Query 047699
Match_columns 140
No_of_seqs 103 out of 183
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 13:48:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06058 DCP1: Dcp1-like decap 100.0 4.8E-50 1E-54 296.8 9.4 117 13-138 1-117 (122)
2 KOG2868 Decapping enzyme compl 100.0 1.6E-40 3.5E-45 277.5 8.6 123 7-138 3-125 (335)
3 PF00568 WH1: WH1 domain; Int 97.6 0.0022 4.7E-08 46.2 11.4 90 38-137 13-105 (111)
4 cd00837 EVH1 EVH1 (Enabled, Va 97.5 0.0043 9.3E-08 44.3 11.6 89 38-137 6-98 (104)
5 smart00461 WH1 WASP homology r 96.5 0.09 1.9E-06 37.7 11.0 88 40-137 10-100 (106)
6 KOG3671 Actin regulatory prote 95.7 0.0074 1.6E-07 54.3 2.7 121 5-137 10-133 (569)
7 cd01205 WASP WASP-type EVH1 do 95.2 0.58 1.3E-05 34.0 10.8 90 37-137 8-99 (105)
8 cd00835 RanBD Ran-binding doma 94.8 0.83 1.8E-05 33.1 10.6 95 38-136 15-114 (122)
9 smart00160 RanBD Ran-binding d 93.6 2.2 4.8E-05 31.5 11.3 95 38-136 24-124 (130)
10 KOG4693 Uncharacterized conser 87.1 0.35 7.6E-06 41.4 1.7 22 41-62 105-126 (392)
11 cd01207 Ena-Vasp Enabled-VASP- 81.2 19 0.00041 26.4 9.5 87 39-136 7-100 (111)
12 PF00638 Ran_BP1: RanBP1 domai 80.9 17 0.00038 25.8 10.0 91 39-136 15-113 (122)
13 PRK10708 hypothetical protein; 73.6 6.7 0.00014 25.9 3.7 31 58-89 28-60 (62)
14 PF09951 DUF2185: Protein of u 70.2 5.8 0.00012 27.9 3.1 37 18-56 50-86 (89)
15 PF13964 Kelch_6: Kelch motif 67.6 5.1 0.00011 23.9 2.1 20 38-57 25-44 (50)
16 PF01344 Kelch_1: Kelch motif; 65.9 7.6 0.00017 22.5 2.6 21 36-56 23-43 (47)
17 PF14598 PAS_11: PAS domain; P 65.6 16 0.00035 25.8 4.7 50 31-81 55-105 (111)
18 cd01206 Homer Homer type EVH1 63.4 58 0.0013 24.0 7.5 88 39-136 9-100 (111)
19 smart00612 Kelch Kelch domain. 60.8 8.5 0.00018 21.7 2.1 20 38-57 12-31 (47)
20 PF13415 Kelch_3: Galactose ox 57.7 9.6 0.00021 22.8 2.1 18 39-56 17-34 (49)
21 PF13418 Kelch_4: Galactose ox 56.1 9.3 0.0002 22.5 1.8 18 39-56 27-44 (49)
22 PF10781 DSRB: Dextransucrase 53.1 23 0.00049 23.4 3.3 26 58-84 28-53 (62)
23 PF07646 Kelch_2: Kelch motif; 47.1 16 0.00035 21.7 1.8 22 38-59 27-48 (49)
24 PF00886 Ribosomal_S16: Riboso 45.5 15 0.00033 24.0 1.6 19 67-85 4-22 (62)
25 PRK00040 rpsP 30S ribosomal pr 41.4 28 0.00062 23.7 2.5 25 67-91 11-37 (75)
26 cd01218 PH_phafin2 Phafin2 Pl 40.6 22 0.00047 25.5 2.0 20 59-79 7-27 (104)
27 PRK14525 rpsP 30S ribosomal pr 33.7 43 0.00094 23.6 2.5 25 67-91 12-38 (88)
28 PRK14524 rpsP 30S ribosomal pr 32.8 46 0.001 23.7 2.6 25 67-91 11-37 (94)
29 TIGR00002 S16 ribosomal protei 32.7 47 0.001 22.8 2.5 25 67-91 10-36 (78)
30 COG3055 Uncharacterized protei 32.2 25 0.00054 31.0 1.3 25 40-64 112-136 (381)
31 PF13453 zf-TFIIB: Transcripti 31.8 34 0.00074 20.1 1.5 26 100-137 15-40 (41)
32 PRK14523 rpsP 30S ribosomal pr 29.2 54 0.0012 25.0 2.5 25 67-91 11-37 (137)
33 PRK14521 rpsP 30S ribosomal pr 29.1 51 0.0011 26.3 2.5 25 67-91 12-38 (186)
34 CHL00005 rps16 ribosomal prote 27.0 69 0.0015 22.3 2.6 24 67-90 11-36 (82)
35 PRK14520 rpsP 30S ribosomal pr 27.0 60 0.0013 25.2 2.5 25 67-91 12-38 (155)
36 COG0228 RpsP Ribosomal protein 26.2 65 0.0014 22.8 2.4 23 68-90 12-36 (87)
37 KOG1065 Maltase glucoamylase a 25.9 1.4E+02 0.0031 28.9 5.3 41 61-111 225-265 (805)
38 PF08755 YccV-like: Hemimethyl 25.0 95 0.0021 21.7 3.1 39 41-82 19-60 (100)
39 PF08077 Cm_res_leader: Chlora 24.6 64 0.0014 15.9 1.5 14 56-69 2-15 (17)
40 PLN02772 guanylate kinase 24.2 1.4E+02 0.003 26.6 4.5 21 41-61 51-71 (398)
41 KOG2715 Uncharacterized conser 23.2 58 0.0012 26.2 1.8 22 51-72 20-41 (210)
42 PHA03149 hypothetical protein; 21.4 53 0.0011 22.0 1.1 27 60-95 2-29 (66)
43 PF07959 Fucokinase: L-fucokin 20.2 40 0.00086 29.6 0.4 50 35-84 57-106 (414)
No 1
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=100.00 E-value=4.8e-50 Score=296.81 Aligned_cols=117 Identities=37% Similarity=0.724 Sum_probs=107.2
Q ss_pred hhhhhhccHHHHhccCcchHHHhhhCCeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCCCceEEEccC
Q 047699 13 QQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVVVSIS 92 (140)
Q Consensus 13 ~~~~~~lNL~vLqR~Dp~I~~Il~~a~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~~n~~~~l~~ 92 (140)
.+++++|||+||||+||+|++||++|+|||||+||+++++|+|+|||||||||+|+..|+|+++||||+|++||+++|++
T Consensus 1 ~~~~~~lnl~vL~r~Dp~I~~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~~p~~~~~vlNR~~~~n~~~~i~~ 80 (122)
T PF06058_consen 1 KRTRNELNLRVLQRYDPSIESILDTASHVVVYKFDHETNEWEKTDIEGTLFVYKRSSSPRYGLIVLNRRSTENFVEPITP 80 (122)
T ss_dssp HHHHHHHHHHHHHHC-TTEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEETTS-ECEEEEESSSS--EEEEE-S
T ss_pred CchHHHHhHHHHhhhCchHHHHHhhCCeEEEEeecCCCCcEeecCcEeeEEEEEeecccceEEEEecCCCCCceeeecCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEeeCCEEEEEeCccceeeccccceeEEEEeechhHHhhhhhh
Q 047699 93 NEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQERGLVQLF 138 (140)
Q Consensus 93 ~~~~e~~~~yli~r~~~~~~~~~~~~~i~GiW~f~~~~e~~~i~~~ 138 (140)
++++++++|||+||++++++ + ||| ||+++||++|++-
T Consensus 81 ~~~~e~~~~~l~~r~~~~~I-~-------GiW-f~~~~d~~ri~~~ 117 (122)
T PF06058_consen 81 DLDFELQDPYLIYRNDNQEI-Y-------GIW-FYDDEDRQRIYNL 117 (122)
T ss_dssp GGGEEEETTEEEEEETTTEE-E-------EEE-ESSHHHHHHHHHH
T ss_pred CcEEEEeCCEEEEEcCCceE-E-------EEE-EEeHHHHHHHHHH
Confidence 99999999999999888766 5 999 9999999999863
No 2
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]
Probab=100.00 E-value=1.6e-40 Score=277.54 Aligned_cols=123 Identities=33% Similarity=0.617 Sum_probs=115.2
Q ss_pred CCCCCchhhhhhccHHHHhccCcchHHHhhhCCeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCCCce
Q 047699 7 LMPNLDQQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWF 86 (140)
Q Consensus 7 ~~p~~~~~~~~~lNL~vLqR~Dp~I~~Il~~a~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~~n~ 86 (140)
.++......++++||+|||||||+|++||++|+||+||+||...++|+|++||||||||+|+..|+++|+|+||++++||
T Consensus 3 ~~~~~~~~~~~a~nla~l~r~DP~ik~Ild~ashva~Y~fd~~~~eWnKtdiEGtffvY~R~~~p~~gf~i~NR~~~~nf 82 (335)
T KOG2868|consen 3 NMADELIFRGRALNLAVLQRIDPYIKSILDVASHVALYTFDFGANEWNKTDIEGTFFVYKRDASPRHGFLIVNRLSPDNF 82 (335)
T ss_pred chhHHHHHhhhhhhHHHHhhhCHHHHHHHhhccceeEEEeccccchhhhccceeEEEEEEccCCCccceEeecCCChhhh
Confidence 44455566678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCeeeEeeCCEEEEEeCccceeeccccceeEEEEeechhHHhhhhhh
Q 047699 87 VVVSISNEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQERGLVQLF 138 (140)
Q Consensus 87 ~~~l~~~~~~e~~~~yli~r~~~~~~~~~~~~~i~GiW~f~~~~e~~~i~~~ 138 (140)
+++|+++.+++++|+||+||++.+++ + ||| |||..||++|++-
T Consensus 83 ~e~lt~d~~~~~~g~fl~~rn~s~~i-~-------glW-f~d~~~~~ri~~L 125 (335)
T KOG2868|consen 83 VEPLTKDLIFQLQGPFLLYRNESGSI-Y-------GLW-FYDKNDCQRIATL 125 (335)
T ss_pred hhhcCCCeeeeecCcceeeeccccce-e-------EEE-ecCcchHHHHHHH
Confidence 99999999999999999999988876 5 999 9999999999863
No 3
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=97.59 E-value=0.0022 Score=46.21 Aligned_cols=90 Identities=13% Similarity=0.154 Sum_probs=69.0
Q ss_pred CCeEEEEEeeCCCCC-eeecCceeeEEEEEeCCCCceEEEEEecCCCC-ceEEEccCCeeeEeeCC-EEEEEeCccceee
Q 047699 38 AAHVTFYEFNIDLSQ-WSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTG-WFVVVSISNEEYNVPNR-KYLYANNIEARVF 114 (140)
Q Consensus 38 a~~v~vY~f~~~t~~-W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~~-n~~~~l~~~~~~e~~~~-yli~r~~~~~~~~ 114 (140)
++-|-||..++.+++ |.+....|.+-+++....-.|.|.+..-.+-. =+-..|.+++.+....+ |..++.++. . +
T Consensus 13 ~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~~~~Fh~f~~~~~-~-~ 90 (111)
T PF00568_consen 13 TAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYPGFVYTKARPFFHQFEDDDC-V-Y 90 (111)
T ss_dssp EEEEEEEEEETTTSESEEESSSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESTT-EEEEESSSEEEEEETTC-E-E
T ss_pred EEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecCCCEEEeCCCcEEEEEeCCe-E-E
Confidence 467889999988787 99999999999998877666877777644322 33347889999887555 778988765 3 5
Q ss_pred ccccceeEEEEeechhHHhhhhh
Q 047699 115 AMLLSSVKYWPFYDNQERGLVQL 137 (140)
Q Consensus 115 ~~~~~i~GiW~f~~~~e~~~i~~ 137 (140)
||= |-+++|.....+
T Consensus 91 -------GLn-F~se~eA~~F~~ 105 (111)
T PF00568_consen 91 -------GLN-FASEEEADQFYK 105 (111)
T ss_dssp -------EEE-ESSHHHHHHHHH
T ss_pred -------EEe-cCCHHHHHHHHH
Confidence 999 999999987653
No 4
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=97.48 E-value=0.0043 Score=44.33 Aligned_cols=89 Identities=11% Similarity=0.173 Sum_probs=67.8
Q ss_pred CCeEEEEEeeCCCCCeeec-CceeeEEEEEeCCCCceEEEEEecCCCCceE--EEccCCeeeEeeCC-EEEEEeCcccee
Q 047699 38 AAHVTFYEFNIDLSQWSRK-DVEGSLFVVKRNTQPRFQFVVMNRRNTGWFV--VVSISNEEYNVPNR-KYLYANNIEARV 113 (140)
Q Consensus 38 a~~v~vY~f~~~t~~W~K~-~iEG~LFv~~R~~~P~~~liVLNR~s~~n~~--~~l~~~~~~e~~~~-yli~r~~~~~~~ 113 (140)
++-|.||.+|+.+++|.+. +..|.+-+++-...-.|.|.+..=.+ .-++ -.|.+++++...-+ |..++.++.-
T Consensus 6 ~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~~~~y~i~~~~~~~-~~vv~~~~l~~~~~y~~~~~~Fh~w~~~~~~-- 82 (104)
T cd00837 6 TAVAQVYTADPSTGKWVPASGGTGAVSLVKDSTRNTYRIRGVDIQD-QKVIWNQEIYKGLKYTQATPFFHQWEDDNCV-- 82 (104)
T ss_pred EEEEEEEEECCCCCceEECCCCeEEEEEEEECCCCEEEEEEEecCC-CeEEEEEEecCCcEEeecCCeEEEEEcCCcE--
Confidence 5678999999999999998 78899999998766667666655444 3333 56778888866666 6678777543
Q ss_pred eccccceeEEEEeechhHHhhhhh
Q 047699 114 FAMLLSSVKYWPFYDNQERGLVQL 137 (140)
Q Consensus 114 ~~~~~~i~GiW~f~~~~e~~~i~~ 137 (140)
+ ||= |-+++|.+...+
T Consensus 83 ~-------GL~-F~se~eA~~F~~ 98 (104)
T cd00837 83 Y-------GLN-FASEEEAAQFRK 98 (104)
T ss_pred E-------EEe-eCCHHHHHHHHH
Confidence 4 999 999999987653
No 5
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=96.47 E-value=0.09 Score=37.69 Aligned_cols=88 Identities=14% Similarity=0.188 Sum_probs=59.0
Q ss_pred eEEEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCCC--ceEEEccCCeeeEeeCC-EEEEEeCccceeecc
Q 047699 40 HVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTG--WFVVVSISNEEYNVPNR-KYLYANNIEARVFAM 116 (140)
Q Consensus 40 ~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~~--n~~~~l~~~~~~e~~~~-yli~r~~~~~~~~~~ 116 (140)
-|+|-.|+..++.|.+.+..|.+-++.-.....+-+-|.-+++.+ -+--.|.+++.+...-| |-.++.++. . +
T Consensus 10 ~avV~~y~~~~~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~~vv~e~ely~~~~y~~~~~~Fh~f~~~~~-~-~-- 85 (106)
T smart00461 10 RAVVQLYDADTKKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQDKVIWNQELYKNFKYNQATPTFHQWADDKC-V-Y-- 85 (106)
T ss_pred EEEEEEEeCCCCCeEECCCCCEEEEEEEecCCeEEEEEEEecCCCeEEEEEeccCCCEEeecCCceEEEEeCCe-E-E--
Confidence 345555566667899999988777776555555555555555542 33456677888876666 457776443 2 4
Q ss_pred ccceeEEEEeechhHHhhhhh
Q 047699 117 LLSSVKYWPFYDNQERGLVQL 137 (140)
Q Consensus 117 ~~~i~GiW~f~~~~e~~~i~~ 137 (140)
||= |-+++|.++..+
T Consensus 86 -----GLn-F~se~EA~~F~~ 100 (106)
T smart00461 86 -----GLN-FASEEEAKKFRK 100 (106)
T ss_pred -----Eee-cCCHHHHHHHHH
Confidence 999 999999987653
No 6
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.70 E-value=0.0074 Score=54.35 Aligned_cols=121 Identities=18% Similarity=0.193 Sum_probs=75.7
Q ss_pred CCCCCCCchhhhhhccHHHHhccCcchHHHhhhCCeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCc--eEEEEEecCC
Q 047699 5 GKLMPNLDQQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPR--FQFVVMNRRN 82 (140)
Q Consensus 5 ~~~~p~~~~~~~~~lNL~vLqR~Dp~I~~Il~~a~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~--~~liVLNR~s 82 (140)
.+..+++.....+.-.-..|+++-+. +-....++-|-||.=+...+.|.|++.-|.|.+|+-..+=. ++++=++-..
T Consensus 10 ~~~~~n~~S~lLt~~ene~lf~~lgk-~~~~l~aAVVqLY~a~p~~~~W~~~~~~Gal~lVkD~~~rsyFlrl~di~~~r 88 (569)
T KOG3671|consen 10 PRRPPNVPSTLLTSEENETLFKLLGK-KCKTLAAAVVQLYKAYPDPNHWNKTGLCGALCLVKDNAQRSYFLRLVDIVNNR 88 (569)
T ss_pred CCCCCCCcccccchhHHHHHHHHhcc-chhhHHHHHHHHHhhcCChhhhccccCceeEEEeeccccceeeeEEeeecCce
Confidence 44455544332222233445555565 44555567788999988878999999999999999865442 3333333222
Q ss_pred CCceEEEccCCeeeEeeCCEE-EEEeCccceeeccccceeEEEEeechhHHhhhhh
Q 047699 83 TGWFVVVSISNEEYNVPNRKY-LYANNIEARVFAMLLSSVKYWPFYDNQERGLVQL 137 (140)
Q Consensus 83 ~~n~~~~l~~~~~~e~~~~yl-i~r~~~~~~~~~~~~~i~GiW~f~~~~e~~~i~~ 137 (140)
=-|-..|...+++...-.|+ .|--+++ ..||= |.+++||+...+
T Consensus 89 -liWdqELY~nf~y~q~r~ffhtFegddc---------~aGLn-F~~E~EA~~F~k 133 (569)
T KOG3671|consen 89 -LIWDQELYQNFEYRQPRTFFHTFEGDDC---------QAGLN-FASEEEAQKFRK 133 (569)
T ss_pred -eeehHHhhhhceeccCccceeeeccccc---------eeeec-ccCHHHHHHHHH
Confidence 34555677777777755543 3432222 34999 999999987654
No 7
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=95.23 E-value=0.58 Score=34.01 Aligned_cols=90 Identities=20% Similarity=0.302 Sum_probs=65.7
Q ss_pred hCCeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCC-CceEEEccCCeeeEeeCCEE-EEEeCccceee
Q 047699 37 TAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNT-GWFVVVSISNEEYNVPNRKY-LYANNIEARVF 114 (140)
Q Consensus 37 ~a~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~-~n~~~~l~~~~~~e~~~~yl-i~r~~~~~~~~ 114 (140)
.++-|-||.=.++.++|+++ ..|.+-+++-...=.|-|=+..-++. -=|-..|..++++...-+|. .+-.++.
T Consensus 8 ~~aVvqlY~a~p~~~~W~~~-~~Gvl~~vkD~~~~sy~lrl~D~~~~~v~weqElY~~f~y~~~r~fFhtFe~d~c---- 82 (105)
T cd01205 8 ATAVVQLYKAYPDPGRWTKT-LTGAVCLVKDNVQKSYFIRLFDIKANRIIWEQELYDNFEYQQPRPFFHTFEGDDC---- 82 (105)
T ss_pred EEEEEEEEEecCCCCeeEEE-eEEEEEEEEECCCCEEEEEEEEccCCcEEEEEEcccCcEEccCCCcEEEEeccCc----
Confidence 45678899988778999999 99999999876444455555555542 35667888889988888855 4533332
Q ss_pred ccccceeEEEEeechhHHhhhhh
Q 047699 115 AMLLSSVKYWPFYDNQERGLVQL 137 (140)
Q Consensus 115 ~~~~~i~GiW~f~~~~e~~~i~~ 137 (140)
..|+= |-|++|.....+
T Consensus 83 -----~~GL~-Fade~EA~~F~k 99 (105)
T cd01205 83 -----VVGLN-FADETEAAEFRK 99 (105)
T ss_pred -----EEEEE-ECCHHHHHHHHH
Confidence 23999 999999987654
No 8
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=94.76 E-value=0.83 Score=33.10 Aligned_cols=95 Identities=11% Similarity=0.217 Sum_probs=63.6
Q ss_pred CCeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCCCceEE--EccCCeeeEeeC---CEEEEEeCccce
Q 047699 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVV--VSISNEEYNVPN---RKYLYANNIEAR 112 (140)
Q Consensus 38 a~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~~n~~~--~l~~~~~~e~~~---~yli~r~~~~~~ 112 (140)
...|-||.|+.++++|...|+ |+|-|.+....-.+++++ -|.++..+.. .|.+++.++..+ ..+.+-..+...
T Consensus 15 ~~r~KLy~~~~~~~~WkerG~-G~lki~~~k~~~~~Rivm-R~d~~~kv~lN~~i~~~~~~~~~~~~~k~~~~~~~d~~~ 92 (122)
T cd00835 15 SVRAKLYRFDDETKEWKERGV-GELKILKHKDTGKYRLLM-RRDQVLKLCLNHKLVPGMKLQPMGNSDKSIVWAAMDFSD 92 (122)
T ss_pred EEEeEEEEEcCCCCCCeeceE-EEEEEEEcCCCCcEEEEE-EeCCccEEEEeeEecCCcEEeecCCCCcEEEEEeeecCC
Confidence 456899999998999999986 899999877656677644 4444544443 467888888886 677664222110
Q ss_pred eeccccceeEEEEeechhHHhhhh
Q 047699 113 VFAMLLSSVKYWPFYDNQERGLVQ 136 (140)
Q Consensus 113 ~~~~~~~i~GiW~f~~~~e~~~i~ 136 (140)
-.+....|.|= |-++++++...
T Consensus 93 -~~~~~~~~~lr-fk~~~~a~~f~ 114 (122)
T cd00835 93 -DEPKPETFAIR-FKTEEIADEFK 114 (122)
T ss_pred -CCCcEEEEEEE-ECCHHHHHHHH
Confidence 00134556887 87888777554
No 9
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=93.59 E-value=2.2 Score=31.54 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=61.7
Q ss_pred CCeEEEEEeeCCCCCeeecCceeeEEEEEeCCC-CceEEEEEecCCCCceEE--EccCCeeeEeeC---CEEEEEeCccc
Q 047699 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQ-PRFQFVVMNRRNTGWFVV--VSISNEEYNVPN---RKYLYANNIEA 111 (140)
Q Consensus 38 a~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~-P~~~liVLNR~s~~n~~~--~l~~~~~~e~~~---~yli~r~~~~~ 111 (140)
...|-||.|+.++++|.-.|+ |+|.|.+.... -+++++ |-|.++..++. .|.+++.++... +.+++--.+..
T Consensus 24 ~~r~KL~~~~~~~~~WkerG~-G~lki~~~~~~~~~~Riv-mR~~~~~kv~lN~~i~~~~~~~~~~~~~~~~~~~~~d~~ 101 (130)
T smart00160 24 SARAKLYRFANDKKEWKERGV-GDLKILKSKDNGGKVRIV-MRRDGVLKVCANHPIFKSMTLKPLAGSNRALKWTPEDFA 101 (130)
T ss_pred EEEeEEEEEcCCCCCCeeccE-EEEEEEEcCCCCCeEEEE-EEECCCceEEeccEecCCcEEeecCCCcceEEEeeeecC
Confidence 356899999998899999998 99999888766 456664 55656655554 456777776543 34444211110
Q ss_pred eeeccccceeEEEEeechhHHhhhh
Q 047699 112 RVFAMLLSSVKYWPFYDNQERGLVQ 136 (140)
Q Consensus 112 ~~~~~~~~i~GiW~f~~~~e~~~i~ 136 (140)
. -......+++= |=++++++..+
T Consensus 102 d-~~~~~~~~~ir-fk~~e~a~~f~ 124 (130)
T smart00160 102 D-DIPKLVLYAVR-FKTKEEADSFK 124 (130)
T ss_pred C-CCCceEEEEEE-eCCHHHHHHHH
Confidence 0 01124556777 77788877654
No 10
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=87.12 E-value=0.35 Score=41.41 Aligned_cols=22 Identities=32% Similarity=0.742 Sum_probs=20.1
Q ss_pred EEEEEeeCCCCCeeecCceeeE
Q 047699 41 VTFYEFNIDLSQWSRKDVEGSL 62 (140)
Q Consensus 41 v~vY~f~~~t~~W~K~~iEG~L 62 (140)
-+||.||++++.|.|..|||++
T Consensus 105 N~Ly~fDp~t~~W~~p~v~G~v 126 (392)
T KOG4693|consen 105 NLLYEFDPETNVWKKPEVEGFV 126 (392)
T ss_pred ceeeeeccccccccccceeeec
Confidence 4799999999999999999974
No 11
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=81.24 E-value=19 Score=26.39 Aligned_cols=87 Identities=9% Similarity=0.160 Sum_probs=58.0
Q ss_pred CeEEEEEeeCCCCCeeecCce--e--eEEEEEeCCCCceEEEEEecCCCC--ceEEEccCCeeeEeeCC-EEEEEeCccc
Q 047699 39 AHVTFYEFNIDLSQWSRKDVE--G--SLFVVKRNTQPRFQFVVMNRRNTG--WFVVVSISNEEYNVPNR-KYLYANNIEA 111 (140)
Q Consensus 39 ~~v~vY~f~~~t~~W~K~~iE--G--~LFv~~R~~~P~~~liVLNR~s~~--n~~~~l~~~~~~e~~~~-yli~r~~~~~ 111 (140)
+-|.|..+|+.++.|.-.+-- | +.-+|......-|+++ --|...+ =+--.|.+++.+...-+ |.-+|.++.
T Consensus 7 ~rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~~~~yrIv-g~~~~~~~~v~e~~l~~~l~y~k~~p~Fh~w~~~~~- 84 (111)
T cd01207 7 ARASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPRNNTFRVV-GRKLQDHQVVINCAIVKGLKYNQATPTFHQWRDARQ- 84 (111)
T ss_pred EEEEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCCCCEEEEE-EeecCCCcEEEEEEecCCceeeecCCcceeeecCCe-
Confidence 467888999999999997653 5 5667776554445433 2222222 22346777888765555 667877653
Q ss_pred eeeccccceeEEEEeechhHHhhhh
Q 047699 112 RVFAMLLSSVKYWPFYDNQERGLVQ 136 (140)
Q Consensus 112 ~~~~~~~~i~GiW~f~~~~e~~~i~ 136 (140)
. + ||= |-+++|..+..
T Consensus 85 v-~-------GLn-F~Se~eA~~F~ 100 (111)
T cd01207 85 V-Y-------GLN-FGSKEDATMFA 100 (111)
T ss_pred E-E-------eec-cCCHHHHHHHH
Confidence 3 5 999 99999998754
No 12
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=80.88 E-value=17 Score=25.78 Aligned_cols=91 Identities=13% Similarity=0.293 Sum_probs=52.4
Q ss_pred CeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCCCceEE--EccCCeeeEeeC---CEEEEEe---Ccc
Q 047699 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVV--VSISNEEYNVPN---RKYLYAN---NIE 110 (140)
Q Consensus 39 ~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~~n~~~--~l~~~~~~e~~~---~yli~r~---~~~ 110 (140)
..|-||.|+.++++|...|+ |+|-|.+....-.++|++=+- +...++. .|.+++.++... .-+.+-. .++
T Consensus 15 ~r~Kl~~~~~~~~~W~erG~-G~l~i~~~k~~~~~RlvmR~d-~~~kv~lN~~i~~~m~~~~~~~~~~~~~~~~~~~~~~ 92 (122)
T PF00638_consen 15 VRAKLYRFDKEDKEWKERGV-GTLKILKHKETGKYRLVMRRD-GTGKVLLNHPIFKGMKLKPMKGSEKSLVWTAIDYADE 92 (122)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEEEETTSCEEEEEEEET-TTTEEEEEEE--TTC-EEESTTTTTEEEEEEEECTTS
T ss_pred EEEEEEEEeCCCCCccccce-eEEEEEEccCCcceEEEEEEc-ccCceeEEEEecCCceecccccCCcEEEEEeccccCC
Confidence 35899999998899988776 888888876555666655444 4444443 467788776544 2343311 111
Q ss_pred ceeeccccceeEEEEeechhHHhhhh
Q 047699 111 ARVFAMLLSSVKYWPFYDNQERGLVQ 136 (140)
Q Consensus 111 ~~~~~~~~~i~GiW~f~~~~e~~~i~ 136 (140)
+ +....|-|= |-++++++...
T Consensus 93 ~----~~~~~~~ir-f~~~e~a~~f~ 113 (122)
T PF00638_consen 93 E----GKPETYLIR-FKSAEDADEFK 113 (122)
T ss_dssp S----SEEEEEEEE--SSHHHHHHHH
T ss_pred C----CceEEEEEE-ECCHHHHHHHH
Confidence 1 122344566 66777665543
No 13
>PRK10708 hypothetical protein; Provisional
Probab=73.58 E-value=6.7 Score=25.88 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=24.5
Q ss_pred ceeeEEEEEeCCCCceEEEEEecCCCCc--eEEE
Q 047699 58 VEGSLFVVKRNTQPRFQFVVMNRRNTGW--FVVV 89 (140)
Q Consensus 58 iEG~LFv~~R~~~P~~~liVLNR~s~~n--~~~~ 89 (140)
-||+||++.....| -++-..|-.+..+ |+++
T Consensus 28 ~EG~MyLvaL~dYP-~GiWFFNE~~~~~G~FVep 60 (62)
T PRK10708 28 SEGTMYLVSLEDYP-LGIWFFNEAGHQDGIFVEK 60 (62)
T ss_pred cCcEEEEEEcCcCC-CceEEEeccCCCCceEecc
Confidence 38999999999999 7788888877554 5554
No 14
>PF09951 DUF2185: Protein of unknown function (DUF2185); InterPro: IPR018689 This domain has no known function.
Probab=70.18 E-value=5.8 Score=27.90 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=30.7
Q ss_pred hccHHHHhccCcchHHHhhhCCeEEEEEeeCCCCCeeec
Q 047699 18 LLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRK 56 (140)
Q Consensus 18 ~lNL~vLqR~Dp~I~~Il~~a~~v~vY~f~~~t~~W~K~ 56 (140)
-..|+.+-++||+|..||.. +.-+.|..+++.+ |.+.
T Consensus 50 i~~ln~i~~idp~i~~ll~~-p~Gt~~er~e~g~-~~~v 86 (89)
T PF09951_consen 50 IVDLNTILNIDPSIIPLLDA-PYGTAFERDEDGE-FYEV 86 (89)
T ss_pred EEeHHHHHhhChHHHHHhcC-CCCceEEECCCCC-EEEe
Confidence 35789999999999999984 7788899988744 9874
No 15
>PF13964 Kelch_6: Kelch motif
Probab=67.58 E-value=5.1 Score=23.93 Aligned_cols=20 Identities=5% Similarity=0.217 Sum_probs=16.5
Q ss_pred CCeEEEEEeeCCCCCeeecC
Q 047699 38 AAHVTFYEFNIDLSQWSRKD 57 (140)
Q Consensus 38 a~~v~vY~f~~~t~~W~K~~ 57 (140)
...-.++.||+++++|++..
T Consensus 25 ~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 25 KYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred CccccEEEEcCCCCcEEECC
Confidence 44567999999999999863
No 16
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=65.88 E-value=7.6 Score=22.52 Aligned_cols=21 Identities=5% Similarity=0.192 Sum_probs=17.6
Q ss_pred hhCCeEEEEEeeCCCCCeeec
Q 047699 36 ITAAHVTFYEFNIDLSQWSRK 56 (140)
Q Consensus 36 ~~a~~v~vY~f~~~t~~W~K~ 56 (140)
.......++.||..+++|++.
T Consensus 23 ~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 23 NNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp TSSBEEEEEEEETTTTEEEEE
T ss_pred cCceeeeEEEEeCCCCEEEEc
Confidence 346678999999999999974
No 17
>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A ....
Probab=65.59 E-value=16 Score=25.81 Aligned_cols=50 Identities=22% Similarity=0.407 Sum_probs=36.9
Q ss_pred hHHHhhhCCeE-EEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecC
Q 047699 31 IEEILITAAHV-TFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRR 81 (140)
Q Consensus 31 I~~Il~~a~~v-~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~ 81 (140)
.++++..-.-+ ..|.|-...++|.....++.+|.-..+..|.| ++-.|+.
T Consensus 55 ~~~~~~~g~~~~~~yR~~~k~g~~vwvqt~~~~~~n~~~~~~~~-Iv~~n~v 105 (111)
T PF14598_consen 55 HREVLQKGQSVSPYYRFRTKNGGYVWVQTKATLFYNPWTSKPEF-IVCTNTV 105 (111)
T ss_dssp HHHHHHHSSEEEEEEEEE-TTSSEEEEEEEEEEEEETTTTCEEE-EEEEEEE
T ss_pred HHHHhhCCCcCcceEEEEecCCcEEEEEEEEEEEECCCCCCccE-EEEEEEE
Confidence 44455554433 48999999999999999999999777777755 6667764
No 18
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=63.41 E-value=58 Score=24.03 Aligned_cols=88 Identities=8% Similarity=0.110 Sum_probs=56.5
Q ss_pred CeEEEEEeeCCCC-CeeecCcee-eEEEEEeCCCCceEEEEEecCCCCceE-EEccCCeeeEeeCC-EEEEEeCccceee
Q 047699 39 AHVTFYEFNIDLS-QWSRKDVEG-SLFVVKRNTQPRFQFVVMNRRNTGWFV-VVSISNEEYNVPNR-KYLYANNIEARVF 114 (140)
Q Consensus 39 ~~v~vY~f~~~t~-~W~K~~iEG-~LFv~~R~~~P~~~liVLNR~s~~n~~-~~l~~~~~~e~~~~-yli~r~~~~~~~~ 114 (140)
+-|.|..||+.++ .|.-.+-.+ ++-+|.-.....|++|= +.+.+..+ -.|++++.+....+ |==+|......
T Consensus 9 arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~--~~~~~~iINc~i~~~~~y~kas~~FhQWrD~R~~t-- 84 (111)
T cd01206 9 TRAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIIS--VGGTKAIINSTITPNMTFTKTSQKFGQWADSRANT-- 84 (111)
T ss_pred eeeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEE--ecCcEEEEeccccCCcceeecccccccccccccce--
Confidence 5677888899765 999887421 34455556677788775 33332222 24566776666555 55666655433
Q ss_pred ccccceeEEEEeechhHHhhhh
Q 047699 115 AMLLSSVKYWPFYDNQERGLVQ 136 (140)
Q Consensus 115 ~~~~~i~GiW~f~~~~e~~~i~ 136 (140)
+|||= |-+++|.++..
T Consensus 85 -----VyGLn-F~Sk~ea~~F~ 100 (111)
T cd01206 85 -----VYGLG-FSSEQQLTKFA 100 (111)
T ss_pred -----eeecc-cCCHHHHHHHH
Confidence 34999 99999988764
No 19
>smart00612 Kelch Kelch domain.
Probab=60.80 E-value=8.5 Score=21.66 Aligned_cols=20 Identities=5% Similarity=0.220 Sum_probs=16.2
Q ss_pred CCeEEEEEeeCCCCCeeecC
Q 047699 38 AAHVTFYEFNIDLSQWSRKD 57 (140)
Q Consensus 38 a~~v~vY~f~~~t~~W~K~~ 57 (140)
.+...++.||+.+++|++..
T Consensus 12 ~~~~~v~~yd~~~~~W~~~~ 31 (47)
T smart00612 12 QRLKSVEVYDPETNKWTPLP 31 (47)
T ss_pred ceeeeEEEECCCCCeEccCC
Confidence 34677899999999998754
No 20
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=57.70 E-value=9.6 Score=22.75 Aligned_cols=18 Identities=22% Similarity=0.597 Sum_probs=15.3
Q ss_pred CeEEEEEeeCCCCCeeec
Q 047699 39 AHVTFYEFNIDLSQWSRK 56 (140)
Q Consensus 39 ~~v~vY~f~~~t~~W~K~ 56 (140)
...-+|.||.++++|++.
T Consensus 17 ~~nd~~~~~~~~~~W~~~ 34 (49)
T PF13415_consen 17 RLNDVWVFDLDTNTWTRI 34 (49)
T ss_pred EecCEEEEECCCCEEEEC
Confidence 345689999999999987
No 21
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=56.08 E-value=9.3 Score=22.54 Aligned_cols=18 Identities=22% Similarity=0.619 Sum_probs=12.6
Q ss_pred CeEEEEEeeCCCCCeeec
Q 047699 39 AHVTFYEFNIDLSQWSRK 56 (140)
Q Consensus 39 ~~v~vY~f~~~t~~W~K~ 56 (140)
..--+|.||.++++|++.
T Consensus 27 ~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 27 PLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp E---EEEEETTTTEEEE-
T ss_pred ccCCEEEEECCCCEEEEC
Confidence 455689999999999987
No 22
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=53.07 E-value=23 Score=23.39 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=21.3
Q ss_pred ceeeEEEEEeCCCCceEEEEEecCCCC
Q 047699 58 VEGSLFVVKRNTQPRFQFVVMNRRNTG 84 (140)
Q Consensus 58 iEG~LFv~~R~~~P~~~liVLNR~s~~ 84 (140)
-||+||++.....| -++-..|-.+..
T Consensus 28 ~EG~MYLvaL~dYP-~GiWFFNE~~~~ 53 (62)
T PF10781_consen 28 NEGTMYLVALEDYP-AGIWFFNEKDSP 53 (62)
T ss_pred cCcEEEEEEcCcCC-cceEEEecCCCC
Confidence 38999999999999 777778876643
No 23
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=47.06 E-value=16 Score=21.72 Aligned_cols=22 Identities=14% Similarity=0.401 Sum_probs=17.0
Q ss_pred CCeEEEEEeeCCCCCeeecCce
Q 047699 38 AAHVTFYEFNIDLSQWSRKDVE 59 (140)
Q Consensus 38 a~~v~vY~f~~~t~~W~K~~iE 59 (140)
...-.++.||.++++|++...-
T Consensus 27 ~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 27 SSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred cccceeEEEECCCCEEeecCCC
Confidence 4455688999999999987643
No 24
>PF00886 Ribosomal_S16: Ribosomal protein S16; InterPro: IPR000307 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups: Eubacterial S16. Algal and plant chloroplast S16. Cyanelle S16. Neurospora crassa mitochondrial S24 (cyt-21). S16 proteins have about 100 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2Y14_P 3UZ6_S 2J02_P 1HNZ_P 3V26_P 3KNL_P 1N34_P 2J00_P 1HNW_P 3OHC_P ....
Probab=45.53 E-value=15 Score=24.00 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=15.8
Q ss_pred eCCCCceEEEEEecCCCCc
Q 047699 67 RNTQPRFQFVVMNRRNTGW 85 (140)
Q Consensus 67 R~~~P~~~liVLNR~s~~n 85 (140)
+...|.|.++|+|.+++-|
T Consensus 4 ~k~~P~YrIVv~d~r~~Rd 22 (62)
T PF00886_consen 4 RKKRPFYRIVVADSRSPRD 22 (62)
T ss_dssp STTEEEEEEEEEETTSSTT
T ss_pred CCCCCeEEEEEEeCCcccc
Confidence 4568999999999999743
No 25
>PRK00040 rpsP 30S ribosomal protein S16; Reviewed
Probab=41.44 E-value=28 Score=23.71 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=19.3
Q ss_pred eCCCCceEEEEEecCCCC--ceEEEcc
Q 047699 67 RNTQPRFQFVVMNRRNTG--WFVVVSI 91 (140)
Q Consensus 67 R~~~P~~~liVLNR~s~~--n~~~~l~ 91 (140)
+...|.|.++|+|.+++- -|+|.|-
T Consensus 11 ~k~~P~YrIVv~d~r~~RdGk~iE~lG 37 (75)
T PRK00040 11 AKKRPFYRIVVADSRSPRDGRFIERVG 37 (75)
T ss_pred CCCCCeEEEEEEecCCCCCCCceeEEe
Confidence 456999999999999975 3666553
No 26
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=40.63 E-value=22 Score=25.46 Aligned_cols=20 Identities=30% Similarity=0.610 Sum_probs=14.4
Q ss_pred eeeEE-EEEeCCCCceEEEEEe
Q 047699 59 EGSLF-VVKRNTQPRFQFVVMN 79 (140)
Q Consensus 59 EG~LF-v~~R~~~P~~~liVLN 79 (140)
||.|- +|.+..+||+ ||++|
T Consensus 7 eG~L~K~~rk~~~~R~-ffLFn 27 (104)
T cd01218 7 EGVLTKMCRKKPKQRQ-FFLFN 27 (104)
T ss_pred cCcEEEeecCCCceEE-EEEec
Confidence 78877 6777778875 66655
No 27
>PRK14525 rpsP 30S ribosomal protein S16; Provisional
Probab=33.65 E-value=43 Score=23.58 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=19.9
Q ss_pred eCCCCceEEEEEecCCCC--ceEEEcc
Q 047699 67 RNTQPRFQFVVMNRRNTG--WFVVVSI 91 (140)
Q Consensus 67 R~~~P~~~liVLNR~s~~--n~~~~l~ 91 (140)
+...|.|.++|.|.++.. -|+|.|-
T Consensus 12 ~k~~P~YrIVv~dsr~~RdGk~IE~lG 38 (88)
T PRK14525 12 THKAPFYHVVATDSRNARDGKYLEDVG 38 (88)
T ss_pred CCCCCeEEEEEeecCCCCCCCceeEEe
Confidence 457999999999999974 5666654
No 28
>PRK14524 rpsP 30S ribosomal protein S16; Provisional
Probab=32.82 E-value=46 Score=23.71 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=19.6
Q ss_pred eCCCCceEEEEEecCCCCc--eEEEcc
Q 047699 67 RNTQPRFQFVVMNRRNTGW--FVVVSI 91 (140)
Q Consensus 67 R~~~P~~~liVLNR~s~~n--~~~~l~ 91 (140)
+...|.|.++|.|.+++.| ++|.|-
T Consensus 11 ~KkrPfYrIVvadsr~~RdGk~iE~lG 37 (94)
T PRK14524 11 KRKQPFYRIVVVDSRKRRDGAYIESLG 37 (94)
T ss_pred CCCCCeEEEEEEecCCCCCCCceeEee
Confidence 4568999999999999764 666553
No 29
>TIGR00002 S16 ribosomal protein S16. This model describes ribosomal S16 of bacteria and organelles.
Probab=32.72 E-value=47 Score=22.78 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=19.1
Q ss_pred eCCCCceEEEEEecCCCCc--eEEEcc
Q 047699 67 RNTQPRFQFVVMNRRNTGW--FVVVSI 91 (140)
Q Consensus 67 R~~~P~~~liVLNR~s~~n--~~~~l~ 91 (140)
+...|.|.++|++.+++-| ++|.|-
T Consensus 10 ~k~~PfYrIVv~d~r~~RdGk~iE~lG 36 (78)
T TIGR00002 10 RKKRPFYRIVVADSRSRRDGRYIEELG 36 (78)
T ss_pred CCCCCeEEEEEEecCCCCCCCceeEee
Confidence 3568999999999999753 555553
No 30
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.24 E-value=25 Score=30.97 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=19.5
Q ss_pred eEEEEEeeCCCCCeeecCceeeEEE
Q 047699 40 HVTFYEFNIDLSQWSRKDVEGSLFV 64 (140)
Q Consensus 40 ~v~vY~f~~~t~~W~K~~iEG~LFv 64 (140)
+-.+|.||+.+++|+|.+..-|.=+
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~sP~gl 136 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTRSPTGL 136 (381)
T ss_pred eeeeEEecCCCChhheecccccccc
Confidence 3468999999999999887655433
No 31
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=31.77 E-value=34 Score=20.07 Aligned_cols=26 Identities=15% Similarity=0.026 Sum_probs=17.1
Q ss_pred CCEEEEEeCccceeeccccceeEEEEeechhHHhhhhh
Q 047699 100 NRKYLYANNIEARVFAMLLSSVKYWPFYDNQERGLVQL 137 (140)
Q Consensus 100 ~~yli~r~~~~~~~~~~~~~i~GiW~f~~~~e~~~i~~ 137 (140)
+++-+.+-.+- . |+| | |..|.+++.+
T Consensus 15 ~~~~id~C~~C---~-------G~W-~-d~~el~~~~e 40 (41)
T PF13453_consen 15 GDVEIDVCPSC---G-------GIW-F-DAGELEKLLE 40 (41)
T ss_pred CCEEEEECCCC---C-------eEE-c-cHHHHHHHHh
Confidence 45556655543 2 999 5 8888887753
No 32
>PRK14523 rpsP 30S ribosomal protein S16; Provisional
Probab=29.20 E-value=54 Score=25.04 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=19.3
Q ss_pred eCCCCceEEEEEecCCCC--ceEEEcc
Q 047699 67 RNTQPRFQFVVMNRRNTG--WFVVVSI 91 (140)
Q Consensus 67 R~~~P~~~liVLNR~s~~--n~~~~l~ 91 (140)
+...|.|+++|++.+++- -|+|.|-
T Consensus 11 rKkrPfYRIVVaDsRs~RDGK~IE~LG 37 (137)
T PRK14523 11 SKKNPFYHIVVADRRKPRDGRFIERVG 37 (137)
T ss_pred CCCCCeEEEEEEecCCCCCCCceeeee
Confidence 456999999999999975 4666553
No 33
>PRK14521 rpsP 30S ribosomal protein S16; Provisional
Probab=29.13 E-value=51 Score=26.34 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=19.7
Q ss_pred eCCCCceEEEEEecCCCC--ceEEEcc
Q 047699 67 RNTQPRFQFVVMNRRNTG--WFVVVSI 91 (140)
Q Consensus 67 R~~~P~~~liVLNR~s~~--n~~~~l~ 91 (140)
+...|.|+|+|.|.+++. -|++.|-
T Consensus 12 ~KkrPfYrIVVaDsR~~RDGk~IE~lG 38 (186)
T PRK14521 12 RKGKAFYWIVAADSRAPRDGKFIEKIG 38 (186)
T ss_pred CCCCCeEEEEEEeCCCCCCCCceeeee
Confidence 456999999999999975 4666654
No 34
>CHL00005 rps16 ribosomal protein S16
Probab=27.00 E-value=69 Score=22.26 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=18.8
Q ss_pred eCCCCceEEEEEecCCCCc--eEEEc
Q 047699 67 RNTQPRFQFVVMNRRNTGW--FVVVS 90 (140)
Q Consensus 67 R~~~P~~~liVLNR~s~~n--~~~~l 90 (140)
+...|.|.++|.+.+++-| |+|.|
T Consensus 11 ~kk~P~YrIVvadsr~~RdGk~iE~l 36 (82)
T CHL00005 11 RKQQAVYRIVAIDVRSRREGRDLEKV 36 (82)
T ss_pred CCCCCeEEEEEEeCCCCCCCcceeEe
Confidence 3569999999999999753 56554
No 35
>PRK14520 rpsP 30S ribosomal protein S16; Provisional
Probab=26.99 E-value=60 Score=25.25 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=19.5
Q ss_pred eCCCCceEEEEEecCCCC--ceEEEcc
Q 047699 67 RNTQPRFQFVVMNRRNTG--WFVVVSI 91 (140)
Q Consensus 67 R~~~P~~~liVLNR~s~~--n~~~~l~ 91 (140)
+...|.|+++|++.+++. -|+|.|-
T Consensus 12 ~kk~PfYrIVVaDsR~~RDGk~IE~lG 38 (155)
T PRK14520 12 KIRNPQYRIVVADSRTKRDGRAIEEIG 38 (155)
T ss_pred CCCCCeEEEEEeecCCCCCCCceeeee
Confidence 346999999999999975 4666664
No 36
>COG0228 RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Probab=26.23 E-value=65 Score=22.78 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=18.2
Q ss_pred CCCCceEEEEEecCCCCc--eEEEc
Q 047699 68 NTQPRFQFVVMNRRNTGW--FVVVS 90 (140)
Q Consensus 68 ~~~P~~~liVLNR~s~~n--~~~~l 90 (140)
...|.|+++|+|-+++-| |+|.|
T Consensus 12 kk~P~YrIVVaDsrs~RDGr~IE~l 36 (87)
T COG0228 12 KKRPFYRIVVADSRSPRDGRFIERL 36 (87)
T ss_pred ccCCeEEEEEeccCCCCCCcchhhh
Confidence 468999999999999864 55554
No 37
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=25.90 E-value=1.4e+02 Score=28.88 Aligned_cols=41 Identities=5% Similarity=0.035 Sum_probs=29.6
Q ss_pred eEEEEEeCCCCceEEEEEecCCCCceEEEccCCeeeEeeCCEEEEEeCccc
Q 047699 61 SLFVVKRNTQPRFQFVVMNRRNTGWFVVVSISNEEYNVPNRKYLYANNIEA 111 (140)
Q Consensus 61 ~LFv~~R~~~P~~~liVLNR~s~~n~~~~l~~~~~~e~~~~yli~r~~~~~ 111 (140)
|+|+|-|...-..++++||-+++|-+..+ ++.|.||.-.+-
T Consensus 225 Pfymcle~~~~~~GVflLnSNamEv~~~p----------~p~L~YR~iGGi 265 (805)
T KOG1065|consen 225 PFYLCLEDDSGAHGVFLLNSNAMEVTLRP----------GPSLTYRTIGGI 265 (805)
T ss_pred cceeEeeccCCCceEEEeccCCceEEecc----------CCeeEEEeecce
Confidence 57777776555568888888776544444 889999987753
No 38
>PF08755 YccV-like: Hemimethylated DNA-binding protein YccV like; InterPro: IPR011722 This entry describes the small protein from Escherichia coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein []. The model entry describes a domain in longer eukaryotic proteins.; PDB: 1VBV_A.
Probab=24.96 E-value=95 Score=21.75 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=14.0
Q ss_pred EEEEEeeCC---CCCeeecCceeeEEEEEeCCCCceEEEEEecCC
Q 047699 41 VTFYEFNID---LSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRN 82 (140)
Q Consensus 41 v~vY~f~~~---t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s 82 (140)
+||+-+|+. +.+|-+..-...+ .+..+|.|.+++-++..
T Consensus 19 GVIvgwD~~~~~~~~W~~~~~~~~~---~~~~qPfY~vLv~~~~~ 60 (100)
T PF08755_consen 19 GVIVGWDPECQAPEEWIEQMGVDNL---PRRNQPFYHVLVDDRDS 60 (100)
T ss_dssp EEEEEEE---------------------------EEEEEEE-SS-
T ss_pred EEEECcccccCCCchHHHhcccccc---ccCCCCcEEEEEecCCc
Confidence 677888865 6789665433322 33679999999999977
No 39
>PF08077 Cm_res_leader: Chloramphenicol resistance gene leader peptide; InterPro: IPR012537 This family consists of chloramphenicol (Cm) resistance gene leader peptides. Inducible resistance to Cm in both Gram-positive and Gram-negative bacteria is controlled by translation attenuation. In translation attenuation, the ribosome-binding-site (RBS) for the resistance determinant is sequestered in a secondary structure domain within the mRNA. Preceding the secondary structure is a short, translated ORF termed the leader. Ribosome stalling in the leader causes the destabilisation of the downstream secondary structure, allowing initiation of translation of the Cm resistance gene [].
Probab=24.58 E-value=64 Score=15.92 Aligned_cols=14 Identities=50% Similarity=0.641 Sum_probs=11.0
Q ss_pred cCceeeEEEEEeCC
Q 047699 56 KDVEGSLFVVKRNT 69 (140)
Q Consensus 56 ~~iEG~LFv~~R~~ 69 (140)
.++-|+|-|+.|..
T Consensus 2 sgvpgalavvtrrt 15 (17)
T PF08077_consen 2 SGVPGALAVVTRRT 15 (17)
T ss_pred CCCCceEEEEEEee
Confidence 47889999998863
No 40
>PLN02772 guanylate kinase
Probab=24.18 E-value=1.4e+02 Score=26.55 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=19.3
Q ss_pred EEEEEeeCCCCCeeecCceee
Q 047699 41 VTFYEFNIDLSQWSRKDVEGS 61 (140)
Q Consensus 41 v~vY~f~~~t~~W~K~~iEG~ 61 (140)
-.||-||..++.|.+.-|.|+
T Consensus 51 ~~v~i~D~~t~~W~~P~V~G~ 71 (398)
T PLN02772 51 IGVQILDKITNNWVSPIVLGT 71 (398)
T ss_pred ceEEEEECCCCcEecccccCC
Confidence 479999999999999999986
No 41
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=23.21 E-value=58 Score=26.19 Aligned_cols=22 Identities=41% Similarity=0.854 Sum_probs=19.6
Q ss_pred CCeeecCceeeEEEEEeCCCCc
Q 047699 51 SQWSRKDVEGSLFVVKRNTQPR 72 (140)
Q Consensus 51 ~~W~K~~iEG~LFv~~R~~~P~ 72 (140)
..|.|.+|.|+.|+-.|.+.|+
T Consensus 20 s~wVRlNVGGt~f~TtktTl~r 41 (210)
T KOG2715|consen 20 SLWVRLNVGGTVFLTTKTTLPR 41 (210)
T ss_pred eEEEEEecCCEEEEeeeecccc
Confidence 6899999999999999987664
No 42
>PHA03149 hypothetical protein; Provisional
Probab=21.41 E-value=53 Score=22.00 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=17.1
Q ss_pred eeEE-EEEeCCCCceEEEEEecCCCCceEEEccCCee
Q 047699 60 GSLF-VVKRNTQPRFQFVVMNRRNTGWFVVVSISNEE 95 (140)
Q Consensus 60 G~LF-v~~R~~~P~~~liVLNR~s~~n~~~~l~~~~~ 95 (140)
|+|| +|+|...| | ..+-=.+++..+++
T Consensus 2 G~l~SiCkRr~nP-----l----DV~G~~Inv~~DFE 29 (66)
T PHA03149 2 GTLCSICKRRPNP-----L----DTEGKVINLPDDFE 29 (66)
T ss_pred cceeeeecCCCCC-----c----cCCCcEecchhhhh
Confidence 7777 88898888 2 24444455555554
No 43
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=20.18 E-value=40 Score=29.56 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=29.0
Q ss_pred hhhCCeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCCC
Q 047699 35 LITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTG 84 (140)
Q Consensus 35 l~~a~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~~ 84 (140)
+-.|+-.++-.++.....|.+.|+-.--+=..-...-.||++|+++.+.+
T Consensus 57 ~V~s~D~vl~~~~~~~~~~~~~g~~~la~p~~~~~at~HGVfv~~~~~~~ 106 (414)
T PF07959_consen 57 LVCSGDMVLSVPDDPLIDWDEPGVTALAHPSSLEYATNHGVFVLDRQGPD 106 (414)
T ss_pred EEEecccccccCccccCCCCCCCEEEEEeeCCHHHhcCCeEEEeCCCCCc
Confidence 55556644445555567888855442111111112337999999999864
Done!