Query 047699
Match_columns 140
No_of_seqs 103 out of 183
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 00:34:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lyd_A Decapping protein 1; DC 100.0 5.9E-50 2E-54 299.7 11.1 118 12-138 9-126 (134)
2 2qkl_A DCP1 protein, SPBC3B9.2 100.0 6.7E-50 2.3E-54 297.0 9.2 116 13-138 5-120 (127)
3 1q67_A Decapping protein invol 100.0 1.2E-40 4.1E-45 264.7 10.4 114 15-137 18-216 (231)
4 1evh_A WH1 domain, protein (ME 96.7 0.019 6.4E-07 40.8 9.6 89 38-136 8-101 (112)
5 1ddw_A GLGF-domain protein hom 96.5 0.051 1.7E-06 39.1 11.2 89 38-136 8-100 (120)
6 1qc6_A EVH1 domain from ENA/VA 96.3 0.1 3.5E-06 37.7 11.7 86 38-136 8-102 (130)
7 1egx_A VAsp, vasodilator-stimu 96.0 0.04 1.4E-06 39.3 8.1 89 38-136 8-103 (115)
8 1i2h_A PSD-ZIP45(homer-1C/VESL 95.9 0.16 5.3E-06 38.7 11.7 89 38-136 13-105 (168)
9 1xod_A Spred1; sprouty, EVH1, 95.4 0.21 7.3E-06 35.6 10.3 89 38-136 8-105 (118)
10 2jp2_A Spred-2, sprouty-relate 94.7 0.38 1.3E-05 34.8 10.0 89 38-136 17-114 (126)
11 1mke_A WIP - N-WAsp, fusion pr 93.8 0.71 2.4E-05 34.5 10.1 89 37-137 44-134 (152)
12 2ifs_A N-WAsp, wiskott-aldrich 93.5 1 3.6E-05 34.1 10.6 89 37-137 61-151 (169)
13 4hat_B RAN-specific GTPase-act 89.4 1.6 5.5E-05 31.9 7.4 91 38-135 27-126 (140)
14 3syx_A Sprouty-related, EVH1 d 87.8 6.3 0.00021 28.6 11.7 89 38-136 15-112 (130)
15 3m1i_B RAN-specific GTPase-act 87.2 2.2 7.6E-05 32.9 7.3 91 38-135 78-177 (191)
16 3n7c_A ABR034WP; nuclear pore 86.7 6.9 0.00024 28.0 10.0 90 39-136 16-112 (130)
17 1rrp_B Nuclear pore complex pr 86.0 1.3 4.6E-05 31.7 5.2 94 39-136 27-125 (134)
18 2y8g_A Ranbp3-B, RAN-binding p 84.6 9.2 0.00032 27.5 11.3 89 39-133 20-115 (138)
19 1xke_A RAN-binding protein 2; 83.4 9.9 0.00034 27.0 9.9 91 39-136 13-111 (130)
20 2crf_A RAN binding protein 3; 77.0 19 0.00064 26.2 9.6 89 39-133 32-127 (150)
21 1k5d_B RAN-specific GTPase-act 58.9 59 0.002 24.9 10.0 91 39-136 51-152 (201)
22 2ec1_A Nucleoporin 50 kDa; ran 41.0 89 0.0031 21.8 9.3 93 39-136 18-116 (125)
23 3r8n_P 30S ribosomal protein S 31.9 36 0.0012 22.7 2.8 24 67-90 11-36 (82)
24 3pys_P 30S ribosomal protein S 25.5 31 0.0011 23.1 1.6 23 68-90 12-36 (83)
No 1
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=100.00 E-value=5.9e-50 Score=299.65 Aligned_cols=118 Identities=31% Similarity=0.575 Sum_probs=113.3
Q ss_pred chhhhhhccHHHHhccCcchHHHhhhCCeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCCCceEEEcc
Q 047699 12 DQQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVVVSI 91 (140)
Q Consensus 12 ~~~~~~~lNL~vLqR~Dp~I~~Il~~a~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~~n~~~~l~ 91 (140)
..+++.+|||+||||+||+|++||++|+|||||+||+++++|+|+|||||||||+|+..|+|+|+||||+|++||+++|+
T Consensus 9 ~~~~~~~lNL~vL~R~Dp~I~~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~R~~~P~~~~ivLNR~~~~n~~~~l~ 88 (134)
T 2lyd_A 9 ADESITRMNLAAIKKIDPYAKEIVDSSSHVAFYTFNSSQNEWEKTDVEGAFFIYHRNAEPFHSIFINNRLNTTSFVEPIT 88 (134)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEECSSSSSEEEEEEETTTTEEEEEECC
T ss_pred ChHHHHhhhHHHHhhhCcHHHHHHhhCCeEEEEEecCCcCceeEcCCcceEEEEEccCCCceEEEEEcCCCCcceeEEcC
Confidence 56777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeEeeCCEEEEEeCccceeeccccceeEEEEeechhHHhhhhhh
Q 047699 92 SNEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQERGLVQLF 138 (140)
Q Consensus 92 ~~~~~e~~~~yli~r~~~~~~~~~~~~~i~GiW~f~~~~e~~~i~~~ 138 (140)
++++++++++||+||++++++ + ||| ||+++||++|++.
T Consensus 89 ~~~~~e~~~~~li~r~~~~~I-~-------GiW-f~~~~d~~~i~~~ 126 (134)
T 2lyd_A 89 GSLELQSQPPFLLYRNERSRI-R-------GFW-FYNSEECDRISGL 126 (134)
T ss_dssp SSCEEEEETTEEEEEEGGGEE-E-------EEE-ESSHHHHHHHHHH
T ss_pred CCcEEEeeCCEEEEECCCCcE-E-------EEE-ecChHHHHHHHHH
Confidence 999999999999999988776 5 999 9999999999874
No 2
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=100.00 E-value=6.7e-50 Score=297.03 Aligned_cols=116 Identities=22% Similarity=0.428 Sum_probs=105.2
Q ss_pred hhhhhhccHHHHhccCcchHHHhhhCCeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCCCceEEEccC
Q 047699 13 QQSTKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVVVSIS 92 (140)
Q Consensus 13 ~~~~~~lNL~vLqR~Dp~I~~Il~~a~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~~n~~~~l~~ 92 (140)
...++++||+||||+||+|++||++|+|||||+||+++++|+|+|||||||||+|+ +|+|+|+||||+|++||+++|++
T Consensus 5 ~~~r~~lNL~vL~R~Dp~I~~Il~~a~~v~vY~f~~~~~~W~K~~iEGtLFv~~R~-~P~~~~iVlNR~~~~n~~~~i~~ 83 (127)
T 2qkl_A 5 NILRNAVNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVKDQ-RARVGYVILNRNSPENLYLFINH 83 (127)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEEEEEEEEEECC------CCEEEEEEEEEEEEET-TCCEEEEEEESSSSCCEEEEECS
T ss_pred HHHHHHhHHHHHhhhCchHHHHhccCCeEEEEEecCCCCceEEcCcEEEEEEEEcc-CCceEEEEEcCCCCcCeeEecCC
Confidence 45778999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CeeeEeeCCEEEEEeCccceeeccccceeEEEEeechhHHhhhhhh
Q 047699 93 NEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQERGLVQLF 138 (140)
Q Consensus 93 ~~~~e~~~~yli~r~~~~~~~~~~~~~i~GiW~f~~~~e~~~i~~~ 138 (140)
++++++++|||+||++++++ + ||| ||+++||++|++-
T Consensus 84 ~~~~e~~~~~l~~r~~~~~i-~-------GiW-f~~~~d~~~i~~~ 120 (127)
T 2qkl_A 84 PSNVHLVDRYLIHRTENQHV-V-------GLW-MFDPNDMSRIFNI 120 (127)
T ss_dssp GGGEEEETTEEEEEETTTEE-E-------EEE-ESSTHHHHHHHHH
T ss_pred CceEEEeCCEEEEEcCCCcE-E-------EEE-EEchHHHHHHHHH
Confidence 99999999999999988766 5 999 9999999999863
No 3
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7
Probab=100.00 E-value=1.2e-40 Score=264.75 Aligned_cols=114 Identities=19% Similarity=0.411 Sum_probs=103.8
Q ss_pred hhhhccHHHHhccCcchHHHhhhCCeEEEEEeeCCCCCeeecCceeeEEEEEeCCCC-----------------------
Q 047699 15 STKLLSLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQP----------------------- 71 (140)
Q Consensus 15 ~~~~lNL~vLqR~Dp~I~~Il~~a~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P----------------------- 71 (140)
.|++|||+||+|+||.|++||++|+||+||+||.++++|+|+++||+||||.|+..|
T Consensus 18 yRkaLNlnVL~RyDP~IkqIL~~t~hasvYkfd~~~~eW~K~~~eG~LfIy~Rd~~p~~~~l~~s~~~~~~~~~~~~~~~ 97 (231)
T 1q67_A 18 YRKALNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAIYLRDVSQNTNLLPVSPQEVDIFDSQNGSNN 97 (231)
T ss_dssp ----CCHHHHHHHCTTEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECCC------------------------
T ss_pred HHHHhHHHHHHhhChhHHHHHhcCCeEEEEEecCCCCceEecCcEEEEEEEEecCCCCccccCcccccccchhccccccc
Confidence 479999999999999999999999999999999999999999999999999998766
Q ss_pred -----------------------------------------ceEEEEEecCCCCceEEEccC------------------
Q 047699 72 -----------------------------------------RFQFVVMNRRNTGWFVVVSIS------------------ 92 (140)
Q Consensus 72 -----------------------------------------~~~liVLNR~s~~n~~~~l~~------------------ 92 (140)
+|+||||||++++||+++|+|
T Consensus 98 ~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~l~~~d~y~yglIILNR~npeNfs~~I~pn~v~n~r~~f~~~~~~~~ 177 (231)
T 1q67_A 98 IQVNNGSDNSNRNSSGNGNSYKSNDSLTYNCGKTLSGKDIYNYGLIILNRINPDNFSMGIVPNSVVNKRKVFNAEEDTLN 177 (231)
T ss_dssp -------------------------------------CCCCSEEEEEEESSSSCEEEEEECCHHHHHHHHHHCHHHHHHS
T ss_pred cccccccccccccccccccccccccccccccccccccccccceeEEEEecCCcccceeeccccccccccccccccccccC
Confidence 699999999999999999994
Q ss_pred ---CeeeEeeCCEEEEEeCccceeeccccceeEEEEeechhHHhhhhh
Q 047699 93 ---NEEYNVPNRKYLYANNIEARVFAMLLSSVKYWPFYDNQERGLVQL 137 (140)
Q Consensus 93 ---~~~~e~~~~yli~r~~~~~~~~~~~~~i~GiW~f~~~~e~~~i~~ 137 (140)
.+++|++++|||||+...++ + ||| ||+++||++|++
T Consensus 178 ~l~~m~vEv~d~lvI~kn~~~eV-y-------GIW-ih~~~Dr~~I~e 216 (231)
T 1q67_A 178 PLECMGVEVKDELVIIKNLKHEV-Y-------GIW-IHTVSDRQNIYE 216 (231)
T ss_dssp CCCCCEEEEETTEEEEECTTSCE-E-------EEE-ESSHHHHHHHHH
T ss_pred cccccceEecCCEEEEEcCCCcE-E-------EEE-EccHHHHHHHHH
Confidence 47999999999999988776 5 999 999999999986
No 4
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=96.66 E-value=0.019 Score=40.80 Aligned_cols=89 Identities=9% Similarity=0.141 Sum_probs=64.2
Q ss_pred CCeEEEEEeeCCCCCeeecCce-ee--EEEEEeCCCCceEEEEEecCCCC-ceEEEccCCeeeEeeCC-EEEEEeCccce
Q 047699 38 AAHVTFYEFNIDLSQWSRKDVE-GS--LFVVKRNTQPRFQFVVMNRRNTG-WFVVVSISNEEYNVPNR-KYLYANNIEAR 112 (140)
Q Consensus 38 a~~v~vY~f~~~t~~W~K~~iE-G~--LFv~~R~~~P~~~liVLNR~s~~-n~~~~l~~~~~~e~~~~-yli~r~~~~~~ 112 (140)
++-|.||.+|+.++.|.+.+-. |. +-+|+..+...|.++..-=.+.. =+--.|.+++.+...-+ |.-+|.++. .
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~~~g~s~V~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w~~~~~-~ 86 (112)
T 1evh_A 8 QARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGLKYNQATQTFHQWRDARQ-V 86 (112)
T ss_dssp EEEEEEEEEETTTTEEEEGGGCCSCEEEEEEEETTTTEEEEEEEETTTCCEEEEEEECTTCCCBCCSSSEEEEECSSC-E
T ss_pred EEEEEEEEEcCCCCceEECCCCCCceEEEEEEECCCCEEEEEEEECCCCcEEEeeEecCCceEEecCccceeEecCCE-E
Confidence 4678999999999999999964 43 78888876666776655422333 23346778888855444 778887753 3
Q ss_pred eeccccceeEEEEeechhHHhhhh
Q 047699 113 VFAMLLSSVKYWPFYDNQERGLVQ 136 (140)
Q Consensus 113 ~~~~~~~i~GiW~f~~~~e~~~i~ 136 (140)
+ ||= |-+++|.....
T Consensus 87 -~-------GLn-F~se~eA~~F~ 101 (112)
T 1evh_A 87 -Y-------GLN-FGSKEDANVFA 101 (112)
T ss_dssp -E-------EEE-ESSHHHHHHHH
T ss_pred -E-------EEe-cCCHHHHHHHH
Confidence 5 999 99999987764
No 5
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=96.52 E-value=0.051 Score=39.10 Aligned_cols=89 Identities=7% Similarity=0.153 Sum_probs=62.7
Q ss_pred CCeEEEEEeeCCCC-CeeecC-ceeeEEEEEeCCCCceEEEEEecCCCCc-eEEEccCCeeeEeeC-CEEEEEeCcccee
Q 047699 38 AAHVTFYEFNIDLS-QWSRKD-VEGSLFVVKRNTQPRFQFVVMNRRNTGW-FVVVSISNEEYNVPN-RKYLYANNIEARV 113 (140)
Q Consensus 38 a~~v~vY~f~~~t~-~W~K~~-iEG~LFv~~R~~~P~~~liVLNR~s~~n-~~~~l~~~~~~e~~~-~yli~r~~~~~~~ 113 (140)
++-|.||.+|+.++ .|.+.+ -.|++-+|...+...|+++=+. +..- +--.|.+++.+...- .|..+|.++...+
T Consensus 8 ~~rA~V~~~D~~tk~~W~p~g~~~~~V~~~~d~~~~~yRIv~~~--~~~vv~n~~i~~~l~y~~a~p~FhqW~d~~~~~~ 85 (120)
T 1ddw_A 8 STRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLD--GSKAIINSTITPNMTFTKTSQKFGQWADSRANTV 85 (120)
T ss_dssp EEEEEEEEECTTTSCSEEESCSSCEEEEEEEETTTTEEEEEEEE--TTEEEEEEECCTTCCCEECSSSEEEEEETTTTEE
T ss_pred EEEEEEEEEcCCCCCceEeCCCCceEEEEEEcCCCCEEEEEEcc--CCEEEEeCEecCCcEEeeCCccccEEEcCCCcEE
Confidence 35689999999885 999944 3367777887777778876543 3332 234677888885544 4889997773233
Q ss_pred eccccceeEEEEeechhHHhhhh
Q 047699 114 FAMLLSSVKYWPFYDNQERGLVQ 136 (140)
Q Consensus 114 ~~~~~~i~GiW~f~~~~e~~~i~ 136 (140)
+ ||= |-+++|.....
T Consensus 86 ~-------GLn-F~s~~eA~~F~ 100 (120)
T 1ddw_A 86 Y-------GLG-FSSEHHLSKFA 100 (120)
T ss_dssp E-------EEE-CSSHHHHHHHH
T ss_pred E-------Eec-cCCHHHHHHHH
Confidence 5 999 99999987654
No 6
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=96.27 E-value=0.1 Score=37.66 Aligned_cols=86 Identities=10% Similarity=0.152 Sum_probs=55.3
Q ss_pred CCeEEEEEeeCCCCCeeecCceeeEE-----EEEeCCCCceEEEEEecC--CCC-ceEEEccCCeeeE-eeCCEEEEEeC
Q 047699 38 AAHVTFYEFNIDLSQWSRKDVEGSLF-----VVKRNTQPRFQFVVMNRR--NTG-WFVVVSISNEEYN-VPNRKYLYANN 108 (140)
Q Consensus 38 a~~v~vY~f~~~t~~W~K~~iEG~LF-----v~~R~~~P~~~liVLNR~--s~~-n~~~~l~~~~~~e-~~~~yli~r~~ 108 (140)
++-|.||.+|+++++|.+.+ .|.+- |+.-.. .+.+=|.-|+ +.. -+--.|.+++.+. ..+-|..|+.+
T Consensus 8 ~~~A~V~~~d~~~~~W~~~g-~G~~~l~~V~i~~~~~--~~~~Riv~~~~~~~~vi~n~~i~~~~~y~~~~~~Fh~w~~~ 84 (130)
T 1qc6_A 8 QARASVMVYDDTSKKWVPIK-PGQQGFSRINIYHNTA--SSTFRVVGVKLQDQQVVINYSIVKGLKYNQATPTFHQWRDA 84 (130)
T ss_dssp EEEEEEEEEETTTTEEEECC------CEEEEEEEETT--TTEEEEEEECTTTCCEEEEEECCTTCEEEEEETTEEEEECS
T ss_pred EEEEEEEEECCCCCceeECC-CCceeeeEEEEEecCC--CcEEEEEEEeCCCCeEEEeeEEeCCcEEeccCCeeEEEEcC
Confidence 35688999999999999998 66443 344333 3444455553 332 3345678888885 45558888776
Q ss_pred ccceeeccccceeEEEEeechhHHhhhh
Q 047699 109 IEARVFAMLLSSVKYWPFYDNQERGLVQ 136 (140)
Q Consensus 109 ~~~~~~~~~~~i~GiW~f~~~~e~~~i~ 136 (140)
+. . + ||= |-+++|.....
T Consensus 85 ~~-~-~-------GL~-F~se~eA~~F~ 102 (130)
T 1qc6_A 85 RQ-V-Y-------GLN-FASKEEATTFS 102 (130)
T ss_dssp SC-E-E-------EEE-ESCHHHHHHHH
T ss_pred CE-E-E-------EEe-cCCHHHHHHHH
Confidence 53 3 5 999 99999987654
No 7
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=95.98 E-value=0.04 Score=39.26 Aligned_cols=89 Identities=9% Similarity=0.141 Sum_probs=64.1
Q ss_pred CCeEEEEEeeCCCCCeeecCc--ee--eEEEEEeCCCCceEEEEEecC-CCC-ceEEEccCCeeeEee-CCEEEEEeCcc
Q 047699 38 AAHVTFYEFNIDLSQWSRKDV--EG--SLFVVKRNTQPRFQFVVMNRR-NTG-WFVVVSISNEEYNVP-NRKYLYANNIE 110 (140)
Q Consensus 38 a~~v~vY~f~~~t~~W~K~~i--EG--~LFv~~R~~~P~~~liVLNR~-s~~-n~~~~l~~~~~~e~~-~~yli~r~~~~ 110 (140)
++-|.||.+|+.+++|.+.+. +| ++-+|+......|.|+..-=+ +.. =+--.|.+++.+... +.|.-+|.++.
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~g~~gvs~V~~~~d~~~~~yrI~~~~l~~~~~vv~~~~l~~~l~y~~~~p~FH~w~~~~~ 87 (115)
T 1egx_A 8 SSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQWRDARQ 87 (115)
T ss_dssp EEEEECBEECTTTSSCCBSSCSCCCCEEEEEEEETTTTEEEEEEEESSTTCCEEEEEEECSSCCCCCSSTTEEEEESSSC
T ss_pred EEEEEEEEEcCCCCceeECCCCCCCccEEEEEEeCCCCEEEEEEEEcCCCCEEEEeeEEcCCceEEecCccceEEecCCE
Confidence 456889999999999999987 68 488898876666766554433 222 223457788887544 44778887753
Q ss_pred ceeeccccceeEEEEeechhHHhhhh
Q 047699 111 ARVFAMLLSSVKYWPFYDNQERGLVQ 136 (140)
Q Consensus 111 ~~~~~~~~~i~GiW~f~~~~e~~~i~ 136 (140)
. + ||= |-+++|.....
T Consensus 88 -~-~-------GLn-F~se~eA~~F~ 103 (115)
T 1egx_A 88 -V-W-------GLN-FGSKEDAAQFA 103 (115)
T ss_dssp -E-E-------EEE-ESSHHHHHHHH
T ss_pred -E-E-------EEe-cCCHHHHHHHH
Confidence 3 5 999 99999987754
No 8
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=95.92 E-value=0.16 Score=38.75 Aligned_cols=89 Identities=7% Similarity=0.161 Sum_probs=62.4
Q ss_pred CCeEEEEEeeCCCC-CeeecC-ceeeEEEEEeCCCCceEEEEEecCCCCc-eEEEccCCeee-EeeCCEEEEEeCcccee
Q 047699 38 AAHVTFYEFNIDLS-QWSRKD-VEGSLFVVKRNTQPRFQFVVMNRRNTGW-FVVVSISNEEY-NVPNRKYLYANNIEARV 113 (140)
Q Consensus 38 a~~v~vY~f~~~t~-~W~K~~-iEG~LFv~~R~~~P~~~liVLNR~s~~n-~~~~l~~~~~~-e~~~~yli~r~~~~~~~ 113 (140)
++-|.||.+|+.++ .|.+.+ -.|.+-+|+......|+++=+. +.+- +--.|.+++.+ .....|..||.++...+
T Consensus 13 s~rA~Vm~~D~~tk~~WvP~g~~~~~V~i~~d~~rnsyRIvg~~--d~kvvinc~I~~~l~Y~kasp~FHqW~d~~~~~v 90 (168)
T 1i2h_A 13 STRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLD--GSKAIINSTITPNMTFTKTSQKFGQWADSRANTV 90 (168)
T ss_dssp EEEEEEEEECTTSSCCSEESCSSCEEEEEEEETTTTEEEEEEEE--TTEEEEEEECCTTCCEEEEETTEEEEEETTTTEE
T ss_pred EEEEEEEEECCCCCCceeecCCCCeEEEEEEcCCCCEEEEEEcc--CCEEEEecEecCCcEEeeCCcccceeecCCCcEE
Confidence 45689999999876 999954 3456667777666668876543 3332 22357788887 55566889998773233
Q ss_pred eccccceeEEEEeechhHHhhhh
Q 047699 114 FAMLLSSVKYWPFYDNQERGLVQ 136 (140)
Q Consensus 114 ~~~~~~i~GiW~f~~~~e~~~i~ 136 (140)
+ ||= |-+++|.....
T Consensus 91 ~-------GLn-F~Se~eA~~F~ 105 (168)
T 1i2h_A 91 Y-------GLG-FSSEHHLSKFA 105 (168)
T ss_dssp E-------EEE-ESSHHHHHHHH
T ss_pred E-------Eec-cCCHHHHHHHH
Confidence 5 999 99999987654
No 9
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=95.44 E-value=0.21 Score=35.61 Aligned_cols=89 Identities=13% Similarity=0.071 Sum_probs=58.5
Q ss_pred CCeEEEEEeeCCCCCeeecCcee--eEEEEEeC-----CCCceEEEEEecCCCC-ceEEEccCCeee-EeeCCEEEEEeC
Q 047699 38 AAHVTFYEFNIDLSQWSRKDVEG--SLFVVKRN-----TQPRFQFVVMNRRNTG-WFVVVSISNEEY-NVPNRKYLYANN 108 (140)
Q Consensus 38 a~~v~vY~f~~~t~~W~K~~iEG--~LFv~~R~-----~~P~~~liVLNR~s~~-n~~~~l~~~~~~-e~~~~yli~r~~ 108 (140)
++-|.|+.+|+.++.|.+.+--| .+-||... ..-.|.|+...=.+.. =+--.|.+++.+ +....|.-+|.+
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~g~ls~v~i~~~~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w~~~ 87 (118)
T 1xod_A 8 RVRAVVMTRDDSSGGWLQLGGGGLSSVTVSKTLQPGDSGGTEFLVHGERLRDKTVVLECVLRRDLVYNKVTPTFHHWRIG 87 (118)
T ss_dssp EEEEEEEEECSSSSCEEEGGGCCCEEEEEECC---------CCEEEEEETTTCCEEEEEECCTTCEEEEEETTEEEEEET
T ss_pred EEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCcCCCCCCEEEEEEEECCCCeEEEEEEEeCCcEEEecCCcceEEEeC
Confidence 45688999999999999988644 25566542 2334655544312332 233457788887 555668899876
Q ss_pred ccceeeccccceeEEEEeechhHHhhhh
Q 047699 109 IEARVFAMLLSSVKYWPFYDNQERGLVQ 136 (140)
Q Consensus 109 ~~~~~~~~~~~i~GiW~f~~~~e~~~i~ 136 (140)
+. . + ||= |-+++|.....
T Consensus 88 ~~-~-~-------GL~-F~se~eA~~F~ 105 (118)
T 1xod_A 88 DK-K-F-------GLT-FQSPADARAFD 105 (118)
T ss_dssp TE-E-E-------EEE-ESSHHHHHHHH
T ss_pred CE-E-E-------EEe-cCCHHHHHHHH
Confidence 43 3 5 999 99999997754
No 10
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=94.75 E-value=0.38 Score=34.76 Aligned_cols=89 Identities=10% Similarity=0.053 Sum_probs=59.4
Q ss_pred CCeEEEEEeeCCCCCeeecCceee--EEEEEeC---CCCc--eEEEEEecCCCC-ceEEEccCCeee-EeeCCEEEEEeC
Q 047699 38 AAHVTFYEFNIDLSQWSRKDVEGS--LFVVKRN---TQPR--FQFVVMNRRNTG-WFVVVSISNEEY-NVPNRKYLYANN 108 (140)
Q Consensus 38 a~~v~vY~f~~~t~~W~K~~iEG~--LFv~~R~---~~P~--~~liVLNR~s~~-n~~~~l~~~~~~-e~~~~yli~r~~ 108 (140)
++-|.||.+|+.++.|.+.+--|. .-||... ..|+ |.|+..-=.+.. =+--.|.+++.+ .....|.-+|.+
T Consensus 17 ~~~A~Vm~~D~~~~~W~p~~~g~ls~v~v~~~~~~~d~~~~~yrI~~~~l~d~~vv~~~~l~~~l~Y~~~~p~FH~w~~~ 96 (126)
T 2jp2_A 17 RVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPTFHHWKVD 96 (126)
T ss_dssp EEEEEEEEECTTSSSSEECSCCSCEEEEEECCBCTTCSSCBCEEEEEEESSSSCEEEEEEESSCCCEEEEETTEEEEECS
T ss_pred EEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCCCCCCCCEEEEEEEEcCCCeEEEEEEEeCCceEEecCCcceEEEcC
Confidence 567899999999999999886442 4556543 3343 544443312332 333467788887 555668889877
Q ss_pred ccceeeccccceeEEEEeechhHHhhhh
Q 047699 109 IEARVFAMLLSSVKYWPFYDNQERGLVQ 136 (140)
Q Consensus 109 ~~~~~~~~~~~i~GiW~f~~~~e~~~i~ 136 (140)
+. . + ||= |-+++|.....
T Consensus 97 ~~-~-~-------GLn-F~se~eA~~F~ 114 (126)
T 2jp2_A 97 NR-K-F-------GLT-FQSPADARAFD 114 (126)
T ss_dssp SS-E-E-------EEE-ESSHHHHHHHH
T ss_pred CE-E-E-------EEe-cCCHHHHHHHH
Confidence 64 3 4 999 99999987764
No 11
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=93.84 E-value=0.71 Score=34.48 Aligned_cols=89 Identities=21% Similarity=0.320 Sum_probs=63.9
Q ss_pred hCCeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCCC-ceEEEccCCeeeEeeCC-EEEEEeCccceee
Q 047699 37 TAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTG-WFVVVSISNEEYNVPNR-KYLYANNIEARVF 114 (140)
Q Consensus 37 ~a~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~~-n~~~~l~~~~~~e~~~~-yli~r~~~~~~~~ 114 (140)
.++-|-||.-++. ++|.+. ..|.+-+++-...-.|-|=|...++.. -|-..|..++++...-+ |..|..++. .
T Consensus 44 ataVaqLy~a~~~-~~W~~~-~~Gal~~VkD~~~rsyf~RlvDl~~~~viweqELY~~f~Y~~~r~~FHtFe~d~c-~-- 118 (152)
T 1mke_A 44 SSAVVQLYAADRN-CMWSKK-CSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTC-Q-- 118 (152)
T ss_dssp EEEEEEEEEEETT-TEEEEE-EEEEEEEEEETTTTEEEEEEECSSSCSEEEEEECCSSCCCBCSSSSEEEEECSSS-E--
T ss_pred EEeeEEEEEECCC-CceEec-CceEEEEEEECCCCeEEEEEEEccCCeEEEEeecccceeeccCCCeEEEEecCCc-E--
Confidence 3567889999875 799996 799999999876555655555555543 55567888888855555 557765433 2
Q ss_pred ccccceeEEEEeechhHHhhhhh
Q 047699 115 AMLLSSVKYWPFYDNQERGLVQL 137 (140)
Q Consensus 115 ~~~~~i~GiW~f~~~~e~~~i~~ 137 (140)
+||= |-+++|+....+
T Consensus 119 ------~GLn-Fade~EA~~F~~ 134 (152)
T 1mke_A 119 ------VALN-FANEEEAKKFRK 134 (152)
T ss_dssp ------EEEE-ESSHHHHHHHHH
T ss_pred ------EEEe-eCCHHHHHHHHH
Confidence 3999 999999987654
No 12
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=93.48 E-value=1 Score=34.10 Aligned_cols=89 Identities=21% Similarity=0.308 Sum_probs=64.2
Q ss_pred hCCeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCC-CceEEEccCCeeeEeeCC-EEEEEeCccceee
Q 047699 37 TAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNT-GWFVVVSISNEEYNVPNR-KYLYANNIEARVF 114 (140)
Q Consensus 37 ~a~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~-~n~~~~l~~~~~~e~~~~-yli~r~~~~~~~~ 114 (140)
.++-|-||.-++. +.|.+. ..|.+-+++-...-.|-|=|...++. --|-..|..++++...-+ |..+..++. .
T Consensus 61 ataVaqLy~a~~~-~~W~~~-~~Gal~~vkD~~~rsyf~RlvDl~~~~vvweqELY~~f~Y~~~r~~FHtFe~d~c-~-- 135 (169)
T 2ifs_A 61 SSAVVQLYAADRN-CMWSKK-CSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTC-Q-- 135 (169)
T ss_dssp EEEEEEEEEEETT-TEEEEE-EEEEEEEEEETTTTEEEEEEEETTTCCCCEEEECCSSCCCBCCCSSEEEEECSSS-E--
T ss_pred EEEEEEEEEECCC-CeeEec-CceEEEEEEECCCCeEEEEEEEccCCeEEEEeecccceeeccCCCeEEEeecCCc-E--
Confidence 3567789999875 799996 79999999887655565555555544 356677888888855555 667764433 2
Q ss_pred ccccceeEEEEeechhHHhhhhh
Q 047699 115 AMLLSSVKYWPFYDNQERGLVQL 137 (140)
Q Consensus 115 ~~~~~i~GiW~f~~~~e~~~i~~ 137 (140)
+||= |-+++|+....+
T Consensus 136 ------~GLn-Fade~EA~~F~~ 151 (169)
T 2ifs_A 136 ------VALN-FANEEEAKKFRK 151 (169)
T ss_dssp ------EEEE-CSCHHHHHHHHH
T ss_pred ------EEEe-eCCHHHHHHHHH
Confidence 3999 999999987654
No 13
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=89.36 E-value=1.6 Score=31.88 Aligned_cols=91 Identities=13% Similarity=0.225 Sum_probs=58.7
Q ss_pred CCeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCCCceEEE--ccCCeeeEeeC---CEEEEEe----C
Q 047699 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVVV--SISNEEYNVPN---RKYLYAN----N 108 (140)
Q Consensus 38 a~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~~n~~~~--l~~~~~~e~~~---~yli~r~----~ 108 (140)
+..|-||.|+.++++|...|+ |+|.|.+....-.++ +||=|.++...+.. |.+++.++-.. .-+++-. +
T Consensus 27 ~~raKLf~f~~~~~~WkerG~-G~lkilk~k~~~k~R-llmR~d~~~kv~lN~~i~~~m~~~~~~~s~k~~v~~~~~D~s 104 (140)
T 4hat_B 27 KVRAKLFRFDKDAKEWKERGT-GDCKFLKNKKTNKVR-ILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIA 104 (140)
T ss_dssp EEEEEEEEEETTTTEEEEEEE-EEEEEEEETTTCCEE-EEEECTTTCCEEEEEECCTTCCCBCCTTCSSEEEEEEEEECT
T ss_pred EEeEEEEEEcCCCCCcccccE-EEEEEEEcCCCCeEE-EEEEecCcceEEEEeEecCCeEEeEcCCCCceEEEEccccCC
Confidence 345889999988899998886 899998766555676 45656666777765 77888877652 3334421 1
Q ss_pred ccceeeccccceeEEEEeechhHHhhh
Q 047699 109 IEARVFAMLLSSVKYWPFYDNQERGLV 135 (140)
Q Consensus 109 ~~~~~~~~~~~i~GiW~f~~~~e~~~i 135 (140)
+++ ....-+.|= |=++++++..
T Consensus 105 dg~----~~~~~~~iR-fk~~e~A~~f 126 (140)
T 4hat_B 105 EGE----AEAFTFAIR-FGSKENADKF 126 (140)
T ss_dssp TSS----CEEEEEEEE-ESSHHHHHHH
T ss_pred CCC----CceEEEEEE-ECCHHHHHHH
Confidence 221 012334666 7677766554
No 14
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=87.82 E-value=6.3 Score=28.65 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=62.8
Q ss_pred CCeEEEEEeeCCCCCeeecCcee--eEEEEEeCCC---CceEEEEEecCC-CCceEE--EccCCeee-EeeCCEEEEEeC
Q 047699 38 AAHVTFYEFNIDLSQWSRKDVEG--SLFVVKRNTQ---PRFQFVVMNRRN-TGWFVV--VSISNEEY-NVPNRKYLYANN 108 (140)
Q Consensus 38 a~~v~vY~f~~~t~~W~K~~iEG--~LFv~~R~~~---P~~~liVLNR~s-~~n~~~--~l~~~~~~-e~~~~yli~r~~ 108 (140)
.+-|+|..+|+.++.|.-.+=.| ..+||..... -+-.+-|--|+- -..+++ .|.+++.+ +.++.|=-+|..
T Consensus 15 ~~rA~Vm~~Dd~tk~WlP~gg~glS~v~iy~~~~~~~~~~~~yRIvg~r~~d~~vvinc~I~~~l~Ynkatp~FHqWrd~ 94 (130)
T 3syx_A 15 RVRAVVMTRDDSSGGWLPLGGSGLSSVTVFKVPHQEENGCADFFIRGERLRDKMVVLECMLKKDLIYNKVTPTFHHWKID 94 (130)
T ss_dssp EEEEEEEEECSSSSCEEESSSSCCEEEEEEEEESSSTTSSEEEEEEEEETTTCCEEEEEECCTTCEEEEEETTEEEEEET
T ss_pred EEEEEeeeEcCCCCceEeCCCCCCceEEEEeccCCCCCCCcEEEEEEEecCCCeEEEeeeecCCceEEeccccccccccc
Confidence 34688999999999999987444 4677875322 234455555533 233444 67888888 777779999987
Q ss_pred ccceeeccccceeEEEEeechhHHhhhh
Q 047699 109 IEARVFAMLLSSVKYWPFYDNQERGLVQ 136 (140)
Q Consensus 109 ~~~~~~~~~~~i~GiW~f~~~~e~~~i~ 136 (140)
+. + + ||= |-+++|.....
T Consensus 95 ~~-~-y-------GL~-F~S~~dA~~F~ 112 (130)
T 3syx_A 95 DK-K-F-------GLT-FQSPADARAFD 112 (130)
T ss_dssp TE-E-E-------EEE-ESSHHHHHHHH
T ss_pred Ce-E-e-------ecc-cCCHHHHHHHH
Confidence 73 3 6 999 99999987654
No 15
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=87.16 E-value=2.2 Score=32.92 Aligned_cols=91 Identities=13% Similarity=0.230 Sum_probs=59.8
Q ss_pred CCeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCCCceEEE--ccCCeeeEeeC---CEEEEEe----C
Q 047699 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVVV--SISNEEYNVPN---RKYLYAN----N 108 (140)
Q Consensus 38 a~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~~n~~~~--l~~~~~~e~~~---~yli~r~----~ 108 (140)
...|-||.|+.++++|.-.|+ |+|-|.+....-+++ +||=|.++-.++.. |++++.++... .-+++-. .
T Consensus 78 ~~RaKLf~f~~~~~~WKERGv-G~lkilk~ket~k~R-llMR~d~~~kV~LN~~I~~~m~~~~~~~sdks~v~~~~~D~s 155 (191)
T 3m1i_B 78 KVRAKLFRFDADAKEWKERGT-GDCKFLKNKKTNKVR-ILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIA 155 (191)
T ss_dssp EEEEEEEEEETTTTEEEEEEE-EEEEEEEETTTCCEE-EEEECTTTCCEEEEEECCTTCCCBCCTTCSSEEEEEEEEECT
T ss_pred EEeeEEEEEecCCCCccceeE-EEEEEEEcCCCCeEE-EEEEecCcceEEEeeecCCCcEEeECCCCCceEEEEecCcCC
Confidence 357899999988899998886 889998776555676 45555666777766 78888887752 3444432 1
Q ss_pred ccceeeccccceeEEEEeechhHHhhh
Q 047699 109 IEARVFAMLLSSVKYWPFYDNQERGLV 135 (140)
Q Consensus 109 ~~~~~~~~~~~i~GiW~f~~~~e~~~i 135 (140)
+++. ....+.|= |=+.++++..
T Consensus 156 dge~----k~e~~aIR-Fk~~E~A~eF 177 (191)
T 3m1i_B 156 EGEA----EAFTFAIR-FGSKENADKF 177 (191)
T ss_dssp TSSC----EEEEEEEE-CSSHHHHHHH
T ss_pred CCCc----ceEEEEEE-ECCHHHHHHH
Confidence 2210 12334666 7677666543
No 16
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=86.71 E-value=6.9 Score=27.99 Aligned_cols=90 Identities=9% Similarity=0.190 Sum_probs=56.4
Q ss_pred CeEEEEEeeCCCCCeeecCceeeEEEEEeCC-CCceEEEEEecCCCCceEEE--ccCCeeeEeeC----CEEEEEeCccc
Q 047699 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKRNT-QPRFQFVVMNRRNTGWFVVV--SISNEEYNVPN----RKYLYANNIEA 111 (140)
Q Consensus 39 ~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~-~P~~~liVLNR~s~~n~~~~--l~~~~~~e~~~----~yli~r~~~~~ 111 (140)
.-|-||.||.++++|...|+ |+|-|.+... .-.+++ ||=|.+.-.++.. |.+++.++..+ .++-+....+.
T Consensus 16 ~raKL~~f~~~~~~WkerG~-G~lkil~~k~~~~k~Rl-lmR~d~~~kv~lN~~i~~~m~~~~~~~~~~~~v~~~~~~dg 93 (130)
T 3n7c_A 16 EKAKLLIFDSDTKGYTSRGV-GELKLLRKKDDKGKVRV-LCRSEGMGHVLLNTSVVKSFKYQPIDADNENLIKWPIITDG 93 (130)
T ss_dssp EEEEEEEECC---CEEEEEE-EEEEEEEETTEEEEEEE-EEEC-CCCCEEEEEECCTTBCCEESCTTCTTEEEEEEEETT
T ss_pred EEEEEEEEeCCCCCchhcce-EEEEEEEecCCCCEEEE-EEEecCCceEEeeccccCCcEEeEcCCCCccEEEEEecCCC
Confidence 45889999998899998885 8999987653 345664 4445556666655 78888887764 46655432111
Q ss_pred eeeccccceeEEEEeechhHHhhhh
Q 047699 112 RVFAMLLSSVKYWPFYDNQERGLVQ 136 (140)
Q Consensus 112 ~~~~~~~~i~GiW~f~~~~e~~~i~ 136 (140)
...-+.|= |=++++++...
T Consensus 94 -----k~~~~~lr-fks~e~A~~f~ 112 (130)
T 3n7c_A 94 -----KLETFIIK-VKQKADGRRLV 112 (130)
T ss_dssp -----EEEEEEEE-CSSHHHHHHHH
T ss_pred -----ceEEEEEE-ECCHHHHHHHH
Confidence 12345777 87888776653
No 17
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=85.98 E-value=1.3 Score=31.74 Aligned_cols=94 Identities=12% Similarity=0.277 Sum_probs=58.5
Q ss_pred CeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCCCceEEE--ccCCeeeEee---CCEEEEEeCcccee
Q 047699 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVVV--SISNEEYNVP---NRKYLYANNIEARV 113 (140)
Q Consensus 39 ~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~~n~~~~--l~~~~~~e~~---~~yli~r~~~~~~~ 113 (140)
..|-||.||.++++|...|+ |+|-|.+....-.++++ |=|.+...++.. |.+++.++.. +..+.+-..+...
T Consensus 27 ~raKL~~~~~~~~~WkerG~-G~lkil~~k~~~k~Rlv-mR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d- 103 (134)
T 1rrp_B 27 NRAKLFRFDVESKEWKERGI-GNVKILRHKTSGKIRLL-MRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYAD- 103 (134)
T ss_dssp EEEEEEEECSSSSCEEEEEE-EEEEEEEESSSCCCEEE-EECTTTCCEEECCBCCSSCCCBCSTTCTTEEEEEEEECTT-
T ss_pred EEEEEEEEcccCCCcccCcE-EEEEEEEECCCCeEEEE-EEEcCCCcEEEEeEecCCceEeecCCCCeEEEEEcccccC-
Confidence 46899999988899999886 89998876655566654 444445555554 5677777654 3455553321100
Q ss_pred eccccceeEEEEeechhHHhhhh
Q 047699 114 FAMLLSSVKYWPFYDNQERGLVQ 136 (140)
Q Consensus 114 ~~~~~~i~GiW~f~~~~e~~~i~ 136 (140)
-......+.|= |=++++++.+.
T Consensus 104 ~~~k~~~~~ir-fk~~e~A~~f~ 125 (134)
T 1rrp_B 104 ELPKPEQLAIR-FKTPEEAALFK 125 (134)
T ss_dssp SSCEEEEEEEE-CSSHHHHHHHH
T ss_pred CCCceEEEEEE-ECCHHHHHHHH
Confidence 00123445777 77777776553
No 18
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=84.59 E-value=9.2 Score=27.51 Aligned_cols=89 Identities=7% Similarity=0.053 Sum_probs=58.4
Q ss_pred CeEEEEEeeCCCCCeeecCceeeEEEEEeCC--C--CceEEEEEecCCCCceEE--EccCCeeeEee-CCEEEEEeCccc
Q 047699 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKRNT--Q--PRFQFVVMNRRNTGWFVV--VSISNEEYNVP-NRKYLYANNIEA 111 (140)
Q Consensus 39 ~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~--~--P~~~liVLNR~s~~n~~~--~l~~~~~~e~~-~~yli~r~~~~~ 111 (140)
.-|-||.|+.++++|...|+ |+|-|.+... . -+++++ |=|.+.-.++. .|.+++.++.. +..+.+...+.+
T Consensus 20 ~raKL~~f~~~~~~WkERG~-G~lkil~~k~~~~~t~k~Rlv-mR~d~~~kv~lN~~i~~~m~~~~~~~k~~~~~~~d~~ 97 (138)
T 2y8g_A 20 MQCKLFVFDKTSQSWVAVGR-GLLRLNDMASTDDGTLQSRLV-MRTQGSLRLILNTKLWAQMQIDKASEKSIRITAMDTE 97 (138)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEEEEECTTTCCEEEEEE-EEETTTCCEEEEEECCTTCCEEEEETTEEEEECCC--
T ss_pred EEeEEEEEecCCCCchhceE-EEEEEEEeccCCCCCccEEEE-EEEcCcceEEEeeEecCCceeecCCCCEEEEEEecCC
Confidence 46889999998899999997 9999987642 1 245554 44444445555 47788888764 678888654332
Q ss_pred eeeccccceeEEEEeechhHHh
Q 047699 112 RVFAMLLSSVKYWPFYDNQERG 133 (140)
Q Consensus 112 ~~~~~~~~i~GiW~f~~~~e~~ 133 (140)
. .....+.|= |-.+++.+
T Consensus 98 d---~~~~~~lir-fk~~e~a~ 115 (138)
T 2y8g_A 98 D---QGVKVFLIS-ASSKDTGQ 115 (138)
T ss_dssp C---CCCCEEEEE-CCHHHHHH
T ss_pred C---CceEEEEEE-ECCHHHHH
Confidence 1 123456777 66666553
No 19
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=83.45 E-value=9.9 Score=26.96 Aligned_cols=91 Identities=13% Similarity=0.283 Sum_probs=58.3
Q ss_pred CeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCCCceEE--EccCCeeeEee---CCEEEEEe---Ccc
Q 047699 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVV--VSISNEEYNVP---NRKYLYAN---NIE 110 (140)
Q Consensus 39 ~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~~n~~~--~l~~~~~~e~~---~~yli~r~---~~~ 110 (140)
.-|-||.|+.++++|.-.|+ |+|.|.+....-.+++++ =|.+...++. .|.+++.++.. +.-+.+.. .++
T Consensus 13 ~raKL~~~~~~~~~WkERG~-G~lkil~~k~~~k~Rlvm-R~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~ 90 (130)
T 1xke_A 13 QRVKLFRFDAEVSQWKERGL-GNLKILKNEVNGKLRMLM-RREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDG 90 (130)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEEEETTSSCEEEEE-EETTTTEEEEEEECCTTSCEEECTTCSSCEEEEEEECSSS
T ss_pred EEEEEEEEcCCCCCcccCcE-EEEEEEEcCCCCeEEEEE-EEcCCCeEEEecEeCCCcEEeecCCCCeEEEEEecccCCC
Confidence 45889999988899999886 899998876666676654 4444444444 46788887764 33344432 111
Q ss_pred ceeeccccceeEEEEeechhHHhhhh
Q 047699 111 ARVFAMLLSSVKYWPFYDNQERGLVQ 136 (140)
Q Consensus 111 ~~~~~~~~~i~GiW~f~~~~e~~~i~ 136 (140)
+ .....+.|= |=++++++...
T Consensus 91 ~----~~~~~~~ir-fks~e~a~~f~ 111 (130)
T 1xke_A 91 D----AKLEQLAAK-FKTPELAEEFK 111 (130)
T ss_dssp C----SEEEEEEEE-CSSHHHHHHHH
T ss_pred C----CceEEEEEE-ECCHHHHHHHH
Confidence 1 123445777 77777776543
No 20
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=76.99 E-value=19 Score=26.23 Aligned_cols=89 Identities=6% Similarity=0.053 Sum_probs=56.6
Q ss_pred CeEEEEEeeCCCCCeeecCceeeEEEEEeCC----CCceEEEEEecCCCCceEE--EccCCeeeEe-eCCEEEEEeCccc
Q 047699 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKRNT----QPRFQFVVMNRRNTGWFVV--VSISNEEYNV-PNRKYLYANNIEA 111 (140)
Q Consensus 39 ~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~----~P~~~liVLNR~s~~n~~~--~l~~~~~~e~-~~~yli~r~~~~~ 111 (140)
.-|-||.||.++++|...|+ |+|-|.+... .-++++++= |.+.-.++. .|.+++.++. .+..+.+...+.+
T Consensus 32 ~raKL~~fd~~~~~WkERG~-G~lkil~~k~~~~~t~k~RlvmR-~d~~~kv~lN~~i~~~m~~~~~~~k~~~~~~~d~~ 109 (150)
T 2crf_A 32 MQCKLFVFDKTSQSWVERGR-GLLRLNDMASTDDGTLQSRLVMR-TQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTE 109 (150)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEEEEECSSSCSEEEEEEEE-ESSSCCEEEEEECCTTCCEECCSSSEEEEEEEBSS
T ss_pred EEeEEEEEcCCCCCccccee-EEEEEEeccccCCCCccEEEEEE-EcCcceEEeeeeccCCceeecCCCCEEEEEeecCC
Confidence 35899999998899998885 8888887542 224655443 334444444 4678888875 3568877643321
Q ss_pred eeeccccceeEEEEeechhHHh
Q 047699 112 RVFAMLLSSVKYWPFYDNQERG 133 (140)
Q Consensus 112 ~~~~~~~~i~GiW~f~~~~e~~ 133 (140)
. .....+.|= |-.+++++
T Consensus 110 d---~~~~~~lir-fk~~e~a~ 127 (150)
T 2crf_A 110 D---QGVKVFLIS-ASSKDTGQ 127 (150)
T ss_dssp S---CCEEEEEEE-CCHHHHHH
T ss_pred C---CceEEEEEE-ECCHHHHH
Confidence 1 113356777 77776664
No 21
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=58.88 E-value=59 Score=24.90 Aligned_cols=91 Identities=13% Similarity=0.278 Sum_probs=56.1
Q ss_pred CeEEEEEe--eCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCCCceEE--EccCCeeeEee---CCEEEEEe----
Q 047699 39 AHVTFYEF--NIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFVV--VSISNEEYNVP---NRKYLYAN---- 107 (140)
Q Consensus 39 ~~v~vY~f--~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~~n~~~--~l~~~~~~e~~---~~yli~r~---- 107 (140)
.-|-||.| +.++++|.-.|+ |+|.|.+....-.++|++ =|.+.-.++. .|.+++.+... +..+++-.
T Consensus 51 ~RaKLf~f~~d~~~~~WKERGv-G~lkIlk~k~t~k~RlvM-R~d~~~kV~LN~~I~~~m~~~~~~~s~ks~v~~~~~d~ 128 (201)
T 1k5d_B 51 MRAKLFRFASENDLPEWKERGT-GDVKLLKHKEKGAIRLLM-RRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADF 128 (201)
T ss_dssp EEEEEEEECCTTSSCCEEEEEE-EEEEEEECSSSCCEEEEE-EETTTCCEEEEEECCSSCCCCBCSSCSSEEEEEEEEEC
T ss_pred EeeeEEEecccccCCCccccce-EEEEEEEcCCCCcEEEEE-EECCcceEEEeeEecCCceeeecCCCCceEEEEecccc
Confidence 46899999 777899999886 899998776555666544 4444445444 46777777654 33444422
Q ss_pred CccceeeccccceeEEEEeechhHHhhhh
Q 047699 108 NIEARVFAMLLSSVKYWPFYDNQERGLVQ 136 (140)
Q Consensus 108 ~~~~~~~~~~~~i~GiW~f~~~~e~~~i~ 136 (140)
++++. ....+.|= |=+.++++...
T Consensus 129 ad~~~----k~e~~~iR-fks~e~A~~f~ 152 (201)
T 1k5d_B 129 ADECP----KPELLAIR-FLNAENAQKFK 152 (201)
T ss_dssp TTSSC----EEEEEEEE-CSSHHHHHHHH
T ss_pred CCCCC----ceEEEEEE-ECCHHHHHHHH
Confidence 11111 12335666 76777665543
No 22
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.04 E-value=89 Score=21.78 Aligned_cols=93 Identities=11% Similarity=0.120 Sum_probs=58.5
Q ss_pred CeEEEEEeeCCCCCeeecCceeeEEEEEeCCCCceEEEEEecCCCCceE--EEccCCeeeEeeC--CEEEEEeCcc--ce
Q 047699 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNRRNTGWFV--VVSISNEEYNVPN--RKYLYANNIE--AR 112 (140)
Q Consensus 39 ~~v~vY~f~~~t~~W~K~~iEG~LFv~~R~~~P~~~liVLNR~s~~n~~--~~l~~~~~~e~~~--~yli~r~~~~--~~ 112 (140)
.-|-||.|+. ++|.-.|+ |+|-|-+.. .-+++|++=+..+....+ ..|.+++.++..+ ...++-.... +.
T Consensus 18 ~raKLf~~~~--~~WkERGv-G~lki~~~k-~~k~RllmR~d~~~~kv~lN~~i~~~m~~~~~g~~~~~~~~~~~~~~d~ 93 (125)
T 2ec1_A 18 KKCKLFYKKD--NEFKEKGI-GTLHLKPTA-NQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDE 93 (125)
T ss_dssp EEEEEEEECS--SSEEEEEE-EEEEEEECS-SSSEEEEEEESSSSCCBSCCEECCSSCCEECCTTTEEEEEECCSSCSCS
T ss_pred EeeEEEEecC--CCcccccE-EEEEeeecC-CCcEEEEEEecCCCCEEEEeeEEcCCCeEEecCCCcEEEEEccCCcccC
Confidence 4578999964 79999987 899996543 346666655444443433 3477888888763 4555644332 10
Q ss_pred eeccccceeEEEEeechhHHhhhh
Q 047699 113 VFAMLLSSVKYWPFYDNQERGLVQ 136 (140)
Q Consensus 113 ~~~~~~~i~GiW~f~~~~e~~~i~ 136 (140)
........+-|. |=++++++..+
T Consensus 94 ~~~~~~~~~~lr-fk~~e~a~~f~ 116 (125)
T 2ec1_A 94 KNATMPVTMLIR-VKTSEDADELH 116 (125)
T ss_dssp SSSSSCEEEEEE-CSSHHHHHHHH
T ss_pred CCCCceEEEEEE-ECCHHHHHHHH
Confidence 000124567999 98988887764
No 23
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=31.86 E-value=36 Score=22.69 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=18.9
Q ss_pred eCCCCceEEEEEecCCCC--ceEEEc
Q 047699 67 RNTQPRFQFVVMNRRNTG--WFVVVS 90 (140)
Q Consensus 67 R~~~P~~~liVLNR~s~~--n~~~~l 90 (140)
+...|.|.++|.+.+++- -|+|.|
T Consensus 11 ~kk~PfYrIVvadsr~~RdGr~IE~l 36 (82)
T 3r8n_P 11 AKKRPFYQVVVADSRNARNGRFIERV 36 (82)
T ss_dssp CTTSCCEEEEEEETTSCTTSCEEEEE
T ss_pred CCCCCEEEEEEeecCCCCCCCceeee
Confidence 356999999999999975 466655
No 24
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=25.51 E-value=31 Score=23.07 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=18.3
Q ss_pred CCCCceEEEEEecCCCC--ceEEEc
Q 047699 68 NTQPRFQFVVMNRRNTG--WFVVVS 90 (140)
Q Consensus 68 ~~~P~~~liVLNR~s~~--n~~~~l 90 (140)
...|.|.++|.+.+++- -|+|.|
T Consensus 12 kkrPfYrIVvadsr~~RdGr~IE~l 36 (83)
T 3pys_P 12 KHNPHYRIVVTDARRKRDGKYIEKI 36 (83)
T ss_dssp TTCCCCCCEEEESSSCTTCCCSEEC
T ss_pred CCCCeEEEEEEecCCCCCCCceeee
Confidence 56899999999999975 456555
Done!