BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047699
(140 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana
GN=At1g08370 PE=1 SV=2
Length = 367
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/107 (75%), Positives = 91/107 (85%)
Query: 1 MSQNGKLMPNLDQQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEG 60
MSQNGK++PNLDQ ST+LL+LTVLQRIDP+IEEILITAAHVTFYEFNI+LSQWSRKDVEG
Sbjct: 1 MSQNGKIIPNLDQNSTRLLNLTVLQRIDPYIEEILITAAHVTFYEFNIELSQWSRKDVEG 60
Query: 61 SLFVVKRNTQPRFQFVVMNRRNTGWFVVVSISNEEYNVPNRKYLYAN 107
SLFVVKR+TQPRFQF+VMNRRNT V + + EY V LY N
Sbjct: 61 SLFVVKRSTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQGPYLLYRN 107
>sp|Q8IZD4|DCP1B_HUMAN mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B PE=1 SV=2
Length = 617
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 19 LSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVM 78
+SL LQR DP+I I+ A+ V Y F ++W + DVEG+LFV R+ P+ F +M
Sbjct: 16 ISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGFTIM 75
Query: 79 NRRNTGWFVVVSISNEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQE 131
NR + + ++ + + LY N AR LS W FYD +E
Sbjct: 76 NRLSMENRTEPITKDLDFQLQDPFLLYRN---AR-----LSIYGIW-FYDKEE 119
>sp|Q5R413|DCP1B_PONAB mRNA-decapping enzyme 1B OS=Pongo abelii GN=DCP1B PE=2 SV=1
Length = 609
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 19 LSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVM 78
+SL LQR DP+I I+ A+ V Y F ++W + DVEG+LFV R+ P+ F +M
Sbjct: 16 ISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGFTIM 75
Query: 79 NRRNTGWFVVVSISNEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQE 131
NR + + ++ + + LY N AR LS W FYD +E
Sbjct: 76 NRLSMENRTEPITKDLDFQLQDPFLLYRN---AR-----LSIYGIW-FYDKEE 119
>sp|Q3SZL6|DCP1B_BOVIN mRNA-decapping enzyme 1B OS=Bos taurus GN=DCP1B PE=2 SV=1
Length = 581
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 19 LSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVM 78
+SL L+R DP+I I+ A+ V Y F ++W + DVEG+LFV R+ P+ F +M
Sbjct: 14 ISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYSRSASPKHGFTIM 73
Query: 79 NR 80
NR
Sbjct: 74 NR 75
>sp|Q3U564|DCP1B_MOUSE mRNA-decapping enzyme 1B OS=Mus musculus GN=Dcp1b PE=2 SV=1
Length = 578
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 19 LSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVM 78
+SL L+R DP+I I+ A+ V Y F ++W + VEG+LFV R+ P+ F +M
Sbjct: 16 ISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTGVEGTLFVYTRSASPKHGFTIM 75
Query: 79 NRRNTGWFVVVSISNEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQE 131
NR + + ++ + N LY N LS W FYD +E
Sbjct: 76 NRLSMENRTEPITKDLDFQLQNPFLLYRNGT--------LSIYGIW-FYDKEE 119
>sp|Q91YD3|DCP1A_MOUSE mRNA-decapping enzyme 1A OS=Mus musculus GN=Dcp1a PE=1 SV=1
Length = 602
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 19 LSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVM 78
+SL L++ DP+I I V Y F +QW + D+EG+LFV +R+ P F ++
Sbjct: 31 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGFTIV 90
Query: 79 NRRNTGWFVVVSISNEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQE 131
NR N V + E+ + LY N LS W FYD +
Sbjct: 91 NRLNMHNLVEPVNKDLEFQLHEPFLLYRN--------ASLSIYSIW-FYDKND 134
>sp|Q9NPI6|DCP1A_HUMAN mRNA-decapping enzyme 1A OS=Homo sapiens GN=DCP1A PE=1 SV=2
Length = 582
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 19 LSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVM 78
+SL L++ DP+I I V Y F +QW + D+EG+LFV +R+ P F ++
Sbjct: 11 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGFTIV 70
Query: 79 NRRNTGWFVVVSISNEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQE 131
NR N V + E+ + LY N LS W FYD +
Sbjct: 71 NRLNMHNLVEPVNKDLEFQLHEPFLLYRN--------ASLSIYSIW-FYDKND 114
>sp|Q9P805|DCP1_SCHPO mRNA-decapping enzyme subunit 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dcp1 PE=1 SV=1
Length = 127
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 19 LSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVM 78
++L VL+ P IE I+ A+HV Y+F++ +W + +EG+ F+VK + + R +V++
Sbjct: 11 VNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVK-DQRARVGYVIL 69
Query: 79 NR 80
NR
Sbjct: 70 NR 71
>sp|Q74Z05|DCP1_ASHGO mRNA-decapping enzyme subunit 1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DCP1
PE=3 SV=1
Length = 193
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 37/68 (54%)
Query: 17 KLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFV 76
K L+ V+ R DP I+++L H T Y++ ++W++ + +G L + R+ + + +
Sbjct: 17 KTLNFNVIGRYDPKIKQLLFHTPHATVYKWEAGENKWNKLEYQGVLAIYLRDVREQAELP 76
Query: 77 VMNRRNTG 84
V ++ +
Sbjct: 77 VPHQEASA 84
>sp|Q12517|DCP1_YEAST mRNA-decapping enzyme subunit 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DCP1 PE=1 SV=1
Length = 231
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 17 KLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRN 68
K L+ V+ R DP I+++L H + Y+++ +W++ + +G L + R+
Sbjct: 20 KALNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAIYLRD 71
>sp|A8AY51|EZRA_STRGC Septation ring formation regulator EzrA OS=Streptococcus gordonii
(strain Challis / ATCC 35105 / CH1 / DL1 / V288)
GN=ezrA PE=3 SV=1
Length = 574
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 4 NGKLMPNLDQQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFN---IDLSQWSRKDVEG 60
N L+ +L+++ KL +L V ++ LI + VTF E+N +DLS S D+E
Sbjct: 30 NETLLDSLEERKEKLYNLPVNDEVEAIKNMHLIGQSQVTFREWNQKWVDLSLNSFADIEN 89
Query: 61 SLF 63
++F
Sbjct: 90 NIF 92
>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana
GN=UBP12 PE=1 SV=2
Length = 1116
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 63 FVVKRNTQPRFQFVVMNRRNTGWFVVVSISNEEYNVPNRKYLYANNIEARVFAMLLSSVK 122
+ V++ TQ +F N R + W + E P+R YL + + + +
Sbjct: 132 YTVRKETQHQF-----NARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAVRKVLD 186
Query: 123 YWPFYDNQERGLVQL 137
YW + +E G V L
Sbjct: 187 YWSYDSKKETGFVGL 201
>sp|A3CMA0|EZRA_STRSV Septation ring formation regulator EzrA OS=Streptococcus
sanguinis (strain SK36) GN=ezrA PE=3 SV=1
Length = 574
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 4 NGKLMPNLDQQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFN---IDLSQWSRKDVEG 60
N L+ NL+++ L +L V ++ LI + V F E+N +DLS S D+E
Sbjct: 30 NEALLQNLEERKEALYNLPVNDEVEEVKNMHLIGQSQVAFREWNQKWVDLSLNSFADIEN 89
Query: 61 SLF 63
+LF
Sbjct: 90 NLF 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,264,338
Number of Sequences: 539616
Number of extensions: 1706437
Number of successful extensions: 3073
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3062
Number of HSP's gapped (non-prelim): 24
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)