48 2d9i_A NEDD4-binding protein 2 23.2 64 0.0022 23.7 3.2 23 260-282 14-36 (96)
49 3lom_A Geranyltranstransferase 22.8 3.4E+02 0.012 24.5 8.7 97 177-283 158-282 (313)
50 3aqb_B Component B of hexapren 22.2 2.9E+02 0.0098 24.9 8.1 72 167-242 130-214 (325)
51 1xkm_B Distinctin chain B; por 20.8 31 0.001 19.2 0.7 10 34-43 7-16 (26)
52 2q80_A Geranylgeranyl pyrophos 20.2 4.6E+02 0.016 23.3 13.0 76 167-242 111-192 (301)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=6.1e-100 Score=762.10 Aligned_cols=299 Identities=40% Similarity=0.782 Sum_probs=286.4
Q ss_pred hhhcChhHHHHHHHHhCCCCCCCcchhHHhhhhhhccCCCCCCHHHHHHHhhhhhhhhhhhHHHHHhHhHhh------cC
Q 047694 8 QNYLDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQELAYITRWV------ST 81 (308)
Q Consensus 8 ~~~~~~~l~~eV~~aL~~P~~~~~~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~h~~El~~i~rWw------~~ 81 (308)
+++++++|++||+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||++|+||| ++
T Consensus 186 ~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~ 265 (554)
T 3g4d_A 186 VASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRK 265 (554)
T ss_dssp STTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCccc
Confidence 345788899999999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred CCccchhHHHHHHHHhhhccCCCCCc---------------cchhcccCCHHHHHHHHHHHHhcchhhhccCCCchHHHH
Q 047694 82 YSYSRDRTVEMYLWSVAQYFEPHFSR---------------DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLF 146 (308)
Q Consensus 82 l~f~R~r~ve~yf~~~~~~~eP~~s~---------------DD~yD~~gt~eEl~~~t~aierWd~~~~~~lp~~mk~~f 146 (308)
|||+|||+||||||++|++|||+||. ||+||+|||+|||+.||+||+|||.+++++||+|||+||
T Consensus 266 L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f 345 (554)
T 3g4d_A 266 LPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSY 345 (554)
T ss_dssp CTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHH
Confidence 99999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhcCCCchHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------c
Q 047694 147 SALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------A 213 (308)
Q Consensus 147 ~al~~~~~ei~~~~~~~g~~~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l 213 (308)
.+|+++++||+.++.++||.++++|++++|+++++||++||+|+++||+||+||||+||.+|+|++ +
T Consensus 346 ~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~l 425 (554)
T 3g4d_A 346 KALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIV 425 (554)
T ss_dssp HHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTS
T ss_pred HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCC
Confidence 999999999999998999989999999999999999999999999999999999999999999977 8
Q ss_pred chhhhHhhhcchHHHHHHHHHHHHhhhhH----HhhcCCcchhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 047694 214 GIDAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRP 289 (308)
Q Consensus 214 ~~e~~e~~~~~p~i~~~~~~i~RL~NDi~----E~~~G~~an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~~~l~~ 289 (308)
|+++++|+.++|+++++++.|+||+|||+ |+++|+++|+|+|||+|||+|+|+|+++|++||+++||+||++++++
T Consensus 426 t~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~ 505 (554)
T 3g4d_A 426 TPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKP 505 (554)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHhhhcc
Q 047694 290 TIVPNFQCDSLMLLLTL 306 (308)
Q Consensus 290 ~~~p~~~~~~~~n~~~~ 306 (308)
+++|++|+++++|+||+
T Consensus 506 ~~~p~~~~~~~~NlaR~ 522 (554)
T 3g4d_A 506 TEMPTEVLNRSLNLARV 522 (554)
T ss_dssp CSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999999999997
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=8.2e-100 Score=760.64 Aligned_cols=299 Identities=45% Similarity=0.821 Sum_probs=291.8
Q ss_pred hhhcChhHHHHHHHHhCCCCCCCcchhHHhhhhh-hccCCCCCCHHHHHHHhhhhhhhhhhhHHHHHhHhHhh------c
Q 047694 8 QNYLDQNLAKHINDALEQPLHMGVPRIEAHKFIP-FYEHDDSKNDTLLKFAKLDFNRVQLPHQQELAYITRWV------S 80 (308)
Q Consensus 8 ~~~~~~~l~~eV~~aL~~P~~~~~~rlear~yI~-~Y~~~~~~n~~lLelAkldFn~~Q~~h~~El~~i~rWw------~ 80 (308)
+++++++|+++|+|||++|||+++||||||+||+ +|++++++|++||||||||||+||++||+||++|+||| +
T Consensus 181 ~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwk~~~l~~ 260 (550)
T 3m00_A 181 APHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 260 (550)
T ss_dssp GGGCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHH
T ss_pred HhccCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcc
Confidence 4557888999999999999999999999999999 99999999999999999999999999999999999999 6
Q ss_pred CCCccchhHHHHHHHHhhhccCCCCCc---------------cchhcccCCHHHHHHHHHHHHhcchhhhccCCCchHHH
Q 047694 81 TYSYSRDRTVEMYLWSVAQYFEPHFSR---------------DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPL 145 (308)
Q Consensus 81 ~l~f~R~r~ve~yf~~~~~~~eP~~s~---------------DD~yD~~gt~eEl~~~t~aierWd~~~~~~lp~~mk~~ 145 (308)
+|||+|||+||||||++|++|||+||. ||+||+|||+|||+.||+||+|||.+++++||+|||+|
T Consensus 261 ~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~ 340 (550)
T 3m00_A 261 TLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKIS 340 (550)
T ss_dssp HSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCGGGGGGSCHHHHHH
T ss_pred ccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhcCccccccCcHHHHHH
Confidence 899999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHhcCCCchHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc------------c
Q 047694 146 FSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI------------A 213 (308)
Q Consensus 146 f~al~~~~~ei~~~~~~~g~~~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~------------l 213 (308)
|.+|+++++||+.++.++||.++++|++++|+++++||++||+|+++||+||+||||+||.+|+|++ +
T Consensus 341 f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~~~l 420 (550)
T 3m00_A 341 YKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGMKSA 420 (550)
T ss_dssp HHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcCCCC
Confidence 9999999999999988899989999999999999999999999999999999999999999999976 7
Q ss_pred chhhhHhhhcchHHHHHHHHHHHHhhhhH----HhhcCCcchhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 047694 214 GIDAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRP 289 (308)
Q Consensus 214 ~~e~~e~~~~~p~i~~~~~~i~RL~NDi~----E~~~G~~an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~~~l~~ 289 (308)
|+++++|+.++|+++++++.|+||+|||+ |+++|+++|+|+|||+|||+|+|+|+++|++||+++||+||++++++
T Consensus 421 t~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~ 500 (550)
T 3m00_A 421 TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP 500 (550)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred cHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999 99999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHhhhcc
Q 047694 290 TIVPNFQCDSLMLLLTL 306 (308)
Q Consensus 290 ~~~p~~~~~~~~n~~~~ 306 (308)
+++|++|+++++|+||+
T Consensus 501 ~~~p~~~~~~~~NlaR~ 517 (550)
T 3m00_A 501 TPVSTEFLTPILNLARI 517 (550)
T ss_dssp CSSCGGGTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999999999997
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=4.1e-99 Score=756.84 Aligned_cols=297 Identities=34% Similarity=0.569 Sum_probs=289.5
Q ss_pred hcChhHHHHHHHHhCCCCCCCcchhHHhhhhhhccCCCCCCHHHHHHHhhhhhhhhhhhHHHHHhHhHhh------cCCC
Q 047694 10 YLDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQELAYITRWV------STYS 83 (308)
Q Consensus 10 ~~~~~l~~eV~~aL~~P~~~~~~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~h~~El~~i~rWw------~~l~ 83 (308)
.++++|++||++||++|||+++||||||+||++|++++++|++||||||||||+||++||+||++|+||| ++||
T Consensus 186 ~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~~l~ 265 (555)
T 3n0f_A 186 KIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLH 265 (555)
T ss_dssp HHCHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCT
T ss_pred cCCchHHHHHHHHhcCCcccCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHcCCcccCC
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999 7899
Q ss_pred ccchhHHHHHHHHhhhccCCCCCc---------------cchhcccCCHHHHHHHHHHHHhcchhhhccCCCchHHHHHH
Q 047694 84 YSRDRTVEMYLWSVAQYFEPHFSR---------------DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSA 148 (308)
Q Consensus 84 f~R~r~ve~yf~~~~~~~eP~~s~---------------DD~yD~~gt~eEl~~~t~aierWd~~~~~~lp~~mk~~f~a 148 (308)
|+|||+||||||++|++|||+||. ||+||+|||+|||+.||+||+|||.+++++||+|||+||.+
T Consensus 266 faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~a 345 (555)
T 3n0f_A 266 FARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLA 345 (555)
T ss_dssp TCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHH
Confidence 999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHhcCCCchHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------cch
Q 047694 149 LSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------AGI 215 (308)
Q Consensus 149 l~~~~~ei~~~~~~~g~~~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l~~ 215 (308)
|+++++||+.++.++||.++++|++++|+++++||++||+|+.+||+||+||||+||.+|+|++ +|+
T Consensus 346 L~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~ 425 (555)
T 3n0f_A 346 LYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKK 425 (555)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCCCH
Confidence 9999999999887766668899999999999999999999999999999999999999999977 899
Q ss_pred hhhHhhhcchHHHHHHHHHHHHhhhhH----HhhcCCcchhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 047694 216 DAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTI 291 (308)
Q Consensus 216 e~~e~~~~~p~i~~~~~~i~RL~NDi~----E~~~G~~an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~~~l~~~~ 291 (308)
++++|+.++|++++++++|+||+|||+ |+++|+++|+|+|||+|+|+|+|+|+++|++||+++||+||++++++++
T Consensus 426 e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~ 505 (555)
T 3n0f_A 426 EEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKEKLGGSL 505 (555)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999889
Q ss_pred CCHHHHHHHHhhhcc
Q 047694 292 VPNFQCDSLMLLLTL 306 (308)
Q Consensus 292 ~p~~~~~~~~n~~~~ 306 (308)
+|++|+++++|+||+
T Consensus 506 ~p~~~~~~~~n~aR~ 520 (555)
T 3n0f_A 506 FAKPFVETAINLARQ 520 (555)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999997
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=3.3e-93 Score=715.89 Aligned_cols=295 Identities=32% Similarity=0.505 Sum_probs=288.6
Q ss_pred ChhHHHHHHHHhCCCCCCCcchhHHhhhhhhccCCCCCCHHHHHHHhhhhhhhhhhhHHHHHhHhHhh------cCCCcc
Q 047694 12 DQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQELAYITRWV------STYSYS 85 (308)
Q Consensus 12 ~~~l~~eV~~aL~~P~~~~~~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~h~~El~~i~rWw------~~l~f~ 85 (308)
+++|++||+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||++|+||| ++|||+
T Consensus 179 ~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~kl~fa 258 (543)
T 2ong_A 179 DGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFA 258 (543)
T ss_dssp SSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSCSS
T ss_pred CCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCcccccHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999 679999
Q ss_pred chhHHHHHHHHhhhccCCCCCc---------------cchhcccCCHHHHHHHHHHHHhcchhhhccCCCchHHHHHHHH
Q 047694 86 RDRTVEMYLWSVAQYFEPHFSR---------------DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALS 150 (308)
Q Consensus 86 R~r~ve~yf~~~~~~~eP~~s~---------------DD~yD~~gt~eEl~~~t~aierWd~~~~~~lp~~mk~~f~al~ 150 (308)
|||+||||||++|++|||+||. ||+||+|||++|++.||+||+|||.++++.||+|||+||.+|+
T Consensus 259 RdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~ 338 (543)
T 2ong_A 259 RDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALN 338 (543)
T ss_dssp CCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCSSTTTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCCchhHHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCchHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------cchhh
Q 047694 151 NPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------AGIDA 217 (308)
Q Consensus 151 ~~~~ei~~~~~~~g~~~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l~~e~ 217 (308)
++++||+.++.+.||.++.+|++++|++++++|++||+|+.+||+||+||||+||.+|+|++ +|+++
T Consensus 339 ~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~ 418 (543)
T 2ong_A 339 NFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKET 418 (543)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHH
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHH
Confidence 99999999988876678999999999999999999999999999999999999999999977 89999
Q ss_pred hHhhhcchHHHHHHHHHHHHhhhhH----HhhcCCcchhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhh-cCCCCC
Q 047694 218 YEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEEC-MRPTIV 292 (308)
Q Consensus 218 ~e~~~~~p~i~~~~~~i~RL~NDi~----E~~~G~~an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~~~-l~~~~~ 292 (308)
++|+.++|++++++++|+||+|||+ |+++|+++|+|+|||+|+|+|+|+|+++++++|+++||+||+++ ++++++
T Consensus 419 ~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e~~l~~~~v 498 (543)
T 2ong_A 419 VDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNAERVSKDSPF 498 (543)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSSCSS
T ss_pred HHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999 998889
Q ss_pred CHHHHHHHHhhhcc
Q 047694 293 PNFQCDSLMLLLTL 306 (308)
Q Consensus 293 p~~~~~~~~n~~~~ 306 (308)
|++|+++++|+||+
T Consensus 499 p~~~~~~~~n~aR~ 512 (543)
T 2ong_A 499 GKDFIGCAVDLGRM 512 (543)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHe
Confidence 99999999999996
No 5
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=2.6e-93 Score=739.00 Aligned_cols=294 Identities=31% Similarity=0.568 Sum_probs=284.2
Q ss_pred cChhHHHHHHHHhCCCCCCCcchhHHhhhhhhccCCCC------------CCHHHHHHHhhhhhhhhhhhHHHHHhHhHh
Q 047694 11 LDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDS------------KNDTLLKFAKLDFNRVQLPHQQELAYITRW 78 (308)
Q Consensus 11 ~~~~l~~eV~~aL~~P~~~~~~rlear~yI~~Y~~~~~------------~n~~lLelAkldFn~~Q~~h~~El~~i~rW 78 (308)
++++|++||+|||++|||+++||||||+||++|++++. +|++||||||||||+||++||+||++|+||
T Consensus 409 ~~~~L~~eV~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrW 488 (785)
T 3s9v_A 409 FKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRW 488 (785)
T ss_dssp SSSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHhCCccccCchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 56789999999999999999999999999999998875 499999999999999999999999999999
Q ss_pred h-----cCCCccchhHHHHHHHHhhhccCCCCCc---------------cchhcccCCHHHHHHHHHHHHhcchhhhccC
Q 047694 79 V-----STYSYSRDRTVEMYLWSVAQYFEPHFSR---------------DDAYDAYGTLGELRSFTDAVERWDINCISEL 138 (308)
Q Consensus 79 w-----~~l~f~R~r~ve~yf~~~~~~~eP~~s~---------------DD~yD~~gt~eEl~~~t~aierWd~~~~~~l 138 (308)
| .+|||+|||+||||||++|++||||||. ||+||+|||+|||+.||+||+|||.+++++|
T Consensus 489 wk~~~l~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~L 568 (785)
T 3s9v_A 489 WKSSGFTDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQM 568 (785)
T ss_dssp HHHTTTTSCSSSCCCHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGS
T ss_pred HHHcCCCcCccHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcC
Confidence 9 7899999999999999999999999998 9999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhHHHHHHHHHHh-cCCCchHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-----
Q 047694 139 PEYMKPLFSALSNPFDELNNELAE-EGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI----- 212 (308)
Q Consensus 139 p~~mk~~f~al~~~~~ei~~~~~~-~g~~~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~----- 212 (308)
|+|||+||.+|+++++||+.++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||.+|+|++
T Consensus 569 peymk~~f~aL~~~~nei~~~~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~ 647 (785)
T 3s9v_A 569 PQQMKICFVGFYNTFNDIAKEGRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLI 647 (785)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHH
Confidence 999999999999999999988877 676 7899999999999999999999999999999999999999999976
Q ss_pred --------cchhhhHhhhcchHHHHHHHHHHHHhhhhH----HhhcCCcchhHHHhhhcC-CCCHHHHHHHHHHHHHHHH
Q 047694 213 --------AGIDAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEY-GTSGEETAEEFKKMIADGW 279 (308)
Q Consensus 213 --------l~~e~~e~~~~~p~i~~~~~~i~RL~NDi~----E~~~G~~an~V~cyMke~-g~s~EeA~~~i~~lie~~w 279 (308)
+|+++++|+..+|+++++++.|+||+|||+ |+++|+++|+|+|||||| |+|+|+|+++++++|+++|
T Consensus 648 ~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~w 727 (785)
T 3s9v_A 648 SALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENAL 727 (785)
T ss_dssp HTTCSSSCCCHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHhcccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 799999997666999999999999999999 999999999999999999 8999999999999999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHhhhcc
Q 047694 280 KDINEECMRPTIVPNFQCDSLMLLLTL 306 (308)
Q Consensus 280 k~ln~~~l~~~~~p~~~~~~~~n~~~~ 306 (308)
|+||+++++++ +|++|+++++|+||+
T Consensus 728 Keln~e~l~~~-~p~~~~~~~~n~aR~ 753 (785)
T 3s9v_A 728 EELNREFVNNK-IPDIYKRLVFETARI 753 (785)
T ss_dssp HHHHHHHHHSC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 99999999977 999999999999997
No 6
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=4e-93 Score=715.52 Aligned_cols=295 Identities=33% Similarity=0.553 Sum_probs=283.4
Q ss_pred ChhHHHHHHHHhCCCCCCCcchhHHhhhhhhccCCCCCCHHHHHHHhhhhhhhhhhhHHHHHhHhHhh------cCCCcc
Q 047694 12 DQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQELAYITRWV------STYSYS 85 (308)
Q Consensus 12 ~~~l~~eV~~aL~~P~~~~~~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~h~~El~~i~rWw------~~l~f~ 85 (308)
+++|++||+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||++|+||| ++|||+
T Consensus 185 ~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwke~~l~~kl~fa 264 (549)
T 1n1b_A 185 DENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFV 264 (549)
T ss_dssp CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTS
T ss_pred CCcHHHHHHHHhcCchhcCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCcccccHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999 679999
Q ss_pred chhHHHHHHHHhhhccCCCCCc---------------cchhcccCCHHHHHHHHHHHHhcchhhhccCCCchHHHHHHHH
Q 047694 86 RDRTVEMYLWSVAQYFEPHFSR---------------DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALS 150 (308)
Q Consensus 86 R~r~ve~yf~~~~~~~eP~~s~---------------DD~yD~~gt~eEl~~~t~aierWd~~~~~~lp~~mk~~f~al~ 150 (308)
|||+||||||++|++|||+||. ||+||+|||++|++.||+||+|||.++++.||+|||+||.+|+
T Consensus 265 RdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~ 344 (549)
T 1n1b_A 265 RDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVH 344 (549)
T ss_dssp CCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCccHHHHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCchHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------cchhh
Q 047694 151 NPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------AGIDA 217 (308)
Q Consensus 151 ~~~~ei~~~~~~~g~~~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l~~e~ 217 (308)
++++||+.++.+.||.++.+|++++|+++++||++||+|+.+||+||+||||++|.+|+|++ +|+++
T Consensus 345 d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~ 424 (549)
T 1n1b_A 345 NYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTA 424 (549)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHH
Confidence 99999999987776678999999999999999999999999999999999999999999977 89999
Q ss_pred -hHhhhcchHHHHHHHHHHHHhhhhH----HhhcCCcchhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 047694 218 -YEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIV 292 (308)
Q Consensus 218 -~e~~~~~p~i~~~~~~i~RL~NDi~----E~~~G~~an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~~~l~~~~~ 292 (308)
++|+.++|++++++++++||+|||+ |+++|+++|+|+|||+|||+|+|+|++++++||+++||+||+++++++++
T Consensus 425 ~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~v 504 (549)
T 1n1b_A 425 VIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPF 504 (549)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCSS
T ss_pred HHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999998899
Q ss_pred CHHHHHHHHhhhcc
Q 047694 293 PNFQCDSLMLLLTL 306 (308)
Q Consensus 293 p~~~~~~~~n~~~~ 306 (308)
|++|+++++|+||+
T Consensus 505 p~~~~~~~~n~~R~ 518 (549)
T 1n1b_A 505 PDGMVAGAANIGRV 518 (549)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHe
Confidence 99999999999996
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=7.5e-93 Score=738.16 Aligned_cols=295 Identities=32% Similarity=0.563 Sum_probs=277.2
Q ss_pred ChhHHHHHHHHhCCCCCCCcchhHHhhhhhhccCCCC------------CCHHHHHHHhhhhhhhhhhhHHHHHhHhHhh
Q 047694 12 DQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDS------------KNDTLLKFAKLDFNRVQLPHQQELAYITRWV 79 (308)
Q Consensus 12 ~~~l~~eV~~aL~~P~~~~~~rlear~yI~~Y~~~~~------------~n~~lLelAkldFn~~Q~~h~~El~~i~rWw 79 (308)
+++|++||+|||++|||+++||||||+||++|++++. +|++||||||||||+||++||+||++|+|||
T Consensus 438 ~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWw 517 (817)
T 3sdr_A 438 KQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWF 517 (817)
T ss_dssp HTTHHHHHHHHHHCCSTTCCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCchhccChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeH
Confidence 3679999999999999999999999999999999875 5999999999999999999999999999999
Q ss_pred -----cCCCccchhHHHHHHHHhhhccCCCCCc---------------cchhcccCCHHHHHHHHHHHHhcchhhhccCC
Q 047694 80 -----STYSYSRDRTVEMYLWSVAQYFEPHFSR---------------DDAYDAYGTLGELRSFTDAVERWDINCISELP 139 (308)
Q Consensus 80 -----~~l~f~R~r~ve~yf~~~~~~~eP~~s~---------------DD~yD~~gt~eEl~~~t~aierWd~~~~~~lp 139 (308)
.+|||+|||+||||||++|++||||||. ||+||+|||+|||+.||+||+|||.+++++||
T Consensus 518 k~~~l~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LP 597 (817)
T 3sdr_A 518 RDSGLPLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLP 597 (817)
T ss_dssp HHSSGGGCTTSCCCHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSC
T ss_pred HhcCCCcCccHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCc
Confidence 8899999999999999999999999998 99999999999999999999999999999999
Q ss_pred CchHHHHHHHHhHHHHHHHHHHhcCCCchHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------
Q 047694 140 EYMKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI------- 212 (308)
Q Consensus 140 ~~mk~~f~al~~~~~ei~~~~~~~g~~~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~------- 212 (308)
+|||+||.+|+++++||+.++.+++|.++.+|++++|++++++|++||+|+++||+||+||||+||.+|+|++
T Consensus 598 eymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~ 677 (817)
T 3sdr_A 598 DYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGV 677 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHH
Confidence 9999999999999999998887754558899999999999999999999999999999999999999999973
Q ss_pred -------cchhhhHhhh--cchHHHHHHHHHHHHhhhhH----HhhcCCcchhHHHhhhcC-CCCHHHHHHHHHHHHHHH
Q 047694 213 -------AGIDAYEWLR--SQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEY-GTSGEETAEEFKKMIADG 278 (308)
Q Consensus 213 -------l~~e~~e~~~--~~p~i~~~~~~i~RL~NDi~----E~~~G~~an~V~cyMke~-g~s~EeA~~~i~~lie~~ 278 (308)
+|+++++|+. ++|+++++++.|+||+|||+ |+++|+++|+|+|||||| |+|+|+|+++|+++|+++
T Consensus 678 ~~~~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~ 757 (817)
T 3sdr_A 678 LIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPA 757 (817)
T ss_dssp TTCTTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHhcccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 7999999975 45699999999999999999 999999999999999999 799999999999999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHhhhcc
Q 047694 279 WKDINEECMRPTIVPNFQCDSLMLLLTL 306 (308)
Q Consensus 279 wk~ln~~~l~~~~~p~~~~~~~~n~~~~ 306 (308)
||+||++|++++++|++|+++++|+||+
T Consensus 758 wKeln~e~l~~~~~p~~~~~~~ln~aR~ 785 (817)
T 3sdr_A 758 VKELTREFLKPDDVPFACKKMLFEETRV 785 (817)
T ss_dssp HHHHHHHHHSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 9999999999888999999999999996
No 8
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=5.9e-93 Score=716.49 Aligned_cols=294 Identities=35% Similarity=0.557 Sum_probs=273.0
Q ss_pred ChhHHHHHHHHhCCCCCCCcchhHHhhhhhhccCCCCCCHHHHHHHhhhhhhhhhhhHHHHHhHhHhh------cCCCcc
Q 047694 12 DQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQELAYITRWV------STYSYS 85 (308)
Q Consensus 12 ~~~l~~eV~~aL~~P~~~~~~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~h~~El~~i~rWw------~~l~f~ 85 (308)
+++|++||++||++|||+++||||||+||++|++++++|++||||||||||+||++||+||++|+||| ++|||+
T Consensus 206 ~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwke~~L~~kl~fa 285 (569)
T 2j5c_A 206 DINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFV 285 (569)
T ss_dssp CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC--
T ss_pred CCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCccccchH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999 679999
Q ss_pred chhHHHHHHHHhhhccCCCCCc---------------cchhcccCCHHHHHHHHHHHHhcchhhhccCCCchHHHHHHHH
Q 047694 86 RDRTVEMYLWSVAQYFEPHFSR---------------DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALS 150 (308)
Q Consensus 86 R~r~ve~yf~~~~~~~eP~~s~---------------DD~yD~~gt~eEl~~~t~aierWd~~~~~~lp~~mk~~f~al~ 150 (308)
|||+||||||++|++|||+||. ||+||+|||++|++.||+||+|||.++++.||+|||+||.+|+
T Consensus 286 RdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~ 365 (569)
T 2j5c_A 286 RDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALF 365 (569)
T ss_dssp CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCccccccCCchhHHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCchHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------cchhh
Q 047694 151 NPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------AGIDA 217 (308)
Q Consensus 151 ~~~~ei~~~~~~~g~~~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l~~e~ 217 (308)
++++||+.++.+.||.++.+|++++|++++++|++||+|+.+||+||+||||+||.+|+|++ +|+++
T Consensus 366 ~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~ 445 (569)
T 2j5c_A 366 NFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEA 445 (569)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHH
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHH
Confidence 99999999988876678999999999999999999999999999999999999999999987 89999
Q ss_pred hHhhhcchHHHHHHHHHHHHhhhhH----HhhcCCcchhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 047694 218 YEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVP 293 (308)
Q Consensus 218 ~e~~~~~p~i~~~~~~i~RL~NDi~----E~~~G~~an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~~~l~~~~~p 293 (308)
++|+.++|++++++++|+||+|||+ |+++|+++|+|+|||+|+|+|+|+|+++++++|+++||+||++|++ +++|
T Consensus 446 ~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~-~~vp 524 (569)
T 2j5c_A 446 AESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEMMT-SSFS 524 (569)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHH-CCSC
T ss_pred HHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhc-cCCC
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999999999 8899
Q ss_pred HHHHHHHHhhhcc
Q 047694 294 NFQCDSLMLLLTL 306 (308)
Q Consensus 294 ~~~~~~~~n~~~~ 306 (308)
++|+++++|+||+
T Consensus 525 ~~~~~~~~nlaR~ 537 (569)
T 2j5c_A 525 KYFVEVSANLARM 537 (569)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhe
Confidence 9999999999996
No 9
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=1.9e-92 Score=730.80 Aligned_cols=293 Identities=31% Similarity=0.518 Sum_probs=282.9
Q ss_pred cChhHHHHHHHHhCCCCCCCcchhHHhhhhhhccCCCC------------CCHHHHHHHhhhhhhhhhhhHHHHHhHhHh
Q 047694 11 LDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDS------------KNDTLLKFAKLDFNRVQLPHQQELAYITRW 78 (308)
Q Consensus 11 ~~~~l~~eV~~aL~~P~~~~~~rlear~yI~~Y~~~~~------------~n~~lLelAkldFn~~Q~~h~~El~~i~rW 78 (308)
++++|++||+|||++|||+++||||||+||++|++++. +|++||||||||||+||++||+||++|+||
T Consensus 380 ~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rW 459 (764)
T 3p5p_A 380 TNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRW 459 (764)
T ss_dssp SSSHHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHhcCchhccchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhcee
Confidence 67889999999999999999999999999999999876 599999999999999999999999999999
Q ss_pred h-----cCCCccchhHHHHHHHHhhhccCCCCCc---------------cchhcccCCHHHHHHHHHHHHhcchhhhccC
Q 047694 79 V-----STYSYSRDRTVEMYLWSVAQYFEPHFSR---------------DDAYDAYGTLGELRSFTDAVERWDINCISEL 138 (308)
Q Consensus 79 w-----~~l~f~R~r~ve~yf~~~~~~~eP~~s~---------------DD~yD~~gt~eEl~~~t~aierWd~~~~~~l 138 (308)
| .+|||+|||+||||||++| |||+||. ||+||+|||+|||+.||+||+|||.+++++|
T Consensus 460 wk~~~l~~l~faRdr~ve~Yfw~~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~L 537 (764)
T 3p5p_A 460 WKESGMADINFTRHRVAEVYFSSAT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEI 537 (764)
T ss_dssp HHHTSTTTTTCCHHHHHHHHHHTCC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGS
T ss_pred HHhcCCCcCccHHHHHHHHHHHHHh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcC
Confidence 9 8899999999999999999 9999998 9999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhHHHHHHHHHHh-cCCCchHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-----
Q 047694 139 PEYMKPLFSALSNPFDELNNELAE-EGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI----- 212 (308)
Q Consensus 139 p~~mk~~f~al~~~~~ei~~~~~~-~g~~~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~----- 212 (308)
|+|||+||.+|+++++||+.++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||.+|+|++
T Consensus 538 Peymk~~f~aL~~~~~ei~~~~~~~~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~ 616 (764)
T 3p5p_A 538 PECMQTCFKVWFKLMEEVNNDVVKVQGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQ 616 (764)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHH
Confidence 999999999999999999988876 676 7899999999999999999999999999999999999999999985
Q ss_pred --------cchhhhHhhhcchHHHHHHHHHHHHhhhhH----HhhcCCcchhHHHhhhcC-CCCHHHHHHHHHHHHHHHH
Q 047694 213 --------AGIDAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEY-GTSGEETAEEFKKMIADGW 279 (308)
Q Consensus 213 --------l~~e~~e~~~~~p~i~~~~~~i~RL~NDi~----E~~~G~~an~V~cyMke~-g~s~EeA~~~i~~lie~~w 279 (308)
+|+++++|+..+|+++++++.|+||+|||+ |+++|+++|+|+|||||| |+|+|+|+++|+++|+++|
T Consensus 617 ~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~w 696 (764)
T 3p5p_A 617 PILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRAL 696 (764)
T ss_dssp HHHTSSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 899999997666999999999999999999 999999999999999999 7999999999999999999
Q ss_pred HHHHHhhcC-CCCCCHHHHHHHHhhhcc
Q 047694 280 KDINEECMR-PTIVPNFQCDSLMLLLTL 306 (308)
Q Consensus 280 k~ln~~~l~-~~~~p~~~~~~~~n~~~~ 306 (308)
|+||+++++ ++++|++|+++++|+||+
T Consensus 697 Keln~e~l~~~~~~p~~~~~~~~n~aR~ 724 (764)
T 3p5p_A 697 KEASFEYFKPSNDIPMGCKSFIFNLRLC 724 (764)
T ss_dssp HHHHHHHHSCCSSSCHHHHHHHHHTHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHH
Confidence 999999997 778999999999999996
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=1.2e-63 Score=511.92 Aligned_cols=263 Identities=17% Similarity=0.199 Sum_probs=218.0
Q ss_pred ChhHHHHHHHHhCCCCCCCcchhHHhhhhhhccCCCC-------------CCHHHHHHHhhhhhhhhhhhHHHHHhHhHh
Q 047694 12 DQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDS-------------KNDTLLKFAKLDFNRVQLPHQQELAYITRW 78 (308)
Q Consensus 12 ~~~l~~eV~~aL~~P~~~~~~rlear~yI~~Y~~~~~-------------~n~~lLelAkldFn~~Q~~h~~El~~i~rW 78 (308)
+++|++||+|||++|||+++||||||+||++|+++++ +|++||||||||||+||++||+||++|+||
T Consensus 384 ~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrW 463 (727)
T 3pya_A 384 MKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKW 463 (727)
T ss_dssp CSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHhhhhee
Confidence 5789999999999999999999999999999997654 699999999999999999999999999999
Q ss_pred h-----cCCCccchhHHHHHHHHhhhccCCCCCc---------------cchhcccCCHHHHHHHHHHHHhcchh-----
Q 047694 79 V-----STYSYSRDRTVEMYLWSVAQYFEPHFSR---------------DDAYDAYGTLGELRSFTDAVERWDIN----- 133 (308)
Q Consensus 79 w-----~~l~f~R~r~ve~yf~~~~~~~eP~~s~---------------DD~yD~~gt~eEl~~~t~aierWd~~----- 133 (308)
| .+|||+|||+||||||++|++||||||. ||+||+|| |||+.||+||+|||.+
T Consensus 464 wk~~~l~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~~~~~~~ 541 (727)
T 3pya_A 464 YEENRLSEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIANARRSD 541 (727)
T ss_dssp HHHTTGGGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC-------
T ss_pred HHhcCcccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhccccccccc
Confidence 9 6799999999999999999999999997 99999999 9999999999999974
Q ss_pred ----hhcc---CCCc--hHHHHHHHHhHHHHHHHHHHhcCCCchHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH-Hh
Q 047694 134 ----CISE---LPEY--MKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDER-MS 203 (308)
Q Consensus 134 ----~~~~---lp~~--mk~~f~al~~~~~ei~~~~~~~g~~~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEY-l~ 203 (308)
+++. +|+| ||+||.+|++|+|||+.++.+++|.++.+|++++|.+++++|++|++ + |. .|. +.
T Consensus 542 ~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~--~E----Aellv~ 614 (727)
T 3pya_A 542 HHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E--GE----GELMVK 614 (727)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C--CH----HHHHHH
T ss_pred ccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c--cc----eeeeee
Confidence 3333 3877 89999999999999998777643447899999999999999999998 3 22 232 23
Q ss_pred hhhhhcccccchhhhHhhhcchHHHHHHHHHHHHhhhhHHhhcCCcchhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 047694 204 NAIVTGTYIAGIDAYEWLRSQPKIMTASFTLSRLIADLAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDIN 283 (308)
Q Consensus 204 ~~~~S~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDi~E~~~G~~an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln 283 (308)
.-..++|..+++ ++.. +.|..+.++++.||||+||++-.++ |.++++.+.|+..|++|+
T Consensus 615 ~I~l~sG~~l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~-------------------E~~~~~~~~IE~~mqEL~ 673 (727)
T 3pya_A 615 MIILMKNNDLTN-FFTH-THFVRLAEIINRICLPRQYLKARRN-------------------DEKEKTIKSMEKEMGKMV 673 (727)
T ss_dssp HHHHHSSSCGGG-GGSS-HHHHHHHHHHHHHSCCCC------C-------------------HHHHHHHHHHHHHHHHHH
T ss_pred eeecCCCcchHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHH-------------------HHHHHHHHHHHHHHHHHH
Confidence 333445554777 6555 6667799999999999999982111 116689999999999999
Q ss_pred HhhcCCC--CCCHHHHHHHHhhhcc
Q 047694 284 EECMRPT--IVPNFQCDSLMLLLTL 306 (308)
Q Consensus 284 ~~~l~~~--~~p~~~~~~~~n~~~~ 306 (308)
+.|++++ .+|++| .|+++|+.
T Consensus 674 ~lVl~~~~~~ip~~~--tf~~V~ks 696 (727)
T 3pya_A 674 ELALSESDTFRDVSI--TFLDVAKA 696 (727)
T ss_dssp HHHHSCCTTTHHHHH--HHHHHHHH
T ss_pred HHHhccCCCCCCCcc--cHHHHHHH
Confidence 9999854 799999 77777764
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=1.1e-43 Score=335.62 Aligned_cols=217 Identities=14% Similarity=0.124 Sum_probs=187.6
Q ss_pred hhhhhhhHHHHHhH-hHhh-----cCCCccchhHHHHHHHHhhhccCCCCCc----------------cchhccc--CCH
Q 047694 62 NRVQLPHQQELAYI-TRWV-----STYSYSRDRTVEMYLWSVAQYFEPHFSR----------------DDAYDAY--GTL 117 (308)
Q Consensus 62 n~~Q~~h~~El~~i-~rWw-----~~l~f~R~r~ve~yf~~~~~~~eP~~s~----------------DD~yD~~--gt~ 117 (308)
..-...|.+|++.. ++|| ..+||+|+|++++|||.+|++|+|++|. ||+||.+ ||+
T Consensus 12 p~~~~p~~~e~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ 91 (337)
T 1ps1_A 12 PGRQSPDHARAEAEQLAWPRSLGLIRSDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENP 91 (337)
T ss_dssp CCCCCTTHHHHHHSTTHHHHHTTSCCSHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCH
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCH
Confidence 33456677777554 4688 2346999999999999999999999998 9999998 699
Q ss_pred HHHHHHHHHHHhcchhhhccCCCchHHHHHHHHhHHHHHHHHHHhcCCCchHHhHHHHHHHHHHHHHHHHHHHhcCCCC-
Q 047694 118 GELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMP- 196 (308)
Q Consensus 118 eEl~~~t~aierWd~~~~~~lp~~mk~~f~al~~~~~ei~~~~~~~g~~~~~~~lk~~~~~~~~a~l~EAkW~~~g~vP- 196 (308)
+|++.|++++.||+.+ .+|++++++|.++.+++++++.... ....+++++.|+.+++++++||+|+.+|++|
T Consensus 92 ee~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~ 164 (337)
T 1ps1_A 92 EDTKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGMT----PAWCARSARHWRNYFDGYVDEAESRFWNAPCD 164 (337)
T ss_dssp HHHHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999864 4799999999999999999986532 2457899999999999999999999999999
Q ss_pred CHHHHHhhhhhhcccc-------------cchhhhHhhhcchHHHHHHHHHHHHhhhhH----HhhcCCcchhHHHhhhc
Q 047694 197 PFDERMSNAIVTGTYI-------------AGIDAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKE 259 (308)
Q Consensus 197 s~eEYl~~~~~S~g~~-------------l~~e~~e~~~~~p~i~~~~~~i~RL~NDi~----E~~~G~~an~V~cyMke 259 (308)
|++|||++|.+|+|+. +|+++++. +.++++.++++.++||+|||. |+++|+++|+|.|||++
T Consensus 165 s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~ 243 (337)
T 1ps1_A 165 SAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRRE 243 (337)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHH
T ss_pred CHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHH
Confidence 9999999999999977 67666655 455589999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 047694 260 YGTSGEETAEEFKKMIADGWKDINEEC 286 (308)
Q Consensus 260 ~g~s~EeA~~~i~~lie~~wk~ln~~~ 286 (308)
+|+|+|+|++++.++|+++||++|+..
T Consensus 244 ~g~s~eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 244 HGWSKSRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=4.8e-42 Score=319.02 Aligned_cols=206 Identities=11% Similarity=0.032 Sum_probs=185.8
Q ss_pred hhhHHHHHhHhHhh------cCCCccchhHHHHHHHHhhhccCCCCCc----------------cchhcccCCHHHHHHH
Q 047694 66 LPHQQELAYITRWV------STYSYSRDRTVEMYLWSVAQYFEPHFSR----------------DDAYDAYGTLGELRSF 123 (308)
Q Consensus 66 ~~h~~El~~i~rWw------~~l~f~R~r~ve~yf~~~~~~~eP~~s~----------------DD~yD~~gt~eEl~~~ 123 (308)
.-|.+|++...+|| -++||+|+|++++|||.++++++|++|. ||+||. |+.+|++.|
T Consensus 12 ~P~~~~~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~ 90 (300)
T 1di1_A 12 HPRVKEVQDEVDGYFLENWKFPSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAY 90 (300)
T ss_dssp CTTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHH
Confidence 45788888777766 3357999999999999999999999998 999999 889999999
Q ss_pred HHHHHhcchhhhccCCCchHHHHHHHHhHHHHHHHHHHhcCCCchHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHh
Q 047694 124 TDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMS 203 (308)
Q Consensus 124 t~aierWd~~~~~~lp~~mk~~f~al~~~~~ei~~~~~~~g~~~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~ 203 (308)
++++.||+.. +.+|++|+++|.++++++++++.... .+.++.|+.++++|+ |++|+..|++||++|||+
T Consensus 91 ~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~ 159 (300)
T 1di1_A 91 NNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYLE 159 (300)
T ss_dssp HHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHH
T ss_pred HHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHH
Confidence 9999999875 46899999999999999999987662 356777999999997 899999999999999999
Q ss_pred hhhhhcccc-------------cchhhhHhhhcchHHHHHHHHHHHHhhhhH----HhhcCC--------cchhHHHhhh
Q 047694 204 NAIVTGTYI-------------AGIDAYEWLRSQPKIMTASFTLSRLIADLA----EQERGH--------VASVVESYMK 258 (308)
Q Consensus 204 ~~~~S~g~~-------------l~~e~~e~~~~~p~i~~~~~~i~RL~NDi~----E~~~G~--------~an~V~cyMk 258 (308)
+|.+|+|++ +|+++++ ..|++.++++.++||+|||. |+++|+ ++|+|.|||+
T Consensus 160 ~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~ 236 (300)
T 1di1_A 160 YREKDVGKALLSALMRFSMGLRLSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAE 236 (300)
T ss_dssp HHHTCHHHHHHHHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHHH
T ss_pred HHhhhccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHHH
Confidence 999999976 8999987 46999999999999999999 899998 7899999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 047694 259 EYGTSGEETAEEFKKMIADGWKDINEEC 286 (308)
Q Consensus 259 e~g~s~EeA~~~i~~lie~~wk~ln~~~ 286 (308)
++|+|+|+|+++++++|+++||++|+..
T Consensus 237 ~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 237 ESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999876
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=2.3e-40 Score=310.79 Aligned_cols=212 Identities=10% Similarity=0.039 Sum_probs=186.2
Q ss_pred hhhhhhhhhHHHHHhHhHhh------cCCCccchhHHHHHHHHhhhccCCCCCc----------------cchhcccCCH
Q 047694 60 DFNRVQLPHQQELAYITRWV------STYSYSRDRTVEMYLWSVAQYFEPHFSR----------------DDAYDAYGTL 117 (308)
Q Consensus 60 dFn~~Q~~h~~El~~i~rWw------~~l~f~R~r~ve~yf~~~~~~~eP~~s~----------------DD~yD~~gt~ 117 (308)
.|..-...|.+|++..++|| -..||+|+|++++|||.++++++|++|. ||+||. ||+
T Consensus 20 p~p~~~~p~~~e~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~ 98 (320)
T 3bny_A 20 TFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSF 98 (320)
T ss_dssp SCCCCCCTTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHcCCCCChHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CCh
Confidence 34455567889998877777 2227999999999999999999999998 999999 889
Q ss_pred HHHHHHHHHHHhcchhhhccCCCchHHHHHHHHhHHHHHHHHHHhcCCCchHHhHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 047694 118 GELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPP 197 (308)
Q Consensus 118 eEl~~~t~aierWd~~~~~~lp~~mk~~f~al~~~~~ei~~~~~~~g~~~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs 197 (308)
+|++.|++++.||+.. +.+|++|+++|.++++++++++... + .+.++.|+.++ ++++|++|+.+|++||
T Consensus 99 ~e~~~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps 167 (320)
T 3bny_A 99 EEGSAYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMG 167 (320)
T ss_dssp HHHHHHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCC
T ss_pred hhHHHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCC
Confidence 9999999999999975 4689999999999999999998765 2 24566677777 5999999999999999
Q ss_pred HHHHHhhhhhhcccc-------------cchhhhHhhhcchHHHHHHHHHHHHhhhhH----HhhcCC--------cchh
Q 047694 198 FDERMSNAIVTGTYI-------------AGIDAYEWLRSQPKIMTASFTLSRLIADLA----EQERGH--------VASV 252 (308)
Q Consensus 198 ~eEYl~~~~~S~g~~-------------l~~e~~e~~~~~p~i~~~~~~i~RL~NDi~----E~~~G~--------~an~ 252 (308)
++|||++|.+|+|++ +|+++++ ..|++.++++.++||+|||. |+++|+ ++|+
T Consensus 168 ~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~ 244 (320)
T 3bny_A 168 LGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQ---RVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTS 244 (320)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccch
Confidence 999999999999976 7999887 47999999999999999999 899998 7899
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 047694 253 VESYMKEYGTSGEETAEEFKKMIADGWKDINEEC 286 (308)
Q Consensus 253 V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~~~ 286 (308)
|.|||+++|+|+|+|++++.++|++.|+++|+..
T Consensus 245 V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 245 VQILAQEADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999865
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=2.5e-38 Score=305.49 Aligned_cols=206 Identities=13% Similarity=0.047 Sum_probs=183.0
Q ss_pred hHhHhhcC--C---CccchhHHHHHHHHhhhccCCCCCc----------------cchhcc--cC-CHHHHHHHHHHHHh
Q 047694 74 YITRWVST--Y---SYSRDRTVEMYLWSVAQYFEPHFSR----------------DDAYDA--YG-TLGELRSFTDAVER 129 (308)
Q Consensus 74 ~i~rWw~~--l---~f~R~r~ve~yf~~~~~~~eP~~s~----------------DD~yD~--~g-t~eEl~~~t~aier 129 (308)
.+.+||.+ + +++|+|++++|||.+++++.|+++. ||+||. +| +.++++.|++++.+
T Consensus 65 ~~~~W~~~~gl~~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~ 144 (382)
T 3kb9_A 65 TTRTWLLEKRLMPADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHT 144 (382)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHH
Confidence 36789922 2 4799999999999999999999998 999997 56 99999999999997
Q ss_pred cchhhhccCCCchHHHHHHHHhHHHHHHHHHHhcCCCchHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhc
Q 047694 130 WDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTG 209 (308)
Q Consensus 130 Wd~~~~~~lp~~mk~~f~al~~~~~ei~~~~~~~g~~~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~ 209 (308)
+-. ....+|+++++++.++.+++++++..+.+ ....++++.|++++++|++||+|+.+|++||++|||++|.+|+
T Consensus 145 ~l~-~~~~~p~~~~p~~~al~dl~~~~~~~~~~----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~ 219 (382)
T 3kb9_A 145 ALD-SPGDHLHHEDTLVAGFADSVRRLYAFLPA----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTF 219 (382)
T ss_dssp HHH-SCGGGTTCSSHHHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred Hhc-CCCCCCCCCChHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhc
Confidence 622 22236889999999999999999865433 2478999999999999999999999999999999999999999
Q ss_pred ccc-------------cchhhhHhhhcchHHHHHHHHHHHHhhhhH----HhhcCCcchhHHHhhhcCCCCHHHHHHHHH
Q 047694 210 TYI-------------AGIDAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEFK 272 (308)
Q Consensus 210 g~~-------------l~~e~~e~~~~~p~i~~~~~~i~RL~NDi~----E~~~G~~an~V~cyMke~g~s~EeA~~~i~ 272 (308)
|+. +|++++++ +.++++.++++.++||+|||. |+++|+++|+|.|||+++|+|+|+|+++++
T Consensus 220 g~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v~ 298 (382)
T 3kb9_A 220 AHWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVR 298 (382)
T ss_dssp THHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHHH
Confidence 976 67777766 567779999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 047694 273 KMIADGWKDINEE 285 (308)
Q Consensus 273 ~lie~~wk~ln~~ 285 (308)
+||+++||++|+.
T Consensus 299 ~~i~~~~k~~~~~ 311 (382)
T 3kb9_A 299 RRVEECITEFLAV 311 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999984
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=99.91 E-value=3.9e-24 Score=209.31 Aligned_cols=138 Identities=9% Similarity=0.048 Sum_probs=119.7
Q ss_pred HHHHHHHhHHHHHHHHHHhcCCCchHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-----------
Q 047694 144 PLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI----------- 212 (308)
Q Consensus 144 ~~f~al~~~~~ei~~~~~~~g~~~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~----------- 212 (308)
.+-.+++++++++...+.+ ....++++.|++++++|++||+|+.+|++||++|||+++.+|++..
T Consensus 236 p~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~sg~~p~~~l~e~~~g~ 311 (433)
T 3v1v_A 236 APRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFNNFRPCPTITDTVGGY 311 (433)
T ss_dssp HHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHSSSTTTGGGHHHHHTC
T ss_pred hHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhHHHHHHHHHHHcCC
Confidence 5688999999999866533 2478899999999999999999999999999999999999994433
Q ss_pred -cchhhhHhhhcchHHHHHHHHHHHHhhhhH----HhhcC-CcchhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 047694 213 -AGIDAYEWLRSQPKIMTASFTLSRLIADLA----EQERG-HVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEEC 286 (308)
Q Consensus 213 -l~~e~~e~~~~~p~i~~~~~~i~RL~NDi~----E~~~G-~~an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~~~ 286 (308)
++++++++ ....++.++++.++||+|||. |+++| +++|+|.|||+++|+|+|+|++++.+||+++++++.+..
T Consensus 312 ~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~g~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 312 ELPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVIAEREQLCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp CCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555 445568999999999999999 88884 788999999999999999999999999999999998654
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=98.98 E-value=6.2e-09 Score=99.87 Aligned_cols=162 Identities=12% Similarity=0.078 Sum_probs=122.4
Q ss_pred cchhcccCCHHHHHHHHHHHHhcchhhhccCCCchHHHHHHHHhHHHHHHHHHHhcCCCchHHhHHHHHHHHHHHHHHHH
Q 047694 108 DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEA 187 (308)
Q Consensus 108 DD~yD~~gt~eEl~~~t~aierWd~~~~~~lp~~mk~~f~al~~~~~ei~~~~~~~g~~~~~~~lk~~~~~~~~a~l~EA 187 (308)
||.+|..+ +++..|.+.+-+ + -|. -.++..++.+.+.++.. ..+.....++.+.|.+++.++..|+
T Consensus 100 DD~~d~~~--~~l~~~~~~ll~----G---~~~-~~Pl~~al~dl~~rl~~----~~~p~~~~rf~~s~~~~~~a~~~Ea 165 (374)
T 1yyq_A 100 DDSKDDPY--PTMVNYFDDLQA----G---REQ-AHPWWALVNEHFPNVLR----HFGPFCSLNLIRSTLDFFEGCWIEQ 165 (374)
T ss_dssp TTCCSCSH--HHHTTHHHHHHH----T---CCC-SSHHHHHHHHHHHHHHT----TSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCcH--HHHHHHHHHHhc----C---CCC-CChHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998644 677777777653 1 111 12566666666666543 3344567889999999999999998
Q ss_pred HHHhcCCCCCHHHHHhhhhhhcccc-------cchhhh-Hh--hhcchHHHHHHHHHHHHhhhhH----Hhh-cCCcchh
Q 047694 188 QWFHEGYMPPFDERMSNAIVTGTYI-------AGIDAY-EW--LRSQPKIMTASFTLSRLIADLA----EQE-RGHVASV 252 (308)
Q Consensus 188 kW~~~g~vPs~eEYl~~~~~S~g~~-------l~~e~~-e~--~~~~p~i~~~~~~i~RL~NDi~----E~~-~G~~an~ 252 (308)
. +.+..|+.++|...++.++|+. +|+..+ +. ++.+...+..+..+..++|||. |.. .|+.+|.
T Consensus 166 ~--n~~~~p~~~~Y~~~rR~~sG~~E~~~~~~~P~~~~~e~~~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~Nl 243 (374)
T 1yyq_A 166 Y--NFGGFPGSHDYPQFLRRMNGLGHCVGASLWPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISL 243 (374)
T ss_dssp T--CCCCCTTCTTHHHHHHHHHHCHHHHHHTTCCTTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCH
T ss_pred h--ccCCCCCHHHHHHHHHhhccHHHHHHHhhccccccchhhcchhHHHHHHHHHHHHHhhhhhhccchhhhccCCccch
Confidence 6 3677999999999888888876 555544 11 1223455677777899999999 776 4999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 047694 253 VESYMKEYGTSGEETAEEFKKMIADGWKDINEE 285 (308)
Q Consensus 253 V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~~ 285 (308)
|..++.++|+|.++|++++..++..+..++...
T Consensus 244 V~vl~~~~g~S~~eAl~~v~~~~~~~~~r~~~~ 276 (374)
T 1yyq_A 244 VKNYVVSDEISLHEALEKLTQDTLHSSKQMVAV 276 (374)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhehhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888663
No 17
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=84.17 E-value=11 Score=34.05 Aligned_cols=167 Identities=12% Similarity=0.080 Sum_probs=83.8
Q ss_pred cchhcccCCHHHHHHHHHHHHhcchhhhccCCC-----chHHHHHHHHhHHHHHHHHHHhcCCCchHHhHHHHHHHHHHH
Q 047694 108 DDAYDAYGTLGELRSFTDAVERWDINCISELPE-----YMKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARA 182 (308)
Q Consensus 108 DD~yD~~gt~eEl~~~t~aierWd~~~~~~lp~-----~mk~~f~al~~~~~ei~~~~~~~g~~~~~~~lk~~~~~~~~a 182 (308)
||+=|......+|+.+-+.+++ ...+-|. .-.++..+|..++.+.. . -++.+.+++.|
T Consensus 54 Ddi~D~~~~~~~L~~w~~~l~~----~~~g~~~~~~~~~~~pv~~al~~~~~~~~---------l----~~~~~~~li~g 116 (293)
T 3acx_A 54 DDSIDVYGDIQFLNQIKEDIQS----IEKYPYEYHHFQSDRRIMMALQHVAQHKN---------I----AFQSFYNLIDT 116 (293)
T ss_dssp HHGGGGTSSTHHHHHHHHHHHH----HHHCTTSCCCCSSCHHHHHHHHHHHHHSC---------C----CHHHHHHHHHH
T ss_pred hhHhccCCCHHHHHHHHHHHHH----HhCCCCcccCCCCCCHHHHHHHHHHHHhC---------C----CHHHHHHHHHH
Confidence 8998875544446555555543 1111110 12577788877665432 1 12446777777
Q ss_pred HHHHHHHHhcCCCCCHHHHHhhhhhhcccc--cchhhhHhhhcchH-------HHHHHHHHHHHhhhhH-HhhcCCcchh
Q 047694 183 YFVEAQWFHEGYMPPFDERMSNAIVTGTYI--AGIDAYEWLRSQPK-------IMTASFTLSRLIADLA-EQERGHVASV 252 (308)
Q Consensus 183 ~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~--l~~e~~e~~~~~p~-------i~~~~~~i~RL~NDi~-E~~~G~~an~ 252 (308)
+-. +......+|++|+..-..-+.|.. +.-.++-. ...+. +-.+.+++. ++-|+. ...+|-+ -.
T Consensus 117 ~~~---Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~-~~~~~~~~~A~~lG~AlQltN-ilRDv~eD~~~gR~-YL 190 (293)
T 3acx_A 117 VYK---DQHFTMFETDAELFGYCYGVAGTVGEVLTPILSD-HETHQTYDVARRLGESLQLIN-ILRDVGEDFENERI-YF 190 (293)
T ss_dssp HHH---HTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHH-HHHCHHHHHHTTCC-CS
T ss_pred HHH---HcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcE-Ee
Confidence 753 334456778877666655555433 11112211 11022 233333332 566777 4556653 11
Q ss_pred HHHhhhcCCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCCHHHH
Q 047694 253 VESYMKEYGTSGEET---------AEEFKKMIADGWKDINEECMRPTIVPNFQC 297 (308)
Q Consensus 253 V~cyMke~g~s~EeA---------~~~i~~lie~~wk~ln~~~l~~~~~p~~~~ 297 (308)
=.--|.++|+|.++- .+-+..++..+..-+.+..---..+|....
T Consensus 191 P~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~~r 244 (293)
T 3acx_A 191 SKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQ 244 (293)
T ss_dssp CHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTHH
T ss_pred CHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHH
Confidence 112345789998763 344566666776666543221234665433
No 18
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=76.00 E-value=17 Score=33.99 Aligned_cols=71 Identities=8% Similarity=0.040 Sum_probs=51.4
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------cchhhhHhhhcchHHHHHHHH
Q 047694 167 YSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------AGIDAYEWLRSQPKIMTASFT 233 (308)
Q Consensus 167 ~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l~~e~~e~~~~~p~i~~~~~~ 233 (308)
.+...+.+.+..++.|-+.+..|.... ||.++|++....-+|.. .+++..+. .-++....++
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~---l~~~g~~lG~ 234 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDA---LKNFGAAVGM 234 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 356777888899999999999987665 99999998755444432 23333322 2456777888
Q ss_pred HHHHhhhhH
Q 047694 234 LSRLIADLA 242 (308)
Q Consensus 234 i~RL~NDi~ 242 (308)
...+.||+.
T Consensus 235 aFQI~DDil 243 (360)
T 3lmd_A 235 IFQIVDDII 243 (360)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 889999998
No 19
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=73.95 E-value=17 Score=33.05 Aligned_cols=110 Identities=11% Similarity=0.009 Sum_probs=62.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------cchhhhHhhhcchHHHHHHHHH
Q 047694 168 SVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------AGIDAYEWLRSQPKIMTASFTL 234 (308)
Q Consensus 168 ~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l~~e~~e~~~~~p~i~~~~~~i 234 (308)
+...+.++...++.|-+.+..|... .||.++|++....-+|.. .+++..+. .-++....++.
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~---l~~~g~~lGla 202 (295)
T 3ipi_A 128 VIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAER---FSHFGNALGTA 202 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHHH
Confidence 4555666777888888888888654 389999988754444432 33333322 34567778888
Q ss_pred HHHhhhhH----Hh-----hcCCcchhHHHhhhcCCC--CHHHHHHHHHHHHHHHHHHHH
Q 047694 235 SRLIADLA----EQ-----ERGHVASVVESYMKEYGT--SGEETAEEFKKMIADGWKDIN 283 (308)
Q Consensus 235 ~RL~NDi~----E~-----~~G~~an~V~cyMke~g~--s~EeA~~~i~~lie~~wk~ln 283 (308)
..+.||+. .. ..|+. +...+|-.+.+- ..+.|.+.+.+.++++.+.+.
T Consensus 203 FQI~DDilD~~~~~~gkd~~~gk~-Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~ 261 (295)
T 3ipi_A 203 YQIVDDILEFLEVVEGKESKFTSE-TLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE 261 (295)
T ss_dssp HHHHHHHHHHHHHHHC-------C-CHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCccCCCcccCcc-cHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 89999998 11 12333 555555544321 156666666666777765553
No 20
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=72.82 E-value=53 Score=29.43 Aligned_cols=167 Identities=11% Similarity=0.163 Sum_probs=80.3
Q ss_pred cchhcccCC--HHHHHHHHHHHHhcchhhhccCCCchHHHHHHHHhHHHHHHHHHHhcCCCchHHhHHHHHHHHHHHHHH
Q 047694 108 DDAYDAYGT--LGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFV 185 (308)
Q Consensus 108 DD~yD~~gt--~eEl~~~t~aierWd~~~~~~lp~~mk~~f~al~~~~~ei~~~~~~~g~~~~~~~lk~~~~~~~~a~l~ 185 (308)
||+-|.... ...|+.+-+.+++ ...+-|. .+++.+|..++.+..- . ++.+.+++.|+..
T Consensus 55 Ddi~D~~~~~~~~~L~~~~~~l~~----~~~g~~~--~pv~~al~~~~~~~~l---------~----~~~~~~li~g~~~ 115 (294)
T 4hd1_A 55 DDLGDEFAGDRMAALDAYEEELRR----AFAGEAT--TPAFRALQFTIATCNL---------P----MEPFLRLIEANRR 115 (294)
T ss_dssp HHTSTTCCSCHHHHHHHHHHHHHH----HHHTCCC--SHHHHHHHHHHHHHTC---------C----SHHHHHHHHHHHH
T ss_pred HHhccCCChhHHHHHHHHHHHHHH----HhcCCCC--CHHHHHHHHHHHHcCC---------C----HHHHHHHHHHHHh
Confidence 999887432 2334444444432 1122233 3788888777765421 1 1235667777764
Q ss_pred HHHHHhcCCCCCHHHHHhhhhhhcccc--cchhhhHhhhcchHHHHHHH------HHHHHhhhhH-HhhcCCcchhHHHh
Q 047694 186 EAQWFHEGYMPPFDERMSNAIVTGTYI--AGIDAYEWLRSQPKIMTASF------TLSRLIADLA-EQERGHVASVVESY 256 (308)
Q Consensus 186 EAkW~~~g~vPs~eEYl~~~~~S~g~~--l~~e~~e~~~~~p~i~~~~~------~i~RL~NDi~-E~~~G~~an~V~cy 256 (308)
.. .....+|++|+..-...+.|.. +.-.++.. ..+.....+. -+.-++.|+. +..+|-+ -.=.-.
T Consensus 116 Dl---~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~--~~~~~~~~A~~lG~AlQltNilRDv~eD~~~gR~-YlP~~~ 189 (294)
T 4hd1_A 116 DQ---RKHTYDTWEDLRDYCRYSADPVGRLVLGIFGC--LDDERARLSDATCTALQVANHMQDIDRDLALGRI-YVPRAD 189 (294)
T ss_dssp HH---HCSBCCSHHHHHHHHHHHTHHHHHHHHHHTTC--CSHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCB-CSCHHH
T ss_pred cc---ccCCCCCHHHHHHHHHhccchHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHhchhhhccCce-eCCHHH
Confidence 43 2445678877666555554432 11111111 1122211111 1234456777 5566653 111124
Q ss_pred hhcCCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 047694 257 MKEYGTSGEET---------AEEFKKMIADGWKDINEECMRPTIVPNFQCDS 299 (308)
Q Consensus 257 Mke~g~s~EeA---------~~~i~~lie~~wk~ln~~~l~~~~~p~~~~~~ 299 (308)
|.++|+|.++- ..-+..+++.+..-+.+..--...+|..+...
T Consensus 190 l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~r~~ 241 (294)
T 4hd1_A 190 LEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPRLARQ 241 (294)
T ss_dssp HHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHHHHHH
T ss_pred HHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 56789998763 23344445444443333322124578765433
No 21
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=69.83 E-value=51 Score=29.63 Aligned_cols=105 Identities=6% Similarity=-0.085 Sum_probs=71.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------cchhhhHhhhcchHHHHHHHHH
Q 047694 168 SVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------AGIDAYEWLRSQPKIMTASFTL 234 (308)
Q Consensus 168 ~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l~~e~~e~~~~~p~i~~~~~~i 234 (308)
+...+.++...++.|-+.+..|......||.++|+.....-+|.. .+++ ..-++....++.
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~------~l~~~g~~lG~a 208 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHT------XMXLLGEXFGVA 208 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHH
Confidence 566677777899999999999987655789999998765444432 2222 123567778888
Q ss_pred HHHhhhhH-----HhhcCCc-------chhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047694 235 SRLIADLA-----EQERGHV-------ASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 284 (308)
Q Consensus 235 ~RL~NDi~-----E~~~G~~-------an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~ 284 (308)
..+.||+. +..-|+. .+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 209 FQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 209 FQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999 2223331 1222222 3688999999999999988876
No 22
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=64.48 E-value=55 Score=30.18 Aligned_cols=97 Identities=11% Similarity=0.044 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------cchhhhHhhhcchHHHHHHHHHHHHhhhhH-
Q 047694 177 KGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------AGIDAYEWLRSQPKIMTASFTLSRLIADLA- 242 (308)
Q Consensus 177 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l~~e~~e~~~~~p~i~~~~~~i~RL~NDi~- 242 (308)
..++.|-+.+..|... .+|.++|+.....-+|.. .+++..+. .-++....++...+.||+.
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~---l~~~g~~lGlAFQI~DDiLD 266 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQR---LRLFGEKIGLSFQLADDLLD 266 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888765 789999998865544432 34443332 3457778888899999998
Q ss_pred ----HhhcCCc---------chhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047694 243 ----EQERGHV---------ASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 284 (308)
Q Consensus 243 ----E~~~G~~---------an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~ 284 (308)
+..-|+. .+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 267 ~~gd~~~~GK~~g~Dl~egK~T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 267 LTADAATMGKATGKDAARGKGTLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HC-----------------CCCHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred hcCCHHHhCCCcchHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 2222221 1333332 2688999999999999877654
No 23
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=63.54 E-value=19 Score=32.74 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------cchhhhHhhhcchHHHHHHHHHHHHhhhhH-
Q 047694 177 KGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------AGIDAYEWLRSQPKIMTASFTLSRLIADLA- 242 (308)
Q Consensus 177 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l~~e~~e~~~~~p~i~~~~~~i~RL~NDi~- 242 (308)
..++.|-..+..|...+..||.++|+.....-+|.. .+++ ..-++....++...+.||+.
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~------~l~~~g~~lG~aFQI~DDilD 220 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG------PLTAYATALGLAFQIADDILD 220 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH------HHHHHHHHHHHHHHHHTTCC-
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 567788888888876677899999998754333322 2222 12346677788888999998
Q ss_pred ----HhhcCCc---------chhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047694 243 ----EQERGHV---------ASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 284 (308)
Q Consensus 243 ----E~~~G~~---------an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~ 284 (308)
+..-|+. .+...+| ..|.|.+...++++++...+..
T Consensus 221 ~~~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 221 VEGNEEAAGKRLGKDAEAHKATFVSLL------GLAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp --------------------CCHHHHH------CSSHHHHHHHHHHHHHHHHTGG
T ss_pred ccCCHHHhCCCccchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 2222221 1333332 3477888888999988877653
No 24
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=62.78 E-value=59 Score=29.37 Aligned_cols=97 Identities=8% Similarity=0.011 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------cchhhhHhhhcchHHHHHHHHHHHHhhhhH-
Q 047694 177 KGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------AGIDAYEWLRSQPKIMTASFTLSRLIADLA- 242 (308)
Q Consensus 177 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l~~e~~e~~~~~p~i~~~~~~i~RL~NDi~- 242 (308)
..++.|-+.+..|... .+|.++|+.....-+|.. .+++..+. .-++....++...+.||+.
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~aFQI~DDilD 222 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEH---LESYSYHLGMMFQIKDDLLD 222 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777543 789999998855444432 33443332 2456778888889999998
Q ss_pred ----HhhcCCc---------chhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047694 243 ----EQERGHV---------ASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 284 (308)
Q Consensus 243 ----E~~~G~~---------an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~ 284 (308)
+..-|+. .+...+| ..+.|.+.+.+.++++.+.+..
T Consensus 223 ~~~d~~~~GK~~g~Dl~~gK~T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 223 CYGDEAKLGKKVGSDLENNKSTYVSLL------GKDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHCC-------------CCHHHHH------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHhCCCcchHHHcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 2222321 1333222 2578889999999999887755
No 25
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=62.21 E-value=66 Score=29.15 Aligned_cols=97 Identities=11% Similarity=0.084 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhhh-hhhcccc------------cchhhhHhhhcchHHHHHHHHHHHHhhhhH-
Q 047694 177 KGVARAYFVEAQWFHEGYMPPFDERMSNA-IVTGTYI------------AGIDAYEWLRSQPKIMTASFTLSRLIADLA- 242 (308)
Q Consensus 177 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~-~~S~g~~------------l~~e~~e~~~~~p~i~~~~~~i~RL~NDi~- 242 (308)
..++.|-+.+..|.. ..||.++|.... ..|.++. .+++..+. .-++....++...+.||+.
T Consensus 156 ~~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~---l~~~g~~lGlaFQI~DDilD 230 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGL---LTQFAHHYGLAFQIRDDLLD 230 (302)
T ss_dssp TTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 356677676767643 478999999874 4443322 33333322 3457777888889999998
Q ss_pred ----HhhcCCc---------chhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047694 243 ----EQERGHV---------ASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 284 (308)
Q Consensus 243 ----E~~~G~~---------an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~ 284 (308)
+..-|+. .+...+| ..+.|.+.+.+.++++.+.+..
T Consensus 231 ~~~d~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 231 ATSTEADLGKKVGRDEALNKSTYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp TTC-----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHhCCChhhHHhcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 2222321 1222222 4789999999999999988875
No 26
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=60.70 E-value=1e+02 Score=28.30 Aligned_cols=72 Identities=10% Similarity=-0.081 Sum_probs=50.5
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------cchhhhHhhhcchHHHHHHHH
Q 047694 167 YSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------AGIDAYEWLRSQPKIMTASFT 233 (308)
Q Consensus 167 ~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l~~e~~e~~~~~p~i~~~~~~ 233 (308)
.+...+.+....++.|-+.+..|.. +..||.++|++....-+|.. .+++..+. .-++....++
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~ 214 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQA---LFDYGDALGI 214 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 4567777888899999998888864 34689999998755444432 33333322 3456777888
Q ss_pred HHHHhhhhH
Q 047694 234 LSRLIADLA 242 (308)
Q Consensus 234 i~RL~NDi~ 242 (308)
...+.||+.
T Consensus 215 aFQI~DD~l 223 (341)
T 3mzv_A 215 AFQIVDDLL 223 (341)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888999988
No 27
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=60.47 E-value=57 Score=30.15 Aligned_cols=72 Identities=7% Similarity=-0.100 Sum_probs=50.6
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------cchhhhHhhhcchHHHHHHHH
Q 047694 167 YSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------AGIDAYEWLRSQPKIMTASFT 233 (308)
Q Consensus 167 ~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l~~e~~e~~~~~p~i~~~~~~ 233 (308)
.+...+.++...++.|-+.+..|.. +..||.++|++....-+|.. .+++..+. .-.+....++
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~ 226 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEA---LRDYGLNLGL 226 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 4567777888889999988888854 34589999998765544433 34333322 3456778888
Q ss_pred HHHHhhhhH
Q 047694 234 LSRLIADLA 242 (308)
Q Consensus 234 i~RL~NDi~ 242 (308)
...+.||+.
T Consensus 227 aFQi~DD~l 235 (345)
T 3oyr_A 227 AFQLADDAL 235 (345)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 889999998
No 28
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=59.52 E-value=85 Score=29.07 Aligned_cols=72 Identities=8% Similarity=0.015 Sum_probs=50.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHh----------cCC-CCCHHHHHhhhhhhcccc-------------cchhhhHhhhc
Q 047694 168 SVSFTKDMMKGVARAYFVEAQWFH----------EGY-MPPFDERMSNAIVTGTYI-------------AGIDAYEWLRS 223 (308)
Q Consensus 168 ~~~~lk~~~~~~~~a~l~EAkW~~----------~g~-vPs~eEYl~~~~~S~g~~-------------l~~e~~e~~~~ 223 (308)
+...+.++...++.|-..+..|.. .+. .||.++|++....-+|.. .+++..+.
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~--- 209 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEA--- 209 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHH---
Confidence 466777888899999999999862 223 679999998755444433 33333322
Q ss_pred chHHHHHHHHHHHHhhhhH
Q 047694 224 QPKIMTASFTLSRLIADLA 242 (308)
Q Consensus 224 ~p~i~~~~~~i~RL~NDi~ 242 (308)
.-++....++...+.||+.
T Consensus 210 l~~~g~~lG~aFQI~DD~l 228 (358)
T 4dhd_A 210 AWNFGMAAGVAFQIIDDVL 228 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2456777888888999988
No 29
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=54.42 E-value=82 Score=28.89 Aligned_cols=71 Identities=10% Similarity=0.003 Sum_probs=47.3
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------cchhhhHhhhcchHHHHHHHHH
Q 047694 168 SVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------AGIDAYEWLRSQPKIMTASFTL 234 (308)
Q Consensus 168 ~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l~~e~~e~~~~~p~i~~~~~~i 234 (308)
+...+.+....++.|-+.+..|.. +..||.++|++....-+|.. .+++..+. .-++....++.
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~a 219 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDR---TRDIGIAIGCA 219 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHHH
Confidence 456667778888888887777653 35689999998654433322 33333322 23566777888
Q ss_pred HHHhhhhH
Q 047694 235 SRLIADLA 242 (308)
Q Consensus 235 ~RL~NDi~ 242 (308)
..+.||+.
T Consensus 220 FQi~DD~l 227 (334)
T 3pko_A 220 YQMLDDIL 227 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88999988
No 30
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=53.62 E-value=75 Score=28.80 Aligned_cols=95 Identities=8% Similarity=-0.066 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHhhhh-hhcccc------------c-chhhhHhhhcchHHHHHHHHHHHHhhhhH-
Q 047694 178 GVARAYFVEAQWFHEGYMPPFDERMSNAI-VTGTYI------------A-GIDAYEWLRSQPKIMTASFTLSRLIADLA- 242 (308)
Q Consensus 178 ~~~~a~l~EAkW~~~g~vPs~eEYl~~~~-~S~g~~------------l-~~e~~e~~~~~p~i~~~~~~i~RL~NDi~- 242 (308)
.++.|-..+..|... .||.++|..... .|.++. . +++..+. .-++....++...+.||+.
T Consensus 153 ~~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~---l~~~g~~lGlaFQI~DDilD 227 (304)
T 3lsn_A 153 GMVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKA---LQTYAQAIGLAFQVQDDILD 227 (304)
T ss_dssp THHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 367777777777543 589999988843 443322 2 3333322 2456777888889999998
Q ss_pred ----HhhcCCc---------chhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 047694 243 ----EQERGHV---------ASVVESYMKEYGTSGEETAEEFKKMIADGWKDIN 283 (308)
Q Consensus 243 ----E~~~G~~---------an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln 283 (308)
+..-|+. .+...+| ..+.|.+...+.++++.+.+.
T Consensus 228 ~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 275 (304)
T 3lsn_A 228 VESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALR 275 (304)
T ss_dssp HHHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 2223331 1333332 468899999999998887664
No 31
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=53.45 E-value=83 Score=28.81 Aligned_cols=71 Identities=4% Similarity=-0.081 Sum_probs=50.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------cchhhhHhhhcchHHHHHHHHH
Q 047694 168 SVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------AGIDAYEWLRSQPKIMTASFTL 234 (308)
Q Consensus 168 ~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l~~e~~e~~~~~p~i~~~~~~i 234 (308)
+...+.+....++.|-+.+..|.... ..|.++|++....-+|.. .+++..+. .-++....++.
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~a 213 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKA---LSSWGRNVGIA 213 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHHH
Confidence 46667777889999999999997643 459999998765544433 33433322 34567788888
Q ss_pred HHHhhhhH
Q 047694 235 SRLIADLA 242 (308)
Q Consensus 235 ~RL~NDi~ 242 (308)
..+.||+.
T Consensus 214 FQI~DD~l 221 (342)
T 1wy0_A 214 FQIWDDVL 221 (342)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 89999998
No 32
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=53.39 E-value=64 Score=29.22 Aligned_cols=100 Identities=10% Similarity=0.063 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhhhh-hhcccc---------cch-hhhHhhhcchHHHHHHHHHHHHhhhhH---
Q 047694 177 KGVARAYFVEAQWFHEGYMPPFDERMSNAI-VTGTYI---------AGI-DAYEWLRSQPKIMTASFTLSRLIADLA--- 242 (308)
Q Consensus 177 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~-~S~g~~---------l~~-e~~e~~~~~p~i~~~~~~i~RL~NDi~--- 242 (308)
..++.|-..+..|. +..||.++|+.... .|.++. +.. ..-+.....-++....++...+.||+.
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~ 235 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDII 235 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46677878787886 45789999998753 443322 221 000011223456778888889999998
Q ss_pred --HhhcCCc---------chhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047694 243 --EQERGHV---------ASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 284 (308)
Q Consensus 243 --E~~~G~~---------an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~ 284 (308)
+..-|+. .+...+| ..+.|.+...+.++++.+.+..
T Consensus 236 ~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 236 SDTETLGKPQGSDQELNKSTYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp TC---------------CCCHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHhCCCcchHHhcCCchHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 2222321 1333332 3688999999999999877754
No 33
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=52.54 E-value=79 Score=28.76 Aligned_cols=99 Identities=11% Similarity=0.115 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHhhhh-hhcccc------------cchhhh-HhhhcchHHHHHHHHHHHHhhhh
Q 047694 176 MKGVARAYFVEAQWFHEGYMPPFDERMSNAI-VTGTYI------------AGIDAY-EWLRSQPKIMTASFTLSRLIADL 241 (308)
Q Consensus 176 ~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~-~S~g~~------------l~~e~~-e~~~~~p~i~~~~~~i~RL~NDi 241 (308)
...++.|-..+..|. +..||.++|+.... .|.++. .+++.. +. .-++....++...+.||+
T Consensus 158 ~~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~---l~~~g~~lGlaFQI~DDi 232 (311)
T 3llw_A 158 IKGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKW---LQAFGLKMGLCFQVLDDI 232 (311)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 345677777776765 56789999998744 333222 333333 22 245777788888999999
Q ss_pred H-----HhhcCCcchhHHHhhhcCCC------CHHHHHHHHHHHHHHHHHHHHH
Q 047694 242 A-----EQERGHVASVVESYMKEYGT------SGEETAEEFKKMIADGWKDINE 284 (308)
Q Consensus 242 ~-----E~~~G~~an~V~cyMke~g~------s~EeA~~~i~~lie~~wk~ln~ 284 (308)
. +..-|+.... .+... ..+.|.+..+++++++.+.+..
T Consensus 233 LD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 233 IDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8 3334554222 23333 3588888888888888877653
No 34
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=52.35 E-value=1.3e+02 Score=26.96 Aligned_cols=100 Identities=11% Similarity=0.060 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc----------c-chhhhHhhhcchHHHHHHHHHHHHhhhhH---
Q 047694 177 KGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI----------A-GIDAYEWLRSQPKIMTASFTLSRLIADLA--- 242 (308)
Q Consensus 177 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~----------l-~~e~~e~~~~~p~i~~~~~~i~RL~NDi~--- 242 (308)
..++.|-..+..|... .+|.++|+.....-+|.. + ....-+.....-++....++...+.||+.
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~ 229 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVV 229 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567777777777543 789999998864333322 3 21111111223456777888889999998
Q ss_pred --HhhcCCc---------chhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047694 243 --EQERGHV---------ASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 284 (308)
Q Consensus 243 --E~~~G~~---------an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~ 284 (308)
+..-|+. .+...+| ..+.|.+.+.+.++++.+.+..
T Consensus 230 ~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 230 GDTATLGKRQGADQQLGKSTYPALL------GLEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp SCHHHHSSCTTHHHHHTCCCHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHhCCChhhHHHcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333431 1333222 2578899999999999988876
No 35
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=51.39 E-value=53 Score=30.22 Aligned_cols=72 Identities=11% Similarity=-0.033 Sum_probs=47.4
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------cchhhhHhhhcchHHHHHHHH
Q 047694 167 YSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------AGIDAYEWLRSQPKIMTASFT 233 (308)
Q Consensus 167 ~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l~~e~~e~~~~~p~i~~~~~~ 233 (308)
.+...+.+....++.|-+.+..|... ..||.++|++....-+|.. .+++..+. .-++....++
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~ 228 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVL---AFEYGRNLGL 228 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHH---HHHHHHHHHH
Confidence 35666777788888888877766432 3579999998744333322 23333222 2356777888
Q ss_pred HHHHhhhhH
Q 047694 234 LSRLIADLA 242 (308)
Q Consensus 234 i~RL~NDi~ 242 (308)
...+.||+.
T Consensus 229 aFQi~DD~l 237 (348)
T 3apz_A 229 AFQLIDDIL 237 (348)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 889999998
No 36
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=49.46 E-value=1e+02 Score=28.54 Aligned_cols=71 Identities=8% Similarity=-0.079 Sum_probs=50.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------cchhhhHhhhcchHHHHHHHHH
Q 047694 168 SVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------AGIDAYEWLRSQPKIMTASFTL 234 (308)
Q Consensus 168 ~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l~~e~~e~~~~~p~i~~~~~~i 234 (308)
+...+.+....++.|-+.+..|... ..||.++|+.....-+|.. .+++..+. .-.+....++.
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~a 219 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADT---LEKYGYHLGLA 219 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHHH
Confidence 4566778888999999999888654 3789999998755444433 34443322 24567778888
Q ss_pred HHHhhhhH
Q 047694 235 SRLIADLA 242 (308)
Q Consensus 235 ~RL~NDi~ 242 (308)
..+.||+.
T Consensus 220 FQi~DD~l 227 (352)
T 3nf2_A 220 FQAVDDLL 227 (352)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88999987
No 37
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=47.33 E-value=84 Score=28.80 Aligned_cols=95 Identities=9% Similarity=0.035 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhhh-hhhcccc---------c----chhhhHhhhcchHHHHHHHHHHHHhhhhH
Q 047694 177 KGVARAYFVEAQWFHEGYMPPFDERMSNA-IVTGTYI---------A----GIDAYEWLRSQPKIMTASFTLSRLIADLA 242 (308)
Q Consensus 177 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~-~~S~g~~---------l----~~e~~e~~~~~p~i~~~~~~i~RL~NDi~ 242 (308)
..++.|-..+..|... .||.++|+... ..|.++. + +++..+ ..-++....++...+.||+.
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~---~l~~~g~~lGlAFQI~DDiL 232 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFD---RLDHYAKCIGLAFQIQDDIL 232 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777543 78999999874 3333222 1 222222 23456777888889999998
Q ss_pred -----Hhhc----------CCcchhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 047694 243 -----EQER----------GHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDIN 283 (308)
Q Consensus 243 -----E~~~----------G~~an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln 283 (308)
+..- |+. +...+| ..|.|.+...+.++++...+.
T Consensus 233 D~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 233 DEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 2222 222 333332 368899888888888876553
No 38
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=46.41 E-value=1.6e+02 Score=26.64 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhhh-hhhcccc------------cchhhhHhhhcchHHHHHHHHHHHHhhhhH-
Q 047694 177 KGVARAYFVEAQWFHEGYMPPFDERMSNA-IVTGTYI------------AGIDAYEWLRSQPKIMTASFTLSRLIADLA- 242 (308)
Q Consensus 177 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~-~~S~g~~------------l~~e~~e~~~~~p~i~~~~~~i~RL~NDi~- 242 (308)
..++.|-..+..|. +..||.++|.... ..|.++. .+++..+. .-++....++...+.||+.
T Consensus 155 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~---l~~~g~~lGlaFQI~DDiLD 229 (309)
T 3pde_A 155 SGMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPA---YLQFADAFGLAFQIYDDILD 229 (309)
T ss_dssp TTHHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 34566666666764 4468999998874 3333222 33333322 3457778888889999998
Q ss_pred ----HhhcCCc-----c----hhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047694 243 ----EQERGHV-----A----SVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 284 (308)
Q Consensus 243 ----E~~~G~~-----a----n~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~ 284 (308)
+..-|+. . +...+| ..+.|.+..+++++++.+.+..
T Consensus 230 ~~gd~~~~GK~~g~Dl~egK~T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 230 VVSSPAEMGKATQKDADEAKNTYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHCC-----------CTTTSSSHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHhCCCccchhhcCCccHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 2222321 1 222222 3578888888999888877764
No 39
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=45.78 E-value=1.5e+02 Score=27.15 Aligned_cols=98 Identities=11% Similarity=0.020 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhhh-hhhcccc------------cchhhhHhhhcchHHHHHHHHHHHHhhhhH-
Q 047694 177 KGVARAYFVEAQWFHEGYMPPFDERMSNA-IVTGTYI------------AGIDAYEWLRSQPKIMTASFTLSRLIADLA- 242 (308)
Q Consensus 177 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~-~~S~g~~------------l~~e~~e~~~~~p~i~~~~~~i~RL~NDi~- 242 (308)
..++.|-..+..|... ..||.++|.... ..|.++. .+++..+. .-++....++...+.||+.
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~---l~~~g~~lGlAFQI~DDiLD 255 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKK---LEGFGYKLGLAFQIKDDILD 255 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 4567777777777543 368999999884 4443322 34333322 3457777888889999998
Q ss_pred ----HhhcCCc-----c----hhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047694 243 ----EQERGHV-----A----SVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 284 (308)
Q Consensus 243 ----E~~~G~~-----a----n~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~ 284 (308)
+..-|+. . +...+| ..+.|.+...+.++++.+.+..
T Consensus 256 ~~gd~~~~GK~~g~Dl~egK~T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 256 VVGNAKDLGKNVHKDQESNKNNYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HCCC-----------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHhCCCcchHhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 2222321 1 222222 4689999999999999988764
No 40
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=40.61 E-value=95 Score=28.35 Aligned_cols=96 Identities=11% Similarity=0.066 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHhhhh-hhcccc---------c----chhhhHhhhcchHHHHHHHHHHHHhhhhH-
Q 047694 178 GVARAYFVEAQWFHEGYMPPFDERMSNAI-VTGTYI---------A----GIDAYEWLRSQPKIMTASFTLSRLIADLA- 242 (308)
Q Consensus 178 ~~~~a~l~EAkW~~~g~vPs~eEYl~~~~-~S~g~~---------l----~~e~~e~~~~~p~i~~~~~~i~RL~NDi~- 242 (308)
.++.|-..+..|. +..||.++|..... .|.++. + +++..+ ..-++....++...+.||+.
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~---~l~~~g~~lGlAFQI~DDiLD 226 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLA---KLDAYAHAIGLAFQVQDDIID 226 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 4667777777775 44589999998753 333222 1 222222 23456778888889999998
Q ss_pred ----HhhcCCc---------chhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047694 243 ----EQERGHV---------ASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 284 (308)
Q Consensus 243 ----E~~~G~~---------an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~ 284 (308)
+..-|+. .+...+| ..|.|.+...+.++++.+.+..
T Consensus 227 ~~gd~~~~GK~~g~Dl~egK~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 227 LTSDTETLGKTQFSDAEANKATYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp TC----------------CCCCHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccCChHhhCCCcchHHhcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 2222321 1333333 3688999999999999877754
No 41
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=37.86 E-value=2.2e+02 Score=25.43 Aligned_cols=99 Identities=9% Similarity=0.067 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHhhhh-hhcccc------------cchhhhHhhhcchHHHHHHHHHHHHhhhhH
Q 047694 176 MKGVARAYFVEAQWFHEGYMPPFDERMSNAI-VTGTYI------------AGIDAYEWLRSQPKIMTASFTLSRLIADLA 242 (308)
Q Consensus 176 ~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~-~S~g~~------------l~~e~~e~~~~~p~i~~~~~~i~RL~NDi~ 242 (308)
...++.|-..+..|. +..||.++|..... .|.++. .+++..+ ..-++....++...+.||+.
T Consensus 144 ~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~---~l~~~g~~lGlaFQI~DDiL 218 (291)
T 3npk_A 144 LNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESN---QIYKLGLKLGLIFQINDDII 218 (291)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 455666766666664 35789999988743 333222 2333322 23457778888889999999
Q ss_pred -----HhhcCCcchhHHHhhhcCCC------CHHHHHHHHHHHHHHHHHHHHH
Q 047694 243 -----EQERGHVASVVESYMKEYGT------SGEETAEEFKKMIADGWKDINE 284 (308)
Q Consensus 243 -----E~~~G~~an~V~cyMke~g~------s~EeA~~~i~~lie~~wk~ln~ 284 (308)
+..-|+..- .. +... ..+.|.+...++++++.+.+..
T Consensus 219 D~~gd~~~~GK~~~-~d----~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~ 266 (291)
T 3npk_A 219 DVTTSQEQSGKPTN-ND----IHKNSFVNLLGLEQAIKTKENLLNECEQDLEK 266 (291)
T ss_dssp HHC---------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCChHHHCCccc-hh----cCcchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333444321 11 2222 3678888888888888877653
No 42
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=37.48 E-value=29 Score=24.93 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 047694 260 YGTSGEETAEEFKKMIADGWKDI 282 (308)
Q Consensus 260 ~g~s~EeA~~~i~~lie~~wk~l 282 (308)
||++.+||+..+.+.+.+++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999998754
No 43
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=33.33 E-value=2.7e+02 Score=25.11 Aligned_cols=70 Identities=9% Similarity=0.022 Sum_probs=49.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHH-HhcCCCCCHHHHHhhhhh-hccc-c------------cchhhhHhhhcchHHHHHHH
Q 047694 168 SVSFTKDMMKGVARAYFVEAQW-FHEGYMPPFDERMSNAIV-TGTY-I------------AGIDAYEWLRSQPKIMTASF 232 (308)
Q Consensus 168 ~~~~lk~~~~~~~~a~l~EAkW-~~~g~vPs~eEYl~~~~~-S~g~-~------------l~~e~~e~~~~~p~i~~~~~ 232 (308)
+...+.+....++.|-+.+..| ...+..||.++|++.... |.++ . .+++.. .-++....+
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~-----l~~~g~~lG 205 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA-----YEEGGLRLG 205 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH-----HHHHHHHHH
Confidence 5667778889999999999999 654357899999976443 2222 1 222221 345677788
Q ss_pred HHHHHhhhhH
Q 047694 233 TLSRLIADLA 242 (308)
Q Consensus 233 ~i~RL~NDi~ 242 (308)
+...+.||+.
T Consensus 206 ~aFQi~DD~l 215 (330)
T 1wmw_A 206 TAFQIVDDVL 215 (330)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHccC
Confidence 8888999988
No 44
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=30.64 E-value=3e+02 Score=24.79 Aligned_cols=70 Identities=7% Similarity=-0.117 Sum_probs=48.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc----------c-chhhhHhhhcchHHHHHHHHHHH
Q 047694 168 SVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI----------A-GIDAYEWLRSQPKIMTASFTLSR 236 (308)
Q Consensus 168 ~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~----------l-~~e~~e~~~~~p~i~~~~~~i~R 236 (308)
+...+.+....++.|-+.+..|..+ ..||.++|++....-+|.. + +.. . ...-.+....++...
T Consensus 123 ~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~-~---~~l~~~g~~lG~aFQ 197 (315)
T 3tc1_A 123 IAQALSNAVLRLSRGEIEDVFVGEC-FNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD-A---KIYADFGLNFGMAFQ 197 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC-H---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC-H---HHHHHHHHHHHHHHH
Confidence 4566777788899999999888653 4789999998654444332 1 111 1 223456777888889
Q ss_pred HhhhhH
Q 047694 237 LIADLA 242 (308)
Q Consensus 237 L~NDi~ 242 (308)
+.||+.
T Consensus 198 I~DD~l 203 (315)
T 3tc1_A 198 IIDDLL 203 (315)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999998
No 45
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=30.51 E-value=1.7e+02 Score=26.69 Aligned_cols=73 Identities=7% Similarity=0.018 Sum_probs=50.8
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHhhhhhhcccc----------c-chhhhHhhhcchHHHHHHHHH
Q 047694 168 SVSFTKDMMKGVARAYFVEAQWFHEG--YMPPFDERMSNAIVTGTYI----------A-GIDAYEWLRSQPKIMTASFTL 234 (308)
Q Consensus 168 ~~~~lk~~~~~~~~a~l~EAkW~~~g--~vPs~eEYl~~~~~S~g~~----------l-~~e~~e~~~~~p~i~~~~~~i 234 (308)
+...+.+....++.|-+.+..|.... ..||.++|+.....-+|.. + +... + ....-++....++.
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~-~~~l~~~g~~lG~a 209 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-H-GHSLVPFINLLGII 209 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC--------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-H-HHHHHHHHHHHHHH
Confidence 45667777888999999999998765 6789999998865544432 1 1110 1 12334678888899
Q ss_pred HHHhhhhH
Q 047694 235 SRLIADLA 242 (308)
Q Consensus 235 ~RL~NDi~ 242 (308)
..+.||+.
T Consensus 210 FQi~DD~l 217 (340)
T 2e8v_A 210 YQIRDDYL 217 (340)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999998
No 46
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=26.05 E-value=3.7e+02 Score=24.35 Aligned_cols=72 Identities=4% Similarity=-0.063 Sum_probs=49.5
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------cchhhhHhhhcchHHHHHHHH
Q 047694 167 YSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------AGIDAYEWLRSQPKIMTASFT 233 (308)
Q Consensus 167 ~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l~~e~~e~~~~~p~i~~~~~~ 233 (308)
.+...+.+....++.|-..+..|.. ...||.++|+.....-+|.. .+++..+. .-.+....++
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~ 208 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAF---ARLLGEYIGI 208 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 4567788888999999998888864 34589999998765444433 23333322 3456777888
Q ss_pred HHHHhhhhH
Q 047694 234 LSRLIADLA 242 (308)
Q Consensus 234 i~RL~NDi~ 242 (308)
...+.||+.
T Consensus 209 aFQi~DD~l 217 (334)
T 3rmg_A 209 CFQIKDDIF 217 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888999988
No 47
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=25.63 E-value=61 Score=23.46 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 047694 260 YGTSGEETAEEFKKMIADGWKD 281 (308)
Q Consensus 260 ~g~s~EeA~~~i~~lie~~wk~ 281 (308)
||++.+||...+.+.|+++...
T Consensus 10 hG~~~~eA~~~l~~fl~~a~~~ 31 (83)
T 2zqe_A 10 RGLTVAEALLEVDQALEEARAL 31 (83)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHC
Confidence 7999999999999999998843
No 48
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=23.15 E-value=64 Score=23.74 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 047694 260 YGTSGEETAEEFKKMIADGWKDI 282 (308)
Q Consensus 260 ~g~s~EeA~~~i~~lie~~wk~l 282 (308)
||++.+||+..+...++++....
T Consensus 14 HGl~v~eA~~~L~~~L~~~~~~~ 36 (96)
T 2d9i_A 14 HGLHVDEALEHLMRVLEKKTEEF 36 (96)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999887543
No 49
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=22.75 E-value=3.4e+02 Score=24.46 Aligned_cols=97 Identities=9% Similarity=0.023 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhhhh-hhcccc-----c--------chhhhHhhhcchHHHHHHHHHHHHhhhhH
Q 047694 177 KGVARAYFVEAQWFHEGYMPPFDERMSNAI-VTGTYI-----A--------GIDAYEWLRSQPKIMTASFTLSRLIADLA 242 (308)
Q Consensus 177 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~-~S~g~~-----l--------~~e~~e~~~~~p~i~~~~~~i~RL~NDi~ 242 (308)
..++.|-..+..|... ..||.++|..... .|.++. + +++..+ ..-++....++...+.||+.
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~---~l~~~g~~lGlaFQI~DDil 233 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKS---ALRTYGKHIGLVFQMQDDYL 233 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777533 3789999998754 333221 1 122221 12346667788889999998
Q ss_pred -----HhhcCCc---------chhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 047694 243 -----EQERGHV---------ASVVESYMKEYGTSGEETAEEFKKMIADGWKDIN 283 (308)
Q Consensus 243 -----E~~~G~~---------an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln 283 (308)
+..-|+. .+...+| ..+.|.+...+.++++.+.+.
T Consensus 234 D~~gd~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 234 DLYAPTQILGKGRSSDQANQKTTFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHCC---------------CCCHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCHHhhCCCCcchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 2222321 1333222 478899999999998886654
No 50
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=22.23 E-value=2.9e+02 Score=24.91 Aligned_cols=72 Identities=7% Similarity=-0.105 Sum_probs=50.6
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------cchhhhHhhhcchHHHHHHHH
Q 047694 167 YSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------AGIDAYEWLRSQPKIMTASFT 233 (308)
Q Consensus 167 ~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l~~e~~e~~~~~p~i~~~~~~ 233 (308)
.+...+.+....++.|-+.+..|.... .||.++|++....-+|.. .+++..+ ..-++....++
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~---~l~~~g~~lG~ 205 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRFNY-PVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTY---HIKQFGHCIGM 205 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHHH
Confidence 356677778889999999998886533 589999998865544432 3333332 23456777888
Q ss_pred HHHHhhhhH
Q 047694 234 LSRLIADLA 242 (308)
Q Consensus 234 i~RL~NDi~ 242 (308)
...+.||+.
T Consensus 206 afQi~DD~l 214 (325)
T 3aqb_B 206 SYQIIDDIL 214 (325)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888999988
No 51
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=20.78 E-value=31 Score=19.24 Aligned_cols=10 Identities=40% Similarity=0.620 Sum_probs=8.0
Q ss_pred hHHhhhhhhc
Q 047694 34 IEAHKFIPFY 43 (308)
Q Consensus 34 lear~yI~~Y 43 (308)
+|||.|+++.
T Consensus 7 iearkyleql 16 (26)
T 1xkm_B 7 IEARKYLEQL 16 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6899998864
No 52
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=20.17 E-value=4.6e+02 Score=23.28 Aligned_cols=76 Identities=8% Similarity=0.072 Sum_probs=51.5
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc--cchhhhHhh----hcchHHHHHHHHHHHHhhh
Q 047694 167 YSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI--AGIDAYEWL----RSQPKIMTASFTLSRLIAD 240 (308)
Q Consensus 167 ~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~--l~~e~~e~~----~~~p~i~~~~~~i~RL~ND 240 (308)
.+...+.+.+..++.|-+.+..|......||.++|+.....-+|.. ++-..-.-+ ...-++....++...+.||
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~~l~~~g~~lG~aFQi~DD 190 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDD 190 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHH
Confidence 3566678888999999999999987777899999998865544432 000000000 1223567777888888888
Q ss_pred hH
Q 047694 241 LA 242 (308)
Q Consensus 241 i~ 242 (308)
+.
T Consensus 191 ~l 192 (301)
T 2q80_A 191 YA 192 (301)
T ss_dssp HH
T ss_pred Hh
Confidence 87
Done!