Query 047700
Match_columns 629
No_of_seqs 305 out of 3279
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 13:49:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.2E-69 1.4E-73 590.4 26.7 557 1-594 181-848 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.6E-53 5.7E-58 492.7 34.3 543 1-614 209-907 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.3E-32 2.9E-37 274.7 9.3 198 1-199 21-284 (287)
4 PLN00113 leucine-rich repeat r 99.9 4.1E-22 8.9E-27 232.4 15.0 286 299-605 139-458 (968)
5 PLN00113 leucine-rich repeat r 99.9 9.2E-22 2E-26 229.5 15.7 313 269-605 139-481 (968)
6 KOG0444 Cytoskeletal regulator 99.8 7.5E-23 1.6E-27 205.4 -1.9 284 269-605 77-368 (1255)
7 KOG4194 Membrane glycoprotein 99.8 1.1E-21 2.3E-26 195.9 5.0 312 268-605 100-445 (873)
8 KOG0444 Cytoskeletal regulator 99.8 2.2E-21 4.7E-26 194.9 -0.2 297 267-605 29-345 (1255)
9 PLN03210 Resistant to P. syrin 99.8 1.1E-18 2.4E-23 203.9 18.1 278 299-614 557-883 (1153)
10 KOG4194 Membrane glycoprotein 99.8 1.6E-19 3.5E-24 180.5 6.0 309 268-605 76-422 (873)
11 KOG0472 Leucine-rich repeat pr 99.8 8.6E-21 1.9E-25 181.5 -6.0 129 269-406 90-219 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 6.2E-19 1.3E-23 168.9 -9.1 262 271-586 46-308 (565)
13 PRK15387 E3 ubiquitin-protein 99.6 4.7E-15 1E-19 161.3 16.7 238 268-587 220-457 (788)
14 PRK15387 E3 ubiquitin-protein 99.6 2.7E-15 5.9E-20 163.2 12.7 255 271-611 202-456 (788)
15 PRK15370 E3 ubiquitin-protein 99.6 5.6E-15 1.2E-19 161.8 12.5 244 271-586 179-426 (754)
16 KOG0617 Ras suppressor protein 99.5 3.4E-16 7.4E-21 133.1 -3.5 150 268-442 31-186 (264)
17 KOG0618 Serine/threonine phosp 99.5 7.6E-16 1.6E-20 162.6 -4.4 100 272-378 47-147 (1081)
18 PRK15370 E3 ubiquitin-protein 99.5 2.1E-13 4.5E-18 149.6 11.1 227 268-559 197-425 (754)
19 KOG0618 Serine/threonine phosp 99.4 5.8E-15 1.3E-19 156.0 -3.0 282 270-605 219-503 (1081)
20 KOG0617 Ras suppressor protein 99.4 6.2E-15 1.3E-19 125.5 -2.4 134 264-406 50-186 (264)
21 KOG4658 Apoptotic ATPase [Sign 99.4 1.5E-12 3.2E-17 145.2 9.2 304 270-604 545-878 (889)
22 KOG4237 Extracellular matrix p 99.2 1.6E-12 3.5E-17 125.2 -0.2 120 276-405 52-176 (498)
23 KOG4237 Extracellular matrix p 99.2 3.7E-12 8.1E-17 122.7 -0.1 274 305-605 51-352 (498)
24 cd00116 LRR_RI Leucine-rich re 99.1 2.5E-11 5.4E-16 123.3 2.0 107 299-406 22-150 (319)
25 cd00116 LRR_RI Leucine-rich re 99.1 4.6E-11 1E-15 121.3 2.6 233 269-529 22-289 (319)
26 KOG3207 Beta-tubulin folding c 99.1 2.1E-11 4.6E-16 119.3 -0.4 137 320-469 118-260 (505)
27 PF14580 LRR_9: Leucine-rich r 98.9 1E-09 2.2E-14 98.4 5.8 106 299-406 18-126 (175)
28 KOG0532 Leucine-rich repeat (L 98.9 8.3E-11 1.8E-15 118.7 -4.6 103 299-405 120-223 (722)
29 PF14580 LRR_9: Leucine-rich r 98.8 7E-09 1.5E-13 92.9 6.5 126 269-402 18-149 (175)
30 KOG3207 Beta-tubulin folding c 98.8 1.4E-09 3E-14 106.8 1.5 159 267-444 118-286 (505)
31 PF05729 NACHT: NACHT domain 98.7 3.9E-08 8.5E-13 89.2 9.0 112 1-117 2-132 (166)
32 KOG1259 Nischarin, modulator o 98.7 2.7E-09 5.8E-14 99.6 0.4 132 299-444 283-414 (490)
33 KOG1259 Nischarin, modulator o 98.7 1.8E-09 3.9E-14 100.7 -1.2 131 267-407 281-413 (490)
34 COG4886 Leucine-rich repeat (L 98.7 1.6E-08 3.5E-13 105.8 5.6 174 270-469 116-291 (394)
35 PRK09376 rho transcription ter 98.7 5.3E-08 1.1E-12 96.8 8.5 86 2-88 172-267 (416)
36 cd01128 rho_factor Transcripti 98.7 7.4E-08 1.6E-12 92.0 8.4 87 2-89 19-115 (249)
37 KOG0532 Leucine-rich repeat (L 98.6 2.8E-09 6E-14 108.0 -2.5 130 267-407 118-248 (722)
38 KOG2120 SCF ubiquitin ligase, 98.6 2.7E-09 5.8E-14 99.6 -4.5 183 324-559 186-373 (419)
39 PF13401 AAA_22: AAA domain; P 98.6 2.6E-07 5.7E-12 80.1 8.3 112 1-114 6-125 (131)
40 KOG4341 F-box protein containi 98.5 3.8E-09 8.2E-14 103.2 -4.6 286 301-614 139-440 (483)
41 TIGR03015 pepcterm_ATPase puta 98.5 1.4E-06 3.1E-11 85.9 12.9 92 1-95 45-143 (269)
42 KOG2982 Uncharacterized conser 98.5 3E-08 6.4E-13 92.7 0.5 85 515-606 196-286 (418)
43 KOG2120 SCF ubiquitin ligase, 98.5 8.2E-09 1.8E-13 96.4 -3.3 106 299-404 184-297 (419)
44 PLN03150 hypothetical protein; 98.5 4.4E-07 9.5E-12 99.7 9.1 101 302-403 420-525 (623)
45 PF13855 LRR_8: Leucine rich r 98.4 3.3E-07 7.1E-12 67.3 4.2 57 300-356 1-60 (61)
46 COG4886 Leucine-rich repeat (L 98.4 4.1E-07 8.8E-12 95.2 6.3 103 299-403 115-219 (394)
47 COG2909 MalT ATP-dependent tra 98.4 8.7E-06 1.9E-10 87.5 16.0 227 1-248 39-340 (894)
48 PF13173 AAA_14: AAA domain 98.4 9.2E-07 2E-11 76.1 7.2 99 1-118 4-102 (128)
49 TIGR00767 rho transcription te 98.4 1.7E-06 3.6E-11 86.8 9.4 87 2-89 171-267 (415)
50 PF13855 LRR_8: Leucine rich r 98.3 5.7E-07 1.2E-11 66.0 3.2 57 346-403 2-59 (61)
51 PRK00411 cdc6 cell division co 98.3 8.2E-06 1.8E-10 85.3 13.1 88 2-89 58-150 (394)
52 PRK04841 transcriptional regul 98.3 2.7E-05 5.8E-10 91.0 18.5 222 1-246 34-332 (903)
53 PLN03150 hypothetical protein; 98.3 2.2E-06 4.8E-11 94.2 8.7 107 271-384 419-531 (623)
54 KOG1859 Leucine-rich repeat pr 98.3 3.9E-08 8.4E-13 102.4 -4.8 130 267-405 161-291 (1096)
55 KOG4341 F-box protein containi 98.2 5.6E-08 1.2E-12 95.2 -3.9 261 324-612 139-413 (483)
56 KOG2982 Uncharacterized conser 98.2 8.1E-07 1.7E-11 83.3 2.6 188 299-536 70-267 (418)
57 PF12799 LRR_4: Leucine Rich r 98.1 3.4E-06 7.3E-11 56.6 4.2 40 300-339 1-40 (44)
58 KOG1909 Ran GTPase-activating 98.1 3.6E-07 7.8E-12 87.7 -1.3 80 299-378 29-130 (382)
59 cd00009 AAA The AAA+ (ATPases 98.1 1.7E-05 3.6E-10 70.1 9.5 103 1-116 21-131 (151)
60 KOG1859 Leucine-rich repeat pr 98.1 8E-08 1.7E-12 100.2 -6.5 161 267-442 106-292 (1096)
61 KOG0531 Protein phosphatase 1, 98.1 6.1E-07 1.3E-11 94.1 -0.6 104 299-405 94-198 (414)
62 KOG0531 Protein phosphatase 1, 98.1 8E-07 1.7E-11 93.2 -0.1 170 267-464 92-264 (414)
63 TIGR02928 orc1/cdc6 family rep 98.0 4E-05 8.7E-10 79.3 12.0 88 2-89 43-141 (365)
64 PRK06893 DNA replication initi 97.9 2E-05 4.4E-10 75.2 6.0 89 2-116 42-135 (229)
65 COG2256 MGS1 ATPase related to 97.9 0.0001 2.2E-09 72.9 10.6 111 3-138 52-174 (436)
66 KOG3665 ZYG-1-like serine/thre 97.9 5.7E-06 1.2E-10 90.7 2.1 104 269-378 121-230 (699)
67 PF12799 LRR_4: Leucine Rich r 97.9 2.2E-05 4.7E-10 52.7 4.0 33 346-378 2-34 (44)
68 PRK08116 hypothetical protein; 97.7 0.00014 3E-09 70.9 9.5 99 2-114 117-220 (268)
69 PRK15386 type III secretion pr 97.7 0.00013 2.8E-09 73.9 9.1 60 322-385 51-111 (426)
70 smart00382 AAA ATPases associa 97.7 0.00017 3.8E-09 63.0 9.0 89 1-92 4-93 (148)
71 PRK15386 type III secretion pr 97.7 0.00015 3.2E-09 73.5 8.4 112 269-405 51-168 (426)
72 KOG3665 ZYG-1-like serine/thre 97.7 2.2E-05 4.9E-10 86.1 2.8 163 233-401 107-283 (699)
73 PF00004 AAA: ATPase family as 97.7 0.00015 3.2E-09 62.7 7.4 23 2-24 1-23 (132)
74 PRK08118 topology modulation p 97.7 2.4E-05 5.1E-10 70.6 2.4 33 2-34 4-37 (167)
75 COG1474 CDC6 Cdc6-related prot 97.6 0.00037 7.9E-09 70.9 10.5 88 2-89 45-135 (366)
76 TIGR03420 DnaA_homol_Hda DnaA 97.6 8E-05 1.7E-09 71.3 5.4 88 2-115 41-133 (226)
77 KOG4579 Leucine-rich repeat (L 97.6 9.4E-06 2E-10 67.5 -1.2 79 300-378 53-133 (177)
78 PRK11331 5-methylcytosine-spec 97.6 0.00016 3.5E-09 74.1 7.1 84 2-89 197-284 (459)
79 PRK08727 hypothetical protein; 97.5 0.00019 4.1E-09 68.7 6.8 87 2-114 44-135 (233)
80 PRK13342 recombination factor 97.5 0.00028 6.2E-09 73.8 8.3 84 2-111 39-125 (413)
81 KOG1909 Ran GTPase-activating 97.5 1.5E-05 3.2E-10 76.9 -1.5 107 299-406 156-283 (382)
82 KOG2028 ATPase related to the 97.4 0.0014 3E-08 63.8 11.3 117 2-139 165-293 (554)
83 PRK12608 transcription termina 97.4 0.001 2.2E-08 66.7 10.8 85 2-87 136-230 (380)
84 PRK07261 topology modulation p 97.4 0.00052 1.1E-08 62.2 7.6 33 2-34 3-36 (171)
85 PF04665 Pox_A32: Poxvirus A32 97.4 0.00041 9E-09 65.4 6.8 34 2-37 16-49 (241)
86 PF00308 Bac_DnaA: Bacterial d 97.3 0.00044 9.5E-09 65.4 6.6 99 2-115 37-140 (219)
87 PRK08181 transposase; Validate 97.3 0.0004 8.6E-09 67.4 6.3 96 2-115 109-209 (269)
88 PRK07003 DNA polymerase III su 97.3 0.0024 5.3E-08 69.4 12.4 122 2-139 41-190 (830)
89 PRK10536 hypothetical protein; 97.3 0.0012 2.7E-08 62.6 8.8 116 1-117 76-215 (262)
90 PF13191 AAA_16: AAA ATPase do 97.3 0.0013 2.8E-08 60.6 9.0 29 1-29 26-54 (185)
91 PRK09183 transposase/IS protei 97.2 0.0011 2.3E-08 64.4 8.3 95 2-113 105-204 (259)
92 KOG4579 Leucine-rich repeat (L 97.2 3.9E-05 8.4E-10 63.9 -1.6 88 271-364 54-142 (177)
93 PF05621 TniB: Bacterial TniB 97.2 0.0025 5.5E-08 61.7 10.4 117 2-118 64-194 (302)
94 cd01133 F1-ATPase_beta F1 ATP 97.2 0.0025 5.4E-08 61.5 10.3 84 2-87 72-173 (274)
95 PTZ00202 tuzin; Provisional 97.2 0.0016 3.5E-08 65.9 9.2 75 1-84 288-368 (550)
96 PRK14088 dnaA chromosomal repl 97.2 0.0015 3.2E-08 68.8 9.5 98 2-113 133-235 (440)
97 PRK05642 DNA replication initi 97.2 0.0013 2.8E-08 63.0 8.4 89 2-116 48-141 (234)
98 PF01695 IstB_IS21: IstB-like 97.2 0.00049 1.1E-08 62.6 5.2 71 2-89 50-120 (178)
99 PRK05564 DNA polymerase III su 97.2 0.0017 3.7E-08 65.4 9.3 101 2-118 29-136 (313)
100 PRK12377 putative replication 97.1 0.0016 3.6E-08 62.3 8.2 76 2-93 104-181 (248)
101 PRK08084 DNA replication initi 97.1 0.00075 1.6E-08 64.7 5.9 35 2-38 48-82 (235)
102 KOG2543 Origin recognition com 97.1 0.0013 2.7E-08 64.8 7.3 85 2-91 33-129 (438)
103 PRK06526 transposase; Provisio 97.1 0.00046 1E-08 66.6 4.4 71 2-89 101-171 (254)
104 PRK14961 DNA polymerase III su 97.1 0.0025 5.4E-08 65.5 10.0 64 76-139 118-190 (363)
105 PRK08939 primosomal protein Dn 97.1 0.0011 2.3E-08 65.9 6.9 95 2-113 159-259 (306)
106 PRK14957 DNA polymerase III su 97.1 0.0023 5E-08 68.3 9.7 122 2-139 41-190 (546)
107 PRK14963 DNA polymerase III su 97.1 0.0075 1.6E-07 64.3 13.5 130 2-139 39-187 (504)
108 PRK14960 DNA polymerase III su 97.1 0.0086 1.9E-07 64.5 13.7 122 2-139 40-189 (702)
109 PRK06645 DNA polymerase III su 97.1 0.012 2.5E-07 62.6 14.7 64 76-139 127-199 (507)
110 KOG1644 U2-associated snRNP A' 97.1 0.00084 1.8E-08 60.1 5.2 99 271-377 43-149 (233)
111 KOG1644 U2-associated snRNP A' 97.1 0.00074 1.6E-08 60.4 4.8 80 324-405 43-125 (233)
112 PRK14087 dnaA chromosomal repl 97.1 0.0018 3.8E-08 68.2 8.6 101 2-115 144-249 (450)
113 TIGR02903 spore_lon_C ATP-depe 97.1 0.0022 4.7E-08 70.3 9.5 115 2-116 178-335 (615)
114 PRK09087 hypothetical protein; 97.1 0.0012 2.7E-08 62.6 6.6 22 2-23 47-68 (226)
115 KOG2123 Uncharacterized conser 97.1 8.4E-05 1.8E-09 69.5 -1.3 99 300-399 19-123 (388)
116 PRK12402 replication factor C 97.1 0.0021 4.4E-08 65.7 8.7 23 2-24 39-61 (337)
117 PRK07952 DNA replication prote 97.0 0.0031 6.7E-08 60.2 9.1 77 2-93 102-180 (244)
118 PTZ00112 origin recognition co 97.0 0.0033 7.2E-08 68.9 10.1 88 2-89 784-881 (1164)
119 TIGR00678 holB DNA polymerase 97.0 0.0047 1E-07 57.1 10.1 97 2-115 17-136 (188)
120 PRK06921 hypothetical protein; 97.0 0.0032 7E-08 61.3 9.3 94 2-113 120-223 (266)
121 PRK14958 DNA polymerase III su 97.0 0.015 3.2E-07 62.2 14.9 122 2-139 41-190 (509)
122 PF13207 AAA_17: AAA domain; P 97.0 0.00046 1E-08 58.6 2.9 23 1-23 1-23 (121)
123 PRK14949 DNA polymerase III su 97.0 0.0025 5.4E-08 70.7 9.2 122 2-139 41-190 (944)
124 PRK08691 DNA polymerase III su 97.0 0.017 3.7E-07 62.8 15.2 64 76-139 118-190 (709)
125 PF01637 Arch_ATPase: Archaeal 97.0 0.0008 1.7E-08 64.6 4.8 87 2-90 23-131 (234)
126 TIGR00362 DnaA chromosomal rep 97.0 0.0021 4.6E-08 67.3 8.1 98 2-114 139-241 (405)
127 PRK13341 recombination factor 97.0 0.0016 3.5E-08 72.1 7.4 23 2-24 55-77 (725)
128 PF02562 PhoH: PhoH-like prote 97.0 0.0015 3.2E-08 60.2 5.9 114 1-117 21-158 (205)
129 PRK00149 dnaA chromosomal repl 97.0 0.0025 5.5E-08 67.6 8.4 98 2-114 151-253 (450)
130 PLN03025 replication factor C 96.9 0.0048 1E-07 62.3 10.0 124 2-139 37-170 (319)
131 COG1484 DnaC DNA replication p 96.9 0.0043 9.3E-08 59.9 8.9 72 2-89 108-179 (254)
132 TIGR02881 spore_V_K stage V sp 96.9 0.0026 5.6E-08 62.2 7.2 23 2-24 45-67 (261)
133 TIGR01242 26Sp45 26S proteasom 96.9 0.0025 5.4E-08 65.7 7.2 24 2-25 159-182 (364)
134 PRK14086 dnaA chromosomal repl 96.9 0.0038 8.2E-08 66.9 8.6 99 2-115 317-420 (617)
135 TIGR02880 cbbX_cfxQ probable R 96.9 0.0041 8.9E-08 61.4 8.4 37 2-38 61-97 (284)
136 KOG1947 Leucine rich repeat pr 96.8 0.00021 4.5E-09 77.0 -0.9 85 320-404 185-280 (482)
137 PRK12323 DNA polymerase III su 96.8 0.0065 1.4E-07 65.2 9.6 64 76-139 123-195 (700)
138 PRK06620 hypothetical protein; 96.8 0.0019 4.1E-08 60.8 5.1 23 2-24 47-69 (214)
139 PRK12422 chromosomal replicati 96.8 0.0052 1.1E-07 64.5 8.9 96 2-114 144-244 (445)
140 PHA02544 44 clamp loader, smal 96.7 0.0048 1E-07 62.3 8.2 94 2-116 46-142 (316)
141 PRK14951 DNA polymerase III su 96.7 0.0074 1.6E-07 65.5 9.9 64 76-139 123-195 (618)
142 PRK14969 DNA polymerase III su 96.7 0.0099 2.2E-07 63.9 10.8 121 3-139 42-190 (527)
143 PRK06835 DNA replication prote 96.7 0.0063 1.4E-07 61.0 8.6 98 2-114 186-288 (329)
144 TIGR02237 recomb_radB DNA repa 96.7 0.006 1.3E-07 57.5 8.2 83 1-87 14-107 (209)
145 PRK04195 replication factor C 96.7 0.0072 1.6E-07 64.7 9.7 91 2-114 42-139 (482)
146 CHL00181 cbbX CbbX; Provisiona 96.7 0.0051 1.1E-07 60.7 7.7 24 2-25 62-85 (287)
147 PF00006 ATP-synt_ab: ATP synt 96.7 0.0058 1.2E-07 57.1 7.6 81 2-86 18-114 (215)
148 COG5238 RNA1 Ran GTPase-activa 96.7 0.00076 1.6E-08 63.1 1.6 85 299-384 29-135 (388)
149 KOG2739 Leucine-rich acidic nu 96.7 0.0011 2.4E-08 62.0 2.7 61 299-359 64-130 (260)
150 PRK07994 DNA polymerase III su 96.7 0.0063 1.4E-07 66.2 8.8 65 75-139 117-190 (647)
151 PRK05541 adenylylsulfate kinas 96.7 0.0029 6.3E-08 57.7 5.5 34 1-36 9-42 (176)
152 PRK14956 DNA polymerase III su 96.7 0.006 1.3E-07 63.5 8.3 130 2-139 43-192 (484)
153 PRK04296 thymidine kinase; Pro 96.7 0.0038 8.3E-08 57.6 6.2 111 1-118 4-119 (190)
154 PRK14962 DNA polymerase III su 96.7 0.0077 1.7E-07 63.6 9.1 23 2-24 39-61 (472)
155 KOG1947 Leucine rich repeat pr 96.6 0.00026 5.6E-09 76.3 -2.0 62 343-404 186-254 (482)
156 COG1618 Predicted nucleotide k 96.6 0.0028 6E-08 54.7 4.6 33 2-35 8-40 (179)
157 PF05496 RuvB_N: Holliday junc 96.6 0.0058 1.2E-07 56.6 7.0 25 2-26 53-77 (233)
158 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0093 2E-07 57.3 8.9 86 1-87 21-125 (235)
159 KOG2123 Uncharacterized conser 96.6 9.1E-05 2E-09 69.2 -4.8 106 321-435 17-123 (388)
160 PRK09361 radB DNA repair and r 96.6 0.0088 1.9E-07 57.1 8.6 83 1-87 25-117 (225)
161 KOG0735 AAA+-type ATPase [Post 96.6 0.0065 1.4E-07 64.5 7.9 70 2-88 434-505 (952)
162 PRK14964 DNA polymerase III su 96.6 0.013 2.9E-07 61.7 10.0 122 2-139 38-187 (491)
163 PRK00440 rfc replication facto 96.5 0.02 4.3E-07 58.0 11.0 98 2-114 41-141 (319)
164 cd01120 RecA-like_NTPases RecA 96.5 0.024 5.2E-07 50.7 10.4 40 1-42 1-40 (165)
165 PRK08903 DnaA regulatory inact 96.5 0.0051 1.1E-07 58.8 6.0 34 2-37 45-78 (227)
166 PRK03992 proteasome-activating 96.5 0.0084 1.8E-07 62.1 8.0 23 2-24 168-190 (389)
167 PHA00729 NTP-binding motif con 96.5 0.011 2.4E-07 55.3 7.7 22 2-23 20-41 (226)
168 PRK12597 F0F1 ATP synthase sub 96.4 0.018 3.8E-07 60.1 10.0 84 2-86 146-246 (461)
169 PF05673 DUF815: Protein of un 96.4 0.1 2.2E-06 49.1 14.0 92 2-119 55-155 (249)
170 KOG2739 Leucine-rich acidic nu 96.4 0.0016 3.5E-08 60.9 2.1 79 299-378 42-126 (260)
171 PF00448 SRP54: SRP54-type pro 96.4 0.018 3.9E-07 53.3 9.0 85 1-87 3-93 (196)
172 TIGR00635 ruvB Holliday juncti 96.4 0.013 2.8E-07 58.9 8.8 24 2-25 33-56 (305)
173 cd01393 recA_like RecA is a b 96.4 0.028 6E-07 53.7 10.6 86 1-87 21-124 (226)
174 PRK14722 flhF flagellar biosyn 96.4 0.016 3.4E-07 58.8 9.2 87 1-89 139-227 (374)
175 PRK07940 DNA polymerase III su 96.4 0.018 3.8E-07 59.4 9.6 22 2-23 39-60 (394)
176 PRK12727 flagellar biosynthesi 96.3 0.016 3.4E-07 60.9 8.9 87 1-89 352-440 (559)
177 TIGR03499 FlhF flagellar biosy 96.3 0.02 4.4E-07 56.4 9.4 83 1-86 196-281 (282)
178 cd01135 V_A-ATPase_B V/A-type 96.3 0.027 5.8E-07 54.3 9.8 87 2-88 72-177 (276)
179 TIGR02640 gas_vesic_GvpN gas v 96.3 0.017 3.8E-07 56.3 8.8 41 2-47 24-64 (262)
180 KOG0744 AAA+-type ATPase [Post 96.3 0.0073 1.6E-07 58.2 5.7 36 1-36 179-216 (423)
181 PF13238 AAA_18: AAA domain; P 96.3 0.0033 7.2E-08 53.9 3.3 22 2-23 1-22 (129)
182 PRK08972 fliI flagellum-specif 96.3 0.017 3.7E-07 59.4 8.7 82 2-87 165-262 (444)
183 cd03214 ABC_Iron-Siderophores_ 96.3 0.019 4.1E-07 52.5 8.3 114 1-118 27-161 (180)
184 cd01394 radB RadB. The archaea 96.3 0.016 3.5E-07 54.9 8.1 40 1-42 21-60 (218)
185 COG1373 Predicted ATPase (AAA+ 96.3 0.015 3.3E-07 60.2 8.5 96 1-119 39-135 (398)
186 PRK09280 F0F1 ATP synthase sub 96.3 0.031 6.8E-07 58.1 10.6 85 2-87 147-248 (463)
187 PF00485 PRK: Phosphoribulokin 96.3 0.0034 7.3E-08 58.3 3.3 26 1-26 1-26 (194)
188 PRK08927 fliI flagellum-specif 96.3 0.022 4.8E-07 58.9 9.4 82 2-87 161-258 (442)
189 TIGR02012 tigrfam_recA protein 96.3 0.02 4.4E-07 56.8 8.8 80 1-87 57-143 (321)
190 PRK08233 hypothetical protein; 96.2 0.01 2.2E-07 54.4 6.5 24 1-24 5-28 (182)
191 PRK00080 ruvB Holliday junctio 96.2 0.019 4.1E-07 58.2 8.9 24 2-25 54-77 (328)
192 cd02019 NK Nucleoside/nucleoti 96.2 0.0047 1E-07 46.3 3.3 23 1-23 1-23 (69)
193 COG0593 DnaA ATPase involved i 96.2 0.016 3.5E-07 59.1 8.1 98 2-115 116-218 (408)
194 cd00983 recA RecA is a bacter 96.2 0.023 4.9E-07 56.5 8.8 80 1-87 57-143 (325)
195 PRK09354 recA recombinase A; P 96.2 0.024 5.3E-07 56.8 9.0 80 1-87 62-148 (349)
196 COG3640 CooC CO dehydrogenase 96.1 0.011 2.3E-07 54.6 5.7 44 1-45 2-45 (255)
197 KOG2227 Pre-initiation complex 96.1 0.035 7.7E-07 56.4 9.7 88 2-89 178-268 (529)
198 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.1 0.015 3.2E-07 51.1 6.4 99 1-118 28-130 (144)
199 PRK14955 DNA polymerase III su 96.1 0.021 4.6E-07 59.4 8.6 112 2-113 41-165 (397)
200 CHL00176 ftsH cell division pr 96.1 0.018 4E-07 63.0 8.5 24 2-25 219-242 (638)
201 TIGR02639 ClpA ATP-dependent C 96.1 0.016 3.4E-07 65.4 8.3 88 2-99 487-577 (731)
202 PRK04301 radA DNA repair and r 96.1 0.028 6.1E-07 56.6 9.3 54 1-55 104-161 (317)
203 TIGR01359 UMP_CMP_kin_fam UMP- 96.1 0.04 8.6E-07 50.6 9.6 23 1-23 1-23 (183)
204 PRK05896 DNA polymerase III su 96.1 0.023 5.1E-07 61.0 8.9 23 2-24 41-63 (605)
205 PRK14952 DNA polymerase III su 96.1 0.14 3E-06 55.6 14.9 23 2-24 38-60 (584)
206 cd01131 PilT Pilus retraction 96.1 0.013 2.8E-07 54.5 6.3 109 1-118 3-112 (198)
207 TIGR03305 alt_F1F0_F1_bet alte 96.1 0.036 7.7E-07 57.5 9.9 85 2-87 141-242 (449)
208 cd03115 SRP The signal recogni 96.1 0.049 1.1E-06 49.5 10.0 26 1-26 2-27 (173)
209 COG0194 Gmk Guanylate kinase [ 96.1 0.019 4.1E-07 51.2 6.8 107 1-118 6-128 (191)
210 cd03247 ABCC_cytochrome_bd The 96.1 0.019 4.2E-07 52.4 7.2 112 1-118 30-160 (178)
211 PF13177 DNA_pol3_delta2: DNA 96.1 0.056 1.2E-06 48.4 10.0 101 2-118 22-145 (162)
212 PRK07764 DNA polymerase III su 96.0 0.11 2.3E-06 58.9 14.2 40 76-115 119-160 (824)
213 PTZ00301 uridine kinase; Provi 96.0 0.0045 9.6E-08 57.9 2.9 24 1-24 5-28 (210)
214 PRK06002 fliI flagellum-specif 96.0 0.025 5.4E-07 58.6 8.4 84 1-87 167-264 (450)
215 PLN00020 ribulose bisphosphate 96.0 0.02 4.4E-07 57.1 7.4 26 1-26 150-175 (413)
216 PRK14953 DNA polymerase III su 96.0 0.17 3.6E-06 53.9 14.9 21 3-23 42-62 (486)
217 cd00544 CobU Adenosylcobinamid 96.0 0.028 6E-07 50.6 7.7 80 1-86 1-82 (169)
218 PRK08149 ATP synthase SpaL; Va 96.0 0.03 6.5E-07 57.8 8.9 82 2-87 154-251 (428)
219 cd03216 ABC_Carb_Monos_I This 96.0 0.0093 2E-07 53.6 4.6 110 1-117 28-144 (163)
220 PRK14959 DNA polymerase III su 96.0 0.032 6.9E-07 60.3 9.2 130 2-139 41-190 (624)
221 cd01132 F1_ATPase_alpha F1 ATP 96.0 0.04 8.7E-07 53.1 9.0 93 2-98 72-183 (274)
222 cd02029 PRK_like Phosphoribulo 96.0 0.039 8.4E-07 52.8 8.7 50 1-52 1-52 (277)
223 TIGR03689 pup_AAA proteasome A 95.9 0.013 2.9E-07 61.9 6.2 24 2-25 219-242 (512)
224 cd02025 PanK Pantothenate kina 95.9 0.034 7.4E-07 52.6 8.4 25 1-25 1-25 (220)
225 TIGR00235 udk uridine kinase. 95.9 0.0052 1.1E-07 57.7 2.8 24 1-24 8-31 (207)
226 cd03223 ABCD_peroxisomal_ALDP 95.9 0.036 7.8E-07 49.9 8.1 110 1-118 29-151 (166)
227 TIGR03346 chaperone_ClpB ATP-d 95.9 0.021 4.6E-07 65.5 8.1 91 2-99 598-691 (852)
228 cd02027 APSK Adenosine 5'-phos 95.9 0.067 1.4E-06 47.2 9.5 25 1-25 1-25 (149)
229 TIGR02397 dnaX_nterm DNA polym 95.9 0.05 1.1E-06 56.0 10.1 98 2-116 39-158 (355)
230 TIGR02238 recomb_DMC1 meiotic 95.9 0.036 7.7E-07 55.3 8.6 55 1-56 98-156 (313)
231 TIGR02858 spore_III_AA stage I 95.9 0.036 7.8E-07 53.9 8.4 110 2-117 114-231 (270)
232 PRK06936 type III secretion sy 95.9 0.038 8.3E-07 57.1 8.9 82 2-87 165-262 (439)
233 PRK05480 uridine/cytidine kina 95.8 0.0062 1.3E-07 57.4 2.9 23 1-23 8-30 (209)
234 PRK09111 DNA polymerase III su 95.8 0.039 8.5E-07 60.0 9.3 23 2-24 49-71 (598)
235 KOG1969 DNA replication checkp 95.8 0.022 4.7E-07 61.0 7.0 70 1-89 328-399 (877)
236 PRK14950 DNA polymerase III su 95.8 0.051 1.1E-06 59.6 10.2 131 2-139 41-191 (585)
237 COG0470 HolB ATPase involved i 95.8 0.047 1E-06 55.3 9.5 100 2-116 27-150 (325)
238 PRK14954 DNA polymerase III su 95.8 0.05 1.1E-06 59.4 9.9 23 2-24 41-63 (620)
239 COG0572 Udk Uridine kinase [Nu 95.7 0.0075 1.6E-07 55.6 2.9 26 1-26 10-35 (218)
240 PRK14971 DNA polymerase III su 95.7 0.25 5.4E-06 54.3 15.1 121 2-139 42-192 (614)
241 PRK14721 flhF flagellar biosyn 95.7 0.068 1.5E-06 55.2 10.1 56 1-56 193-249 (420)
242 cd02023 UMPK Uridine monophosp 95.7 0.0081 1.7E-07 56.0 3.2 23 1-23 1-23 (198)
243 COG3903 Predicted ATPase [Gene 95.7 0.0043 9.4E-08 62.1 1.4 112 2-118 17-130 (414)
244 PRK10865 protein disaggregatio 95.7 0.03 6.5E-07 64.0 8.2 91 2-99 601-694 (857)
245 COG2884 FtsE Predicted ATPase 95.7 0.049 1.1E-06 48.7 7.6 51 69-119 147-201 (223)
246 PRK14974 cell division protein 95.7 0.1 2.2E-06 52.5 10.9 86 1-89 142-234 (336)
247 PF00560 LRR_1: Leucine Rich R 95.7 0.0059 1.3E-07 33.9 1.3 21 301-321 1-21 (22)
248 PRK07471 DNA polymerase III su 95.7 0.0071 1.5E-07 61.7 2.8 51 67-117 126-183 (365)
249 PF03205 MobB: Molybdopterin g 95.7 0.018 4E-07 50.0 5.0 38 1-39 2-39 (140)
250 PRK14970 DNA polymerase III su 95.7 0.064 1.4E-06 55.4 9.9 23 2-24 42-64 (367)
251 PRK06995 flhF flagellar biosyn 95.7 0.059 1.3E-06 56.6 9.5 85 1-87 258-344 (484)
252 cd03222 ABC_RNaseL_inhibitor T 95.7 0.024 5.2E-07 51.5 5.9 97 1-118 27-135 (177)
253 TIGR01041 ATP_syn_B_arch ATP s 95.7 0.067 1.4E-06 55.9 9.8 86 2-87 144-248 (458)
254 COG1428 Deoxynucleoside kinase 95.6 0.0079 1.7E-07 54.7 2.7 24 1-24 6-29 (216)
255 cd02024 NRK1 Nicotinamide ribo 95.6 0.0097 2.1E-07 54.4 3.3 23 1-23 1-23 (187)
256 PF08423 Rad51: Rad51; InterP 95.6 0.094 2E-06 50.8 10.3 53 2-55 41-97 (256)
257 PRK12726 flagellar biosynthesi 95.6 0.063 1.4E-06 54.1 9.1 86 1-89 208-297 (407)
258 PRK11889 flhF flagellar biosyn 95.6 0.076 1.6E-06 53.8 9.7 86 1-89 243-332 (436)
259 KOG3347 Predicted nucleotide k 95.6 0.023 4.9E-07 48.4 5.1 69 2-79 10-78 (176)
260 PTZ00185 ATPase alpha subunit; 95.6 0.094 2E-06 54.8 10.5 86 2-88 192-300 (574)
261 PRK07133 DNA polymerase III su 95.6 0.23 5E-06 54.8 14.1 64 76-139 117-189 (725)
262 TIGR00176 mobB molybdopterin-g 95.6 0.02 4.4E-07 50.7 5.0 35 1-36 1-35 (155)
263 PF01583 APS_kinase: Adenylyls 95.6 0.018 4E-07 50.5 4.7 34 1-36 4-37 (156)
264 PRK06762 hypothetical protein; 95.6 0.0092 2E-07 53.8 2.9 23 1-23 4-26 (166)
265 cd03246 ABCC_Protease_Secretio 95.6 0.026 5.7E-07 51.3 5.9 115 1-118 30-159 (173)
266 cd00267 ABC_ATPase ABC (ATP-bi 95.6 0.029 6.3E-07 50.0 6.1 110 1-118 27-143 (157)
267 TIGR00959 ffh signal recogniti 95.6 0.07 1.5E-06 55.5 9.6 87 1-88 101-193 (428)
268 PRK00279 adk adenylate kinase; 95.6 0.066 1.4E-06 50.6 8.8 23 2-24 3-25 (215)
269 TIGR01039 atpD ATP synthase, F 95.6 0.088 1.9E-06 54.7 10.1 85 2-87 146-247 (461)
270 TIGR03574 selen_PSTK L-seryl-t 95.5 0.036 7.9E-07 53.7 7.2 25 1-25 1-25 (249)
271 PRK06696 uridine kinase; Valid 95.5 0.0089 1.9E-07 56.9 2.8 26 1-26 24-49 (223)
272 PRK05922 type III secretion sy 95.5 0.07 1.5E-06 55.2 9.3 82 2-87 160-257 (434)
273 cd03228 ABCC_MRP_Like The MRP 95.5 0.042 9.1E-07 49.8 7.0 111 1-118 30-158 (171)
274 PF07728 AAA_5: AAA domain (dy 95.5 0.039 8.5E-07 48.0 6.5 75 2-89 2-77 (139)
275 PRK05703 flhF flagellar biosyn 95.5 0.064 1.4E-06 56.0 9.1 86 1-88 223-310 (424)
276 PRK03839 putative kinase; Prov 95.5 0.011 2.3E-07 54.3 3.0 25 1-25 2-26 (180)
277 PRK12723 flagellar biosynthesi 95.5 0.11 2.4E-06 53.3 10.5 86 1-89 176-266 (388)
278 TIGR03324 alt_F1F0_F1_al alter 95.5 0.082 1.8E-06 55.4 9.7 83 2-88 165-265 (497)
279 PLN03187 meiotic recombination 95.5 0.079 1.7E-06 53.4 9.3 54 2-56 129-186 (344)
280 COG4608 AppF ABC-type oligopep 95.5 0.056 1.2E-06 51.5 7.7 115 1-119 41-174 (268)
281 TIGR03498 FliI_clade3 flagella 95.4 0.045 9.8E-07 56.6 7.7 84 1-87 142-240 (418)
282 PF00560 LRR_1: Leucine Rich R 95.4 0.0057 1.2E-07 34.0 0.7 21 346-366 1-21 (22)
283 TIGR02236 recomb_radA DNA repa 95.4 0.076 1.6E-06 53.4 9.3 54 1-55 97-154 (310)
284 CHL00095 clpC Clp protease ATP 95.4 0.034 7.3E-07 63.6 7.4 107 2-115 542-662 (821)
285 PF13671 AAA_33: AAA domain; P 95.4 0.012 2.5E-07 51.6 2.9 24 1-24 1-24 (143)
286 cd01136 ATPase_flagellum-secre 95.4 0.075 1.6E-06 53.0 8.9 83 1-87 71-169 (326)
287 cd03281 ABC_MSH5_euk MutS5 hom 95.4 0.022 4.7E-07 53.6 4.9 112 1-119 31-158 (213)
288 PRK00771 signal recognition pa 95.4 0.083 1.8E-06 55.1 9.5 86 1-89 97-187 (437)
289 PRK06547 hypothetical protein; 95.4 0.012 2.5E-07 53.2 2.9 24 1-24 17-40 (172)
290 PTZ00454 26S protease regulato 95.4 0.034 7.3E-07 57.5 6.6 23 2-24 182-204 (398)
291 PRK14723 flhF flagellar biosyn 95.4 0.078 1.7E-06 58.7 9.5 84 1-87 187-273 (767)
292 cd02028 UMPK_like Uridine mono 95.4 0.013 2.9E-07 53.4 3.2 25 1-25 1-25 (179)
293 PRK09099 type III secretion sy 95.4 0.057 1.2E-06 56.1 8.1 84 1-87 165-263 (441)
294 TIGR01040 V-ATPase_V1_B V-type 95.3 0.1 2.3E-06 53.9 9.8 86 2-87 144-257 (466)
295 PRK08451 DNA polymerase III su 95.3 0.52 1.1E-05 50.4 15.3 64 76-139 116-188 (535)
296 PRK05688 fliI flagellum-specif 95.3 0.073 1.6E-06 55.3 8.7 83 1-87 170-268 (451)
297 PRK07594 type III secretion sy 95.3 0.056 1.2E-06 56.0 7.8 83 1-87 157-255 (433)
298 PF00154 RecA: recA bacterial 95.3 0.15 3.2E-06 50.7 10.5 82 1-89 55-143 (322)
299 cd01134 V_A-ATPase_A V/A-type 95.3 0.071 1.5E-06 53.1 8.2 81 2-86 160-263 (369)
300 PRK10867 signal recognition pa 95.3 0.1 2.2E-06 54.4 9.7 85 1-87 102-193 (433)
301 PF00910 RNA_helicase: RNA hel 95.3 0.015 3.2E-07 48.0 2.9 24 2-25 1-24 (107)
302 PRK12678 transcription termina 95.3 0.071 1.5E-06 56.3 8.3 85 2-87 419-513 (672)
303 CHL00195 ycf46 Ycf46; Provisio 95.3 0.074 1.6E-06 56.4 8.7 24 2-25 262-285 (489)
304 TIGR02239 recomb_RAD51 DNA rep 95.2 0.094 2E-06 52.5 9.1 54 1-55 98-155 (316)
305 PRK08533 flagellar accessory p 95.2 0.11 2.3E-06 49.6 9.1 46 1-50 26-71 (230)
306 PF08433 KTI12: Chromatin asso 95.2 0.038 8.2E-07 53.8 6.0 25 1-25 3-27 (270)
307 PF07693 KAP_NTPase: KAP famil 95.2 0.12 2.5E-06 52.5 10.0 26 1-26 22-47 (325)
308 PRK07667 uridine kinase; Provi 95.2 0.017 3.7E-07 53.5 3.4 25 1-25 19-43 (193)
309 cd02021 GntK Gluconate kinase 95.2 0.017 3.6E-07 51.1 3.2 23 1-23 1-23 (150)
310 PRK00625 shikimate kinase; Pro 95.2 0.017 3.6E-07 52.3 3.2 23 2-24 3-25 (173)
311 TIGR03345 VI_ClpV1 type VI sec 95.2 0.055 1.2E-06 61.8 8.0 24 1-24 598-621 (852)
312 cd03283 ABC_MutS-like MutS-lik 95.2 0.032 6.8E-07 51.9 5.1 23 1-23 27-49 (199)
313 PRK06217 hypothetical protein; 95.1 0.017 3.6E-07 53.1 3.2 23 2-24 4-26 (183)
314 PRK14948 DNA polymerase III su 95.1 0.12 2.7E-06 56.6 10.3 132 3-139 42-192 (620)
315 PLN03186 DNA repair protein RA 95.1 0.11 2.5E-06 52.3 9.3 55 1-56 125-183 (342)
316 PRK04196 V-type ATP synthase s 95.1 0.11 2.4E-06 54.4 9.4 85 2-87 146-250 (460)
317 TIGR01241 FtsH_fam ATP-depende 95.1 0.038 8.3E-07 59.4 6.3 24 2-25 91-114 (495)
318 cd02020 CMPK Cytidine monophos 95.1 0.019 4.1E-07 50.5 3.3 24 1-24 1-24 (147)
319 TIGR00602 rad24 checkpoint pro 95.1 0.024 5.2E-07 61.7 4.7 24 1-24 112-135 (637)
320 TIGR03496 FliI_clade1 flagella 95.1 0.074 1.6E-06 55.0 8.0 83 1-87 139-237 (411)
321 PRK05707 DNA polymerase III su 95.1 0.16 3.5E-06 51.1 10.2 22 2-23 25-46 (328)
322 TIGR03877 thermo_KaiC_1 KaiC d 95.1 0.16 3.4E-06 48.8 9.9 45 1-49 23-67 (237)
323 PRK04040 adenylate kinase; Pro 95.1 0.016 3.5E-07 53.2 2.9 24 1-24 4-27 (188)
324 PRK12724 flagellar biosynthesi 95.1 0.089 1.9E-06 54.0 8.4 24 1-24 225-248 (432)
325 COG4618 ArpD ABC-type protease 95.1 0.066 1.4E-06 55.2 7.3 22 1-22 364-385 (580)
326 cd00561 CobA_CobO_BtuR ATP:cor 95.1 0.082 1.8E-06 46.7 7.1 112 2-116 5-139 (159)
327 KOG0733 Nuclear AAA ATPase (VC 95.1 0.049 1.1E-06 57.2 6.4 68 2-89 226-294 (802)
328 CHL00060 atpB ATP synthase CF1 95.1 0.11 2.3E-06 54.5 9.0 86 2-88 164-273 (494)
329 COG2812 DnaX DNA polymerase II 95.1 0.55 1.2E-05 49.7 14.3 178 4-190 43-240 (515)
330 COG0468 RecA RecA/RadA recombi 95.1 0.14 3.1E-06 49.7 9.4 84 1-87 62-151 (279)
331 PRK10751 molybdopterin-guanine 95.0 0.02 4.3E-07 51.4 3.2 26 1-26 8-33 (173)
332 TIGR00064 ftsY signal recognit 95.0 0.15 3.2E-06 49.9 9.6 86 1-89 74-166 (272)
333 TIGR02322 phosphon_PhnN phosph 95.0 0.017 3.6E-07 52.9 2.8 24 1-24 3-26 (179)
334 PRK06793 fliI flagellum-specif 95.0 0.076 1.7E-06 55.0 7.7 113 2-117 159-288 (432)
335 PTZ00035 Rad51 protein; Provis 95.0 0.19 4.1E-06 50.8 10.5 55 1-56 120-178 (337)
336 PRK13695 putative NTPase; Prov 95.0 0.036 7.8E-07 50.4 4.8 34 2-36 3-36 (174)
337 COG4167 SapF ABC-type antimicr 95.0 0.057 1.2E-06 47.7 5.6 74 2-75 42-134 (267)
338 TIGR01360 aden_kin_iso1 adenyl 94.9 0.019 4.1E-07 53.0 3.0 23 1-23 5-27 (188)
339 KOG1532 GTPase XAB1, interacts 94.9 0.019 4.1E-07 54.0 2.8 26 1-26 21-46 (366)
340 PRK06067 flagellar accessory p 94.9 0.15 3.4E-06 48.8 9.3 45 1-49 27-71 (234)
341 PRK07196 fliI flagellum-specif 94.9 0.069 1.5E-06 55.3 7.1 84 1-88 157-256 (434)
342 PRK15453 phosphoribulokinase; 94.9 0.15 3.2E-06 49.4 8.8 24 1-24 7-30 (290)
343 TIGR03575 selen_PSTK_euk L-ser 94.9 0.18 3.8E-06 50.7 9.7 25 1-25 1-25 (340)
344 PF07724 AAA_2: AAA domain (Cd 94.9 0.017 3.8E-07 52.0 2.4 40 2-42 6-45 (171)
345 COG0542 clpA ATP-binding subun 94.9 0.08 1.7E-06 58.3 7.8 103 2-113 524-642 (786)
346 PHA02244 ATPase-like protein 94.9 0.13 2.8E-06 51.8 8.6 23 2-24 122-144 (383)
347 cd01125 repA Hexameric Replica 94.8 0.18 3.9E-06 48.5 9.6 118 1-118 3-162 (239)
348 PRK02118 V-type ATP synthase s 94.8 0.17 3.6E-06 52.3 9.7 83 2-88 143-242 (436)
349 cd00071 GMPK Guanosine monopho 94.8 0.023 5E-07 49.3 3.0 23 1-23 1-23 (137)
350 PRK07721 fliI flagellum-specif 94.8 0.11 2.3E-06 54.4 8.3 84 1-87 160-258 (438)
351 PRK00889 adenylylsulfate kinas 94.8 0.025 5.5E-07 51.5 3.4 26 1-26 6-31 (175)
352 cd01122 GP4d_helicase GP4d_hel 94.8 0.29 6.3E-06 48.1 11.2 50 1-53 32-81 (271)
353 PRK14965 DNA polymerase III su 94.8 0.14 3E-06 56.0 9.5 23 2-24 41-63 (576)
354 PTZ00361 26 proteosome regulat 94.8 0.03 6.4E-07 58.4 4.2 24 2-25 220-243 (438)
355 COG1157 FliI Flagellar biosynt 94.8 0.16 3.4E-06 51.3 9.0 81 2-86 166-262 (441)
356 PRK13949 shikimate kinase; Pro 94.8 0.025 5.4E-07 51.1 3.2 23 2-24 4-26 (169)
357 CHL00059 atpA ATP synthase CF1 94.8 0.15 3.1E-06 53.4 9.1 83 2-88 144-244 (485)
358 TIGR00962 atpA proton transloc 94.8 0.15 3.1E-06 54.1 9.2 83 2-88 164-264 (501)
359 PRK09270 nucleoside triphospha 94.7 0.034 7.3E-07 53.2 4.2 26 1-26 35-60 (229)
360 TIGR01287 nifH nitrogenase iro 94.7 0.048 1E-06 53.8 5.4 40 1-42 2-41 (275)
361 COG1763 MobB Molybdopterin-gua 94.7 0.026 5.6E-07 49.8 3.0 28 1-28 4-31 (161)
362 COG1703 ArgK Putative periplas 94.7 0.037 8.1E-07 53.1 4.2 47 1-47 53-99 (323)
363 PRK09281 F0F1 ATP synthase sub 94.7 0.15 3.4E-06 53.9 9.2 83 2-88 165-265 (502)
364 KOG3864 Uncharacterized conser 94.7 0.007 1.5E-07 54.4 -0.6 67 488-562 123-189 (221)
365 TIGR00041 DTMP_kinase thymidyl 94.7 0.24 5.1E-06 45.9 9.7 26 1-26 5-30 (195)
366 PTZ00088 adenylate kinase 1; P 94.7 0.1 2.2E-06 49.5 7.2 23 2-24 9-31 (229)
367 PF13604 AAA_30: AAA domain; P 94.7 0.039 8.4E-07 51.2 4.2 25 2-26 21-45 (196)
368 TIGR00554 panK_bact pantothena 94.7 0.06 1.3E-06 52.8 5.7 24 1-24 64-87 (290)
369 PF03969 AFG1_ATPase: AFG1-lik 94.7 0.044 9.4E-07 55.8 4.9 101 2-118 65-170 (362)
370 PRK00131 aroK shikimate kinase 94.7 0.026 5.6E-07 51.3 3.1 24 1-24 6-29 (175)
371 COG1102 Cmk Cytidylate kinase 94.7 0.024 5.2E-07 49.1 2.6 43 1-56 2-44 (179)
372 TIGR03881 KaiC_arch_4 KaiC dom 94.7 0.27 5.9E-06 46.9 10.2 38 1-40 22-59 (229)
373 TIGR03497 FliI_clade2 flagella 94.6 0.13 2.9E-06 53.2 8.4 82 2-87 140-237 (413)
374 TIGR03263 guanyl_kin guanylate 94.6 0.022 4.7E-07 52.2 2.5 22 1-22 3-24 (180)
375 PRK13947 shikimate kinase; Pro 94.6 0.028 6.1E-07 50.9 3.2 24 2-25 4-27 (171)
376 PRK14532 adenylate kinase; Pro 94.6 0.16 3.5E-06 46.8 8.3 22 2-23 3-24 (188)
377 cd01983 Fer4_NifH The Fer4_Nif 94.6 0.041 8.9E-07 44.1 3.8 25 1-25 1-25 (99)
378 TIGR00455 apsK adenylylsulfate 94.6 0.16 3.5E-06 46.6 8.2 25 1-25 20-44 (184)
379 PRK03846 adenylylsulfate kinas 94.6 0.038 8.2E-07 51.5 4.0 25 1-25 26-50 (198)
380 COG0563 Adk Adenylate kinase a 94.6 0.03 6.4E-07 50.8 3.2 23 2-24 3-25 (178)
381 PF13481 AAA_25: AAA domain; P 94.6 0.2 4.3E-06 46.4 8.9 40 1-40 34-81 (193)
382 cd00464 SK Shikimate kinase (S 94.5 0.031 6.7E-07 49.6 3.2 23 2-24 2-24 (154)
383 COG1124 DppF ABC-type dipeptid 94.5 0.025 5.5E-07 52.6 2.6 22 1-22 35-56 (252)
384 PRK04328 hypothetical protein; 94.5 0.2 4.3E-06 48.5 9.0 38 1-40 25-62 (249)
385 cd01672 TMPK Thymidine monopho 94.5 0.096 2.1E-06 48.7 6.7 25 1-25 2-26 (200)
386 cd00227 CPT Chloramphenicol (C 94.5 0.029 6.2E-07 51.1 3.0 24 1-24 4-27 (175)
387 PF03029 ATP_bind_1: Conserved 94.5 0.031 6.8E-07 53.4 3.3 31 4-36 1-31 (238)
388 PRK06820 type III secretion sy 94.5 0.23 4.9E-06 51.7 9.7 82 2-87 166-263 (440)
389 PF03308 ArgK: ArgK protein; 94.5 0.04 8.7E-07 52.1 3.8 46 1-46 31-76 (266)
390 PRK11034 clpA ATP-dependent Cl 94.5 0.08 1.7E-06 59.3 6.8 88 2-99 491-581 (758)
391 PRK05057 aroK shikimate kinase 94.5 0.032 7E-07 50.5 3.2 23 2-24 7-29 (172)
392 COG0003 ArsA Predicted ATPase 94.4 0.067 1.5E-06 53.2 5.5 46 1-48 4-49 (322)
393 TIGR01425 SRP54_euk signal rec 94.4 0.18 4E-06 52.2 8.9 35 1-37 102-136 (429)
394 PLN02796 D-glycerate 3-kinase 94.4 0.043 9.4E-07 54.7 4.1 26 1-26 102-127 (347)
395 PRK00300 gmk guanylate kinase; 94.4 0.029 6.3E-07 52.6 2.9 23 1-23 7-29 (205)
396 PRK10078 ribose 1,5-bisphospho 94.4 0.027 5.8E-07 51.9 2.5 23 1-23 4-26 (186)
397 PRK08472 fliI flagellum-specif 94.4 0.14 3.1E-06 53.0 8.0 83 1-87 159-256 (434)
398 cd03114 ArgK-like The function 94.4 0.057 1.2E-06 47.5 4.5 26 1-26 1-26 (148)
399 KOG0739 AAA+-type ATPase [Post 94.4 0.13 2.9E-06 49.1 7.0 67 2-88 169-236 (439)
400 PF00142 Fer4_NifH: 4Fe-4S iro 94.3 0.083 1.8E-06 50.2 5.6 39 2-42 3-41 (273)
401 PRK09112 DNA polymerase III su 94.3 0.21 4.5E-06 50.8 9.0 23 2-24 48-70 (351)
402 PRK05563 DNA polymerase III su 94.3 1.4 3.1E-05 48.0 15.9 64 76-139 118-190 (559)
403 cd01428 ADK Adenylate kinase ( 94.3 0.32 6.8E-06 45.0 9.6 23 1-23 1-23 (194)
404 PF12775 AAA_7: P-loop contain 94.3 0.03 6.6E-07 54.7 2.8 76 2-89 36-112 (272)
405 TIGR01313 therm_gnt_kin carboh 94.3 0.031 6.8E-07 50.2 2.7 22 2-23 1-22 (163)
406 cd02040 NifH NifH gene encodes 94.3 0.071 1.5E-06 52.4 5.5 41 1-43 3-43 (270)
407 PF08477 Miro: Miro-like prote 94.3 0.04 8.6E-07 46.3 3.2 24 2-25 2-25 (119)
408 PRK13975 thymidylate kinase; P 94.3 0.032 7E-07 51.8 2.8 25 1-25 4-28 (196)
409 TIGR01026 fliI_yscN ATPase Fli 94.3 0.16 3.4E-06 53.1 8.1 83 1-87 165-263 (440)
410 COG1222 RPT1 ATP-dependent 26S 94.2 0.095 2E-06 51.7 5.9 98 2-119 188-304 (406)
411 PRK06305 DNA polymerase III su 94.2 0.24 5.1E-06 52.4 9.4 22 2-23 42-63 (451)
412 cd02022 DPCK Dephospho-coenzym 94.2 0.039 8.5E-07 50.4 3.2 21 1-21 1-21 (179)
413 cd01121 Sms Sms (bacterial rad 94.2 0.1 2.3E-06 53.3 6.5 82 1-87 84-168 (372)
414 PRK07960 fliI flagellum-specif 94.2 0.13 2.8E-06 53.3 7.1 84 1-88 177-276 (455)
415 KOG2228 Origin recognition com 94.2 0.21 4.6E-06 48.8 8.0 112 2-115 52-182 (408)
416 KOG3864 Uncharacterized conser 94.1 0.007 1.5E-07 54.4 -1.8 73 511-589 118-190 (221)
417 PRK08058 DNA polymerase III su 94.1 0.25 5.5E-06 49.9 9.1 63 76-138 109-180 (329)
418 PRK13946 shikimate kinase; Pro 94.1 0.042 9.1E-07 50.5 3.2 23 2-24 13-35 (184)
419 KOG0734 AAA+-type ATPase conta 94.1 0.079 1.7E-06 54.8 5.3 68 2-89 340-408 (752)
420 PRK13343 F0F1 ATP synthase sub 94.1 0.22 4.7E-06 52.6 8.7 83 2-88 165-265 (502)
421 PRK06647 DNA polymerase III su 94.1 0.3 6.5E-06 53.0 10.1 23 2-24 41-63 (563)
422 PRK04182 cytidylate kinase; Pr 94.1 0.039 8.5E-07 50.4 3.0 24 1-24 2-25 (180)
423 PRK04132 replication factor C 94.1 1.2 2.6E-05 50.4 14.9 164 7-188 574-748 (846)
424 cd00820 PEPCK_HprK Phosphoenol 94.1 0.036 7.8E-07 45.2 2.3 20 1-20 17-36 (107)
425 TIGR00150 HI0065_YjeE ATPase, 94.1 0.041 9E-07 46.9 2.8 25 1-25 24-48 (133)
426 TIGR02546 III_secr_ATP type II 94.1 0.22 4.8E-06 51.9 8.7 82 2-87 148-245 (422)
427 KOG0989 Replication factor C, 94.0 0.14 3.1E-06 49.3 6.5 105 2-118 60-172 (346)
428 PRK09825 idnK D-gluconate kina 94.0 0.04 8.7E-07 50.1 2.8 25 1-25 5-29 (176)
429 PF02374 ArsA_ATPase: Anion-tr 94.0 0.087 1.9E-06 52.5 5.4 45 1-47 3-47 (305)
430 TIGR01351 adk adenylate kinase 94.0 0.24 5.3E-06 46.5 8.2 22 2-23 2-23 (210)
431 cd02026 PRK Phosphoribulokinas 94.0 0.044 9.5E-07 53.6 3.2 24 1-24 1-24 (273)
432 smart00534 MUTSac ATPase domai 94.0 0.042 9.2E-07 50.5 2.9 22 1-22 1-22 (185)
433 PLN03046 D-glycerate 3-kinase; 94.0 0.057 1.2E-06 55.0 4.0 25 1-25 214-238 (460)
434 PRK13230 nitrogenase reductase 94.0 0.086 1.9E-06 52.1 5.3 38 1-40 3-40 (279)
435 COG0237 CoaE Dephospho-CoA kin 94.0 0.039 8.5E-07 51.0 2.6 21 1-21 4-24 (201)
436 PF13504 LRR_7: Leucine rich r 93.9 0.042 9.2E-07 28.2 1.6 16 301-316 2-17 (17)
437 cd02034 CooC The accessory pro 93.9 0.065 1.4E-06 44.8 3.7 36 2-39 2-37 (116)
438 PRK09519 recA DNA recombinatio 93.9 0.25 5.5E-06 54.9 9.2 79 2-87 63-148 (790)
439 PRK12339 2-phosphoglycerate ki 93.9 0.044 9.5E-07 50.7 2.9 23 1-23 5-27 (197)
440 TIGR02173 cyt_kin_arch cytidyl 93.9 0.045 9.8E-07 49.5 3.0 23 1-23 2-24 (171)
441 PF00005 ABC_tran: ABC transpo 93.9 0.035 7.6E-07 48.1 2.1 24 1-24 13-36 (137)
442 PRK14530 adenylate kinase; Pro 93.9 0.049 1.1E-06 51.5 3.2 24 1-24 5-28 (215)
443 CHL00095 clpC Clp protease ATP 93.8 0.19 4.2E-06 57.5 8.5 74 2-87 203-281 (821)
444 cd02117 NifH_like This family 93.8 0.056 1.2E-06 51.0 3.5 26 1-26 2-27 (212)
445 PRK05800 cobU adenosylcobinami 93.8 0.14 3.1E-06 46.1 6.0 79 1-86 3-85 (170)
446 COG1936 Predicted nucleotide k 93.8 0.045 9.7E-07 48.2 2.5 20 1-20 2-21 (180)
447 TIGR03878 thermo_KaiC_2 KaiC d 93.8 0.33 7.2E-06 47.2 8.9 37 1-39 38-74 (259)
448 PRK10733 hflB ATP-dependent me 93.8 0.14 3.1E-06 56.7 7.1 24 2-25 188-211 (644)
449 COG0703 AroK Shikimate kinase 93.8 0.054 1.2E-06 48.1 3.0 25 2-26 5-29 (172)
450 cd03116 MobB Molybdenum is an 93.8 0.075 1.6E-06 47.2 4.0 26 1-26 3-28 (159)
451 cd03287 ABC_MSH3_euk MutS3 hom 93.8 0.31 6.6E-06 46.1 8.3 112 1-118 33-157 (222)
452 COG4240 Predicted kinase [Gene 93.8 0.3 6.5E-06 45.0 7.7 53 1-54 52-104 (300)
453 PRK05439 pantothenate kinase; 93.7 0.045 9.7E-07 54.2 2.7 24 1-24 88-111 (311)
454 cd03227 ABC_Class2 ABC-type Cl 93.7 0.17 3.8E-06 45.2 6.4 42 77-118 99-144 (162)
455 KOG0729 26S proteasome regulat 93.7 0.079 1.7E-06 49.7 4.1 97 2-118 214-329 (435)
456 COG1100 GTPase SAR1 and relate 93.7 0.041 8.9E-07 52.1 2.5 24 2-25 8-31 (219)
457 PF13245 AAA_19: Part of AAA d 93.7 0.18 3.9E-06 38.5 5.4 23 2-24 13-36 (76)
458 KOG0741 AAA+-type ATPase [Post 93.7 0.13 2.9E-06 53.1 6.0 70 2-93 541-614 (744)
459 PF10662 PduV-EutP: Ethanolami 93.7 0.051 1.1E-06 46.8 2.7 22 2-23 4-25 (143)
460 COG0466 Lon ATP-dependent Lon 93.7 0.14 3.1E-06 55.1 6.4 78 1-89 352-429 (782)
461 PF03266 NTPase_1: NTPase; In 93.7 0.068 1.5E-06 48.1 3.6 24 2-25 2-25 (168)
462 PRK13768 GTPase; Provisional 93.7 0.058 1.3E-06 52.3 3.3 35 1-37 4-38 (253)
463 cd01124 KaiC KaiC is a circadi 93.6 0.12 2.5E-06 47.6 5.3 38 1-40 1-38 (187)
464 cd02032 Bchl_like This family 93.6 0.06 1.3E-06 52.8 3.5 26 1-26 2-27 (267)
465 cd03243 ABC_MutS_homologs The 93.6 0.036 7.8E-07 51.8 1.8 22 1-22 31-52 (202)
466 PRK08699 DNA polymerase III su 93.6 0.048 1E-06 54.8 2.8 22 2-23 24-45 (325)
467 COG0529 CysC Adenylylsulfate k 93.6 0.067 1.5E-06 47.2 3.3 26 1-26 25-50 (197)
468 PF07726 AAA_3: ATPase family 93.6 0.045 9.8E-07 45.9 2.1 25 2-26 2-26 (131)
469 TIGR01281 DPOR_bchL light-inde 93.6 0.06 1.3E-06 52.9 3.4 25 1-25 2-26 (268)
470 KOG0733 Nuclear AAA ATPase (VC 93.6 0.13 2.8E-06 54.2 5.8 98 2-119 548-661 (802)
471 PRK04192 V-type ATP synthase s 93.6 0.25 5.3E-06 52.8 8.0 81 2-86 230-333 (586)
472 smart00763 AAA_PrkA PrkA AAA d 93.6 0.072 1.6E-06 53.5 3.9 34 1-34 80-118 (361)
473 PF13504 LRR_7: Leucine rich r 93.6 0.042 9.2E-07 28.2 1.2 16 346-361 2-17 (17)
474 cd03229 ABC_Class3 This class 93.6 0.05 1.1E-06 49.7 2.6 32 1-35 28-59 (178)
475 PLN02348 phosphoribulokinase 93.5 0.051 1.1E-06 55.1 2.8 24 1-24 51-74 (395)
476 COG2255 RuvB Holliday junction 93.5 0.061 1.3E-06 51.2 3.1 25 2-26 55-79 (332)
477 PF06745 KaiC: KaiC; InterPro 93.5 0.19 4.1E-06 47.9 6.7 39 1-41 21-60 (226)
478 PRK13232 nifH nitrogenase redu 93.5 0.063 1.4E-06 52.9 3.4 25 1-25 3-27 (273)
479 TIGR01243 CDC48 AAA family ATP 93.5 0.14 3.1E-06 57.9 6.7 67 2-87 215-281 (733)
480 PF13521 AAA_28: AAA domain; P 93.5 0.062 1.3E-06 48.2 3.1 21 2-22 2-22 (163)
481 cd03225 ABC_cobalt_CbiO_domain 93.5 0.05 1.1E-06 51.3 2.6 24 1-24 29-52 (211)
482 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.5 0.051 1.1E-06 51.5 2.5 32 1-35 32-63 (218)
483 TIGR01420 pilT_fam pilus retra 93.4 0.17 3.8E-06 51.5 6.5 109 1-118 124-233 (343)
484 PRK06761 hypothetical protein; 93.4 0.081 1.8E-06 51.6 3.9 34 1-35 5-38 (282)
485 PRK14493 putative bifunctional 93.4 0.082 1.8E-06 51.6 3.9 27 1-27 3-29 (274)
486 TIGR01166 cbiO cobalt transpor 93.4 0.053 1.2E-06 50.1 2.5 24 1-24 20-43 (190)
487 TIGR02639 ClpA ATP-dependent C 93.4 0.21 4.5E-06 56.6 7.6 74 2-87 206-284 (731)
488 cd03264 ABC_drug_resistance_li 93.4 0.061 1.3E-06 50.7 2.9 32 1-35 27-58 (211)
489 KOG0927 Predicted transporter 93.4 0.26 5.7E-06 51.3 7.5 116 2-119 419-570 (614)
490 PRK00698 tmk thymidylate kinas 93.4 0.18 4E-06 47.1 6.2 26 1-26 5-30 (205)
491 cd03265 ABC_DrrA DrrA is the A 93.4 0.06 1.3E-06 51.1 2.9 32 1-35 28-59 (220)
492 PRK10865 protein disaggregatio 93.4 0.23 5E-06 57.0 8.0 23 2-24 202-224 (857)
493 PRK14527 adenylate kinase; Pro 93.3 0.064 1.4E-06 49.6 3.0 24 1-24 8-31 (191)
494 PRK06731 flhF flagellar biosyn 93.3 0.81 1.8E-05 44.5 10.6 86 1-89 77-166 (270)
495 PRK03731 aroL shikimate kinase 93.3 0.071 1.5E-06 48.3 3.2 23 2-24 5-27 (171)
496 PF09848 DUF2075: Uncharacteri 93.3 0.26 5.7E-06 50.5 7.7 41 1-41 3-43 (352)
497 PRK13948 shikimate kinase; Pro 93.3 0.073 1.6E-06 48.5 3.2 23 2-24 13-35 (182)
498 COG1875 NYN ribonuclease and A 93.3 0.22 4.7E-06 49.3 6.5 134 1-139 247-409 (436)
499 PRK06871 DNA polymerase III su 93.3 0.094 2E-06 52.4 4.2 106 3-116 28-148 (325)
500 TIGR00960 3a0501s02 Type II (G 93.3 0.055 1.2E-06 51.2 2.5 32 1-35 31-62 (216)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-69 Score=590.38 Aligned_cols=557 Identities=27% Similarity=0.412 Sum_probs=421.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh-hcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCC---CHHHHHHHHHHHHcC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK-KEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKG---TESERARTLFDQLWK 76 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~l~~~l~~ 76 (629)
|+||+||||+||||||+.++|+.. ++.+||.++||+||+.|+..+++++|+..++.....+ ..++.+..|.+.|++
T Consensus 181 iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~ 260 (889)
T KOG4658|consen 181 IVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEG 260 (889)
T ss_pred EEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhcc
Confidence 689999999999999999999998 9999999999999999999999999999998754333 336788999999999
Q ss_pred CcEEEEEcCCCCCcchhhhhhccCCCCCCcEEEEeeccccccccccc---------------------------------
Q 047700 77 EKILIILDDIWANIDLETVGILFGGAHRGCKILLTPRYQNVLVSEMH--------------------------------- 123 (629)
Q Consensus 77 k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~~~--------------------------------- 123 (629)
|||+|||||||+..+|+.++.+++...+||+|++|||++.|+...|+
T Consensus 261 krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~ 340 (889)
T KOG4658|consen 261 KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPD 340 (889)
T ss_pred CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccccccc
Confidence 99999999999999999999999988899999999999999976455
Q ss_pred -------------------------CCC-CChHHHHHHHHHHhhc-cCC---cchhhhhhhhccccccCchHHHHHHHhh
Q 047700 124 -------------------------SKN-KPLAEWKDALQKLRSS-AGK---LDALVYSSIELSYNYLIDQVVKSAFLLC 173 (629)
Q Consensus 124 -------------------------l~~-~~~~~w~~~~~~~~~~-~~~---~~~~i~~~l~~sy~~L~~~~~k~cfl~~ 173 (629)
++. .+..+|+++.+.+.+. ..+ ..+.+++++++|||.||.+ +|.||+||
T Consensus 341 i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLyc 419 (889)
T KOG4658|consen 341 IEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYC 419 (889)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhh
Confidence 554 4888999999999665 322 3688999999999999977 99999999
Q ss_pred cccCCCCCCCHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHhhcCcccccC---CCCceehhHHHHHHHHhhhc---
Q 047700 174 GLLKQPYDAPVMDLLKYGMGLGLFEGIYTMQERRDKVYALVHRLKDSCLLLDSH---SEDWFSMHDIVRDVSISIAS--- 247 (629)
Q Consensus 174 ~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~i~~L~~~~ll~~~~---~~~~~~mhd~~~~l~~~~~~--- 247 (629)
|+||+||.|+++.||.+||||||+.+....+.+++.|++|+.+|+++++++... +...|+|||++||||.++|.
T Consensus 420 alFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~ 499 (889)
T KOG4658|consen 420 ALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFG 499 (889)
T ss_pred ccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhcccc
Confidence 999999999999999999999999886677889999999999999999998774 45889999999999999999
Q ss_pred --cCceEEEEeCCeeeccccccccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCc--ccccc-hhhhcc
Q 047700 248 --RDHHVITVRNDVLVGWLNNDVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQ--LLSLP-QSVHLL 322 (629)
Q Consensus 248 --~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~--~~~lp-~~l~~l 322 (629)
.+..+... +......+....+..+|++++.++.+..++.... ++.|++|-+.+|. +..++ ..|..+
T Consensus 500 ~~~e~~iv~~-~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~--------~~~L~tLll~~n~~~l~~is~~ff~~m 570 (889)
T KOG4658|consen 500 KQEENQIVSD-GVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE--------NPKLRTLLLQRNSDWLLEISGEFFRSL 570 (889)
T ss_pred ccccceEEEC-CcCccccccccchhheeEEEEeccchhhccCCCC--------CCccceEEEeecchhhhhcCHHHHhhC
Confidence 56533322 2233334555667889999999999988887776 4568888888775 55554 347778
Q ss_pred cCCcEEEcCCcC-CCC-cccccCccccceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEe
Q 047700 323 SNLQTLCLDQCV-LGD-ISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYM 400 (629)
Q Consensus 323 ~~L~~L~l~~~~-l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l 400 (629)
+.|++|||++|. +.. |..|+.|-+||+|+++++.+..+|.++++|++|.+|++..+..+..+|.. ...|.+|++|.+
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLRL 649 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccch-hhhcccccEEEe
Confidence 999999999874 444 78899999999999999999999999999999999999888777666543 666999999988
Q ss_pred ccccccccccCCCcccccccccccCccc---cCcceEEccCcch---hhh--------------------ccccCChhhh
Q 047700 401 GNTFVKWEFEGKEGGAEASATFVFPKVI---SNLEELKLGGKDI---TMI--------------------CQDHLPKHLF 454 (629)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l---~~L~~L~L~~~~~---~~~--------------------~~~~~~~~~~ 454 (629)
.......... ...++ .+|+.+....... .++ .........+
T Consensus 650 ~~s~~~~~~~-------------~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l 716 (889)
T KOG4658|consen 650 PRSALSNDKL-------------LLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSL 716 (889)
T ss_pred eccccccchh-------------hHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccc
Confidence 7664211100 11112 2222222211111 000 0001123445
Q ss_pred cccceeeeccCCCCceeeccccccCchhhhhhc-cccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccce
Q 047700 455 QNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELR-QFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTE 533 (629)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~-~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~ 533 (629)
++|++|.+.+|...+.......... .. .|+++.. +.+.+|.....+.+ ....|+|+.|.+..|+.+++
T Consensus 717 ~~L~~L~i~~~~~~e~~~~~~~~~~------~~~~f~~l~~--~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 717 GNLEELSILDCGISEIVIEWEESLI------VLLCFPNLSK--VSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred cCcceEEEEcCCCchhhcccccccc------hhhhHHHHHH--HHhhccccccccch---hhccCcccEEEEeccccccc
Confidence 6777777777766543322111111 11 2566777 77777777777543 34568999999999988877
Q ss_pred ecccccccc---cccccccccccc-ccccccccceeccCCCeeecCCCceeeecCCCCccccCCC
Q 047700 534 IISSEEDVE---EDEVVFSRLKWL-SLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKVMIFSCG 594 (629)
Q Consensus 534 ~~~~~~~~~---~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~ 594 (629)
+........ .....|.++..+ .+.+.+.+..+.. ..-.++.|+.+.+..||++.++|..
T Consensus 786 ~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~--~~l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 786 IIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYW--LPLSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred CCCHHHHhhhcccEEecccccccceeeecCCCCceeEe--cccCccchhheehhcCcccccCccc
Confidence 765443321 113467777777 4666666666555 4556677888888888888887753
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.6e-53 Score=492.74 Aligned_cols=543 Identities=21% Similarity=0.259 Sum_probs=358.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe---CCC-----------cC-HHHHHHHHHHHhCCcccCCCHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLK---SST-----------AN-VEKIQDEIAEQLGLELCKGTESE 65 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~-----------~~-~~~~~~~i~~~l~~~~~~~~~~~ 65 (629)
||+||||||+||||||+++|++... +|++.+|++. +.. ++ ...+++.++.++........ .
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~--~ 284 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI--Y 284 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCccc--C
Confidence 6899999999999999999998765 5999988742 211 11 23455666666543221110 0
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCCcchhhhhhccCCCCCCcEEEEeeccccccccc-cc---------------------
Q 047700 66 RARTLFDQLWKEKILIILDDIWANIDLETVGILFGGAHRGCKILLTPRYQNVLVSE-MH--------------------- 123 (629)
Q Consensus 66 ~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~-~~--------------------- 123 (629)
....+++++++||+||||||||+..+|+.+.....+.++||+||||||+++++... ..
T Consensus 285 ~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~A 364 (1153)
T PLN03210 285 HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSA 364 (1153)
T ss_pred CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHh
Confidence 12457788999999999999999999999988777788999999999999887321 11
Q ss_pred ----------------------------------CCCCChHHHHHHHHHHhhccCCcchhhhhhhhccccccCchHHHHH
Q 047700 124 ----------------------------------SKNKPLAEWKDALQKLRSSAGKLDALVYSSIELSYNYLIDQVVKSA 169 (629)
Q Consensus 124 ----------------------------------l~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c 169 (629)
+++++..+|+.+++++.... +..+..+|++||++|+++..|.|
T Consensus 365 f~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~ 441 (1153)
T PLN03210 365 FKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAI 441 (1153)
T ss_pred cCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhh
Confidence 77888999999999997644 56899999999999986447999
Q ss_pred HHhhcccCCCCCCCHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHhhcCcccccCCCCceehhHHHHHHHHhhhccC
Q 047700 170 FLLCGLLKQPYDAPVMDLLKYGMGLGLFEGIYTMQERRDKVYALVHRLKDSCLLLDSHSEDWFSMHDIVRDVSISIASRD 249 (629)
Q Consensus 170 fl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~i~~L~~~~ll~~~~~~~~~~mhd~~~~l~~~~~~~~ 249 (629)
|+|+|+|+.+..+ +.+..|.|++.+.. +.-++.|+++++++.. .+.+.|||++|+||++++.++
T Consensus 442 Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~ 505 (1153)
T PLN03210 442 FRHIACLFNGEKV---NDIKLLLANSDLDV-----------NIGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQ 505 (1153)
T ss_pred hheehhhcCCCCH---HHHHHHHHhcCCCc-----------hhChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhh
Confidence 9999999976544 34667777665432 1127889999999765 457999999999999998654
Q ss_pred c-------eEEEEe----------C-Ceee----------c--cc--ccccc----------------------------
Q 047700 250 H-------HVITVR----------N-DVLV----------G--WL--NNDVL---------------------------- 269 (629)
Q Consensus 250 ~-------~~~~~~----------~-~~~~----------~--~~--~~~~~---------------------------- 269 (629)
. +.+... + .... . +. .....
T Consensus 506 ~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~ 585 (1153)
T PLN03210 506 SNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFD 585 (1153)
T ss_pred cCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchh
Confidence 2 111000 0 0000 0 00 00012
Q ss_pred ---ccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcC-CCCcccccCcc
Q 047700 270 ---KNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCV-LGDISIIGNLE 345 (629)
Q Consensus 270 ---~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~-l~~~~~i~~l~ 345 (629)
..+|.|.+.++.+..+|.... +.+|+.|++++|.+..+|..+..+++|++|++++|. +..++.++.++
T Consensus 586 ~lp~~Lr~L~~~~~~l~~lP~~f~--------~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~ 657 (1153)
T PLN03210 586 YLPPKLRLLRWDKYPLRCMPSNFR--------PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMAT 657 (1153)
T ss_pred hcCcccEEEEecCCCCCCCCCcCC--------ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCC
Confidence 234444444444444544332 578888888888888888888888889999988775 55567788888
Q ss_pred ccceeeccCC-CCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCccccccccccc
Q 047700 346 KLENLSLVDS-DIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVF 424 (629)
Q Consensus 346 ~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 424 (629)
+|++|++++| .+..+|..++++++|+.|++++|..++.+|.. + ++++|+.|++++|.... .+
T Consensus 658 ~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~---------------~~ 720 (1153)
T PLN03210 658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLK---------------SF 720 (1153)
T ss_pred cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCcc---------------cc
Confidence 8999999887 56688888888889999999888888888875 3 78888888888886422 25
Q ss_pred CccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCC
Q 047700 425 PKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKR 504 (629)
Q Consensus 425 p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~ 504 (629)
|....+|+.|++++|.+..++.. ..+++|++|.+.++...... ..... +..+....+++|+. |++++|+.
T Consensus 721 p~~~~nL~~L~L~~n~i~~lP~~----~~l~~L~~L~l~~~~~~~l~-~~~~~---l~~~~~~~~~sL~~--L~Ls~n~~ 790 (1153)
T PLN03210 721 PDISTNISWLDLDETAIEEFPSN----LRLENLDELILCEMKSEKLW-ERVQP---LTPLMTMLSPSLTR--LFLSDIPS 790 (1153)
T ss_pred ccccCCcCeeecCCCcccccccc----ccccccccccccccchhhcc-ccccc---cchhhhhccccchh--eeCCCCCC
Confidence 55557888888888887754322 13556666666654332211 00000 00010112344455 55555544
Q ss_pred CccccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccc--------------------e
Q 047700 505 LKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLT--------------------S 564 (629)
Q Consensus 505 l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--------------------~ 564 (629)
+..+|. .++++++|+.|++.+|..++.+|... .+++|+.|++++|..+. .
T Consensus 791 l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~~~--------~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~ 860 (1153)
T PLN03210 791 LVELPS--SIQNLHKLEHLEIENCINLETLPTGI--------NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEE 860 (1153)
T ss_pred ccccCh--hhhCCCCCCEEECCCCCCcCeeCCCC--------CccccCEEECCCCCccccccccccccCEeECCCCCCcc
Confidence 444432 24445555555555554444444322 24444444444444433 3
Q ss_pred eccCCCeeecCCCceeeecCCCCccccCCCCCCchhhHHhhhccCCCccc
Q 047700 565 FCSGNCTFKFPSLEDLFVIDCPKVMIFSCGVSSTPRLREVRKNWGLDKGC 614 (629)
Q Consensus 565 ~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~l~~~~~~~~~~ 614 (629)
+|. ....+++|+.|++.+|++|..+|..+..+++|+.+. ..+|..+.
T Consensus 861 iP~--si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~-l~~C~~L~ 907 (1153)
T PLN03210 861 VPW--WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD-FSDCGALT 907 (1153)
T ss_pred ChH--HHhcCCCCCEEECCCCCCcCccCcccccccCCCeee-cCCCcccc
Confidence 333 345677778888888888777777777777777776 66676543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.97 E-value=1.3e-32 Score=274.71 Aligned_cols=198 Identities=30% Similarity=0.479 Sum_probs=160.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcc----cCCCHHHHHHHHHHHHcC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLEL----CKGTESERARTLFDQLWK 76 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~l~~ 76 (629)
||+|+||||+||||||+.+|++...+.+|+.++||++++..+..++++.|+.+++... ...+..+....+.+.|++
T Consensus 21 ~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 100 (287)
T PF00931_consen 21 VVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKD 100 (287)
T ss_dssp EEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCC
T ss_pred EEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcc
Confidence 5899999999999999999999888889999999999999999999999999998763 334567788999999999
Q ss_pred CcEEEEEcCCCCCcchhhhhhccCCCCCCcEEEEeecccccccccc--c-------------------------------
Q 047700 77 EKILIILDDIWANIDLETVGILFGGAHRGCKILLTPRYQNVLVSEM--H------------------------------- 123 (629)
Q Consensus 77 k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~~--~------------------------------- 123 (629)
+++|+||||||+...|+.+...++....|++||||||+..++.... .
T Consensus 101 ~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~ 180 (287)
T PF00931_consen 101 KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPED 180 (287)
T ss_dssp TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TT
T ss_pred ccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999998888777778999999999998874221 0
Q ss_pred -------------------------CC-CCChHHHHHHHHHHhhccCC---cchhhhhhhhccccccCchHHHHHHHhhc
Q 047700 124 -------------------------SK-NKPLAEWKDALQKLRSSAGK---LDALVYSSIELSYNYLIDQVVKSAFLLCG 174 (629)
Q Consensus 124 -------------------------l~-~~~~~~w~~~~~~~~~~~~~---~~~~i~~~l~~sy~~L~~~~~k~cfl~~~ 174 (629)
++ ..+..+|+++++.+.....+ ....+..++.+||+.||++ +|+||.||+
T Consensus 181 ~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~ 259 (287)
T PF00931_consen 181 LEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDE-LRRCFLYLS 259 (287)
T ss_dssp SCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCcc-HHHHHhhCc
Confidence 32 22667899988888555432 3688999999999999998 999999999
Q ss_pred ccCCCCCCCHHHHHHHHhhcccccc
Q 047700 175 LLKQPYDAPVMDLLKYGMGLGLFEG 199 (629)
Q Consensus 175 ~fp~~~~i~~~~li~~w~a~g~~~~ 199 (629)
+||+++.|+++.++++|+|||+++.
T Consensus 260 ~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 260 IFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp GSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred CCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999999999999999999999965
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=4.1e-22 Score=232.37 Aligned_cols=286 Identities=20% Similarity=0.143 Sum_probs=175.2
Q ss_pred cCCccEEEecCCccc-ccchhhhcccCCcEEEcCCcCCCC--cccccCccccceeeccCCCCc-cCchhhhcCccccEEe
Q 047700 299 MSKLRGLALSKMQLL-SLPQSVHLLSNLQTLCLDQCVLGD--ISIIGNLEKLENLSLVDSDIE-WLPNEIGELTQLRLLD 374 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~ 374 (629)
+++|++|++++|.+. .+|..++.+++|++|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 677888888888776 667778888888888888887764 567788888888888888776 5677888888888888
Q ss_pred ecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchhhhccccCChhhh
Q 047700 375 LSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLF 454 (629)
Q Consensus 375 l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 454 (629)
+++|...+.+|.. ++++++|++|++++|.+....+. .-..+.+|+.|+++.|.+....... ...+
T Consensus 219 L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~------------~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l 283 (968)
T PLN00113 219 LGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPS------------SLGNLKNLQYLFLYQNKLSGPIPPS--IFSL 283 (968)
T ss_pred CcCCccCCcCChh-HhcCCCCCEEECcCceeccccCh------------hHhCCCCCCEEECcCCeeeccCchh--Hhhc
Confidence 8887555566765 78888888888888766432221 0112355666667666654221111 1345
Q ss_pred cccceeeeccCCCCceeeccccccCchhhhh-------------hccccCceeeeEEEecCCCCccccchHHHhcccCcc
Q 047700 455 QNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE-------------LRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLM 521 (629)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~-------------~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~ 521 (629)
++|++|+++++......+..+..+++|+.|. ...+++|+. |++++|.....++ ..++.+++|+
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~--L~L~~n~l~~~~p--~~l~~~~~L~ 359 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV--LQLWSNKFSGEIP--KNLGKHNNLT 359 (968)
T ss_pred cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE--EECcCCCCcCcCC--hHHhCCCCCc
Confidence 5666666666544433444444455555543 344567777 7777754433332 3356667777
Q ss_pred eEEEecccccceeccccccc-----------------cccccccccccccccccccccceeccCCCeeecCCCceeeecC
Q 047700 522 KLRIGGCKLMTEIISSEEDV-----------------EEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVID 584 (629)
Q Consensus 522 ~L~l~~c~~l~~~~~~~~~~-----------------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~ 584 (629)
.|++++|.....++...... +.....+++|+.|++.+|.-...+|. ....+|+|+.|++++
T Consensus 360 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS--EFTKLPLVYFLDISN 437 (968)
T ss_pred EEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh--hHhcCCCCCEEECcC
Confidence 77777665444433322110 00112355666666666544334443 445566677777766
Q ss_pred CCCccccCCCCCCchhhHHhh
Q 047700 585 CPKVMIFSCGVSSTPRLREVR 605 (629)
Q Consensus 585 c~~L~~lp~~~~~l~~L~~l~ 605 (629)
|.-...+|..+..+++|+.|.
T Consensus 438 N~l~~~~~~~~~~l~~L~~L~ 458 (968)
T PLN00113 438 NNLQGRINSRKWDMPSLQMLS 458 (968)
T ss_pred CcccCccChhhccCCCCcEEE
Confidence 655445555556667777666
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=9.2e-22 Score=229.46 Aligned_cols=313 Identities=19% Similarity=0.169 Sum_probs=186.9
Q ss_pred cccceEEeccCCCCC-CCCCCCCCCCcchhccCCccEEEecCCccc-ccchhhhcccCCcEEEcCCcCCCC--cccccCc
Q 047700 269 LKNCSAVSLNDIEIG-VLPKGLEYPQLEFFWMSKLRGLALSKMQLL-SLPQSVHLLSNLQTLCLDQCVLGD--ISIIGNL 344 (629)
Q Consensus 269 ~~~l~~L~l~~~~~~-~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~l~~--~~~i~~l 344 (629)
+++++.|++++|.+. .+|..+.. +++|++|++++|.+. .+|..++++++|++|++++|.+.. |..++++
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~-------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 211 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGS-------FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhc-------CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence 445556666555543 33433322 566666666666654 455556666666666666666544 4556666
Q ss_pred cccceeeccCCCCc-cCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCc--ccccc--
Q 047700 345 EKLENLSLVDSDIE-WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEG--GAEAS-- 419 (629)
Q Consensus 345 ~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~-- 419 (629)
++|++|++++|++. .+|..++++++|++|++++|...+.+|.. ++++++|+.|++++|.+....+.... ..+..
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence 66666666666555 45556666666666666665444445544 56666666666666554322211000 00000
Q ss_pred -----cccccCc---cccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhh------
Q 047700 420 -----ATFVFPK---VISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE------ 485 (629)
Q Consensus 420 -----~~~~~p~---~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~------ 485 (629)
....+|. .+.+|+.|++++|.+....... ...+++|+.|.+.++......+..+..+++|+.|.
T Consensus 291 Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA--LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred CcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh--HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 0112332 2456777777777665322111 23466777777777665544455555556666654
Q ss_pred -------hccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceecccccccccccccccccccccccc
Q 047700 486 -------LRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLEC 558 (629)
Q Consensus 486 -------~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 558 (629)
...+++|+. |++++++....++ ..++.+++|+.|++.+|...+.++.... .+++|+.|++++
T Consensus 369 ~~~~p~~~~~~~~L~~--L~l~~n~l~~~~p--~~~~~~~~L~~L~L~~n~l~~~~p~~~~-------~l~~L~~L~Ls~ 437 (968)
T PLN00113 369 TGEIPEGLCSSGNLFK--LILFSNSLEGEIP--KSLGACRSLRRVRLQDNSFSGELPSEFT-------KLPLVYFLDISN 437 (968)
T ss_pred EeeCChhHhCcCCCCE--EECcCCEecccCC--HHHhCCCCCCEEECcCCEeeeECChhHh-------cCCCCCEEECcC
Confidence 223456777 7777754433332 3467889999999999986666655443 589999999998
Q ss_pred ccccceeccCCCeeecCCCceeeecCCCCccccCCCCCCchhhHHhh
Q 047700 559 LESLTSFCSGNCTFKFPSLEDLFVIDCPKVMIFSCGVSSTPRLREVR 605 (629)
Q Consensus 559 ~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~l~ 605 (629)
+.-...++. ....+|+|+.|++.+|.-...+|..+ ..++|+.|+
T Consensus 438 N~l~~~~~~--~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ 481 (968)
T PLN00113 438 NNLQGRINS--RKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLD 481 (968)
T ss_pred CcccCccCh--hhccCCCCcEEECcCceeeeecCccc-ccccceEEE
Confidence 765555554 45679999999999998877777653 457788777
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=7.5e-23 Score=205.35 Aligned_cols=284 Identities=21% Similarity=0.235 Sum_probs=176.4
Q ss_pred cccceEEeccCCCC--CCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cc-cccCc
Q 047700 269 LKNCSAVSLNDIEI--GVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-IS-IIGNL 344 (629)
Q Consensus 269 ~~~l~~L~l~~~~~--~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~-~i~~l 344 (629)
++.+|.+.+..|++ ..+|..+-- +..|++|||++|+++++|..+.+.+++-+|+|++|+|.. |. -+-++
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~-------l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinL 149 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFR-------LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINL 149 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcc-------cccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhh
Confidence 45566666666665 346655432 888999999999999999888889999999999999888 43 35588
Q ss_pred cccceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCccccccccccc
Q 047700 345 EKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVF 424 (629)
Q Consensus 345 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 424 (629)
..|-+|||++|++..+|+.+.+|.+|++|.+++|+. ..+-...+-.+++|+.|.++++.-+ +..+
T Consensus 150 tDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL-~hfQLrQLPsmtsL~vLhms~TqRT--------------l~N~ 214 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL-NHFQLRQLPSMTSLSVLHMSNTQRT--------------LDNI 214 (1255)
T ss_pred HhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChh-hHHHHhcCccchhhhhhhcccccch--------------hhcC
Confidence 899999999999999999999999999999988742 2111111233566777777766533 1125
Q ss_pred Cccc---cCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEec
Q 047700 425 PKVI---SNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSY 501 (629)
Q Consensus 425 p~~l---~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~ 501 (629)
|.++ .+|..++++.|.+..++.- .-.+++|+.|.++++...+.... ...-.+|+. |+++.
T Consensus 215 Ptsld~l~NL~dvDlS~N~Lp~vPec---ly~l~~LrrLNLS~N~iteL~~~------------~~~W~~lEt--LNlSr 277 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSENNLPIVPEC---LYKLRNLRRLNLSGNKITELNMT------------EGEWENLET--LNLSR 277 (1255)
T ss_pred CCchhhhhhhhhccccccCCCcchHH---HhhhhhhheeccCcCceeeeecc------------HHHHhhhhh--hcccc
Confidence 5444 6677777777777654432 23456777777776543332211 222334455 55555
Q ss_pred CCCCccccchHHHhcccCcceEEEeccccc-ceeccccccccccccccccccccccccccccceeccCCCeeecCCCcee
Q 047700 502 CKRLKNLVSSFTAKSLVHLMKLRIGGCKLM-TEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDL 580 (629)
Q Consensus 502 c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L 580 (629)
+.++.+| ..+..++.|+.|.+.+|..- +.+| +++..+.+|+.+...+ ++|+-+|. +...|+.|++|
T Consensus 278 -NQLt~LP--~avcKL~kL~kLy~n~NkL~FeGiP-------SGIGKL~~Levf~aan-N~LElVPE--glcRC~kL~kL 344 (1255)
T KOG0444|consen 278 -NQLTVLP--DAVCKLTKLTKLYANNNKLTFEGIP-------SGIGKLIQLEVFHAAN-NKLELVPE--GLCRCVKLQKL 344 (1255)
T ss_pred -chhccch--HHHhhhHHHHHHHhccCcccccCCc-------cchhhhhhhHHHHhhc-cccccCch--hhhhhHHHHHh
Confidence 4555554 33556666666666555421 1222 2222455555555554 45555555 55556666666
Q ss_pred eecCCCCccccCCCCCCchhhHHhh
Q 047700 581 FVIDCPKVMIFSCGVSSTPRLREVR 605 (629)
Q Consensus 581 ~i~~c~~L~~lp~~~~~l~~L~~l~ 605 (629)
.+ +|.+|-.+|.+|.-++.|+.|+
T Consensus 345 ~L-~~NrLiTLPeaIHlL~~l~vLD 368 (1255)
T KOG0444|consen 345 KL-DHNRLITLPEAIHLLPDLKVLD 368 (1255)
T ss_pred cc-cccceeechhhhhhcCCcceee
Confidence 55 3444555666666666666655
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.1e-21 Score=195.94 Aligned_cols=312 Identities=21% Similarity=0.226 Sum_probs=179.1
Q ss_pred ccccceEEeccCCCCCCCCCCCCCCC-cchhc----------------cCCccEEEecCCcccccch-hhhcccCCcEEE
Q 047700 268 VLKNCSAVSLNDIEIGVLPKGLEYPQ-LEFFW----------------MSKLRGLALSKMQLLSLPQ-SVHLLSNLQTLC 329 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~~lp~~~~~~~-l~~l~----------------~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~ 329 (629)
.+.+++.+.+.+|.+..+|...+... +..|. ++.|++|||+.|.+..+|. ++..=.++++|+
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence 45566666777666666666554311 11111 4455555555555554431 233334555555
Q ss_pred cCCcCCCCc--ccccCccccceeeccCCCCccCch-hhhcCccccEEeecCCCCCCccChhhhhcCccCceEEecccccc
Q 047700 330 LDQCVLGDI--SIIGNLEKLENLSLVDSDIEWLPN-EIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 330 l~~~~l~~~--~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~ 406 (629)
|+.|.|+++ ..|..+.+|.+|.|+.|+++.+|. .+.+|++|+.|++..| .++....-.+.+|++|+.|.+..|.+.
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcc
Confidence 555555552 345555555555555555555543 2334555555555554 333332222455555555555555443
Q ss_pred ccccCCCcccccccccccCccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhh-
Q 047700 407 WEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE- 485 (629)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~- 485 (629)
...+|. --.+.+++.|+|..|++..+-.+++ .+++.|+.|+++.+......++.++-+++|+.|.
T Consensus 259 kL~DG~------------Fy~l~kme~l~L~~N~l~~vn~g~l--fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 259 KLDDGA------------FYGLEKMEHLNLETNRLQAVNEGWL--FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred cccCcc------------eeeecccceeecccchhhhhhcccc--cccchhhhhccchhhhheeecchhhhcccceeEec
Confidence 222221 1124666777777777766655444 4566777777776665555555554444454443
Q ss_pred ------------hccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceeccccccccccccccccccc
Q 047700 486 ------------LRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKW 553 (629)
Q Consensus 486 ------------~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~ 553 (629)
+..+..|+. |.|+. +.+..+.. ..+..+.+|++|++++|..-..+.. . .....++++|+.
T Consensus 325 s~N~i~~l~~~sf~~L~~Le~--LnLs~-Nsi~~l~e-~af~~lssL~~LdLr~N~ls~~IED-a---a~~f~gl~~Lrk 396 (873)
T KOG4194|consen 325 SSNRITRLDEGSFRVLSQLEE--LNLSH-NSIDHLAE-GAFVGLSSLHKLDLRSNELSWCIED-A---AVAFNGLPSLRK 396 (873)
T ss_pred cccccccCChhHHHHHHHhhh--hcccc-cchHHHHh-hHHHHhhhhhhhcCcCCeEEEEEec-c---hhhhccchhhhh
Confidence 344556666 77776 55666543 4456788888888888764332221 1 112235899999
Q ss_pred cccccccccceeccCCCeeecCCCceeeecCCCCccccCCCCCCchhhHHhh
Q 047700 554 LSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKVMIFSCGVSSTPRLREVR 605 (629)
Q Consensus 554 L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~l~ 605 (629)
|.+.+ .+++.++.. ....+++||.|++.+++-..--|..+..+ +|++|.
T Consensus 397 L~l~g-Nqlk~I~kr-Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv 445 (873)
T KOG4194|consen 397 LRLTG-NQLKSIPKR-AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV 445 (873)
T ss_pred eeecC-ceeeecchh-hhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence 99998 788888752 45678999999998888666556778888 888887
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=2.2e-21 Score=194.94 Aligned_cols=297 Identities=21% Similarity=0.274 Sum_probs=195.7
Q ss_pred cccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC---cccccC
Q 047700 267 DVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD---ISIIGN 343 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~---~~~i~~ 343 (629)
.....++.|.+....+..+|+.+.. +.+|..|.+.+|++.++...++.++.||.+.+++|++.. |+.|.+
T Consensus 29 ~qMt~~~WLkLnrt~L~~vPeEL~~-------lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~ 101 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLEQVPEELSR-------LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR 101 (1255)
T ss_pred HHhhheeEEEechhhhhhChHHHHH-------HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcc
Confidence 3456777788887778888876544 778888888888888887778888888888888888876 788889
Q ss_pred ccccceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccc
Q 047700 344 LEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFV 423 (629)
Q Consensus 344 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 423 (629)
+..|..|||++|.+.+.|..+.+-+++-.|++++| ++..+|...+-+|+.|-.|++++|.+..
T Consensus 102 l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~---------------- 164 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEM---------------- 164 (1255)
T ss_pred cccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhh----------------
Confidence 99999999999999999988888888999999987 8888888878888889999999887643
Q ss_pred cCccc---cCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCc-eeeccccccCchhhhh------------hc
Q 047700 424 FPKVI---SNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDN-FSIGSLQRFHNMEKLE------------LR 487 (629)
Q Consensus 424 ~p~~l---~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~------------~~ 487 (629)
+|..+ .+|+.|+|++|.+...-...+| .+++|+.|.+++..... ..|.++..+.||..++ ..
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP--smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly 242 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLP--SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLY 242 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhcCc--cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHh
Confidence 55544 5677788888887643322232 23344444444432221 2233333344433332 33
Q ss_pred cccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceecccccccccccccccccccccccccc-ccceec
Q 047700 488 QFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLE-SLTSFC 566 (629)
Q Consensus 488 ~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~ 566 (629)
.+++|+. |+|++ +.++.+. ...+.-.+|+.|.++.|. +..+|.... .+++|+.|.+.+.. ...-+|
T Consensus 243 ~l~~Lrr--LNLS~-N~iteL~--~~~~~W~~lEtLNlSrNQ-Lt~LP~avc-------KL~kL~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 243 KLRNLRR--LNLSG-NKITELN--MTEGEWENLETLNLSRNQ-LTVLPDAVC-------KLTKLTKLYANNNKLTFEGIP 309 (1255)
T ss_pred hhhhhhe--eccCc-Cceeeee--ccHHHHhhhhhhccccch-hccchHHHh-------hhHHHHHHHhccCcccccCCc
Confidence 4445555 55555 4444432 123344455555555443 444443332 46666666665522 123455
Q ss_pred cCCCeeecCCCceeeecCCCCccccCCCCCCchhhHHhh
Q 047700 567 SGNCTFKFPSLEDLFVIDCPKVMIFSCGVSSTPRLREVR 605 (629)
Q Consensus 567 ~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~l~ 605 (629)
. +.+.+-.|+.+...+ .+|+-+|.|+.+++.|+.|.
T Consensus 310 S--GIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~ 345 (1255)
T KOG0444|consen 310 S--GIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLK 345 (1255)
T ss_pred c--chhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhc
Confidence 5 666677777666544 35777777788888888776
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=1.1e-18 Score=203.92 Aligned_cols=278 Identities=22% Similarity=0.210 Sum_probs=151.4
Q ss_pred cCCccEEEecCCcc------c-ccchhhhccc-CCcEEEcCCcCCCCcccccCccccceeeccCCCCccCchhhhcCccc
Q 047700 299 MSKLRGLALSKMQL------L-SLPQSVHLLS-NLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQL 370 (629)
Q Consensus 299 ~~~L~~L~l~~~~~------~-~lp~~l~~l~-~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L 370 (629)
|++|+.|.+..+.. . .+|..+..++ +|++|++.++.+..++....+.+|+.|++.++++..+|..+..+++|
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~L 636 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGL 636 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCC
Confidence 55555555543321 1 2344444433 35555555555554222223455555555555555555555555555
Q ss_pred cEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCcc---ccCcceEEccCc-chhhhcc
Q 047700 371 RLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKV---ISNLEELKLGGK-DITMICQ 446 (629)
Q Consensus 371 ~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~---l~~L~~L~L~~~-~~~~~~~ 446 (629)
+.|++++|..++.+|. ++.+++|+.|++.+|.... .+|.. +.+|+.|+++++ .+..++.
T Consensus 637 k~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~---------------~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 637 RNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV---------------ELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred CEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc---------------ccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 5555555544555553 4555555555555543221 12222 234444444442 2222211
Q ss_pred ccCChhhhcccceeeeccCCCCceeeccccccCchhhhh-----------hccccCceeeeEEEecCCCC------cccc
Q 047700 447 DHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE-----------LRQFIQRDIFKWRVSYCKRL------KNLV 509 (629)
Q Consensus 447 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~-----------~~~~~~L~~~~L~l~~c~~l------~~l~ 509 (629)
. ..+++|+.|.+.+|......+.. ..+|+.|. ...+++|+. |.+.+|... ..++
T Consensus 700 ~----i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~--L~l~~~~~~~l~~~~~~l~ 770 (1153)
T PLN03210 700 G----INLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDE--LILCEMKSEKLWERVQPLT 770 (1153)
T ss_pred c----CCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccccccccccccc--ccccccchhhccccccccc
Confidence 1 12344555555555433322211 11222222 113456666 666654321 1111
Q ss_pred chHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceeccCCCeeecCCCceeeecCCCCcc
Q 047700 510 SSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKVM 589 (629)
Q Consensus 510 ~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~ 589 (629)
+ .....+++|+.|++++|+.+..+|.... .+++|+.|+|.+|++++.+|. .. .+++|+.|.+++|.++.
T Consensus 771 ~-~~~~~~~sL~~L~Ls~n~~l~~lP~si~-------~L~~L~~L~Ls~C~~L~~LP~--~~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 771 P-LMTMLSPSLTRLFLSDIPSLVELPSSIQ-------NLHKLEHLEIENCINLETLPT--GI-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred h-hhhhccccchheeCCCCCCccccChhhh-------CCCCCCEEECCCCCCcCeeCC--CC-CccccCEEECCCCCccc
Confidence 1 1123468999999999998888887654 599999999999999999987 33 78999999999998876
Q ss_pred ccC--------------------CCCCCchhhHHhhhccCCCccc
Q 047700 590 IFS--------------------CGVSSTPRLREVRKNWGLDKGC 614 (629)
Q Consensus 590 ~lp--------------------~~~~~l~~L~~l~~~~~~~~~~ 614 (629)
.+| .++..+++|+.|. ..+|+.+.
T Consensus 840 ~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~-L~~C~~L~ 883 (1153)
T PLN03210 840 TFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLD-MNGCNNLQ 883 (1153)
T ss_pred cccccccccCEeECCCCCCccChHHHhcCCCCCEEE-CCCCCCcC
Confidence 654 3345566777776 66676544
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=1.6e-19 Score=180.50 Aligned_cols=309 Identities=18% Similarity=0.250 Sum_probs=205.9
Q ss_pred ccccceEEeccCCCCCCCCCC--CCCCCcchhc---------------cCCccEEEecCCcccccc-hhhhcccCCcEEE
Q 047700 268 VLKNCSAVSLNDIEIGVLPKG--LEYPQLEFFW---------------MSKLRGLALSKMQLLSLP-QSVHLLSNLQTLC 329 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~~lp~~--~~~~~l~~l~---------------~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~ 329 (629)
.+...+.|++++|.+..+... ...++|.... ..+|+.|+|.+|.|+++. +.+..++.|+.||
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 456788999999998776543 2323222222 334555555555555442 3355555666666
Q ss_pred cCCcCCCCc--ccccCccccceeeccCCCCccCc-hhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEecccccc
Q 047700 330 LDQCVLGDI--SIIGNLEKLENLSLVDSDIEWLP-NEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 330 l~~~~l~~~--~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~ 406 (629)
|+.|.|..+ +++..-.++++|+|++|+|+.+- ..+..+.+|.+|.++.| .++.+|...+.+|++|+.|++..|.+.
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcccccee
Confidence 666666552 34555556666666666666543 24556667777777776 777788777777888888888877654
Q ss_pred ccccCCCcccccccccccCccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhh-
Q 047700 407 WEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE- 485 (629)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~- 485 (629)
.... .--.++++|+.|.|..|+++.+..+.+ -.+.++++|++..+.......+++..+..|+.|+
T Consensus 235 ive~------------ltFqgL~Sl~nlklqrN~I~kL~DG~F--y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~l 300 (873)
T KOG4194|consen 235 IVEG------------LTFQGLPSLQNLKLQRNDISKLDDGAF--YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDL 300 (873)
T ss_pred eehh------------hhhcCchhhhhhhhhhcCcccccCcce--eeecccceeecccchhhhhhcccccccchhhhhcc
Confidence 2110 012346788888899999887776655 3567888898888766665566666666666665
Q ss_pred ------------hccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceeccccccccccccccccccc
Q 047700 486 ------------LRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKW 553 (629)
Q Consensus 486 ------------~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~ 553 (629)
-...++|+. |+|++ +.++.+++ ..+..+..|++|.+++|+ +..+..... .++.+|++
T Consensus 301 S~NaI~rih~d~WsftqkL~~--LdLs~-N~i~~l~~-~sf~~L~~Le~LnLs~Ns-i~~l~e~af------~~lssL~~ 369 (873)
T KOG4194|consen 301 SYNAIQRIHIDSWSFTQKLKE--LDLSS-NRITRLDE-GSFRVLSQLEELNLSHNS-IDHLAEGAF------VGLSSLHK 369 (873)
T ss_pred chhhhheeecchhhhccccee--Eeccc-cccccCCh-hHHHHHHHhhhhcccccc-hHHHHhhHH------HHhhhhhh
Confidence 345678888 88888 77888765 556778899999999887 555443322 26899999
Q ss_pred cccccccccceeccCC---CeeecCCCceeeecCCCCccccCC-CCCCchhhHHhh
Q 047700 554 LSLECLESLTSFCSGN---CTFKFPSLEDLFVIDCPKVMIFSC-GVSSTPRLREVR 605 (629)
Q Consensus 554 L~l~~~~~l~~~~~~~---~~~~~p~L~~L~i~~c~~L~~lp~-~~~~l~~L~~l~ 605 (629)
|+|... .+. |...+ ....+|+|++|.+.++ +++++|. .+..++.|++|+
T Consensus 370 LdLr~N-~ls-~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 370 LDLRSN-ELS-WCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred hcCcCC-eEE-EEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceec
Confidence 999863 222 22211 2344899999999876 5888886 589999999998
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=8.6e-21 Score=181.52 Aligned_cols=129 Identities=26% Similarity=0.378 Sum_probs=74.4
Q ss_pred cccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cccccCcccc
Q 047700 269 LKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLEKL 347 (629)
Q Consensus 269 ~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~~L 347 (629)
...+..+..+.+++..+|+.+.. ...|+.|+.++|.+..+|++++.+..|..|+..+|++.. |+.++.+..|
T Consensus 90 l~~l~~l~vs~n~ls~lp~~i~s-------~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l 162 (565)
T KOG0472|consen 90 LEALKSLNVSHNKLSELPEQIGS-------LISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKL 162 (565)
T ss_pred HHHHHHhhcccchHhhccHHHhh-------hhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHH
Confidence 34455555555555556655443 455555666666666666666666666666666665555 5555666666
Q ss_pred ceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEecccccc
Q 047700 348 ENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 348 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~ 406 (629)
..+++.+|+++++|+..-+++.|++|+...| .++.+|++ ++.+.+|+.|++..|.+.
T Consensus 163 ~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~-lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 163 SKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPE-LGGLESLELLYLRRNKIR 219 (565)
T ss_pred HHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChh-hcchhhhHHHHhhhcccc
Confidence 6666666666655555545566666665554 55555555 566666666665555544
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.65 E-value=6.2e-19 Score=168.90 Aligned_cols=262 Identities=20% Similarity=0.251 Sum_probs=188.7
Q ss_pred cceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cccccCccccce
Q 047700 271 NCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLEKLEN 349 (629)
Q Consensus 271 ~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~ 349 (629)
.+..+.+++|.+..+.+.+.. +..|.+|++.+|++..+|+.++.+..++.|+.+++++.. |+.++.+..|+.
T Consensus 46 ~l~~lils~N~l~~l~~dl~n-------L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~ 118 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKN-------LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVK 118 (565)
T ss_pred chhhhhhccCchhhccHhhhc-------ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhh
Confidence 567788888888777766544 778889999999999999889999999999999998888 788999999999
Q ss_pred eeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCcccc
Q 047700 350 LSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVIS 429 (629)
Q Consensus 350 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 429 (629)
|+.+.+.+.++|++++.+-.|..++..+| ++..+|.+ ++.+.+|..+++.+|.+....+. ... +.
T Consensus 119 l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~-~~~~~~l~~l~~~~n~l~~l~~~------------~i~-m~ 183 (565)
T KOG0472|consen 119 LDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPED-MVNLSKLSKLDLEGNKLKALPEN------------HIA-MK 183 (565)
T ss_pred hhccccceeecCchHHHHhhhhhhhcccc-ccccCchH-HHHHHHHHHhhccccchhhCCHH------------HHH-HH
Confidence 99999999999999999889999988886 77778877 78888888888888876432110 111 46
Q ss_pred CcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCcccc
Q 047700 430 NLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNLV 509 (629)
Q Consensus 430 ~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~ 509 (629)
.|++|+...|-+..++.+ ..++.+|.-|++..+.. .+.| . +.++..|++ +++.. +.++.++
T Consensus 184 ~L~~ld~~~N~L~tlP~~---lg~l~~L~~LyL~~Nki-~~lP-e-----------f~gcs~L~E--lh~g~-N~i~~lp 244 (565)
T KOG0472|consen 184 RLKHLDCNSNLLETLPPE---LGGLESLELLYLRRNKI-RFLP-E-----------FPGCSLLKE--LHVGE-NQIEMLP 244 (565)
T ss_pred HHHhcccchhhhhcCChh---hcchhhhHHHHhhhccc-ccCC-C-----------CCccHHHHH--HHhcc-cHHHhhH
Confidence 677777777777644332 23344444444443321 1122 2 344555666 66655 5556653
Q ss_pred chHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceeccCCCeeecCCCceeeecCCC
Q 047700 510 SSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCP 586 (629)
Q Consensus 510 ~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~ 586 (629)
.....++++|..|++++|. +++.|.... -+.+|++|++++ ..+..+|. ..+.+ .|++|.+.++|
T Consensus 245 -ae~~~~L~~l~vLDLRdNk-lke~Pde~c-------lLrsL~rLDlSN-N~is~Lp~--sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 245 -AEHLKHLNSLLVLDLRDNK-LKEVPDEIC-------LLRSLERLDLSN-NDISSLPY--SLGNL-HLKFLALEGNP 308 (565)
T ss_pred -HHHhcccccceeeeccccc-cccCchHHH-------HhhhhhhhcccC-CccccCCc--ccccc-eeeehhhcCCc
Confidence 3445678888888888876 777776554 477788888887 56777777 67777 78888888877
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=4.7e-15 Score=161.33 Aligned_cols=238 Identities=22% Similarity=0.200 Sum_probs=176.5
Q ss_pred ccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCcccc
Q 047700 268 VLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKL 347 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L 347 (629)
...+++.|.+.+|.+..+|.. +++|++|++++|+++.+|.. .++|+.|++++|.+..++.+ ...|
T Consensus 220 l~~~L~~L~L~~N~Lt~LP~l----------p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l--p~~L 284 (788)
T PRK15387 220 LPAHITTLVIPDNNLTSLPAL----------PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL--PSGL 284 (788)
T ss_pred hhcCCCEEEccCCcCCCCCCC----------CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc--hhhc
Confidence 345789999999999998863 67899999999999988853 46899999999988874432 3578
Q ss_pred ceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCcc
Q 047700 348 ENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKV 427 (629)
Q Consensus 348 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~ 427 (629)
+.|++++|+++.+|.. +++|+.|++++| .+..+|.. ..+|+.|++.+|.+.. +|..
T Consensus 285 ~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~~----------------LP~l 340 (788)
T PRK15387 285 CKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTS----------------LPTL 340 (788)
T ss_pred CEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCcccc----------------cccc
Confidence 8999999999998863 478999999998 66777652 3467788888887643 4543
Q ss_pred ccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCcc
Q 047700 428 ISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKN 507 (629)
Q Consensus 428 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~ 507 (629)
..+|+.|+|++|.++.++. ..++|+.|.+.++.... .+ ...++|+. |++++ +.++.
T Consensus 341 p~~Lq~LdLS~N~Ls~LP~------lp~~L~~L~Ls~N~L~~-LP--------------~l~~~L~~--LdLs~-N~Lt~ 396 (788)
T PRK15387 341 PSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLTS-LP--------------ALPSGLKE--LIVSG-NRLTS 396 (788)
T ss_pred ccccceEecCCCccCCCCC------CCcccceehhhcccccc-Cc--------------ccccccce--EEecC-CcccC
Confidence 4689999999999985432 23567777776543221 11 12246888 89888 45666
Q ss_pred ccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceeccCCCeeecCCCceeeecCCCC
Q 047700 508 LVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPK 587 (629)
Q Consensus 508 l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~ 587 (629)
+|.. .++|+.|++++|. +..+|. .+.+|+.|++.+ ++++.+|. ....+++|+.|++++++-
T Consensus 397 LP~l-----~s~L~~LdLS~N~-LssIP~----------l~~~L~~L~Ls~-NqLt~LP~--sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 397 LPVL-----PSELKELMVSGNR-LTSLPM----------LPSGLLSLSVYR-NQLTRLPE--SLIHLSSETTVNLEGNPL 457 (788)
T ss_pred CCCc-----ccCCCEEEccCCc-CCCCCc----------chhhhhhhhhcc-CcccccCh--HHhhccCCCeEECCCCCC
Confidence 6532 3689999999987 556653 245788899987 56788887 677889999999998874
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=2.7e-15 Score=163.18 Aligned_cols=255 Identities=20% Similarity=0.170 Sum_probs=191.7
Q ss_pred cceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCcccccee
Q 047700 271 NCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENL 350 (629)
Q Consensus 271 ~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L 350 (629)
.-..|+++++.+..+|..+ .++|+.|++.+|+++.+|.. .++|++|++++|.++.++.. .++|+.|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l---------~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l--p~sL~~L 267 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL---------PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL--PPGLLEL 267 (788)
T ss_pred CCcEEEcCCCCCCcCCcch---------hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc--cccccee
Confidence 3457889999999999865 46899999999999999863 57999999999999985432 4689999
Q ss_pred eccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccC
Q 047700 351 SLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISN 430 (629)
Q Consensus 351 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~ 430 (629)
++++|.++.+|.. +++|+.|++++| .+..+|. .+++|+.|++++|.+.. +|....+
T Consensus 268 ~Ls~N~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~----~p~~L~~LdLS~N~L~~----------------Lp~lp~~ 323 (788)
T PRK15387 268 SIFSNPLTHLPAL---PSGLCKLWIFGN-QLTSLPV----LPPGLQELSVSDNQLAS----------------LPALPSE 323 (788)
T ss_pred eccCCchhhhhhc---hhhcCEEECcCC-ccccccc----cccccceeECCCCcccc----------------CCCCccc
Confidence 9999999988863 367889999998 6777875 25789999999997653 4444467
Q ss_pred cceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCccccc
Q 047700 431 LEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNLVS 510 (629)
Q Consensus 431 L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~~ 510 (629)
|+.|.+++|.+..++. ...+|+.|+++++.... .+. ..++|+. |++++ +.++.++.
T Consensus 324 L~~L~Ls~N~L~~LP~------lp~~Lq~LdLS~N~Ls~-LP~--------------lp~~L~~--L~Ls~-N~L~~LP~ 379 (788)
T PRK15387 324 LCKLWAYNNQLTSLPT------LPSGLQELSVSDNQLAS-LPT--------------LPSELYK--LWAYN-NRLTSLPA 379 (788)
T ss_pred ccccccccCccccccc------cccccceEecCCCccCC-CCC--------------CCcccce--ehhhc-cccccCcc
Confidence 8889999999884431 23579999998764332 211 2346777 77777 45666543
Q ss_pred hHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceeccCCCeeecCCCceeeecCCCCccc
Q 047700 511 SFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKVMI 590 (629)
Q Consensus 511 ~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~ 590 (629)
..++|+.|++++|. +..+|. ..++|+.|+++++ .+..+|. .+.+|+.|+++++. +..
T Consensus 380 -----l~~~L~~LdLs~N~-Lt~LP~----------l~s~L~~LdLS~N-~LssIP~-----l~~~L~~L~Ls~Nq-Lt~ 436 (788)
T PRK15387 380 -----LPSGLKELIVSGNR-LTSLPV----------LPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRNQ-LTR 436 (788)
T ss_pred -----cccccceEEecCCc-ccCCCC----------cccCCCEEEccCC-cCCCCCc-----chhhhhhhhhccCc-ccc
Confidence 23689999999986 555553 2578999999995 5777765 24578899998764 788
Q ss_pred cCCCCCCchhhHHhhhccCCC
Q 047700 591 FSCGVSSTPRLREVRKNWGLD 611 (629)
Q Consensus 591 lp~~~~~l~~L~~l~~~~~~~ 611 (629)
+|..+.++++|+.|. ..+++
T Consensus 437 LP~sl~~L~~L~~Ld-Ls~N~ 456 (788)
T PRK15387 437 LPESLIHLSSETTVN-LEGNP 456 (788)
T ss_pred cChHHhhccCCCeEE-CCCCC
Confidence 998888888888887 44443
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=5.6e-15 Score=161.79 Aligned_cols=244 Identities=18% Similarity=0.257 Sum_probs=164.9
Q ss_pred cceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cccccCccccce
Q 047700 271 NCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLEKLEN 349 (629)
Q Consensus 271 ~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~ 349 (629)
+...|.+.++.+..+|..+ .++|+.|++++|+++.+|..+. .+|++|++++|.++. |..+. .+|+.
T Consensus 179 ~~~~L~L~~~~LtsLP~~I---------p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~ 245 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI---------PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQE 245 (754)
T ss_pred CceEEEeCCCCcCcCCccc---------ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccE
Confidence 4567888888888888654 5678888888888888887654 588888888888877 33332 46888
Q ss_pred eeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccc-
Q 047700 350 LSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVI- 428 (629)
Q Consensus 350 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l- 428 (629)
|++++|++..+|..+. .+|+.|++++| .+..+|.. + .++|+.|++++|.+.. +|..+
T Consensus 246 L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l--~~sL~~L~Ls~N~Lt~----------------LP~~lp 303 (754)
T PRK15370 246 MELSINRITELPERLP--SALQSLDLFHN-KISCLPEN-L--PEELRYLSVYDNSIRT----------------LPAHLP 303 (754)
T ss_pred EECcCCccCcCChhHh--CCCCEEECcCC-ccCccccc-c--CCCCcEEECCCCcccc----------------Ccccch
Confidence 8888888888887764 57888888876 66777764 3 2578888888886543 33333
Q ss_pred cCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCccc
Q 047700 429 SNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNL 508 (629)
Q Consensus 429 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l 508 (629)
.+|+.|++++|.+..+ |....++|+.|.+.++.... .+. ...++|+. |++++| .++.+
T Consensus 304 ~sL~~L~Ls~N~Lt~L-----P~~l~~sL~~L~Ls~N~Lt~-LP~-------------~l~~sL~~--L~Ls~N-~L~~L 361 (754)
T PRK15370 304 SGITHLNVQSNSLTAL-----PETLPPGLKTLEAGENALTS-LPA-------------SLPPELQV--LDVSKN-QITVL 361 (754)
T ss_pred hhHHHHHhcCCccccC-----CccccccceeccccCCcccc-CCh-------------hhcCcccE--EECCCC-CCCcC
Confidence 4677888888887743 33334678888887764322 211 12357888 888885 45555
Q ss_pred cchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceeccC--CCeeecCCCceeeecCCC
Q 047700 509 VSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSG--NCTFKFPSLEDLFVIDCP 586 (629)
Q Consensus 509 ~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~p~L~~L~i~~c~ 586 (629)
|. . + .++|+.|+|++|. +..+|... .++|+.|++++ .++..+|.. .....+|++..|.+.+++
T Consensus 362 P~-~-l--p~~L~~LdLs~N~-Lt~LP~~l---------~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 362 PE-T-L--PPTITTLDVSRNA-LTNLPENL---------PAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred Ch-h-h--cCCcCEEECCCCc-CCCCCHhH---------HHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 42 1 2 3688888888886 55555432 35688888887 456666541 022335777888887776
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=3.4e-16 Score=133.07 Aligned_cols=150 Identities=29% Similarity=0.434 Sum_probs=117.2
Q ss_pred ccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cccccCccc
Q 047700 268 VLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLEK 346 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~~ 346 (629)
..+.+.+|.+++|++..+|+.+.. +.+|++|++++|+++++|.+++.+++|+.|++.-|.+.. |..||.++.
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~-------l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAE-------LKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHH-------hhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCch
Confidence 456778888888888888887765 888888888888888888888888888888888887777 788888888
Q ss_pred cceeeccCCCCc--cCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCccccccccccc
Q 047700 347 LENLSLVDSDIE--WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVF 424 (629)
Q Consensus 347 L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 424 (629)
|+.||+++|++. .+|..+-.|+.|+.|+++.| ..+-+|.. ++++++|+.|.+..|.+.. +
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll~----------------l 165 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLLS----------------L 165 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchhh----------------C
Confidence 888888888776 67877777888888888886 66777777 7888888888888776543 6
Q ss_pred CccccC---cceEEccCcchh
Q 047700 425 PKVISN---LEELKLGGKDIT 442 (629)
Q Consensus 425 p~~l~~---L~~L~L~~~~~~ 442 (629)
|++++. |+.|++.+|.+.
T Consensus 166 pkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cHHHHHHHHHHHHhcccceee
Confidence 666643 445557777766
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.49 E-value=7.6e-16 Score=162.62 Aligned_cols=100 Identities=29% Similarity=0.321 Sum_probs=66.6
Q ss_pred ceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cccccCcccccee
Q 047700 272 CSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLEKLENL 350 (629)
Q Consensus 272 l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L 350 (629)
+..|++++|.+..+|..+.. +.+|+.|.++.|.+.++|..++.+.+|++|.|..|.+.. |.++..+++|++|
T Consensus 47 L~~l~lsnn~~~~fp~~it~-------l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITL-------LSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYL 119 (1081)
T ss_pred eEEeeccccccccCCchhhh-------HHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccccc
Confidence 66677777777777766554 666777777777777777666677777777777666666 5666677777777
Q ss_pred eccCCCCccCchhhhcCccccEEeecCC
Q 047700 351 SLVDSDIEWLPNEIGELTQLRLLDLSSC 378 (629)
Q Consensus 351 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 378 (629)
++++|.+..+|.-+..+..+..+..++|
T Consensus 120 dlS~N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 120 DLSFNHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred ccchhccCCCchhHHhhhHHHHHhhhcc
Confidence 7777766666665555555555555554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=2.1e-13 Score=149.61 Aligned_cols=227 Identities=18% Similarity=0.238 Sum_probs=138.9
Q ss_pred ccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cccccCccc
Q 047700 268 VLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLEK 346 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~~ 346 (629)
.++.++.|++.+|.+..+|..+ .++|++|++++|+++.+|..+. .+|+.|++++|.+.. |..+. .+
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l---------~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~ 263 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENL---------QGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SA 263 (754)
T ss_pred cccCCcEEEecCCCCCcCChhh---------ccCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CC
Confidence 4457888888888888888654 4678888888888888886553 478888888888877 44443 47
Q ss_pred cceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCc
Q 047700 347 LENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPK 426 (629)
Q Consensus 347 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~ 426 (629)
|+.|++++|+++.+|..+. ++|+.|++++| .+..+|.. + ..+|+.|++++|.+.. +|.
T Consensus 264 L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~----------------LP~ 321 (754)
T PRK15370 264 LQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-L--PSGITHLNVQSNSLTA----------------LPE 321 (754)
T ss_pred CCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-c--hhhHHHHHhcCCcccc----------------CCc
Confidence 8888888888888887654 47888888887 66667654 2 2467778888776543 222
Q ss_pred cc-cCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCC
Q 047700 427 VI-SNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRL 505 (629)
Q Consensus 427 ~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l 505 (629)
.+ .+|+.|++++|.++.++ ....++|+.|+++++.... .+. ...++|+. |+|++| .+
T Consensus 322 ~l~~sL~~L~Ls~N~Lt~LP-----~~l~~sL~~L~Ls~N~L~~-LP~-------------~lp~~L~~--LdLs~N-~L 379 (754)
T PRK15370 322 TLPPGLKTLEAGENALTSLP-----ASLPPELQVLDVSKNQITV-LPE-------------TLPPTITT--LDVSRN-AL 379 (754)
T ss_pred cccccceeccccCCccccCC-----hhhcCcccEEECCCCCCCc-CCh-------------hhcCCcCE--EECCCC-cC
Confidence 22 46777777777766432 2223567777777663221 111 11245666 666664 44
Q ss_pred ccccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccc
Q 047700 506 KNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECL 559 (629)
Q Consensus 506 ~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 559 (629)
+.+|+. + .++|+.|++++|. +..+|..... ....+|++..|.+.+.
T Consensus 380 t~LP~~--l--~~sL~~LdLs~N~-L~~LP~sl~~---~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 380 TNLPEN--L--PAALQIMQASRNN-LVRLPESLPH---FRGEGPQPTRIIVEYN 425 (754)
T ss_pred CCCCHh--H--HHHHHHHhhccCC-cccCchhHHH---HhhcCCCccEEEeeCC
Confidence 554431 1 1356666666654 3344321110 0012355566666553
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.44 E-value=5.8e-15 Score=156.05 Aligned_cols=282 Identities=22% Similarity=0.251 Sum_probs=197.5
Q ss_pred ccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cccccCccccc
Q 047700 270 KNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLEKLE 348 (629)
Q Consensus 270 ~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~ 348 (629)
..+++|....|.+..+..... ..+|+++++++|.++.+|++++.+.+|..|.+.+|.+.. |..+..+.+|+
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~--------p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~ 290 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPV--------PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLV 290 (1081)
T ss_pred cchheeeeccCcceeeccccc--------cccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHH
Confidence 356666666666553222111 678899999999999999889999999999999998877 67788888999
Q ss_pred eeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCcc-CceEEeccccccccccCCCcccccccccccCcc
Q 047700 349 NLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQ-LEELYMGNTFVKWEFEGKEGGAEASATFVFPKV 427 (629)
Q Consensus 349 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~ 427 (629)
+|.+..|.++.+|.....++.|++|++..| .+..+|...+..+.. |+.|+.+.+.+...... --..
T Consensus 291 ~l~~~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~------------~e~~ 357 (1081)
T KOG0618|consen 291 SLSAAYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY------------EENN 357 (1081)
T ss_pred HHHhhhhhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccc------------cchh
Confidence 999999999988888888899999999887 788888765555553 77777666654321100 0012
Q ss_pred ccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCcc
Q 047700 428 ISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKN 507 (629)
Q Consensus 428 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~ 507 (629)
...|+.|.+.+|.+.+-+.- +...+.+|+.|.++++.-..+.... ..+++.|+. |+|++ ++++.
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p--~l~~~~hLKVLhLsyNrL~~fpas~-----------~~kle~Lee--L~LSG-NkL~~ 421 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFP--VLVNFKHLKVLHLSYNRLNSFPASK-----------LRKLEELEE--LNLSG-NKLTT 421 (1081)
T ss_pred hHHHHHHHHhcCcccccchh--hhccccceeeeeecccccccCCHHH-----------HhchHHhHH--Hhccc-chhhh
Confidence 35678888888888754321 1356778888888887544433221 345566777 88888 78888
Q ss_pred ccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceeccCCCeeec-CCCceeeecCCC
Q 047700 508 LVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKF-PSLEDLFVIDCP 586 (629)
Q Consensus 508 l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-p~L~~L~i~~c~ 586 (629)
++ ..+..++.|+.|...+|. +...|... .+|.|+.+++++ .+|+.+.. ....- |+|++|++++++
T Consensus 422 Lp--~tva~~~~L~tL~ahsN~-l~~fPe~~--------~l~qL~~lDlS~-N~L~~~~l--~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 422 LP--DTVANLGRLHTLRAHSNQ-LLSFPELA--------QLPQLKVLDLSC-NNLSEVTL--PEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hh--HHHHhhhhhHHHhhcCCc-eeechhhh--------hcCcceEEeccc-chhhhhhh--hhhCCCcccceeeccCCc
Confidence 86 557788999999888776 66666332 589999999985 77777655 22333 799999999988
Q ss_pred CccccCCCCCCchhhHHhh
Q 047700 587 KVMIFSCGVSSTPRLREVR 605 (629)
Q Consensus 587 ~L~~lp~~~~~l~~L~~l~ 605 (629)
.+.. .-..++.++.+.
T Consensus 488 ~l~~---d~~~l~~l~~l~ 503 (1081)
T KOG0618|consen 488 RLVF---DHKTLKVLKSLS 503 (1081)
T ss_pred cccc---chhhhHHhhhhh
Confidence 7432 224444444444
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=6.2e-15 Score=125.48 Aligned_cols=134 Identities=31% Similarity=0.409 Sum_probs=124.0
Q ss_pred ccccccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC---ccc
Q 047700 264 LNNDVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD---ISI 340 (629)
Q Consensus 264 ~~~~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~---~~~ 340 (629)
+....++++..|.+.+|.++.+|.++.. ++.|+.|++.-|.+..+|..|+.++-|++|++.+|++.. |..
T Consensus 50 pnia~l~nlevln~~nnqie~lp~~iss-------l~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgn 122 (264)
T KOG0617|consen 50 PNIAELKNLEVLNLSNNQIEELPTSISS-------LPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGN 122 (264)
T ss_pred CcHHHhhhhhhhhcccchhhhcChhhhh-------chhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcc
Confidence 3445688999999999999999998876 999999999999999999999999999999999999877 788
Q ss_pred ccCccccceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEecccccc
Q 047700 341 IGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 341 i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~ 406 (629)
|..+..|+.|.++.|.++-+|..++++++|+.|.+..| .+-.+|.+ ++.++.|++|++++|.+.
T Consensus 123 ff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 123 FFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccceee
Confidence 99999999999999999999999999999999999998 67788998 999999999999999865
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.36 E-value=1.5e-12 Score=145.17 Aligned_cols=304 Identities=23% Similarity=0.243 Sum_probs=183.3
Q ss_pred ccceEEeccCCC--CCCCCCC-CCCCCcchhccCCccEEEecCC-cccccchhhhcccCCcEEEcCCcCCCC-cccccCc
Q 047700 270 KNCSAVSLNDIE--IGVLPKG-LEYPQLEFFWMSKLRGLALSKM-QLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNL 344 (629)
Q Consensus 270 ~~l~~L~l~~~~--~~~lp~~-~~~~~l~~l~~~~L~~L~l~~~-~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l 344 (629)
++++.|-+..+. +..++.. +.. ++.|++|||++| .+.++|.+++.+.+||||+++++.+.. |.++++|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~-------m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~L 617 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRS-------LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNL 617 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhh-------CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHH
Confidence 368888888775 4444432 222 999999999987 456999999999999999999999999 8999999
Q ss_pred cccceeeccCCCC-ccCchhhhcCccccEEeecCCC-CCCccChhhhhcCccCceEEecccccc--ccccC---------
Q 047700 345 EKLENLSLVDSDI-EWLPNEIGELTQLRLLDLSSCW-NLKVIPPNVISKLTQLEELYMGNTFVK--WEFEG--------- 411 (629)
Q Consensus 345 ~~L~~L~l~~~~l-~~lp~~i~~l~~L~~L~l~~~~-~l~~~p~~~i~~l~~L~~L~l~~~~~~--~~~~~--------- 411 (629)
+.|.+||+..+.- ..+|.....|++|++|.+.... ..+..-...+.++.+|+.+........ ....+
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhH
Confidence 9999999999854 3555555669999999998753 111211122455566666655443320 00000
Q ss_pred -CC-cccccccccccCccccCcceEEccCcchhhhcccc---CChhh-hcccceeeeccCCCCceeeccccccCchhhhh
Q 047700 412 -KE-GGAEASATFVFPKVISNLEELKLGGKDITMICQDH---LPKHL-FQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE 485 (629)
Q Consensus 412 -~~-~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~---~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 485 (629)
.. ..............+++|+.|.+.+..+.+..... ..... ++++..+.+..|........
T Consensus 698 ~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~------------ 765 (889)
T KOG4658|consen 698 SLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW------------ 765 (889)
T ss_pred hhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch------------
Confidence 00 00000111112223578888888777765332111 11111 44555555555554443211
Q ss_pred hccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEeccccccee-ccccccccccccccccccccccccccccce
Q 047700 486 LRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEI-ISSEEDVEEDEVVFSRLKWLSLECLESLTS 564 (629)
Q Consensus 486 ~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 564 (629)
....|+|+. |.+..|+.+++.. +....+..++.+.+..+. +... .....+ .|+++..+.+.. +.+.+
T Consensus 766 ~~f~~~L~~--l~l~~~~~~e~~i--~~~k~~~~l~~~i~~f~~-~~~l~~~~~l~------~l~~i~~~~l~~-~~l~~ 833 (889)
T KOG4658|consen 766 LLFAPHLTS--LSLVSCRLLEDII--PKLKALLELKELILPFNK-LEGLRMLCSLG------GLPQLYWLPLSF-LKLEE 833 (889)
T ss_pred hhccCcccE--EEEecccccccCC--CHHHHhhhcccEEecccc-cccceeeecCC------CCceeEecccCc-cchhh
Confidence 246689999 9999999988853 445666666654444333 2222 111111 355555555554 22544
Q ss_pred eccCC--CeeecCCCceeeecCC-CCccccCCC--CCCchhhHHh
Q 047700 565 FCSGN--CTFKFPSLEDLFVIDC-PKVMIFSCG--VSSTPRLREV 604 (629)
Q Consensus 565 ~~~~~--~~~~~p~L~~L~i~~c-~~L~~lp~~--~~~l~~L~~l 604 (629)
+.... ..+.+|.+.++.+.+| +++...|.+ +.....+.++
T Consensus 834 ~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~ 878 (889)
T KOG4658|consen 834 LIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDEL 878 (889)
T ss_pred eehhcCcccccCccccccceeccccceeecCCccceeeEEehhhh
Confidence 44310 1256888999999997 778888876 4444444443
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.22 E-value=1.6e-12 Score=125.19 Aligned_cols=120 Identities=22% Similarity=0.286 Sum_probs=71.2
Q ss_pred eccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccch-hhhcccCCcEEEcCCcCCCC--cccccCccccceeec
Q 047700 276 SLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQ-SVHLLSNLQTLCLDQCVLGD--ISIIGNLEKLENLSL 352 (629)
Q Consensus 276 ~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l 352 (629)
+.++.++.++|..+ ......++|..|+|+.+|+ .|+.+++||.|+|++|.|+. |..|..++.|-.|-+
T Consensus 52 dCr~~GL~eVP~~L---------P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvl 122 (498)
T KOG4237|consen 52 DCRGKGLTEVPANL---------PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVL 122 (498)
T ss_pred EccCCCcccCcccC---------CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHh
Confidence 33444455666544 3455566666666666653 46666666666666666665 455666666555554
Q ss_pred cC-CCCccCch-hhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccc
Q 047700 353 VD-SDIEWLPN-EIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFV 405 (629)
Q Consensus 353 ~~-~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~ 405 (629)
.+ |+|+.+|. .++.|..|+.|.+.-| .+.-++..++..|++|..|.+..|.+
T Consensus 123 yg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 123 YGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred hcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhh
Confidence 44 56666664 3456666666666554 55555555566666666666665543
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.17 E-value=3.7e-12 Score=122.75 Aligned_cols=274 Identities=18% Similarity=0.185 Sum_probs=168.4
Q ss_pred EEecCCcccccchhhhcccCCcEEEcCCcCCCC-c-ccccCccccceeeccCCCCccC-chhhhcCccccEEeecCCCCC
Q 047700 305 LALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-I-SIIGNLEKLENLSLVDSDIEWL-PNEIGELTQLRLLDLSSCWNL 381 (629)
Q Consensus 305 L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l 381 (629)
.+-++-.++++|..+. ..-..+.|..|.|+. | ..|+.+++|+.|||++|.|+.+ |+.+..+.+|..|-+.+++++
T Consensus 51 VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred EEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 3556667777876543 367788999999999 3 5799999999999999999966 778889999999999997799
Q ss_pred CccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchhhhccccCChhhhcccceee
Q 047700 382 KVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLE 461 (629)
Q Consensus 382 ~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~ 461 (629)
+.+|...+++|.+|+.|.+.-|.+.-... ..-..+++|..|.+..|.+..++.+.+ ..+..++.+.
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~------------~al~dL~~l~lLslyDn~~q~i~~~tf--~~l~~i~tlh 194 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQ------------DALRDLPSLSLLSLYDNKIQSICKGTF--QGLAAIKTLH 194 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhH------------HHHHHhhhcchhcccchhhhhhccccc--cchhccchHh
Confidence 99999999999999999988776532111 112235667777777888776655433 2344555555
Q ss_pred eccCCCCcee------------ecccc--ccCchhhhh--------hcc-ccCceeee-EEEecCCCCccccchHHHhcc
Q 047700 462 VVSDKSDNFS------------IGSLQ--RFHNMEKLE--------LRQ-FIQRDIFK-WRVSYCKRLKNLVSSFTAKSL 517 (629)
Q Consensus 462 l~~~~~~~~~------------~~~~~--~~~~L~~L~--------~~~-~~~L~~~~-L~l~~c~~l~~l~~~~~l~~l 517 (629)
+...+...+. +...+ .+..=..+. ... .-.++.++ =..+.|. .....|...+..+
T Consensus 195 lA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~-~d~~cP~~cf~~L 273 (498)
T KOG4237|consen 195 LAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDF-PDSICPAKCFKKL 273 (498)
T ss_pred hhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccC-cCCcChHHHHhhc
Confidence 5544322110 00000 000000000 000 01112200 1112222 2222345667888
Q ss_pred cCcceEEEecccccceecc-ccccccccccccccccccccccccccceeccCCCeeecCCCceeeecCCCCccccCCCCC
Q 047700 518 VHLMKLRIGGCKLMTEIIS-SEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKVMIFSCGVS 596 (629)
Q Consensus 518 ~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~ 596 (629)
|+|+.|++++|. ++.+.. .++ ....++.|.+.. .++..+... ....+..|+.|+++++.--..-|..+.
T Consensus 274 ~~L~~lnlsnN~-i~~i~~~aFe-------~~a~l~eL~L~~-N~l~~v~~~-~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 274 PNLRKLNLSNNK-ITRIEDGAFE-------GAAELQELYLTR-NKLEFVSSG-MFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred ccceEeccCCCc-cchhhhhhhc-------chhhhhhhhcCc-chHHHHHHH-hhhccccceeeeecCCeeEEEeccccc
Confidence 888888888776 444433 222 467778887776 566655431 335567777788877654333344566
Q ss_pred CchhhHHhh
Q 047700 597 STPRLREVR 605 (629)
Q Consensus 597 ~l~~L~~l~ 605 (629)
.+.+|.+|.
T Consensus 344 ~~~~l~~l~ 352 (498)
T KOG4237|consen 344 TLFSLSTLN 352 (498)
T ss_pred ccceeeeee
Confidence 666666655
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=2.5e-11 Score=123.30 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=56.8
Q ss_pred cCCccEEEecCCccc-----ccchhhhcccCCcEEEcCCcCCCC--------cccccCccccceeeccCCCCc-cCchhh
Q 047700 299 MSKLRGLALSKMQLL-----SLPQSVHLLSNLQTLCLDQCVLGD--------ISIIGNLEKLENLSLVDSDIE-WLPNEI 364 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~l~~~~l~~--------~~~i~~l~~L~~L~l~~~~l~-~lp~~i 364 (629)
+.+|++|+++++.++ .+++.+...++|++|+++++.+.. +..+.++++|+.|++++|.+. ..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 455667777776663 344455556667777776665542 123445566666666666554 233334
Q ss_pred hcCcc---ccEEeecCCCCCC----ccChhhhhcC-ccCceEEecccccc
Q 047700 365 GELTQ---LRLLDLSSCWNLK----VIPPNVISKL-TQLEELYMGNTFVK 406 (629)
Q Consensus 365 ~~l~~---L~~L~l~~~~~l~----~~p~~~i~~l-~~L~~L~l~~~~~~ 406 (629)
..+.+ |++|++++|.... .+... +..+ ++|+.|++++|.+.
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCC
Confidence 33333 6666666653211 11111 3444 56666666666543
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.07 E-value=4.6e-11 Score=121.31 Aligned_cols=233 Identities=21% Similarity=0.194 Sum_probs=131.9
Q ss_pred cccceEEeccCCCCCC-----CCCCCCCCCcchhccCCccEEEecCCcccc-------cchhhhcccCCcEEEcCCcCCC
Q 047700 269 LKNCSAVSLNDIEIGV-----LPKGLEYPQLEFFWMSKLRGLALSKMQLLS-------LPQSVHLLSNLQTLCLDQCVLG 336 (629)
Q Consensus 269 ~~~l~~L~l~~~~~~~-----lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~-------lp~~l~~l~~L~~L~l~~~~l~ 336 (629)
...++.+.+.++.+.. ++..+.. .+.++.|+++++.+.. ++..+..+++|++|++++|.+.
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~-------~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRP-------QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhh-------CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 3457788888877632 2222222 5678888888876652 3445677889999999999887
Q ss_pred C--cccccCccc---cceeeccCCCCc-----cCchhhhcC-ccccEEeecCCCCCC----ccChhhhhcCccCceEEec
Q 047700 337 D--ISIIGNLEK---LENLSLVDSDIE-----WLPNEIGEL-TQLRLLDLSSCWNLK----VIPPNVISKLTQLEELYMG 401 (629)
Q Consensus 337 ~--~~~i~~l~~---L~~L~l~~~~l~-----~lp~~i~~l-~~L~~L~l~~~~~l~----~~p~~~i~~l~~L~~L~l~ 401 (629)
. +..+..+.+ |++|++++|+++ .+...+..+ ++|+.|++++|.... .++.. +..+++|++|+++
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~ 173 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLA 173 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECc
Confidence 4 444444444 999999998876 233455666 899999999984331 22222 5667789999998
Q ss_pred cccccccccCCCcccccccccccCccc---cCcceEEccCcchhhhccccCC--hhhhcccceeeeccCCCCceeecccc
Q 047700 402 NTFVKWEFEGKEGGAEASATFVFPKVI---SNLEELKLGGKDITMICQDHLP--KHLFQNLKSLEVVSDKSDNFSIGSLQ 476 (629)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~p~~l---~~L~~L~L~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~ 476 (629)
+|.+.... ...++..+ .+|+.|++++|.+.+.....+. ...+++|++|+++++.........+.
T Consensus 174 ~n~l~~~~-----------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 174 NNGIGDAG-----------IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred CCCCchHH-----------HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 88765311 01122222 4777777777766532211110 12345666776666542221100000
Q ss_pred ccCchhhhhhccccCceeeeEEEecCCCCcccc---chHHHhcccCcceEEEeccc
Q 047700 477 RFHNMEKLELRQFIQRDIFKWRVSYCKRLKNLV---SSFTAKSLVHLMKLRIGGCK 529 (629)
Q Consensus 477 ~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~---~~~~l~~l~~L~~L~l~~c~ 529 (629)
+.+ ....+.|+. |++++|. +++.. -...+..+++|+++++++|.
T Consensus 243 -----~~~-~~~~~~L~~--L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 243 -----SAL-LSPNISLLT--LSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred -----HHH-hccCCCceE--EEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 000 012356666 7766653 22110 11223445666777776665
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.1e-11 Score=119.26 Aligned_cols=137 Identities=21% Similarity=0.247 Sum_probs=64.0
Q ss_pred hcccCCcEEEcCCcCCCCcc---cccCccccceeeccCCCCc---cCchhhhcCccccEEeecCCCCCCccChhhhhcCc
Q 047700 320 HLLSNLQTLCLDQCVLGDIS---IIGNLEKLENLSLVDSDIE---WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLT 393 (629)
Q Consensus 320 ~~l~~L~~L~l~~~~l~~~~---~i~~l~~L~~L~l~~~~l~---~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~ 393 (629)
+++.+|+.+.|+++.+..++ ....|++++.|||+.|-+. .+..-+..|++|+.|+++.|...-......-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 34555555555555555432 3445555556666555333 22233345666666666665322211111122455
Q ss_pred cCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCc
Q 047700 394 QLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDN 469 (629)
Q Consensus 394 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 469 (629)
.|+.|.+++|.+++.. +..+...+++|..|.|..|.. ......+-..+..|++|+++++....
T Consensus 198 ~lK~L~l~~CGls~k~-----------V~~~~~~fPsl~~L~L~~N~~--~~~~~~~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKD-----------VQWILLTFPSLEVLYLEANEI--ILIKATSTKILQTLQELDLSNNNLID 260 (505)
T ss_pred hhheEEeccCCCCHHH-----------HHHHHHhCCcHHHhhhhcccc--cceecchhhhhhHHhhccccCCcccc
Confidence 6667777777665432 112333345556666555531 01111222334455666665554433
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=1e-09 Score=98.37 Aligned_cols=106 Identities=24% Similarity=0.298 Sum_probs=39.6
Q ss_pred cCCccEEEecCCcccccchhhh-cccCCcEEEcCCcCCCCcccccCccccceeeccCCCCccCchhh-hcCccccEEeec
Q 047700 299 MSKLRGLALSKMQLLSLPQSVH-LLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEI-GELTQLRLLDLS 376 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~ 376 (629)
...++.|+|++|.|+.+. .++ .+.+|+.|++++|.++.++.+..+++|++|++++|+++.++..+ ..+++|++|+++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 556788888888888764 355 57788889999998888888888888999999999888886655 468889999988
Q ss_pred CCCCCCccCh-hhhhcCccCceEEecccccc
Q 047700 377 SCWNLKVIPP-NVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 377 ~~~~l~~~p~-~~i~~l~~L~~L~l~~~~~~ 406 (629)
+| .+..+.. ..++.+++|+.|++.+|++.
T Consensus 97 ~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 97 NN-KISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CC-cCCChHHhHHHHcCCCcceeeccCCccc
Confidence 87 4433321 22677888888888888764
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=8.3e-11 Score=118.72 Aligned_cols=103 Identities=30% Similarity=0.399 Sum_probs=51.4
Q ss_pred cCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cccccCccccceeeccCCCCccCchhhhcCccccEEeecC
Q 047700 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSS 377 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 377 (629)
+..|++|||+.|++..+|..++.| -|++|-+++|+++. |+.++.+.+|..||.+.|.+..+|..++.+.+|+.|.+..
T Consensus 120 L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred hhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh
Confidence 445555555555555555444332 35555555555554 4455555555555555555555555555555555555555
Q ss_pred CCCCCccChhhhhcCccCceEEeccccc
Q 047700 378 CWNLKVIPPNVISKLTQLEELYMGNTFV 405 (629)
Q Consensus 378 ~~~l~~~p~~~i~~l~~L~~L~l~~~~~ 405 (629)
| ++..+|.+ +..| .|..||+++|.+
T Consensus 199 n-~l~~lp~E-l~~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 199 N-HLEDLPEE-LCSL-PLIRLDFSCNKI 223 (722)
T ss_pred h-hhhhCCHH-HhCC-ceeeeecccCce
Confidence 4 44444444 3322 345555555543
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=7e-09 Score=92.95 Aligned_cols=126 Identities=26% Similarity=0.244 Sum_probs=52.8
Q ss_pred cccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCc-cccc-Cccc
Q 047700 269 LKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDI-SIIG-NLEK 346 (629)
Q Consensus 269 ~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~-~~i~-~l~~ 346 (629)
....+.|++.++.+..+...... +.+|+.|++++|.++.++ .+..+++|++|++++|.++.+ +.+. .+++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~-------l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGAT-------LDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp ------------------S--TT--------TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred ccccccccccccccccccchhhh-------hcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 34678999999998877643222 789999999999999886 488899999999999999996 3453 6899
Q ss_pred cceeeccCCCCccCc--hhhhcCccccEEeecCCCCCCc--cChhhhhcCccCceEEecc
Q 047700 347 LENLSLVDSDIEWLP--NEIGELTQLRLLDLSSCWNLKV--IPPNVISKLTQLEELYMGN 402 (629)
Q Consensus 347 L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~--~p~~~i~~l~~L~~L~l~~ 402 (629)
|+.|++++|+|..+- ..+..+++|+.|++.+|+.... ....++..+++|+.||-..
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 999999999887543 4567899999999999854322 1234578899999998543
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.4e-09 Score=106.78 Aligned_cols=159 Identities=19% Similarity=0.185 Sum_probs=108.1
Q ss_pred cccccceEEeccCCCCCCCCCC--CCCCCcchhccCCccEEEecCCccc---ccchhhhcccCCcEEEcCCcCCCCcc--
Q 047700 267 DVLKNCSAVSLNDIEIGVLPKG--LEYPQLEFFWMSKLRGLALSKMQLL---SLPQSVHLLSNLQTLCLDQCVLGDIS-- 339 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~~--~~~~~l~~l~~~~L~~L~l~~~~~~---~lp~~l~~l~~L~~L~l~~~~l~~~~-- 339 (629)
..+++++.+++.++.+...+.. ... |++++.|||++|-+. .+.+....+++|+.|+++.|.+..|.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~-------~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKI-------LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhh-------CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 4578899999999887766632 222 899999999999665 44456778999999999999877742
Q ss_pred -cccCccccceeeccCCCCc--cCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCccc
Q 047700 340 -IIGNLEKLENLSLVDSDIE--WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGA 416 (629)
Q Consensus 340 -~i~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 416 (629)
.-..+++|+.|.++.|+++ .+-.....+|+|+.|++..|..+...... ...+..|+.|++++|.+......
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~~----- 264 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQG----- 264 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccccccc-----
Confidence 2336789999999999887 22233456889999999888433222221 34567788888888876542211
Q ss_pred ccccccccCccccCcceEEccCcchhhh
Q 047700 417 EASATFVFPKVISNLEELKLGGKDITMI 444 (629)
Q Consensus 417 ~~~~~~~~p~~l~~L~~L~L~~~~~~~~ 444 (629)
..-..++.|+.|.++.+++..+
T Consensus 265 ------~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 265 ------YKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred ------cccccccchhhhhccccCcchh
Confidence 0122345666666666666544
No 31
>PF05729 NACHT: NACHT domain
Probab=98.74 E-value=3.9e-08 Score=89.20 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=68.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCeEEEEEeCCCcCH---HHHHHHHHHHhCCcccCCCHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKL----FDQVVFVLKSSTANV---EKIQDEIAEQLGLELCKGTESERARTLFDQ 73 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~---~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~ 73 (629)
++.|+|.+|+||||++++++.+...... +...+|++.+...+. ..+...|.......... ..+ .+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~---~~~~~ 76 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP--IEE---LLQEL 76 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh--hHH---HHHHH
Confidence 5789999999999999999999876544 345667766543332 23444444443221111 111 12222
Q ss_pred H-cCCcEEEEEcCCCCCcc---------hhhhhhcc-CC-CCCCcEEEEeeccccc
Q 047700 74 L-WKEKILIILDDIWANID---------LETVGILF-GG-AHRGCKILLTPRYQNV 117 (629)
Q Consensus 74 l-~~k~~LlVlDdv~~~~~---------~~~l~~~~-~~-~~~gs~ilvTTR~~~v 117 (629)
+ +.+++++|+|++++... +..+...+ .. ..++.+++||+|....
T Consensus 77 ~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 77 LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 2 37899999999986532 22222222 22 3578999999997766
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=2.7e-09 Score=99.56 Aligned_cols=132 Identities=21% Similarity=0.222 Sum_probs=100.5
Q ss_pred cCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccccceeeccCCCCccCchhhhcCccccEEeecCC
Q 047700 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSC 378 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 378 (629)
...|+.|||++|.|+.+-+++.-.+.+++|++++|.+..+..+..+++|..||+++|.++++..+=.+|-|.++|.++.|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 56788899999999888888888899999999999998888888999999999999988877655567888899999887
Q ss_pred CCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchhhh
Q 047700 379 WNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMI 444 (629)
Q Consensus 379 ~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~ 444 (629)
.++.+.. ++++-+|..|++.+|.+..-.. .. -...++.|+.+.|.+|.+..+
T Consensus 363 -~iE~LSG--L~KLYSLvnLDl~~N~Ie~lde----------V~-~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 363 -KIETLSG--LRKLYSLVNLDLSSNQIEELDE----------VN-HIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred -hHhhhhh--hHhhhhheeccccccchhhHHH----------hc-ccccccHHHHHhhcCCCcccc
Confidence 6666654 7888889999988887642111 00 111245566666777776643
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=1.8e-09 Score=100.72 Aligned_cols=131 Identities=26% Similarity=0.300 Sum_probs=111.4
Q ss_pred cccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCccccc-Ccc
Q 047700 267 DVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIG-NLE 345 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~-~l~ 345 (629)
+.|+.+..+++++|.+..+..+... .+.+++|++++|.+..+-. +..+++|+.|+|++|.+.....+. ++-
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL-------~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLG 352 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKL-------APKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLG 352 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhh-------ccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhc
Confidence 5678899999999999999988777 8999999999999987765 888999999999999988865544 788
Q ss_pred ccceeeccCCCCccCchhhhcCccccEEeecCCCCCCccC-hhhhhcCccCceEEeccccccc
Q 047700 346 KLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIP-PNVISKLTQLEELYMGNTFVKW 407 (629)
Q Consensus 346 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p-~~~i~~l~~L~~L~l~~~~~~~ 407 (629)
++++|.+.+|.++.+ .++++|.+|..|++++| +++.+. ...|++++-|+.+.+.+|++..
T Consensus 353 NIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred CEeeeehhhhhHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCccc
Confidence 899999999988877 46889999999999998 555443 2348999999999999998754
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=1.6e-08 Score=105.77 Aligned_cols=174 Identities=30% Similarity=0.371 Sum_probs=122.8
Q ss_pred ccceEEeccCCCCCCCCCCCCCCCcchhccC-CccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cccccCcccc
Q 047700 270 KNCSAVSLNDIEIGVLPKGLEYPQLEFFWMS-KLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLEKL 347 (629)
Q Consensus 270 ~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~-~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~~L 347 (629)
+.+..+.+.++.+..++..... +. +|+.|++++|++..+|..+..+++|+.|++++|.+.. +...+.++.|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~-------~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L 188 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGL-------LKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL 188 (394)
T ss_pred cceeEEecCCcccccCcccccc-------chhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhh
Confidence 5678888888888888876654 43 7888888888888887778888888888888888888 4444488888
Q ss_pred ceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCcc
Q 047700 348 ENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKV 427 (629)
Q Consensus 348 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~ 427 (629)
+.|+++++.+..+|..+..+..|++|.+++|. ....+.. +.++.++..+.+.++.+.... .....
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~~~~-------------~~~~~ 253 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLEDLP-------------ESIGN 253 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceeeecc-------------chhcc
Confidence 88888888888888877777778888888874 3333333 677888887777766543210 12233
Q ss_pred ccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCc
Q 047700 428 ISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDN 469 (629)
Q Consensus 428 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 469 (629)
+.+++.|+++.|.++++.. .....+++.|++.+.....
T Consensus 254 l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 254 LSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccccceecccccccccccc----ccccCccCEEeccCccccc
Confidence 4567788888888775532 2345567777776654443
No 35
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.69 E-value=5.3e-08 Score=96.80 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=62.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc--CHHHHHHHHHHHhCCcccCCCHHH------HHHHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA--NVEKIQDEIAEQLGLELCKGTESE------RARTLFDQ 73 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~------~~~~l~~~ 73 (629)
.+|+|.+|+||||||+.||++...+ ||+.++||.++..+ ++.++++.|...+-.......... .+-...++
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~ 250 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKR 250 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999876 89999999999888 889999988732211111111111 11122222
Q ss_pred H--cCCcEEEEEcCCCC
Q 047700 74 L--WKEKILIILDDIWA 88 (629)
Q Consensus 74 l--~~k~~LlVlDdv~~ 88 (629)
+ .|++++|++|++..
T Consensus 251 ~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 251 LVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHcCCCEEEEEEChHH
Confidence 2 48999999999953
No 36
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.66 E-value=7.4e-08 Score=92.04 Aligned_cols=87 Identities=16% Similarity=0.106 Sum_probs=61.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC--cCHHHHHHHHHHHhCCcccCCCHHH-------HHHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSST--ANVEKIQDEIAEQLGLELCKGTESE-------RARTLFD 72 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~-------~~~~l~~ 72 (629)
++|+|.+|+|||||++++|++...+ +|+.++||.++.. +++.++++.|...+-.......... .......
T Consensus 19 ~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~ 97 (249)
T cd01128 19 GLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKR 97 (249)
T ss_pred EEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999998766 8999999997766 8999999999333211111111111 1122222
Q ss_pred H-HcCCcEEEEEcCCCCC
Q 047700 73 Q-LWKEKILIILDDIWAN 89 (629)
Q Consensus 73 ~-l~~k~~LlVlDdv~~~ 89 (629)
. -.|+++++++|++..-
T Consensus 98 ~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 98 LVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHCCCCEEEEEECHHHh
Confidence 2 2389999999999543
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=2.8e-09 Score=107.96 Aligned_cols=130 Identities=28% Similarity=0.386 Sum_probs=95.3
Q ss_pred cccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cccccCcc
Q 047700 267 DVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLE 345 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~ 345 (629)
..+..+..++++.|.+..+|..+. .--|++|.+++|+++.+|..++.+..|..|+.+.|.+.. |+.++.+.
T Consensus 118 ~~L~~lt~l~ls~NqlS~lp~~lC--------~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~ 189 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLSHLPDGLC--------DLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT 189 (722)
T ss_pred hhhhHHHHhhhccchhhcCChhhh--------cCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHH
Confidence 345566667777777777776554 345777778888888777777777777888888877777 67777788
Q ss_pred ccceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccc
Q 047700 346 KLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKW 407 (629)
Q Consensus 346 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~ 407 (629)
.|+.|+++.|.+..+|..+..| .|..||++.| ++..+|.. |.+|+.|++|-|.+|.+..
T Consensus 190 slr~l~vrRn~l~~lp~El~~L-pLi~lDfScN-kis~iPv~-fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 190 SLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHHHHHhhhhhhhCCHHHhCC-ceeeeecccC-ceeecchh-hhhhhhheeeeeccCCCCC
Confidence 8888888887777777777754 4777777765 77777776 7788888888877777653
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.7e-09 Score=99.58 Aligned_cols=183 Identities=22% Similarity=0.199 Sum_probs=108.0
Q ss_pred CCcEEEcCCcCCCC---cccccCccccceeeccCCCCc-cCchhhhcCccccEEeecCCCCCCccChh-hhhcCccCceE
Q 047700 324 NLQTLCLDQCVLGD---ISIIGNLEKLENLSLVDSDIE-WLPNEIGELTQLRLLDLSSCWNLKVIPPN-VISKLTQLEEL 398 (629)
Q Consensus 324 ~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~-~i~~l~~L~~L 398 (629)
.|++|||+...++. -.-+..+.+|+.|.+.++++. .+...|.+-.+|+.|+++.|..++..... .+.+++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 58888988887766 244567788888888888776 45566777788888888888776655432 24677888888
Q ss_pred EeccccccccccCCCcccccccccccCccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeecccccc
Q 047700 399 YMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRF 478 (629)
Q Consensus 399 ~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 478 (629)
++++|........ .+.. ..-++|..|.++++..+-..
T Consensus 266 NlsWc~l~~~~Vt-----------v~V~-------------------------hise~l~~LNlsG~rrnl~~------- 302 (419)
T KOG2120|consen 266 NLSWCFLFTEKVT-----------VAVA-------------------------HISETLTQLNLSGYRRNLQK------- 302 (419)
T ss_pred CchHhhccchhhh-----------HHHh-------------------------hhchhhhhhhhhhhHhhhhh-------
Confidence 8888865321100 0000 11234555555554332211
Q ss_pred CchhhhhhccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceecccccccccccccccccccccccc
Q 047700 479 HNMEKLELRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLEC 558 (629)
Q Consensus 479 ~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 558 (629)
.++..| ...+|+|.. |+|+.|..++. .-+..+-+++.|++|.++.|+.+..-.....+ ..|+|.+|++.+
T Consensus 303 sh~~tL-~~rcp~l~~--LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~------s~psl~yLdv~g 372 (419)
T KOG2120|consen 303 SHLSTL-VRRCPNLVH--LDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELN------SKPSLVYLDVFG 372 (419)
T ss_pred hHHHHH-HHhCCceee--eccccccccCc-hHHHHHHhcchheeeehhhhcCCChHHeeeec------cCcceEEEEecc
Confidence 023333 455667777 77777766665 23344556777777777777644321111111 456666666655
Q ss_pred c
Q 047700 559 L 559 (629)
Q Consensus 559 ~ 559 (629)
|
T Consensus 373 ~ 373 (419)
T KOG2120|consen 373 C 373 (419)
T ss_pred c
Confidence 5
No 39
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.55 E-value=2.6e-07 Score=80.08 Aligned_cols=112 Identities=26% Similarity=0.306 Sum_probs=77.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcC---CCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccC-CCHHHHHHHHHHHHcC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEK---LFDQVVFVLKSSTANVEKIQDEIAEQLGLELCK-GTESERARTLFDQLWK 76 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~~ 76 (629)
++.|+|.+|+|||++++++.++..... .-..++|+.+....+...+.+.|+..++..... .+..+..+.+.+.+..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 478999999999999999998864311 134466999877779999999999999877555 4566777888888875
Q ss_pred Cc-EEEEEcCCCCC-c--chhhhhhccCCCCCCcEEEEeecc
Q 047700 77 EK-ILIILDDIWAN-I--DLETVGILFGGAHRGCKILLTPRY 114 (629)
Q Consensus 77 k~-~LlVlDdv~~~-~--~~~~l~~~~~~~~~gs~ilvTTR~ 114 (629)
.+ .+||+|+++.- . .++.+.. +.+ ..+.+|++.-+.
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 54 59999999654 2 1223322 223 556677766654
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.52 E-value=3.8e-09 Score=103.21 Aligned_cols=286 Identities=19% Similarity=0.145 Sum_probs=171.7
Q ss_pred CccEEEecCCccc---ccchhhhcccCCcEEEcCCcC-CCC--ccccc-CccccceeeccCC-CCcc--CchhhhcCccc
Q 047700 301 KLRGLALSKMQLL---SLPQSVHLLSNLQTLCLDQCV-LGD--ISIIG-NLEKLENLSLVDS-DIEW--LPNEIGELTQL 370 (629)
Q Consensus 301 ~L~~L~l~~~~~~---~lp~~l~~l~~L~~L~l~~~~-l~~--~~~i~-~l~~L~~L~l~~~-~l~~--lp~~i~~l~~L 370 (629)
.|+.|.++|+.-. .+-....+++++.+|.+.+|. +++ ..++. .+++|++|++..| .++. +-.....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5677788877533 444456778899999998885 333 23333 6788999999886 4552 22233468899
Q ss_pred cEEeecCCCCCCccChh-hhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEcc-Ccchhhhcccc
Q 047700 371 RLLDLSSCWNLKVIPPN-VISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLG-GKDITMICQDH 448 (629)
Q Consensus 371 ~~L~l~~~~~l~~~p~~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~-~~~~~~~~~~~ 448 (629)
.+|+++.|..+..-... ...+.+.++.+.+.||.-.... .+..+......+..+++. .+.+++.....
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le----------~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE----------ALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH----------HHHHHhccChHhhccchhhhccccchHHHH
Confidence 99999998766542211 1345666777766666422100 011122222334444432 23333221111
Q ss_pred CChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecc
Q 047700 449 LPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGC 528 (629)
Q Consensus 449 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c 528 (629)
+ .-.+..|+.|..++|....+.+ +..| ....++|+. +.+.+|..+++..-...-.+++.|+.|++.+|
T Consensus 289 i-~~~c~~lq~l~~s~~t~~~d~~--------l~aL-g~~~~~L~~--l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 289 I-ACGCHALQVLCYSSCTDITDEV--------LWAL-GQHCHNLQV--LELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred H-hhhhhHhhhhcccCCCCCchHH--------HHHH-hcCCCceEE--EeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 1 2346678888888887655431 2233 456689999 99999988777643333457889999999888
Q ss_pred cccceeccccccccccccccccccccccccccccceecc---CCCeeecCCCceeeecCCCCcccc-CCCCCCchhhHHh
Q 047700 529 KLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCS---GNCTFKFPSLEDLFVIDCPKVMIF-SCGVSSTPRLREV 604 (629)
Q Consensus 529 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~~p~L~~L~i~~c~~L~~l-p~~~~~l~~L~~l 604 (629)
.....-... +.....|.|+.|+++.|...++-.. ......+..|+.+.+.+||.++.- -..+..++.|+.|
T Consensus 357 ~~~~d~tL~-----sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri 431 (483)
T KOG4341|consen 357 GLITDGTLA-----SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERI 431 (483)
T ss_pred ceehhhhHh-----hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccccee
Confidence 755443111 1123689999999998877665411 114466778888889999875532 1235566677776
Q ss_pred hhccCCCccc
Q 047700 605 RKNWGLDKGC 614 (629)
Q Consensus 605 ~~~~~~~~~~ 614 (629)
+ .++|....
T Consensus 432 ~-l~~~q~vt 440 (483)
T KOG4341|consen 432 E-LIDCQDVT 440 (483)
T ss_pred e-eechhhhh
Confidence 6 55665433
No 41
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.50 E-value=1.4e-06 Score=85.95 Aligned_cols=92 Identities=25% Similarity=0.313 Sum_probs=62.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHH-----c
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQL-----W 75 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-----~ 75 (629)
++.|+|.+|+||||+|+.+++...... . .++|+ +....+..++++.|+..++.........+....+.+.+ .
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 368999999999999999998876321 1 12343 33455778899999988876544443333334444333 5
Q ss_pred CCcEEEEEcCCCCCc--chhhh
Q 047700 76 KEKILIILDDIWANI--DLETV 95 (629)
Q Consensus 76 ~k~~LlVlDdv~~~~--~~~~l 95 (629)
+++.++|+||++... .++.+
T Consensus 122 ~~~~vliiDe~~~l~~~~~~~l 143 (269)
T TIGR03015 122 GKRALLVVDEAQNLTPELLEEL 143 (269)
T ss_pred CCCeEEEEECcccCCHHHHHHH
Confidence 788999999998763 34444
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=3e-08 Score=92.71 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=59.2
Q ss_pred hcccCcceEEEecccccceeccccccccccccccccccccccccccccceeccCCCeeecCCCceeeecCCCCccccCCC
Q 047700 515 KSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKVMIFSCG 594 (629)
Q Consensus 515 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~ 594 (629)
.-||++..+.+++|+ +....... +...||.+-.|.+.. .++.+|...++...||+|..|.+.+.|-...+-.+
T Consensus 196 r~Fpnv~sv~v~e~P-lK~~s~ek-----~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~ 268 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGP-LKTESSEK-----GSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGG 268 (418)
T ss_pred hhcccchheeeecCc-ccchhhcc-----cCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCC
Confidence 447888888888887 33222211 112577777777776 67777777667888999999999988877766544
Q ss_pred ------CCCchhhHHhhh
Q 047700 595 ------VSSTPRLREVRK 606 (629)
Q Consensus 595 ------~~~l~~L~~l~~ 606 (629)
|+++++++.|..
T Consensus 269 err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 269 ERRFLLIARLTKVQVLNG 286 (418)
T ss_pred cceEEEEeeccceEEecC
Confidence 677888877763
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=8.2e-09 Score=96.38 Aligned_cols=106 Identities=22% Similarity=0.229 Sum_probs=80.7
Q ss_pred cCCccEEEecCCccc--ccchhhhcccCCcEEEcCCcCCCCc--ccccCccccceeeccCC-CCccC--chhhhcCcccc
Q 047700 299 MSKLRGLALSKMQLL--SLPQSVHLLSNLQTLCLDQCVLGDI--SIIGNLEKLENLSLVDS-DIEWL--PNEIGELTQLR 371 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~l~~~--~~i~~l~~L~~L~l~~~-~l~~l--p~~i~~l~~L~ 371 (629)
-+.|++|||+...++ .+...++.|.+|+-|++.++.+.++ ..|.+-.+|+.|+++.| ++++. .--+.+++.|.
T Consensus 184 rsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 184 RSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 346899999998887 5566688899999999999999984 67888899999999998 46633 23457899999
Q ss_pred EEeecCCCCCCccChhhhhcC-ccCceEEecccc
Q 047700 372 LLDLSSCWNLKVIPPNVISKL-TQLEELYMGNTF 404 (629)
Q Consensus 372 ~L~l~~~~~l~~~p~~~i~~l-~~L~~L~l~~~~ 404 (629)
.|+++.|......-..++.+. ++|..|+++|+.
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 999999955544433223333 468888888874
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.46 E-value=4.4e-07 Score=99.69 Aligned_cols=101 Identities=24% Similarity=0.403 Sum_probs=57.4
Q ss_pred ccEEEecCCccc-ccchhhhcccCCcEEEcCCcCCCC--cccccCccccceeeccCCCCc-cCchhhhcCccccEEeecC
Q 047700 302 LRGLALSKMQLL-SLPQSVHLLSNLQTLCLDQCVLGD--ISIIGNLEKLENLSLVDSDIE-WLPNEIGELTQLRLLDLSS 377 (629)
Q Consensus 302 L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~ 377 (629)
++.|+|++|.+. .+|..++.+++|++|+|++|.+.. |+.++.+++|+.|++++|+++ .+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455666666655 455556666666666666666553 345666666666666666655 4555666666666666666
Q ss_pred CCCCCccChhhhhc-CccCceEEeccc
Q 047700 378 CWNLKVIPPNVISK-LTQLEELYMGNT 403 (629)
Q Consensus 378 ~~~l~~~p~~~i~~-l~~L~~L~l~~~ 403 (629)
|...+.+|.. ++. +.++..+++.+|
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCC
Confidence 5444455554 333 234445555544
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=3.3e-07 Score=67.26 Aligned_cols=57 Identities=33% Similarity=0.424 Sum_probs=35.1
Q ss_pred CCccEEEecCCcccccch-hhhcccCCcEEEcCCcCCCC--cccccCccccceeeccCCC
Q 047700 300 SKLRGLALSKMQLLSLPQ-SVHLLSNLQTLCLDQCVLGD--ISIIGNLEKLENLSLVDSD 356 (629)
Q Consensus 300 ~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~ 356 (629)
++|++|++++|+++.+|. .|..+++|++|++++|.+.. +..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356677777777666653 45666666666666666655 2345566666666666654
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.39 E-value=4.1e-07 Score=95.23 Aligned_cols=103 Identities=34% Similarity=0.520 Sum_probs=66.8
Q ss_pred cCCccEEEecCCcccccchhhhccc-CCcEEEcCCcCCCCc-ccccCccccceeeccCCCCccCchhhhcCccccEEeec
Q 047700 299 MSKLRGLALSKMQLLSLPQSVHLLS-NLQTLCLDQCVLGDI-SIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLS 376 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp~~l~~l~-~L~~L~l~~~~l~~~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 376 (629)
.+.++.|++.++.+..+|.....+. +|+.|+++++.+... ..++.+++|+.|++++|+++.+|...+.+++|+.|+++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 4556667777777776666555553 677777777766663 56666777777777777777666666566677777776
Q ss_pred CCCCCCccChhhhhcCccCceEEeccc
Q 047700 377 SCWNLKVIPPNVISKLTQLEELYMGNT 403 (629)
Q Consensus 377 ~~~~l~~~p~~~i~~l~~L~~L~l~~~ 403 (629)
+| .+..+|.. +..+..|++|.+++|
T Consensus 195 ~N-~i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 195 GN-KISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred CC-ccccCchh-hhhhhhhhhhhhcCC
Confidence 65 56666654 344555666666666
No 47
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.39 E-value=8.7e-06 Score=87.47 Aligned_cols=227 Identities=17% Similarity=0.211 Sum_probs=141.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCcccCCCH--------------HH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSST-ANVEKIQDEIAEQLGLELCKGTE--------------SE 65 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~--------------~~ 65 (629)
++.|..++|.|||||+...+.... + =..+.|+..+++ -|...+..-++..++...+...+ ..
T Consensus 39 L~li~APAGfGKttl~aq~~~~~~-~--~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~ 115 (894)
T COG2909 39 LILISAPAGFGKTTLLAQWRELAA-D--GAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLES 115 (894)
T ss_pred EEEEeCCCCCcHHHHHHHHHHhcC-c--ccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHH
Confidence 367899999999999999887332 2 456889998664 57888888888888643332221 12
Q ss_pred HHHHHHHHHc--CCcEEEEEcCCCCCc--c-hhhhhhccCCCCCCcEEEEeeccccccccccc-----------------
Q 047700 66 RARTLFDQLW--KEKILIILDDIWANI--D-LETVGILFGGAHRGCKILLTPRYQNVLVSEMH----------------- 123 (629)
Q Consensus 66 ~~~~l~~~l~--~k~~LlVlDdv~~~~--~-~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~~~----------------- 123 (629)
..+.+...|. .++..+||||-.-.. . -..+...+.....+-.++||||+.--.....-
T Consensus 116 l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~ 195 (894)
T COG2909 116 LLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFD 195 (894)
T ss_pred HHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCC
Confidence 3445555555 568999999976442 1 22333334455678899999999876531100
Q ss_pred --------------------CC--CCChHHHHHHHHHHhhccC--Ccchhhhh------------hhhccccccCchHHH
Q 047700 124 --------------------SK--NKPLAEWKDALQKLRSSAG--KLDALVYS------------SIELSYNYLIDQVVK 167 (629)
Q Consensus 124 --------------------l~--~~~~~~w~~~~~~~~~~~~--~~~~~i~~------------~l~~sy~~L~~~~~k 167 (629)
+. -...+.|-..++-..-... ++...... ..+--++.||++ ++
T Consensus 196 ~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~~-l~ 274 (894)
T COG2909 196 TEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYLVEEVLDRLPPE-LR 274 (894)
T ss_pred hHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHHHHHHHhcCCHH-HH
Confidence 10 0144566665555522222 11111111 122245888988 88
Q ss_pred HHHHhhcccCCCCCCCHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHhhcCcccc--cCCCCceehhHHHHHHHHhh
Q 047700 168 SAFLLCGLLKQPYDAPVMDLLKYGMGLGLFEGIYTMQERRDKVYALVHRLKDSCLLLD--SHSEDWFSMHDIVRDVSISI 245 (629)
Q Consensus 168 ~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~i~~L~~~~ll~~--~~~~~~~~mhd~~~~l~~~~ 245 (629)
..+.-|+++++ +. .+|+..-. .++.+.+++++|..++++.. .+....|+.|.+..|+-...
T Consensus 275 ~FLl~~svl~~-f~---~eL~~~Lt-------------g~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r 337 (894)
T COG2909 275 DFLLQTSVLSR-FN---DELCNALT-------------GEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQR 337 (894)
T ss_pred HHHHHHHhHHH-hh---HHHHHHHh-------------cCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhh
Confidence 88888888874 11 23332211 13456678999999998863 25677899999999998766
Q ss_pred hcc
Q 047700 246 ASR 248 (629)
Q Consensus 246 ~~~ 248 (629)
...
T Consensus 338 ~~~ 340 (894)
T COG2909 338 LQR 340 (894)
T ss_pred hcc
Confidence 554
No 48
>PF13173 AAA_14: AAA domain
Probab=98.38 E-value=9.2e-07 Score=76.13 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=68.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKIL 80 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~L 80 (629)
++.|.|+-|+|||||++.++.+.. ....+++++............+ ..+.+.+....++.+
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~ 64 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELIKPGKKY 64 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhhccCCcE
Confidence 578999999999999999988765 2455667765443221110000 122333333347888
Q ss_pred EEEcCCCCCcchhhhhhccCCCCCCcEEEEeecccccc
Q 047700 81 IILDDIWANIDLETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 81 lVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
++||+++...+|......+.+..+..+|++|+......
T Consensus 65 i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 65 IFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred EEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHH
Confidence 99999999988988777766555678999999987765
No 49
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.36 E-value=1.7e-06 Score=86.77 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=62.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC--cCHHHHHHHHHHHhCCcccCCCHH---HHHH---HHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSST--ANVEKIQDEIAEQLGLELCKGTES---ERAR---TLFDQ 73 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~---~~~~---~l~~~ 73 (629)
++|+|.+|+|||||++.+++....+ +|+..+||.++.. +++.++++.|+..+-......... .... ...++
T Consensus 171 ~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~ 249 (415)
T TIGR00767 171 GLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKR 249 (415)
T ss_pred EEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHH
Confidence 6899999999999999999998765 8999999999855 799999999965442211111111 1111 11222
Q ss_pred H--cCCcEEEEEcCCCCC
Q 047700 74 L--WKEKILIILDDIWAN 89 (629)
Q Consensus 74 l--~~k~~LlVlDdv~~~ 89 (629)
+ .|++++|++|++..-
T Consensus 250 ~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 250 LVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHcCCCeEEEEEChhHH
Confidence 2 389999999999643
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=5.7e-07 Score=65.99 Aligned_cols=57 Identities=37% Similarity=0.587 Sum_probs=25.8
Q ss_pred ccceeeccCCCCccCch-hhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccc
Q 047700 346 KLENLSLVDSDIEWLPN-EIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNT 403 (629)
Q Consensus 346 ~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~ 403 (629)
+|++|++++|+++.+|. .+..+++|++|++++| .+..++...+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 34444444444444442 3344444444444443 334444433444445555544444
No 51
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.28 E-value=8.2e-06 Score=85.34 Aligned_cols=88 Identities=25% Similarity=0.173 Sum_probs=66.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCc-c--cCCCHHHHHHHHHHHHc--C
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLE-L--CKGTESERARTLFDQLW--K 76 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-~--~~~~~~~~~~~l~~~l~--~ 76 (629)
+.|+|..|+|||++++.++++.......-.+++|++....+...++.+|+.++... . ...+..+..+.+.+.+. +
T Consensus 58 ~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (394)
T PRK00411 58 VLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERD 137 (394)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 57999999999999999999987654334566777777778889999999998652 1 22344566677777776 4
Q ss_pred CcEEEEEcCCCCC
Q 047700 77 EKILIILDDIWAN 89 (629)
Q Consensus 77 k~~LlVlDdv~~~ 89 (629)
+..+||||+++..
T Consensus 138 ~~~viviDE~d~l 150 (394)
T PRK00411 138 RVLIVALDDINYL 150 (394)
T ss_pred CEEEEEECCHhHh
Confidence 5689999999864
No 52
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.27 E-value=2.7e-05 Score=91.04 Aligned_cols=222 Identities=16% Similarity=0.172 Sum_probs=123.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCcccC--------------CCHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS-TANVEKIQDEIAEQLGLELCK--------------GTESE 65 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~--------------~~~~~ 65 (629)
++.|+|++|.||||++..+..+ +..++|+++.. +-+...+...++..++..... .....
T Consensus 34 ~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (903)
T PRK04841 34 LVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSS 107 (903)
T ss_pred eEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHH
Confidence 4789999999999999998742 33688999964 446666767776666421110 11122
Q ss_pred HHHHHHHHHc--CCcEEEEEcCCCCCcc--hh-hhhhccCCCCCCcEEEEeecccccccc----------ccc-------
Q 047700 66 RARTLFDQLW--KEKILIILDDIWANID--LE-TVGILFGGAHRGCKILLTPRYQNVLVS----------EMH------- 123 (629)
Q Consensus 66 ~~~~l~~~l~--~k~~LlVlDdv~~~~~--~~-~l~~~~~~~~~gs~ilvTTR~~~v~~~----------~~~------- 123 (629)
....+...+. +.+++|||||+...++ .. .+...+.....+..+|||||...-... ..+
T Consensus 108 ~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~ 187 (903)
T PRK04841 108 LFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFD 187 (903)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCC
Confidence 2333444443 6799999999976531 22 333333344566788899998532210 000
Q ss_pred -------C----C-CCChHHHHH----------HHHHHhhcc---CC------------cchhhhhhhh-ccccccCchH
Q 047700 124 -------S----K-NKPLAEWKD----------ALQKLRSSA---GK------------LDALVYSSIE-LSYNYLIDQV 165 (629)
Q Consensus 124 -------l----~-~~~~~~w~~----------~~~~~~~~~---~~------------~~~~i~~~l~-~sy~~L~~~~ 165 (629)
+ . ..+.+.... .+..+.... .. ....+...+. -.++.||++
T Consensus 188 ~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~- 266 (903)
T PRK04841 188 HQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDYLVEEVLDNVDLE- 266 (903)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHHHHHhcCCHH-
Confidence 1 1 112222221 111110000 00 0112333222 237888988
Q ss_pred HHHHHHhhcccCCCCCCCHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHhhcCcccc-c-CCCCceehhHHHHHHHH
Q 047700 166 VKSAFLLCGLLKQPYDAPVMDLLKYGMGLGLFEGIYTMQERRDKVYALVHRLKDSCLLLD-S-HSEDWFSMHDIVRDVSI 243 (629)
Q Consensus 166 ~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~i~~L~~~~ll~~-~-~~~~~~~mhd~~~~l~~ 243 (629)
.+..+...++++ .++.. +... +... +...+.+++|.+.+++.. . +....|+.|++++++..
T Consensus 267 ~~~~l~~~a~~~---~~~~~-l~~~-----l~~~--------~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~ 329 (903)
T PRK04841 267 TRHFLLRCSVLR---SMNDA-LIVR-----VTGE--------ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLR 329 (903)
T ss_pred HHHHHHHhcccc---cCCHH-HHHH-----HcCC--------CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHH
Confidence 888888888887 33322 2221 1111 112456888888898653 2 23347889999999988
Q ss_pred hhh
Q 047700 244 SIA 246 (629)
Q Consensus 244 ~~~ 246 (629)
...
T Consensus 330 ~~l 332 (903)
T PRK04841 330 HRC 332 (903)
T ss_pred HHH
Confidence 764
No 53
>PLN03150 hypothetical protein; Provisional
Probab=98.27 E-value=2.2e-06 Score=94.23 Aligned_cols=107 Identities=18% Similarity=0.302 Sum_probs=89.7
Q ss_pred cceEEeccCCCCC-CCCCCCCCCCcchhccCCccEEEecCCccc-ccchhhhcccCCcEEEcCCcCCCC--cccccCccc
Q 047700 271 NCSAVSLNDIEIG-VLPKGLEYPQLEFFWMSKLRGLALSKMQLL-SLPQSVHLLSNLQTLCLDQCVLGD--ISIIGNLEK 346 (629)
Q Consensus 271 ~l~~L~l~~~~~~-~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~ 346 (629)
.++.|++.++.+. .+|..+.. +++|+.|+|++|.+. .+|..++.+++|++|+|++|.+.. |+.++++++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~-------L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK-------LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC-------CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 3778899988874 56655544 899999999999998 789899999999999999999986 678999999
Q ss_pred cceeeccCCCCc-cCchhhhcC-ccccEEeecCCCCCCcc
Q 047700 347 LENLSLVDSDIE-WLPNEIGEL-TQLRLLDLSSCWNLKVI 384 (629)
Q Consensus 347 L~~L~l~~~~l~-~lp~~i~~l-~~L~~L~l~~~~~l~~~ 384 (629)
|++|++++|+++ .+|..++.+ .++..+++.+|..+...
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecCCccccCC
Confidence 999999999988 889888763 57788888887544433
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.26 E-value=3.9e-08 Score=102.43 Aligned_cols=130 Identities=21% Similarity=0.215 Sum_probs=103.1
Q ss_pred cccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccC-cc
Q 047700 267 DVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGN-LE 345 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~-l~ 345 (629)
..|..+...+.++|.+..+..++.+ ++.|+.|+|++|+++++- .+..|++|++|||++|.+..++.++. -.
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD~SLql-------l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc 232 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMDESLQL-------LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC 232 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHHHHHHH-------HHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh
Confidence 3566778888888888877777666 899999999999998776 68899999999999999988665552 22
Q ss_pred ccceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccc
Q 047700 346 KLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFV 405 (629)
Q Consensus 346 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~ 405 (629)
+|..|++++|.++.+ .+|.+|.+|+.||+++|-..+.--...++.|..|+.|.+.||.+
T Consensus 233 ~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 233 KLQLLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hheeeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 499999999998887 46889999999999997333222223367888899999999864
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.24 E-value=5.6e-08 Score=95.21 Aligned_cols=261 Identities=16% Similarity=0.091 Sum_probs=159.2
Q ss_pred CCcEEEcCCcCCCC---c-ccccCccccceeeccCCC-Cc--cCchhhhcCccccEEeecCCCCCCccChh-hhhcCccC
Q 047700 324 NLQTLCLDQCVLGD---I-SIIGNLEKLENLSLVDSD-IE--WLPNEIGELTQLRLLDLSSCWNLKVIPPN-VISKLTQL 395 (629)
Q Consensus 324 ~L~~L~l~~~~l~~---~-~~i~~l~~L~~L~l~~~~-l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~-~i~~l~~L 395 (629)
.|+.|.+++|.-.. . ..-.++++++.|++.+|. ++ .+-.--..+++|++|++..|..++..... .....++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 58889999885433 2 234478899999999984 44 22222346899999999999777765433 24578899
Q ss_pred ceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchhhhc-cccCChhhhcccceeeeccCCCCceeecc
Q 047700 396 EELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMIC-QDHLPKHLFQNLKSLEVVSDKSDNFSIGS 474 (629)
Q Consensus 396 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 474 (629)
++|++++|...... .+..+-.+..++..+.++++.-..+- ...+ .....-+.++++..|..+++..
T Consensus 219 ~~lNlSwc~qi~~~----------gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~-~~~~~~i~~lnl~~c~~lTD~~-- 285 (483)
T KOG4341|consen 219 KYLNLSWCPQISGN----------GVQALQRGCKELEKLSLKGCLELELEALLKA-AAYCLEILKLNLQHCNQLTDED-- 285 (483)
T ss_pred HHhhhccCchhhcC----------cchHHhccchhhhhhhhcccccccHHHHHHH-hccChHhhccchhhhccccchH--
Confidence 99999998743220 01123333344444444432110000 0000 1122334455555564444321
Q ss_pred ccccCchhhhhhccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceecccccccccccccccccccc
Q 047700 475 LQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWL 554 (629)
Q Consensus 475 ~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L 554 (629)
+..+ ...+..|+. |..++|..+++.+-....+++++|+.|.+.+|..+........ ....+.|+.+
T Consensus 286 ------~~~i-~~~c~~lq~--l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-----~rn~~~Le~l 351 (483)
T KOG4341|consen 286 ------LWLI-ACGCHALQV--LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML-----GRNCPHLERL 351 (483)
T ss_pred ------HHHH-hhhhhHhhh--hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh-----hcCChhhhhh
Confidence 0000 345678888 9999999988865544556899999999999998766543221 1368999999
Q ss_pred ccccccccceeccCCCeeecCCCceeeecCCCCcccc-----CCCCCCchhhHHhhhccCCCc
Q 047700 555 SLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKVMIF-----SCGVSSTPRLREVRKNWGLDK 612 (629)
Q Consensus 555 ~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~l-----p~~~~~l~~L~~l~~~~~~~~ 612 (629)
.+..|....+-........+|.|+++.+++|...+.- ..+-..+..|+.++ ..+||.
T Consensus 352 ~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lE-L~n~p~ 413 (483)
T KOG4341|consen 352 DLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLE-LDNCPL 413 (483)
T ss_pred cccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceee-ecCCCC
Confidence 9999877655433335678999999999999876543 22223444455555 445553
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=8.1e-07 Score=83.33 Aligned_cols=188 Identities=18% Similarity=0.218 Sum_probs=102.9
Q ss_pred cCCccEEEecCCccc---ccchhhhcccCCcEEEcCCcCCCC-cccc-cCccccceeeccCCCCc--cCchhhhcCcccc
Q 047700 299 MSKLRGLALSKMQLL---SLPQSVHLLSNLQTLCLDQCVLGD-ISII-GNLEKLENLSLVDSDIE--WLPNEIGELTQLR 371 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~---~lp~~l~~l~~L~~L~l~~~~l~~-~~~i-~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~ 371 (629)
++.++.|||.+|.++ ++...+..|++|++|+++.|++.. +... ..+++|++|-+.++.+. ..-.....+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 677777888888776 334446677778888888777766 3443 35567777777776543 3334455666666
Q ss_pred EEeecCCCCCCccC--hhhhhcC-ccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchhhhcccc
Q 047700 372 LLDLSSCWNLKVIP--PNVISKL-TQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDH 448 (629)
Q Consensus 372 ~L~l~~~~~l~~~p--~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~ 448 (629)
.|+++.| +++.+- .+.+... +.+++|+...|.. .+-++-|++.
T Consensus 150 elHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~---------------------------~~w~~~~~l~------ 195 (418)
T KOG2982|consen 150 ELHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPCLE---------------------------QLWLNKNKLS------ 195 (418)
T ss_pred hhhhccc-hhhhhccccccccccchhhhhhhcCCcHH---------------------------HHHHHHHhHH------
Confidence 6666655 111110 0001110 1222222222221 1111122222
Q ss_pred CChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecc
Q 047700 449 LPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGC 528 (629)
Q Consensus 449 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c 528 (629)
..||++..+.+..|+..+...+ .+ ...+|.+.. |.|.. .++.++.....+.+||+|..|++.++
T Consensus 196 ---r~Fpnv~sv~v~e~PlK~~s~e-----k~-----se~~p~~~~--LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 196 ---RIFPNVNSVFVCEGPLKTESSE-----KG-----SEPFPSLSC--LNLGA-NNIDSWASVDALNGFPQLVDLRVSEN 259 (418)
T ss_pred ---hhcccchheeeecCcccchhhc-----cc-----CCCCCcchh--hhhcc-cccccHHHHHHHcCCchhheeeccCC
Confidence 3456777666666643322111 00 223344444 66655 67778777778889999999999998
Q ss_pred cccceecc
Q 047700 529 KLMTEIIS 536 (629)
Q Consensus 529 ~~l~~~~~ 536 (629)
+....+..
T Consensus 260 Pl~d~l~~ 267 (418)
T KOG2982|consen 260 PLSDPLRG 267 (418)
T ss_pred cccccccC
Confidence 87666544
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=3.4e-06 Score=56.64 Aligned_cols=40 Identities=40% Similarity=0.519 Sum_probs=25.3
Q ss_pred CCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcc
Q 047700 300 SKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDIS 339 (629)
Q Consensus 300 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~ 339 (629)
++|++|++++|+++.+|+.+++|++|++|++++|.+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3567777777777777666677777777777776665543
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.11 E-value=3.6e-07 Score=87.70 Aligned_cols=80 Identities=24% Similarity=0.287 Sum_probs=50.2
Q ss_pred cCCccEEEecCCccc-----ccchhhhcccCCcEEEcCCcCCCC-----c-------ccccCccccceeeccCCCCc---
Q 047700 299 MSKLRGLALSKMQLL-----SLPQSVHLLSNLQTLCLDQCVLGD-----I-------SIIGNLEKLENLSLVDSDIE--- 358 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~l~~~~l~~-----~-------~~i~~l~~L~~L~l~~~~l~--- 358 (629)
+..++.|+|+||.+. .+.+.+.+.++|+..++++--... | +.+..+++|++||||.|-+.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 667778888888764 344556667777777777642111 2 12445567778888777443
Q ss_pred --cCchhhhcCccccEEeecCC
Q 047700 359 --WLPNEIGELTQLRLLDLSSC 378 (629)
Q Consensus 359 --~lp~~i~~l~~L~~L~l~~~ 378 (629)
.+-.-+..+..|++|++.+|
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcC
Confidence 22234556777888877777
No 59
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.11 E-value=1.7e-05 Score=70.06 Aligned_cols=103 Identities=14% Similarity=0.038 Sum_probs=59.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKIL 80 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~L 80 (629)
.+.|+|..|+||||+|+.+++..... -..+++++.++..........+... ............++.+
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 87 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF-----------LVRLLFELAEKAKPGV 87 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-----------hHhHHHHhhccCCCeE
Confidence 36799999999999999999987632 2445677665544332222111100 0011112222367889
Q ss_pred EEEcCCCCC-----cchhhhhhccCCC---CCCcEEEEeecccc
Q 047700 81 IILDDIWAN-----IDLETVGILFGGA---HRGCKILLTPRYQN 116 (629)
Q Consensus 81 lVlDdv~~~-----~~~~~l~~~~~~~---~~gs~ilvTTR~~~ 116 (629)
+|+||++.. ..+..+....... ..+..||+||....
T Consensus 88 lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 88 LFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred EEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 999999854 1222222222221 35788888888665
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.10 E-value=8e-08 Score=100.17 Aligned_cols=161 Identities=22% Similarity=0.245 Sum_probs=115.5
Q ss_pred cccccceEEeccCCCCCCCCCCCCC-CCcchhc------------------------cCCccEEEecCCcccccchhhhc
Q 047700 267 DVLKNCSAVSLNDIEIGVLPKGLEY-PQLEFFW------------------------MSKLRGLALSKMQLLSLPQSVHL 321 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~~~~~-~~l~~l~------------------------~~~L~~L~l~~~~~~~lp~~l~~ 321 (629)
..++.+|+|.+.++.+..+-..... ..|+.+. ...|.+.++++|.+..+-.++.-
T Consensus 106 fpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHH
Confidence 3467899999998887543211100 1111111 45678888999999888888888
Q ss_pred ccCCcEEEcCCcCCCCcccccCccccceeeccCCCCccCchh-hhcCccccEEeecCCCCCCccChhhhhcCccCceEEe
Q 047700 322 LSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNE-IGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYM 400 (629)
Q Consensus 322 l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l 400 (629)
++.|+.|+|++|++.....+..|++|++|||++|.+..+|.- ...+ +|+.|.+++| .++.+-. +.+|++|+.||+
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~g--ie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTLRG--IENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhhhh--HHhhhhhhccch
Confidence 999999999999999988999999999999999999988852 2233 3999999997 6666654 889999999999
Q ss_pred ccccccccccCCCcccccccccccCccccCcceEEccCcchh
Q 047700 401 GNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDIT 442 (629)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~ 442 (629)
++|-+.....-. ..-.+..|+.|.|.+|.+-
T Consensus 262 syNll~~hseL~-----------pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 262 SYNLLSEHSELE-----------PLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHhhhhcchhhh-----------HHHHHHHHHHHhhcCCccc
Confidence 999764321100 1112356666667666543
No 61
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.08 E-value=6.1e-07 Score=94.15 Aligned_cols=104 Identities=28% Similarity=0.353 Sum_probs=59.7
Q ss_pred cCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccccceeeccCCCCccCchhhhcCccccEEeecCC
Q 047700 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSC 378 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 378 (629)
+++|..|++.+|.+..+...+..+.+|++|++++|.|+.+..+..++.|+.|++.+|.++.++. +..+++|+.+++++|
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLSYN 172 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-CccchhhhcccCCcc
Confidence 5566666666666665554455566666666666666666666666666666666666655432 334566666666665
Q ss_pred CCCCccCh-hhhhcCccCceEEeccccc
Q 047700 379 WNLKVIPP-NVISKLTQLEELYMGNTFV 405 (629)
Q Consensus 379 ~~l~~~p~-~~i~~l~~L~~L~l~~~~~ 405 (629)
.+..+.. . ...+.+|+.+.+.+|.+
T Consensus 173 -~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 173 -RIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred -hhhhhhhhh-hhhccchHHHhccCCch
Confidence 3333332 1 24555666666665544
No 62
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.06 E-value=8e-07 Score=93.25 Aligned_cols=170 Identities=26% Similarity=0.293 Sum_probs=121.9
Q ss_pred cccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccc
Q 047700 267 DVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEK 346 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~ 346 (629)
..++++..+++.+|.+..+...+.. +++|++|++++|.|+.+.. +..+..|+.|++.+|.+..++.+..++.
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~-------~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~~~~l~~ 163 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSS-------LVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDISGLESLKS 163 (414)
T ss_pred ccccceeeeeccccchhhcccchhh-------hhcchheeccccccccccc-hhhccchhhheeccCcchhccCCccchh
Confidence 4567899999999999888874444 9999999999999998864 7888889999999999999999999999
Q ss_pred cceeeccCCCCccCchh-hhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccC
Q 047700 347 LENLSLVDSDIEWLPNE-IGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFP 425 (629)
Q Consensus 347 L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p 425 (629)
|+.+++++|.++.++.. ...+.+++.+.+.+| .+..+.. +..+..+..+++..|.+....+ ++
T Consensus 164 L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~-------------l~ 227 (414)
T KOG0531|consen 164 LKLLDLSYNRIVDIENDELSELISLEELDLGGN-SIREIEG--LDLLKKLVLLSLLDNKISKLEG-------------LN 227 (414)
T ss_pred hhcccCCcchhhhhhhhhhhhccchHHHhccCC-chhcccc--hHHHHHHHHhhcccccceeccC-------------cc
Confidence 99999999999988764 578899999999987 3333332 3444555555666665432111 11
Q ss_pred cccc--CcceEEccCcchhhhccccCChhhhcccceeeecc
Q 047700 426 KVIS--NLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVS 464 (629)
Q Consensus 426 ~~l~--~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 464 (629)
. .. .|+.++++.|++.....+ ...+..+..|.+..
T Consensus 228 ~-~~~~~L~~l~l~~n~i~~~~~~---~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 228 E-LVMLHLRELYLSGNRISRSPEG---LENLKNLPVLDLSS 264 (414)
T ss_pred c-chhHHHHHHhcccCcccccccc---ccccccccccchhh
Confidence 1 11 267777888877744211 22344455555543
No 63
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.03 E-value=4e-05 Score=79.27 Aligned_cols=88 Identities=27% Similarity=0.291 Sum_probs=63.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcC-CC---CeEEEEEeCCCcCHHHHHHHHHHHhC---Cccc--CCCHHHHHHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEK-LF---DQVVFVLKSSTANVEKIQDEIAEQLG---LELC--KGTESERARTLFD 72 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~-~F---~~~~wv~vs~~~~~~~~~~~i~~~l~---~~~~--~~~~~~~~~~l~~ 72 (629)
+.|+|++|+|||+++++++++..... .. -..+||++....+...++..|+.++. ...+ ..+..+....+.+
T Consensus 43 i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 122 (365)
T TIGR02928 43 VFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYK 122 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHH
Confidence 67999999999999999999864321 11 24568888777778899999999983 3222 2234455566666
Q ss_pred HHc--CCcEEEEEcCCCCC
Q 047700 73 QLW--KEKILIILDDIWAN 89 (629)
Q Consensus 73 ~l~--~k~~LlVlDdv~~~ 89 (629)
.+. +++++||||+++..
T Consensus 123 ~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 123 ELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHhcCCeEEEEECchhhh
Confidence 664 66889999999866
No 64
>PRK06893 DNA replication initiation factor; Validated
Probab=97.88 E-value=2e-05 Score=75.20 Aligned_cols=89 Identities=20% Similarity=0.253 Sum_probs=53.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.++|..|+|||.||+++++....+ ...+.|+.++.. ..... .+.+.++ +.-+|
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~---~~~~~--------------------~~~~~~~-~~dlL 95 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKS---QYFSP--------------------AVLENLE-QQDLV 95 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHh---hhhhH--------------------HHHhhcc-cCCEE
Confidence 5799999999999999999997655 345677766321 00000 1112222 33589
Q ss_pred EEcCCCCC---cchhh-hhhccCC-CCCCcEEEEeecccc
Q 047700 82 ILDDIWAN---IDLET-VGILFGG-AHRGCKILLTPRYQN 116 (629)
Q Consensus 82 VlDdv~~~---~~~~~-l~~~~~~-~~~gs~ilvTTR~~~ 116 (629)
||||+|.. .+|+. +...+.. ...|..++|+|.+..
T Consensus 96 ilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 96 CLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred EEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 99999964 45653 3332321 224566766665443
No 65
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.87 E-value=0.0001 Score=72.86 Aligned_cols=111 Identities=22% Similarity=0.211 Sum_probs=68.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEEE
Q 047700 3 GVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILII 82 (629)
Q Consensus 3 ~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlV 82 (629)
-+||++|+||||||+.|....... |..+|-.++-.+=.++|++... .....|++.+|.
T Consensus 52 Il~GPPG~GKTTlA~liA~~~~~~-------f~~~sAv~~gvkdlr~i~e~a~---------------~~~~~gr~tiLf 109 (436)
T COG2256 52 ILWGPPGTGKTTLARLIAGTTNAA-------FEALSAVTSGVKDLREIIEEAR---------------KNRLLGRRTILF 109 (436)
T ss_pred EEECCCCCCHHHHHHHHHHhhCCc-------eEEeccccccHHHHHHHHHHHH---------------HHHhcCCceEEE
Confidence 479999999999999999876654 4444444433333333333321 112338999999
Q ss_pred EcCCCCC--cchhhhhhccCCCCCCcEEEEeecccccccc--------ccc--CCCCChHHHHHHHHH
Q 047700 83 LDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQNVLVS--------EMH--SKNKPLAEWKDALQK 138 (629)
Q Consensus 83 lDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~--------~~~--l~~~~~~~w~~~~~~ 138 (629)
+|.|..- .|-+.+. +-..+|..|+|.+..++--.. +.. ++..+.++.+.++..
T Consensus 110 lDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 110 LDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred EehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHH
Confidence 9999754 3333333 334678888887666553211 111 555577777666666
No 66
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=5.7e-06 Score=90.71 Aligned_cols=104 Identities=25% Similarity=0.341 Sum_probs=66.2
Q ss_pred cccceEEeccCCCC--CCCCCCCCCCCcchhccCCccEEEecCCccc--ccchhhhcccCCcEEEcCCcCCCCcccccCc
Q 047700 269 LKNCSAVSLNDIEI--GVLPKGLEYPQLEFFWMSKLRGLALSKMQLL--SLPQSVHLLSNLQTLCLDQCVLGDISIIGNL 344 (629)
Q Consensus 269 ~~~l~~L~l~~~~~--~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l 344 (629)
..++++|++++... ...|..++ ..+|.|+.|.+.|-.+. .+-.-..++++|+.||+++++++.+.++++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig------~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~L 194 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIG------TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRL 194 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHh------hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhcc
Confidence 45778888876432 22222221 11777888887776554 2333445677788888888887777777788
Q ss_pred cccceeeccCCCCccCc--hhhhcCccccEEeecCC
Q 047700 345 EKLENLSLVDSDIEWLP--NEIGELTQLRLLDLSSC 378 (629)
Q Consensus 345 ~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~ 378 (629)
++|+.|.+.+=.+..-. ..+-+|++|+.||+|..
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 88888777766555332 24557777777777764
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=2.2e-05 Score=52.69 Aligned_cols=33 Identities=39% Similarity=0.579 Sum_probs=15.1
Q ss_pred ccceeeccCCCCccCchhhhcCccccEEeecCC
Q 047700 346 KLENLSLVDSDIEWLPNEIGELTQLRLLDLSSC 378 (629)
Q Consensus 346 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 378 (629)
+|++|++++|+++.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 344444444444444444444555555555444
No 68
>PRK08116 hypothetical protein; Validated
Probab=97.75 E-value=0.00014 Score=70.95 Aligned_cols=99 Identities=22% Similarity=0.271 Sum_probs=60.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.++|..|+|||.||.+|++....+ -..+++++ ..+++..|........ ..+ ...+.+.+.+-. ||
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~-~~~----~~~~~~~l~~~d-lL 182 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG-KED----ENEIIRSLVNAD-LL 182 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc-ccc----HHHHHHHhcCCC-EE
Confidence 5799999999999999999998765 34556664 4555655555443211 111 223444555444 89
Q ss_pred EEcCCCCC--cchhh--hhhccCC-CCCCcEEEEeecc
Q 047700 82 ILDDIWAN--IDLET--VGILFGG-AHRGCKILLTPRY 114 (629)
Q Consensus 82 VlDdv~~~--~~~~~--l~~~~~~-~~~gs~ilvTTR~ 114 (629)
||||+... .+|.. +...+.. ...|..+|+||..
T Consensus 183 viDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 183 ILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred EEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 99999643 45543 2222211 2345568888863
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=0.00013 Score=73.92 Aligned_cols=60 Identities=17% Similarity=0.419 Sum_probs=27.6
Q ss_pred ccCCcEEEcCCcCCCCcccccCccccceeeccCC-CCccCchhhhcCccccEEeecCCCCCCccC
Q 047700 322 LSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDS-DIEWLPNEIGELTQLRLLDLSSCWNLKVIP 385 (629)
Q Consensus 322 l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p 385 (629)
+.++++|++++|.++.++.+ ..+|+.|.+++| +++.+|..+. ++|+.|++++|..+..+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc
Confidence 45555666655555543211 123555555543 3444444331 345555555554443333
No 70
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.72 E-value=0.00017 Score=62.97 Aligned_cols=89 Identities=25% Similarity=0.191 Sum_probs=51.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCc-E
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEK-I 79 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~-~ 79 (629)
.+.|+|..|+||||+|+.+........ ..++.++.+........... ...................+.+..+..+ .
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKPD 80 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 368999999999999999998876542 34566655444332222211 1111111112222333445555555444 9
Q ss_pred EEEEcCCCCCcch
Q 047700 80 LIILDDIWANIDL 92 (629)
Q Consensus 80 LlVlDdv~~~~~~ 92 (629)
++++|+++.....
T Consensus 81 viiiDei~~~~~~ 93 (148)
T smart00382 81 VLILDEITSLLDA 93 (148)
T ss_pred EEEEECCcccCCH
Confidence 9999999877443
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.67 E-value=0.00015 Score=73.48 Aligned_cols=112 Identities=21% Similarity=0.319 Sum_probs=68.1
Q ss_pred cccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCC-cccccchhhhcccCCcEEEcCCc-CCCCcccccCccc
Q 047700 269 LKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKM-QLLSLPQSVHLLSNLQTLCLDQC-VLGDISIIGNLEK 346 (629)
Q Consensus 269 ~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~-~~~~lp~~l~~l~~L~~L~l~~~-~l~~~~~i~~l~~ 346 (629)
++++++|++++|.+..+|. . ..+|+.|.+++| .++.+|..+. .+|++|++++| .+..++ .+
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---L-------P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP-----~s 113 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---L-------PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP-----ES 113 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---C-------CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc-----cc
Confidence 4678899999888888883 1 457888888875 4556776553 57889999888 554421 24
Q ss_pred cceeeccCCC---CccCchhhhcCccccEEeecCCCCCCccChhhhhcC-ccCceEEeccccc
Q 047700 347 LENLSLVDSD---IEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKL-TQLEELYMGNTFV 405 (629)
Q Consensus 347 L~~L~l~~~~---l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l-~~L~~L~l~~~~~ 405 (629)
|+.|++..+. +..+|.+ |+.|.+.++......+. -..+ ++|+.|++.+|..
T Consensus 114 Le~L~L~~n~~~~L~~LPss------Lk~L~I~~~n~~~~~~l--p~~LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPNG------LTSLSINSYNPENQARI--DNLISPSLKTLSLTGCSN 168 (426)
T ss_pred cceEEeCCCCCcccccCcch------Hhheecccccccccccc--ccccCCcccEEEecCCCc
Confidence 6666676654 4455554 44555543221111100 0122 4688888877764
No 72
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=2.2e-05 Score=86.13 Aligned_cols=163 Identities=17% Similarity=0.207 Sum_probs=89.7
Q ss_pred ehhHHHHHHHHhhhccCceEEEEeCC--eeeccccc--cccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEec
Q 047700 233 SMHDIVRDVSISIASRDHHVITVRND--VLVGWLNN--DVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALS 308 (629)
Q Consensus 233 ~mhd~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~ 308 (629)
-|-++++++.-..++..-.-..+.+. ....|+.. ..++.+++|.+.+-.+..-.-.--+.+ +++|+.||++
T Consensus 107 di~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~s-----FpNL~sLDIS 181 (699)
T KOG3665|consen 107 DIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCAS-----FPNLRSLDIS 181 (699)
T ss_pred cHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhc-----cCccceeecC
Confidence 34455555544444433222222221 12344332 457778888877654422110001111 7788888888
Q ss_pred CCcccccchhhhcccCCcEEEcCCcCCCC---cccccCccccceeeccCCCCccCchhh-------hcCccccEEeecCC
Q 047700 309 KMQLLSLPQSVHLLSNLQTLCLDQCVLGD---ISIIGNLEKLENLSLVDSDIEWLPNEI-------GELTQLRLLDLSSC 378 (629)
Q Consensus 309 ~~~~~~lp~~l~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i-------~~l~~L~~L~l~~~ 378 (629)
+++++.+ .+++++++|++|.+++=.+.. +..+.+|++|+.||+|..+...-+..+ ..||+|+.||.++.
T Consensus 182 ~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 182 GTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred CCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 8888777 567888888888887766665 456777888888888876544333211 23777777777764
Q ss_pred CCCCccChhhhhcCccCceEEec
Q 047700 379 WNLKVIPPNVISKLTQLEELYMG 401 (629)
Q Consensus 379 ~~l~~~p~~~i~~l~~L~~L~l~ 401 (629)
..-..+-...+..-++|+.+..-
T Consensus 261 di~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 261 DINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred chhHHHHHHHHHhCccHhhhhhh
Confidence 33222222223333455554433
No 73
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.66 E-value=0.00015 Score=62.73 Aligned_cols=23 Identities=35% Similarity=0.281 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|-|+|..|+||||+|+.++++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 56999999999999999999975
No 74
>PRK08118 topology modulation protein; Reviewed
Probab=97.66 E-value=2.4e-05 Score=70.56 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=28.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc-CCCCeEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE-KLFDQVVF 34 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~w 34 (629)
|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 7899999999999999999997654 45777776
No 75
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00037 Score=70.88 Aligned_cols=88 Identities=26% Similarity=0.345 Sum_probs=69.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCc-ccCCCHHHHHHHHHHHHc--CCc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLE-LCKGTESERARTLFDQLW--KEK 78 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~l~~~l~--~k~ 78 (629)
+.|+|..|+|||+.++++.+..+....=..++.|++-......+++..|+.+++.. ..+....+....+.+.+. ++.
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~ 124 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKT 124 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCe
Confidence 56899999999999999999977542222278899988889999999999999643 233455566677777776 688
Q ss_pred EEEEEcCCCCC
Q 047700 79 ILIILDDIWAN 89 (629)
Q Consensus 79 ~LlVlDdv~~~ 89 (629)
+++|||+++..
T Consensus 125 ~IvvLDEid~L 135 (366)
T COG1474 125 VIVILDEVDAL 135 (366)
T ss_pred EEEEEcchhhh
Confidence 99999999755
No 76
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.61 E-value=8e-05 Score=71.28 Aligned_cols=88 Identities=19% Similarity=0.297 Sum_probs=51.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
|.|+|..|+|||+||++++++.... ....++++++.-. ... ..+.+.+++ .-+|
T Consensus 41 lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~------~~~-----------------~~~~~~~~~-~~lL 94 (226)
T TIGR03420 41 LYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELA------QAD-----------------PEVLEGLEQ-ADLV 94 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHH------HhH-----------------HHHHhhccc-CCEE
Confidence 6799999999999999999886543 3445666553321 100 011112223 2389
Q ss_pred EEcCCCCCc---chh-hhhhccCC-CCCCcEEEEeeccc
Q 047700 82 ILDDIWANI---DLE-TVGILFGG-AHRGCKILLTPRYQ 115 (629)
Q Consensus 82 VlDdv~~~~---~~~-~l~~~~~~-~~~gs~ilvTTR~~ 115 (629)
|+||++... .|. .+...+.. ...+.++|+||+..
T Consensus 95 vIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 95 CLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred EEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 999998653 333 23332221 12345788888854
No 77
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.58 E-value=9.4e-06 Score=67.50 Aligned_cols=79 Identities=22% Similarity=0.297 Sum_probs=38.7
Q ss_pred CCccEEEecCCcccccchhhhc-ccCCcEEEcCCcCCCC-cccccCccccceeeccCCCCccCchhhhcCccccEEeecC
Q 047700 300 SKLRGLALSKMQLLSLPQSVHL-LSNLQTLCLDQCVLGD-ISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSS 377 (629)
Q Consensus 300 ~~L~~L~l~~~~~~~lp~~l~~-l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 377 (629)
..|+..+|++|.+.++|+.|.. ++.++.|++.+|.+.+ |.++..++.|+.|+++.|.+...|.-|..|.+|-.|+..+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 3444455555555555544332 2345555555555544 4445555555555555555555554444444444444444
Q ss_pred C
Q 047700 378 C 378 (629)
Q Consensus 378 ~ 378 (629)
+
T Consensus 133 n 133 (177)
T KOG4579|consen 133 N 133 (177)
T ss_pred C
Confidence 3
No 78
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.56 E-value=0.00016 Score=74.05 Aligned_cols=84 Identities=18% Similarity=0.099 Sum_probs=56.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCC-HHHH-HHHHHHHHc--CC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGT-ESER-ARTLFDQLW--KE 77 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~-~~~l~~~l~--~k 77 (629)
+.++|++|+|||++|+.+++......+|+.+.||++++.++..++...+ ........ ..+. .+-+.+..+ ++
T Consensus 197 iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~----rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 197 IILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY----RPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc----CCCCCCeEecCchHHHHHHHHHhcccC
Confidence 6789999999999999999998766678899999999998877775422 11100000 0111 111222222 57
Q ss_pred cEEEEEcCCCCC
Q 047700 78 KILIILDDIWAN 89 (629)
Q Consensus 78 ~~LlVlDdv~~~ 89 (629)
++++|+|++...
T Consensus 273 ~~vliIDEINRa 284 (459)
T PRK11331 273 KYVFIIDEINRA 284 (459)
T ss_pred CcEEEEehhhcc
Confidence 899999999765
No 79
>PRK08727 hypothetical protein; Validated
Probab=97.54 E-value=0.00019 Score=68.74 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=51.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.|+|..|+|||.||+++++....+ ...++++.+.+ ....+.+ ..+.+ .+.-+|
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~~~-----------------~~~~l-~~~dlL 97 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRLRD-----------------ALEAL-EGRSLV 97 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhHHH-----------------HHHHH-hcCCEE
Confidence 6899999999999999999987654 34556765322 1111111 11122 234589
Q ss_pred EEcCCCCCc---chhh-hhhccCC-CCCCcEEEEeecc
Q 047700 82 ILDDIWANI---DLET-VGILFGG-AHRGCKILLTPRY 114 (629)
Q Consensus 82 VlDdv~~~~---~~~~-l~~~~~~-~~~gs~ilvTTR~ 114 (629)
|+||++... .|.. +...+.. ..+|..||+|++.
T Consensus 98 iIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~ 135 (233)
T PRK08727 98 ALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQ 135 (233)
T ss_pred EEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 999997542 3432 2222211 2346679999884
No 80
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.51 E-value=0.00028 Score=73.81 Aligned_cols=84 Identities=19% Similarity=0.193 Sum_probs=48.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHH-HcCCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQ-LWKEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~k~~L 80 (629)
+.++|.+|+||||+|+.+++..... |+.++......+-.+++++.. ... ..+++.+
T Consensus 39 ilL~GppGtGKTtLA~~ia~~~~~~-------~~~l~a~~~~~~~ir~ii~~~----------------~~~~~~g~~~v 95 (413)
T PRK13342 39 MILWGPPGTGKTTLARIIAGATDAP-------FEALSAVTSGVKDLREVIEEA----------------RQRRSAGRRTI 95 (413)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC-------EEEEecccccHHHHHHHHHHH----------------HHhhhcCCceE
Confidence 5689999999999999999876432 333332221111122222221 111 1368899
Q ss_pred EEEcCCCCC--cchhhhhhccCCCCCCcEEEEe
Q 047700 81 IILDDIWAN--IDLETVGILFGGAHRGCKILLT 111 (629)
Q Consensus 81 lVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvT 111 (629)
|++|+++.. .+.+.+...+. .|..+++.
T Consensus 96 L~IDEi~~l~~~~q~~LL~~le---~~~iilI~ 125 (413)
T PRK13342 96 LFIDEIHRFNKAQQDALLPHVE---DGTITLIG 125 (413)
T ss_pred EEEechhhhCHHHHHHHHHHhh---cCcEEEEE
Confidence 999999865 34444544442 24555553
No 81
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.48 E-value=1.5e-05 Score=76.88 Aligned_cols=107 Identities=21% Similarity=0.227 Sum_probs=66.3
Q ss_pred cCCccEEEecCCccccc-----chhhhcccCCcEEEcCCcCCCCc------ccccCccccceeeccCCCCc-----cCch
Q 047700 299 MSKLRGLALSKMQLLSL-----PQSVHLLSNLQTLCLDQCVLGDI------SIIGNLEKLENLSLVDSDIE-----WLPN 362 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~l-----p~~l~~l~~L~~L~l~~~~l~~~------~~i~~l~~L~~L~l~~~~l~-----~lp~ 362 (629)
-+.||+++...|.+..- ...+...+.|+.+.+..|.|... ..+..+++|+.||++.|-++ .+..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 56777777777766532 23455667777777777766542 34667777777777777555 3344
Q ss_pred hhhcCccccEEeecCCCCCCccChhhh-----hcCccCceEEecccccc
Q 047700 363 EIGELTQLRLLDLSSCWNLKVIPPNVI-----SKLTQLEELYMGNTFVK 406 (629)
Q Consensus 363 ~i~~l~~L~~L~l~~~~~l~~~p~~~i-----~~l~~L~~L~l~~~~~~ 406 (629)
.+..+++|+.|++++| .++.-....+ ...++|+.|.+.+|.+.
T Consensus 236 aL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred Hhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 5566777777777777 4433222111 23566777777777654
No 82
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.45 E-value=0.0014 Score=63.83 Aligned_cols=117 Identities=23% Similarity=0.202 Sum_probs=74.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.+||.+|+||||||+.+.+..+... ..||..|-...-..-.++|+++-. -...+.++|..|
T Consensus 165 mIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq--------------~~~~l~krkTil 226 (554)
T KOG2028|consen 165 MILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ--------------NEKSLTKRKTIL 226 (554)
T ss_pred eEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH--------------HHHhhhcceeEE
Confidence 46899999999999999998877543 557877665544444455555532 123355889999
Q ss_pred EEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccccccc--------ccc--CCCCChHHHHHHHHHH
Q 047700 82 ILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQNVLVS--------EMH--SKNKPLAEWKDALQKL 139 (629)
Q Consensus 82 VlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~--------~~~--l~~~~~~~w~~~~~~~ 139 (629)
.+|.|..- .|-+.+ +|--.+|..++|....++--.+ |.. |.+.++.....++..-
T Consensus 227 FiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 227 FIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred EeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 99999644 222222 3445678888886555443211 111 5566888877777764
No 83
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.44 E-value=0.001 Score=66.67 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=58.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCe-EEEEEeCC-CcCHHHHHHHHHHHhCCcccCCCHHH------HHHHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQ-VVFVLKSS-TANVEKIQDEIAEQLGLELCKGTESE------RARTLFDQ 73 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~-~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~l~~~ 73 (629)
+.|+|..|+|||||++.+.+..... +=+. ++|+-+.+ ...+.++.+.+...+........... ....+.++
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~ 214 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKR 214 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999887643 2244 36767766 45789999998887654432222111 12233333
Q ss_pred H--cCCcEEEEEcCCC
Q 047700 74 L--WKEKILIILDDIW 87 (629)
Q Consensus 74 l--~~k~~LlVlDdv~ 87 (629)
+ +|++++||+|++-
T Consensus 215 f~~~GkdVVLvlDslt 230 (380)
T PRK12608 215 LVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHcCCCEEEEEeCcH
Confidence 3 3999999999994
No 84
>PRK07261 topology modulation protein; Provisional
Probab=97.41 E-value=0.00052 Score=62.21 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc-CCCCeEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE-KLFDQVVF 34 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~w 34 (629)
|.|+|++|+||||||+.+....... -+.|...|
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 7899999999999999998765432 13455555
No 85
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.38 E-value=0.00041 Score=65.37 Aligned_cols=34 Identities=29% Similarity=0.630 Sum_probs=28.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLK 37 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v 37 (629)
++|+|..|+||||++..+..+...+ |+.+++++-
T Consensus 16 ~viIG~sGSGKT~li~~lL~~~~~~--f~~I~l~t~ 49 (241)
T PF04665_consen 16 MVIIGKSGSGKTTLIKSLLYYLRHK--FDHIFLITP 49 (241)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccc--CCEEEEEec
Confidence 6899999999999999998876654 888877754
No 86
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.34 E-value=0.00044 Score=65.39 Aligned_cols=99 Identities=28% Similarity=0.375 Sum_probs=62.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+-|+|..|+|||.|.+++++.......=..++++ +.+++.+.+...+... ....+.+.++ .-=+|
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~------~~~~f~~~~~~~~~~~--------~~~~~~~~~~-~~DlL 101 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL------SAEEFIREFADALRDG--------EIEEFKDRLR-SADLL 101 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE------EHHHHHHHHHHHHHTT--------SHHHHHHHHC-TSSEE
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceee------cHHHHHHHHHHHHHcc--------cchhhhhhhh-cCCEE
Confidence 5799999999999999999997654222335565 5567777777766431 1344566666 44567
Q ss_pred EEcCCCCCc---chhh-hhhccC-CCCCCcEEEEeeccc
Q 047700 82 ILDDIWANI---DLET-VGILFG-GAHRGCKILLTPRYQ 115 (629)
Q Consensus 82 VlDdv~~~~---~~~~-l~~~~~-~~~~gs~ilvTTR~~ 115 (629)
++||++... .|+. +...+. ....|.+||+|++..
T Consensus 102 ~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 102 IIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRP 140 (219)
T ss_dssp EEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred EEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCC
Confidence 889997652 2332 222221 123466899999654
No 87
>PRK08181 transposase; Validated
Probab=97.33 E-value=0.0004 Score=67.37 Aligned_cols=96 Identities=19% Similarity=0.168 Sum_probs=55.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.++|..|+|||.||.++.+....+ ...++|+. ..++...+..... .... ....+.+ .+--||
T Consensus 109 lll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~~----~~~~----~~~l~~l-~~~dLL 171 (269)
T PRK08181 109 LLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVARR----ELQL----ESAIAKL-DKFDLL 171 (269)
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHHh----CCcH----HHHHHHH-hcCCEE
Confidence 6799999999999999999987654 34456664 4555555533221 1111 1222233 345699
Q ss_pred EEcCCCCC--cch-h-hhhhccCC-CCCCcEEEEeeccc
Q 047700 82 ILDDIWAN--IDL-E-TVGILFGG-AHRGCKILLTPRYQ 115 (629)
Q Consensus 82 VlDdv~~~--~~~-~-~l~~~~~~-~~~gs~ilvTTR~~ 115 (629)
||||+... ++| . .+...+.. ... ..+||||...
T Consensus 172 IIDDlg~~~~~~~~~~~Lf~lin~R~~~-~s~IiTSN~~ 209 (269)
T PRK08181 172 ILDDLAYVTKDQAETSVLFELISARYER-RSILITANQP 209 (269)
T ss_pred EEeccccccCCHHHHHHHHHHHHHHHhC-CCEEEEcCCC
Confidence 99999754 222 2 23222221 122 3588887643
No 88
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.31 E-value=0.0024 Score=69.38 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=69.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcC-------------------CCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEK-------------------LFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGT 62 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 62 (629)
+-++|..|+||||+|+.+.+....+. .|.-+++++.+....+.++ +++++....
T Consensus 41 yLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdI-ReLIe~a~~------ 113 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEM-AALLERAVY------ 113 (830)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHH-HHHHHHHHh------
Confidence 35899999999999998887754211 1222333333322222221 112221110
Q ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCCCc--chhhhhhccCCCCCCcEEEEeeccccccc-----cccc--CCCCChHHHH
Q 047700 63 ESERARTLFDQLWKEKILIILDDIWANI--DLETVGILFGGAHRGCKILLTPRYQNVLV-----SEMH--SKNKPLAEWK 133 (629)
Q Consensus 63 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~~~v~~-----~~~~--l~~~~~~~w~ 133 (629)
.-..++.-++|||+++... .++.|...+.......++|++|++..-.. +|.. ++..+.+++.
T Consensus 114 ---------~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv 184 (830)
T PRK07003 114 ---------APVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIV 184 (830)
T ss_pred ---------ccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHH
Confidence 0012566688899998763 47777666654455677788777765442 1222 5556777777
Q ss_pred HHHHHH
Q 047700 134 DALQKL 139 (629)
Q Consensus 134 ~~~~~~ 139 (629)
..++..
T Consensus 185 ~~L~~I 190 (830)
T PRK07003 185 SHLERI 190 (830)
T ss_pred HHHHHH
Confidence 666665
No 89
>PRK10536 hypothetical protein; Provisional
Probab=97.29 E-value=0.0012 Score=62.56 Aligned_cols=116 Identities=14% Similarity=0.129 Sum_probs=60.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE----eCCC--c---CHHHH----HHHHHHHhCCcccCCCHHHH-
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVL----KSST--A---NVEKI----QDEIAEQLGLELCKGTESER- 66 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~----vs~~--~---~~~~~----~~~i~~~l~~~~~~~~~~~~- 66 (629)
++.+.|.+|+|||+||.++..+.-..+.|+.++-.. +.+. | +.++- ++-|.+.+..-.+.......
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~~~~~~~~ 155 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYCL 155 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 478999999999999999888644334455444331 1111 1 22111 11222222110000000000
Q ss_pred -------HHHHHHHHcCCcE---EEEEcCCCCCcchhhhhhccCCCCCCcEEEEeeccccc
Q 047700 67 -------ARTLFDQLWKEKI---LIILDDIWANIDLETVGILFGGAHRGCKILLTPRYQNV 117 (629)
Q Consensus 67 -------~~~l~~~l~~k~~---LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v 117 (629)
...-..+++|..+ +||+|+.++.+- .++...+-..+.+|++|+|=-..++
T Consensus 156 ~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~sk~v~~GD~~Qi 215 (262)
T PRK10536 156 RPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGENVTVIVNGDITQC 215 (262)
T ss_pred HhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCCCCEEEEeCChhhc
Confidence 0011236677765 999999987743 3333333445789999987655444
No 90
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.28 E-value=0.0013 Score=60.56 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=21.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLF 29 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F 29 (629)
++.|+|.+|+|||+|.+.++......+.+
T Consensus 26 ~~ll~G~~G~GKT~ll~~~~~~~~~~~~~ 54 (185)
T PF13191_consen 26 NLLLTGESGSGKTSLLRALLDRLAERGGY 54 (185)
T ss_dssp -EEE-B-TTSSHHHHHHHHHHHHHHHT--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCE
Confidence 47899999999999999999998876333
No 91
>PRK09183 transposase/IS protein; Provisional
Probab=97.24 E-value=0.0011 Score=64.43 Aligned_cols=95 Identities=23% Similarity=0.253 Sum_probs=50.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.|+|..|+|||+||..+.+....++ ..+.++. ..++...+-..... . .....+.+. ..+.-++
T Consensus 105 v~l~Gp~GtGKThLa~al~~~a~~~G--~~v~~~~------~~~l~~~l~~a~~~----~---~~~~~~~~~-~~~~dlL 168 (259)
T PRK09183 105 IVLLGPSGVGKTHLAIALGYEAVRAG--IKVRFTT------AADLLLQLSTAQRQ----G---RYKTTLQRG-VMAPRLL 168 (259)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEe------HHHHHHHHHHHHHC----C---cHHHHHHHH-hcCCCEE
Confidence 67999999999999999988765432 2334443 33444333222111 0 011222222 2455699
Q ss_pred EEcCCCCC--cchh--hhhhccCC-CCCCcEEEEeec
Q 047700 82 ILDDIWAN--IDLE--TVGILFGG-AHRGCKILLTPR 113 (629)
Q Consensus 82 VlDdv~~~--~~~~--~l~~~~~~-~~~gs~ilvTTR 113 (629)
|+||++.. +.+. .+...+.. ...++ +|+||.
T Consensus 169 iiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn 204 (259)
T PRK09183 169 IIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSN 204 (259)
T ss_pred EEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecC
Confidence 99999753 2232 23222211 12344 777775
No 92
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.23 E-value=3.9e-05 Score=63.93 Aligned_cols=88 Identities=19% Similarity=0.276 Sum_probs=75.3
Q ss_pred cceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cccccCccccce
Q 047700 271 NCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLEKLEN 349 (629)
Q Consensus 271 ~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~ 349 (629)
.+...++++|.+..+|+.+... ++.++.|++++|.+..+|..+..++.|+.|+++.|++.. |..|..|.+|-+
T Consensus 54 el~~i~ls~N~fk~fp~kft~k------f~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIK------FPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred eEEEEecccchhhhCCHHHhhc------cchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence 3566788889999888765321 668899999999999999999999999999999999888 788888999999
Q ss_pred eeccCCCCccCchhh
Q 047700 350 LSLVDSDIEWLPNEI 364 (629)
Q Consensus 350 L~l~~~~l~~lp~~i 364 (629)
|+..++.+..+|-.+
T Consensus 128 Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 128 LDSPENARAEIDVDL 142 (177)
T ss_pred hcCCCCccccCcHHH
Confidence 999999888888654
No 93
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.23 E-value=0.0025 Score=61.73 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=78.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcC----CCCeEEEEEeCCCcCHHHHHHHHHHHhCCccc-CCCHHHHHHHHHHHHc-
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEK----LFDQVVFVLKSSTANVEKIQDEIAEQLGLELC-KGTESERARTLFDQLW- 75 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~- 75 (629)
+.|||..|.|||+++++++.+.-... .--.++.|.+....+...+...|+..++.... .........++.+.++
T Consensus 64 lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~ 143 (302)
T PF05621_consen 64 LLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRR 143 (302)
T ss_pred eEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHH
Confidence 46999999999999999987753321 11246677888889999999999999987643 3344444555556666
Q ss_pred CCcEEEEEcCCCCC------cc--hhhhhhccCCCCCCcEEEEeecccccc
Q 047700 76 KEKILIILDDIWAN------ID--LETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 76 ~k~~LlVlDdv~~~------~~--~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
-+-=+||+|++.+. .+ .-+....+.+...=+-|.+.|++...+
T Consensus 144 ~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~a 194 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRA 194 (302)
T ss_pred cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHH
Confidence 34557889999764 11 112223333445567788888766554
No 94
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.22 E-value=0.0025 Score=61.46 Aligned_cols=84 Identities=23% Similarity=0.363 Sum_probs=55.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCC-CeEEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHH------H
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLF-DQVVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESE------R 66 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------~ 66 (629)
++|.|..|+||||||+.+++..+.+ | +.++++-+.+.. .+.++.+++...-..+ ..++.... .
T Consensus 72 ~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~ 149 (274)
T cd01133 72 IGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALT 149 (274)
T ss_pred EEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 6899999999999999999998864 5 445666777755 4677777665432111 11222221 1
Q ss_pred HHHHHHHH---cCCcEEEEEcCCC
Q 047700 67 ARTLFDQL---WKEKILIILDDIW 87 (629)
Q Consensus 67 ~~~l~~~l---~~k~~LlVlDdv~ 87 (629)
.-.+.+++ +|+.+|+++||+-
T Consensus 150 a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 150 GLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHhcCCeEEEEEeChh
Confidence 23444555 3899999999993
No 95
>PTZ00202 tuzin; Provisional
Probab=97.22 E-value=0.0016 Score=65.91 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=49.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHc-----
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLW----- 75 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----- 75 (629)
++.|.|++|+|||||++.+..... + ...+++.. +..++++.|+.+++.+. .....++...|.+.+.
T Consensus 288 ivvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~LL~ALGV~p-~~~k~dLLrqIqeaLl~~~~e 358 (550)
T PTZ00202 288 IVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRSVVKALGVPN-VEACGDLLDFISEACRRAKKM 358 (550)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHHHHHHcCCCC-cccHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999985543 1 12233332 67999999999999732 2233444455554442
Q ss_pred -CCcEEEEEc
Q 047700 76 -KEKILIILD 84 (629)
Q Consensus 76 -~k~~LlVlD 84 (629)
|++.+||+-
T Consensus 359 ~GrtPVLII~ 368 (550)
T PTZ00202 359 NGETPLLVLK 368 (550)
T ss_pred CCCCEEEEEE
Confidence 566666654
No 96
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.22 E-value=0.0015 Score=68.75 Aligned_cols=98 Identities=16% Similarity=0.265 Sum_probs=58.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.|+|..|+|||.||+++++.......=..++|++. .++..++...+... . .....+..+.+.-+|
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~----~----~~~f~~~~~~~~dvL 198 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG----K----LNEFREKYRKKVDVL 198 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc----c----HHHHHHHHHhcCCEE
Confidence 569999999999999999998765321134567653 45666666655321 1 223444444556689
Q ss_pred EEcCCCCC---cch-hhhhhccCC-CCCCcEEEEeec
Q 047700 82 ILDDIWAN---IDL-ETVGILFGG-AHRGCKILLTPR 113 (629)
Q Consensus 82 VlDdv~~~---~~~-~~l~~~~~~-~~~gs~ilvTTR 113 (629)
++||++.. ..+ +.+...+.. ...|..||+||.
T Consensus 199 lIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 199 LIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred EEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 99999743 112 123222211 123457888875
No 97
>PRK05642 DNA replication initiation factor; Validated
Probab=97.21 E-value=0.0013 Score=62.98 Aligned_cols=89 Identities=24% Similarity=0.392 Sum_probs=53.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.|+|..|+|||.||+++++....+ -..++|++.. ++... ...+.+.+++-. +|
T Consensus 48 l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~------~~~~~-----------------~~~~~~~~~~~d-~L 101 (234)
T PRK05642 48 IYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLA------ELLDR-----------------GPELLDNLEQYE-LV 101 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHH------HHHhh-----------------hHHHHHhhhhCC-EE
Confidence 5699999999999999999876544 2456677542 22211 012333333333 67
Q ss_pred EEcCCCCC---cchhh-hhhccCC-CCCCcEEEEeecccc
Q 047700 82 ILDDIWAN---IDLET-VGILFGG-AHRGCKILLTPRYQN 116 (629)
Q Consensus 82 VlDdv~~~---~~~~~-l~~~~~~-~~~gs~ilvTTR~~~ 116 (629)
|+||++.. .+|+. +...+.. ...|..||+|++...
T Consensus 102 iiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 102 CLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred EEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 89999743 35544 3333321 234668888887543
No 98
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.21 E-value=0.00049 Score=62.61 Aligned_cols=71 Identities=30% Similarity=0.390 Sum_probs=43.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.++|..|+|||.||.++.+....+ =..+.|++ ..+++..+- ........ ..+.+.+. +-=||
T Consensus 50 l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~------~~~L~~~l~----~~~~~~~~----~~~~~~l~-~~dlL 112 (178)
T PF01695_consen 50 LILYGPPGTGKTHLAVAIANEAIRK--GYSVLFIT------ASDLLDELK----QSRSDGSY----EELLKRLK-RVDLL 112 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEE------HHHHHHHHH----CCHCCTTH----CHHHHHHH-TSSCE
T ss_pred EEEEhhHhHHHHHHHHHHHHHhccC--CcceeEee------cCceecccc----ccccccch----hhhcCccc-cccEe
Confidence 5799999999999999999987764 23456664 444544442 22111111 12334444 44677
Q ss_pred EEcCCCCC
Q 047700 82 ILDDIWAN 89 (629)
Q Consensus 82 VlDdv~~~ 89 (629)
||||+...
T Consensus 113 ilDDlG~~ 120 (178)
T PF01695_consen 113 ILDDLGYE 120 (178)
T ss_dssp EEETCTSS
T ss_pred ccccccee
Confidence 89999865
No 99
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.0017 Score=65.36 Aligned_cols=101 Identities=19% Similarity=0.210 Sum_probs=64.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh----hcCCCCeEEEEEe-CCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK----KEKLFDQVVFVLK-SSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWK 76 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~----~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 76 (629)
.-++|..|+||||+|+.++...- ...|.|...|... ++...++++ +++.+.+...+ ..+
T Consensus 29 ~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~~~~~~~p---------------~~~ 92 (313)
T PRK05564 29 HIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNIIEEVNKKP---------------YEG 92 (313)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHHHHHhcCc---------------ccC
Confidence 35899999999999999988642 2346777666542 333344443 23333332111 124
Q ss_pred CcEEEEEcCCCC--CcchhhhhhccCCCCCCcEEEEeecccccc
Q 047700 77 EKILIILDDIWA--NIDLETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 77 k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
++-++|+|+++. ...++.+...+.....++.+|++|.+.+.+
T Consensus 93 ~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~l 136 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQI 136 (313)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhC
Confidence 555666777654 356888888887777889999998766544
No 100
>PRK12377 putative replication protein; Provisional
Probab=97.14 E-value=0.0016 Score=62.29 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=48.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.++|..|+|||.||.++++....+ ...++++++ .++...|-..... .... ..+.+.+ .+--||
T Consensus 104 l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~------~~l~~~l~~~~~~---~~~~----~~~l~~l-~~~dLL 167 (248)
T PRK12377 104 FVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTV------PDVMSRLHESYDN---GQSG----EKFLQEL-CKVDLL 167 (248)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEH------HHHHHHHHHHHhc---cchH----HHHHHHh-cCCCEE
Confidence 5799999999999999999998754 344566654 3455544433321 1111 1222333 567789
Q ss_pred EEcCCCCC--cchh
Q 047700 82 ILDDIWAN--IDLE 93 (629)
Q Consensus 82 VlDdv~~~--~~~~ 93 (629)
||||+... ..|.
T Consensus 168 iIDDlg~~~~s~~~ 181 (248)
T PRK12377 168 VLDEIGIQRETKNE 181 (248)
T ss_pred EEcCCCCCCCCHHH
Confidence 99999644 4454
No 101
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.14 E-value=0.00075 Score=64.69 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKS 38 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 38 (629)
+.|+|+.|+|||+||+.+++..... -..+.++.+.
T Consensus 48 l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~ 82 (235)
T PRK08084 48 IYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLD 82 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHH
Confidence 5799999999999999999987644 3455677653
No 102
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.13 E-value=0.0013 Score=64.78 Aligned_cols=85 Identities=22% Similarity=0.259 Sum_probs=60.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCC-cccCCCHH---H----HHHHHHH-
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGL-ELCKGTES---E----RARTLFD- 72 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-~~~~~~~~---~----~~~~l~~- 72 (629)
|-|+|-+|.|||.+.+.+.+.... ..+|+++-+.|+.+.+...|+.+.+. +.+....+ + .+..+.+
T Consensus 33 ~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~ 107 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQW 107 (438)
T ss_pred EEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhh
Confidence 578999999999999999888732 35799999999999999999999852 21111111 1 1223333
Q ss_pred -HHc--CCcEEEEEcCCCCCcc
Q 047700 73 -QLW--KEKILIILDDIWANID 91 (629)
Q Consensus 73 -~l~--~k~~LlVlDdv~~~~~ 91 (629)
... ++.++||||+++.-.+
T Consensus 108 ~~~t~~d~~~~liLDnad~lrD 129 (438)
T KOG2543|consen 108 PAATNRDQKVFLILDNADALRD 129 (438)
T ss_pred HHhhccCceEEEEEcCHHhhhc
Confidence 222 5689999999976543
No 103
>PRK06526 transposase; Provisional
Probab=97.13 E-value=0.00046 Score=66.57 Aligned_cols=71 Identities=23% Similarity=0.259 Sum_probs=42.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.|+|.+|+|||+||.++.+....++ + .+.|+ +..++...+..... ... ....+. .+ .+.-+|
T Consensus 101 lll~Gp~GtGKThLa~al~~~a~~~g-~-~v~f~------t~~~l~~~l~~~~~----~~~---~~~~l~-~l-~~~dlL 163 (254)
T PRK06526 101 VVFLGPPGTGKTHLAIGLGIRACQAG-H-RVLFA------TAAQWVARLAAAHH----AGR---LQAELV-KL-GRYPLL 163 (254)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHCC-C-chhhh------hHHHHHHHHHHHHh----cCc---HHHHHH-Hh-ccCCEE
Confidence 67999999999999999998876542 2 23343 34445554433211 111 111222 22 345689
Q ss_pred EEcCCCCC
Q 047700 82 ILDDIWAN 89 (629)
Q Consensus 82 VlDdv~~~ 89 (629)
|+||+...
T Consensus 164 IIDD~g~~ 171 (254)
T PRK06526 164 IVDEVGYI 171 (254)
T ss_pred EEcccccC
Confidence 99999754
No 104
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.13 E-value=0.0025 Score=65.47 Aligned_cols=64 Identities=8% Similarity=0.044 Sum_probs=37.9
Q ss_pred CCcEEEEEcCCCCCc--chhhhhhccCCCCCCcEEEEeecccccc-cc----cc--cCCCCChHHHHHHHHHH
Q 047700 76 KEKILIILDDIWANI--DLETVGILFGGAHRGCKILLTPRYQNVL-VS----EM--HSKNKPLAEWKDALQKL 139 (629)
Q Consensus 76 ~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~~~v~-~~----~~--~l~~~~~~~w~~~~~~~ 139 (629)
+++-++|+|+++... .++.+...+.......++|++|.+.+-. .. +. .+...+.+++...+...
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~ 190 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYI 190 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHH
Confidence 456689999998764 4666766665545566777776554322 11 11 14455666666555543
No 105
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.11 E-value=0.0011 Score=65.90 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=58.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.++|..|+|||.||.++++....+ -..+.++++ .++..++....... +. ....+.+ .+-=+|
T Consensus 159 l~L~G~~G~GKThLa~Aia~~l~~~--g~~v~~~~~------~~l~~~lk~~~~~~----~~----~~~l~~l-~~~dlL 221 (306)
T PRK08939 159 LYLYGDFGVGKSYLLAAIANELAKK--GVSSTLLHF------PEFIRELKNSISDG----SV----KEKIDAV-KEAPVL 221 (306)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEEEH------HHHHHHHHHHHhcC----cH----HHHHHHh-cCCCEE
Confidence 5689999999999999999998754 233556644 45666665554321 11 1222233 467789
Q ss_pred EEcCCCCC--cchhh--hhhcc-C-CCCCCcEEEEeec
Q 047700 82 ILDDIWAN--IDLET--VGILF-G-GAHRGCKILLTPR 113 (629)
Q Consensus 82 VlDdv~~~--~~~~~--l~~~~-~-~~~~gs~ilvTTR 113 (629)
||||+..+ ..|.. +...+ . ....+-.+++||-
T Consensus 222 iIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 222 MLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred EEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 99999855 55753 43332 2 1123445777765
No 106
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.10 E-value=0.0023 Score=68.29 Aligned_cols=122 Identities=19% Similarity=0.184 Sum_probs=64.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc-------------------CCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE-------------------KLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGT 62 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 62 (629)
+-++|+.|+||||+|+.+.+..... +.|.-.++++......+.++ ++|++.+..
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~i-r~ii~~~~~------ 113 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEET-KEILDNIQY------ 113 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHH-HHHHHHHHh------
Confidence 4589999999999999998764321 11222333333222222221 122222110
Q ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeeccc-ccccc----cc--cCCCCChHHHH
Q 047700 63 ESERARTLFDQLWKEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQ-NVLVS----EM--HSKNKPLAEWK 133 (629)
Q Consensus 63 ~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~~----~~--~l~~~~~~~w~ 133 (629)
.-..+++-++|+|+++.. ...+.+...+........+|++|.+. .+... +. .+...+.+++.
T Consensus 114 ---------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~ 184 (546)
T PRK14957 114 ---------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIK 184 (546)
T ss_pred ---------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHH
Confidence 012367779999999765 34666766665444455555555443 33211 21 14555676766
Q ss_pred HHHHHH
Q 047700 134 DALQKL 139 (629)
Q Consensus 134 ~~~~~~ 139 (629)
..+...
T Consensus 185 ~~L~~i 190 (546)
T PRK14957 185 DQLKII 190 (546)
T ss_pred HHHHHH
Confidence 555554
No 107
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.10 E-value=0.0075 Score=64.26 Aligned_cols=130 Identities=14% Similarity=0.091 Sum_probs=67.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCc-----ccCCCHHHHHHHHHHHH--
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLE-----LCKGTESERARTLFDQL-- 74 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~l~~~l-- 74 (629)
+-++|..|+||||+|+.+++.....+.+...+|.|.+-. .+....... .......+.++.+.+.+
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~--------~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~ 110 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL--------AVRRGAHPDVLEIDAASNNSVEDVRDLREKVLL 110 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH--------HHhcCCCCceEEecccccCCHHHHHHHHHHHhh
Confidence 468999999999999999988754333333445443211 000000000 00000111122233332
Q ss_pred ---cCCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeeccc-cccc----cccc--CCCCChHHHHHHHHHH
Q 047700 75 ---WKEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQ-NVLV----SEMH--SKNKPLAEWKDALQKL 139 (629)
Q Consensus 75 ---~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~----~~~~--l~~~~~~~w~~~~~~~ 139 (629)
.+++-++|+|+++.. ..++.+...+........+|++|... .+.. ++.. +...+..+....+...
T Consensus 111 ~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i 187 (504)
T PRK14963 111 APLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRL 187 (504)
T ss_pred ccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHH
Confidence 256778999999865 44677777665444455555555433 3321 1111 4455666655545443
No 108
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.0086 Score=64.48 Aligned_cols=122 Identities=15% Similarity=0.142 Sum_probs=65.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc-------------------CCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE-------------------KLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGT 62 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 62 (629)
+-++|..|+||||+|+.+.+..... +.|.-++.++.+....+.++ ++++..+..
T Consensus 40 yLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddI-Reli~~~~y------ 112 (702)
T PRK14960 40 YLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDT-RELLDNVPY------ 112 (702)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHH-HHHHHHHhh------
Confidence 3589999999999999998775321 11212222332221122211 112221110
Q ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccccc-----ccccc--CCCCChHHHH
Q 047700 63 ESERARTLFDQLWKEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQNVL-----VSEMH--SKNKPLAEWK 133 (629)
Q Consensus 63 ~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v~-----~~~~~--l~~~~~~~w~ 133 (629)
.-..+++-++|+|+++.. ...+.+...+.....+.++|++|.+..-. .++.. ++..+..+..
T Consensus 113 ---------~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~ 183 (702)
T PRK14960 113 ---------APTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEIT 183 (702)
T ss_pred ---------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHH
Confidence 011367778999999865 34566666665444566777777664322 11211 4455666666
Q ss_pred HHHHHH
Q 047700 134 DALQKL 139 (629)
Q Consensus 134 ~~~~~~ 139 (629)
..+...
T Consensus 184 k~L~~I 189 (702)
T PRK14960 184 KHLGAI 189 (702)
T ss_pred HHHHHH
Confidence 655554
No 109
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.012 Score=62.59 Aligned_cols=64 Identities=8% Similarity=0.074 Sum_probs=38.5
Q ss_pred CCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEee-ccccccc----ccc--cCCCCChHHHHHHHHHH
Q 047700 76 KEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTP-RYQNVLV----SEM--HSKNKPLAEWKDALQKL 139 (629)
Q Consensus 76 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTT-R~~~v~~----~~~--~l~~~~~~~w~~~~~~~ 139 (629)
+++-++|+|+++.. ..++.+...+......+.+|++| +...+.. ++. .+...+..++...+...
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i 199 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYI 199 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHH
Confidence 67788999999875 45777777765545566666555 4333332 111 14455666666555554
No 110
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.09 E-value=0.00084 Score=60.11 Aligned_cols=99 Identities=25% Similarity=0.380 Sum_probs=52.3
Q ss_pred cceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhc-ccCCcEEEcCCcCCCC---cccccCccc
Q 047700 271 NCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHL-LSNLQTLCLDQCVLGD---ISIIGNLEK 346 (629)
Q Consensus 271 ~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~-l~~L~~L~l~~~~l~~---~~~i~~l~~ 346 (629)
+...+++++|.+..++.... ++.|..|.+..|.|+.+-+.+.. +++|+.|.+.+|++.. +..+..++.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~--------l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPH--------LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccceecccccchhhcccCCC--------ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence 34455666665544443222 56666666666666655433333 3456666666665544 344445566
Q ss_pred cceeeccCCCCccCch----hhhcCccccEEeecC
Q 047700 347 LENLSLVDSDIEWLPN----EIGELTQLRLLDLSS 377 (629)
Q Consensus 347 L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~~ 377 (629)
|++|.+-+|.++.-.. -+.++++|++||...
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 6666666665553332 234455555555544
No 111
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.09 E-value=0.00074 Score=60.44 Aligned_cols=80 Identities=21% Similarity=0.259 Sum_probs=41.3
Q ss_pred CCcEEEcCCcCCCCcccccCccccceeeccCCCCccCchhhh-cCccccEEeecCCCC--CCccChhhhhcCccCceEEe
Q 047700 324 NLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIG-ELTQLRLLDLSSCWN--LKVIPPNVISKLTQLEELYM 400 (629)
Q Consensus 324 ~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~l~~~~~--l~~~p~~~i~~l~~L~~L~l 400 (629)
+...++|++|.+...+.+..++.|.+|.+++|+|+.+-..+. -+++|..|.+.+|+. ++++.+ +..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hccCCccceeee
Confidence 344555555555555555555556666666666655544443 244566666655521 122222 445556666665
Q ss_pred ccccc
Q 047700 401 GNTFV 405 (629)
Q Consensus 401 ~~~~~ 405 (629)
-+|.+
T Consensus 121 l~Npv 125 (233)
T KOG1644|consen 121 LGNPV 125 (233)
T ss_pred cCCch
Confidence 55543
No 112
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.08 E-value=0.0018 Score=68.20 Aligned_cols=101 Identities=13% Similarity=0.211 Sum_probs=59.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.|+|..|+|||.|++++++.......-..++++ +..++...+...++.. .+..+.+.+.++ ..-+|
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~------~~~~~~~~~~~~-~~dvL 210 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKT------HKEIEQFKNEIC-QNDVL 210 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHh------hhHHHHHHHHhc-cCCEE
Confidence 5689999999999999999976543222334455 3456777777666431 022334444444 34578
Q ss_pred EEcCCCCCc---chh-hhhhccCC-CCCCcEEEEeeccc
Q 047700 82 ILDDIWANI---DLE-TVGILFGG-AHRGCKILLTPRYQ 115 (629)
Q Consensus 82 VlDdv~~~~---~~~-~l~~~~~~-~~~gs~ilvTTR~~ 115 (629)
|+||++... .+. .+...+.. ...|..||+|+...
T Consensus 211 iIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~ 249 (450)
T PRK14087 211 IIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKS 249 (450)
T ss_pred EEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 899997542 222 23222221 23345688886643
No 113
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.08 E-value=0.0022 Score=70.30 Aligned_cols=115 Identities=21% Similarity=0.187 Sum_probs=67.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCC---eEEEEEeC--C-CcCHHHHHHHH---------------HHHhCC----
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFD---QVVFVLKS--S-TANVEKIQDEI---------------AEQLGL---- 56 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~---~~~wv~vs--~-~~~~~~~~~~i---------------~~~l~~---- 56 (629)
+.|+|..|+||||+|+.+++......++. ..-||.++ . ..+...+...+ +...+.
T Consensus 178 vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~ 257 (615)
T TIGR02903 178 IILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPK 257 (615)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchh
Confidence 68999999999999999998876544442 22354432 1 22332221111 111110
Q ss_pred --------------cccCCCHHHHHHHHHHHHcCCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEE--eecccc
Q 047700 57 --------------ELCKGTESERARTLFDQLWKEKILIILDDIWAN--IDLETVGILFGGAHRGCKILL--TPRYQN 116 (629)
Q Consensus 57 --------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv--TTR~~~ 116 (629)
+.-+.-+...+..+.+.++.+++.++-|+.|.. ..|+.+...+....+...|++ ||++..
T Consensus 258 ~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~ 335 (615)
T TIGR02903 258 TGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE 335 (615)
T ss_pred cCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc
Confidence 001111233567888888899999998777654 457777766655555556666 566544
No 114
>PRK09087 hypothetical protein; Validated
Probab=97.08 E-value=0.0012 Score=62.60 Aligned_cols=22 Identities=27% Similarity=0.167 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+.|||..|+|||+|++.++++.
T Consensus 47 l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6899999999999999998764
No 115
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=8.4e-05 Score=69.47 Aligned_cols=99 Identities=20% Similarity=0.177 Sum_probs=52.5
Q ss_pred CCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccccceeeccCCCCccCch--hhhcCccccEEeecC
Q 047700 300 SKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPN--EIGELTQLRLLDLSS 377 (629)
Q Consensus 300 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~ 377 (629)
.+.+.|++.||.+..+. ...+|+.|++|.|+-|+|+.+..+..|+.|+.|.|+.|.|..+-. .+.++++|+.|-+..
T Consensus 19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 34445555555555432 133555566666666666555555566666666666665554432 334566666666655
Q ss_pred CCCCCccCh----hhhhcCccCceEE
Q 047700 378 CWNLKVIPP----NVISKLTQLEELY 399 (629)
Q Consensus 378 ~~~l~~~p~----~~i~~l~~L~~L~ 399 (629)
|.-.+.-+. .++.-|++|++||
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 544443332 2245566666665
No 116
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.06 E-value=0.0021 Score=65.74 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+-++|..|+||||+|+++.+...
T Consensus 39 lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 39 LLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999988765
No 117
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.04 E-value=0.0031 Score=60.25 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=48.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.++|.+|+|||+||.++++....+ -..+++++ +.++...+-..... .... ...+.+.+. +.=+|
T Consensus 102 ~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~--~~~~----~~~~l~~l~-~~dlL 166 (244)
T PRK07952 102 FIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSN--SETS----EEQLLNDLS-NVDLL 166 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhh--cccc----HHHHHHHhc-cCCEE
Confidence 5689999999999999999998754 34556664 44455444333311 1111 123444455 45588
Q ss_pred EEcCCCCC--cchh
Q 047700 82 ILDDIWAN--IDLE 93 (629)
Q Consensus 82 VlDdv~~~--~~~~ 93 (629)
||||+... .+|.
T Consensus 167 vIDDig~~~~s~~~ 180 (244)
T PRK07952 167 VIDEIGVQTESRYE 180 (244)
T ss_pred EEeCCCCCCCCHHH
Confidence 88999765 4454
No 118
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.04 E-value=0.0033 Score=68.94 Aligned_cols=88 Identities=19% Similarity=0.157 Sum_probs=60.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc---CCCC--eEEEEEeCCCcCHHHHHHHHHHHhCCccc--CCCHHHHHHHHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE---KLFD--QVVFVLKSSTANVEKIQDEIAEQLGLELC--KGTESERARTLFDQL 74 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~---~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~l~~~l 74 (629)
+-|+|..|.|||+.+++|.+..... .... .+++|.+..-.+...++..|..++....+ .....+....+...+
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 4699999999999999999876432 1222 25677777767888889999988854322 222334555666655
Q ss_pred c---CCcEEEEEcCCCCC
Q 047700 75 W---KEKILIILDDIWAN 89 (629)
Q Consensus 75 ~---~k~~LlVlDdv~~~ 89 (629)
. ....+||||+|+..
T Consensus 864 ~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred hcccccceEEEeehHhhh
Confidence 3 23458999999754
No 119
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.04 E-value=0.0047 Score=57.08 Aligned_cols=97 Identities=14% Similarity=0.072 Sum_probs=54.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc--------------------CCCCeEEEEEe-CCCcCHHHHHHHHHHHhCCcccC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE--------------------KLFDQVVFVLK-SSTANVEKIQDEIAEQLGLELCK 60 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~--------------------~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~ 60 (629)
+-++|..|+||||+|+.+.+..-.+ .+.|.. ++.. .....++++ +++.+.+....
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~-~~~~~~~~~~~~~i-~~i~~~~~~~~-- 92 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLH-RLEPEGQSIKVDQV-RELVEFLSRTP-- 92 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEE-EeccccCcCCHHHH-HHHHHHHccCc--
Confidence 5689999999999999998775432 122222 2211 111222111 12222221100
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeeccc
Q 047700 61 GTESERARTLFDQLWKEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQ 115 (629)
Q Consensus 61 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~ 115 (629)
..+.+-++|+||++.. +..+.+...+......+.+|++|++.
T Consensus 93 -------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 136 (188)
T TIGR00678 93 -------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSP 136 (188)
T ss_pred -------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 1256678999999765 34666766665555566777777643
No 120
>PRK06921 hypothetical protein; Provisional
Probab=97.03 E-value=0.0032 Score=61.31 Aligned_cols=94 Identities=16% Similarity=0.235 Sum_probs=52.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.++|..|+|||.||.+|++....+. -..++++.. .+++..+.... +. .....+.+ .+--||
T Consensus 120 l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~---------~~-~~~~~~~~-~~~dlL 181 (266)
T PRK06921 120 IALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF---------DL-LEAKLNRM-KKVEVL 181 (266)
T ss_pred EEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH---------HH-HHHHHHHh-cCCCEE
Confidence 67999999999999999999876431 244566654 23333332221 01 11222233 356789
Q ss_pred EEcCCCC-----C--cchhh--hhhccCC-CCCCcEEEEeec
Q 047700 82 ILDDIWA-----N--IDLET--VGILFGG-AHRGCKILLTPR 113 (629)
Q Consensus 82 VlDdv~~-----~--~~~~~--l~~~~~~-~~~gs~ilvTTR 113 (629)
||||+.. + .+|.. +...+.. ...+..+||||.
T Consensus 182 iIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn 223 (266)
T PRK06921 182 FIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSE 223 (266)
T ss_pred EEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 9999933 2 34543 3332221 122445777776
No 121
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.02 E-value=0.015 Score=62.20 Aligned_cols=122 Identities=18% Similarity=0.172 Sum_probs=65.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcC-------------------CCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEK-------------------LFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGT 62 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 62 (629)
+-++|..|+||||+|+.+.+...-.. .|.-++.++.+....+.++ +++++.+.-.
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~i-R~l~~~~~~~----- 114 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDT-RELLDNIPYA----- 114 (509)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHH-HHHHHHHhhc-----
Confidence 35899999999999999988753211 1222333333322233332 2233322111
Q ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccc-ccc----ccc--cCCCCChHHHH
Q 047700 63 ESERARTLFDQLWKEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQN-VLV----SEM--HSKNKPLAEWK 133 (629)
Q Consensus 63 ~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~----~~~--~l~~~~~~~w~ 133 (629)
-..++.-++|+|+|+.. ...+.+...+......+++|++|.+.. +.. ++. .++..+..++.
T Consensus 115 ----------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~ 184 (509)
T PRK14958 115 ----------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIA 184 (509)
T ss_pred ----------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHH
Confidence 01266778999999865 446666666654445666666665443 221 111 14445666555
Q ss_pred HHHHHH
Q 047700 134 DALQKL 139 (629)
Q Consensus 134 ~~~~~~ 139 (629)
..+...
T Consensus 185 ~~l~~i 190 (509)
T PRK14958 185 AHCQHL 190 (509)
T ss_pred HHHHHH
Confidence 444433
No 122
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.02 E-value=0.00046 Score=58.62 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=21.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
||.|+|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998875
No 123
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.02 E-value=0.0025 Score=70.68 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=66.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCC-------------------CCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKL-------------------FDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGT 62 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~-------------------F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 62 (629)
+-++|..|+||||+|+.+++....... |.-+++++.+....+..+ +.|.+.+..
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdI-ReLie~v~~------ 113 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDT-RELLDNVQY------ 113 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHH-HHHHHHHHh------
Confidence 358999999999999999988643211 111222222111111111 222222210
Q ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccc-ccc----cccc--CCCCChHHHH
Q 047700 63 ESERARTLFDQLWKEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQN-VLV----SEMH--SKNKPLAEWK 133 (629)
Q Consensus 63 ~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~----~~~~--l~~~~~~~w~ 133 (629)
.-..+++-++|||+++.. ...+.|...+-......++|++|.+.. +.. ++.. ++..+..++.
T Consensus 114 ---------~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~ 184 (944)
T PRK14949 114 ---------RPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIG 184 (944)
T ss_pred ---------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHH
Confidence 112377889999999866 456666666543344555665555544 332 1222 5566788887
Q ss_pred HHHHHH
Q 047700 134 DALQKL 139 (629)
Q Consensus 134 ~~~~~~ 139 (629)
..+...
T Consensus 185 ~~L~~i 190 (944)
T PRK14949 185 TQLNHI 190 (944)
T ss_pred HHHHHH
Confidence 666654
No 124
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.01 E-value=0.017 Score=62.78 Aligned_cols=64 Identities=13% Similarity=0.148 Sum_probs=36.6
Q ss_pred CCcEEEEEcCCCCCc--chhhhhhccCCCCCCcEEEEeecccccc-c----cccc--CCCCChHHHHHHHHHH
Q 047700 76 KEKILIILDDIWANI--DLETVGILFGGAHRGCKILLTPRYQNVL-V----SEMH--SKNKPLAEWKDALQKL 139 (629)
Q Consensus 76 ~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~~~v~-~----~~~~--l~~~~~~~w~~~~~~~ 139 (629)
+++-++|+|+++... ..+.|...+.......++|++|.+..-. . ++.. ++..+..++...+...
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~I 190 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHV 190 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHH
Confidence 667789999998653 3455555554334456666666554422 1 2222 4455666666555544
No 125
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.00 E-value=0.0008 Score=64.56 Aligned_cols=87 Identities=26% Similarity=0.453 Sum_probs=46.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHH---------HHHHHhCCccc-----------CC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQD---------EIAEQLGLELC-----------KG 61 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~---------~i~~~l~~~~~-----------~~ 61 (629)
+.|+|..|+|||+|++.+.+.....+ + .++|+...+......+.. .+...+..... ..
T Consensus 23 ~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (234)
T PF01637_consen 23 ILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSE 100 (234)
T ss_dssp EEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-G
T ss_pred EEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchh
Confidence 67999999999999999999874321 1 344554433332211111 11111211100 01
Q ss_pred CHHHHHHHHHHHHc--CCcEEEEEcCCCCCc
Q 047700 62 TESERARTLFDQLW--KEKILIILDDIWANI 90 (629)
Q Consensus 62 ~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~ 90 (629)
........+.+.+. +++++||+||++...
T Consensus 101 ~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~ 131 (234)
T PF01637_consen 101 DSFSALERLLEKLKKKGKKVIIVIDEFQYLA 131 (234)
T ss_dssp G-G--HHHHHHHHHHCHCCEEEEEETGGGGG
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEecHHHHh
Confidence 12233445555554 456999999997654
No 126
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.98 E-value=0.0021 Score=67.27 Aligned_cols=98 Identities=24% Similarity=0.315 Sum_probs=55.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.|+|..|+|||.||+++++....+..=..+++++ ..++...+...+... . ...+.+.+++ .-+|
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~----~----~~~~~~~~~~-~dlL 203 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN----K----MEEFKEKYRS-VDLL 203 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC----C----HHHHHHHHHh-CCEE
Confidence 56899999999999999999976542113345664 344445555555321 1 2233444443 3478
Q ss_pred EEcCCCCCcc---hh-hhhhccCC-CCCCcEEEEeecc
Q 047700 82 ILDDIWANID---LE-TVGILFGG-AHRGCKILLTPRY 114 (629)
Q Consensus 82 VlDdv~~~~~---~~-~l~~~~~~-~~~gs~ilvTTR~ 114 (629)
||||++.... ++ .+...+.. ...|..+|+|+..
T Consensus 204 iiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 204 LIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred EEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 8999975421 22 22222211 1234567777753
No 127
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.98 E-value=0.0016 Score=72.12 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+-++|++|+||||||+.+++...
T Consensus 55 lLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 55 LILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999998754
No 128
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.96 E-value=0.0015 Score=60.24 Aligned_cols=114 Identities=21% Similarity=0.244 Sum_probs=54.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe----CCC--c---CHHH----HHHHHHHHhCCcccCCCHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLK----SST--A---NVEK----IQDEIAEQLGLELCKGTESERA 67 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v----s~~--~---~~~~----~~~~i~~~l~~~~~~~~~~~~~ 67 (629)
++.+.|.+|.|||.||-+..-+.-.++.|+.++++.- .+. | +.++ ...-+.+.+..-......+...
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~~~~~~ 100 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEKLEELI 100 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhChHhHHHHh
Confidence 4789999999999999888877655578999888632 121 1 1111 0111122221111111111111
Q ss_pred H------HHHHHHcCC---cEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeeccccc
Q 047700 68 R------TLFDQLWKE---KILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQNV 117 (629)
Q Consensus 68 ~------~l~~~l~~k---~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v 117 (629)
+ .-..+++|+ .-++|+|+.++. .++..+... .+.||||+++=-..++
T Consensus 101 ~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~Q~ 158 (205)
T PF02562_consen 101 QNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPSQI 158 (205)
T ss_dssp HTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE-----
T ss_pred hcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCceee
Confidence 0 011234454 468999999765 455555444 5789999998765544
No 129
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.95 E-value=0.0025 Score=67.61 Aligned_cols=98 Identities=23% Similarity=0.296 Sum_probs=55.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.|+|..|+|||.||+++++.......-..+++++. .++..++...+... ....+.+.++ +.-+|
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~-~~dlL 215 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS------EKFTNDFVNALRNN--------TMEEFKEKYR-SVDVL 215 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC--------cHHHHHHHHh-cCCEE
Confidence 568999999999999999999875422233456643 34444444444321 1233444444 34578
Q ss_pred EEcCCCCCcc---h-hhhhhccCC-CCCCcEEEEeecc
Q 047700 82 ILDDIWANID---L-ETVGILFGG-AHRGCKILLTPRY 114 (629)
Q Consensus 82 VlDdv~~~~~---~-~~l~~~~~~-~~~gs~ilvTTR~ 114 (629)
||||++.... + +.+...+.. ...|..|++||..
T Consensus 216 iiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~ 253 (450)
T PRK00149 216 LIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR 253 (450)
T ss_pred EEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 8999975311 2 223222211 1234567777764
No 130
>PLN03025 replication factor C subunit; Provisional
Probab=96.94 E-value=0.0048 Score=62.27 Aligned_cols=124 Identities=13% Similarity=0.049 Sum_probs=63.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCC-eEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFD-QVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~L 80 (629)
+-++|..|+||||+|+.+++..... .|. .++-++.|...... ..+++++........ .-.++.-+
T Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~-~vr~~i~~~~~~~~~------------~~~~~~kv 102 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGID-VVRNKIKMFAQKKVT------------LPPGRHKI 102 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHH-HHHHHHHHHHhcccc------------CCCCCeEE
Confidence 3589999999999999999886422 232 22223333333322 222222222110000 00145678
Q ss_pred EEEcCCCCCc--chhhhhhccCCCCCCcEEEEeecccccc-c----cccc--CCCCChHHHHHHHHHH
Q 047700 81 IILDDIWANI--DLETVGILFGGAHRGCKILLTPRYQNVL-V----SEMH--SKNKPLAEWKDALQKL 139 (629)
Q Consensus 81 lVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~~~v~-~----~~~~--l~~~~~~~w~~~~~~~ 139 (629)
++||+++... .-+.+...+......++++++|....-. . ++.. +...+.+++...+...
T Consensus 103 iiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i 170 (319)
T PLN03025 103 VILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKV 170 (319)
T ss_pred EEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHH
Confidence 9999998662 2333444443334456777766543222 1 1211 4445666665555554
No 131
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.91 E-value=0.0043 Score=59.95 Aligned_cols=72 Identities=24% Similarity=0.326 Sum_probs=47.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.++|..|+|||.||.++.++.. +..+ .+.++ +..++..++....... ....++.+.+ .+-=||
T Consensus 108 l~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~------~~~el~~~Lk~~~~~~-------~~~~~l~~~l-~~~dlL 171 (254)
T COG1484 108 LVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFI------TAPDLLSKLKAAFDEG-------RLEEKLLREL-KKVDLL 171 (254)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEE------EHHHHHHHHHHHHhcC-------chHHHHHHHh-hcCCEE
Confidence 57899999999999999999998 4333 34454 4566666666655431 1122333333 345578
Q ss_pred EEcCCCCC
Q 047700 82 ILDDIWAN 89 (629)
Q Consensus 82 VlDdv~~~ 89 (629)
||||+...
T Consensus 172 IiDDlG~~ 179 (254)
T COG1484 172 IIDDIGYE 179 (254)
T ss_pred EEecccCc
Confidence 99999865
No 132
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.88 E-value=0.0026 Score=62.20 Aligned_cols=23 Identities=30% Similarity=0.150 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+.++|.+|+||||+|+.+++...
T Consensus 45 vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999988754
No 133
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.86 E-value=0.0025 Score=65.67 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+.++|..|+|||++|+++++....
T Consensus 159 vLL~GppGtGKT~lakaia~~l~~ 182 (364)
T TIGR01242 159 VLLYGPPGTGKTLLAKAVAHETNA 182 (364)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC
Confidence 578999999999999999997653
No 134
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.85 E-value=0.0038 Score=66.91 Aligned_cols=99 Identities=19% Similarity=0.254 Sum_probs=57.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.|+|..|+|||.|+++|++.......-..+++++ ..++..++...+... ..+.+.+.++. -=+|
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~--------~~~~f~~~y~~-~DLL 381 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG--------KGDSFRRRYRE-MDIL 381 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc--------cHHHHHHHhhc-CCEE
Confidence 67999999999999999999876431123455664 445555555444221 12234444443 3578
Q ss_pred EEcCCCCC---cchhh-hhhccCC-CCCCcEEEEeeccc
Q 047700 82 ILDDIWAN---IDLET-VGILFGG-AHRGCKILLTPRYQ 115 (629)
Q Consensus 82 VlDdv~~~---~~~~~-l~~~~~~-~~~gs~ilvTTR~~ 115 (629)
+|||++.. ..|+. +...+.. ...|..|||||+..
T Consensus 382 lIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~ 420 (617)
T PRK14086 382 LVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRP 420 (617)
T ss_pred EEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 89999755 22322 2222211 23355688888753
No 135
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.85 E-value=0.0041 Score=61.35 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=25.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKS 38 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 38 (629)
+.++|..|+||||+|+.+.......+.....-|+.++
T Consensus 61 vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 61 MSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 5689999999999998888776543333222355444
No 136
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.84 E-value=0.00021 Score=77.03 Aligned_cols=85 Identities=25% Similarity=0.280 Sum_probs=55.4
Q ss_pred hcccCCcEEEcCCcC-CCC--c-ccccCccccceeeccCC--CCccC----chhhhcCccccEEeecCCCCCCccChhhh
Q 047700 320 HLLSNLQTLCLDQCV-LGD--I-SIIGNLEKLENLSLVDS--DIEWL----PNEIGELTQLRLLDLSSCWNLKVIPPNVI 389 (629)
Q Consensus 320 ~~l~~L~~L~l~~~~-l~~--~-~~i~~l~~L~~L~l~~~--~l~~l----p~~i~~l~~L~~L~l~~~~~l~~~p~~~i 389 (629)
..+++|+.|.+..|. +.. . +....+++|+.|+++++ .+... +.....+++|+.|++++|..++......+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 347888888888874 333 2 45667889999999873 22211 12334568888888888865555544434
Q ss_pred hc-CccCceEEecccc
Q 047700 390 SK-LTQLEELYMGNTF 404 (629)
Q Consensus 390 ~~-l~~L~~L~l~~~~ 404 (629)
.. +++|+.|.+.+|.
T Consensus 265 ~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCS 280 (482)
T ss_pred HhhCCCcceEccCCCC
Confidence 43 6788888877665
No 137
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.0065 Score=65.20 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=36.3
Q ss_pred CCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecc-cccccc----ccc--CCCCChHHHHHHHHHH
Q 047700 76 KEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRY-QNVLVS----EMH--SKNKPLAEWKDALQKL 139 (629)
Q Consensus 76 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~-~~v~~~----~~~--l~~~~~~~w~~~~~~~ 139 (629)
++.-++|+|+++.. ..++.|...+-.-....++|++|.+ ..+... |.. ++..+.+++...+...
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~I 195 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAI 195 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHH
Confidence 66778999999866 4566666666443344555555444 444321 222 4455666665555543
No 138
>PRK06620 hypothetical protein; Validated
Probab=96.78 E-value=0.0019 Score=60.78 Aligned_cols=23 Identities=22% Similarity=0.088 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+-|||..|+|||+||+.+++...
T Consensus 47 l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 47 LLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred EEEECCCCCCHHHHHHHHHhccC
Confidence 57999999999999999877653
No 139
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.77 E-value=0.0052 Score=64.49 Aligned_cols=96 Identities=17% Similarity=0.235 Sum_probs=55.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.|+|..|+|||+||+++++..... ...+++++ ..++...+...+... ..+.+++..+ +.-+|
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~--------~~~~f~~~~~-~~dvL 206 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG--------EMQRFRQFYR-NVDAL 206 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc--------hHHHHHHHcc-cCCEE
Confidence 5699999999999999999987643 23345553 344555555555321 1123333333 44578
Q ss_pred EEcCCCCCcc--h--hhhhhccCC-CCCCcEEEEeecc
Q 047700 82 ILDDIWANID--L--ETVGILFGG-AHRGCKILLTPRY 114 (629)
Q Consensus 82 VlDdv~~~~~--~--~~l~~~~~~-~~~gs~ilvTTR~ 114 (629)
++||++.... + +.+...+.. ...|..||+||..
T Consensus 207 iIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 207 FIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred EEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 8899975422 1 122222210 1235578888854
No 140
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.75 E-value=0.0048 Score=62.34 Aligned_cols=94 Identities=19% Similarity=0.235 Sum_probs=51.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+-++|..|+||||+|+.+++.... ....++.+. ... +..++.+...... ....+.+-++
T Consensus 46 lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~-~~i~~~l~~~~~~--------------~~~~~~~~vl 104 (316)
T PHA02544 46 LLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRI-DFVRNRLTRFAST--------------VSLTGGGKVI 104 (316)
T ss_pred EEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccH-HHHHHHHHHHHHh--------------hcccCCCeEE
Confidence 446899999999999999887531 123444444 222 2222211111000 0011445678
Q ss_pred EEcCCCCC--cch-hhhhhccCCCCCCcEEEEeecccc
Q 047700 82 ILDDIWAN--IDL-ETVGILFGGAHRGCKILLTPRYQN 116 (629)
Q Consensus 82 VlDdv~~~--~~~-~~l~~~~~~~~~gs~ilvTTR~~~ 116 (629)
|+||++.. ... +.+...+.....++++|+||....
T Consensus 105 iiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 105 IIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred EEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 89999755 222 233333444456778888887544
No 141
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.0074 Score=65.46 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=36.9
Q ss_pred CCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecc-ccccc----ccc--cCCCCChHHHHHHHHHH
Q 047700 76 KEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRY-QNVLV----SEM--HSKNKPLAEWKDALQKL 139 (629)
Q Consensus 76 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~-~~v~~----~~~--~l~~~~~~~w~~~~~~~ 139 (629)
++.-++|||+|+.. ..++.+...+.......++|++|.+ ..+.. ++. .++..+.+++...+...
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i 195 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQV 195 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHH
Confidence 55668899999866 4566676666544445566655544 33321 222 24555666666555544
No 142
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.73 E-value=0.0099 Score=63.93 Aligned_cols=121 Identities=18% Similarity=0.175 Sum_probs=64.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHhhhc-------------------CCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCH
Q 047700 3 GVYGIGGIGKTTLMHEVLFEAKKE-------------------KLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTE 63 (629)
Q Consensus 3 ~i~G~gG~GKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 63 (629)
-++|..|+||||+|+.+.....-. +.|.-.++++.+....+.+ .++++..+...
T Consensus 42 Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~-ir~l~~~~~~~------ 114 (527)
T PRK14969 42 LFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDA-MRELLDNAQYA------ 114 (527)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHH-HHHHHHHHhhC------
Confidence 589999999999999998775321 1121222333222111111 12222222110
Q ss_pred HHHHHHHHHHHcCCcEEEEEcCCCCCc--chhhhhhccCCCCCCcEEEEeecccc-cccc----c--ccCCCCChHHHHH
Q 047700 64 SERARTLFDQLWKEKILIILDDIWANI--DLETVGILFGGAHRGCKILLTPRYQN-VLVS----E--MHSKNKPLAEWKD 134 (629)
Q Consensus 64 ~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~----~--~~l~~~~~~~w~~ 134 (629)
-..+++-++|+|+++... ..+.+...+........+|++|.+.. +... + ..++..+..++..
T Consensus 115 ---------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~ 185 (527)
T PRK14969 115 ---------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVS 185 (527)
T ss_pred ---------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHH
Confidence 012667789999998663 35666666654444566666554443 3211 1 1155567777765
Q ss_pred HHHHH
Q 047700 135 ALQKL 139 (629)
Q Consensus 135 ~~~~~ 139 (629)
.+...
T Consensus 186 ~L~~i 190 (527)
T PRK14969 186 HLQHI 190 (527)
T ss_pred HHHHH
Confidence 55443
No 143
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.72 E-value=0.0063 Score=61.00 Aligned_cols=98 Identities=20% Similarity=0.278 Sum_probs=54.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.++|..|+|||.||+++++....++ ..++++++ .++...+...-. . .. .+... ..+.+. .-=||
T Consensus 186 Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~------~~l~~~l~~~~~-~--~~--~~~~~-~~~~l~-~~DLL 250 (329)
T PRK06835 186 LLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTA------DELIEILREIRF-N--ND--KELEE-VYDLLI-NCDLL 250 (329)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEH------HHHHHHHHHHHh-c--cc--hhHHH-HHHHhc-cCCEE
Confidence 67999999999999999999987553 35666654 334443332111 0 00 01111 123333 34679
Q ss_pred EEcCCCCC--cchh--hhhhccCC-CCCCcEEEEeecc
Q 047700 82 ILDDIWAN--IDLE--TVGILFGG-AHRGCKILLTPRY 114 (629)
Q Consensus 82 VlDdv~~~--~~~~--~l~~~~~~-~~~gs~ilvTTR~ 114 (629)
||||+... ..|. .+...+.. ...+-.+||||.-
T Consensus 251 IIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 251 IIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 99999755 3342 23222221 1234568888763
No 144
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.72 E-value=0.006 Score=57.47 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=51.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHh----CCc---ccCCCHHH---HHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQL----GLE---LCKGTESE---RARTL 70 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l----~~~---~~~~~~~~---~~~~l 70 (629)
++-|+|.+|+|||++|..+....... ...++||+... ++...+.+. ++.. ... ....+..+ ....+
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l 89 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVAIQKT 89 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHHHHHH
Confidence 46799999999999999888776543 57889999876 766555543 2221 010 01111122 24444
Q ss_pred HHHHcC-CcEEEEEcCCC
Q 047700 71 FDQLWK-EKILIILDDIW 87 (629)
Q Consensus 71 ~~~l~~-k~~LlVlDdv~ 87 (629)
.+.+.. +.-+||+|.+.
T Consensus 90 ~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 90 SKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHhhcCccEEEEeCcH
Confidence 444543 45578888874
No 145
>PRK04195 replication factor C large subunit; Provisional
Probab=96.72 E-value=0.0072 Score=64.71 Aligned_cols=91 Identities=21% Similarity=0.295 Sum_probs=51.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHc-CCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLW-KEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~k~~L 80 (629)
+-|+|..|+||||+|+.++++.. |+. +-++.|...+. +..+.++....... .+. .++-+
T Consensus 42 lLL~GppG~GKTtla~ala~el~----~~~-ielnasd~r~~-~~i~~~i~~~~~~~--------------sl~~~~~kv 101 (482)
T PRK04195 42 LLLYGPPGVGKTSLAHALANDYG----WEV-IELNASDQRTA-DVIERVAGEAATSG--------------SLFGARRKL 101 (482)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC----CCE-EEEcccccccH-HHHHHHHHHhhccC--------------cccCCCCeE
Confidence 57999999999999999999863 332 33444443222 22333333221110 011 36789
Q ss_pred EEEcCCCCCc------chhhhhhccCCCCCCcEEEEeecc
Q 047700 81 IILDDIWANI------DLETVGILFGGAHRGCKILLTPRY 114 (629)
Q Consensus 81 lVlDdv~~~~------~~~~l~~~~~~~~~gs~ilvTTR~ 114 (629)
||+|+++... ....+...+. . .+..||+|+.+
T Consensus 102 IiIDEaD~L~~~~d~~~~~aL~~~l~-~-~~~~iIli~n~ 139 (482)
T PRK04195 102 ILLDEVDGIHGNEDRGGARAILELIK-K-AKQPIILTAND 139 (482)
T ss_pred EEEecCcccccccchhHHHHHHHHHH-c-CCCCEEEeccC
Confidence 9999998652 2444544443 2 23346666644
No 146
>CHL00181 cbbX CbbX; Provisional
Probab=96.70 E-value=0.0051 Score=60.69 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+.++|.+|+||||+|+.+++....
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~ 85 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYK 85 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999887543
No 147
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.69 E-value=0.0058 Score=57.15 Aligned_cols=81 Identities=27% Similarity=0.485 Sum_probs=53.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCC-------cccCCCHHHH------H
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGL-------ELCKGTESER------A 67 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~------~ 67 (629)
++|.|.+|+|||+|++.+.+... -+.++++.+.+.. .+.++.+++...-.. ....+..... .
T Consensus 18 ~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a 93 (215)
T PF00006_consen 18 IGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTA 93 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHH
T ss_pred EEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccc
Confidence 68999999999999999999875 4555888887764 567777776443111 1112222111 1
Q ss_pred HHHHHHH--cCCcEEEEEcCC
Q 047700 68 RTLFDQL--WKEKILIILDDI 86 (629)
Q Consensus 68 ~~l~~~l--~~k~~LlVlDdv 86 (629)
-.+.+++ +||.+|+++||+
T Consensus 94 ~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 94 LTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHTTSEEEEEEETH
T ss_pred hhhhHHHhhcCCceeehhhhh
Confidence 2233333 599999999999
No 148
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.68 E-value=0.00076 Score=63.05 Aligned_cols=85 Identities=22% Similarity=0.292 Sum_probs=57.6
Q ss_pred cCCccEEEecCCccc-----ccchhhhcccCCcEEEcCCcCCCC------------cccccCccccceeeccCCCCc-cC
Q 047700 299 MSKLRGLALSKMQLL-----SLPQSVHLLSNLQTLCLDQCVLGD------------ISIIGNLEKLENLSLVDSDIE-WL 360 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~l~~~~l~~------------~~~i~~l~~L~~L~l~~~~l~-~l 360 (629)
+..+..++||||.+. .+...+.+-.+|+..++++--... .+.+-+|++|+..+++.|-+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 777888899999875 344556666788888887642211 134667888888888888554 33
Q ss_pred c----hhhhcCccccEEeecCCCCCCcc
Q 047700 361 P----NEIGELTQLRLLDLSSCWNLKVI 384 (629)
Q Consensus 361 p----~~i~~l~~L~~L~l~~~~~l~~~ 384 (629)
| +.|++-+.|.+|.+++| .++.+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~Nn-GlGp~ 135 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNN-GLGPI 135 (388)
T ss_pred chHHHHHHhcCCCceeEEeecC-CCCcc
Confidence 3 34567788888888887 44433
No 149
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.68 E-value=0.0011 Score=61.98 Aligned_cols=61 Identities=26% Similarity=0.341 Sum_probs=35.1
Q ss_pred cCCccEEEecCCc--cc-ccchhhhcccCCcEEEcCCcCCCCc---ccccCccccceeeccCCCCcc
Q 047700 299 MSKLRGLALSKMQ--LL-SLPQSVHLLSNLQTLCLDQCVLGDI---SIIGNLEKLENLSLVDSDIEW 359 (629)
Q Consensus 299 ~~~L~~L~l~~~~--~~-~lp~~l~~l~~L~~L~l~~~~l~~~---~~i~~l~~L~~L~l~~~~l~~ 359 (629)
+++|+.|.++.|. +. .++.....+++|++|++++|.+..+ +.+..+.+|..|++.+|..+.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 6677777777773 32 3333344557777777777766543 334455555566666655443
No 150
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.68 E-value=0.0063 Score=66.16 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=37.9
Q ss_pred cCCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccc-cccc----ccc--CCCCChHHHHHHHHHH
Q 047700 75 WKEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQN-VLVS----EMH--SKNKPLAEWKDALQKL 139 (629)
Q Consensus 75 ~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~----~~~--l~~~~~~~w~~~~~~~ 139 (629)
.|++-++|+|+++.. ...+.|...+-......++|.+|.+.. +... +.. ++..+.+++...+...
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~i 190 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHI 190 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHH
Confidence 377789999999865 346666555543333445555554443 3321 222 5566777777666554
No 151
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.68 E-value=0.0029 Score=57.75 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=28.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVL 36 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~ 36 (629)
+|.+.|+.|+||||+|+.+++..... +..+++++
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~~ 42 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLKLK--YSNVIYLD 42 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEe
Confidence 47899999999999999999988654 66666663
No 152
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.67 E-value=0.006 Score=63.54 Aligned_cols=130 Identities=17% Similarity=0.145 Sum_probs=63.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCe-EEEEEeCCCcCHHHHHHHHHHHhCCccc-----CCCHHHHHHHHHHHH-
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQ-VVFVLKSSTANVEKIQDEIAEQLGLELC-----KGTESERARTLFDQL- 74 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~l~~~l- 74 (629)
+-++|..|+||||+|+.+.+...-...-.. .+..| .. .+.|......+.. .....+.+..+.+.+
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C----~s----C~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~ 114 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC----TS----CLEITKGISSDVLEIDAASNRGIENIRELRDNVK 114 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC----cH----HHHHHccCCccceeechhhcccHHHHHHHHHHHH
Confidence 468999999999999999887543211000 11111 11 1112211111100 000011122222222
Q ss_pred ----cCCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecc-ccccc----ccc--cCCCCChHHHHHHHHHH
Q 047700 75 ----WKEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRY-QNVLV----SEM--HSKNKPLAEWKDALQKL 139 (629)
Q Consensus 75 ----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~-~~v~~----~~~--~l~~~~~~~w~~~~~~~ 139 (629)
.++.-++|+|+++.. ..++.+...+........+|.+|.+ ..+.. ++. .++..+.......+...
T Consensus 115 ~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i 192 (484)
T PRK14956 115 FAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKL 192 (484)
T ss_pred hhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHH
Confidence 366778999999866 4577776666433334454545544 33322 221 24455555555545444
No 153
>PRK04296 thymidine kinase; Provisional
Probab=96.66 E-value=0.0038 Score=57.63 Aligned_cols=111 Identities=9% Similarity=0.099 Sum_probs=65.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccC---CCHHHHHHHHHHHHcCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCK---GTESERARTLFDQLWKE 77 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~k 77 (629)
++.|+|..|.||||+|..+..+.... -..++.+ ...++.+.....++++++..... ....+....+.+ ..++
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~--k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~ 78 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVF--KPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEK 78 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEE--eccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCC
Confidence 35789999999999999988887643 3333333 22334333344566666543221 223344444444 2345
Q ss_pred cEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccccc
Q 047700 78 KILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 78 ~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
.-+||+|.++-- ++...+...+ ...|..|++|.++.+..
T Consensus 79 ~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~~ 119 (190)
T PRK04296 79 IDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDFR 119 (190)
T ss_pred CCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcccc
Confidence 568999999643 2233333332 34578899999987764
No 154
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.65 E-value=0.0077 Score=63.59 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+-++|..|+||||+|+.+.+...
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999988753
No 155
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.64 E-value=0.00026 Score=76.33 Aligned_cols=62 Identities=26% Similarity=0.245 Sum_probs=33.1
Q ss_pred CccccceeeccCC-CCcc--CchhhhcCccccEEeecCC-CCCCccC---hhhhhcCccCceEEecccc
Q 047700 343 NLEKLENLSLVDS-DIEW--LPNEIGELTQLRLLDLSSC-WNLKVIP---PNVISKLTQLEELYMGNTF 404 (629)
Q Consensus 343 ~l~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L~l~~~-~~l~~~p---~~~i~~l~~L~~L~l~~~~ 404 (629)
.++.|+.|.+.++ .+.. +-.....+++|+.|++++| ......+ ......+.+|+.|+++++.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 3567777777766 3333 3344556777777777662 2222222 1113344566666666665
No 156
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.0028 Score=54.74 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=27.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
|+|.||.|+||||+++++.+..+.++ |..--++
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g-~kvgGf~ 40 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKG-YKVGGFI 40 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcC-ceeeeEE
Confidence 78999999999999999999988764 6554444
No 157
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.64 E-value=0.0058 Score=56.57 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
+-+||++|+||||||+.|.+.....
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~~~ 77 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELGVN 77 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT--
T ss_pred EEEECCCccchhHHHHHHHhccCCC
Confidence 4589999999999999999997754
No 158
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.62 E-value=0.0093 Score=57.33 Aligned_cols=86 Identities=24% Similarity=0.316 Sum_probs=52.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCeEEEEEeCCCcCHHHHHHHHHHHhCCcc----------cCCCHHH-
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEK----LFDQVVFVLKSSTANVEKIQDEIAEQLGLEL----------CKGTESE- 65 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----------~~~~~~~- 65 (629)
++.|+|.+|+|||++|..++-...... ....++|++....|+.+.+.+ +++..+... ...+.++
T Consensus 21 i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l 99 (235)
T cd01123 21 ITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNSDHQ 99 (235)
T ss_pred EEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCHHHH
Confidence 468999999999999999875533221 236789999888887655543 333332210 0111222
Q ss_pred --HHHHHHHHHc-C-CcEEEEEcCCC
Q 047700 66 --RARTLFDQLW-K-EKILIILDDIW 87 (629)
Q Consensus 66 --~~~~l~~~l~-~-k~~LlVlDdv~ 87 (629)
....+.+.+. . +--++|+|.+.
T Consensus 100 ~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 100 LQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 2234444444 3 67788899884
No 159
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=9.1e-05 Score=69.24 Aligned_cols=106 Identities=26% Similarity=0.286 Sum_probs=80.3
Q ss_pred cccCCcEEEcCCcCCCCcccccCccccceeeccCCCCccCchhhhcCccccEEeecCCCCCCccCh-hhhhcCccCceEE
Q 047700 321 LLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPP-NVISKLTQLEELY 399 (629)
Q Consensus 321 ~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~-~~i~~l~~L~~L~ 399 (629)
.+.+.+.|+..+|.+.++..+.+|+.|+.|.|+-|+|+++. .+..+++|+.|+|..| .+..+.. ..+.++++|+.|.
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 35678889999999999988999999999999999999885 4788999999999997 5555543 4468899999999
Q ss_pred eccccccccccCCCcccccccccccCccccCcceEE
Q 047700 400 MGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELK 435 (629)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~ 435 (629)
+..|.-.+..+..... .+...+++|++|+
T Consensus 95 L~ENPCc~~ag~nYR~-------~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRR-------KVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHH-------HHHHHcccchhcc
Confidence 9988654322111000 1223457888888
No 160
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.61 E-value=0.0088 Score=57.06 Aligned_cols=83 Identities=24% Similarity=0.277 Sum_probs=50.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH----hCCc---ccCCCHHH---HHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQ----LGLE---LCKGTESE---RARTL 70 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~----l~~~---~~~~~~~~---~~~~l 70 (629)
|+-|+|.+|+|||++|..+....... -..++||+.. .++.+.+.+ ++.. +... ....+..+ ..+.+
T Consensus 25 i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 100 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERFKQ-IAGEDFEELLSNIIIFEPSSFEEQSEAIRKA 100 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHHHH-HHhhChHhHhhCeEEEeCCCHHHHHHHHHHH
Confidence 46799999999999999998776543 5778999887 666555432 3322 1000 01112212 23334
Q ss_pred HHHHcCCcEEEEEcCCC
Q 047700 71 FDQLWKEKILIILDDIW 87 (629)
Q Consensus 71 ~~~l~~k~~LlVlDdv~ 87 (629)
.+.++.+.-++|+|.+.
T Consensus 101 ~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 101 EKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHhcccEEEEeCcH
Confidence 44444566788999983
No 161
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0065 Score=64.52 Aligned_cols=70 Identities=30% Similarity=0.403 Sum_probs=50.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc--CHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA--NVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKI 79 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 79 (629)
|-|.|..|+|||+||+++++... +.+.-.+..|++|.-. ..+++++.+ ...+.+.++-.+-
T Consensus 434 Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l----------------~~vfse~~~~~PS 496 (952)
T KOG0735|consen 434 ILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL----------------NNVFSEALWYAPS 496 (952)
T ss_pred EEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH----------------HHHHHHHHhhCCc
Confidence 56899999999999999999988 5566677788886532 244444322 2334555667899
Q ss_pred EEEEcCCCC
Q 047700 80 LIILDDIWA 88 (629)
Q Consensus 80 LlVlDdv~~ 88 (629)
++||||++.
T Consensus 497 iIvLDdld~ 505 (952)
T KOG0735|consen 497 IIVLDDLDC 505 (952)
T ss_pred EEEEcchhh
Confidence 999999963
No 162
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.013 Score=61.67 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=65.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc-------------------CCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE-------------------KLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGT 62 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 62 (629)
+-++|..|+||||+|+.+..-.... +.+.-++.++.+....+.++ ++|++...-.
T Consensus 38 ~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddI-R~Iie~~~~~----- 111 (491)
T PRK14964 38 ILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDI-KVILENSCYL----- 111 (491)
T ss_pred EEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHH-HHHHHHHHhc-----
Confidence 3589999999999999997643110 11222344444433333332 2222222100
Q ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeeccc-cccc----cc--ccCCCCChHHHH
Q 047700 63 ESERARTLFDQLWKEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQ-NVLV----SE--MHSKNKPLAEWK 133 (629)
Q Consensus 63 ~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~----~~--~~l~~~~~~~w~ 133 (629)
-..+++-++|+|+++.. ...+.+...+.......++|++|.+. .+.. ++ ..+...+..++.
T Consensus 112 ----------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~ 181 (491)
T PRK14964 112 ----------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLV 181 (491)
T ss_pred ----------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHH
Confidence 01256778999999765 34666766665555566777666443 3222 11 114444555555
Q ss_pred HHHHHH
Q 047700 134 DALQKL 139 (629)
Q Consensus 134 ~~~~~~ 139 (629)
..+...
T Consensus 182 ~~L~~i 187 (491)
T PRK14964 182 EHLVDI 187 (491)
T ss_pred HHHHHH
Confidence 555544
No 163
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.52 E-value=0.02 Score=57.96 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=51.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCe-EEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQ-VVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~L 80 (629)
+-|+|..|+||||+|+.+.+....+. +.. .+-++.+...... ..++.+..+....+. -.+.+-+
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~-~~~~~i~~~~~~~~~-------------~~~~~~v 105 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGID-VIRNKIKEFARTAPV-------------GGAPFKI 105 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchH-HHHHHHHHHHhcCCC-------------CCCCceE
Confidence 57899999999999999998865432 211 1122222222222 111121111100000 0133568
Q ss_pred EEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecc
Q 047700 81 IILDDIWAN--IDLETVGILFGGAHRGCKILLTPRY 114 (629)
Q Consensus 81 lVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~ 114 (629)
+++|+++.. +..+.+...+......+++|+++..
T Consensus 106 viiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 106 IFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred EEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 899998755 2344555555444445677776643
No 164
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.51 E-value=0.024 Score=50.72 Aligned_cols=40 Identities=30% Similarity=0.385 Sum_probs=31.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTAN 42 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 42 (629)
++.|+|..|+||||+|+.+....... -..++|+.....+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcchH
Confidence 57899999999999999998887642 45677887766543
No 165
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.49 E-value=0.0051 Score=58.81 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=25.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLK 37 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v 37 (629)
+.|+|..|+|||+||+++++....++ ....+++.
T Consensus 45 ~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~ 78 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVADASYGG--RNARYLDA 78 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeh
Confidence 67999999999999999999864331 23445554
No 166
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.48 E-value=0.0084 Score=62.12 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|-++|.+|+|||++|+++++...
T Consensus 168 vLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 168 VLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred eEEECCCCCChHHHHHHHHHHhC
Confidence 56899999999999999998765
No 167
>PHA00729 NTP-binding motif containing protein
Probab=96.46 E-value=0.011 Score=55.25 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|.|.+|+||||||..+.+..
T Consensus 20 IlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 20 AVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998875
No 168
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.45 E-value=0.018 Score=60.12 Aligned_cols=84 Identities=27% Similarity=0.421 Sum_probs=58.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHH------HH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESE------RA 67 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------~~ 67 (629)
++|.|.+|+|||||+.++....... +-+.++++-+.+.. .+.++.+++...-..+ ..++.... .+
T Consensus 146 ~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a 224 (461)
T PRK12597 146 TGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTG 224 (461)
T ss_pred EEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHH
Confidence 6899999999999999999887754 56888888887765 4677777776542211 11222222 12
Q ss_pred HHHHHHH---cCCcEEEEEcCC
Q 047700 68 RTLFDQL---WKEKILIILDDI 86 (629)
Q Consensus 68 ~~l~~~l---~~k~~LlVlDdv 86 (629)
..+.+++ +|+.+|+++|++
T Consensus 225 ~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 225 LTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHhcCCceEEEeccc
Confidence 3455555 389999999999
No 169
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.44 E-value=0.1 Score=49.12 Aligned_cols=92 Identities=18% Similarity=0.310 Sum_probs=54.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHc--CCcE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLW--KEKI 79 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~--~k~~ 79 (629)
+-+||..|+|||++++++.+....++ .--|.|++. ++. + ...+.+.++ ..||
T Consensus 55 vLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~-~L~-----------------~----l~~l~~~l~~~~~kF 108 (249)
T PF05673_consen 55 VLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE-DLG-----------------D----LPELLDLLRDRPYKF 108 (249)
T ss_pred eEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH-Hhc-----------------c----HHHHHHHHhcCCCCE
Confidence 45899999999999999998877654 222333321 000 0 122233333 5799
Q ss_pred EEEEcCCCCC---cchhhhhhccCC----CCCCcEEEEeeccccccc
Q 047700 80 LIILDDIWAN---IDLETVGILFGG----AHRGCKILLTPRYQNVLV 119 (629)
Q Consensus 80 LlVlDdv~~~---~~~~~l~~~~~~----~~~gs~ilvTTR~~~v~~ 119 (629)
+|.+||+-=+ ..+..+...+.. ....-.|..||-.++..+
T Consensus 109 Ilf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 109 ILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred EEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 9999998632 446666555532 223444555555555554
No 170
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.43 E-value=0.0016 Score=60.89 Aligned_cols=79 Identities=25% Similarity=0.335 Sum_probs=36.7
Q ss_pred cCCccEEEecCCcccccchhhhcccCCcEEEcCCcC--CCC--cccccCccccceeeccCCCCccC--chhhhcCccccE
Q 047700 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCV--LGD--ISIIGNLEKLENLSLVDSDIEWL--PNEIGELTQLRL 372 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~--l~~--~~~i~~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~~ 372 (629)
+..|+.|++.++.++.+. .+..+++|++|.++.|. +.. +....++++|++|++++|++.-+ -..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 444555555555444332 13345566666666652 222 22233445666666666554421 012334455555
Q ss_pred EeecCC
Q 047700 373 LDLSSC 378 (629)
Q Consensus 373 L~l~~~ 378 (629)
|++.+|
T Consensus 121 Ldl~n~ 126 (260)
T KOG2739|consen 121 LDLFNC 126 (260)
T ss_pred hhcccC
Confidence 555555
No 171
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.43 E-value=0.018 Score=53.28 Aligned_cols=85 Identities=22% Similarity=0.307 Sum_probs=52.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCcc----cCCCHHHHHHHHHHHHc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS-TANVEKIQDEIAEQLGLEL----CKGTESERARTLFDQLW 75 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~l~ 75 (629)
|+.+||..|+||||.+.+++.....+ -..+..|+... .-...+-++..++.++... ...++.+......+..+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 68999999999999999998887765 45566777633 3345666777788887542 12233343333333333
Q ss_pred C-CcEEEEEcCCC
Q 047700 76 K-EKILIILDDIW 87 (629)
Q Consensus 76 ~-k~~LlVlDdv~ 87 (629)
. +.=++++|-..
T Consensus 81 ~~~~D~vlIDT~G 93 (196)
T PF00448_consen 81 KKGYDLVLIDTAG 93 (196)
T ss_dssp HTTSSEEEEEE-S
T ss_pred hcCCCEEEEecCC
Confidence 3 33466667664
No 172
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.42 E-value=0.013 Score=58.93 Aligned_cols=24 Identities=42% Similarity=0.558 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+.++|+.|+|||+||+.+.+....
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~~~~ 56 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 579999999999999999988653
No 173
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.40 E-value=0.028 Score=53.67 Aligned_cols=86 Identities=20% Similarity=0.273 Sum_probs=52.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCeEEEEEeCCCcCHHHHHHHHHHHhCCc----------ccCCCHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEK----LFDQVVFVLKSSTANVEKIQDEIAEQLGLE----------LCKGTESER 66 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~----------~~~~~~~~~ 66 (629)
|+.|+|.+|+|||+||..+.-.....+ .=..++|++....++...+.+ ++...... ....+.++.
T Consensus 21 v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~ 99 (226)
T cd01393 21 ITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARPYNGEQQ 99 (226)
T ss_pred EEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeCCCHHHH
Confidence 468999999999999999877654321 015678999888887655543 33332211 111233343
Q ss_pred HHHHHHHHc----CCcEEEEEcCCC
Q 047700 67 ARTLFDQLW----KEKILIILDDIW 87 (629)
Q Consensus 67 ~~~l~~~l~----~k~~LlVlDdv~ 87 (629)
...+.+..+ .+.-++|+|.+.
T Consensus 100 ~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 100 LEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 333333332 355589999985
No 174
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.016 Score=58.85 Aligned_cols=87 Identities=15% Similarity=0.186 Sum_probs=50.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCcccCC-CHHHHHHHHHHHHcCCc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS-TANVEKIQDEIAEQLGLELCKG-TESERARTLFDQLWKEK 78 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~l~~~l~~k~ 78 (629)
++.++|..|+||||++.++......+.....+..|+... .....+-++...+.++...... +..+.. .....+.++
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~-~~l~~l~~~- 216 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ-LALAELRNK- 216 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHH-HHHHHhcCC-
Confidence 578999999999999999998865431123455665422 2234455555556665543221 112222 233344555
Q ss_pred EEEEEcCCCCC
Q 047700 79 ILIILDDIWAN 89 (629)
Q Consensus 79 ~LlVlDdv~~~ 89 (629)
-++++|.....
T Consensus 217 DlVLIDTaG~~ 227 (374)
T PRK14722 217 HMVLIDTIGMS 227 (374)
T ss_pred CEEEEcCCCCC
Confidence 44558988644
No 175
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.40 E-value=0.018 Score=59.42 Aligned_cols=22 Identities=14% Similarity=0.065 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+-++|+.|+|||++|+.+....
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 3589999999999999987653
No 176
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.016 Score=60.92 Aligned_cols=87 Identities=18% Similarity=0.272 Sum_probs=47.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCcccC-CCHHHHHHHHHHHHcCCc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS-TANVEKIQDEIAEQLGLELCK-GTESERARTLFDQLWKEK 78 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~~k~ 78 (629)
+|+|+|.+|+||||++.++......+.....+..|+... .....+.++...+.++..... .+..+.. ...+.+. ..
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~-~aL~~l~-~~ 429 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLL-DLLERLR-DY 429 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHH-HHHHHhc-cC
Confidence 588999999999999999988765443334455665432 112223333333333332222 1222222 3333343 35
Q ss_pred EEEEEcCCCCC
Q 047700 79 ILIILDDIWAN 89 (629)
Q Consensus 79 ~LlVlDdv~~~ 89 (629)
-+|++|.....
T Consensus 430 DLVLIDTaG~s 440 (559)
T PRK12727 430 KLVLIDTAGMG 440 (559)
T ss_pred CEEEecCCCcc
Confidence 57888888643
No 177
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.33 E-value=0.02 Score=56.42 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=45.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc-CCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCcccC-CCHHHHHHHHHHHHcCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE-KLFDQVVFVLKSST-ANVEKIQDEIAEQLGLELCK-GTESERARTLFDQLWKE 77 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~~k 77 (629)
+++|+|..|+||||++..+......+ +. ..+..|+.... ....+.++.-.+.++..... .+..+.. ...+.+.+
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~-~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~-~~l~~~~~- 272 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGN-KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELR-KALDRLRD- 272 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCC-CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHH-HHHHHccC-
Confidence 58899999999999999998877654 22 24556665331 11223333334444433221 2233332 23333333
Q ss_pred cEEEEEcCC
Q 047700 78 KILIILDDI 86 (629)
Q Consensus 78 ~~LlVlDdv 86 (629)
.=+|++|..
T Consensus 273 ~d~vliDt~ 281 (282)
T TIGR03499 273 KDLILIDTA 281 (282)
T ss_pred CCEEEEeCC
Confidence 456777754
No 178
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.33 E-value=0.027 Score=54.29 Aligned_cols=87 Identities=25% Similarity=0.276 Sum_probs=57.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh--cCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHH------
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK--EKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESE------ 65 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------ 65 (629)
++|.|-+|+|||+|+..+.++... +++-+.++++-+.+.. .+.++.+++...-..+ ...+....
T Consensus 72 ~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~ 151 (276)
T cd01135 72 IPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPR 151 (276)
T ss_pred EEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHH
Confidence 689999999999999999887651 2335778888887765 5677777776542211 11222211
Q ss_pred HHHHHHHHHc---CCcEEEEEcCCCC
Q 047700 66 RARTLFDQLW---KEKILIILDDIWA 88 (629)
Q Consensus 66 ~~~~l~~~l~---~k~~LlVlDdv~~ 88 (629)
..-.+.++++ ++++|+++||+-.
T Consensus 152 ~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 152 MALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1223444443 7999999999943
No 179
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.32 E-value=0.017 Score=56.33 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=29.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQ 47 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 47 (629)
|-+.|.+|+|||+||+.+..... ...+.++++...+..++.
T Consensus 24 vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence 56899999999999999986321 234566776666555543
No 180
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0073 Score=58.16 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=27.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc--CCCCeEEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE--KLFDQVVFVL 36 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~--~~F~~~~wv~ 36 (629)
+|-++|++|.|||+|++++++...++ ..+....-|.
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 46789999999999999999997664 3344444443
No 181
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.31 E-value=0.0033 Score=53.85 Aligned_cols=22 Identities=45% Similarity=0.646 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|+|.|..|+||||+|+++.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998885
No 182
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.29 E-value=0.017 Score=59.44 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=53.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcC-HHHHHHHHHHHhCCc-------ccCCCHHHH------H
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTAN-VEKIQDEIAEQLGLE-------LCKGTESER------A 67 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~------~ 67 (629)
++|+|..|+|||||++.+..... .+.++.+-+.+... +.++.++++..-+.+ ..++..... +
T Consensus 165 igI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A 240 (444)
T PRK08972 165 MGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETA 240 (444)
T ss_pred EEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHH
Confidence 78999999999999999986433 36777777777654 566777665442211 112222221 2
Q ss_pred HHHHHHH--cCCcEEEEEcCCC
Q 047700 68 RTLFDQL--WKEKILIILDDIW 87 (629)
Q Consensus 68 ~~l~~~l--~~k~~LlVlDdv~ 87 (629)
..+.+++ +|+.+|+++||+-
T Consensus 241 ~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 241 TTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHcCCCEEEEEcChH
Confidence 2344444 4999999999993
No 183
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.28 E-value=0.019 Score=52.55 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=63.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE---eCCCcCHHHHHHH------HHHHhCCc------ccCCCHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVL---KSSTANVEKIQDE------IAEQLGLE------LCKGTESE 65 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~~------i~~~l~~~------~~~~~~~~ 65 (629)
+++|+|..|+|||||++.++..... ..+.++++ +. ..+.....+. +++.++.. ....+..+
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 4789999999999999999876543 45555543 22 1222222221 34444432 11122222
Q ss_pred -HHHHHHHHHcCCcEEEEEcCCCCC---cchhhhhhccCCC-CC-CcEEEEeecccccc
Q 047700 66 -RARTLFDQLWKEKILIILDDIWAN---IDLETVGILFGGA-HR-GCKILLTPRYQNVL 118 (629)
Q Consensus 66 -~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~l~~~~~~~-~~-gs~ilvTTR~~~v~ 118 (629)
..-.+...+-..+-++++|+.-.. ...+.+...+... .. |..||++|.+.+.+
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 223445555678888999998644 2223333333211 12 66888888876653
No 184
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.28 E-value=0.016 Score=54.91 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=31.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTAN 42 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 42 (629)
++.|.|.+|+||||+|..+......+ -..++|++....++
T Consensus 21 i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 21 VTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 46799999999999999988776533 45678888766654
No 185
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.27 E-value=0.015 Score=60.21 Aligned_cols=96 Identities=20% Similarity=0.229 Sum_probs=61.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS-TANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKI 79 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 79 (629)
++.|+|+-++||||+++.+-...... .+++..-+ .++..++ .+.+... .+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l-~d~~~~~----------------~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL-LDLLRAY----------------IELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH-HHHHHHH----------------HHhhccCCc
Confidence 47899999999999997765554322 44443211 2222222 1111111 111112788
Q ss_pred EEEEcCCCCCcchhhhhhccCCCCCCcEEEEeeccccccc
Q 047700 80 LIILDDIWANIDLETVGILFGGAHRGCKILLTPRYQNVLV 119 (629)
Q Consensus 80 LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~ 119 (629)
.++||.|+...+|......+.+.++. +|++|+-+.....
T Consensus 97 yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~ 135 (398)
T COG1373 97 YIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLS 135 (398)
T ss_pred eEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhc
Confidence 99999999999999887777666655 8999888777653
No 186
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.27 E-value=0.031 Score=58.08 Aligned_cols=85 Identities=24% Similarity=0.375 Sum_probs=57.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHH------HH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESE------RA 67 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------~~ 67 (629)
++|.|.+|+|||||+.++......+. =+.++++-+.+.. .+.++.+++...-..+ ..+..... ..
T Consensus 147 ~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a 225 (463)
T PRK09280 147 IGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTG 225 (463)
T ss_pred EEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHH
Confidence 68999999999999999988876542 2567788887755 4677777776542211 11222222 12
Q ss_pred HHHHHHH---cCCcEEEEEcCCC
Q 047700 68 RTLFDQL---WKEKILIILDDIW 87 (629)
Q Consensus 68 ~~l~~~l---~~k~~LlVlDdv~ 87 (629)
..+.+++ +|+++|+++|++-
T Consensus 226 ~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 226 LTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHhcCCceEEEecchH
Confidence 3455555 5899999999993
No 187
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.27 E-value=0.0034 Score=58.34 Aligned_cols=26 Identities=38% Similarity=0.524 Sum_probs=23.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
||||.|.+|+||||+|+.+.......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999987753
No 188
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.26 E-value=0.022 Score=58.91 Aligned_cols=82 Identities=17% Similarity=0.265 Sum_probs=53.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcC-HHHHHHHHHHHhCCc-------ccCCCHHH------HH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTAN-VEKIQDEIAEQLGLE-------LCKGTESE------RA 67 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~------~~ 67 (629)
++|+|..|+|||||++.++.... -+.++++-+.+... +.++.++.+..-+.+ ..++.... .+
T Consensus 161 i~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a 236 (442)
T PRK08927 161 MGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLT 236 (442)
T ss_pred EEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHH
Confidence 78999999999999999987765 34566677766554 556666555443221 11222222 12
Q ss_pred HHHHHHH--cCCcEEEEEcCCC
Q 047700 68 RTLFDQL--WKEKILIILDDIW 87 (629)
Q Consensus 68 ~~l~~~l--~~k~~LlVlDdv~ 87 (629)
-.+.+++ +|+.+|+++||+-
T Consensus 237 ~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 237 LAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHCCCcEEEEEeCcH
Confidence 3344555 3999999999993
No 189
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.26 E-value=0.02 Score=56.84 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=52.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCc------ccCCCHHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLE------LCKGTESERARTLFDQL 74 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------~~~~~~~~~~~~l~~~l 74 (629)
++-|+|..|+||||||..+....... -..++||+.-+.++.. .+++++.+ ......++....+...+
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 45699999999999998887776543 4567799887766653 24444432 11123344444454444
Q ss_pred c-CCcEEEEEcCCC
Q 047700 75 W-KEKILIILDDIW 87 (629)
Q Consensus 75 ~-~k~~LlVlDdv~ 87 (629)
+ +.--++|+|.|-
T Consensus 130 ~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 130 RSGAVDIIVVDSVA 143 (321)
T ss_pred hccCCcEEEEcchh
Confidence 4 567789999985
No 190
>PRK08233 hypothetical protein; Provisional
Probab=96.25 E-value=0.01 Score=54.40 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
||+|.|.+|+||||+|+.+.....
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999988753
No 191
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.25 E-value=0.019 Score=58.24 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+.|+|+.|+|||++|+.+.+....
T Consensus 54 ~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 54 VLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred EEEECCCCccHHHHHHHHHHHhCC
Confidence 578999999999999999998754
No 192
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.23 E-value=0.0047 Score=46.25 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999885
No 193
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.23 E-value=0.016 Score=59.07 Aligned_cols=98 Identities=22% Similarity=0.292 Sum_probs=59.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+-|||..|.|||-|++++++.....+.=..++.+ +.+.+..++...+.. +..+..++.. .-=++
T Consensus 116 lfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~------~se~f~~~~v~a~~~--------~~~~~Fk~~y--~~dll 179 (408)
T COG0593 116 LFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL------TSEDFTNDFVKALRD--------NEMEKFKEKY--SLDLL 179 (408)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec------cHHHHHHHHHHHHHh--------hhHHHHHHhh--ccCee
Confidence 6799999999999999999998765222234444 344555555555432 2345556555 44578
Q ss_pred EEcCCCCCc---chhh-hhhccCC-CCCCcEEEEeeccc
Q 047700 82 ILDDIWANI---DLET-VGILFGG-AHRGCKILLTPRYQ 115 (629)
Q Consensus 82 VlDdv~~~~---~~~~-l~~~~~~-~~~gs~ilvTTR~~ 115 (629)
++||++-.. .|+. +...|.. ...|-.||+|++..
T Consensus 180 lIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~ 218 (408)
T COG0593 180 LIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRP 218 (408)
T ss_pred eechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCC
Confidence 899997542 2332 2222211 22344888888644
No 194
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.19 E-value=0.023 Score=56.54 Aligned_cols=80 Identities=25% Similarity=0.277 Sum_probs=52.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCc------ccCCCHHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLE------LCKGTESERARTLFDQL 74 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------~~~~~~~~~~~~l~~~l 74 (629)
++-|+|..|+||||||..++-..... -..++||+....++.. .+.+++.+ ....+.++....+...+
T Consensus 57 iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 57 IIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 35699999999999999887776543 4567899987777753 23344332 11123344444444444
Q ss_pred c-CCcEEEEEcCCC
Q 047700 75 W-KEKILIILDDIW 87 (629)
Q Consensus 75 ~-~k~~LlVlDdv~ 87 (629)
+ +.--++|+|.|-
T Consensus 130 ~s~~~~lIVIDSva 143 (325)
T cd00983 130 RSGAVDLIVVDSVA 143 (325)
T ss_pred hccCCCEEEEcchH
Confidence 4 567789999975
No 195
>PRK09354 recA recombinase A; Provisional
Probab=96.18 E-value=0.024 Score=56.79 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=53.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcc------cCCCHHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLEL------CKGTESERARTLFDQL 74 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~l 74 (629)
|+-|+|..|+||||||-++....... -..++||+.-..++.. .+++++.+. .....++....+...+
T Consensus 62 IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 62 IVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 35699999999999998887776543 4677899988877753 344454321 1123344444454444
Q ss_pred c-CCcEEEEEcCCC
Q 047700 75 W-KEKILIILDDIW 87 (629)
Q Consensus 75 ~-~k~~LlVlDdv~ 87 (629)
+ ++--+||+|-|-
T Consensus 135 ~s~~~~lIVIDSva 148 (349)
T PRK09354 135 RSGAVDLIVVDSVA 148 (349)
T ss_pred hcCCCCEEEEeChh
Confidence 4 567789999985
No 196
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.15 E-value=0.011 Score=54.65 Aligned_cols=44 Identities=27% Similarity=0.397 Sum_probs=32.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEK 45 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 45 (629)
+|+|.|.||+||||+|..+......++.| .+.=|+..+.+++.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL~~ 45 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNLPE 45 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCChHH
Confidence 48999999999999999977766555433 344577777776544
No 197
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.13 E-value=0.035 Score=56.43 Aligned_cols=88 Identities=23% Similarity=0.236 Sum_probs=58.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCc-ccCCCHHHHHHHHHHHHcC--Cc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLE-LCKGTESERARTLFDQLWK--EK 78 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~l~~~l~~--k~ 78 (629)
+-|.|-.|.|||.+...++.+......=-.++.+.+-.=-...+++..|+..+-.. .......+..+.+.+...+ +.
T Consensus 178 lYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~ 257 (529)
T KOG2227|consen 178 LYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFM 257 (529)
T ss_pred eEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccce
Confidence 45889999999999999999976542223456666544345678888888877222 2222223445566666653 36
Q ss_pred EEEEEcCCCCC
Q 047700 79 ILIILDDIWAN 89 (629)
Q Consensus 79 ~LlVlDdv~~~ 89 (629)
+++|+|..+.-
T Consensus 258 ~llVlDEmD~L 268 (529)
T KOG2227|consen 258 LLLVLDEMDHL 268 (529)
T ss_pred EEEEechhhHH
Confidence 99999999644
No 198
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.12 E-value=0.015 Score=51.05 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=54.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHH-HHHHHHHHHcCCcE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESE-RARTLFDQLWKEKI 79 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~l~~~l~~k~~ 79 (629)
+++|+|..|.|||||++.+...... ..+.++++-.. .++- ....+..+ ..-.+...+-.+.-
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~~-------------~i~~-~~~lS~G~~~rv~laral~~~p~ 90 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGSTV-------------KIGY-FEQLSGGEKMRLALAKLLLENPN 90 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCeE-------------EEEE-EccCCHHHHHHHHHHHHHhcCCC
Confidence 4789999999999999999876543 34555543100 0000 00011111 12234445556777
Q ss_pred EEEEcCCCCC---cchhhhhhccCCCCCCcEEEEeecccccc
Q 047700 80 LIILDDIWAN---IDLETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 80 LlVlDdv~~~---~~~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
++++|+.-.. +..+.+...+... +..|+++|.+.+.+
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 8889987644 2233333333222 24688888776554
No 199
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.12 E-value=0.021 Score=59.43 Aligned_cols=112 Identities=11% Similarity=0.134 Sum_probs=54.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE-eCCCcCHHHHHHHHHHHhCCc-----ccCCCHHHHHHHHHHHH-
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVL-KSSTANVEKIQDEIAEQLGLE-----LCKGTESERARTLFDQL- 74 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~l~~~l- 74 (629)
+-++|+.|+||||+|..+.+...-.......-|.. +...-....-.+.+....... .......+.+..+.+.+
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~ 120 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVR 120 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHh
Confidence 35899999999999999988764321111111110 000001111111111111000 00001011222333334
Q ss_pred ----cCCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeec
Q 047700 75 ----WKEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPR 113 (629)
Q Consensus 75 ----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR 113 (629)
.+++-++|+|+++.. ..++.+...+......+.+|++|.
T Consensus 121 ~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 121 YGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred hchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 256678899999865 357777777755555666665553
No 200
>CHL00176 ftsH cell division protein; Validated
Probab=96.12 E-value=0.018 Score=63.02 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
|-++|..|+|||++|+++++....
T Consensus 219 VLL~GPpGTGKT~LAralA~e~~~ 242 (638)
T CHL00176 219 VLLVGPPGTGKTLLAKAIAGEAEV 242 (638)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 568999999999999999887643
No 201
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.11 E-value=0.016 Score=65.40 Aligned_cols=88 Identities=15% Similarity=0.068 Sum_probs=47.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCC-cEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKE-KIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k-~~L 80 (629)
+-++|+.|+|||+||+.+.... +...+.++.|+-.+.. .+.+-++...+-...+ ....+.+.++.+ .-+
T Consensus 487 ~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~----~~~~lig~~~gyvg~~-~~~~l~~~~~~~p~~V 556 (731)
T TIGR02639 487 FLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKH----TVSRLIGAPPGYVGFE-QGGLLTEAVRKHPHCV 556 (731)
T ss_pred EEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcc----cHHHHhcCCCCCcccc-hhhHHHHHHHhCCCeE
Confidence 5689999999999999998765 2334556655422211 1222233221111111 112344455433 458
Q ss_pred EEEcCCCCC--cchhhhhhcc
Q 047700 81 IILDDIWAN--IDLETVGILF 99 (629)
Q Consensus 81 lVlDdv~~~--~~~~~l~~~~ 99 (629)
++||+++.. +.++.+...+
T Consensus 557 vllDEieka~~~~~~~Ll~~l 577 (731)
T TIGR02639 557 LLLDEIEKAHPDIYNILLQVM 577 (731)
T ss_pred EEEechhhcCHHHHHHHHHhh
Confidence 999999865 3344444444
No 202
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.11 E-value=0.028 Score=56.61 Aligned_cols=54 Identities=30% Similarity=0.475 Sum_probs=39.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCeEEEEEeCCCcCHHHHHHHHHHHhC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEK----LFDQVVFVLKSSTANVEKIQDEIAEQLG 55 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 55 (629)
|+-|+|.+|+|||++|..++-...... .=..++||+....|+...+.+ +++.++
T Consensus 104 vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 104 ITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred EEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 356999999999999998876643321 114789999999998877764 444443
No 203
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.11 E-value=0.04 Score=50.58 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=21.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
||.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998865
No 204
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.10 E-value=0.023 Score=60.99 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+-++|+.|+||||+|+.+.+...
T Consensus 41 ~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 41 YIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999987753
No 205
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.10 E-value=0.14 Score=55.57 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+-++|..|+||||+|+.+.+...
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999987643
No 206
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.10 E-value=0.013 Score=54.54 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=59.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS-TANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKI 79 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 79 (629)
+|.|+|..|+||||+++.+....... ...+++.-... .+.... ...+..+- +. ..+.....+.++..++...=
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~e~~~E~~~~~-~~~~i~q~--~v-g~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTIEDPIEFVHES-KRSLINQR--EV-GLDTLSFENALKAALRQDPD 76 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEEcCCccccccC-ccceeeec--cc-CCCccCHHHHHHHHhcCCcC
Confidence 47899999999999999887765432 34444432211 111000 00111110 00 11112234456677776777
Q ss_pred EEEEcCCCCCcchhhhhhccCCCCCCcEEEEeecccccc
Q 047700 80 LIILDDIWANIDLETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 80 LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
.+++|++.+.+........ ...|-.++.|+...++.
T Consensus 77 ~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 77 VILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred EEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 9999999766554443332 23455677777766554
No 207
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.09 E-value=0.036 Score=57.51 Aligned_cols=85 Identities=22% Similarity=0.381 Sum_probs=56.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHH------HH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESE------RA 67 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------~~ 67 (629)
++|.|.+|+|||+|+..+...... .+-+.++++-+.+.. .+.++.+++...-..+ ..++.... .+
T Consensus 141 ~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a 219 (449)
T TIGR03305 141 AGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTA 219 (449)
T ss_pred EEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999999999887553 234788899887765 4677777766432111 12222222 12
Q ss_pred HHHHHHHc---CCcEEEEEcCCC
Q 047700 68 RTLFDQLW---KEKILIILDDIW 87 (629)
Q Consensus 68 ~~l~~~l~---~k~~LlVlDdv~ 87 (629)
-.+.++++ |+++|+++||+-
T Consensus 220 ~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 220 LTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHhcCCceEEEecChH
Confidence 34455543 799999999994
No 208
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.09 E-value=0.049 Score=49.48 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=22.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
|+.++|++|+||||+++.+.......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999998876644
No 209
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.08 E-value=0.019 Score=51.23 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=59.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-----------c-CHHHHHHHHHHHhCCcccC---CCHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSST-----------A-NVEKIQDEIAEQLGLELCK---GTESE 65 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----------~-~~~~~~~~i~~~l~~~~~~---~~~~~ 65 (629)
++.|.|++|+|||||+++++++. + |...+-.+-.++ | +.+++.+.|..+--.++.. .--..
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~--~--l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT 81 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD--K--LRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT 81 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc--C--eEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence 47899999999999999999987 2 433333332111 2 4567766665544333221 10111
Q ss_pred HHHHHHHHHc-CCcEEEEEcCCCCCcchhhhhhccCCCCCCcEEEEeecccccc
Q 047700 66 RARTLFDQLW-KEKILIILDDIWANIDLETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 66 ~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
....+.+.+. |+.+++.+|=- .-.++...++ +.-.|.+..-+...+
T Consensus 82 ~~~~ve~~~~~G~~vildId~q----Ga~qvk~~~p---~~v~IFi~pPs~eeL 128 (191)
T COG0194 82 SREPVEQALAEGKDVILDIDVQ----GALQVKKKMP---NAVSIFILPPSLEEL 128 (191)
T ss_pred cHHHHHHHHhcCCeEEEEEehH----HHHHHHHhCC---CeEEEEEcCCCHHHH
Confidence 2344555555 77777776521 2233444443 344566666555554
No 210
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.07 E-value=0.019 Score=52.43 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=57.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCC--c-------------ccCCCHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGL--E-------------LCKGTESE 65 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~--~-------------~~~~~~~~ 65 (629)
+++|+|..|+|||||++.+..-... -.+.+++.-. ++......+-+.++- + ....+..+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~ 103 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGE 103 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHH
Confidence 4789999999999999999876442 2334443211 111111111111100 0 11111122
Q ss_pred -HHHHHHHHHcCCcEEEEEcCCCCCcc---hhhhhhccCCCCCCcEEEEeecccccc
Q 047700 66 -RARTLFDQLWKEKILIILDDIWANID---LETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 66 -~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
..-.+...+-.++-++++|+.-..-+ .+.+...+.....+..||++|.+.+.+
T Consensus 104 ~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 104 RQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 12344555557888899999865411 222222221112367888888877654
No 211
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.07 E-value=0.056 Score=48.40 Aligned_cols=101 Identities=16% Similarity=0.131 Sum_probs=60.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCC------------------CCeEEEEEeCCC---cCHHHHHHHHHHHhCCcccC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKL------------------FDQVVFVLKSST---ANVEKIQDEIAEQLGLELCK 60 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~------------------F~~~~wv~vs~~---~~~~~~~~~i~~~l~~~~~~ 60 (629)
+-++|..|+||+|+|..+.+..--... ..-..|+.-.+. ..++++. ++...+.....
T Consensus 22 ~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir-~i~~~~~~~~~- 99 (162)
T PF13177_consen 22 LLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIR-EIIEFLSLSPS- 99 (162)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHH-HHHHHCTSS-T-
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHH-HHHHHHHHHHh-
Confidence 458999999999999998876432211 222333333222 2333333 34333322211
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccccc
Q 047700 61 GTESERARTLFDQLWKEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 61 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
.+++=++|+||++.. +..+.|...+-....++++|++|++.+-.
T Consensus 100 --------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~i 145 (162)
T PF13177_consen 100 --------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKI 145 (162)
T ss_dssp --------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS
T ss_pred --------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHC
Confidence 156778999999865 45666766665556688899888877643
No 212
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.05 E-value=0.11 Score=58.85 Aligned_cols=40 Identities=8% Similarity=0.097 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeeccc
Q 047700 76 KEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQ 115 (629)
Q Consensus 76 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~ 115 (629)
++.-++|||+++.. ...+.|...+..-...+.+|++|.+.
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~ 160 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEP 160 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 66668889999866 44666777776555566666555443
No 213
>PTZ00301 uridine kinase; Provisional
Probab=96.04 E-value=0.0045 Score=57.85 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|||.|.+|+||||||+.+.+...
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHH
Confidence 689999999999999999988764
No 214
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.02 E-value=0.025 Score=58.59 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=49.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCc------ccCCCHHH------HHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLE------LCKGTESE------RAR 68 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------~~~~~~~~------~~~ 68 (629)
.++|+|..|+|||||++.+...... ..+++++.--+.-++.++.++.+...... ..++.... ..-
T Consensus 167 ri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~ 243 (450)
T PRK06002 167 RIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTAT 243 (450)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 3789999999999999988765432 33455554334445665555444433211 11111111 122
Q ss_pred HHHHHHc--CCcEEEEEcCCC
Q 047700 69 TLFDQLW--KEKILIILDDIW 87 (629)
Q Consensus 69 ~l~~~l~--~k~~LlVlDdv~ 87 (629)
.+.++++ |+.+|+++||+-
T Consensus 244 ~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 244 AIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHcCCCEEEeccchH
Confidence 3444443 999999999993
No 215
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.02 E-value=0.02 Score=57.05 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
.++|||..|.|||.+|+++++.....
T Consensus 150 gllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 47899999999999999999997653
No 216
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.17 Score=53.93 Aligned_cols=21 Identities=29% Similarity=0.183 Sum_probs=18.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHh
Q 047700 3 GVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 3 ~i~G~gG~GKTtLa~~v~~~~ 23 (629)
-++|..|+||||+|+.+....
T Consensus 42 Lf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 42 IFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999988764
No 217
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.01 E-value=0.028 Score=50.57 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=50.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcC--Cc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWK--EK 78 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~--k~ 78 (629)
++-|.|..|+|||++|..+... ....++++.-.+.+|. ++.+.|.+............+....+.+.+.. +.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence 4679999999999999988654 2346778877777766 46666665543333333322323334444421 23
Q ss_pred EEEEEcCC
Q 047700 79 ILIILDDI 86 (629)
Q Consensus 79 ~LlVlDdv 86 (629)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 36889987
No 218
>PRK08149 ATP synthase SpaL; Validated
Probab=96.00 E-value=0.03 Score=57.82 Aligned_cols=82 Identities=18% Similarity=0.317 Sum_probs=51.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCc-------ccCCCHHH------HH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSST-ANVEKIQDEIAEQLGLE-------LCKGTESE------RA 67 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~------~~ 67 (629)
++|+|..|+|||||++.++.... -+.++...+... .++.++.++.......+ ..++.... .+
T Consensus 154 i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a 229 (428)
T PRK08149 154 MGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVA 229 (428)
T ss_pred EEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHH
Confidence 79999999999999999987543 344445555443 45667777666543221 11222211 12
Q ss_pred HHHHHHH--cCCcEEEEEcCCC
Q 047700 68 RTLFDQL--WKEKILIILDDIW 87 (629)
Q Consensus 68 ~~l~~~l--~~k~~LlVlDdv~ 87 (629)
..+.+++ +||++|+++||+-
T Consensus 230 ~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 230 TTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHcCCCEEEEccchH
Confidence 3344444 3999999999994
No 219
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.97 E-value=0.0093 Score=53.58 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=59.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC--cCHHHHHHHHHHHhCCcccCCCHHH-HHHHHHHHHcCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSST--ANVEKIQDEIAEQLGLELCKGTESE-RARTLFDQLWKE 77 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~l~~~l~~k 77 (629)
+++|+|..|+|||||.+.+...... ..+.++++-... .+..+..+ ..++- ....+..+ ..-.+...+-.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~---~~i~~-~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKP---DSGEILVDGKEVSFASPRDARR---AGIAM-VYQLSVGERQMVEIARALARN 100 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEECCcCCHHHHHh---cCeEE-EEecCHHHHHHHHHHHHHhcC
Confidence 4789999999999999999876542 456666532111 11111111 11111 01122222 223455555677
Q ss_pred cEEEEEcCCCCC---cchhhhhhccCC-CCCCcEEEEeeccccc
Q 047700 78 KILIILDDIWAN---IDLETVGILFGG-AHRGCKILLTPRYQNV 117 (629)
Q Consensus 78 ~~LlVlDdv~~~---~~~~~l~~~~~~-~~~gs~ilvTTR~~~v 117 (629)
+-++++|+.-.. ...+.+...+.. ...|..||++|.+...
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 888899998644 122233333321 1236678888888764
No 220
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.96 E-value=0.032 Score=60.29 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=63.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcc------cCCCHHHHHHHHHHHH-
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLEL------CKGTESERARTLFDQL- 74 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~l- 74 (629)
+-++|..|+||||+|+.+.+..-.....+. ...+.....+.|......+. ..... +.++.+.+.+
T Consensus 41 ~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g~hpDv~eId~a~~~~I-d~iR~L~~~~~ 112 (624)
T PRK14959 41 YLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQGMHVDVVEIDGASNRGI-DDAKRLKEAIG 112 (624)
T ss_pred EEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcCCCCceEEEecccccCH-HHHHHHHHHHH
Confidence 347999999999999999887642211100 01111111122211111100 00001 1112222222
Q ss_pred ----cCCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeeccc-cccc----cc--ccCCCCChHHHHHHHHHH
Q 047700 75 ----WKEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQ-NVLV----SE--MHSKNKPLAEWKDALQKL 139 (629)
Q Consensus 75 ----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~-~v~~----~~--~~l~~~~~~~w~~~~~~~ 139 (629)
.+++-++|+|+++.. ...+.|...+........+|++|.+. .+.. ++ ..+...+..++...+...
T Consensus 113 ~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~i 190 (624)
T PRK14959 113 YAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKV 190 (624)
T ss_pred hhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHH
Confidence 366779999999765 34556666654333445565655543 3321 11 114455677776656554
No 221
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.95 E-value=0.04 Score=53.11 Aligned_cols=93 Identities=16% Similarity=0.234 Sum_probs=55.1
Q ss_pred EEEEcCCCCcHHHHH-HHHHHHhhhcCCCCeE-EEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHHH-----
Q 047700 2 IGVYGIGGIGKTTLM-HEVLFEAKKEKLFDQV-VFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESER----- 66 (629)
Q Consensus 2 i~i~G~gG~GKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 66 (629)
++|.|..|+|||+|| +++.+... -+.+ +++-+.+.. .+.++.+++...-..+ ..++.....
T Consensus 72 ~~Ifg~~g~GKt~L~l~~i~~~~~----~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~ 147 (274)
T cd01132 72 ELIIGDRQTGKTAIAIDTIINQKG----KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPY 147 (274)
T ss_pred EEeeCCCCCCccHHHHHHHHHhcC----CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHH
Confidence 689999999999995 77766432 4555 667777765 4677777666432111 112212111
Q ss_pred -HHHHHHHH--cCCcEEEEEcCCCCC-cchhhhhhc
Q 047700 67 -ARTLFDQL--WKEKILIILDDIWAN-IDLETVGIL 98 (629)
Q Consensus 67 -~~~l~~~l--~~k~~LlVlDdv~~~-~~~~~l~~~ 98 (629)
+-.+.+++ +|+.+|+++||+-.- ..++++...
T Consensus 148 ~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~ 183 (274)
T cd01132 148 TGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLL 183 (274)
T ss_pred HHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHHh
Confidence 22333333 389999999999433 234444333
No 222
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.95 E-value=0.039 Score=52.82 Aligned_cols=50 Identities=24% Similarity=0.228 Sum_probs=32.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe--CCCcCHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLK--SSTANVEKIQDEIAE 52 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~ 52 (629)
||+|.|..|+||||+|+.+.......+. .+..++. -..++..+..+.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~--~v~vI~~D~yyr~~r~~~~~~~~~ 52 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGI--HPAVVEGDSFHRYERMEMKMAIAE 52 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCC--ceEEEeccccccCCchhHHHHHHH
Confidence 7999999999999999999887654321 2334433 223444454444443
No 223
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.95 E-value=0.013 Score=61.91 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+-++|+.|+|||++|+++++....
T Consensus 219 ILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 219 VLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred eEEECCCCCcHHHHHHHHHHhhcc
Confidence 568999999999999999998653
No 224
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.93 E-value=0.034 Score=52.57 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
||||.|..|+||||+|+.+......
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 6999999999999999999988653
No 225
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.92 E-value=0.0052 Score=57.75 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
||+|+|.+|+||||||+.+.....
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999988754
No 226
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.91 E-value=0.036 Score=49.95 Aligned_cols=110 Identities=10% Similarity=0.070 Sum_probs=57.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE-------EeCCCc--CHHHHHHHHHHHhCCcccCCCHHH-HHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV-------LKSSTA--NVEKIQDEIAEQLGLELCKGTESE-RARTL 70 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv-------~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~-~~~~l 70 (629)
+++|+|..|+|||||++.+....... .+.+++ .+.+.. ....+.+.+.-. .....+..+ ..-.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 47899999999999999998775432 222222 122221 111333333211 112222222 22344
Q ss_pred HHHHcCCcEEEEEcCCCCC---cchhhhhhccCCCCCCcEEEEeecccccc
Q 047700 71 FDQLWKEKILIILDDIWAN---IDLETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 71 ~~~l~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
...+-.++=++++|+--.. ...+.+...+... +..||++|.+....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 5555577788889987544 1222233333222 35788888876653
No 227
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.89 E-value=0.021 Score=65.49 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=47.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCC-cEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKE-KIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k-~~L 80 (629)
+.++|..|+|||++|+.+....... -...+.+++|.-.+... +.+-++...+--..++ ...+.+.++.+ .-+
T Consensus 598 ~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~----~~~l~g~~~g~~g~~~-~g~l~~~v~~~p~~v 670 (852)
T TIGR03346 598 FLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS----VARLIGAPPGYVGYEE-GGQLTEAVRRKPYSV 670 (852)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch----HHHhcCCCCCccCccc-ccHHHHHHHcCCCcE
Confidence 5689999999999999998875422 23344555554322111 1111222111000000 11233344333 348
Q ss_pred EEEcCCCCC--cchhhhhhcc
Q 047700 81 IILDDIWAN--IDLETVGILF 99 (629)
Q Consensus 81 lVlDdv~~~--~~~~~l~~~~ 99 (629)
|+||++... +.++.+...+
T Consensus 671 lllDeieka~~~v~~~Ll~~l 691 (852)
T TIGR03346 671 VLFDEVEKAHPDVFNVLLQVL 691 (852)
T ss_pred EEEeccccCCHHHHHHHHHHH
Confidence 899999865 4455555544
No 228
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.88 E-value=0.067 Score=47.17 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
||.|+|..|+||||+|+.+......
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999887653
No 229
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.88 E-value=0.05 Score=55.99 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=52.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc--------------------CCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE--------------------KLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKG 61 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 61 (629)
+-++|..|+||||+|+.+....... .+++. ++++.+......+ .++++..+...
T Consensus 39 ~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~~~---- 112 (355)
T TIGR02397 39 YLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEIDAASNNGVDD-IREILDNVKYA---- 112 (355)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEeeccccCCHHH-HHHHHHHHhcC----
Confidence 3589999999999999998775321 12222 2332221111111 12222222110
Q ss_pred CHHHHHHHHHHHHcCCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccc
Q 047700 62 TESERARTLFDQLWKEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQN 116 (629)
Q Consensus 62 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~ 116 (629)
-..+++-++|+|+++.. ...+.+...+......+.+|++|.+.+
T Consensus 113 -----------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~ 158 (355)
T TIGR02397 113 -----------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPH 158 (355)
T ss_pred -----------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHH
Confidence 01245668889998755 345566666644445667677775544
No 230
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.87 E-value=0.036 Score=55.34 Aligned_cols=55 Identities=27% Similarity=0.372 Sum_probs=40.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc----CCCCeEEEEEeCCCcCHHHHHHHHHHHhCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE----KLFDQVVFVLKSSTANVEKIQDEIAEQLGL 56 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 56 (629)
|+-|+|..|+|||+||..++-..... +.=..++||+....|+.+.+.+ ++++++.
T Consensus 98 iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 98 ITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred EEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 34599999999999998776543321 1224689999999999888765 5666654
No 231
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.87 E-value=0.036 Score=53.93 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=61.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE---eCCCcCHHHHHHHHH--HH--hCCcccCCCHHHHHHHHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVL---KSSTANVEKIQDEIA--EQ--LGLELCKGTESERARTLFDQL 74 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~~i~--~~--l~~~~~~~~~~~~~~~l~~~l 74 (629)
++|+|..|+|||||++.+...... ..+.+++. +...-+..++...+. -+ ++......+......-+...+
T Consensus 114 ~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i 190 (270)
T TIGR02858 114 TLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLI 190 (270)
T ss_pred EEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHH
Confidence 589999999999999999877653 23444432 221111223322110 00 011111111111122344444
Q ss_pred c-CCcEEEEEcCCCCCcchhhhhhccCCCCCCcEEEEeeccccc
Q 047700 75 W-KEKILIILDDIWANIDLETVGILFGGAHRGCKILLTPRYQNV 117 (629)
Q Consensus 75 ~-~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v 117 (629)
. ..+-++++|.+...+....+...+. .|..||+||.+..+
T Consensus 191 ~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 191 RSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 4 5788999999977666666655542 47789999987666
No 232
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.86 E-value=0.038 Score=57.12 Aligned_cols=82 Identities=22% Similarity=0.414 Sum_probs=53.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHHH------H
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESER------A 67 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~------~ 67 (629)
++|.|..|+|||||++.+++... -+.++++-+.+.. .+.++.++.+..-+.+ ..++..... +
T Consensus 165 ~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a 240 (439)
T PRK06936 165 MGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVA 240 (439)
T ss_pred EEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHH
Confidence 78999999999999999998765 3567788777764 4566655544332111 112222221 2
Q ss_pred HHHHHHH--cCCcEEEEEcCCC
Q 047700 68 RTLFDQL--WKEKILIILDDIW 87 (629)
Q Consensus 68 ~~l~~~l--~~k~~LlVlDdv~ 87 (629)
..+.+++ +||++|+++||+-
T Consensus 241 ~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 241 TSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHcCCCEEEeccchh
Confidence 2344444 4999999999993
No 233
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.83 E-value=0.0062 Score=57.36 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=21.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|.|.+|+||||||+.++...
T Consensus 8 iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 8 IIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 234
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.82 E-value=0.039 Score=60.02 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+-++|..|+||||+|+.+.+..-
T Consensus 49 ~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 49 FMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred EEEECCCCCCHHHHHHHHHHhhC
Confidence 45899999999999999988753
No 235
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.82 E-value=0.022 Score=60.97 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=52.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHc--CCc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLW--KEK 78 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~--~k~ 78 (629)
|+-++|.+|+||||||.-|+.+.- | .++=|++|..-....+-..|...+.... .+. ++.
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s--------------~l~adsrP 388 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHS--------------VLDADSRP 388 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcc--------------ccccCCCc
Confidence 467899999999999999987743 3 4566788888888888777766664321 121 778
Q ss_pred EEEEEcCCCCC
Q 047700 79 ILIILDDIWAN 89 (629)
Q Consensus 79 ~LlVlDdv~~~ 89 (629)
.-||+|.++..
T Consensus 389 ~CLViDEIDGa 399 (877)
T KOG1969|consen 389 VCLVIDEIDGA 399 (877)
T ss_pred ceEEEecccCC
Confidence 89999999765
No 236
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.81 E-value=0.051 Score=59.60 Aligned_cols=131 Identities=13% Similarity=0.149 Sum_probs=63.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcc------cCCCHHHHHHHHHHHHc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLEL------CKGTESERARTLFDQLW 75 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~l~ 75 (629)
+-++|..|+||||+|+.+.+.......+. . ....+.....+.|....+.+. .....++ +..+.+.+.
T Consensus 41 ~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~-~-----~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~-ir~ii~~~~ 113 (585)
T PRK14950 41 YLFTGPRGVGKTSTARILAKAVNCTTNDP-K-----GRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDD-AREIIERVQ 113 (585)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCC-C-----CCCCccCHHHHHHhcCCCCeEEEEeccccCCHHH-HHHHHHHHh
Confidence 35899999999999999987754211100 0 001111222333332222110 0111111 222223222
Q ss_pred -----CCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccc-cccc------cccCCCCChHHHHHHHHHH
Q 047700 76 -----KEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQN-VLVS------EMHSKNKPLAEWKDALQKL 139 (629)
Q Consensus 76 -----~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~------~~~l~~~~~~~w~~~~~~~ 139 (629)
+++-++|+|+++.. +..+.|...+......+.+|++|.+.+ +... ...+...+..++...+...
T Consensus 114 ~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~ 191 (585)
T PRK14950 114 FRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKI 191 (585)
T ss_pred hCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHH
Confidence 56778999999755 345666666544445566666664432 2221 1113344555555555544
No 237
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.80 E-value=0.047 Score=55.34 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=61.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcC-------------------CCCeEEEEEeCCCcC---HHHHHHHHHHHhCCccc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEK-------------------LFDQVVFVLKSSTAN---VEKIQDEIAEQLGLELC 59 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs~~~~---~~~~~~~i~~~l~~~~~ 59 (629)
+-++|+.|+||||+|..+.+..--.. ..+-+..+..|.... ..+..+++.+.......
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~ 106 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPL 106 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCCC
Confidence 45899999999999999998854221 123444555555444 34444445444432211
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEEcCCCCCc--chhhhhhccCCCCCCcEEEEeecccc
Q 047700 60 KGTESERARTLFDQLWKEKILIILDDIWANI--DLETVGILFGGAHRGCKILLTPRYQN 116 (629)
Q Consensus 60 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~~~ 116 (629)
.++.-++++|+++... .-+.+...+-.....++++++|.+..
T Consensus 107 ---------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~ 150 (325)
T COG0470 107 ---------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPS 150 (325)
T ss_pred ---------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChh
Confidence 3678889999997652 23445444444456677777777443
No 238
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.78 E-value=0.05 Score=59.36 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+-++|..|+||||+|+.+.+..-
T Consensus 41 ~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 41 YIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999987754
No 239
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.73 E-value=0.0075 Score=55.62 Aligned_cols=26 Identities=38% Similarity=0.495 Sum_probs=23.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
+|||.|.+|+||||+|+.++......
T Consensus 10 iIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 58999999999999999999987643
No 240
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.72 E-value=0.25 Score=54.25 Aligned_cols=121 Identities=15% Similarity=0.136 Sum_probs=64.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh---------------------cCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK---------------------EKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCK 60 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~---------------------~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 60 (629)
+-++|..|+||||+|+.+...... ..+|+. ..++.+....+.++. ++++++....
T Consensus 42 yLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ld~~~~~~vd~Ir-~li~~~~~~P-- 117 (614)
T PRK14971 42 YLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HELDAASNNSVDDIR-NLIEQVRIPP-- 117 (614)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEecccccCCHHHHH-HHHHHHhhCc--
Confidence 458999999999999988776431 113332 222332222222222 2222221100
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEee-cccccccc----ccc--CCCCChHH
Q 047700 61 GTESERARTLFDQLWKEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTP-RYQNVLVS----EMH--SKNKPLAE 131 (629)
Q Consensus 61 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTT-R~~~v~~~----~~~--l~~~~~~~ 131 (629)
..+++-++|+|+++.. ...+.+...+..-...+.+|++| +...+.+. +.. +...+.++
T Consensus 118 -------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~e 184 (614)
T PRK14971 118 -------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVAD 184 (614)
T ss_pred -------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHH
Confidence 1145668899999765 34666777665444556655555 43444321 111 34456666
Q ss_pred HHHHHHHH
Q 047700 132 WKDALQKL 139 (629)
Q Consensus 132 w~~~~~~~ 139 (629)
+...+...
T Consensus 185 i~~~L~~i 192 (614)
T PRK14971 185 IVNHLQYV 192 (614)
T ss_pred HHHHHHHH
Confidence 66555544
No 241
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.72 E-value=0.068 Score=55.24 Aligned_cols=56 Identities=21% Similarity=0.228 Sum_probs=32.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS-TANVEKIQDEIAEQLGL 56 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~ 56 (629)
+++++|..|+||||++.++.........-+.+..++... .....+-+....+-++.
T Consensus 193 vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGv 249 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGV 249 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCC
Confidence 589999999999999998877543221223444444322 12233334444444443
No 242
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.72 E-value=0.0081 Score=56.03 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
||+|.|..|+||||+|+++..-.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998765
No 243
>COG3903 Predicted ATPase [General function prediction only]
Probab=95.71 E-value=0.0043 Score=62.05 Aligned_cols=112 Identities=27% Similarity=0.347 Sum_probs=74.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCC-CeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLF-DQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~L 80 (629)
+.++|.|||||||++-.+.. .+.. | +.+.+|+..+--|...+.-.+...++...... +.-...+..++..+|.+
T Consensus 17 vtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~~rr~l 91 (414)
T COG3903 17 VTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIGDRRAL 91 (414)
T ss_pred eeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHhhhhHH
Confidence 68999999999999999888 5544 7 66777877776666666655566565432111 11234566677789999
Q ss_pred EEEcCCCCC-cchhhhhhccCCCCCCcEEEEeecccccc
Q 047700 81 IILDDIWAN-IDLETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 81 lVlDdv~~~-~~~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
+|+||.... ++-..+...+..+...-.|+.|+|..-..
T Consensus 92 lvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~ 130 (414)
T COG3903 92 LVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV 130 (414)
T ss_pred HHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc
Confidence 999998544 22333444444444456788888876544
No 244
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.70 E-value=0.03 Score=64.04 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=46.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHc-CCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLW-KEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~k~~L 80 (629)
+.++|..|+|||++|+.+.+..... -...+.++++.-.. .. .+.+-++...+-...++ ...+.+.++ ...-+
T Consensus 601 ~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~-~~---~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~v 673 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFME-KH---SVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSV 673 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhh-hh---hHHHHhCCCCcccccch-hHHHHHHHHhCCCCe
Confidence 5789999999999999998765321 22334555543211 11 11112232211111111 112333333 23368
Q ss_pred EEEcCCCCC--cchhhhhhcc
Q 047700 81 IILDDIWAN--IDLETVGILF 99 (629)
Q Consensus 81 lVlDdv~~~--~~~~~l~~~~ 99 (629)
|+|||+... +.++.+...+
T Consensus 674 LllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 674 ILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred EEEeehhhCCHHHHHHHHHHH
Confidence 999999855 4455554444
No 245
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.69 E-value=0.049 Score=48.66 Aligned_cols=51 Identities=8% Similarity=0.179 Sum_probs=33.2
Q ss_pred HHHHHHcCCcEEEEEcCCC----CCcchhhhhhccCCCCCCcEEEEeeccccccc
Q 047700 69 TLFDQLWKEKILIILDDIW----ANIDLETVGILFGGAHRGCKILLTPRYQNVLV 119 (629)
Q Consensus 69 ~l~~~l~~k~~LlVlDdv~----~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~ 119 (629)
.|...+-+++-+++-|.-- -.-.|+-+...-.-+..|..|+++|.+.++..
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVN 201 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHH
Confidence 4555556888888888643 22346544322122456899999999998764
No 246
>PRK14974 cell division protein FtsY; Provisional
Probab=95.69 E-value=0.1 Score=52.52 Aligned_cols=86 Identities=23% Similarity=0.277 Sum_probs=46.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcC--HHHHHHHHHHHhCCccc----CCCHHHHH-HHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTAN--VEKIQDEIAEQLGLELC----KGTESERA-RTLFDQ 73 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~----~~~~~~~~-~~l~~~ 73 (629)
||+++|+.|+||||.+.+++...... .+ .++.++. ..|. ..+-++..+..++.... ..+....+ +.+...
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 58899999999999998888776543 23 3334443 2332 23344556666654321 11222222 222221
Q ss_pred HcCCcEEEEEcCCCCC
Q 047700 74 LWKEKILIILDDIWAN 89 (629)
Q Consensus 74 l~~k~~LlVlDdv~~~ 89 (629)
-....-++++|-....
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 1122238888988654
No 247
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.68 E-value=0.0059 Score=33.94 Aligned_cols=21 Identities=38% Similarity=0.368 Sum_probs=15.9
Q ss_pred CccEEEecCCcccccchhhhc
Q 047700 301 KLRGLALSKMQLLSLPQSVHL 321 (629)
Q Consensus 301 ~L~~L~l~~~~~~~lp~~l~~ 321 (629)
+|++||+++|+++.+|+.|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478888888888888876554
No 248
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.68 E-value=0.0071 Score=61.70 Aligned_cols=51 Identities=12% Similarity=0.007 Sum_probs=31.6
Q ss_pred HHHHHHHHc-----CCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeeccccc
Q 047700 67 ARTLFDQLW-----KEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQNV 117 (629)
Q Consensus 67 ~~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v 117 (629)
++.+.+.+. +++.++|+||++.. ...+.+...+.....++.+|++|.+.+.
T Consensus 126 iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~ 183 (365)
T PRK07471 126 VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPAR 183 (365)
T ss_pred HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchh
Confidence 444445543 56778999999755 3455666555444456667777766643
No 249
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.67 E-value=0.018 Score=49.99 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=29.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS 39 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 39 (629)
||+|+|..|+|||||++++.+....+ .+...+..+...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 68999999999999999999998754 466665666544
No 250
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.66 E-value=0.064 Score=55.40 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+-++|..|+||||+|+.+.+...
T Consensus 42 ~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 42 LLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999977754
No 251
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.66 E-value=0.059 Score=56.64 Aligned_cols=85 Identities=15% Similarity=0.217 Sum_probs=46.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCcccC-CCHHHHHHHHHHHHcCCc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS-TANVEKIQDEIAEQLGLELCK-GTESERARTLFDQLWKEK 78 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~~k~ 78 (629)
|++++|..|+||||.+.+++.....+..-..+..|+... .....+-++...+..+..... .+..+.... ...++++
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~a-L~~L~d~- 335 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLA-LSELRNK- 335 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHH-HHhccCC-
Confidence 689999999999999999998765432223455665533 112333344444554433211 112222222 2234444
Q ss_pred EEEEEcCCC
Q 047700 79 ILIILDDIW 87 (629)
Q Consensus 79 ~LlVlDdv~ 87 (629)
-.+++|-..
T Consensus 336 d~VLIDTaG 344 (484)
T PRK06995 336 HIVLIDTIG 344 (484)
T ss_pred CeEEeCCCC
Confidence 466777765
No 252
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.66 E-value=0.024 Score=51.46 Aligned_cols=97 Identities=16% Similarity=0.103 Sum_probs=54.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE------eCCCcCHHHHHHHHHHHhCCcccCCCHHH-HHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVL------KSSTANVEKIQDEIAEQLGLELCKGTESE-RARTLFDQ 73 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~l~~~ 73 (629)
+++|+|..|+|||||++.+..-... ..+.++++ +.+... .+..+ ....+...
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lara 85 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIP---NGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAAA 85 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCC---CCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHHH
Confidence 4799999999999999999876443 23434332 111111 11111 22344555
Q ss_pred HcCCcEEEEEcCCCCCc---chhhhhhccCC--CCCCcEEEEeecccccc
Q 047700 74 LWKEKILIILDDIWANI---DLETVGILFGG--AHRGCKILLTPRYQNVL 118 (629)
Q Consensus 74 l~~k~~LlVlDdv~~~~---~~~~l~~~~~~--~~~gs~ilvTTR~~~v~ 118 (629)
+-.+.-++++|+--..- ..+.+...+.. ...+..||++|.+...+
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVL 135 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 55778888999975441 12222222211 11235688888877654
No 253
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.66 E-value=0.067 Score=55.91 Aligned_cols=86 Identities=22% Similarity=0.237 Sum_probs=55.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCC--eEEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHH------
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFD--QVVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESE------ 65 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------ 65 (629)
++|.|-.|+|||||+.++.+....++.+. .++++-+.+.. .+.++.+++...-..+ ..++....
T Consensus 144 ~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~ 223 (458)
T TIGR01041 144 LPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPR 223 (458)
T ss_pred EEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 68999999999999999998876542232 55677777754 4677777766442211 12222211
Q ss_pred HHHHHHHHHc---CCcEEEEEcCCC
Q 047700 66 RARTLFDQLW---KEKILIILDDIW 87 (629)
Q Consensus 66 ~~~~l~~~l~---~k~~LlVlDdv~ 87 (629)
....+.++.+ |+++|+++||+-
T Consensus 224 ~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 224 MALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHccCCcEEEEEcChh
Confidence 1233445544 889999999993
No 254
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.65 E-value=0.0079 Score=54.72 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=22.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|-||=|+||||||+++.+...
T Consensus 6 ~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 6 VIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred EEEEecccccCHHHHHHHHHHHhC
Confidence 589999999999999999998866
No 255
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.64 E-value=0.0097 Score=54.36 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=21.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
||+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999998874
No 256
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.63 E-value=0.094 Score=50.84 Aligned_cols=53 Identities=30% Similarity=0.433 Sum_probs=38.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc----CCCCeEEEEEeCCCcCHHHHHHHHHHHhC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE----KLFDQVVFVLKSSTANVEKIQDEIAEQLG 55 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 55 (629)
.=|+|.+|+|||+||-.++=..... +.=..++||+-...|..+.+.+ |+++.+
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~~ 97 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERFG 97 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHTT
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhccc
Confidence 4589999999999998887654322 1224588999999999888764 666543
No 257
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.63 E-value=0.063 Score=54.15 Aligned_cols=86 Identities=21% Similarity=0.292 Sum_probs=51.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCcc-cCCCHHHHHHHHHHHHc--C
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGLEL-CKGTESERARTLFDQLW--K 76 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~--~ 76 (629)
+++|+|..|+||||++..+......++ ..+.+|+..... ...+-++..++.++... ...+..+..+.+ +.++ +
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al-~~l~~~~ 284 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAV-QYMTYVN 284 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHH-HHHHhcC
Confidence 578999999999999999987765442 456677764322 23444555555555432 223444443333 3333 3
Q ss_pred CcEEEEEcCCCCC
Q 047700 77 EKILIILDDIWAN 89 (629)
Q Consensus 77 k~~LlVlDdv~~~ 89 (629)
..-+|++|-....
T Consensus 285 ~~D~VLIDTAGr~ 297 (407)
T PRK12726 285 CVDHILIDTVGRN 297 (407)
T ss_pred CCCEEEEECCCCC
Confidence 4567778887653
No 258
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.62 E-value=0.076 Score=53.82 Aligned_cols=86 Identities=20% Similarity=0.296 Sum_probs=46.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCccc-CCCHHHHHHHHHHHHcC--
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSST-ANVEKIQDEIAEQLGLELC-KGTESERARTLFDQLWK-- 76 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~~-- 76 (629)
+|+++|.+|+||||++..+......+ . ..+..++.... ....+-++.-+..++.... ..+.....+.+.. ++.
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~-G-kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~-lk~~~ 319 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGK-K-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY-FKEEA 319 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc-C-CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHH-HHhcc
Confidence 57999999999999999998876533 2 23445655321 1222233333444443321 2234444433332 332
Q ss_pred CcEEEEEcCCCCC
Q 047700 77 EKILIILDDIWAN 89 (629)
Q Consensus 77 k~~LlVlDdv~~~ 89 (629)
+.=++++|-....
T Consensus 320 ~~DvVLIDTaGRs 332 (436)
T PRK11889 320 RVDYILIDTAGKN 332 (436)
T ss_pred CCCEEEEeCcccc
Confidence 3456677777543
No 259
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.023 Score=48.39 Aligned_cols=69 Identities=19% Similarity=0.147 Sum_probs=40.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKI 79 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 79 (629)
|-|.|-+|+||||+|+++......+ |+++|+--....+...-=.. -+...-+++...+.+...+.+..+
T Consensus 10 ILvtGTPG~GKstl~~~lae~~~~~-------~i~isd~vkEn~l~~gyDE~--y~c~i~DEdkv~D~Le~~m~~Gg~ 78 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKTGLE-------YIEISDLVKENNLYEGYDEE--YKCHILDEDKVLDELEPLMIEGGN 78 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHhCCc-------eEehhhHHhhhcchhccccc--ccCccccHHHHHHHHHHHHhcCCc
Confidence 5789999999999999998665543 77776532222222111000 011223455566666666655444
No 260
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.61 E-value=0.094 Score=54.76 Aligned_cols=86 Identities=15% Similarity=0.177 Sum_probs=52.5
Q ss_pred EEEEcCCCCcHHHHH-HHHHHHhhhc-----CCCCeEEEEEeCCCcC-HHHHHHHHHHHhC-Cc-------ccCCCHHH-
Q 047700 2 IGVYGIGGIGKTTLM-HEVLFEAKKE-----KLFDQVVFVLKSSTAN-VEKIQDEIAEQLG-LE-------LCKGTESE- 65 (629)
Q Consensus 2 i~i~G~gG~GKTtLa-~~v~~~~~~~-----~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~-~~-------~~~~~~~~- 65 (629)
++|.|-.|+|||+|| ..|.+...+. ++-+.++++-+.+... +.+ ..+.+++-+ .+ ...+....
T Consensus 192 ~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAdep~~~r 270 (574)
T PTZ00185 192 ELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAEPAGLQ 270 (574)
T ss_pred EEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCCCHHHH
Confidence 589999999999997 7777775321 2346778888888764 344 444444433 11 11222211
Q ss_pred -----HHHHHHHHH--cCCcEEEEEcCCCC
Q 047700 66 -----RARTLFDQL--WKEKILIILDDIWA 88 (629)
Q Consensus 66 -----~~~~l~~~l--~~k~~LlVlDdv~~ 88 (629)
..-.+.+++ +|+.+|+|+||+-+
T Consensus 271 ~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 271 YLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 122333444 38999999999943
No 261
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.59 E-value=0.23 Score=54.77 Aligned_cols=64 Identities=8% Similarity=0.081 Sum_probs=35.9
Q ss_pred CCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEE-Eeecccccccc----ccc--CCCCChHHHHHHHHHH
Q 047700 76 KEKILIILDDIWAN--IDLETVGILFGGAHRGCKIL-LTPRYQNVLVS----EMH--SKNKPLAEWKDALQKL 139 (629)
Q Consensus 76 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~il-vTTR~~~v~~~----~~~--l~~~~~~~w~~~~~~~ 139 (629)
+++-++|+|+++.. ..++.+...+-.......+| +||+...+... +.. +...+..++...+...
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~i 189 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFI 189 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHH
Confidence 66778999999755 45666766664433344544 44444333321 211 4455677766555543
No 262
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.59 E-value=0.02 Score=50.73 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=28.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVL 36 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~ 36 (629)
|++|+|..|+|||||++++....+.+ .+...+.-+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEec
Confidence 78999999999999999999987754 455555444
No 263
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.58 E-value=0.018 Score=50.52 Aligned_cols=34 Identities=26% Similarity=0.209 Sum_probs=27.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVL 36 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~ 36 (629)
||-|.|..|+||||||+++....... -..+..++
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 57799999999999999999998866 45566664
No 264
>PRK06762 hypothetical protein; Provisional
Probab=95.58 E-value=0.0092 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|.|.|+.|+||||+|+.+.+..
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998875
No 265
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.57 E-value=0.026 Score=51.25 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=57.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC--CcCHHHHHHHHHHHhCCc--ccC------CCHHH-HHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS--TANVEKIQDEIAEQLGLE--LCK------GTESE-RART 69 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~--~~~------~~~~~-~~~~ 69 (629)
+++|+|..|+|||||++.+..-... ..+.++++-.. ..+.....+.+.--.... ... .+..+ ..-.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~ 106 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRP---TSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLG 106 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCC---CCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHH
Confidence 4789999999999999999876442 33444432111 011111111110000000 000 11111 1234
Q ss_pred HHHHHcCCcEEEEEcCCCCC---cchhhhhhccCC-CCCCcEEEEeecccccc
Q 047700 70 LFDQLWKEKILIILDDIWAN---IDLETVGILFGG-AHRGCKILLTPRYQNVL 118 (629)
Q Consensus 70 l~~~l~~k~~LlVlDdv~~~---~~~~~l~~~~~~-~~~gs~ilvTTR~~~v~ 118 (629)
+...+-.+.-++++|+.-.. ...+.+...+.. ...|..||++|.+.+.+
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 159 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL 159 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 44555567778899998644 112222222211 12366788888877654
No 266
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57 E-value=0.029 Score=50.03 Aligned_cols=110 Identities=17% Similarity=0.245 Sum_probs=59.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc--CHHHHHHHHHHHhCCcccCCCHHH-HHHHHHHHHcCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA--NVEKIQDEIAEQLGLELCKGTESE-RARTLFDQLWKE 77 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~-~~~~l~~~l~~k 77 (629)
+++|+|..|.|||||++.+...... ..+.++++..... ...... ..++--.. .+..+ ..-.+...+-..
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~----~~i~~~~q-lS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKLPLEELR----RRIGYVPQ-LSGGQRQRVALARALLLN 98 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccCCHHHHH----hceEEEee-CCHHHHHHHHHHHHHhcC
Confidence 4789999999999999999876542 4666665432111 111111 11111000 11111 223345555567
Q ss_pred cEEEEEcCCCCCc---chhhhhhccCC-CCCCcEEEEeecccccc
Q 047700 78 KILIILDDIWANI---DLETVGILFGG-AHRGCKILLTPRYQNVL 118 (629)
Q Consensus 78 ~~LlVlDdv~~~~---~~~~l~~~~~~-~~~gs~ilvTTR~~~v~ 118 (629)
.-++++|+.-..- ....+...+.. ...+..++++|.+...+
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 143 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELA 143 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 8889999986441 22223222211 11256788888877664
No 267
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.56 E-value=0.07 Score=55.49 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=47.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCcc----cCCCHHHHHHHHHHHHc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS-TANVEKIQDEIAEQLGLEL----CKGTESERARTLFDQLW 75 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~l~ 75 (629)
|+.++|..|+||||.|..++.....+..+ .+.-|++.. .....+-++.....++... ...++.+......+...
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~ 179 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAK 179 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999988775432222 344454432 1112333344455554331 12233344333344444
Q ss_pred CCcE-EEEEcCCCC
Q 047700 76 KEKI-LIILDDIWA 88 (629)
Q Consensus 76 ~k~~-LlVlDdv~~ 88 (629)
.+.| ++|+|-...
T Consensus 180 ~~~~DvVIIDTaGr 193 (428)
T TIGR00959 180 ENGFDVVIVDTAGR 193 (428)
T ss_pred hcCCCEEEEeCCCc
Confidence 4444 677777653
No 268
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.56 E-value=0.066 Score=50.56 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|.|+|+.|+||||+|+.+.....
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987643
No 269
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.55 E-value=0.088 Score=54.66 Aligned_cols=85 Identities=22% Similarity=0.376 Sum_probs=55.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHH------HH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESE------RA 67 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------~~ 67 (629)
++|.|.+|+|||||+.++......+. =..++++-+.+.- .+.++.+++...-..+ ..++.... .+
T Consensus 146 ~~If~~~G~GKt~L~~~~~~~~~~~~-~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a 224 (461)
T TIGR01039 146 IGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTG 224 (461)
T ss_pred EEeecCCCCChHHHHHHHHHHHHhcC-CCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHH
Confidence 68999999999999999988766432 2467788777754 4677777775432111 12222222 12
Q ss_pred HHHHHHH---cCCcEEEEEcCCC
Q 047700 68 RTLFDQL---WKEKILIILDDIW 87 (629)
Q Consensus 68 ~~l~~~l---~~k~~LlVlDdv~ 87 (629)
-.+.+++ +|+.+|+++||+-
T Consensus 225 ~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 225 LTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHhcCCeeEEEecchh
Confidence 3444554 4799999999994
No 270
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.55 E-value=0.036 Score=53.71 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+|.++|.+|+||||+|+.+......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999988754
No 271
>PRK06696 uridine kinase; Validated
Probab=95.53 E-value=0.0089 Score=56.86 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=23.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
+|+|.|.+|+||||+|+.+.......
T Consensus 24 iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 24 RVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 68999999999999999999887543
No 272
>PRK05922 type III secretion system ATPase; Validated
Probab=95.52 E-value=0.07 Score=55.22 Aligned_cols=82 Identities=23% Similarity=0.328 Sum_probs=48.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCc-------ccCCCHHH------HH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSST-ANVEKIQDEIAEQLGLE-------LCKGTESE------RA 67 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~------~~ 67 (629)
++|+|..|+|||||++.+..... -+..+.+-+.+. ..+.+++.........+ ..+..... .+
T Consensus 160 igI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a 235 (434)
T PRK05922 160 IGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAA 235 (434)
T ss_pred EEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHH
Confidence 78999999999999999987643 333444444443 33445555444333221 11111212 12
Q ss_pred HHHHHHHc--CCcEEEEEcCCC
Q 047700 68 RTLFDQLW--KEKILIILDDIW 87 (629)
Q Consensus 68 ~~l~~~l~--~k~~LlVlDdv~ 87 (629)
-.+.++++ |+++|+++||+-
T Consensus 236 ~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 236 MTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHcCCCEEEeccchh
Confidence 34455553 999999999993
No 273
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.51 E-value=0.042 Score=49.79 Aligned_cols=111 Identities=12% Similarity=0.207 Sum_probs=57.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC--CcCHHHHHHHHHHHhCC--cc----cC------CCHHH-
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS--TANVEKIQDEIAEQLGL--EL----CK------GTESE- 65 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~--~~----~~------~~~~~- 65 (629)
+++|+|..|+|||||++.++.-... ..+.+++.-.. ..+..... ..++- +. .. .+..+
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~----~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDP---TSGEILIDGVDLRDLDLESLR----KNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEhhhcCHHHHH----hhEEEEcCCchhccchHHHHhhCHHHH
Confidence 4789999999999999999887543 34444432110 01111111 11110 00 00 11111
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCCc---chhhhhhccCCCCCCcEEEEeecccccc
Q 047700 66 RARTLFDQLWKEKILIILDDIWANI---DLETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 66 ~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
..-.+...+-.+.-+++||+--..- ..+.+...+.....+..||++|.+.+.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 1223455555777899999986441 1222322222112356788888887654
No 274
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.48 E-value=0.039 Score=47.99 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=44.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCC-cccCCCHHHHHHHHHHHHcCCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGL-ELCKGTESERARTLFDQLWKEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~l~~~l~~k~~L 80 (629)
|-++|..|+|||+||+.++..... ...-+.++...+..++....--.-+. .... ......+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~---~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIGSYDPSNGQFEFKD---GPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE----CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccceeeeeeccccccccc---ccccccc-----cceeE
Confidence 578999999999999999988732 23346778888888776432211000 0000 0000001 17899
Q ss_pred EEEcCCCCC
Q 047700 81 IILDDIWAN 89 (629)
Q Consensus 81 lVlDdv~~~ 89 (629)
+|||++...
T Consensus 69 l~lDEin~a 77 (139)
T PF07728_consen 69 LVLDEINRA 77 (139)
T ss_dssp EEESSCGG-
T ss_pred EEECCcccC
Confidence 999999744
No 275
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.48 E-value=0.064 Score=56.01 Aligned_cols=86 Identities=19% Similarity=0.174 Sum_probs=46.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCccc-CCCHHHHHHHHHHHHcCCc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGLELC-KGTESERARTLFDQLWKEK 78 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~~k~ 78 (629)
++.++|.+|+||||++.++.........-..+..|+....- ...+-++.-.+.++.... ..+..+....+. .+. ..
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~-~~~-~~ 300 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALE-QLR-DC 300 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHH-HhC-CC
Confidence 57899999999999999887776511123456677764321 112223333333433221 122333333333 233 35
Q ss_pred EEEEEcCCCC
Q 047700 79 ILIILDDIWA 88 (629)
Q Consensus 79 ~LlVlDdv~~ 88 (629)
-+|++|....
T Consensus 301 DlVlIDt~G~ 310 (424)
T PRK05703 301 DVILIDTAGR 310 (424)
T ss_pred CEEEEeCCCC
Confidence 6788887643
No 276
>PRK03839 putative kinase; Provisional
Probab=95.47 E-value=0.011 Score=54.25 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
.|.|+|+.|+||||+|+.+++....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3789999999999999999998753
No 277
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.47 E-value=0.11 Score=53.30 Aligned_cols=86 Identities=14% Similarity=0.146 Sum_probs=50.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcC--CCCeEEEEEeCCCcC--HHHHHHHHHHHhCCcccC-CCHHHHHHHHHHHHc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEK--LFDQVVFVLKSSTAN--VEKIQDEIAEQLGLELCK-GTESERARTLFDQLW 75 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~ 75 (629)
+|.++|..|+||||.+..+........ +=..+..|+... |. ..+-++..++.++..... .+..+....+.+ +
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt-~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~-~- 252 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN-YRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ-S- 252 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC-ccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-h-
Confidence 578999999999999999987755321 123455666543 33 233355556656554222 233333333332 3
Q ss_pred CCcEEEEEcCCCCC
Q 047700 76 KEKILIILDDIWAN 89 (629)
Q Consensus 76 ~k~~LlVlDdv~~~ 89 (629)
.+.-++++|.....
T Consensus 253 ~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 KDFDLVLVDTIGKS 266 (388)
T ss_pred CCCCEEEEcCCCCC
Confidence 45668888988654
No 278
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=95.47 E-value=0.082 Score=55.42 Aligned_cols=83 Identities=17% Similarity=0.242 Sum_probs=53.8
Q ss_pred EEEEcCCCCcHHHHH-HHHHHHhhhcCCCCe-EEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHHH-----
Q 047700 2 IGVYGIGGIGKTTLM-HEVLFEAKKEKLFDQ-VVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESER----- 66 (629)
Q Consensus 2 i~i~G~gG~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 66 (629)
++|.|-.|+|||||| .+|.+... -+. .+++-+.+.. .+.++.+.+...=..+ ..++.....
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~q~~----~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~ 240 (497)
T TIGR03324 165 ELILGDRQTGKTAIAIDTILNQKG----RNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPY 240 (497)
T ss_pred EEeecCCCCCHHHHHHHHHHHhcC----CCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHH
Confidence 689999999999996 67877643 455 6788887764 5677777766542221 122222111
Q ss_pred -HHHHHHHH--cCCcEEEEEcCCCC
Q 047700 67 -ARTLFDQL--WKEKILIILDDIWA 88 (629)
Q Consensus 67 -~~~l~~~l--~~k~~LlVlDdv~~ 88 (629)
...+.+++ +|+.+|+|+||+-.
T Consensus 241 ~a~aiAEyfrd~G~~VLlv~DdlTr 265 (497)
T TIGR03324 241 AATSIGEHFMEQGRDVLIVYDDLTQ 265 (497)
T ss_pred HHHHHHHHHHhCCCCEEEEEcChhH
Confidence 22344444 49999999999943
No 279
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.47 E-value=0.079 Score=53.38 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=39.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh----cCCCCeEEEEEeCCCcCHHHHHHHHHHHhCC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK----EKLFDQVVFVLKSSTANVEKIQDEIAEQLGL 56 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 56 (629)
.=|+|..|+|||+||..++-.... .+.-..++||+....|+.+.+.+ ++++++.
T Consensus 129 tEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 129 TEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred EEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 458999999999999888644332 12235689999999999888765 5666654
No 280
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.46 E-value=0.056 Score=51.50 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=66.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-----CcCHHHHHHHHHHHhCCcc------cCC-CHHHHH-
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS-----TANVEKIQDEIAEQLGLEL------CKG-TESERA- 67 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~------~~~-~~~~~~- 67 (629)
++|+||-.|.||||+|+.+..=... -.+.+++.-.. .....+-..+++..++... +.. +-.+.+
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 4899999999999999999766553 23344432111 1223344556667666431 111 112222
Q ss_pred HHHHHHHcCCcEEEEEcCCCCC------cchhhhhhccCCCCCCcEEEEeeccccccc
Q 047700 68 RTLFDQLWKEKILIILDDIWAN------IDLETVGILFGGAHRGCKILLTPRYQNVLV 119 (629)
Q Consensus 68 ~~l~~~l~~k~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~ 119 (629)
..|...|.-+.-++|.|.--.. .+--.+...+. ...|-..+.-|.+-.++.
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVR 174 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhh
Confidence 3466667789999999986543 12222333332 233667788888877764
No 281
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.45 E-value=0.045 Score=56.56 Aligned_cols=84 Identities=15% Similarity=0.283 Sum_probs=49.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCc-------ccCCCHHH------HH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLE-------LCKGTESE------RA 67 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-------~~~~~~~~------~~ 67 (629)
.++|+|..|+|||||++.+...... ..+++...--+...+.++.++.+..-+.+ ..++.... .+
T Consensus 142 ~i~I~G~sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a 218 (418)
T TIGR03498 142 RLGIFAGSGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTA 218 (418)
T ss_pred EEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHH
Confidence 3789999999999999998876542 22333322233444666666555442211 11222211 12
Q ss_pred HHHHHHH--cCCcEEEEEcCCC
Q 047700 68 RTLFDQL--WKEKILIILDDIW 87 (629)
Q Consensus 68 ~~l~~~l--~~k~~LlVlDdv~ 87 (629)
-.+.+++ +|+.+|+++||+-
T Consensus 219 ~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 219 TAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHcCCCEEEeccchh
Confidence 3344555 3899999999994
No 282
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.44 E-value=0.0057 Score=33.99 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=13.2
Q ss_pred ccceeeccCCCCccCchhhhc
Q 047700 346 KLENLSLVDSDIEWLPNEIGE 366 (629)
Q Consensus 346 ~L~~L~l~~~~l~~lp~~i~~ 366 (629)
+|++|++++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665543
No 283
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.44 E-value=0.076 Score=53.38 Aligned_cols=54 Identities=28% Similarity=0.405 Sum_probs=39.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc----CCCCeEEEEEeCCCcCHHHHHHHHHHHhC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE----KLFDQVVFVLKSSTANVEKIQDEIAEQLG 55 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 55 (629)
|+-|+|..|+||||+|..++-..... +.=..++||+....|+.+.+.+ +++.++
T Consensus 97 i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~g 154 (310)
T TIGR02236 97 ITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARG 154 (310)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 45699999999999999987775421 1112789999988898877654 444443
No 284
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.43 E-value=0.034 Score=63.62 Aligned_cols=107 Identities=15% Similarity=0.134 Sum_probs=55.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCc-EE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEK-IL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~-~L 80 (629)
+-++|+.|+|||+||+.+.+..-.. -...+-++.++-.+... +.+-++...+-...++ ...+.+.++.++ -+
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~----~~~l~g~~~gyvg~~~-~~~l~~~~~~~p~~V 614 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHT----VSKLIGSPPGYVGYNE-GGQLTEAVRKKPYTV 614 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhcccccc----HHHhcCCCCcccCcCc-cchHHHHHHhCCCeE
Confidence 4589999999999999998764321 12334455544222111 1112222111000001 123455566555 57
Q ss_pred EEEcCCCCC--cchhhhhhccCCC-----------CCCcEEEEeeccc
Q 047700 81 IILDDIWAN--IDLETVGILFGGA-----------HRGCKILLTPRYQ 115 (629)
Q Consensus 81 lVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~ilvTTR~~ 115 (629)
+++|+++.. +.++.+...+..+ ...+.||+||.-.
T Consensus 615 vllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g 662 (821)
T CHL00095 615 VLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLG 662 (821)
T ss_pred EEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcc
Confidence 889999865 3455554444321 2356667776643
No 285
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.42 E-value=0.012 Score=51.61 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
||.++|+.|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999976643
No 286
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.42 E-value=0.075 Score=52.99 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=50.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCc-------ccCCCHHH------H
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS-TANVEKIQDEIAEQLGLE-------LCKGTESE------R 66 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~------~ 66 (629)
.++|+|..|+|||||++.+...... +..+..-+.+ .-++.++.......-+.. ..++.... .
T Consensus 71 ri~I~G~sG~GKTtLl~~Ia~~~~~----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~ 146 (326)
T cd01136 71 RLGIFAGSGVGKSTLLGMIARGTTA----DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYT 146 (326)
T ss_pred EEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999876543 3334444443 345666666555543211 11222221 1
Q ss_pred HHHHHHHH--cCCcEEEEEcCCC
Q 047700 67 ARTLFDQL--WKEKILIILDDIW 87 (629)
Q Consensus 67 ~~~l~~~l--~~k~~LlVlDdv~ 87 (629)
.-.+.+++ +||.+|+++||+-
T Consensus 147 a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 147 ATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHcCCCeEEEeccch
Confidence 22344444 3999999999983
No 287
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.41 E-value=0.022 Score=53.63 Aligned_cols=112 Identities=10% Similarity=0.086 Sum_probs=54.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh--hcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcc----cCCCHHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK--KEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLEL----CKGTESERARTLFDQL 74 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~l 74 (629)
++.|+|..|.||||+.+.+.-... ..+.|-..-...++ ....+..+++... ....-....+++...+
T Consensus 31 ~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~-------~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIG-------LVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEe-------eeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 368999999999999999875432 11222111011100 1111122222110 0001111122222222
Q ss_pred --cCCcEEEEEcCCCCCcc---hhh----hhhccCCC-CCCcEEEEeeccccccc
Q 047700 75 --WKEKILIILDDIWANID---LET----VGILFGGA-HRGCKILLTPRYQNVLV 119 (629)
Q Consensus 75 --~~k~~LlVlDdv~~~~~---~~~----l~~~~~~~-~~gs~ilvTTR~~~v~~ 119 (629)
..++-|++||+.....+ ... +...+... ..+..+|+||.+.+.+.
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~ 158 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFN 158 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHH
Confidence 37789999999976532 111 22223222 23458999999888763
No 288
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.41 E-value=0.083 Score=55.12 Aligned_cols=86 Identities=23% Similarity=0.269 Sum_probs=51.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCcccC----CCHHHHHHHHHHHHc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS-TANVEKIQDEIAEQLGLELCK----GTESERARTLFDQLW 75 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~~l~ 75 (629)
+|.++|..|+||||.|..++.....++ + .+.-|++.. .....+.++.++.+++..... .+.........+.++
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~ 174 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK 174 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh
Confidence 578999999999999999998776542 3 344454432 112345566667776654221 122233333334444
Q ss_pred CCcEEEEEcCCCCC
Q 047700 76 KEKILIILDDIWAN 89 (629)
Q Consensus 76 ~k~~LlVlDdv~~~ 89 (629)
+. -++|+|.-...
T Consensus 175 ~~-DvVIIDTAGr~ 187 (437)
T PRK00771 175 KA-DVIIVDTAGRH 187 (437)
T ss_pred cC-CEEEEECCCcc
Confidence 44 67889988644
No 289
>PRK06547 hypothetical protein; Provisional
Probab=95.40 E-value=0.012 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|.|..|+||||+|+.+.+...
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988743
No 290
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.38 E-value=0.034 Score=57.49 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+.++|..|+|||++|+++++...
T Consensus 182 vLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 182 VLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999998755
No 291
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.36 E-value=0.078 Score=58.67 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=47.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcC--HHHHHHHHHHHhCCccc-CCCHHHHHHHHHHHHcCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTAN--VEKIQDEIAEQLGLELC-KGTESERARTLFDQLWKE 77 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~~k 77 (629)
|++++|..|+||||.+.++.........-..+..|+.. .|. ..+-++...+.++.... ..+..+..+.+ +.++++
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al-~~~~~~ 264 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFAL-AALGDK 264 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHH-HHhcCC
Confidence 68999999999999999998776432222345556543 232 34445555555554322 12333332222 334444
Q ss_pred cEEEEEcCCC
Q 047700 78 KILIILDDIW 87 (629)
Q Consensus 78 ~~LlVlDdv~ 87 (629)
-+|++|-..
T Consensus 265 -D~VLIDTAG 273 (767)
T PRK14723 265 -HLVLIDTVG 273 (767)
T ss_pred -CEEEEeCCC
Confidence 356667665
No 292
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.36 E-value=0.013 Score=53.41 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=22.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
||+|.|..|+||||||+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6999999999999999999988653
No 293
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.35 E-value=0.057 Score=56.13 Aligned_cols=84 Identities=18% Similarity=0.319 Sum_probs=50.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCc-------ccCCCHHH------HH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLE-------LCKGTESE------RA 67 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-------~~~~~~~~------~~ 67 (629)
.++|.|..|+|||||++.+....... .++++..--+...+.++.+.+...-+.. ..++.... ..
T Consensus 165 ~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a 241 (441)
T PRK09099 165 RMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVA 241 (441)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHH
Confidence 37899999999999999998765432 2344443334445666666665442211 11121111 12
Q ss_pred HHHHHHHc--CCcEEEEEcCCC
Q 047700 68 RTLFDQLW--KEKILIILDDIW 87 (629)
Q Consensus 68 ~~l~~~l~--~k~~LlVlDdv~ 87 (629)
..+.++++ |+.+|+++||+-
T Consensus 242 ~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 242 TAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHcCCCEEEeccchh
Confidence 33444443 899999999993
No 294
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.34 E-value=0.1 Score=53.94 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=56.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh------c---C--CCCeEEEEEeCCCcCHHHHHHHHHHHhC-Cc-------ccCCC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK------E---K--LFDQVVFVLKSSTANVEKIQDEIAEQLG-LE-------LCKGT 62 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~------~---~--~F~~~~wv~vs~~~~~~~~~~~i~~~l~-~~-------~~~~~ 62 (629)
++|.|-+|+|||||+.+|.+..+. + + .=..++++-+.+.....+...+.+..-+ .+ ..++.
T Consensus 144 igIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p 223 (466)
T TIGR01040 144 IPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDP 223 (466)
T ss_pred eeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCC
Confidence 689999999999999999988752 1 0 0115667778888777777777766654 21 12222
Q ss_pred HHH------HHHHHHHHHc---CCcEEEEEcCCC
Q 047700 63 ESE------RARTLFDQLW---KEKILIILDDIW 87 (629)
Q Consensus 63 ~~~------~~~~l~~~l~---~k~~LlVlDdv~ 87 (629)
... .+..+.++++ |+++|+++||+-
T Consensus 224 ~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 224 TIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 222 1233455554 799999999994
No 295
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.33 E-value=0.52 Score=50.44 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccccc-----ccccc--CCCCChHHHHHHHHHH
Q 047700 76 KEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQNVL-----VSEMH--SKNKPLAEWKDALQKL 139 (629)
Q Consensus 76 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v~-----~~~~~--l~~~~~~~w~~~~~~~ 139 (629)
+++-++|+|+++.. +..+.+...+-.....+++|++|.+..-. .++.. +...+.+++...+...
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~I 188 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTI 188 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHH
Confidence 56678899999765 34556666664445567777777654322 11211 4445666665555444
No 296
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.33 E-value=0.073 Score=55.30 Aligned_cols=83 Identities=17% Similarity=0.287 Sum_probs=50.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHH------H
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESE------R 66 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------~ 66 (629)
.++|+|..|+|||||++.+..... .+.++...+.... ++.++.+.+...-+.. ..+..... .
T Consensus 170 rigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~ 245 (451)
T PRK05688 170 RLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMY 245 (451)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHH
Confidence 378999999999999999876432 3454454454433 4566665555443221 11111111 1
Q ss_pred HHHHHHHH--cCCcEEEEEcCCC
Q 047700 67 ARTLFDQL--WKEKILIILDDIW 87 (629)
Q Consensus 67 ~~~l~~~l--~~k~~LlVlDdv~ 87 (629)
+..+.++. +|+++|+++||+-
T Consensus 246 a~aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 246 CTRIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHCCCCEEEEecchh
Confidence 22344444 4999999999994
No 297
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.31 E-value=0.056 Score=55.97 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=50.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCc-------ccCCCHHH------H
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSST-ANVEKIQDEIAEQLGLE-------LCKGTESE------R 66 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~------~ 66 (629)
.++|+|..|+|||||++.+.+... .+..+++.+.+. ..+.++.+.....-..+ ...+...+ .
T Consensus 157 rigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~ 232 (433)
T PRK07594 157 RVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV 232 (433)
T ss_pred EEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHH
Confidence 378999999999999999987654 455566666554 44556665543321110 11111111 1
Q ss_pred HHHHHHHHc--CCcEEEEEcCCC
Q 047700 67 ARTLFDQLW--KEKILIILDDIW 87 (629)
Q Consensus 67 ~~~l~~~l~--~k~~LlVlDdv~ 87 (629)
+..+.++++ |+++|+++||+-
T Consensus 233 a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 233 ATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHCCCcEEEEEeCHH
Confidence 233444443 999999999994
No 298
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.31 E-value=0.15 Score=50.66 Aligned_cols=82 Identities=24% Similarity=0.290 Sum_probs=50.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcc------cCCCHHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLEL------CKGTESERARTLFDQL 74 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~l 74 (629)
|+-|+|..|+||||||-.+....... -..++||+....+|.... .+++.+. ..+..++....+.+.+
T Consensus 55 ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~~a-----~~lGvdl~rllv~~P~~~E~al~~~e~li 127 (322)
T PF00154_consen 55 IVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPEYA-----ESLGVDLDRLLVVQPDTGEQALWIAEQLI 127 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HHHH-----HHTT--GGGEEEEE-SSHHHHHHHHHHHH
T ss_pred eEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhhHH-----HhcCccccceEEecCCcHHHHHHHHHHHh
Confidence 46799999999999998888776543 466789999888877544 3344321 1223344445555555
Q ss_pred c-CCcEEEEEcCCCCC
Q 047700 75 W-KEKILIILDDIWAN 89 (629)
Q Consensus 75 ~-~k~~LlVlDdv~~~ 89 (629)
+ +..-++|+|-|...
T Consensus 128 rsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 128 RSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HTTSESEEEEE-CTT-
T ss_pred hcccccEEEEecCccc
Confidence 5 55678899998654
No 299
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.31 E-value=0.071 Score=53.07 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=52.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHh----CC----------cccCCCHHH-
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQL----GL----------ELCKGTESE- 65 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l----~~----------~~~~~~~~~- 65 (629)
++|.|..|+|||+|++.+.+... -+.++++-+.+.- .+.++.+++-+.. +. ...++....
T Consensus 160 ~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~~~R 235 (369)
T cd01134 160 AAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAR 235 (369)
T ss_pred EEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCHHHH
Confidence 68999999999999999988643 4678888887754 4677776653211 11 011222111
Q ss_pred -----HHHHHHHHHc--CCcEEEEEcCC
Q 047700 66 -----RARTLFDQLW--KEKILIILDDI 86 (629)
Q Consensus 66 -----~~~~l~~~l~--~k~~LlVlDdv 86 (629)
..-.+.++++ |+.+|+++|++
T Consensus 236 ~~s~yta~tiAEYfrd~G~dVll~~Ds~ 263 (369)
T cd01134 236 EASIYTGITIAEYFRDMGYNVALMADST 263 (369)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1223444443 89999999998
No 300
>PRK10867 signal recognition particle protein; Provisional
Probab=95.29 E-value=0.1 Score=54.37 Aligned_cols=85 Identities=21% Similarity=0.262 Sum_probs=44.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCH--HHHHHHHHHHhCCcc----cCCCHHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANV--EKIQDEIAEQLGLEL----CKGTESERARTLFDQL 74 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~l 74 (629)
||.++|..|+||||.|..+......+.. ..+..|+... |.. .+-++..+...+... ...+..+......+..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G-~kV~lV~~D~-~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a 179 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKK-KKVLLVAADV-YRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEA 179 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcC-CcEEEEEccc-cchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHH
Confidence 5789999999999998888776654311 2334444422 222 223334455554321 1123334333333333
Q ss_pred cCCcE-EEEEcCCC
Q 047700 75 WKEKI-LIILDDIW 87 (629)
Q Consensus 75 ~~k~~-LlVlDdv~ 87 (629)
+.+.| ++++|-..
T Consensus 180 ~~~~~DvVIIDTaG 193 (433)
T PRK10867 180 KENGYDVVIVDTAG 193 (433)
T ss_pred HhcCCCEEEEeCCC
Confidence 33334 66666665
No 301
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.26 E-value=0.015 Score=48.01 Aligned_cols=24 Identities=46% Similarity=0.627 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
|-|+|.+|+|||++|+.+..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999888654
No 302
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.26 E-value=0.071 Score=56.33 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=48.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEE-EEEeCCCc-CHHHHHHHHHHHhCCcccCCCH------HHHHHHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVV-FVLKSSTA-NVEKIQDEIAEQLGLELCKGTE------SERARTLFDQ 73 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~------~~~~~~l~~~ 73 (629)
..|+|..|+|||||++.|.+..... +=++.+ .+-|.+.. .+.++.+.+=..+-........ ......+.++
T Consensus 419 ~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~ 497 (672)
T PRK12678 419 GLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKR 497 (672)
T ss_pred eEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999876542 234443 34455543 3444443331111001111111 1223445555
Q ss_pred H--cCCcEEEEEcCCC
Q 047700 74 L--WKEKILIILDDIW 87 (629)
Q Consensus 74 l--~~k~~LlVlDdv~ 87 (629)
+ .|+.+||++|++-
T Consensus 498 fre~G~dVlillDSlT 513 (672)
T PRK12678 498 LVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHcCCCEEEEEeCch
Confidence 5 3999999999993
No 303
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.25 E-value=0.074 Score=56.42 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
|-++|..|+|||.+|+++.+....
T Consensus 262 ILL~GPpGTGKTllAkaiA~e~~~ 285 (489)
T CHL00195 262 LLLVGIQGTGKSLTAKAIANDWQL 285 (489)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 568999999999999999988653
No 304
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.25 E-value=0.094 Score=52.52 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=38.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc----CCCCeEEEEEeCCCcCHHHHHHHHHHHhC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE----KLFDQVVFVLKSSTANVEKIQDEIAEQLG 55 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 55 (629)
|+.|+|..|+||||||..++-..... +.-..++||+....|+.+.+. .++++++
T Consensus 98 i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~-~ia~~~~ 155 (316)
T TIGR02239 98 ITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLL-AIAERYG 155 (316)
T ss_pred EEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 46799999999999999887643321 122467999998888877643 3555543
No 305
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.23 E-value=0.11 Score=49.61 Aligned_cols=46 Identities=15% Similarity=0.227 Sum_probs=29.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEI 50 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 50 (629)
++.|.|..|+||||+|.++......++ ..+++++... +..++.+.+
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCC--CHHHHHHHH
Confidence 468999999999999866655543332 4456666433 345555554
No 306
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.23 E-value=0.038 Score=53.84 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=20.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
.|.|.|.+|+||||+|+.+......
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 3789999999999999999988765
No 307
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.22 E-value=0.12 Score=52.48 Aligned_cols=26 Identities=35% Similarity=0.623 Sum_probs=23.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
+|||.|.=|+|||++.+++.+..+.+
T Consensus 22 ~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 22 VIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 58999999999999999999998765
No 308
>PRK07667 uridine kinase; Provisional
Probab=95.20 E-value=0.017 Score=53.51 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=22.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
||||-|..|+||||+|+.+......
T Consensus 19 iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988754
No 309
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.19 E-value=0.017 Score=51.14 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
++.|+|..|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 57899999999999999998773
No 310
>PRK00625 shikimate kinase; Provisional
Probab=95.18 E-value=0.017 Score=52.26 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|.++||.|+||||+|+.+.+...
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988765
No 311
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.18 E-value=0.055 Score=61.78 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=20.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
++.++|+.|+|||.||+.+....-
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999977753
No 312
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.18 E-value=0.032 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+++|+|..|.|||||++.+.-..
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 47899999999999999997654
No 313
>PRK06217 hypothetical protein; Validated
Probab=95.15 E-value=0.017 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|.|.|..|+||||+|+++.....
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998864
No 314
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.15 E-value=0.12 Score=56.59 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=63.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcc-----cCCCHHHHHHHHHHHHc--
Q 047700 3 GVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLEL-----CKGTESERARTLFDQLW-- 75 (629)
Q Consensus 3 ~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~l~~~l~-- 75 (629)
-++|..|+||||+|+.+.+..--..... .. ...-...+..+.|......+. ......+.++.+.+.+.
T Consensus 42 Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~----~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~ 116 (620)
T PRK14948 42 LFTGPRGTGKTSSARILAKSLNCLNSDK-PT----PEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFA 116 (620)
T ss_pred EEECCCCCChHHHHHHHHHHhcCCCcCC-CC----CCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhC
Confidence 5899999999999999988864321110 00 000111222222322221110 00011112222222222
Q ss_pred ---CCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccc-ccc----cccc--CCCCChHHHHHHHHHH
Q 047700 76 ---KEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQN-VLV----SEMH--SKNKPLAEWKDALQKL 139 (629)
Q Consensus 76 ---~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~----~~~~--l~~~~~~~w~~~~~~~ 139 (629)
+++-++|+|+++.. ...+.|...+........+|++|.+.. +.. ++.. ++..+..++...+...
T Consensus 117 p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~i 192 (620)
T PRK14948 117 PVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEI 192 (620)
T ss_pred hhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHH
Confidence 55668899999865 346667666654334455555554332 222 1211 3444666665555544
No 315
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.14 E-value=0.11 Score=52.32 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=39.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh---cC-CCCeEEEEEeCCCcCHHHHHHHHHHHhCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK---EK-LFDQVVFVLKSSTANVEKIQDEIAEQLGL 56 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 56 (629)
++-|+|..|+|||++|..++-.... .+ .-..++||+....|..+.+. +|++.++.
T Consensus 125 i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 125 ITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred EEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 3559999999999999888755332 11 12368999999999988775 45666543
No 316
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=95.11 E-value=0.11 Score=54.44 Aligned_cols=85 Identities=25% Similarity=0.278 Sum_probs=55.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcC---CCCeEEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHH-----
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEK---LFDQVVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESE----- 65 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~---~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 65 (629)
++|.|-.|+|||||+.++.++...++ .+ .++++-+.+.. .+.++.+++...-..+ ..++....
T Consensus 146 ~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 224 (460)
T PRK04196 146 LPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTP 224 (460)
T ss_pred EEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHH
Confidence 68999999999999999998876431 11 56677777755 4677777776542211 12222211
Q ss_pred -HHHHHHHHHc---CCcEEEEEcCCC
Q 047700 66 -RARTLFDQLW---KEKILIILDDIW 87 (629)
Q Consensus 66 -~~~~l~~~l~---~k~~LlVlDdv~ 87 (629)
....+.++.+ |+++|+++||+-
T Consensus 225 ~~a~tiAEyfr~d~G~~VLli~DslT 250 (460)
T PRK04196 225 RMALTAAEYLAFEKGMHVLVILTDMT 250 (460)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEcChH
Confidence 1234555554 699999999993
No 317
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.11 E-value=0.038 Score=59.43 Aligned_cols=24 Identities=38% Similarity=0.320 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+-++|+.|+|||++|+++++....
T Consensus 91 iLL~GppGtGKT~la~alA~~~~~ 114 (495)
T TIGR01241 91 VLLVGPPGTGKTLLAKAVAGEAGV 114 (495)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 468999999999999999987543
No 318
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.10 E-value=0.019 Score=50.45 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
||.|+|..|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988754
No 319
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.10 E-value=0.024 Score=61.74 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
++.|+|..|+||||+++.++....
T Consensus 112 illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999998754
No 320
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.10 E-value=0.074 Score=54.98 Aligned_cols=83 Identities=20% Similarity=0.336 Sum_probs=50.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHH------H
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESE------R 66 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------~ 66 (629)
.++|+|..|+|||||++.+.+... -+..+.+.+.+.. .+.++.+++...-..+ ..++.... .
T Consensus 139 ~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~ 214 (411)
T TIGR03496 139 RMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFY 214 (411)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHH
Confidence 378999999999999999887554 2444555665543 4566655554332111 12222222 1
Q ss_pred HHHHHHHH--cCCcEEEEEcCCC
Q 047700 67 ARTLFDQL--WKEKILIILDDIW 87 (629)
Q Consensus 67 ~~~l~~~l--~~k~~LlVlDdv~ 87 (629)
+-.+.+++ +|+++|+++||+-
T Consensus 215 a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 215 ATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHCCCCEEEEEeChH
Confidence 22344444 4999999999993
No 321
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.10 E-value=0.16 Score=51.14 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+-++|..|+||||+|+.+....
T Consensus 25 ~Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 25 YLLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred eeeECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999988775
No 322
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.09 E-value=0.16 Score=48.78 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=31.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDE 49 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 49 (629)
++.|.|.+|+|||++|..+......+ -+.++||+..+ +..++.+.
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHH
Confidence 46799999999999997765543322 56788887755 44455444
No 323
>PRK04040 adenylate kinase; Provisional
Probab=95.09 E-value=0.016 Score=53.23 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|+|+.|+||||+++.+.+...
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999988763
No 324
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.09 E-value=0.089 Score=53.96 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=20.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|+.++|.+|+||||+|.++.....
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~ 248 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYF 248 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999987653
No 325
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.08 E-value=0.066 Score=55.18 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
+++|+|+.|+||||||+.+.--
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred eEEEECCCCccHHHHHHHHHcc
Confidence 4799999999999999998643
No 326
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.07 E-value=0.082 Score=46.69 Aligned_cols=112 Identities=24% Similarity=0.214 Sum_probs=64.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe---CCCcCHHHHHHHHHHHh-----CCc--ccCCCHHH------
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLK---SSTANVEKIQDEIAEQL-----GLE--LCKGTESE------ 65 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~~~~~~~~~~i~~~l-----~~~--~~~~~~~~------ 65 (629)
|-|++-.|.||||+|..+.-+..-.+ + .+.+|-. ........+++.+ ..+ +.. ....+..+
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g-~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a~ 81 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHG-Y-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAAA 81 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHHH
Confidence 56888899999999999988876442 2 3334332 2233444444333 111 110 00011111
Q ss_pred -HHHHHHHHHc-CCcEEEEEcCCCCC-----cchhhhhhccCCCCCCcEEEEeecccc
Q 047700 66 -RARTLFDQLW-KEKILIILDDIWAN-----IDLETVGILFGGAHRGCKILLTPRYQN 116 (629)
Q Consensus 66 -~~~~l~~~l~-~k~~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~ilvTTR~~~ 116 (629)
..+..++.+. ++-=|||||++-.. -..+.+...+.....+.-||+|.|+..
T Consensus 82 ~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 82 EGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2233444444 56679999998544 334556666666666789999999865
No 327
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.049 Score=57.20 Aligned_cols=68 Identities=29% Similarity=0.376 Sum_probs=44.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHH-cCCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQL-WKEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~k~~L 80 (629)
|-++|+.|.|||.||+++.+...+- | +.++-+ +|.+.+ .++++ +.++++++.- ....++
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~vP--f-----~~isAp--------eivSGv----SGESE-kkiRelF~~A~~~aPci 285 (802)
T KOG0733|consen 226 VLLHGPPGCGKTSLANAIAGELGVP--F-----LSISAP--------EIVSGV----SGESE-KKIRELFDQAKSNAPCI 285 (802)
T ss_pred eeeeCCCCccHHHHHHHHhhhcCCc--e-----Eeecch--------hhhccc----CcccH-HHHHHHHHHHhccCCeE
Confidence 5689999999999999999998876 3 332221 222222 22233 3344444444 467999
Q ss_pred EEEcCCCCC
Q 047700 81 IILDDIWAN 89 (629)
Q Consensus 81 lVlDdv~~~ 89 (629)
+++|+++-.
T Consensus 286 vFiDeIDAI 294 (802)
T KOG0733|consen 286 VFIDEIDAI 294 (802)
T ss_pred EEeeccccc
Confidence 999999754
No 328
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.07 E-value=0.11 Score=54.49 Aligned_cols=86 Identities=22% Similarity=0.305 Sum_probs=56.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHh-----C----Cc-----ccCCCHHH-
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQL-----G----LE-----LCKGTESE- 65 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l-----~----~~-----~~~~~~~~- 65 (629)
++|.|-+|+|||+|+.++....... +=+.++++-+.+.- .+.++.+++...- + .. ........
T Consensus 164 ~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~R 242 (494)
T CHL00060 164 IGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGAR 242 (494)
T ss_pred EeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHHH
Confidence 6899999999999999988774321 12778888887764 4677777776511 1 00 11112111
Q ss_pred -----HHHHHHHHHc--CC-cEEEEEcCCCC
Q 047700 66 -----RARTLFDQLW--KE-KILIILDDIWA 88 (629)
Q Consensus 66 -----~~~~l~~~l~--~k-~~LlVlDdv~~ 88 (629)
.+..+.++++ ++ .+||++||+-.
T Consensus 243 ~~a~~~A~tiAEyfrd~g~~~VLll~DslTR 273 (494)
T CHL00060 243 MRVGLTALTMAEYFRDVNKQDVLLFIDNIFR 273 (494)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEcccchH
Confidence 2345666664 44 99999999943
No 329
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.06 E-value=0.55 Score=49.71 Aligned_cols=178 Identities=13% Similarity=0.076 Sum_probs=93.3
Q ss_pred EEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcc-----cCCCHHHHHHHHHHHHc---
Q 047700 4 VYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLEL-----CKGTESERARTLFDQLW--- 75 (629)
Q Consensus 4 i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~l~~~l~--- 75 (629)
..|.-|+||||+|+-+..-..-... ...++.+.....++|...-..+. .....-+.++.|.+...
T Consensus 43 fsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P 115 (515)
T COG2812 43 FSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAP 115 (515)
T ss_pred hcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCC
Confidence 4699999999999999876542210 11112222222233332211110 11111223455555554
Q ss_pred --CCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeeccccccc-----cccc--CCCCChHHHHHHHHHH-hhcc
Q 047700 76 --KEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQNVLV-----SEMH--SKNKPLAEWKDALQKL-RSSA 143 (629)
Q Consensus 76 --~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~-----~~~~--l~~~~~~~w~~~~~~~-~~~~ 143 (629)
+|--..|+|+|... ..|+.+...+-.....-+.|+.|++.+-.. ++.. ++..+.+.-...++.+ ..+-
T Consensus 116 ~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~ 195 (515)
T COG2812 116 SEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEG 195 (515)
T ss_pred ccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcC
Confidence 67778889999854 668888777755555667777777766442 2222 4555776666666655 2111
Q ss_pred CCcchhhhhhhhccccccCchHHHHHHHhhcccCCCCCCCHHHHHHH
Q 047700 144 GKLDALVYSSIELSYNYLIDQVVKSAFLLCGLLKQPYDAPVMDLLKY 190 (629)
Q Consensus 144 ~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~ 190 (629)
-..++..+..+.-.-++---+ .-+.+-+...|.. ..++...+-.+
T Consensus 196 I~~e~~aL~~ia~~a~Gs~RD-alslLDq~i~~~~-~~It~~~v~~~ 240 (515)
T COG2812 196 INIEEDALSLIARAAEGSLRD-ALSLLDQAIAFGE-GEITLESVRDM 240 (515)
T ss_pred CccCHHHHHHHHHHcCCChhh-HHHHHHHHHHccC-CcccHHHHHHH
Confidence 122333333333333332223 4556666666665 45655554433
No 330
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.05 E-value=0.14 Score=49.65 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=52.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH-hCCc-cc-CCCHHH---HHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQ-LGLE-LC-KGTESE---RARTLFDQL 74 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~~-~~-~~~~~~---~~~~l~~~l 74 (629)
|+=|+|..|+||||+|-+++-..... -..++||+.-..|+.+.+.. |+.. +..- .. ..+-+. .++.+....
T Consensus 62 ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~ 138 (279)
T COG0468 62 ITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLARSG 138 (279)
T ss_pred EEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHHHhc
Confidence 35689999999999997776655543 33789999988899877654 4444 3221 11 111122 222333222
Q ss_pred cCCcEEEEEcCCC
Q 047700 75 WKEKILIILDDIW 87 (629)
Q Consensus 75 ~~k~~LlVlDdv~ 87 (629)
..+--|+|+|.|-
T Consensus 139 ~~~i~LvVVDSva 151 (279)
T COG0468 139 AEKIDLLVVDSVA 151 (279)
T ss_pred cCCCCEEEEecCc
Confidence 2346789999984
No 331
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.04 E-value=0.02 Score=51.36 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=23.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
|++|+|..|+|||||++.+......+
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhc
Confidence 58999999999999999999887654
No 332
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.03 E-value=0.15 Score=49.91 Aligned_cols=86 Identities=17% Similarity=0.220 Sum_probs=47.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCH--HHHHHHHHHHhCCcc----cCCCHHHH-HHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANV--EKIQDEIAEQLGLEL----CKGTESER-ARTLFDQ 73 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~----~~~~~~~~-~~~l~~~ 73 (629)
++.++|.+|+||||.+..+......+ -..+..|+... |.. .+-++..++..+... ...+.... ...+...
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998776543 24566676543 322 222333444444321 11122221 2333333
Q ss_pred HcCCcEEEEEcCCCCC
Q 047700 74 LWKEKILIILDDIWAN 89 (629)
Q Consensus 74 l~~k~~LlVlDdv~~~ 89 (629)
.....-++++|-....
T Consensus 151 ~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 151 KARNIDVVLIDTAGRL 166 (272)
T ss_pred HHCCCCEEEEeCCCCC
Confidence 3344566778877544
No 333
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.02 E-value=0.017 Score=52.92 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
++.|+|+.|+||||+|+.+.....
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999988754
No 334
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.99 E-value=0.076 Score=54.96 Aligned_cols=113 Identities=17% Similarity=0.248 Sum_probs=62.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCc-------ccCCCHHH------HHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLE-------LCKGTESE------RAR 68 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-------~~~~~~~~------~~~ 68 (629)
++|+|..|+|||||++.++..... ...++.+.-.+...+.++.+..+..-+.. ..+..... .+.
T Consensus 159 i~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~ 235 (432)
T PRK06793 159 IGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLAT 235 (432)
T ss_pred EEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHH
Confidence 689999999999999999887643 22333332233466777766665543211 11222211 123
Q ss_pred HHHHHHc--CCcEEEEEcCCCCC-cchhhhhhccCC-CCCCcEEEEeeccccc
Q 047700 69 TLFDQLW--KEKILIILDDIWAN-IDLETVGILFGG-AHRGCKILLTPRYQNV 117 (629)
Q Consensus 69 ~l~~~l~--~k~~LlVlDdv~~~-~~~~~l~~~~~~-~~~gs~ilvTTR~~~v 117 (629)
.+.++++ |+.+|+++||+-.- +....+...... ...|--..+.|....+
T Consensus 236 ~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~~~~s~l~~L 288 (432)
T PRK06793 236 SIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMKKL 288 (432)
T ss_pred HHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeeeeeeccchhH
Confidence 3444443 89999999999544 223333332211 1125555555544443
No 335
>PTZ00035 Rad51 protein; Provisional
Probab=94.99 E-value=0.19 Score=50.81 Aligned_cols=55 Identities=27% Similarity=0.388 Sum_probs=38.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh---cC-CCCeEEEEEeCCCcCHHHHHHHHHHHhCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK---EK-LFDQVVFVLKSSTANVEKIQDEIAEQLGL 56 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 56 (629)
++.|+|..|+|||||+..++-.... .+ .=..++||+....|+.+++. .++++.+.
T Consensus 120 iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~-~ia~~~g~ 178 (337)
T PTZ00035 120 ITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIV-QIAERFGL 178 (337)
T ss_pred EEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHH-HHHHHhCC
Confidence 4679999999999999888765442 11 12356799988888877754 34555543
No 336
>PRK13695 putative NTPase; Provisional
Probab=94.96 E-value=0.036 Score=50.42 Aligned_cols=34 Identities=35% Similarity=0.426 Sum_probs=26.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVL 36 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~ 36 (629)
|+|+|.+|+|||||++.+++..... .+....|++
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~~ 36 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFYT 36 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEc
Confidence 7899999999999999999886643 355444543
No 337
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.96 E-value=0.057 Score=47.74 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=43.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc---------------CCCCe----EEEEEeCCCcCHHHHHHHHHHHhCCcccCCC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE---------------KLFDQ----VVFVLKSSTANVEKIQDEIAEQLGLELCKGT 62 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~---------------~~F~~----~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 62 (629)
++|.|-.|+||+|||+++..-.... ..|.+ -+|-+.+..|+.+--...|++.--.-..+.+
T Consensus 42 laiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~ 121 (267)
T COG4167 42 LAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLE 121 (267)
T ss_pred EEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCC
Confidence 7899999999999999997442210 01111 1344556666665555555544332233445
Q ss_pred HHHHHHHHHHHHc
Q 047700 63 ESERARTLFDQLW 75 (629)
Q Consensus 63 ~~~~~~~l~~~l~ 75 (629)
.....+++.+.|+
T Consensus 122 ~~~R~~~i~~TL~ 134 (267)
T COG4167 122 PEQRRKQIFETLR 134 (267)
T ss_pred hHHHHHHHHHHHH
Confidence 5556667777765
No 338
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.94 E-value=0.019 Score=52.97 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=20.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|.|+|..|+||||+|+.+....
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998764
No 339
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.91 E-value=0.019 Score=53.96 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=23.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
+|.++||+|+||||..|+++.....+
T Consensus 21 ~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 21 IILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred EEEEEecCCCCchhHHHHHHHHHhhc
Confidence 36789999999999999999887765
No 340
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.91 E-value=0.15 Score=48.79 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=32.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDE 49 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 49 (629)
++.|+|..|+|||++|.++....... =..++|++..+.. .++.+.
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~~--~~~~~~ 71 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENTS--KSYLKQ 71 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCCH--HHHHHH
Confidence 46799999999999999986554322 4577888886643 444444
No 341
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.89 E-value=0.069 Score=55.31 Aligned_cols=84 Identities=17% Similarity=0.267 Sum_probs=46.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCc-------ccCCC------HHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS-TANVEKIQDEIAEQLGLE-------LCKGT------ESER 66 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~------~~~~ 66 (629)
+++|+|..|+|||||++.+..... .+..+...+.. ..++.++..+.+.+-+.. ..+.. ..+.
T Consensus 157 ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~ 232 (434)
T PRK07196 157 RVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATEL 232 (434)
T ss_pred EEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHH
Confidence 379999999999999999987543 23333333332 223444444444332211 11111 1112
Q ss_pred HHHHHHHH--cCCcEEEEEcCCCC
Q 047700 67 ARTLFDQL--WKEKILIILDDIWA 88 (629)
Q Consensus 67 ~~~l~~~l--~~k~~LlVlDdv~~ 88 (629)
...+.++. +|+.+|+++||+-.
T Consensus 233 a~~iAEyfr~~g~~Vll~~Dsltr 256 (434)
T PRK07196 233 CHAIATYYRDKGHDVLLLVDSLTR 256 (434)
T ss_pred HHHHHHHhhhccCCEEEeecchhH
Confidence 23334333 38999999999843
No 342
>PRK15453 phosphoribulokinase; Provisional
Probab=94.89 E-value=0.15 Score=49.36 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|.|-+|+||||+|+.+.+...
T Consensus 7 iI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 7 IIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999986554
No 343
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.88 E-value=0.18 Score=50.72 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+..+.|+.|+||||+|+.+.+....
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~ 25 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRR 25 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999999988763
No 344
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.87 E-value=0.017 Score=52.05 Aligned_cols=40 Identities=18% Similarity=0.072 Sum_probs=30.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTAN 42 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 42 (629)
+-+.|+.|+|||.||+.+.+-... +..+..+-+++++-.+
T Consensus 6 ~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 6 FLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 568999999999999999988774 2356667777765433
No 345
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.08 Score=58.34 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=57.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHH-HHHhCCcccCC-CHHHHHHHHHHHHcCCcE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEI-AEQLGLELCKG-TESERARTLFDQLWKEKI 79 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i-~~~l~~~~~~~-~~~~~~~~l~~~l~~k~~ 79 (629)
.-.+|+.|||||.||+.+....--.. +..+- |||.+.+.+= .+++-..+++. .-++ .-++-+.++.++|
T Consensus 524 FlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR------~DMSEy~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~Py 594 (786)
T COG0542 524 FLFLGPTGVGKTELAKALAEALFGDE--QALIR------IDMSEYMEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPY 594 (786)
T ss_pred EEeeCCCcccHHHHHHHHHHHhcCCC--cccee------echHHHHHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCC
Confidence 34689999999999999987753221 22333 3554444322 23332222222 1111 2345666778888
Q ss_pred -EEEEcCCCCC--cchhhhhhccCCC-----------CCCcEEEEeec
Q 047700 80 -LIILDDIWAN--IDLETVGILFGGA-----------HRGCKILLTPR 113 (629)
Q Consensus 80 -LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~ilvTTR 113 (629)
+|.||+|.+. +..+-+...+.++ .+.+-||.||-
T Consensus 595 SViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 595 SVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred eEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 6669999765 4444444444322 13466666665
No 346
>PHA02244 ATPase-like protein
Probab=94.85 E-value=0.13 Score=51.76 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|-|+|..|+|||+||+++.....
T Consensus 122 VLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999998754
No 347
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.85 E-value=0.18 Score=48.49 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=60.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCC---------Ce-EEEEEeCCCcC-HHHHHHHHHHHhCCcc-----------
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLF---------DQ-VVFVLKSSTAN-VEKIQDEIAEQLGLEL----------- 58 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F---------~~-~~wv~vs~~~~-~~~~~~~i~~~l~~~~----------- 58 (629)
|..|+|.+|+|||+||..++-.......| .. +++++.-.+.+ +.+-++.+...++...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 45789999999999999998765432111 22 34455443332 3333444444332100
Q ss_pred ------cC---CCHHHHHHHHHHHH-cCCcEEEEEcCCCC--------CcchhhhhhccCC--CCCCcEEEEeecccccc
Q 047700 59 ------CK---GTESERARTLFDQL-WKEKILIILDDIWA--------NIDLETVGILFGG--AHRGCKILLTPRYQNVL 118 (629)
Q Consensus 59 ------~~---~~~~~~~~~l~~~l-~~k~~LlVlDdv~~--------~~~~~~l~~~~~~--~~~gs~ilvTTR~~~v~ 118 (629)
.. .......+.+.+.+ ..+.-++|+|-+-. ......+...+.. ...|+.|++++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 00 01122334444444 35677899997632 1223333333321 23477888888866543
No 348
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=94.85 E-value=0.17 Score=52.29 Aligned_cols=83 Identities=18% Similarity=0.278 Sum_probs=55.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcC-HHHHHHHHHHHhCCc-------ccCCCHHH------HH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTAN-VEKIQDEIAEQLGLE-------LCKGTESE------RA 67 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~------~~ 67 (629)
++|.|-+|+|||+|+.++.+.... +.++++-+.+... ..++.+++...-..+ ..++...+ .+
T Consensus 143 igIF~gaGvgk~~L~~~ia~~~~~----~v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~A 218 (436)
T PRK02118 143 IPIFSVSGEPYNALLARIALQAEA----DIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMA 218 (436)
T ss_pred EEEEeCCCCCHHHHHHHHHHhhCC----CeEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHH
Confidence 689999999999999999888763 5678888888764 566666555442111 11222222 12
Q ss_pred HHHHHHHc---CCcEEEEEcCCCC
Q 047700 68 RTLFDQLW---KEKILIILDDIWA 88 (629)
Q Consensus 68 ~~l~~~l~---~k~~LlVlDdv~~ 88 (629)
-.+.++++ ++.+|+++||+-.
T Consensus 219 ltiAEyfrd~g~~~VLli~DdlTr 242 (436)
T PRK02118 219 LAVAEKFALEGKKKVLVLLTDMTN 242 (436)
T ss_pred HHHHHHHHhcCCCCEEEeccCchH
Confidence 34555554 4899999999944
No 349
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.84 E-value=0.023 Score=49.25 Aligned_cols=23 Identities=39% Similarity=0.613 Sum_probs=20.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998764
No 350
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.84 E-value=0.11 Score=54.37 Aligned_cols=84 Identities=14% Similarity=0.251 Sum_probs=47.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH--hCCc-----ccCCCHHH------HH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQ--LGLE-----LCKGTESE------RA 67 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~--l~~~-----~~~~~~~~------~~ 67 (629)
+++|+|..|+|||||++.+....... .+++++.--+.-++.++.++.+.. +... ..+..... .+
T Consensus 160 ~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a 236 (438)
T PRK07721 160 RVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTA 236 (438)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHHH
Confidence 37899999999999999998765432 244444323333455554432221 1111 11121111 12
Q ss_pred HHHHHHH--cCCcEEEEEcCCC
Q 047700 68 RTLFDQL--WKEKILIILDDIW 87 (629)
Q Consensus 68 ~~l~~~l--~~k~~LlVlDdv~ 87 (629)
-.+.+++ +|+.+|+++||+-
T Consensus 237 ~~iAEyfr~~g~~Vll~~Dslt 258 (438)
T PRK07721 237 TAIAEYFRDQGLNVMLMMDSVT 258 (438)
T ss_pred HHHHHHHHHCCCcEEEEEeChH
Confidence 3344444 3999999999983
No 351
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.83 E-value=0.025 Score=51.49 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
+|.|+|..|+||||+|+.+.......
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999887543
No 352
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.80 E-value=0.29 Score=48.11 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=34.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQ 53 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 53 (629)
++.|.|.+|+||||+|..+......+ +=..++|+.... +..++.+.+...
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHHH
Confidence 46789999999999999988776533 124677887655 345555555444
No 353
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.80 E-value=0.14 Score=56.02 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+-++|..|+||||+|+.+.+..-
T Consensus 41 yLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 41 FLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred EEEECCCCCCHHHHHHHHHHhhc
Confidence 35899999999999999987753
No 354
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.80 E-value=0.03 Score=58.39 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+.++|..|+|||++|+++++....
T Consensus 220 VLL~GPPGTGKT~LAraIA~el~~ 243 (438)
T PTZ00361 220 VILYGPPGTGKTLLAKAVANETSA 243 (438)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCC
Confidence 568999999999999999997653
No 355
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.79 E-value=0.16 Score=51.25 Aligned_cols=81 Identities=22% Similarity=0.376 Sum_probs=57.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCc-------ccCCCHHH------HH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS-TANVEKIQDEIAEQLGLE-------LCKGTESE------RA 67 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~------~~ 67 (629)
+||..-+|+|||||.-++++..+ +|..+=.-+.+ .--++++.++.+..-+.+ ..+.+.-. .+
T Consensus 166 iGIFAgsGVGKStLLgMiar~t~----aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~A 241 (441)
T COG1157 166 IGIFAGSGVGKSTLLGMIARNTE----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTA 241 (441)
T ss_pred eEEEecCCCcHHHHHHHHhcccc----CCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHH
Confidence 78999999999999999998766 77776555555 456788877777665432 12222211 23
Q ss_pred HHHHHHHc--CCcEEEEEcCC
Q 047700 68 RTLFDQLW--KEKILIILDDI 86 (629)
Q Consensus 68 ~~l~~~l~--~k~~LlVlDdv 86 (629)
..|.++.+ ||++|+++|-|
T Consensus 242 t~IAEyFRDqG~~VLL~mDSl 262 (441)
T COG1157 242 TTIAEYFRDQGKRVLLIMDSL 262 (441)
T ss_pred HHHHHHHHhCCCeEEEEeecH
Confidence 46666665 89999999998
No 356
>PRK13949 shikimate kinase; Provisional
Probab=94.78 E-value=0.025 Score=51.06 Aligned_cols=23 Identities=39% Similarity=0.325 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|.|+|+.|+||||+|+.+.+...
T Consensus 4 I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998865
No 357
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=94.77 E-value=0.15 Score=53.37 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=51.2
Q ss_pred EEEEcCCCCcHHHHH-HHHHHHhhhcCCCCeE-EEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHHH-----
Q 047700 2 IGVYGIGGIGKTTLM-HEVLFEAKKEKLFDQV-VFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESER----- 66 (629)
Q Consensus 2 i~i~G~gG~GKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 66 (629)
++|.|-.|+|||||| .++.+... -+.+ +++-+.+.. .+.++.+.+...-..+ ..++.....
T Consensus 144 ~~I~g~~g~GKt~Lal~~I~~q~~----~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~ 219 (485)
T CHL00059 144 ELIIGDRQTGKTAVATDTILNQKG----QNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPY 219 (485)
T ss_pred EEeecCCCCCHHHHHHHHHHhccc----CCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHH
Confidence 689999999999995 56665532 4555 677787654 5677777665442111 112222111
Q ss_pred -HHHHHHHH--cCCcEEEEEcCCCC
Q 047700 67 -ARTLFDQL--WKEKILIILDDIWA 88 (629)
Q Consensus 67 -~~~l~~~l--~~k~~LlVlDdv~~ 88 (629)
...+.+++ +|+.+|+|+||+-.
T Consensus 220 ~a~aiAEyfr~~G~~VLlv~DdlTr 244 (485)
T CHL00059 220 TGAALAEYFMYRGRHTLIIYDDLSK 244 (485)
T ss_pred HHhhHHHHHHHcCCCEEEEEcChhH
Confidence 12233333 38999999999944
No 358
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=94.77 E-value=0.15 Score=54.11 Aligned_cols=83 Identities=20% Similarity=0.266 Sum_probs=53.0
Q ss_pred EEEEcCCCCcHHHHH-HHHHHHhhhcCCCCeE-EEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHH------
Q 047700 2 IGVYGIGGIGKTTLM-HEVLFEAKKEKLFDQV-VFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESE------ 65 (629)
Q Consensus 2 i~i~G~gG~GKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------ 65 (629)
++|.|..|+|||+|| .++.+... -+.+ +++-+.+.. .+.++.+.+...-..+ ..++....
T Consensus 164 ~~I~g~~g~GKt~Lal~~i~~~~~----~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~ 239 (501)
T TIGR00962 164 ELIIGDRQTGKTAVAIDTIINQKD----SDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPY 239 (501)
T ss_pred EEeecCCCCCccHHHHHHHHhhcC----CCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHH
Confidence 689999999999996 67777642 5665 788887755 4677777766542211 11221111
Q ss_pred HHHHHHHHHc--CCcEEEEEcCCCC
Q 047700 66 RARTLFDQLW--KEKILIILDDIWA 88 (629)
Q Consensus 66 ~~~~l~~~l~--~k~~LlVlDdv~~ 88 (629)
....+.++++ |+.+|+|+||+-.
T Consensus 240 ~a~aiAEyfrd~G~~VLlv~Ddltr 264 (501)
T TIGR00962 240 TGCTMAEYFRDNGKHALIIYDDLSK 264 (501)
T ss_pred HHHHHHHHHHHcCCCEEEEecchHH
Confidence 1223334443 8999999999943
No 359
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.74 E-value=0.034 Score=53.15 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
+++|.|..|+|||||++.+.......
T Consensus 35 iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 35 IVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 58999999999999999999887754
No 360
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.73 E-value=0.048 Score=53.80 Aligned_cols=40 Identities=30% Similarity=0.436 Sum_probs=29.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTAN 42 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 42 (629)
+|+|+|.||+||||+|..+..-...++ + .+.-|+.....+
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D~q~~ 41 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCDPKAD 41 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCCCCCC
Confidence 489999999999999999988877654 2 455556554443
No 361
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.72 E-value=0.026 Score=49.82 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=25.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKL 28 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~ 28 (629)
|++|+|+.|+|||||..++....+.+++
T Consensus 4 Il~ivG~k~SGKTTLie~lv~~L~~~G~ 31 (161)
T COG1763 4 ILGIVGYKNSGKTTLIEKLVRKLKARGY 31 (161)
T ss_pred EEEEEecCCCChhhHHHHHHHHHHhCCc
Confidence 6899999999999999999999887644
No 362
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.72 E-value=0.037 Score=53.13 Aligned_cols=47 Identities=30% Similarity=0.302 Sum_probs=40.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQ 47 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 47 (629)
||||.|.+|+|||||.-.+-.....++|=-.++=|+-|.+|+.=.++
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 69999999999999999999998888777778889999998754443
No 363
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=94.70 E-value=0.15 Score=53.92 Aligned_cols=83 Identities=17% Similarity=0.253 Sum_probs=51.7
Q ss_pred EEEEcCCCCcHHHHH-HHHHHHhhhcCCCCeE-EEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHHH-----
Q 047700 2 IGVYGIGGIGKTTLM-HEVLFEAKKEKLFDQV-VFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESER----- 66 (629)
Q Consensus 2 i~i~G~gG~GKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 66 (629)
++|.|-.|+|||+|| .+|.+... -+.+ +++-+.+.. .+.++.+.+...-..+ ..++.....
T Consensus 165 ~~Ifg~~g~GKt~lal~~i~~~~~----~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~ 240 (502)
T PRK09281 165 ELIIGDRQTGKTAIAIDTIINQKG----KDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPY 240 (502)
T ss_pred EEeecCCCCCchHHHHHHHHHhcC----CCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHH
Confidence 689999999999995 66666532 4565 788887765 4577766665542211 112222111
Q ss_pred -HHHHHHHHc--CCcEEEEEcCCCC
Q 047700 67 -ARTLFDQLW--KEKILIILDDIWA 88 (629)
Q Consensus 67 -~~~l~~~l~--~k~~LlVlDdv~~ 88 (629)
+-.+.++++ |+.+|+|+||+-.
T Consensus 241 ~a~tiAEyfrd~G~~VLli~DdlTr 265 (502)
T PRK09281 241 AGCAMGEYFMDNGKDALIVYDDLSK 265 (502)
T ss_pred HHHHHHHHHHHcCCCEEEEecCchH
Confidence 223334443 8999999999943
No 364
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=0.007 Score=54.42 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=30.3
Q ss_pred cccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceecccccccccccccccccccccccccccc
Q 047700 488 QFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESL 562 (629)
Q Consensus 488 ~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 562 (629)
.++.++. |.+.+|..+.++.-...-+-.|+|+.|+|++|+.+++-...... .|++|+.|.|.+++..
T Consensus 123 ~l~~i~~--l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~------~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 123 DLRSIKS--LSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL------KLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchhhh--heeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH------HhhhhHHHHhcCchhh
Confidence 3344455 55555555555321111123455555555555554443222211 3555555555554443
No 365
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.69 E-value=0.24 Score=45.93 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=23.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
+|+|.|..|+||||+|+.+.+.....
T Consensus 5 ~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 5 FIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999887653
No 366
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.67 E-value=0.1 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|.|.|++|+||||+|+.+.+...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999988754
No 367
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.66 E-value=0.039 Score=51.22 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
..|.|.+|+||||+++.+..-....
T Consensus 21 ~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 21 SVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp EEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhC
Confidence 5688999999999999988776664
No 368
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.66 E-value=0.06 Score=52.85 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
||||.|..|+||||+|+.+..-..
T Consensus 64 IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 64 IISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 689999999999999988866554
No 369
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.66 E-value=0.044 Score=55.79 Aligned_cols=101 Identities=17% Similarity=0.150 Sum_probs=60.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+-|||..|.|||.|+-.+|+...++.. ......+++.++-+.+..-.+. .+....+.+.+.++..+|
T Consensus 65 lYl~G~vG~GKT~Lmd~f~~~lp~~~k----------~R~HFh~Fm~~vh~~l~~~~~~---~~~l~~va~~l~~~~~lL 131 (362)
T PF03969_consen 65 LYLWGPVGRGKTMLMDLFYDSLPIKRK----------RRVHFHEFMLDVHSRLHQLRGQ---DDPLPQVADELAKESRLL 131 (362)
T ss_pred EEEECCCCCchhHHHHHHHHhCCcccc----------ccccccHHHHHHHHHHHHHhCC---CccHHHHHHHHHhcCCEE
Confidence 568999999999999999999765311 1122344555555555332211 123455667777888899
Q ss_pred EEcCCCCCcchhh-----hhhccCCCCCCcEEEEeecccccc
Q 047700 82 ILDDIWANIDLET-----VGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 82 VlDdv~~~~~~~~-----l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
.+|+..-.+--++ +...+. ..| .|+|+|-+..-.
T Consensus 132 cfDEF~V~DiaDAmil~rLf~~l~--~~g-vvlVaTSN~~P~ 170 (362)
T PF03969_consen 132 CFDEFQVTDIADAMILKRLFEALF--KRG-VVLVATSNRPPE 170 (362)
T ss_pred EEeeeeccchhHHHHHHHHHHHHH--HCC-CEEEecCCCChH
Confidence 9999865533222 333331 234 566777665543
No 370
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.66 E-value=0.026 Score=51.28 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|.|+|+.|+||||+|+.+.....
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998864
No 371
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.65 E-value=0.024 Score=49.09 Aligned_cols=43 Identities=30% Similarity=0.442 Sum_probs=32.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGL 56 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 56 (629)
+|.|-|.+|+||||+|+.+.++.--+ +| +.=.++++|++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCC
Confidence 58999999999999999999987644 22 223466777777654
No 372
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.65 E-value=0.27 Score=46.92 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=28.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSST 40 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 40 (629)
++.|.|.+|+||||+|..+......+ -+.++|++....
T Consensus 22 ~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~ 59 (229)
T TIGR03881 22 FVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEES 59 (229)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCC
Confidence 36899999999999999876654333 457788876443
No 373
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.63 E-value=0.13 Score=53.22 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=47.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHH------HH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESE------RA 67 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------~~ 67 (629)
++|+|..|+|||||++.+...... +..+..-+.+.. .+.++.++.+..-+.+ ..++.... .+
T Consensus 140 i~I~G~sG~GKTtLl~~i~~~~~~----~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a 215 (413)
T TIGR03497 140 VGIFAGSGVGKSTLLGMIARNAKA----DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTA 215 (413)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHH
Confidence 789999999999999988875543 222333344432 4555555544332111 11222222 12
Q ss_pred HHHHHHHc--CCcEEEEEcCCC
Q 047700 68 RTLFDQLW--KEKILIILDDIW 87 (629)
Q Consensus 68 ~~l~~~l~--~k~~LlVlDdv~ 87 (629)
..+.++++ |+.+|+++||+-
T Consensus 216 ~tiAEyfr~~G~~Vll~~Dslt 237 (413)
T TIGR03497 216 TAIAEYFRDQGKDVLLMMDSVT 237 (413)
T ss_pred HHHHHHHHHCCCCEEEEEcCcH
Confidence 34444443 999999999994
No 374
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.63 E-value=0.022 Score=52.20 Aligned_cols=22 Identities=41% Similarity=0.671 Sum_probs=20.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
+|+|+|..|+||||||+.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999885
No 375
>PRK13947 shikimate kinase; Provisional
Probab=94.62 E-value=0.028 Score=50.93 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
|.|+|+.|+||||+|+.+.+....
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999988653
No 376
>PRK14532 adenylate kinase; Provisional
Probab=94.61 E-value=0.16 Score=46.80 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|.|+.|+||||+|+.+....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998654
No 377
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.59 E-value=0.041 Score=44.13 Aligned_cols=25 Identities=44% Similarity=0.570 Sum_probs=22.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
++.+.|.+|+||||+|..+....+.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999888765
No 378
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.59 E-value=0.16 Score=46.56 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
++.|.|..|+||||+|+.+......
T Consensus 20 ~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 20 VIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999987653
No 379
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.58 E-value=0.038 Score=51.48 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=22.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+|+|+|+.|+||||||+.+......
T Consensus 26 ~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 26 VLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999887643
No 380
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.58 E-value=0.03 Score=50.84 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|.|.|.+|+||||+|+.+.+...
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999999843
No 381
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.57 E-value=0.2 Score=46.36 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=27.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCC--------CeEEEEEeCCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLF--------DQVVFVLKSST 40 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~ 40 (629)
++.|+|.+|+||||++..+.........| ..++|+.....
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 35799999999999999988877653333 24678876555
No 382
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.54 E-value=0.031 Score=49.60 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|.|+|+.|+||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987764
No 383
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.53 E-value=0.025 Score=52.64 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
++||+|..|.||||||+.+..=
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhcc
Confidence 4799999999999999999644
No 384
>PRK04328 hypothetical protein; Provisional
Probab=94.52 E-value=0.2 Score=48.48 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=28.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSST 40 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 40 (629)
++-|.|.+|+|||+||..+......+ -+..+||+..+.
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~ 62 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH 62 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence 36789999999999998876554333 466788877663
No 385
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.52 E-value=0.096 Score=48.68 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+|+|.|+.|+||||+|+.+.+....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988753
No 386
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.51 E-value=0.029 Score=51.11 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|.+.|+.|+||||+|+.+.....
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999987753
No 387
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.50 E-value=0.031 Score=53.42 Aligned_cols=31 Identities=29% Similarity=0.209 Sum_probs=22.6
Q ss_pred EEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE
Q 047700 4 VYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVL 36 (629)
Q Consensus 4 i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~ 36 (629)
|+|++|+||||+++.+.+..... -..++-|+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~--~~~~~~vN 31 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN--GRDVYIVN 31 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc--cCCceEEE
Confidence 68999999999999999887654 23344444
No 388
>PRK06820 type III secretion system ATPase; Validated
Probab=94.49 E-value=0.23 Score=51.71 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=46.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCC-------cccCCCHHH------HH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGL-------ELCKGTESE------RA 67 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~------~~ 67 (629)
++|+|..|+|||||++.+..... -+..+..-+.+.- .+.++.++.+..-.. ...+..... .+
T Consensus 166 i~I~G~sG~GKStLl~~I~~~~~----~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a~~~a 241 (440)
T PRK06820 166 IGIFAAAGVGKSTLLGMLCADSA----ADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTA 241 (440)
T ss_pred EEEECCCCCChHHHHHHHhccCC----CCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999999877543 3445555555542 233333333221100 011111111 12
Q ss_pred HHHHHHHc--CCcEEEEEcCCC
Q 047700 68 RTLFDQLW--KEKILIILDDIW 87 (629)
Q Consensus 68 ~~l~~~l~--~k~~LlVlDdv~ 87 (629)
..+.++++ |+.+|+++||+-
T Consensus 242 ~tiAEyfrd~G~~VLl~~Dslt 263 (440)
T PRK06820 242 TTIAEYFRDRGKKVLLMADSLT 263 (440)
T ss_pred HHHHHHHHHcCCCEEEEccchh
Confidence 23444443 999999999994
No 389
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.47 E-value=0.04 Score=52.12 Aligned_cols=46 Identities=28% Similarity=0.317 Sum_probs=32.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKI 46 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 46 (629)
+|||.|.+|+|||||.-.+......+++=-.++=|+-|.+|+-=.+
T Consensus 31 ~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 31 VIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred EEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 5899999999999999999888877655556777888888764443
No 390
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.47 E-value=0.08 Score=59.31 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=45.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcC-CcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWK-EKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~-k~~L 80 (629)
+-++|+.|+|||++|+.+..... ...+.+++++-.+.. .+.+-++...+-... +....+.+.++. ..-+
T Consensus 491 ~Lf~GP~GvGKT~lAk~LA~~l~-----~~~i~id~se~~~~~----~~~~LiG~~~gyvg~-~~~g~L~~~v~~~p~sV 560 (758)
T PRK11034 491 FLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERH----TVSRLIGAPPGYVGF-DQGGLLTDAVIKHPHAV 560 (758)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-----CCcEEeechhhcccc----cHHHHcCCCCCcccc-cccchHHHHHHhCCCcE
Confidence 56899999999999999987763 123344554322111 121222322111000 011123334443 3468
Q ss_pred EEEcCCCCC--cchhhhhhcc
Q 047700 81 IILDDIWAN--IDLETVGILF 99 (629)
Q Consensus 81 lVlDdv~~~--~~~~~l~~~~ 99 (629)
++||++++. +.++.+...+
T Consensus 561 lllDEieka~~~v~~~LLq~l 581 (758)
T PRK11034 561 LLLDEIEKAHPDVFNLLLQVM 581 (758)
T ss_pred EEeccHhhhhHHHHHHHHHHH
Confidence 999999866 3455554443
No 391
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.47 E-value=0.032 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|.|+|+.|+||||+|+.+.+...
T Consensus 7 I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred EEEECCCCcCHHHHHHHHHHHcC
Confidence 78999999999999999998754
No 392
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.44 E-value=0.067 Score=53.21 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=33.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQD 48 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 48 (629)
++-+.|.||+||||+|.+..-.....+ ..+.=|.....++..+++.
T Consensus 4 iv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 4 IVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred EEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhc
Confidence 467899999999999999766666543 4466676666666555544
No 393
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.43 E-value=0.18 Score=52.16 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=26.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLK 37 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v 37 (629)
||.++|..|+||||.|.++....+.++ + .+..|+.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G-~-kV~lV~~ 136 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKG-F-KPCLVCA 136 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-C-CEEEEcC
Confidence 589999999999999999987765442 2 4445544
No 394
>PLN02796 D-glycerate 3-kinase
Probab=94.42 E-value=0.043 Score=54.71 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=22.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
+|||.|..|+||||||+.+.......
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~~~ 127 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFNAT 127 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhccc
Confidence 48999999999999999999887643
No 395
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.40 E-value=0.029 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|+|..|+||||||+.+....
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998864
No 396
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.40 E-value=0.027 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
++.|+|+.|+|||||++.+....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999997654
No 397
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=94.40 E-value=0.14 Score=53.01 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=47.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHH-hCCc-----ccCCCHHH------HH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQ-LGLE-----LCKGTESE------RA 67 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~-l~~~-----~~~~~~~~------~~ 67 (629)
.++|.|..|+|||||++.+..... -+..+...+.+.. ...++.+..+.. +... ..++.... ..
T Consensus 159 ~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~~~~a 234 (434)
T PRK08472 159 KLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYGAFCA 234 (434)
T ss_pred EEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHHHHHH
Confidence 368999999999999999987643 3444445554543 234443332221 1110 11121111 12
Q ss_pred HHHHHHH--cCCcEEEEEcCCC
Q 047700 68 RTLFDQL--WKEKILIILDDIW 87 (629)
Q Consensus 68 ~~l~~~l--~~k~~LlVlDdv~ 87 (629)
..+.++. +|+.+|+++||+-
T Consensus 235 ~~iAEyFrd~G~~Vll~~DslT 256 (434)
T PRK08472 235 MSVAEYFKNQGLDVLFIMDSVT 256 (434)
T ss_pred HHHHHHHHHcCCCEEEecccch
Confidence 3344444 3999999999994
No 398
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.40 E-value=0.057 Score=47.49 Aligned_cols=26 Identities=31% Similarity=0.666 Sum_probs=22.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
++++.|.+|+||||++..+.......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~ 26 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 68999999999999999998876554
No 399
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.13 Score=49.11 Aligned_cols=67 Identities=27% Similarity=0.377 Sum_probs=44.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHc-CCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLW-KEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~k~~L 80 (629)
|-++|+.|.||+.||++|....... | ..||.+ ++.+.... ..+.++..+++.-+ +|.-.
T Consensus 169 iLLyGPPGTGKSYLAKAVATEAnST--F-----FSvSSS--------DLvSKWmG-----ESEkLVknLFemARe~kPSI 228 (439)
T KOG0739|consen 169 ILLYGPPGTGKSYLAKAVATEANST--F-----FSVSSS--------DLVSKWMG-----ESEKLVKNLFEMARENKPSI 228 (439)
T ss_pred EEEeCCCCCcHHHHHHHHHhhcCCc--e-----EEeehH--------HHHHHHhc-----cHHHHHHHHHHHHHhcCCcE
Confidence 5689999999999999999887643 3 344332 11121111 12345566666555 78899
Q ss_pred EEEcCCCC
Q 047700 81 IILDDIWA 88 (629)
Q Consensus 81 lVlDdv~~ 88 (629)
|.+|.++.
T Consensus 229 IFiDEiDs 236 (439)
T KOG0739|consen 229 IFIDEIDS 236 (439)
T ss_pred EEeehhhh
Confidence 99999963
No 400
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=94.34 E-value=0.083 Score=50.20 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=30.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTAN 42 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 42 (629)
|+|+|.|||||||.|+.+.--.... -..++-|-++.+.|
T Consensus 3 IAiYGKGGIGKST~~~Nlsaala~~--G~kVl~iGCDPK~D 41 (273)
T PF00142_consen 3 IAIYGKGGIGKSTTASNLSAALAEM--GKKVLQIGCDPKAD 41 (273)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESSSST
T ss_pred EEEEcCCCcccChhhhHHHHHHHhc--cceeeEecccCCCc
Confidence 7999999999999999998777665 35677787766654
No 401
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.33 E-value=0.21 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+-|+|..|+||||+|..+....-
T Consensus 48 ~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 48 LLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred EeeECCCCCCHHHHHHHHHHHHc
Confidence 46899999999999999988754
No 402
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.33 E-value=1.4 Score=47.95 Aligned_cols=64 Identities=8% Similarity=0.067 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccc-cccc----cc--cCCCCChHHHHHHHHHH
Q 047700 76 KEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQN-VLVS----EM--HSKNKPLAEWKDALQKL 139 (629)
Q Consensus 76 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~-v~~~----~~--~l~~~~~~~w~~~~~~~ 139 (629)
+++-++|+|+++.. ..++.|...+........+|++|...+ +... +. .+...+..++...+...
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i 190 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYI 190 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHH
Confidence 56778899999855 446667666644334445555554333 2221 11 14455666666655554
No 403
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.31 E-value=0.32 Score=45.01 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=20.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
.|.|.|+.|+||||+|+.+....
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998874
No 404
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.31 E-value=0.03 Score=54.72 Aligned_cols=76 Identities=21% Similarity=0.300 Sum_probs=43.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccC-CCHHHHHHHHHHHHcCCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCK-GTESERARTLFDQLWKEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~~k~~L 80 (629)
+-++|..|+|||++++.......... | .+.-++.|..-+...+++.|-..+....+. ..+ -.+|+.+
T Consensus 36 vLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP----------~~~k~lv 103 (272)
T PF12775_consen 36 VLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYGP----------PGGKKLV 103 (272)
T ss_dssp EEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEEE----------ESSSEEE
T ss_pred EEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCC----------CCCcEEE
Confidence 46899999999999999876544321 1 234556666555555544322222111000 000 1278999
Q ss_pred EEEcCCCCC
Q 047700 81 IILDDIWAN 89 (629)
Q Consensus 81 lVlDdv~~~ 89 (629)
+.+||+.-+
T Consensus 104 ~fiDDlN~p 112 (272)
T PF12775_consen 104 LFIDDLNMP 112 (272)
T ss_dssp EEEETTT-S
T ss_pred EEecccCCC
Confidence 999999654
No 405
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.30 E-value=0.031 Score=50.15 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|+|..|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998775
No 406
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.30 E-value=0.071 Score=52.42 Aligned_cols=41 Identities=29% Similarity=0.430 Sum_probs=30.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANV 43 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 43 (629)
+|+|.|.||+||||+|..+..-...++ ..+.=|+.....+.
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G--~kVlliD~Dpq~n~ 43 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMG--KKVMIVGCDPKADS 43 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCC--CeEEEEEcCCCCCc
Confidence 478889999999999999988876542 24556777655443
No 407
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.29 E-value=0.04 Score=46.35 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
|.|+|..|+|||||.+.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 689999999999999999877543
No 408
>PRK13975 thymidylate kinase; Provisional
Probab=94.27 E-value=0.032 Score=51.84 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=22.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+|.|.|+.|+||||+|+.+.+....
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999988753
No 409
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=94.27 E-value=0.16 Score=53.14 Aligned_cols=83 Identities=19% Similarity=0.321 Sum_probs=47.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHH------H
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESE------R 66 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------~ 66 (629)
.++|+|..|+|||||++.+...... +..+...+.+.. .+.++.++.+..-+.+ ........ .
T Consensus 165 ~~~I~G~sG~GKStLl~~I~~~~~~----~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~~~ 240 (440)
T TIGR01026 165 RIGIFAGSGVGKSTLLGMIARNTEA----DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYV 240 (440)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC----CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHH
Confidence 3789999999999999999876432 233334444432 3455554443321111 11222222 1
Q ss_pred HHHHHHHH--cCCcEEEEEcCCC
Q 047700 67 ARTLFDQL--WKEKILIILDDIW 87 (629)
Q Consensus 67 ~~~l~~~l--~~k~~LlVlDdv~ 87 (629)
+-.+.+++ +|+.+|+++||+-
T Consensus 241 a~t~AE~frd~G~~Vll~~DslT 263 (440)
T TIGR01026 241 ATAIAEYFRDQGKDVLLLMDSVT 263 (440)
T ss_pred HHHHHHHHHHCCCCEEEEEeChH
Confidence 22344444 3999999999993
No 410
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.095 Score=51.65 Aligned_cols=98 Identities=20% Similarity=0.324 Sum_probs=59.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHc-CCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLW-KEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~k~~L 80 (629)
|-+||+.|.|||-||++|++..... |+.|.-+ ++.++- +|. -..++..+++.-+ .....
T Consensus 188 VLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvgS----ElVqKY---iGE------GaRlVRelF~lArekaPsI 247 (406)
T COG1222 188 VLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVGS----ELVQKY---IGE------GARLVRELFELAREKAPSI 247 (406)
T ss_pred eEeeCCCCCcHHHHHHHHHhccCce-------EEEeccH----HHHHHH---hcc------chHHHHHHHHHHhhcCCeE
Confidence 4589999999999999999998765 4544321 121111 111 1224455555555 45788
Q ss_pred EEEcCCCCCc------------chh----hhhhccC--CCCCCcEEEEeeccccccc
Q 047700 81 IILDDIWANI------------DLE----TVGILFG--GAHRGCKILLTPRYQNVLV 119 (629)
Q Consensus 81 lVlDdv~~~~------------~~~----~l~~~~~--~~~~gs~ilvTTR~~~v~~ 119 (629)
|.+|.++... +.+ +|...+. .....-|||..|-..+++.
T Consensus 248 IFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LD 304 (406)
T COG1222 248 IFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILD 304 (406)
T ss_pred EEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccC
Confidence 8899886430 111 2333332 2235678999998888773
No 411
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.22 E-value=0.24 Score=52.40 Aligned_cols=22 Identities=36% Similarity=0.291 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+-++|..|+||||+|+.+.+..
T Consensus 42 ~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 42 YLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999999999999998765
No 412
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.20 E-value=0.039 Score=50.39 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=19.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLF 21 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~ 21 (629)
+|+|+|+.|+||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 413
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.19 E-value=0.1 Score=53.32 Aligned_cols=82 Identities=26% Similarity=0.319 Sum_probs=46.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCC--CHHHHHHHHHHHHc-CC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKG--TESERARTLFDQLW-KE 77 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~-~k 77 (629)
++.|.|.+|+|||||+..++...... -..++||+..+.. ..+. .-+++++...... ..+...+.+.+.+. .+
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs~--~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEESP--EQIK-LRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcCH--HHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 46799999999999999998876644 3567788765432 2322 2244554321110 00011223333333 45
Q ss_pred cEEEEEcCCC
Q 047700 78 KILIILDDIW 87 (629)
Q Consensus 78 ~~LlVlDdv~ 87 (629)
.-++|+|.+.
T Consensus 159 ~~lVVIDSIq 168 (372)
T cd01121 159 PDLVIIDSIQ 168 (372)
T ss_pred CcEEEEcchH
Confidence 6678888873
No 414
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=94.17 E-value=0.13 Score=53.32 Aligned_cols=84 Identities=19% Similarity=0.304 Sum_probs=47.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-cCHHHHHHHHHHHhCC-------cccCCCHHHH------
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSST-ANVEKIQDEIAEQLGL-------ELCKGTESER------ 66 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~~------ 66 (629)
.++|+|..|+|||||++.+...... +.++..-+... -++.++.+.+...-.. ...++.....
T Consensus 177 ri~I~G~sG~GKTTLL~~Ia~~~~~----d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~~~~ 252 (455)
T PRK07960 177 RMGLFAGSGVGKSVLLGMMARYTQA----DVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAY 252 (455)
T ss_pred EEEEECCCCCCccHHHHHHhCCCCC----CEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHHHHHH
Confidence 3789999999999999999876542 33333333332 2455555444322111 0112222221
Q ss_pred HHHHHHHH--cCCcEEEEEcCCCC
Q 047700 67 ARTLFDQL--WKEKILIILDDIWA 88 (629)
Q Consensus 67 ~~~l~~~l--~~k~~LlVlDdv~~ 88 (629)
+-.+.+++ +|+.+|+++||+-.
T Consensus 253 a~tiAEyfrd~G~~Vll~~DslTr 276 (455)
T PRK07960 253 ATRIAEDFRDRGQHVLLIMDSLTR 276 (455)
T ss_pred HHHHHHHHHHcCCCeEEEecchhH
Confidence 22344444 39999999999943
No 415
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.15 E-value=0.21 Score=48.79 Aligned_cols=112 Identities=24% Similarity=0.261 Sum_probs=62.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCH-HHHHHHHHHHhCCcc-----cCCCHHHHHHHHHHHHc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANV-EKIQDEIAEQLGLEL-----CKGTESERARTLFDQLW 75 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i~~~l~~~~-----~~~~~~~~~~~l~~~l~ 75 (629)
|.|+|+.|.|||+|...+-.|.+. .=+...-|........ +-.++.|.+++..+. ...+-.+....+-..|+
T Consensus 52 viiigprgsgkT~li~~~Ls~~q~--~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~ 129 (408)
T KOG2228|consen 52 VIIIGPRGSGKTILIDTRLSDIQE--NGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALK 129 (408)
T ss_pred eEEEccCCCCceEeeHHHHhhHHh--cCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHh
Confidence 579999999999999888888322 1233444555443332 223455555553221 11122333445555554
Q ss_pred ------CCcEEEEEcCCCCCcc------hhhhhhc-cCCCCCCcEEEEeeccc
Q 047700 76 ------KEKILIILDDIWANID------LETVGIL-FGGAHRGCKILLTPRYQ 115 (629)
Q Consensus 76 ------~k~~LlVlDdv~~~~~------~~~l~~~-~~~~~~gs~ilvTTR~~ 115 (629)
+-++.+|+|..+-... +..+.+. -....+=+.|-+|||-.
T Consensus 130 ~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 130 KGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred cCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 3468899988865422 1122221 12345678888999854
No 416
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.14 E-value=0.007 Score=54.42 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=50.0
Q ss_pred hHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceeccCCCeeecCCCceeeecCCCCcc
Q 047700 511 SFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKVM 589 (629)
Q Consensus 511 ~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~ 589 (629)
+..+..++.++.|.+.+|..+.++-....+ ..+|+|+.|+|++|+.+++-... ....+++|+.|.+++.+...
T Consensus 118 le~L~~l~~i~~l~l~~ck~~dD~~L~~l~-----~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 118 LEHLRDLRSIKSLSLANCKYFDDWCLERLG-----GLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHHHhccchhhhheeccccchhhHHHHHhc-----ccccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCchhhh
Confidence 344667788888888888877766443321 15788888888888888764321 45677888888877766433
No 417
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.13 E-value=0.25 Score=49.92 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=36.8
Q ss_pred CCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccccc-cc----ccc--CCCCChHHHHHHHHH
Q 047700 76 KEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQNVL-VS----EMH--SKNKPLAEWKDALQK 138 (629)
Q Consensus 76 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v~-~~----~~~--l~~~~~~~w~~~~~~ 138 (629)
+.+-++|+|+++.. ..-+.+...+.....++.+|++|.+..-. .. +.. +...+.+++...+..
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 55667889998755 33555666665555667777777654432 21 111 445566666555543
No 418
>PRK13946 shikimate kinase; Provisional
Probab=94.12 E-value=0.042 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|.++|+.|+||||+|+.+.+...
T Consensus 13 I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 13 VVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998864
No 419
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.079 Score=54.76 Aligned_cols=68 Identities=31% Similarity=0.368 Sum_probs=43.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHc-CCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLW-KEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~k~~L 80 (629)
|-++|+.|.|||-||++|.....+. | |.+....||.--+ ..+ ...++.++..-+ ..++.
T Consensus 340 VLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFdEm~V------GvG--------ArRVRdLF~aAk~~APcI 399 (752)
T KOG0734|consen 340 VLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFDEMFV------GVG--------ARRVRDLFAAAKARAPCI 399 (752)
T ss_pred eEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchhhhhh------ccc--------HHHHHHHHHHHHhcCCeE
Confidence 5689999999999999999998876 4 3344445543221 110 112233333333 45789
Q ss_pred EEEcCCCCC
Q 047700 81 IILDDIWAN 89 (629)
Q Consensus 81 lVlDdv~~~ 89 (629)
|.+|.++..
T Consensus 400 IFIDEiDav 408 (752)
T KOG0734|consen 400 IFIDEIDAV 408 (752)
T ss_pred EEEechhhh
Confidence 999998754
No 420
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=94.11 E-value=0.22 Score=52.55 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=51.6
Q ss_pred EEEEcCCCCcHHHHH-HHHHHHhhhcCCCCeE-EEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHH------
Q 047700 2 IGVYGIGGIGKTTLM-HEVLFEAKKEKLFDQV-VFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESE------ 65 (629)
Q Consensus 2 i~i~G~gG~GKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------ 65 (629)
++|.|..|+|||||| .++.+.. .-+.+ +++-+.+.. .+.++.+.+...-..+ ...+....
T Consensus 165 ~~I~g~~g~GKt~Lal~~i~~~~----~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~ 240 (502)
T PRK13343 165 ELIIGDRQTGKTAIAIDAIINQK----DSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPF 240 (502)
T ss_pred EEeeCCCCCCccHHHHHHHHhhc----CCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHH
Confidence 689999999999996 6676653 24565 777777765 4677777665442111 11111111
Q ss_pred HHHHHHHHH--cCCcEEEEEcCCCC
Q 047700 66 RARTLFDQL--WKEKILIILDDIWA 88 (629)
Q Consensus 66 ~~~~l~~~l--~~k~~LlVlDdv~~ 88 (629)
....+.++. +|+.+|+|+||+-.
T Consensus 241 ~a~aiAEyfrd~G~~VLlv~DdlTr 265 (502)
T PRK13343 241 AGCAIAEYFRDQGQDALIVYDDLSK 265 (502)
T ss_pred HHHHHHHHHHhCCCCEEEEecchHH
Confidence 112344444 39999999999943
No 421
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.10 E-value=0.3 Score=52.97 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+-++|..|+||||+|+.+.+..-
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhc
Confidence 45899999999999999988753
No 422
>PRK04182 cytidylate kinase; Provisional
Probab=94.10 E-value=0.039 Score=50.40 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988754
No 423
>PRK04132 replication factor C small subunit; Provisional
Probab=94.08 E-value=1.2 Score=50.36 Aligned_cols=164 Identities=9% Similarity=-0.030 Sum_probs=85.5
Q ss_pred CCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 047700 7 IGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILIILDDI 86 (629)
Q Consensus 7 ~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 86 (629)
+.++||||+|.+++++.--++.-..++-++.|.......+ +++++.+....+. -.++.-++|+|++
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~~-------------~~~~~KVvIIDEa 639 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKEFARTKPI-------------GGASFKIIFLDEA 639 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCCc-------------CCCCCEEEEEECc
Confidence 6789999999999998632211134566777765555433 3344333211000 0135679999999
Q ss_pred CCC--cchhhhhhccCCCCCCcEEEEeecccccc-c----cccc--CCCCChHHHHHHHHHHhh--ccCCcchhhhhhhh
Q 047700 87 WAN--IDLETVGILFGGAHRGCKILLTPRYQNVL-V----SEMH--SKNKPLAEWKDALQKLRS--SAGKLDALVYSSIE 155 (629)
Q Consensus 87 ~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v~-~----~~~~--l~~~~~~~w~~~~~~~~~--~~~~~~~~i~~~l~ 155 (629)
+.. +..+.|...+-.....+++|.+|.+..-. . +|.. +...+..++...+..... ...-.++.+..+.+
T Consensus 640 D~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~ 719 (846)
T PRK04132 640 DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILY 719 (846)
T ss_pred ccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 876 35566666654434455666665554433 1 1222 445577777766665522 12112344445555
Q ss_pred ccccccCchHHHHHHHhhcccCCCCCCCHHHHH
Q 047700 156 LSYNYLIDQVVKSAFLLCGLLKQPYDAPVMDLL 188 (629)
Q Consensus 156 ~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li 188 (629)
.|-.++.. .-+.+..++..+ ..|+.+.+.
T Consensus 720 ~s~GDlR~--AIn~Lq~~~~~~--~~It~~~V~ 748 (846)
T PRK04132 720 IAEGDMRR--AINILQAAAALD--DKITDENVF 748 (846)
T ss_pred HcCCCHHH--HHHHHHHHHHhc--CCCCHHHHH
Confidence 55444332 223333333333 345555433
No 424
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.08 E-value=0.036 Score=45.18 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=18.2
Q ss_pred CEEEEcCCCCcHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVL 20 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~ 20 (629)
+++|+|..|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 37899999999999999986
No 425
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.07 E-value=0.041 Score=46.92 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=22.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+|.+.|.-|+||||+++.+......
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 5789999999999999999988653
No 426
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=94.06 E-value=0.22 Score=51.89 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=48.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCc-------ccCCCHHH------HH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS-TANVEKIQDEIAEQLGLE-------LCKGTESE------RA 67 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~------~~ 67 (629)
++|.|..|+|||||++.+..... -+..+.+.+.+ ...+.++.+........+ ........ ..
T Consensus 148 ~~I~G~sG~GKStLl~~I~~~~~----~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~~a 223 (422)
T TIGR02546 148 IGIFAGAGVGKSTLLGMIARGAS----ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTA 223 (422)
T ss_pred EEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHHHH
Confidence 68999999999999999988654 33444444444 345555555444332111 11111111 12
Q ss_pred HHHHHHH--cCCcEEEEEcCCC
Q 047700 68 RTLFDQL--WKEKILIILDDIW 87 (629)
Q Consensus 68 ~~l~~~l--~~k~~LlVlDdv~ 87 (629)
..+.+++ +++++|+++|++-
T Consensus 224 ~~~AE~f~~~g~~Vl~~~Dslt 245 (422)
T TIGR02546 224 TAIAEYFRDQGKRVLLMMDSLT 245 (422)
T ss_pred HHHHHHHHHCCCcEEEEEeCch
Confidence 2344444 3899999999994
No 427
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.05 E-value=0.14 Score=49.34 Aligned_cols=105 Identities=20% Similarity=0.159 Sum_probs=61.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEE-EEEeCCCcCHHHHHHHH--HHHhCCcccCCCHHHHHHHHHHHH--cC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVV-FVLKSSTANVEKIQDEI--AEQLGLELCKGTESERARTLFDQL--WK 76 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~~i--~~~l~~~~~~~~~~~~~~~l~~~l--~~ 76 (629)
.-.+|+.|.|||+-|.+++...--.+.|.+++ =.|+|......-+-.++ +.++..... ... ..
T Consensus 60 ~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~------------~~~~~~~ 127 (346)
T KOG0989|consen 60 YLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLK------------RSDGYPC 127 (346)
T ss_pred EEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccc------------cccCCCC
Confidence 45899999999999999888876666786654 45666543322111111 111100000 000 02
Q ss_pred Cc-EEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccccc
Q 047700 77 EK-ILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 77 k~-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
++ -.+|||+++.. +.|..+.....+....++.++-|-.-...
T Consensus 128 ~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsri 172 (346)
T KOG0989|consen 128 PPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRI 172 (346)
T ss_pred CcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhC
Confidence 33 46779999866 67988887776666666665555444433
No 428
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.03 E-value=0.04 Score=50.06 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+++|+|..|+||||+++.+......
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5789999999999999999987653
No 429
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.02 E-value=0.087 Score=52.49 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=30.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQ 47 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 47 (629)
++-+.|.||+||||+|.+..-....++ ..+.-|......++.+++
T Consensus 3 ~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 3 ILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHH
T ss_pred EEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHh
Confidence 467899999999999988887766553 335555555444444443
No 430
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.01 E-value=0.24 Score=46.53 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998764
No 431
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.98 E-value=0.044 Score=53.63 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
||||.|..|+||||+|+.+..-..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC
Confidence 699999999999999999987654
No 432
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.97 E-value=0.042 Score=50.47 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
|+.|.|..|.||||+.+.+.-.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 6789999999999999999843
No 433
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=93.97 E-value=0.057 Score=54.95 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
||||.|..|+|||||++.+..-.+.
T Consensus 214 IIGIsG~qGSGKSTLa~~L~~lL~~ 238 (460)
T PLN03046 214 VIGFSAPQGCGKTTLVFALDYLFRV 238 (460)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999765544
No 434
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=93.96 E-value=0.086 Score=52.12 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=27.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSST 40 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 40 (629)
+|+|+|.||+||||+|-.+..-....++ .+.=|+....
T Consensus 3 ~i~~~gKGGVGKTT~a~nLA~~La~~G~--rVLliD~Dpq 40 (279)
T PRK13230 3 KFCFYGKGGIGKSTTVCNIAAALAESGK--KVLVVGCDPK 40 (279)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhCCC--EEEEEeeCCc
Confidence 4789999999999999998887765432 3445554333
No 435
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.96 E-value=0.039 Score=50.96 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLF 21 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~ 21 (629)
+|||+|+.|+||||.|+.+-+
T Consensus 4 iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 4 IIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 689999999999999999755
No 436
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.95 E-value=0.042 Score=28.24 Aligned_cols=16 Identities=56% Similarity=0.727 Sum_probs=7.7
Q ss_pred CccEEEecCCcccccc
Q 047700 301 KLRGLALSKMQLLSLP 316 (629)
Q Consensus 301 ~L~~L~l~~~~~~~lp 316 (629)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666665554
No 437
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.94 E-value=0.065 Score=44.81 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=26.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS 39 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 39 (629)
|.+.|.||+||||+|..+......+ -..+.-|+...
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~--g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK--GKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCc
Confidence 6899999999999999998887653 22344555433
No 438
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.93 E-value=0.25 Score=54.93 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=52.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCccc------CCCHHHHHHHHHHHHc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELC------KGTESERARTLFDQLW 75 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~l~ 75 (629)
+-|+|..|+||||||..++-..... =..++||+....++.. .+++++.+.. ....+.....+.+.++
T Consensus 63 teI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 63 IEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 4599999999999997766554433 3567899988877742 5666665421 1233344445555554
Q ss_pred -CCcEEEEEcCCC
Q 047700 76 -KEKILIILDDIW 87 (629)
Q Consensus 76 -~k~~LlVlDdv~ 87 (629)
++--+||+|.+.
T Consensus 136 ~~~~~LVVIDSI~ 148 (790)
T PRK09519 136 SGALDIVVIDSVA 148 (790)
T ss_pred cCCCeEEEEcchh
Confidence 567789999985
No 439
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.92 E-value=0.044 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|.|.|.+|+||||+|+.+..+.
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999998874
No 440
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=93.91 E-value=0.045 Score=49.50 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=21.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
||+|.|..|+||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998764
No 441
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.88 E-value=0.035 Score=48.13 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+++|+|..|+|||||.+.+.....
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEEEEccCCCccccceeeeccccc
Confidence 479999999999999999987654
No 442
>PRK14530 adenylate kinase; Provisional
Probab=93.88 E-value=0.049 Score=51.49 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=21.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
.|.|+|+.|+||||+|+.+.....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999987753
No 443
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.83 E-value=0.19 Score=57.54 Aligned_cols=74 Identities=19% Similarity=0.405 Sum_probs=41.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcC---CC-CeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHc-C
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEK---LF-DQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLW-K 76 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~---~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~ 76 (629)
+.++|.+|+|||++|+.++....... .. ...+|. + |+..+.. +....+ ..++....+.+.++ .
T Consensus 203 ~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a------g~~~~g-e~e~rl~~i~~~~~~~ 270 (821)
T CHL00095 203 PILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA------GTKYRG-EFEERLKRIFDEIQEN 270 (821)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc------cCCCcc-HHHHHHHHHHHHHHhc
Confidence 45899999999999999998864321 11 234442 1 2222211 111111 12233344444443 5
Q ss_pred CcEEEEEcCCC
Q 047700 77 EKILIILDDIW 87 (629)
Q Consensus 77 k~~LlVlDdv~ 87 (629)
++.+|++|+++
T Consensus 271 ~~~ILfiDEih 281 (821)
T CHL00095 271 NNIILVIDEVH 281 (821)
T ss_pred CCeEEEEecHH
Confidence 68999999995
No 444
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.80 E-value=0.056 Score=50.95 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=22.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
||+|.|.||+||||++..+..-....
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~ 27 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEM 27 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHC
Confidence 58899999999999998888877654
No 445
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.80 E-value=0.14 Score=46.05 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=45.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCC----CHHHHHHHHHHHHcC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKG----TESERARTLFDQLWK 76 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~l~~~l~~ 76 (629)
++.|.|..|+||||+|..+...... .++++.-.+.+| .++.+.|..+........ ...++...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 4789999999999999999766321 234454444444 356666655543322222 112233344333332
Q ss_pred CcEEEEEcCC
Q 047700 77 EKILIILDDI 86 (629)
Q Consensus 77 k~~LlVlDdv 86 (629)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 336888887
No 446
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.80 E-value=0.045 Score=48.17 Aligned_cols=20 Identities=35% Similarity=0.595 Sum_probs=18.5
Q ss_pred CEEEEcCCCCcHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVL 20 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~ 20 (629)
.|+|.|.+|+||||+|+.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 47899999999999999987
No 447
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.79 E-value=0.33 Score=47.23 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=27.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS 39 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 39 (629)
++-|.|.+|+|||++|.++......+ =..+++++..+
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 46799999999999998876665433 35677887754
No 448
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.79 E-value=0.14 Score=56.69 Aligned_cols=24 Identities=38% Similarity=0.372 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
|.++|..|.|||++|+.+.+....
T Consensus 188 ill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 188 VLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 578999999999999999887654
No 449
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.78 E-value=0.054 Score=48.12 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
|.++||-|+||||+.+++.+.....
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~L~~~ 29 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKALNLP 29 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHHcCCC
Confidence 6789999999999999999887755
No 450
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.77 E-value=0.075 Score=47.22 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=23.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
+++|+|..|+|||||+.++......+
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999887654
No 451
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.76 E-value=0.31 Score=46.07 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=55.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCc----ccCCCHHHHHHHHHHHHc-
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLE----LCKGTESERARTLFDQLW- 75 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~----~~~~~~~~~~~~l~~~l~- 75 (629)
++.|.|..|.||||+.+.+.-..-.. +--..+|-. . .. -.....|+-+++.. .+...-.....++...++
T Consensus 33 ~~~itG~N~~GKStll~~i~~~~~la-~~G~~v~a~--~-~~-~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~ 107 (222)
T cd03287 33 CQIITGPNMGGKSSYIRQVALITIMA-QIGSFVPAS--S-AT-LSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSN 107 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH-hCCCEEEcC--c-eE-EeccceEEEEecCccccccccchHHHHHHHHHHHHHh
Confidence 36899999999999999998742111 000111110 0 00 00011111111111 000011112233333343
Q ss_pred -CCcEEEEEcCCCCCcc-------hhhhhhccCCCCCCcEEEEeecccccc
Q 047700 76 -KEKILIILDDIWANID-------LETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 76 -~k~~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
+++-|+++|+...... -..+...+... .++.+|++|.+.+++
T Consensus 108 ~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~ 157 (222)
T cd03287 108 CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLG 157 (222)
T ss_pred CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHH
Confidence 5799999999854421 11223333222 478999999988875
No 452
>COG4240 Predicted kinase [General function prediction only]
Probab=93.76 E-value=0.3 Score=44.98 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=36.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQL 54 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 54 (629)
|+||.|.-|+||||+|..+++....++. +.+.-.....=+-..+-+..++++.
T Consensus 52 i~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~ 104 (300)
T COG4240 52 IVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQV 104 (300)
T ss_pred EEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhc
Confidence 5899999999999999999999988754 4555544333232333333455554
No 453
>PRK05439 pantothenate kinase; Provisional
Probab=93.75 E-value=0.045 Score=54.17 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
||||.|..|+||||+|+.+..-..
T Consensus 88 iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 88 IIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
No 454
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=93.74 E-value=0.17 Score=45.24 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCCCcch---hhhhhccCC-CCCCcEEEEeecccccc
Q 047700 77 EKILIILDDIWANIDL---ETVGILFGG-AHRGCKILLTPRYQNVL 118 (629)
Q Consensus 77 k~~LlVlDdv~~~~~~---~~l~~~~~~-~~~gs~ilvTTR~~~v~ 118 (629)
++-++++|+....-+. ..+...+.. ...|+.+|++|.+.+..
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~ 144 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELA 144 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 6789999999765322 222222211 11267899999988765
No 455
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.079 Score=49.67 Aligned_cols=97 Identities=23% Similarity=0.314 Sum_probs=54.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCC-cEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKE-KIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k-~~L 80 (629)
|-.+|+.|.|||-+|++|.|+...+ ||.|-- .+-+++- ++ .-.....++++.-++| -++
T Consensus 214 vllygppgtgktl~aravanrtdac-------firvig---selvqky----vg------egarmvrelf~martkkaci 273 (435)
T KOG0729|consen 214 VLLYGPPGTGKTLCARAVANRTDAC-------FIRVIG---SELVQKY----VG------EGARMVRELFEMARTKKACI 273 (435)
T ss_pred eEEeCCCCCchhHHHHHHhcccCce-------EEeehh---HHHHHHH----hh------hhHHHHHHHHHHhcccceEE
Confidence 4679999999999999999987754 443311 1111110 00 0122345666666655 577
Q ss_pred EEEcCCCCC-----c-------chh----hhhhccCC--CCCCcEEEEeecccccc
Q 047700 81 IILDDIWAN-----I-------DLE----TVGILFGG--AHRGCKILLTPRYQNVL 118 (629)
Q Consensus 81 lVlDdv~~~-----~-------~~~----~l~~~~~~--~~~gs~ilvTTR~~~v~ 118 (629)
+.+|.++.. + +.+ .+...+.. ....-+|+..|...+.+
T Consensus 274 iffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtl 329 (435)
T KOG0729|consen 274 IFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329 (435)
T ss_pred EEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCc
Confidence 778888533 0 011 12222221 22356889888877776
No 456
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=93.74 E-value=0.041 Score=52.14 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
|+|+|.+|+|||||+.++..+...
T Consensus 8 ivv~G~~g~GKTtl~~~l~~~~~~ 31 (219)
T COG1100 8 IVVLGDGGVGKTTLLNRLVGDEFP 31 (219)
T ss_pred EEEEcCCCccHHHHHHHHhcCcCc
Confidence 789999999999999999887554
No 457
>PF13245 AAA_19: Part of AAA domain
Probab=93.72 E-value=0.18 Score=38.46 Aligned_cols=23 Identities=35% Similarity=0.278 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHH-HHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKT-TLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKT-tLa~~v~~~~~ 24 (629)
+.|.|.+|.||| |+++.+.+-..
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 457999999999 55566655553
No 458
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.13 Score=53.10 Aligned_cols=70 Identities=24% Similarity=0.298 Sum_probs=42.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHH----HHHHHHcCC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERAR----TLFDQLWKE 77 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~----~l~~~l~~k 77 (629)
+-+.|.+|+|||+||..+..... |..+=-|. . ++ .-+.++..... ...+.-++.
T Consensus 541 vLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiS--p----e~------------miG~sEsaKc~~i~k~F~DAYkS~ 598 (744)
T KOG0741|consen 541 VLLEGPPGSGKTALAAKIALSSD----FPFVKIIS--P----ED------------MIGLSESAKCAHIKKIFEDAYKSP 598 (744)
T ss_pred EEEecCCCCChHHHHHHHHhhcC----CCeEEEeC--h----HH------------ccCccHHHHHHHHHHHHHHhhcCc
Confidence 46899999999999999987755 76543331 1 00 01111222222 223333467
Q ss_pred cEEEEEcCCCCCcchh
Q 047700 78 KILIILDDIWANIDLE 93 (629)
Q Consensus 78 ~~LlVlDdv~~~~~~~ 93 (629)
--.+|+||+...-+|-
T Consensus 599 lsiivvDdiErLiD~v 614 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYV 614 (744)
T ss_pred ceEEEEcchhhhhccc
Confidence 7889999997665543
No 459
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=93.69 E-value=0.051 Score=46.79 Aligned_cols=22 Identities=41% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.++|..|+|||||+|++-...
T Consensus 4 imliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6799999999999999997654
No 460
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.14 Score=55.07 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=45.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKIL 80 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~L 80 (629)
++++||++|+|||.|++.|++-...+ | +-+.+.-..|..++-- + ....-+.-+ +.+-+-.+..+.++-+
T Consensus 352 ILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRG----H-RRTYIGamP-GrIiQ~mkka~~~NPv 420 (782)
T COG0466 352 ILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRG----H-RRTYIGAMP-GKIIQGMKKAGVKNPV 420 (782)
T ss_pred EEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhcc----c-cccccccCC-hHHHHHHHHhCCcCCe
Confidence 57899999999999999999887655 3 1123333444444421 0 000111111 1222233334577889
Q ss_pred EEEcCCCCC
Q 047700 81 IILDDIWAN 89 (629)
Q Consensus 81 lVlDdv~~~ 89 (629)
++||.+++.
T Consensus 421 ~LLDEIDKm 429 (782)
T COG0466 421 FLLDEIDKM 429 (782)
T ss_pred EEeechhhc
Confidence 999999865
No 461
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.68 E-value=0.068 Score=48.06 Aligned_cols=24 Identities=50% Similarity=0.648 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
|.|.|..|+|||||++.+.+..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999988753
No 462
>PRK13768 GTPase; Provisional
Probab=93.66 E-value=0.058 Score=52.28 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=25.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLK 37 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v 37 (629)
++.|.|.||+||||+|..+..-...++ ..++.|+.
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g--~~v~~i~~ 38 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG--YDVAIVNL 38 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC--CceEEEEC
Confidence 478999999999999998887766542 33444443
No 463
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.65 E-value=0.12 Score=47.61 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=29.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSST 40 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 40 (629)
++.|.|.+|+|||++|..+......+ =..++|++..++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCC
Confidence 47899999999999999887776533 255778876543
No 464
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=93.64 E-value=0.06 Score=52.83 Aligned_cols=26 Identities=38% Similarity=0.659 Sum_probs=22.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
||+|.|.||+||||+|..+..-...+
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~ 27 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKR 27 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHC
Confidence 68899999999999998888776643
No 465
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.64 E-value=0.036 Score=51.79 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
+++|+|..|.||||+.+.+...
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHH
Confidence 4789999999999999999844
No 466
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.62 E-value=0.048 Score=54.80 Aligned_cols=22 Identities=27% Similarity=0.179 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+-++|+.|+||||+|..+..-.
T Consensus 24 ~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 24 WLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred EEeECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999987764
No 467
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.62 E-value=0.067 Score=47.19 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
||=+.|.+|+||||||.+++......
T Consensus 25 viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 25 VIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 35578999999999999999998765
No 468
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.61 E-value=0.045 Score=45.91 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
|-|+|..|+||||+|+.+..-....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc
Confidence 5689999999999999999886643
No 469
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=93.60 E-value=0.06 Score=52.87 Aligned_cols=25 Identities=40% Similarity=0.678 Sum_probs=21.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+|+|.|.||+||||+|..+..-...
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~ 26 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAK 26 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHh
Confidence 5788999999999999888776553
No 470
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.13 Score=54.16 Aligned_cols=98 Identities=19% Similarity=0.275 Sum_probs=62.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHc-CCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLW-KEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~k~~L 80 (629)
|-+||+.|.|||-||++|.|..... |+.|-- .+++. .+.++ .+..+.+++++-+ +..+.
T Consensus 548 vLL~GPPGCGKTLlAKAVANEag~N-------FisVKG----PELlN--------kYVGE-SErAVR~vFqRAR~saPCV 607 (802)
T KOG0733|consen 548 VLLCGPPGCGKTLLAKAVANEAGAN-------FISVKG----PELLN--------KYVGE-SERAVRQVFQRARASAPCV 607 (802)
T ss_pred eEEeCCCCccHHHHHHHHhhhccCc-------eEeecC----HHHHH--------HHhhh-HHHHHHHHHHHhhcCCCeE
Confidence 4689999999999999999998866 454422 12211 11111 2334567777777 78999
Q ss_pred EEEcCCCCC-------c------chhhhhhccCC--CCCCcEEEEeeccccccc
Q 047700 81 IILDDIWAN-------I------DLETVGILFGG--AHRGCKILLTPRYQNVLV 119 (629)
Q Consensus 81 lVlDdv~~~-------~------~~~~l~~~~~~--~~~gs~ilvTTR~~~v~~ 119 (629)
|.+|.++.. . ..+++...+.. ...|--||-.|-..++..
T Consensus 608 IFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 608 IFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID 661 (802)
T ss_pred EEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence 999999743 1 14456666643 335666666666666653
No 471
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=93.58 E-value=0.25 Score=52.84 Aligned_cols=81 Identities=22% Similarity=0.263 Sum_probs=54.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcC-HHHHHHHHHHHh----CCc----------ccCCCHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTAN-VEKIQDEIAEQL----GLE----------LCKGTESER 66 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l----~~~----------~~~~~~~~~ 66 (629)
++|-|..|+|||+|++++.+... -|.++++-+.+.-+ +.++++++-+.. +.. ..++.....
T Consensus 230 ~~Ipg~~G~GKTvl~~~iak~a~----adivVyvg~GERg~E~~e~l~ef~~l~dp~~g~~~m~RTvlVanTSn~Pv~aR 305 (586)
T PRK04192 230 AAIPGPFGSGKTVTQHQLAKWAD----ADIVIYVGCGERGNEMTEVLEEFPELIDPKTGRPLMERTVLIANTSNMPVAAR 305 (586)
T ss_pred EEEecCCCCCHHHHHHHHHhcCC----CCEEEEEEcCcChHHHHHHHHHHHhhcccccccccceeEEEEEECCCCCHHHH
Confidence 58999999999999999987754 57899998888654 677777764422 110 122222221
Q ss_pred ------HHHHHHHHc--CCcEEEEEcCC
Q 047700 67 ------ARTLFDQLW--KEKILIILDDI 86 (629)
Q Consensus 67 ------~~~l~~~l~--~k~~LlVlDdv 86 (629)
.-.+.++.+ |+.++++.|+.
T Consensus 306 ~~s~ytgiTiAEYfRd~G~~Vllm~DSt 333 (586)
T PRK04192 306 EASIYTGITIAEYYRDMGYDVLLMADST 333 (586)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEecCh
Confidence 224444443 99999999999
No 472
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=93.58 E-value=0.072 Score=53.49 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=27.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh-----cCCCCeEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK-----EKLFDQVVF 34 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~-----~~~F~~~~w 34 (629)
++.++|+.|+||||||+++.+.... ++.|...-|
T Consensus 80 il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 80 ILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 4789999999999999999988754 345656666
No 473
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.57 E-value=0.042 Score=28.24 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=5.8
Q ss_pred ccceeeccCCCCccCc
Q 047700 346 KLENLSLVDSDIEWLP 361 (629)
Q Consensus 346 ~L~~L~l~~~~l~~lp 361 (629)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444555555444443
No 474
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.56 E-value=0.05 Score=49.69 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=24.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||++.+...... ..+.+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~ 59 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEEP---DSGSILI 59 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---CceEEEE
Confidence 4789999999999999999865432 3455544
No 475
>PLN02348 phosphoribulokinase
Probab=93.55 E-value=0.051 Score=55.10 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=22.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
||||.|.+|+||||+|+.+.+...
T Consensus 51 IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 51 VIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999998864
No 476
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.55 E-value=0.061 Score=51.20 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
+-++|++|.||||||.-|.+...+.
T Consensus 55 vLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 55 VLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred EEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 4689999999999999999997765
No 477
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.53 E-value=0.19 Score=47.88 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=25.9
Q ss_pred CEEEEcCCCCcHHHHHHHHH-HHhhhcCCCCeEEEEEeCCCc
Q 047700 1 MIGVYGIGGIGKTTLMHEVL-FEAKKEKLFDQVVFVLKSSTA 41 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~-~~~~~~~~F~~~~wv~vs~~~ 41 (629)
++.|.|..|+|||++|..+. +-.+.. =+.++||...++.
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSFEEPP 60 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEESSS-H
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEecCCH
Confidence 46799999999999997655 444431 2456788775543
No 478
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=93.53 E-value=0.063 Score=52.87 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=21.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
||+|+|.||+||||+|..+..-...
T Consensus 3 ~iav~gKGGVGKTT~a~nLA~~La~ 27 (273)
T PRK13232 3 QIAIYGKGGIGKSTTTQNLTAALST 27 (273)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHh
Confidence 5788899999999999888777654
No 479
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.51 E-value=0.14 Score=57.94 Aligned_cols=67 Identities=22% Similarity=0.246 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.++|..|+|||+||+++++..... ++.++ ...+...............+.........+|
T Consensus 215 iLL~GppGtGKT~laraia~~~~~~-------~i~i~------------~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il 275 (733)
T TIGR01243 215 VLLYGPPGTGKTLLAKAVANEAGAY-------FISIN------------GPEIMSKYYGESEERLREIFKEAEENAPSII 275 (733)
T ss_pred EEEECCCCCChHHHHHHHHHHhCCe-------EEEEe------------cHHHhcccccHHHHHHHHHHHHHHhcCCcEE
Q ss_pred EEcCCC
Q 047700 82 ILDDIW 87 (629)
Q Consensus 82 VlDdv~ 87 (629)
+||+++
T Consensus 276 ~iDEid 281 (733)
T TIGR01243 276 FIDEID 281 (733)
T ss_pred Eeehhh
No 480
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.50 E-value=0.062 Score=48.23 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~ 22 (629)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 799999999999999999876
No 481
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.50 E-value=0.05 Score=51.27 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+++|+|..|+|||||++.+.....
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999987644
No 482
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.45 E-value=0.051 Score=51.51 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=25.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||++.+..-... ..+.+++
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~ 63 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDRP---TSGEVRV 63 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcCC---CceeEEE
Confidence 4799999999999999999876543 3455554
No 483
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.43 E-value=0.17 Score=51.46 Aligned_cols=109 Identities=17% Similarity=0.110 Sum_probs=59.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS-TANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKI 79 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 79 (629)
+|.|.|..|+||||+++.+.+.... +...+++.-... .+..... ..+..+ .+.+ .....-.+.++..|+...=
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~--~~~~~i~tiEdp~E~~~~~~-~~~i~q--~evg-~~~~~~~~~l~~~lr~~pd 197 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINK--NAAGHIITIEDPIEYVHRNK-RSLINQ--REVG-LDTLSFANALRAALREDPD 197 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCc--CCCCEEEEEcCChhhhccCc-cceEEc--cccC-CCCcCHHHHHHHhhccCCC
Confidence 3789999999999999998876542 244555542211 1110000 000000 0111 1112234557777888999
Q ss_pred EEEEcCCCCCcchhhhhhccCCCCCCcEEEEeecccccc
Q 047700 80 LIILDDIWANIDLETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 80 LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
.+++|.+.+.+.+...... ...|-.|+.|+...+..
T Consensus 198 ~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 198 VILIGEMRDLETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred EEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 9999999876655443222 23455566665554443
No 484
>PRK06761 hypothetical protein; Provisional
Probab=93.41 E-value=0.081 Score=51.57 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=26.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+|.|.|..|+||||+|+.+++..... .++..++.
T Consensus 5 lIvI~G~~GsGKTTla~~L~~~L~~~-g~~v~~~~ 38 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLNDILSQN-GIEVELYL 38 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcC-ceEEEEEe
Confidence 47899999999999999999887643 34444433
No 485
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.39 E-value=0.082 Score=51.57 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=24.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEK 27 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~ 27 (629)
+|+|+|.+|+|||||+..+....+.++
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 589999999999999999999988775
No 486
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.39 E-value=0.053 Score=50.09 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+++|+|..|+|||||++.+.....
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 479999999999999999987644
No 487
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.38 E-value=0.21 Score=56.57 Aligned_cols=74 Identities=16% Similarity=0.339 Sum_probs=41.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcC---CC-CeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHc-C
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEK---LF-DQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLW-K 76 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~---~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~ 76 (629)
+.++|.+|+|||++|+.+++...... .+ ...+|. + +...+.. +.... ...++....+.+.++ .
T Consensus 206 ~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a------~~~~~-g~~e~~l~~i~~~~~~~ 273 (731)
T TIGR02639 206 PLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA------GTKYR-GDFEERLKAVVSEIEKE 273 (731)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh------hcccc-chHHHHHHHHHHHHhcc
Confidence 45899999999999999999874321 12 333432 1 2211111 00011 112233444444443 4
Q ss_pred CcEEEEEcCCC
Q 047700 77 EKILIILDDIW 87 (629)
Q Consensus 77 k~~LlVlDdv~ 87 (629)
++.+|++|+++
T Consensus 274 ~~~ILfiDEih 284 (731)
T TIGR02639 274 PNAILFIDEIH 284 (731)
T ss_pred CCeEEEEecHH
Confidence 67899999997
No 488
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.38 E-value=0.061 Score=50.68 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=25.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||++.++.-... ..+.+++
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~ 58 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPP---SSGTIRI 58 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCC---CccEEEE
Confidence 5899999999999999999876442 4566665
No 489
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.37 E-value=0.26 Score=51.29 Aligned_cols=116 Identities=17% Similarity=0.251 Sum_probs=67.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc-CCCCeEEEE-------E------eCC-----------CcCHHHHHHHHHHHhCC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE-KLFDQVVFV-------L------KSS-----------TANVEKIQDEIAEQLGL 56 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~wv-------~------vs~-----------~~~~~~~~~~i~~~l~~ 56 (629)
|++||+.|+|||||.+.+|.+.... ++-...... + ... .-...+..+.|+.+.+.
T Consensus 419 vAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgL 498 (614)
T KOG0927|consen 419 VALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGL 498 (614)
T ss_pred eeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCC
Confidence 6899999999999999999985432 111110000 0 000 01345566677777765
Q ss_pred ccc-------CCCHHHHHHHHHHHHc-CCcEEEEEcCCCCC---cchhhhhhccCCCCCCcEEEEeeccccccc
Q 047700 57 ELC-------KGTESERARTLFDQLW-KEKILIILDDIWAN---IDLETVGILFGGAHRGCKILLTPRYQNVLV 119 (629)
Q Consensus 57 ~~~-------~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~ 119 (629)
..+ ..++.+....++-++. ..+-+||||.--+- .--+.+..++. ...|. ||++|.+..+..
T Consensus 499 tgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiN-e~~Gg-vv~vSHDfrlI~ 570 (614)
T KOG0927|consen 499 TGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAIN-EFPGG-VVLVSHDFRLIS 570 (614)
T ss_pred CccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHh-ccCCc-eeeeechhhHHH
Confidence 421 2233334455555555 77899999987554 23445555553 33343 667777776654
No 490
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.37 E-value=0.18 Score=47.10 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
+|+|.|+.|+||||+|+.+.+.....
T Consensus 5 ~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 5 FITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999886543
No 491
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.37 E-value=0.06 Score=51.07 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=25.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||++.+...... ..+.+++
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~ 59 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLLKP---TSGRATV 59 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---CceEEEE
Confidence 4799999999999999999876432 5666665
No 492
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.37 E-value=0.23 Score=56.99 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+.++|.+|+|||+||+.+.....
T Consensus 202 ~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 202 PVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred eEEECCCCCCHHHHHHHHHHHhh
Confidence 45899999999999999998864
No 493
>PRK14527 adenylate kinase; Provisional
Probab=93.35 E-value=0.064 Score=49.61 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|.|+|.+|+||||+|+.+.+...
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987754
No 494
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.34 E-value=0.81 Score=44.53 Aligned_cols=86 Identities=21% Similarity=0.324 Sum_probs=46.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCccc-CCCHHHHHHHHHHHHc--C
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGLELC-KGTESERARTLFDQLW--K 76 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~--~ 76 (629)
+++++|.+|+||||+++.+......++ ..+.+++..... ...+-++.-++.++.... ..+.....+.+ +.++ +
T Consensus 77 ~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l-~~l~~~~ 153 (270)
T PRK06731 77 TIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL-TYFKEEA 153 (270)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHH-HHHHhcC
Confidence 478999999999999999877754332 345566554221 222222333333433221 12333333322 3333 3
Q ss_pred CcEEEEEcCCCCC
Q 047700 77 EKILIILDDIWAN 89 (629)
Q Consensus 77 k~~LlVlDdv~~~ 89 (629)
+.-++++|.....
T Consensus 154 ~~D~ViIDt~Gr~ 166 (270)
T PRK06731 154 RVDYILIDTAGKN 166 (270)
T ss_pred CCCEEEEECCCCC
Confidence 4577788887654
No 495
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.33 E-value=0.071 Score=48.27 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|.|+|+.|+||||+|+.+.+...
T Consensus 5 i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 5 LFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999998764
No 496
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.32 E-value=0.26 Score=50.46 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=32.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA 41 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 41 (629)
|+.|.|.+|+|||.||-.++.+..........++++.+...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l 43 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPL 43 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchH
Confidence 57899999999999999999998322346667788776654
No 497
>PRK13948 shikimate kinase; Provisional
Probab=93.31 E-value=0.073 Score=48.50 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|.++|+.|+||||+++.+.+...
T Consensus 13 I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 13 VALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999988864
No 498
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.31 E-value=0.22 Score=49.32 Aligned_cols=134 Identities=15% Similarity=0.191 Sum_probs=66.3
Q ss_pred CEEEEcCCCCcHHHHHHHHH-HHhhhcCCCCeEE-E---EEeCCCc---------CHHHHHHHHHHHhCC--cccCCCHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVL-FEAKKEKLFDQVV-F---VLKSSTA---------NVEKIQDEIAEQLGL--ELCKGTES 64 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~-~~~~~~~~F~~~~-w---v~vs~~~---------~~~~~~~~i~~~l~~--~~~~~~~~ 64 (629)
+|.+.|.+|.|||.||-+.. .....++.|..++ . |.+.+.- .+.--++.|.+.+.. ...+.. +
T Consensus 247 lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~-~ 325 (436)
T COG1875 247 LVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPG-D 325 (436)
T ss_pred eEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHHHHHhHHHHHhcccccc-h
Confidence 47899999999999985443 2223333454433 3 2344331 111123344333311 011111 1
Q ss_pred HHHHHH----------HHHHcCC---cEEEEEcCCCCCcchhhhhhccCCCCCCcEEEEeecccccccccccCCCCChHH
Q 047700 65 ERARTL----------FDQLWKE---KILIILDDIWANIDLETVGILFGGAHRGCKILLTPRYQNVLVSEMHSKNKPLAE 131 (629)
Q Consensus 65 ~~~~~l----------~~~l~~k---~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~~~l~~~~~~~ 131 (629)
+..+.+ ..+++|+ +-++++|..++-.- .++...+-..+.||||+.|---.++...+. +.+...
T Consensus 326 ~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR~G~GsKIVl~gd~aQiD~~yl---~~~snG 401 (436)
T COG1875 326 RALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTRAGEGSKIVLTGDPAQIDTPYL---DETSNG 401 (436)
T ss_pred HHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHhccCCCEEEEcCCHHHcCCccc---cCCCcc
Confidence 212212 1233443 46899999976521 233344445788999999876554432111 333444
Q ss_pred HHHHHHHH
Q 047700 132 WKDALQKL 139 (629)
Q Consensus 132 w~~~~~~~ 139 (629)
...+.+++
T Consensus 402 Ltyvverf 409 (436)
T COG1875 402 LTYVVEKF 409 (436)
T ss_pred HHHHHHHh
Confidence 44455555
No 499
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.29 E-value=0.094 Score=52.42 Aligned_cols=106 Identities=7% Similarity=0.016 Sum_probs=54.5
Q ss_pred EEEcCCCCcHHHHHHHHHHHhhhcC--------CCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHH
Q 047700 3 GVYGIGGIGKTTLMHEVLFEAKKEK--------LFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQL 74 (629)
Q Consensus 3 ~i~G~gG~GKTtLa~~v~~~~~~~~--------~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 74 (629)
-++|+.|+||+++|..+..-.--.. ..+..-++..+...|+..+. ...+..-..+.++.+.+.+
T Consensus 28 Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--------p~~~~~I~id~iR~l~~~~ 99 (325)
T PRK06871 28 LFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILE--------PIDNKDIGVDQVREINEKV 99 (325)
T ss_pred EeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEc--------cccCCCCCHHHHHHHHHHH
Confidence 4799999999999999876643211 11101111112222211110 0000011122233444444
Q ss_pred c-----CCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccc
Q 047700 75 W-----KEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQN 116 (629)
Q Consensus 75 ~-----~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~ 116 (629)
. |++-.+|+|+++.. ...+.+...+-.-..++.+|++|.+.+
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~ 148 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSA 148 (325)
T ss_pred hhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChH
Confidence 3 66778889999866 345566666644455666666666553
No 500
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.29 E-value=0.055 Score=51.17 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=25.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||++.+..-... ..+.+++
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~ 62 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEKP---TRGKIRF 62 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---CceEEEE
Confidence 4799999999999999999876442 4566655
Done!