BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047700
(629 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 32/177 (18%)
Query: 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIE 358
++ L GL L Q+ + + L+NL L L + DIS + L L+ LS + +
Sbjct: 111 LTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD 169
Query: 359 WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEA 418
P + LT L LD+SS KV +V++KLT LE L N +
Sbjct: 170 LKP--LANLTTLERLDISSN---KVSDISVLAKLTNLESLIATNNQI------------- 211
Query: 419 SATFVFP-KVISNLEELKLGG---KDITMICQDHLPKHLFQNLKSLEVVSDKSDNFS 471
+ + P +++NL+EL L G KDI + NL L++ +++ N +
Sbjct: 212 --SDITPLGILTNLDELSLNGNQLKDIGTLAS-------LTNLTDLDLANNQISNLA 259
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 322 LSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNL 381
L+NL++L + DI+ +G L L+ LSL + ++ + + LT L LDL++
Sbjct: 198 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQIS 256
Query: 382 KVIPPNVISKLTQLEELYMG 401
+ P +S LT+L EL +G
Sbjct: 257 NLAP---LSGLTKLTELKLG 273
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 32/177 (18%)
Query: 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIE 358
++ L GL L Q+ + + L+NL L L + DIS + L L+ LS + +
Sbjct: 110 LTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD 168
Query: 359 WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEA 418
P + LT L LD+SS KV +V++KLT LE L N +
Sbjct: 169 LKP--LANLTTLERLDISSN---KVSDISVLAKLTNLESLIATNNQI------------- 210
Query: 419 SATFVFP-KVISNLEELKLGG---KDITMICQDHLPKHLFQNLKSLEVVSDKSDNFS 471
+ + P +++NL+EL L G KDI + NL L++ +++ N +
Sbjct: 211 --SDITPLGILTNLDELSLNGNQLKDIGTLAS-------LTNLTDLDLANNQISNLA 258
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 322 LSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNL 381
L+NL++L + DI+ +G L L+ LSL + ++ + + LT L LDL++
Sbjct: 197 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQIS 255
Query: 382 KVIPPNVISKLTQLEELYMG 401
+ P +S LT+L EL +G
Sbjct: 256 NLAP---LSGLTKLTELKLG 272
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 31/177 (17%)
Query: 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIE 358
++ L GL L Q+ + + L+NL L L + DIS + L L+ LS + +
Sbjct: 106 LTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVT 164
Query: 359 WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEA 418
L + LT L LD+SS KV +V++KLT LE L N +
Sbjct: 165 DLK-PLANLTTLERLDISSN---KVSDISVLAKLTNLESLIATNNQI------------- 207
Query: 419 SATFVFP-KVISNLEELKLGG---KDITMICQDHLPKHLFQNLKSLEVVSDKSDNFS 471
+ + P +++NL+EL L G KDI + NL L++ +++ N +
Sbjct: 208 --SDITPLGILTNLDELSLNGNQLKDIGTLAS-------LTNLTDLDLANNQISNLA 255
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 31/177 (17%)
Query: 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIE 358
++ L GL L Q+ + + L+NL L L + DIS + L L+ LS + +
Sbjct: 106 LTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVT 164
Query: 359 WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEA 418
L + LT L LD+SS KV +V++KLT LE L N +
Sbjct: 165 DLK-PLANLTTLERLDISSN---KVSDISVLAKLTNLESLIATNNQI------------- 207
Query: 419 SATFVFP-KVISNLEELKLGG---KDITMICQDHLPKHLFQNLKSLEVVSDKSDNFS 471
+ + P +++NL+EL L G KDI + NL L++ +++ N +
Sbjct: 208 --SDITPLGILTNLDELSLNGNQLKDIGTLAS-------LTNLTDLDLANNQISNLA 255
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 32/177 (18%)
Query: 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIE 358
++ L GL L Q+ + + L+NL L L + DIS + L L+ L+ + +
Sbjct: 106 LTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTD 164
Query: 359 WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEA 418
P + LT L LD+SS KV +V++KLT LE L N +
Sbjct: 165 LKP--LANLTTLERLDISSN---KVSDISVLAKLTNLESLIATNNQI------------- 206
Query: 419 SATFVFP-KVISNLEELKLGG---KDITMICQDHLPKHLFQNLKSLEVVSDKSDNFS 471
+ + P +++NL+EL L G KDI + NL L++ +++ N +
Sbjct: 207 --SDITPLGILTNLDELSLNGNQLKDIGTLAS-------LTNLTDLDLANNQISNLA 254
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 322 LSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNL 381
L+NL++L + DI+ +G L L+ LSL + ++ + + LT L LDL++
Sbjct: 193 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQIS 251
Query: 382 KVIPPNVISKLTQLEELYMG 401
+ P +S LT+L EL +G
Sbjct: 252 NLAP---LSGLTKLTELKLG 268
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 32/177 (18%)
Query: 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIE 358
++ L GL L Q+ + + L+NL L L + DIS + L L+ L+ + +
Sbjct: 106 LTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTD 164
Query: 359 WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEA 418
P + LT L LD+SS KV +V++KLT LE L N +
Sbjct: 165 LKP--LANLTTLERLDISSN---KVSDISVLAKLTNLESLIATNNQI------------- 206
Query: 419 SATFVFP-KVISNLEELKLGG---KDITMICQDHLPKHLFQNLKSLEVVSDKSDNFS 471
+ + P +++NL+EL L G KDI + NL L++ +++ N +
Sbjct: 207 --SDITPLGILTNLDELSLNGNQLKDIGTLAS-------LTNLTDLDLANNQISNLA 254
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 322 LSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNL 381
L+NL++L + DI+ +G L L+ LSL + ++ + + LT L LDL++
Sbjct: 193 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQIS 251
Query: 382 KVIPPNVISKLTQLEELYMG 401
+ P +S LT+L EL +G
Sbjct: 252 NLAP---LSGLTKLTELKLG 268
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 31/177 (17%)
Query: 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIE 358
++ L GL L Q+ + + L+NL L L + DIS + L L+ L+ + +
Sbjct: 106 LTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVT 164
Query: 359 WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEA 418
L + LT L LD+SS KV +V++KLT LE L N +
Sbjct: 165 DLK-PLANLTTLERLDISSN---KVSDISVLAKLTNLESLIATNNQI------------- 207
Query: 419 SATFVFP-KVISNLEELKLGG---KDITMICQDHLPKHLFQNLKSLEVVSDKSDNFS 471
+ + P +++NL+EL L G KDI + NL L++ +++ N +
Sbjct: 208 --SDITPLGILTNLDELSLNGNQLKDIGTLAS-------LTNLTDLDLANNQISNLA 255
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 322 LSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNL 381
L+NL++L + DI+ +G L L+ LSL + ++ + + LT L LDL++
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQIS 252
Query: 382 KVIPPNVISKLTQLEELYMG 401
+ P +S LT+L EL +G
Sbjct: 253 NLAP---LSGLTKLTELKLG 269
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVL--GDISIIGNLEKLENLSLVD-S 355
+ L+ L + L +L ++H L L+ L L C I G L+ L L D S
Sbjct: 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264
Query: 356 DIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLT 393
++ LP +I LTQL LDL C NL + P++I++L
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRL-PSLIAQLP 301
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 277 LNDIEIGVLPKGLEYPQL--------EFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTL 328
L ++ I P+ E P+ E + L+ L L + SLP S+ L NL++L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Query: 329 CLDQCVLGDI-SIIGNLEKLENLSLVD-SDIEWLPNEIGELTQLRLLDLSSCWNLKVIPP 386
+ L + I +L KLE L L + + P G L+ L L C NL +P
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271
Query: 387 NVISKLTQLEEL 398
+ I +LTQLE+L
Sbjct: 272 D-IHRLTQLEKL 282
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 19/149 (12%)
Query: 317 QSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEI-GELTQLRLLDL 375
Q + L N++ L L L DIS + L L L L + ++ LPN + +LT L+ L L
Sbjct: 57 QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 376 SSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELK 435
L+ +P V KLT L LY+ + ++ +G VF K ++NL L
Sbjct: 117 VEN-QLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKG-----------VFDK-LTNLTRLD 163
Query: 436 LGGKDITMICQDHLPKHLFQNLKSLEVVS 464
L + LP+ +F L L+ +S
Sbjct: 164 LDNNQL-----QSLPEGVFDKLTQLKQLS 187
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 19/146 (13%)
Query: 317 QSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEI-GELTQLRLLDL 375
Q + L N++ L L L DIS + L L L L + ++ LPN + +LT L+ L L
Sbjct: 57 QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 376 SSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELK 435
L+ +P V KLT L L + + ++ +G VF K ++NL EL
Sbjct: 117 VEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-----------VFDK-LTNLTELD 163
Query: 436 LGGKDITMICQDHLPKHLFQNLKSLE 461
L + LP+ +F L L+
Sbjct: 164 LSYNQL-----QSLPEGVFDKLTQLK 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 323 SNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWN-L 381
+ L L LD+C L + + G L L L L + ++ LP L L +LD+S +N L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS--FNRL 112
Query: 382 KVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDI 441
+P + L +L+ELY+ +K G + P LE+L L D+
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPG----------LLTP--TPKLEKLSLANNDL 160
Query: 442 TMICQDHLPKHLFQNLKSLEVV 463
T LP L L++L+ +
Sbjct: 161 T-----ELPAGLLNGLENLDTL 177
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 350 LSLVDSDIEWL-PNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVK 406
L L D+ I L P LTQL LDL + L V+P V KLTQL +L + + +K
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLK 99
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 350 LSLVDSDIEWL-PNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVK 406
L L D+ I L P LTQL LDL + L V+P V KLTQL +L + + +K
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLK 91
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 341 IGNLEKLENLSLVDSDIEW-LPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELY 399
IG++ L L+L +DI +P+E+G+L L +LDLSS L P +S LT L E+
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEID 707
Query: 400 MGNT 403
+ N
Sbjct: 708 LSNN 711
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 350 LSLVDSDIEWL-PNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVK 406
L L D+ I L P LTQL LDL + L V+P V KLTQL +L + + +K
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLK 91
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 341 IGNLEKLENLSLVDSDIEW-LPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELY 399
IG++ L L+L +DI +P+E+G+L L +LDLSS L P +S LT L E+
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEID 710
Query: 400 MGNT 403
+ N
Sbjct: 711 LSNN 714
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 323 SNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWN-L 381
+ L L LD+C L + + G L L L L + ++ LP L L +LD+S +N L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS--FNRL 112
Query: 382 KVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDI 441
+P + L +L+ELY+ +K G + P LE+L L ++
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPG----------LLTP--TPKLEKLSLANNNL 160
Query: 442 TMICQDHLPKHLFQNLKSLEVV 463
T LP L L++L+ +
Sbjct: 161 T-----ELPAGLLNGLENLDTL 177
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 323 SNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWN-L 381
+ L L LD+C L + + G L L L L + ++ LP L L +LD+S +N L
Sbjct: 56 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS--FNRL 113
Query: 382 KVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDI 441
+P + L +L+ELY+ +K G + P LE+L L ++
Sbjct: 114 TSLPLGALRGLGELQELYLKGNELKTLPPG----------LLTP--TPKLEKLSLANNNL 161
Query: 442 TMICQDHLPKHLFQNLKSLEVV 463
T LP L L++L+ +
Sbjct: 162 T-----ELPAGLLNGLENLDTL 178
>pdb|3UWR|A Chain A, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Strain 104
pdb|3UWR|B Chain B, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Strain 104
pdb|3UWR|C Chain C, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Strain 104
pdb|3UWR|D Chain D, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Strain 104
Length = 286
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 48 DEIAEQLG------LELCKGTESERARTLFDQLWKEKILIILDDIWANIDLETVGILFGG 101
D EQLG GT+ + + D +W++ I I L +W + +L GG
Sbjct: 96 DSGVEQLGRLDIIVANAGVGTDGRKLHKIRDNVWQDMIDINLTGVWHTVKAGVPHVLSGG 155
Query: 102 AHRGCKILLT 111
RG I+LT
Sbjct: 156 --RGGSIVLT 163
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 323 SNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWN-L 381
+ L L LD+C L + + G L L L L + ++ LP L L +LD+S +N L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS--FNRL 112
Query: 382 KVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDI 441
+P + L +L+ELY+ +K G + P LE+L L +
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPG----------LLTP--TPKLEKLSLANNQL 160
Query: 442 TMICQDHLPKHLFQNLKSLEVV 463
T LP L L++L+ +
Sbjct: 161 T-----ELPAGLLNGLENLDTL 177
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 323 SNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWN-L 381
+ L L LD+C L + + G L L L L + ++ LP L L +LD+S +N L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS--FNRL 112
Query: 382 KVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDI 441
+P + L +L+ELY+ +K G + P LE+L L +
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPG----------LLTP--TPKLEKLSLANNQL 160
Query: 442 TMICQDHLPKHLFQNLKSLEVV 463
T LP L L++L+ +
Sbjct: 161 T-----ELPAGLLNGLENLDTL 177
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 366 ELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFP 425
+LT+L L L++ L +P V LTQL++LY+G +K G VF
Sbjct: 81 DLTELGTLGLAN-NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG-----------VFD 128
Query: 426 KVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE 485
+ ++ L+EL+L + I K NL++L + +++ + G+ R ++ +
Sbjct: 129 R-LTKLKELRLNTNQLQSIPAGAFDK--LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185
Query: 486 L 486
L
Sbjct: 186 L 186
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 366 ELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFP 425
+LT+L L L++ L +P V LTQL++LY+G +K G VF
Sbjct: 81 DLTELGTLGLAN-NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG-----------VFD 128
Query: 426 KVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE 485
+ ++ L+EL+L + I K NL++L + +++ + G+ R ++ +
Sbjct: 129 R-LTKLKELRLNTNQLQSIPAGAFDK--LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185
Query: 486 L 486
L
Sbjct: 186 L 186
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 340 IIGNLEKLENLSLVDSDIE--WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEE 397
I L LE L + + + +LP+ EL L LDLS C L+ + P + L+ L+
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQV 498
Query: 398 LYMGNTFVK 406
L M + +K
Sbjct: 499 LNMASNQLK 507
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 323 SNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWN-L 381
+ L L LD+C L + + G L L L L + ++ LP L L +LD+S +N L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS--FNRL 112
Query: 382 KVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDI 441
+P + L +L+ELY+ +K G + P LE+L L +
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPG----------LLTP--TPKLEKLSLANNQL 160
Query: 442 TMICQDHLPKHLFQNLKSLEVV 463
T LP L L++L+ +
Sbjct: 161 T-----ELPAGLLNGLENLDTL 177
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 292 PQLEFFWMSKLRGLALSKMQLLSLPQSVHL--LSNLQTLCLDQCVLGDISIIGNLEKLEN 349
P F + LR L L +++ L L NL+ L L C L DI + L +LE
Sbjct: 123 PSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEE 182
Query: 350 LSLVDSDIEWL-PNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGN 402
L L + ++ + P LT LR L L + I N L LEEL + +
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHA-QVATIERNAFDDLKSLEELNLSH 235
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 323 SNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWN-L 381
+ L L LD+C L + + G L L L L + ++ LP L L +LD+S +N L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS--FNRL 112
Query: 382 KVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDI 441
+P + L +L+ELY+ +K G + P LE+L L +
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPG----------LLTP--TPKLEKLSLANNQL 160
Query: 442 TMICQDHLPKHLFQNLKSLEVV 463
T LP L L++L+ +
Sbjct: 161 T-----ELPAGLLNGLENLDTL 177
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 292 PQLEFFWMSKLRGLALSKMQLLSLPQSVHL--LSNLQTLCLDQCVLGDISIIGNLEKLEN 349
P F + LR L L +++ L L NL+ L L C L DI + L +LE
Sbjct: 123 PSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEE 182
Query: 350 LSLVDSDIEWL-PNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGN 402
L L + ++ + P LT LR L L + I N L LEEL + +
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHA-QVATIERNAFDDLKSLEELNLSH 235
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 340 IIGNLEKLENLSLVDSDIE--WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEE 397
I L LE L + + + +LP+ EL L LDLS C L+ + P + L+ L+
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQV 203
Query: 398 LYMG-NTFVKWE 408
L M N F +
Sbjct: 204 LNMSHNNFFSLD 215
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 340 IIGNLEKLENLSLVDSDIE--WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEE 397
I L LE L + + + +LP+ EL L LDLS C L+ + P + L+ L+
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQV 498
Query: 398 LYMGNT 403
L M +
Sbjct: 499 LNMSHN 504
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 340 IIGNLEKLENLSLVDSDIE--WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEE 397
I L LE L + + + +LP+ EL L LDLS C L+ + P + L+ L+
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQV 522
Query: 398 LYMGNT 403
L M +
Sbjct: 523 LNMSHN 528
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKL 28
+ V G+ G GK+TL++EVL++A +KL
Sbjct: 652 FVAVTGVSGSGKSTLVNEVLYKALAQKL 679
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 2 IGVYGIGGIGKTTLMHEVLFEAKKEKL 28
+ V G+ G GK+TL++EVL++A +KL
Sbjct: 653 VAVTGVSGSGKSTLVNEVLYKALAQKL 679
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 2 IGVYGIGGIGKTTLMHEVLFEAKKEKL 28
+ V G+ G GK+TL++EVL++A +KL
Sbjct: 351 VAVTGVSGSGKSTLVNEVLYKALAQKL 377
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 17/85 (20%)
Query: 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKG 61
I +YG G GKT L+ EAKK +V++ S+A D+ A+ + L KG
Sbjct: 39 IFIYGSVGTGKTHLLQAAGNEAKKRGY--RVIY----SSA------DDFAQAMVEHLKKG 86
Query: 62 TESERARTLFDQLWKEKILIILDDI 86
T +E F ++K L++LDD+
Sbjct: 87 TINE-----FRNMYKSVDLLLLDDV 106
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 17/85 (20%)
Query: 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKG 61
I +YG G GKT L+ EAKK +V++ S+A D+ A+ + L KG
Sbjct: 40 IFIYGSVGTGKTHLLQAAGNEAKKRGY--RVIY----SSA------DDFAQAMVEHLKKG 87
Query: 62 TESERARTLFDQLWKEKILIILDDI 86
T +E F ++K L++LDD+
Sbjct: 88 TINE-----FRNMYKSVDLLLLDDV 107
>pdb|3PZ6|A Chain A, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|B Chain B, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|C Chain C, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|D Chain D, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|E Chain E, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|F Chain F, The Crystal Structure Of Glleurs-Cp1
Length = 311
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 44 EKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKI 79
+ + D +AE+L ++L + + + + +FDQLW+ ++
Sbjct: 40 DGMDDSLAEKLNIKLPRFYSNPKNKAIFDQLWENQV 75
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 317 QSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVD---SDIEWLPNEIGELTQLRLL 373
Q + L+NL+ L L+ + DIS + NL KL NL + +DI L N LT LR L
Sbjct: 60 QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQN----LTNLREL 115
Query: 374 DLSSCWNLKVIPPNVISKLTQLEELYMG 401
L+ N+ I P ++ LT+ L +G
Sbjct: 116 YLNED-NISDISP--LANLTKXYSLNLG 140
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 340 IIGNLEKLENLSLVDSDIEWLPNEI-GELTQLRLLDLSSCWNLKVIPPNVISKLTQLEEL 398
+ +L L+ L L + + LP + LTQL +LDL + L V+P V +L L+EL
Sbjct: 59 VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHLKEL 117
Query: 399 YM 400
+M
Sbjct: 118 FM 119
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 36/215 (16%)
Query: 324 NLQTLCLDQC----VLGDISIIGNLEKLENL-----SLVDSDIEWLPNEIGELTQLRLLD 374
+L+TL LD+C G +SI+ + K++ L S + D +WL T L +L+
Sbjct: 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN 198
Query: 375 LSSCWNLKVIPPN-----------VISKLTQLEELYMGNTFVKW----EFEGKE-----G 414
K+ P + V K+ E L + F EF G G
Sbjct: 199 FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIG 258
Query: 415 GAEASATFVFPKVISNLEELKLGGKDITMICQDHLP-KHLFQNLKSLEVVSDKSDNFSIG 473
E VFP+ + L +G ++ ++ P + L L + + D+ ++
Sbjct: 259 MPEKYMNLVFPRKLCRLGLSYMGPNEMPIL----FPFAAQIRKLDLLYALLETEDHCTL- 313
Query: 474 SLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNL 508
+Q+ N+E LE R I + YCK+LK L
Sbjct: 314 -IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 10/66 (15%)
Query: 312 LLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDI-EWLPNEIGELTQL 370
L+ LPQ L++L L + DI+++ L KL+ LSL D+ I + +P + LT+L
Sbjct: 127 LVHLPQ-------LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 177
Query: 371 RLLDLS 376
+ L LS
Sbjct: 178 QNLYLS 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,728,397
Number of Sequences: 62578
Number of extensions: 705939
Number of successful extensions: 1859
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1776
Number of HSP's gapped (non-prelim): 117
length of query: 629
length of database: 14,973,337
effective HSP length: 105
effective length of query: 524
effective length of database: 8,402,647
effective search space: 4402987028
effective search space used: 4402987028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)