Query 047700
Match_columns 629
No_of_seqs 305 out of 3279
Neff 10.0
Searched_HMMs 29240
Date Tue Mar 26 00:36:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047700.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047700hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.9E-35 1.3E-39 317.3 16.7 234 1-250 154-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 6.1E-30 2.1E-34 280.0 11.7 224 1-243 152-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 1.1E-26 3.8E-31 277.8 16.9 228 1-249 149-452 (1249)
4 4fmz_A Internalin; leucine ric 99.9 4E-24 1.4E-28 218.6 19.7 287 268-605 42-339 (347)
5 1z6t_A APAF-1, apoptotic prote 99.9 4E-24 1.4E-28 234.7 15.0 224 1-246 149-449 (591)
6 3o6n_A APL1; leucine-rich repe 99.9 2E-23 6.8E-28 217.0 17.5 292 268-611 43-350 (390)
7 3rgz_A Protein brassinosteroid 99.9 4.2E-23 1.4E-27 233.1 18.7 329 255-605 185-544 (768)
8 2id5_A Lingo-1, leucine rich r 99.9 9.7E-23 3.3E-27 217.8 20.4 297 267-611 29-331 (477)
9 4eco_A Uncharacterized protein 99.9 1.8E-23 6.1E-28 230.8 14.8 320 267-611 203-598 (636)
10 1o6v_A Internalin A; bacterial 99.9 2.4E-22 8.2E-27 213.9 21.8 301 264-605 62-381 (466)
11 4ecn_A Leucine-rich repeat pro 99.9 6.2E-23 2.1E-27 230.5 17.7 319 267-611 445-838 (876)
12 4fmz_A Internalin; leucine ric 99.9 4.9E-22 1.7E-26 203.1 22.9 282 256-586 52-344 (347)
13 3v47_A TOLL-like receptor 5B a 99.9 2.6E-22 8.9E-27 213.2 19.4 326 259-610 21-405 (455)
14 3oja_B Anopheles plasmodium-re 99.9 1.1E-22 3.7E-27 223.2 16.9 292 268-611 49-356 (597)
15 2z63_A TOLL-like receptor 4, v 99.9 3.4E-22 1.1E-26 218.8 20.5 106 299-405 75-189 (570)
16 4eco_A Uncharacterized protein 99.9 8E-23 2.7E-27 225.6 15.2 110 299-410 205-347 (636)
17 2z7x_B TOLL-like receptor 1, v 99.9 5.7E-22 2E-26 214.3 20.5 138 255-405 7-150 (520)
18 3t6q_A CD180 antigen; protein- 99.9 7.9E-22 2.7E-26 217.4 21.6 108 299-407 80-193 (606)
19 1o6v_A Internalin A; bacterial 99.9 6.2E-22 2.1E-26 210.6 20.1 303 267-611 43-364 (466)
20 3o6n_A APL1; leucine-rich repe 99.9 4E-22 1.4E-26 207.2 18.0 272 299-611 44-329 (390)
21 3vq2_A TLR4, TOLL-like recepto 99.9 8.5E-22 2.9E-26 217.1 21.7 131 268-406 30-166 (606)
22 2ft3_A Biglycan; proteoglycan, 99.9 5.8E-22 2E-26 201.1 18.7 281 271-605 34-326 (332)
23 3t6q_A CD180 antigen; protein- 99.9 3.9E-22 1.3E-26 219.8 18.4 320 267-610 30-435 (606)
24 3rgz_A Protein brassinosteroid 99.9 2.1E-22 7.1E-27 227.5 14.0 107 299-406 342-455 (768)
25 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-21 5.6E-26 205.9 19.6 118 269-403 41-158 (457)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-21 4.1E-26 213.6 18.7 140 253-405 36-181 (562)
27 2id5_A Lingo-1, leucine rich r 99.9 1.4E-21 4.9E-26 208.8 18.7 288 253-586 37-331 (477)
28 1xku_A Decorin; proteoglycan, 99.9 6.6E-21 2.3E-25 193.2 22.6 284 271-605 32-325 (330)
29 3v47_A TOLL-like receptor 5B a 99.9 2E-21 6.8E-26 206.4 19.0 302 273-610 13-381 (455)
30 3vq2_A TLR4, TOLL-like recepto 99.9 1E-21 3.6E-26 216.4 17.4 119 267-393 53-177 (606)
31 2z81_A CD282 antigen, TOLL-lik 99.9 1.6E-21 5.4E-26 212.3 18.1 329 259-605 16-416 (549)
32 4ecn_A Leucine-rich repeat pro 99.9 5.9E-22 2E-26 222.6 14.9 119 280-406 435-586 (876)
33 4fcg_A Uncharacterized protein 99.9 2.3E-21 8E-26 195.8 16.6 106 299-405 80-195 (328)
34 3oja_B Anopheles plasmodium-re 99.9 2.7E-21 9.2E-26 212.1 18.0 275 296-611 47-335 (597)
35 1ziw_A TOLL-like receptor 3; i 99.9 1E-20 3.5E-25 211.4 19.7 316 257-605 13-359 (680)
36 3j0a_A TOLL-like receptor 5; m 99.9 3.3E-20 1.1E-24 211.7 24.2 146 253-407 9-162 (844)
37 3bz5_A Internalin-J, INLJ; leu 99.8 2.3E-20 7.7E-25 197.1 20.4 175 255-466 49-223 (457)
38 3g06_A SSPH2 (leucine-rich rep 99.8 5.1E-20 1.7E-24 200.3 20.8 241 270-592 61-301 (622)
39 1ogq_A PGIP-2, polygalacturona 99.8 1.3E-20 4.4E-25 189.2 14.5 245 270-563 50-305 (313)
40 2z81_A CD282 antigen, TOLL-lik 99.8 1.3E-20 4.5E-25 205.1 15.4 106 267-379 47-159 (549)
41 4fcg_A Uncharacterized protein 99.8 3.9E-20 1.3E-24 186.8 17.6 219 269-557 80-309 (328)
42 1ziw_A TOLL-like receptor 3; i 99.8 9.9E-20 3.4E-24 203.4 22.6 147 253-407 30-185 (680)
43 2ft3_A Biglycan; proteoglycan, 99.8 7E-20 2.4E-24 185.7 19.0 272 268-587 52-332 (332)
44 2z63_A TOLL-like receptor 4, v 99.8 2.1E-20 7.3E-25 204.4 16.0 142 453-611 371-529 (570)
45 3j0a_A TOLL-like receptor 5; m 99.8 4.4E-20 1.5E-24 210.6 18.9 150 273-443 7-162 (844)
46 1xku_A Decorin; proteoglycan, 99.8 2.5E-19 8.4E-24 181.6 21.4 273 268-585 50-329 (330)
47 1ogq_A PGIP-2, polygalacturona 99.8 1.4E-20 4.8E-25 188.9 11.6 246 300-590 50-306 (313)
48 2z7x_B TOLL-like receptor 1, v 99.8 1.8E-19 6.3E-24 194.6 19.9 143 452-611 321-479 (520)
49 4g8a_A TOLL-like receptor 4; l 99.8 1.3E-19 4.4E-24 200.9 18.7 139 259-407 42-187 (635)
50 1ozn_A Reticulon 4 receptor; N 99.8 4.3E-19 1.5E-23 175.8 17.9 220 273-531 14-238 (285)
51 3zyi_A Leucine-rich repeat-con 99.8 5.2E-19 1.8E-23 187.3 19.3 240 273-559 57-300 (452)
52 3g06_A SSPH2 (leucine-rich rep 99.8 4.5E-19 1.5E-23 192.9 18.3 255 271-611 41-295 (622)
53 2z80_A TOLL-like receptor 2, v 99.8 4.1E-19 1.4E-23 181.7 17.1 265 275-586 36-312 (353)
54 1jl5_A Outer protein YOPM; leu 99.8 1.2E-18 4E-23 183.9 20.8 139 300-466 131-288 (454)
55 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 8.8E-19 3E-23 191.0 20.4 308 272-611 33-508 (562)
56 2z66_A Variable lymphocyte rec 99.8 3.7E-19 1.3E-23 178.3 16.0 169 273-465 10-185 (306)
57 3zyj_A Leucine-rich repeat-con 99.8 7.7E-19 2.6E-23 185.3 18.6 223 269-529 63-290 (440)
58 1jl5_A Outer protein YOPM; leu 99.8 1.7E-18 5.7E-23 182.7 20.9 290 253-611 76-407 (454)
59 2z80_A TOLL-like receptor 2, v 99.8 5.9E-19 2E-23 180.5 15.8 267 256-562 39-314 (353)
60 3zyi_A Leucine-rich repeat-con 99.8 3.5E-18 1.2E-22 180.9 17.3 233 258-529 64-301 (452)
61 3zyj_A Leucine-rich repeat-con 99.8 4.6E-18 1.6E-22 179.3 18.1 243 271-560 44-290 (440)
62 3o53_A Protein LRIM1, AGAP0063 99.8 6.3E-19 2.1E-23 177.3 10.6 101 299-407 33-134 (317)
63 3o53_A Protein LRIM1, AGAP0063 99.8 3.4E-19 1.1E-23 179.3 7.2 266 269-589 33-300 (317)
64 2z66_A Variable lymphocyte rec 99.8 7.1E-18 2.4E-22 168.9 16.0 235 257-529 16-259 (306)
65 4g8a_A TOLL-like receptor 4; l 99.8 2.1E-17 7.1E-22 183.1 20.1 339 252-611 56-578 (635)
66 3oja_A Leucine-rich immune mol 99.7 6.4E-18 2.2E-22 180.0 13.9 234 299-605 33-268 (487)
67 1ozn_A Reticulon 4 receptor; N 99.7 4E-17 1.4E-21 161.5 18.6 216 256-507 19-240 (285)
68 3oja_A Leucine-rich immune mol 99.7 5.5E-18 1.9E-22 180.5 7.7 241 269-562 33-275 (487)
69 1wwl_A Monocyte differentiatio 99.7 1.7E-18 5.7E-23 173.8 3.4 155 269-442 42-214 (312)
70 2z62_A TOLL-like receptor 4, v 99.7 3.2E-16 1.1E-20 154.2 16.8 216 274-529 11-235 (276)
71 1h6u_A Internalin H; cell adhe 99.7 5.9E-16 2E-20 154.7 18.0 126 268-406 39-164 (308)
72 4ay9_X Follicle-stimulating ho 99.7 2.3E-16 8E-21 160.8 14.9 237 273-557 12-254 (350)
73 1h6u_A Internalin H; cell adhe 99.7 5.6E-16 1.9E-20 154.9 17.1 189 299-529 40-228 (308)
74 1p9a_G Platelet glycoprotein I 99.7 5.6E-16 1.9E-20 153.3 16.9 174 268-465 8-182 (290)
75 2o6q_A Variable lymphocyte rec 99.7 9.1E-16 3.1E-20 150.4 17.9 197 270-529 16-216 (270)
76 2o6q_A Variable lymphocyte rec 99.7 6.5E-16 2.2E-20 151.5 16.7 198 300-560 16-216 (270)
77 3rfs_A Internalin B, repeat mo 99.6 5.5E-16 1.9E-20 152.1 12.4 105 299-405 40-145 (272)
78 2ast_B S-phase kinase-associat 99.6 1.1E-16 3.6E-21 162.6 7.3 129 270-406 47-182 (336)
79 2xwt_C Thyrotropin receptor; s 99.6 8.2E-16 2.8E-20 147.8 13.0 204 282-561 23-238 (239)
80 1z7x_W Ribonuclease inhibitor; 99.6 2E-18 6.9E-23 183.5 -6.0 315 268-611 26-409 (461)
81 2xwt_C Thyrotropin receptor; s 99.6 6.8E-16 2.3E-20 148.4 12.2 174 268-464 29-214 (239)
82 1z7x_W Ribonuclease inhibitor; 99.6 3.5E-17 1.2E-21 173.9 2.0 292 269-587 55-410 (461)
83 2ast_B S-phase kinase-associat 99.6 2.4E-16 8.1E-21 160.0 7.7 127 270-404 70-206 (336)
84 1p9a_G Platelet glycoprotein I 99.6 2.6E-15 8.7E-20 148.6 14.9 196 299-529 9-206 (290)
85 2z62_A TOLL-like receptor 4, v 99.6 4.2E-15 1.4E-19 146.2 16.1 199 268-503 26-235 (276)
86 3ogk_B Coronatine-insensitive 99.6 1E-16 3.4E-21 176.1 4.8 262 299-586 219-524 (592)
87 3rfs_A Internalin B, repeat mo 99.6 4.5E-15 1.6E-19 145.5 16.1 155 267-443 38-195 (272)
88 3ogk_B Coronatine-insensitive 99.6 5.7E-17 2E-21 178.0 1.9 285 299-611 191-524 (592)
89 3m19_A Variable lymphocyte rec 99.6 8.2E-15 2.8E-19 141.9 16.5 171 271-465 15-189 (251)
90 1wwl_A Monocyte differentiatio 99.6 4.8E-15 1.7E-19 148.5 13.8 130 269-406 94-241 (312)
91 2p1m_B Transport inhibitor res 99.6 9.5E-17 3.2E-21 176.3 0.7 127 269-403 104-245 (594)
92 1h6t_A Internalin B; cell adhe 99.6 1.7E-14 5.8E-19 142.8 15.3 168 267-465 43-210 (291)
93 4ezg_A Putative uncharacterize 99.6 1.9E-14 6.4E-19 133.7 12.9 151 267-442 41-194 (197)
94 4ay9_X Follicle-stimulating ho 99.6 1.4E-14 4.9E-19 147.6 13.2 239 303-584 12-255 (350)
95 1m9s_A Internalin B; cell inva 99.6 2E-14 6.9E-19 156.1 14.0 170 267-467 40-209 (605)
96 2o6s_A Variable lymphocyte rec 99.6 3.1E-14 1.1E-18 133.6 13.4 123 274-406 11-137 (208)
97 4ezg_A Putative uncharacterize 99.5 2.2E-14 7.4E-19 133.3 12.1 147 299-466 43-192 (197)
98 3m19_A Variable lymphocyte rec 99.5 7.8E-14 2.7E-18 135.0 15.7 167 256-443 22-193 (251)
99 2v9t_B SLIT homolog 2 protein 99.5 5.9E-14 2E-18 132.7 13.9 149 273-443 14-166 (220)
100 4glp_A Monocyte differentiatio 99.5 7.4E-14 2.5E-18 139.7 15.1 159 299-466 63-235 (310)
101 2ca6_A RAN GTPase-activating p 99.5 1.6E-15 5.5E-20 157.0 2.4 107 299-406 31-172 (386)
102 1h6t_A Internalin B; cell adhe 99.5 1.1E-13 3.7E-18 137.0 15.4 125 299-442 45-169 (291)
103 2v70_A SLIT-2, SLIT homolog 2 99.5 1.1E-13 3.6E-18 130.9 14.2 149 273-443 14-167 (220)
104 1m9s_A Internalin B; cell inva 99.5 2.5E-14 8.6E-19 155.3 10.7 166 269-465 20-185 (605)
105 4glp_A Monocyte differentiatio 99.5 1.7E-14 5.7E-19 144.4 8.2 202 299-529 90-305 (310)
106 3e6j_A Variable lymphocyte rec 99.5 2E-13 6.8E-18 130.0 15.1 148 272-442 21-172 (229)
107 3cvr_A Invasion plasmid antige 99.5 1.4E-13 4.9E-18 147.7 15.2 135 270-442 59-193 (571)
108 2ca6_A RAN GTPase-activating p 99.5 2.7E-15 9.2E-20 155.3 1.3 255 301-587 10-315 (386)
109 2p1m_B Transport inhibitor res 99.5 4.2E-15 1.4E-19 163.2 2.2 39 548-587 480-518 (594)
110 1xeu_A Internalin C; cellular 99.5 2E-13 6.9E-18 132.8 13.8 148 267-442 38-185 (263)
111 1xeu_A Internalin C; cellular 99.5 5.4E-14 1.8E-18 136.9 9.1 167 267-465 16-182 (263)
112 3goz_A Leucine-rich repeat-con 99.5 2.5E-14 8.6E-19 146.5 7.0 106 300-406 22-151 (362)
113 2xot_A Amphoterin-induced prot 99.5 2.7E-13 9.4E-18 138.6 13.9 153 273-444 21-178 (361)
114 3e6j_A Variable lymphocyte rec 99.5 4.3E-13 1.5E-17 127.6 14.0 132 267-406 37-172 (229)
115 3cvr_A Invasion plasmid antige 99.5 7.6E-13 2.6E-17 142.1 17.4 93 301-405 60-152 (571)
116 3goz_A Leucine-rich repeat-con 99.5 4.2E-14 1.4E-18 144.8 7.0 259 304-586 2-295 (362)
117 2wfh_A SLIT homolog 2 protein 99.5 5.6E-13 1.9E-17 123.0 13.3 124 273-406 13-139 (193)
118 2o6s_A Variable lymphocyte rec 99.4 4.8E-13 1.7E-17 125.4 12.3 149 267-442 25-178 (208)
119 2ell_A Acidic leucine-rich nuc 99.4 3.5E-13 1.2E-17 121.6 10.8 105 300-405 24-132 (168)
120 2ell_A Acidic leucine-rich nuc 99.4 3.5E-13 1.2E-17 121.6 10.0 130 268-406 22-160 (168)
121 2v9t_B SLIT homolog 2 protein 99.4 8.7E-13 3E-17 124.6 12.9 141 257-406 20-165 (220)
122 2v70_A SLIT-2, SLIT homolog 2 99.4 9.6E-13 3.3E-17 124.3 12.8 145 255-406 18-166 (220)
123 2je0_A Acidic leucine-rich nuc 99.4 4.1E-13 1.4E-17 118.5 8.6 122 270-400 17-147 (149)
124 1w8a_A SLIT protein; signaling 99.4 1E-12 3.6E-17 121.2 11.6 125 273-407 11-140 (192)
125 2je0_A Acidic leucine-rich nuc 99.4 9.2E-13 3.1E-17 116.2 8.8 108 299-407 16-127 (149)
126 1a9n_A U2A', U2A'; complex (nu 99.4 1E-12 3.5E-17 119.5 8.7 105 299-405 18-125 (176)
127 2xot_A Amphoterin-induced prot 99.4 3.6E-12 1.2E-16 130.3 13.0 165 255-442 25-202 (361)
128 1a9n_A U2A', U2A'; complex (nu 99.3 2.1E-12 7.2E-17 117.4 9.1 130 268-406 17-153 (176)
129 2o6r_A Variable lymphocyte rec 99.3 1.1E-11 3.6E-16 112.9 13.1 125 272-406 9-137 (177)
130 1w8a_A SLIT protein; signaling 99.3 9.9E-12 3.4E-16 114.6 10.6 125 303-442 11-139 (192)
131 2wfh_A SLIT homolog 2 protein 99.3 2.6E-11 9E-16 111.8 11.7 126 303-443 13-140 (193)
132 4b8c_D Glucose-repressible alc 99.3 7.2E-12 2.5E-16 139.5 9.2 107 299-407 223-330 (727)
133 1dce_A Protein (RAB geranylger 99.3 1.7E-11 5.9E-16 132.2 11.8 103 301-407 442-547 (567)
134 1dce_A Protein (RAB geranylger 99.2 2.4E-11 8.2E-16 131.1 12.0 148 299-461 408-566 (567)
135 4b8c_D Glucose-repressible alc 99.2 3.2E-11 1.1E-15 134.3 11.1 154 269-444 172-331 (727)
136 2o6r_A Variable lymphocyte rec 99.2 1.8E-10 6.1E-15 104.7 12.1 127 301-442 8-137 (177)
137 1ds9_A Outer arm dynein; leuci 99.2 2.2E-12 7.5E-17 119.8 -1.3 105 299-406 47-153 (198)
138 2r9u_A Variable lymphocyte rec 99.1 1.2E-10 4E-15 105.4 10.0 97 273-378 15-115 (174)
139 3g39_A Variable lymphocyte rec 99.1 1.3E-10 4.4E-15 104.8 10.0 100 303-405 12-114 (170)
140 1ds9_A Outer arm dynein; leuci 99.1 8E-12 2.7E-16 115.9 1.2 131 300-444 23-155 (198)
141 3g39_A Variable lymphocyte rec 99.1 3.5E-10 1.2E-14 101.9 10.7 100 272-380 11-114 (170)
142 2r9u_A Variable lymphocyte rec 99.1 3.7E-10 1.3E-14 102.0 10.8 103 302-407 14-119 (174)
143 3sb4_A Hypothetical leucine ri 98.9 5.6E-09 1.9E-13 105.0 10.9 250 299-581 48-327 (329)
144 2ifg_A High affinity nerve gro 98.7 1.6E-08 5.6E-13 102.4 8.9 97 274-378 12-113 (347)
145 3sb4_A Hypothetical leucine ri 98.7 7.7E-08 2.6E-12 96.7 11.7 237 269-555 48-327 (329)
146 2ifg_A High affinity nerve gro 98.7 4.5E-08 1.5E-12 99.2 9.7 100 304-406 12-116 (347)
147 4fdw_A Leucine rich hypothetic 98.7 4.5E-07 1.5E-11 93.3 17.0 98 301-403 136-236 (401)
148 3un9_A NLR family member X1; l 98.6 7.2E-09 2.5E-13 105.7 1.9 160 268-443 70-253 (372)
149 1w5s_A Origin recognition comp 98.5 1.2E-07 4.2E-12 98.4 8.4 114 3-116 56-190 (412)
150 3un9_A NLR family member X1; l 98.5 3E-08 1E-12 101.1 2.1 136 299-443 71-225 (372)
151 2qby_B CDC6 homolog 3, cell di 98.4 4.6E-07 1.6E-11 93.1 8.7 115 2-116 48-175 (384)
152 2v1u_A Cell division control p 98.3 2.4E-06 8.3E-11 87.7 11.1 115 2-116 47-178 (387)
153 2qby_A CDC6 homolog 1, cell di 98.3 1.3E-06 4.4E-11 89.7 8.7 117 1-117 47-175 (386)
154 4fdw_A Leucine rich hypothetic 98.3 2.1E-05 7.1E-10 80.8 17.3 98 300-402 157-257 (401)
155 1njg_A DNA polymerase III subu 98.2 1.1E-05 3.8E-10 76.7 13.1 131 2-139 48-197 (250)
156 3e4g_A ATP synthase subunit S, 98.2 5.7E-07 1.9E-11 79.7 3.0 92 491-589 62-153 (176)
157 1fnn_A CDC6P, cell division co 98.2 8.4E-06 2.9E-10 83.7 12.4 114 2-116 47-170 (389)
158 2chg_A Replication factor C sm 98.2 2.2E-05 7.5E-10 73.4 14.0 101 2-116 41-143 (226)
159 2qen_A Walker-type ATPase; unk 98.2 1.8E-06 6.3E-11 87.2 6.3 108 1-116 33-175 (350)
160 3e4g_A ATP synthase subunit S, 98.1 1.6E-06 5.4E-11 76.8 4.9 85 299-383 60-154 (176)
161 2fna_A Conserved hypothetical 98.1 3.7E-06 1.3E-10 85.2 7.9 110 1-116 32-181 (357)
162 2ra8_A Uncharacterized protein 98.1 7.2E-06 2.4E-10 82.7 8.3 23 201-223 44-66 (362)
163 1io0_A Tropomodulin; LRR prote 98.0 3E-06 1E-10 77.0 4.7 106 299-405 35-163 (185)
164 2ra8_A Uncharacterized protein 98.0 1E-05 3.5E-10 81.6 8.8 18 487-507 304-321 (362)
165 3rw6_A Nuclear RNA export fact 97.9 1.5E-05 5.1E-10 76.2 7.2 60 299-358 169-233 (267)
166 3ec2_A DNA replication protein 97.9 1.9E-05 6.4E-10 71.3 6.8 99 2-116 41-144 (180)
167 3te6_A Regulatory protein SIR3 97.9 9.4E-05 3.2E-09 72.5 12.2 89 2-90 48-145 (318)
168 4fs7_A Uncharacterized protein 97.8 0.00016 5.5E-09 74.2 13.1 55 270-332 71-126 (394)
169 3rw6_A Nuclear RNA export fact 97.8 2E-05 6.9E-10 75.3 5.5 94 305-399 148-257 (267)
170 1io0_A Tropomodulin; LRR prote 97.7 1.6E-05 5.4E-10 72.1 4.1 103 269-378 35-161 (185)
171 2w58_A DNAI, primosome compone 97.7 2.7E-05 9.2E-10 71.8 5.1 97 2-115 57-159 (202)
172 1sxj_B Activator 1 37 kDa subu 97.6 6.4E-05 2.2E-09 74.8 6.0 124 2-139 45-178 (323)
173 2z4s_A Chromosomal replication 97.4 0.00025 8.6E-09 73.6 8.2 100 2-115 133-237 (440)
174 2kjq_A DNAA-related protein; s 97.4 0.00012 4.1E-09 63.5 4.7 37 1-39 38-74 (149)
175 1iqp_A RFCS; clamp loader, ext 97.4 0.00012 4E-09 73.1 4.6 123 2-139 49-181 (327)
176 1jbk_A CLPB protein; beta barr 97.4 0.00032 1.1E-08 63.5 7.3 24 2-25 46-69 (195)
177 4fs7_A Uncharacterized protein 97.3 0.0018 6.2E-08 66.3 13.2 99 487-603 294-392 (394)
178 3syl_A Protein CBBX; photosynt 97.2 0.00032 1.1E-08 69.3 6.3 25 2-26 70-94 (309)
179 3h4m_A Proteasome-activating n 97.2 0.00044 1.5E-08 67.4 6.6 23 2-24 54-76 (285)
180 3bos_A Putative DNA replicatio 97.1 0.00017 6E-09 68.1 2.2 36 2-39 55-90 (242)
181 3n70_A Transport activator; si 97.0 0.00032 1.1E-08 60.6 3.5 86 2-114 27-115 (145)
182 2chq_A Replication factor C sm 97.0 0.00075 2.6E-08 66.8 6.4 121 2-139 41-173 (319)
183 1d2n_A N-ethylmaleimide-sensit 97.0 0.00083 2.8E-08 64.9 6.4 23 2-24 67-89 (272)
184 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.0032 1.1E-07 62.3 10.5 69 2-89 48-117 (322)
185 3eie_A Vacuolar protein sortin 97.0 0.0018 6.1E-08 64.3 8.6 23 2-24 54-76 (322)
186 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.0023 7.9E-08 61.2 9.2 23 2-24 42-64 (262)
187 1l8q_A Chromosomal replication 96.9 0.0011 3.8E-08 65.8 6.7 97 2-115 40-141 (324)
188 1jr3_A DNA polymerase III subu 96.9 0.0014 4.9E-08 66.4 7.4 131 2-139 41-190 (373)
189 1hqc_A RUVB; extended AAA-ATPa 96.8 0.0083 2.8E-07 59.4 12.2 23 2-24 41-63 (324)
190 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00059 2E-08 66.2 3.5 67 2-89 126-194 (331)
191 3pvs_A Replication-associated 96.8 0.0035 1.2E-07 64.9 9.6 113 2-139 53-177 (447)
192 2qgz_A Helicase loader, putati 96.8 0.00074 2.5E-08 66.4 4.0 34 2-37 155-189 (308)
193 1n0w_A DNA repair protein RAD5 96.7 0.0081 2.8E-07 56.6 10.8 86 1-87 26-129 (243)
194 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0048 1.6E-07 57.7 8.8 111 1-116 25-169 (235)
195 2p65_A Hypothetical protein PF 96.7 0.001 3.5E-08 59.8 3.9 24 2-25 46-69 (187)
196 1a5t_A Delta prime, HOLB; zinc 96.7 0.0077 2.6E-07 59.9 10.7 98 2-116 27-149 (334)
197 2cvh_A DNA repair and recombin 96.7 0.0049 1.7E-07 57.1 8.7 83 1-89 22-117 (220)
198 2qp9_X Vacuolar protein sortin 96.7 0.0037 1.3E-07 62.8 8.3 23 2-24 87-109 (355)
199 3u61_B DNA polymerase accessor 96.6 0.0019 6.5E-08 64.1 5.8 94 2-116 51-147 (324)
200 3lw7_A Adenylate kinase relate 96.6 0.0062 2.1E-07 54.0 8.4 19 1-19 3-21 (179)
201 2zan_A Vacuolar protein sortin 96.6 0.0074 2.5E-07 62.6 9.9 22 2-23 170-191 (444)
202 4gt6_A Cell surface protein; l 96.5 0.033 1.1E-06 56.8 14.3 96 302-401 66-168 (394)
203 4gt6_A Cell surface protein; l 96.5 0.035 1.2E-06 56.6 14.3 100 299-403 86-192 (394)
204 1sxj_E Activator 1 40 kDa subu 96.5 0.0071 2.4E-07 60.7 8.9 22 2-23 39-60 (354)
205 3uk6_A RUVB-like 2; hexameric 96.4 0.0053 1.8E-07 62.1 7.2 24 2-25 73-96 (368)
206 3t15_A Ribulose bisphosphate c 96.4 0.0035 1.2E-07 61.1 5.6 23 2-24 39-61 (293)
207 3cf0_A Transitional endoplasmi 96.3 0.0054 1.8E-07 60.1 6.8 23 2-24 52-74 (301)
208 3hr8_A Protein RECA; alpha and 96.3 0.015 5.2E-07 57.8 10.0 81 1-88 63-150 (356)
209 3d8b_A Fidgetin-like protein 1 96.3 0.0053 1.8E-07 61.7 6.9 23 2-24 120-142 (357)
210 1sxj_D Activator 1 41 kDa subu 96.3 0.0043 1.5E-07 62.3 6.2 110 2-116 61-174 (353)
211 3vfd_A Spastin; ATPase, microt 96.3 0.008 2.7E-07 61.3 8.0 23 2-24 151-173 (389)
212 2r62_A Cell division protease 96.2 0.013 4.6E-07 56.1 8.9 24 2-25 47-70 (268)
213 1lv7_A FTSH; alpha/beta domain 96.2 0.011 3.8E-07 56.3 8.2 23 2-24 48-70 (257)
214 1v5w_A DMC1, meiotic recombina 96.2 0.018 6.3E-07 57.3 10.1 55 1-56 124-182 (343)
215 1sxj_C Activator 1 40 kDa subu 96.2 0.0061 2.1E-07 60.9 6.4 23 2-24 49-71 (340)
216 2ce7_A Cell division protein F 96.2 0.007 2.4E-07 62.8 6.9 23 2-24 52-74 (476)
217 3co5_A Putative two-component 96.2 0.0015 5.1E-08 56.1 1.6 22 2-23 30-51 (143)
218 3ice_A Transcription terminati 96.2 0.005 1.7E-07 61.1 5.4 85 2-87 177-271 (422)
219 3io5_A Recombination and repai 96.2 0.027 9.1E-07 54.5 10.3 82 2-88 31-122 (333)
220 3b9p_A CG5977-PA, isoform A; A 96.1 0.0075 2.6E-07 58.9 6.7 23 2-24 57-79 (297)
221 2gno_A DNA polymerase III, gam 96.1 0.017 5.8E-07 56.4 9.1 97 2-115 21-122 (305)
222 2z43_A DNA repair and recombin 96.0 0.033 1.1E-06 55.0 10.7 86 1-87 109-213 (324)
223 4fcw_A Chaperone protein CLPB; 96.0 0.0073 2.5E-07 59.4 5.9 36 2-39 50-85 (311)
224 2zr9_A Protein RECA, recombina 96.0 0.026 9E-07 56.2 9.8 81 1-88 63-150 (349)
225 1u94_A RECA protein, recombina 96.0 0.025 8.5E-07 56.4 9.6 80 1-87 65-151 (356)
226 1xp8_A RECA protein, recombina 95.9 0.032 1.1E-06 55.8 10.3 81 1-88 76-163 (366)
227 1sky_E F1-ATPase, F1-ATP synth 95.8 0.041 1.4E-06 56.4 10.3 85 2-87 154-255 (473)
228 2x8a_A Nuclear valosin-contain 95.8 0.019 6.5E-07 55.2 7.5 65 2-88 47-114 (274)
229 1fx0_B ATP synthase beta chain 95.7 0.031 1.1E-06 57.4 9.2 84 2-86 168-275 (498)
230 2ck3_D ATP synthase subunit be 95.7 0.059 2E-06 55.1 11.2 84 2-86 156-262 (482)
231 2i1q_A DNA repair and recombin 95.6 0.038 1.3E-06 54.5 9.5 85 1-86 100-213 (322)
232 3rfe_A Platelet glycoprotein I 95.6 0.022 7.6E-07 47.7 6.4 53 274-335 12-67 (130)
233 3lda_A DNA repair protein RAD5 95.6 0.028 9.5E-07 57.0 8.3 55 1-56 180-238 (400)
234 1kag_A SKI, shikimate kinase I 95.6 0.0067 2.3E-07 53.7 3.3 24 1-24 6-29 (173)
235 1pgv_A TMD-1, tropomodulin TMD 95.6 0.012 4.2E-07 52.9 5.0 106 299-404 40-168 (197)
236 2b8t_A Thymidine kinase; deoxy 95.5 0.008 2.7E-07 55.5 3.8 110 1-118 14-129 (223)
237 2px0_A Flagellar biosynthesis 95.5 0.049 1.7E-06 52.9 9.4 37 1-38 107-143 (296)
238 4b4t_L 26S protease subunit RP 95.5 0.019 6.3E-07 58.7 6.7 97 2-118 218-333 (437)
239 3kb2_A SPBC2 prophage-derived 95.5 0.0066 2.2E-07 53.7 3.0 24 1-24 3-26 (173)
240 1qhx_A CPT, protein (chloramph 95.5 0.0067 2.3E-07 54.0 3.0 24 1-24 5-28 (178)
241 4h09_A Hypothetical leucine ri 95.4 0.41 1.4E-05 48.1 16.6 98 299-403 68-168 (379)
242 1ixz_A ATP-dependent metallopr 95.4 0.019 6.5E-07 54.5 6.2 23 2-24 52-74 (254)
243 3t61_A Gluconokinase; PSI-biol 95.4 0.0084 2.9E-07 54.7 3.5 23 1-23 20-42 (202)
244 3m6a_A ATP-dependent protease 95.4 0.042 1.4E-06 58.4 9.3 23 2-24 111-133 (543)
245 4b4t_J 26S protease regulatory 95.4 0.019 6.4E-07 57.7 6.1 68 2-89 185-253 (405)
246 1zp6_A Hypothetical protein AT 95.3 0.007 2.4E-07 54.7 2.6 22 1-22 11-32 (191)
247 1iy2_A ATP-dependent metallopr 95.3 0.027 9.1E-07 54.3 6.8 23 2-24 76-98 (278)
248 3l0o_A Transcription terminati 95.2 0.0068 2.3E-07 60.0 2.3 85 2-87 178-272 (427)
249 1kgd_A CASK, peripheral plasma 95.2 0.0085 2.9E-07 53.6 2.8 23 1-23 7-29 (180)
250 2ehv_A Hypothetical protein PH 95.2 0.048 1.7E-06 51.4 8.3 36 1-38 32-68 (251)
251 3vaa_A Shikimate kinase, SK; s 95.2 0.009 3.1E-07 54.4 3.0 24 1-24 27-50 (199)
252 3a00_A Guanylate kinase, GMP k 95.2 0.01 3.5E-07 53.3 3.3 24 1-24 3-26 (186)
253 2orw_A Thymidine kinase; TMTK, 95.2 0.0021 7.3E-08 57.7 -1.3 106 1-116 5-114 (184)
254 4b4t_K 26S protease regulatory 95.1 0.022 7.6E-07 58.0 5.9 24 2-25 209-232 (428)
255 3tr0_A Guanylate kinase, GMP k 95.1 0.0092 3.1E-07 54.5 2.8 23 1-23 9-31 (205)
256 3uie_A Adenylyl-sulfate kinase 95.1 0.0094 3.2E-07 54.3 2.8 25 1-25 27-51 (200)
257 3c8u_A Fructokinase; YP_612366 95.1 0.0087 3E-07 55.0 2.5 25 1-25 24-48 (208)
258 3rfe_A Platelet glycoprotein I 95.1 0.027 9.4E-07 47.1 5.4 54 349-405 12-67 (130)
259 1ly1_A Polynucleotide kinase; 95.1 0.01 3.4E-07 52.9 2.8 21 1-21 4-24 (181)
260 4eun_A Thermoresistant glucoki 95.1 0.011 3.6E-07 54.0 3.0 23 1-23 31-53 (200)
261 1pzn_A RAD51, DNA repair and r 95.0 0.042 1.4E-06 54.8 7.5 53 1-54 133-189 (349)
262 3iij_A Coilin-interacting nucl 95.0 0.013 4.5E-07 52.2 3.5 24 1-24 13-36 (180)
263 1knq_A Gluconate kinase; ALFA/ 95.0 0.011 3.9E-07 52.4 3.0 23 1-23 10-32 (175)
264 1sxj_A Activator 1 95 kDa subu 95.0 0.015 5.1E-07 61.6 4.4 79 2-89 80-160 (516)
265 2qor_A Guanylate kinase; phosp 95.0 0.013 4.5E-07 53.5 3.5 23 1-23 14-36 (204)
266 1via_A Shikimate kinase; struc 95.0 0.014 4.8E-07 51.8 3.5 24 1-24 6-29 (175)
267 3asz_A Uridine kinase; cytidin 94.9 0.011 3.7E-07 54.4 2.8 24 1-24 8-31 (211)
268 2bdt_A BH3686; alpha-beta prot 94.9 0.011 3.9E-07 53.2 2.8 21 1-21 4-24 (189)
269 2if2_A Dephospho-COA kinase; a 94.9 0.011 3.9E-07 53.9 2.8 21 1-21 3-23 (204)
270 3trf_A Shikimate kinase, SK; a 94.9 0.013 4.3E-07 52.6 3.0 23 2-24 8-30 (185)
271 4b4t_H 26S protease regulatory 94.9 0.026 8.8E-07 57.6 5.5 25 2-26 246-270 (467)
272 4b4t_M 26S protease regulatory 94.9 0.02 7E-07 58.4 4.8 24 2-25 218-241 (434)
273 2iyv_A Shikimate kinase, SK; t 94.9 0.015 5.1E-07 52.1 3.4 24 1-24 4-27 (184)
274 4gp7_A Metallophosphoesterase; 94.9 0.0091 3.1E-07 52.9 1.9 20 1-20 11-30 (171)
275 4b4t_I 26S protease regulatory 94.9 0.034 1.2E-06 56.2 6.2 25 2-26 219-243 (437)
276 1ye8_A Protein THEP1, hypothet 94.9 0.014 4.9E-07 51.9 3.2 24 2-25 3-26 (178)
277 2j41_A Guanylate kinase; GMP, 94.8 0.012 4.2E-07 53.7 2.8 23 1-23 8-30 (207)
278 1kht_A Adenylate kinase; phosp 94.8 0.014 4.6E-07 52.6 3.0 24 1-24 5-28 (192)
279 3pfi_A Holliday junction ATP-d 94.8 0.038 1.3E-06 54.9 6.5 23 2-24 58-80 (338)
280 1lvg_A Guanylate kinase, GMP k 94.8 0.016 5.3E-07 52.8 3.3 23 1-23 6-28 (198)
281 1zuh_A Shikimate kinase; alpha 94.8 0.014 4.9E-07 51.3 3.0 24 1-24 9-32 (168)
282 3vr4_D V-type sodium ATPase su 94.8 0.061 2.1E-06 54.6 7.8 86 2-87 154-258 (465)
283 1cke_A CK, MSSA, protein (cyti 94.7 0.014 4.8E-07 54.3 3.0 23 1-23 7-29 (227)
284 1nks_A Adenylate kinase; therm 94.7 0.014 4.9E-07 52.6 2.9 25 1-25 3-27 (194)
285 2jaq_A Deoxyguanosine kinase; 94.7 0.015 5E-07 53.1 3.0 24 1-24 2-25 (205)
286 1e6c_A Shikimate kinase; phosp 94.7 0.018 6.2E-07 50.9 3.5 24 1-24 4-27 (173)
287 2grj_A Dephospho-COA kinase; T 94.7 0.015 5.2E-07 52.4 3.0 22 1-22 14-35 (192)
288 3tau_A Guanylate kinase, GMP k 94.7 0.014 4.8E-07 53.5 2.8 24 1-24 10-33 (208)
289 1vma_A Cell division protein F 94.7 0.1 3.6E-06 50.7 9.1 85 1-88 106-197 (306)
290 1xjc_A MOBB protein homolog; s 94.7 0.019 6.6E-07 50.3 3.5 26 1-26 6-31 (169)
291 1htw_A HI0065; nucleotide-bind 94.7 0.015 5.2E-07 50.5 2.8 23 1-23 35-57 (158)
292 1z6g_A Guanylate kinase; struc 94.7 0.017 5.9E-07 53.3 3.3 23 1-23 25-47 (218)
293 2jeo_A Uridine-cytidine kinase 94.6 0.015 5E-07 55.0 2.8 23 1-23 27-49 (245)
294 1jjv_A Dephospho-COA kinase; P 94.6 0.014 4.9E-07 53.3 2.7 21 1-21 4-24 (206)
295 2yvu_A Probable adenylyl-sulfa 94.6 0.02 6.7E-07 51.4 3.5 26 1-26 15-40 (186)
296 2ze6_A Isopentenyl transferase 94.6 0.017 5.7E-07 54.8 3.1 24 1-24 3-26 (253)
297 2rhm_A Putative kinase; P-loop 94.6 0.016 5.6E-07 52.2 2.9 23 1-23 7-29 (193)
298 1y63_A LMAJ004144AAA protein; 94.6 0.017 5.9E-07 51.7 3.0 22 1-22 12-33 (184)
299 1ojl_A Transcriptional regulat 94.6 0.026 9E-07 55.1 4.5 22 2-23 28-49 (304)
300 3hu3_A Transitional endoplasmi 94.6 0.04 1.4E-06 57.6 6.2 22 2-23 241-262 (489)
301 3jvv_A Twitching mobility prot 94.5 0.011 3.9E-07 58.9 1.9 109 1-118 125-234 (356)
302 4a74_A DNA repair and recombin 94.5 0.051 1.8E-06 50.4 6.3 44 1-44 27-74 (231)
303 3aez_A Pantothenate kinase; tr 94.5 0.016 5.5E-07 56.8 2.8 37 1-37 92-128 (312)
304 1rz3_A Hypothetical protein rb 94.5 0.016 5.6E-07 52.7 2.8 25 1-25 24-48 (201)
305 2qt1_A Nicotinamide riboside k 94.5 0.016 5.4E-07 53.1 2.6 22 1-22 23-44 (207)
306 1znw_A Guanylate kinase, GMP k 94.5 0.017 5.9E-07 52.9 2.8 23 1-23 22-44 (207)
307 2bbw_A Adenylate kinase 4, AK4 94.5 0.018 6E-07 54.5 3.0 23 1-23 29-51 (246)
308 4e22_A Cytidylate kinase; P-lo 94.5 0.018 6.1E-07 54.7 3.0 24 1-24 29-52 (252)
309 2i3b_A HCR-ntpase, human cance 94.5 0.024 8.3E-07 50.9 3.7 24 1-24 3-26 (189)
310 1j8m_F SRP54, signal recogniti 94.4 0.15 5.2E-06 49.3 9.6 87 1-89 100-192 (297)
311 1tev_A UMP-CMP kinase; ploop, 94.4 0.019 6.4E-07 51.9 3.0 23 1-23 5-27 (196)
312 3cm0_A Adenylate kinase; ATP-b 94.4 0.019 6.5E-07 51.4 3.0 23 1-23 6-28 (186)
313 2ffh_A Protein (FFH); SRP54, s 94.4 0.14 4.7E-06 52.2 9.5 84 1-87 100-190 (425)
314 2bwj_A Adenylate kinase 5; pho 94.4 0.019 6.5E-07 52.1 2.9 24 1-24 14-37 (199)
315 2pt5_A Shikimate kinase, SK; a 94.4 0.02 6.9E-07 50.3 3.0 24 1-24 2-25 (168)
316 1odf_A YGR205W, hypothetical 3 94.4 0.018 6.2E-07 55.7 2.8 52 1-52 33-85 (290)
317 2c95_A Adenylate kinase 1; tra 94.4 0.02 6.7E-07 51.8 2.9 23 1-23 11-33 (196)
318 2f1r_A Molybdopterin-guanine d 94.3 0.019 6.7E-07 50.6 2.7 36 1-36 4-39 (171)
319 2pbr_A DTMP kinase, thymidylat 94.3 0.021 7.3E-07 51.5 3.0 24 1-24 2-25 (195)
320 1uf9_A TT1252 protein; P-loop, 94.2 0.02 7E-07 52.0 2.8 22 1-22 10-31 (203)
321 2vli_A Antibiotic resistance p 94.2 0.016 5.6E-07 51.7 2.0 24 1-24 7-30 (183)
322 1ukz_A Uridylate kinase; trans 94.2 0.022 7.7E-07 51.8 3.0 23 1-23 17-39 (203)
323 2cdn_A Adenylate kinase; phosp 94.2 0.023 7.8E-07 51.7 3.0 24 1-24 22-45 (201)
324 1ls1_A Signal recognition part 94.2 0.18 6.2E-06 48.8 9.5 85 1-87 100-190 (295)
325 3fwy_A Light-independent proto 94.2 0.026 9E-07 55.2 3.5 37 1-39 50-86 (314)
326 1qf9_A UMP/CMP kinase, protein 94.1 0.023 7.9E-07 51.1 2.9 23 1-23 8-30 (194)
327 3gmt_A Adenylate kinase; ssgci 94.1 0.17 5.8E-06 46.7 8.6 23 2-24 11-33 (230)
328 3ney_A 55 kDa erythrocyte memb 94.1 0.025 8.6E-07 51.0 3.0 23 1-23 21-43 (197)
329 1ex7_A Guanylate kinase; subst 94.1 0.029 9.9E-07 50.1 3.3 22 2-23 4-25 (186)
330 1s96_A Guanylate kinase, GMP k 94.1 0.024 8.1E-07 52.4 2.8 24 1-24 18-41 (219)
331 2plr_A DTMP kinase, probable t 94.1 0.025 8.5E-07 51.9 3.0 26 1-26 6-31 (213)
332 2xxa_A Signal recognition part 94.0 0.25 8.5E-06 50.6 10.6 86 1-87 102-193 (433)
333 3nwj_A ATSK2; P loop, shikimat 94.0 0.028 9.7E-07 52.9 3.3 24 1-24 50-73 (250)
334 2z0h_A DTMP kinase, thymidylat 94.0 0.026 8.9E-07 51.0 3.0 25 1-25 2-26 (197)
335 1uj2_A Uridine-cytidine kinase 94.0 0.024 8.3E-07 53.7 2.8 24 1-24 24-47 (252)
336 1g5t_A COB(I)alamin adenosyltr 94.0 0.1 3.5E-06 46.7 6.6 109 2-116 31-164 (196)
337 3a4m_A L-seryl-tRNA(SEC) kinas 94.0 0.026 8.9E-07 53.8 3.0 24 1-24 6-29 (260)
338 3pxg_A Negative regulator of g 94.0 0.092 3.1E-06 54.7 7.4 23 2-24 204-226 (468)
339 2ck3_A ATP synthase subunit al 93.9 0.18 6.3E-06 51.9 9.3 86 2-87 165-272 (510)
340 1gtv_A TMK, thymidylate kinase 93.9 0.017 6E-07 53.0 1.6 25 1-25 2-26 (214)
341 2c61_A A-type ATP synthase non 93.9 0.091 3.1E-06 53.7 6.9 85 2-86 155-258 (469)
342 1qvr_A CLPB protein; coiled co 93.9 0.097 3.3E-06 59.1 7.9 24 2-25 194-217 (854)
343 2pez_A Bifunctional 3'-phospho 93.9 0.028 9.5E-07 50.0 2.8 25 1-25 7-31 (179)
344 1sgw_A Putative ABC transporte 93.9 0.026 8.9E-07 51.8 2.6 23 1-23 37-59 (214)
345 2wwf_A Thymidilate kinase, put 93.8 0.028 9.7E-07 51.5 2.9 30 1-31 12-41 (212)
346 3fb4_A Adenylate kinase; psych 93.8 0.033 1.1E-06 51.3 3.3 22 2-23 3-24 (216)
347 1vht_A Dephospho-COA kinase; s 93.8 0.028 9.4E-07 51.9 2.8 21 1-21 6-26 (218)
348 1nn5_A Similar to deoxythymidy 93.8 0.029 9.9E-07 51.5 2.9 30 1-31 11-40 (215)
349 1rj9_A FTSY, signal recognitio 93.8 0.034 1.2E-06 54.1 3.5 26 1-26 104-129 (304)
350 1zak_A Adenylate kinase; ATP:A 93.8 0.035 1.2E-06 51.4 3.4 24 1-24 7-30 (222)
351 1zd8_A GTP:AMP phosphotransfer 93.8 0.029 1E-06 52.1 2.9 23 1-23 9-31 (227)
352 1in4_A RUVB, holliday junction 93.8 0.032 1.1E-06 55.4 3.3 24 1-24 53-76 (334)
353 3dl0_A Adenylate kinase; phosp 93.7 0.035 1.2E-06 51.1 3.3 22 2-23 3-24 (216)
354 3b85_A Phosphate starvation-in 93.7 0.023 7.9E-07 52.0 2.0 22 1-22 24-45 (208)
355 2onk_A Molybdate/tungstate ABC 93.7 0.028 9.6E-07 52.7 2.6 32 1-35 26-57 (240)
356 1sq5_A Pantothenate kinase; P- 93.7 0.028 9.7E-07 55.0 2.8 24 1-24 82-105 (308)
357 2pcj_A ABC transporter, lipopr 93.7 0.024 8.3E-07 52.6 2.1 32 1-35 32-63 (224)
358 3gqb_B V-type ATP synthase bet 93.6 0.09 3.1E-06 53.4 6.3 86 2-87 150-261 (464)
359 3tif_A Uncharacterized ABC tra 93.6 0.028 9.5E-07 52.6 2.5 32 1-35 33-64 (235)
360 3mfy_A V-type ATP synthase alp 93.6 0.12 4E-06 53.7 7.2 82 2-87 230-334 (588)
361 3lnc_A Guanylate kinase, GMP k 93.6 0.02 7E-07 53.4 1.4 23 1-23 29-52 (231)
362 3cf2_A TER ATPase, transitiona 93.6 0.058 2E-06 59.5 5.2 23 2-24 241-263 (806)
363 3b9q_A Chloroplast SRP recepto 93.6 0.039 1.3E-06 53.7 3.5 39 1-42 102-140 (302)
364 3tqc_A Pantothenate kinase; bi 93.6 0.032 1.1E-06 54.6 2.8 24 1-24 94-117 (321)
365 2dhr_A FTSH; AAA+ protein, hex 93.5 0.12 4E-06 54.0 7.2 23 2-24 67-89 (499)
366 3ake_A Cytidylate kinase; CMP 93.5 0.036 1.2E-06 50.6 3.0 24 1-24 4-27 (208)
367 1aky_A Adenylate kinase; ATP:A 93.5 0.041 1.4E-06 50.9 3.3 24 1-24 6-29 (220)
368 2v54_A DTMP kinase, thymidylat 93.5 0.035 1.2E-06 50.5 2.8 23 1-23 6-28 (204)
369 3hjn_A DTMP kinase, thymidylat 93.4 0.25 8.4E-06 44.6 8.4 25 2-26 3-27 (197)
370 3r20_A Cytidylate kinase; stru 93.4 0.038 1.3E-06 51.3 3.0 24 1-24 11-34 (233)
371 1m7g_A Adenylylsulfate kinase; 93.4 0.038 1.3E-06 50.7 3.0 24 1-24 27-50 (211)
372 2qe7_A ATP synthase subunit al 93.4 0.13 4.6E-06 52.8 7.1 81 2-86 165-263 (502)
373 1np6_A Molybdopterin-guanine d 93.4 0.049 1.7E-06 48.1 3.5 25 1-25 8-32 (174)
374 3gfo_A Cobalt import ATP-bindi 93.4 0.033 1.1E-06 53.4 2.5 22 1-22 36-57 (275)
375 2r9v_A ATP synthase subunit al 93.3 0.12 4.1E-06 53.2 6.6 81 2-86 178-276 (515)
376 2d2e_A SUFC protein; ABC-ATPas 93.3 0.036 1.2E-06 52.4 2.7 22 1-22 31-52 (250)
377 2f6r_A COA synthase, bifunctio 93.3 0.035 1.2E-06 53.5 2.6 20 1-20 77-96 (281)
378 2zu0_C Probable ATP-dependent 93.2 0.037 1.3E-06 52.9 2.6 22 1-22 48-69 (267)
379 2cbz_A Multidrug resistance-as 93.2 0.036 1.2E-06 51.9 2.5 24 1-24 33-56 (237)
380 1gvn_B Zeta; postsegregational 93.2 0.037 1.3E-06 53.5 2.6 23 1-23 35-57 (287)
381 3pxi_A Negative regulator of g 93.2 0.035 1.2E-06 61.9 2.9 36 2-39 524-559 (758)
382 1b0u_A Histidine permease; ABC 93.2 0.035 1.2E-06 52.8 2.5 32 1-35 34-65 (262)
383 4g1u_C Hemin import ATP-bindin 93.2 0.036 1.2E-06 52.9 2.5 32 1-35 39-70 (266)
384 1ji0_A ABC transporter; ATP bi 93.2 0.032 1.1E-06 52.3 2.1 32 1-35 34-65 (240)
385 1g6h_A High-affinity branched- 93.2 0.032 1.1E-06 52.9 2.1 32 1-35 35-66 (257)
386 2olj_A Amino acid ABC transpor 93.1 0.033 1.1E-06 53.0 2.1 32 1-35 52-83 (263)
387 1e4v_A Adenylate kinase; trans 93.1 0.051 1.7E-06 50.0 3.3 22 2-23 3-24 (214)
388 3d3q_A TRNA delta(2)-isopenten 93.1 0.044 1.5E-06 53.8 3.0 23 1-23 9-31 (340)
389 2pze_A Cystic fibrosis transme 93.1 0.034 1.2E-06 51.7 2.1 24 1-24 36-59 (229)
390 1vpl_A ABC transporter, ATP-bi 93.1 0.034 1.2E-06 52.7 2.1 23 1-23 43-65 (256)
391 1r6b_X CLPA protein; AAA+, N-t 93.1 0.44 1.5E-05 53.0 11.5 23 2-24 210-232 (758)
392 2eyu_A Twitching motility prot 93.1 0.075 2.6E-06 50.5 4.5 109 1-118 27-136 (261)
393 3e70_C DPA, signal recognition 93.1 0.052 1.8E-06 53.4 3.5 26 1-26 131-156 (328)
394 3tlx_A Adenylate kinase 2; str 93.0 0.047 1.6E-06 51.4 3.0 23 1-23 31-53 (243)
395 2ff7_A Alpha-hemolysin translo 93.0 0.036 1.2E-06 52.3 2.1 32 1-35 37-68 (247)
396 3vr4_A V-type sodium ATPase ca 93.0 0.16 5.5E-06 52.9 7.0 82 2-87 235-339 (600)
397 2xb4_A Adenylate kinase; ATP-b 93.0 0.055 1.9E-06 50.1 3.3 22 2-23 3-24 (223)
398 3be4_A Adenylate kinase; malar 93.0 0.054 1.8E-06 49.9 3.3 23 2-24 8-30 (217)
399 3end_A Light-independent proto 92.9 0.098 3.4E-06 51.1 5.3 39 1-41 43-81 (307)
400 1mv5_A LMRA, multidrug resista 92.9 0.037 1.3E-06 52.0 2.1 22 1-22 30-51 (243)
401 2og2_A Putative signal recogni 92.9 0.056 1.9E-06 53.8 3.5 25 1-25 159-183 (359)
402 1cr0_A DNA primase/helicase; R 92.9 0.17 5.7E-06 49.1 6.9 49 1-52 37-85 (296)
403 2qi9_C Vitamin B12 import ATP- 92.9 0.039 1.3E-06 52.0 2.1 31 1-35 28-58 (249)
404 3cmu_A Protein RECA, recombina 92.8 0.19 6.5E-06 60.7 8.3 80 1-87 1429-1515(2050)
405 2ixe_A Antigen peptide transpo 92.8 0.039 1.3E-06 52.8 2.1 24 1-24 47-70 (271)
406 1oix_A RAS-related protein RAB 92.8 0.057 1.9E-06 48.6 3.1 22 2-23 32-53 (191)
407 2yz2_A Putative ABC transporte 92.8 0.039 1.3E-06 52.6 2.1 23 1-23 35-57 (266)
408 3kl4_A SRP54, signal recogniti 92.7 0.37 1.2E-05 49.1 9.3 86 1-88 99-190 (433)
409 2ghi_A Transport protein; mult 92.7 0.046 1.6E-06 51.9 2.5 23 1-23 48-70 (260)
410 1qvr_A CLPB protein; coiled co 92.7 0.07 2.4E-06 60.2 4.4 23 2-24 591-613 (854)
411 1yrb_A ATP(GTP)binding protein 92.7 0.061 2.1E-06 51.1 3.4 24 1-24 16-39 (262)
412 3oaa_A ATP synthase subunit al 92.7 0.38 1.3E-05 49.4 9.2 82 2-87 165-264 (513)
413 2nq2_C Hypothetical ABC transp 92.7 0.041 1.4E-06 52.0 2.1 23 1-23 33-55 (253)
414 4eaq_A DTMP kinase, thymidylat 92.7 0.086 2.9E-06 49.0 4.2 29 1-31 28-56 (229)
415 2ihy_A ABC transporter, ATP-bi 92.7 0.041 1.4E-06 52.8 2.1 32 1-35 49-80 (279)
416 1ypw_A Transitional endoplasmi 92.7 0.1 3.6E-06 58.2 5.6 23 2-24 241-263 (806)
417 2hf9_A Probable hydrogenase ni 92.7 0.055 1.9E-06 50.1 2.9 25 1-25 40-64 (226)
418 3bh0_A DNAB-like replicative h 92.7 0.22 7.5E-06 48.7 7.4 49 1-53 70-118 (315)
419 2p5t_B PEZT; postsegregational 92.7 0.041 1.4E-06 52.1 2.0 23 1-23 34-56 (253)
420 1ak2_A Adenylate kinase isoenz 92.6 0.064 2.2E-06 50.1 3.3 23 2-24 19-41 (233)
421 3pxi_A Negative regulator of g 92.6 0.15 5.1E-06 56.8 6.8 22 2-23 204-225 (758)
422 1a7j_A Phosphoribulokinase; tr 92.6 0.03 1E-06 54.2 1.0 24 1-24 7-30 (290)
423 1r6b_X CLPA protein; AAA+, N-t 92.6 0.074 2.5E-06 59.3 4.3 33 2-39 491-523 (758)
424 2f9l_A RAB11B, member RAS onco 92.6 0.065 2.2E-06 48.5 3.2 21 2-22 8-28 (199)
425 2yhs_A FTSY, cell division pro 92.5 0.066 2.3E-06 55.3 3.5 39 1-42 295-333 (503)
426 3sop_A Neuronal-specific septi 92.5 0.063 2.2E-06 51.3 3.1 23 2-24 5-27 (270)
427 1cp2_A CP2, nitrogenase iron p 92.4 0.13 4.4E-06 49.1 5.2 38 1-40 3-40 (269)
428 3umf_A Adenylate kinase; rossm 92.3 0.067 2.3E-06 49.1 2.9 24 1-24 31-54 (217)
429 3sr0_A Adenylate kinase; phosp 92.3 0.069 2.3E-06 48.7 3.0 24 1-24 2-25 (206)
430 3lv8_A DTMP kinase, thymidylat 92.3 0.22 7.5E-06 46.3 6.5 34 1-35 29-62 (236)
431 3cf2_A TER ATPase, transitiona 92.3 0.21 7.3E-06 55.1 7.3 67 2-88 514-581 (806)
432 3dm5_A SRP54, signal recogniti 92.3 0.43 1.5E-05 48.7 9.1 35 1-37 102-136 (443)
433 1fx0_A ATP synthase alpha chai 92.2 0.11 3.9E-06 53.4 4.8 81 2-86 166-264 (507)
434 2v9p_A Replication protein E1; 92.2 0.065 2.2E-06 51.9 2.8 23 1-23 128-150 (305)
435 3kjh_A CO dehydrogenase/acetyl 92.2 0.15 5.1E-06 47.9 5.4 43 2-46 3-45 (254)
436 2dr3_A UPF0273 protein PH0284; 92.1 0.13 4.5E-06 48.1 4.9 37 1-39 25-61 (247)
437 2pjz_A Hypothetical protein ST 92.1 0.055 1.9E-06 51.4 2.1 31 1-35 32-62 (263)
438 2vp4_A Deoxynucleoside kinase; 92.1 0.038 1.3E-06 51.5 1.0 22 1-22 22-43 (230)
439 3crm_A TRNA delta(2)-isopenten 92.1 0.073 2.5E-06 51.9 3.0 23 1-23 7-29 (323)
440 1q3t_A Cytidylate kinase; nucl 92.1 0.073 2.5E-06 49.7 3.0 23 1-23 18-40 (236)
441 2wji_A Ferrous iron transport 92.0 0.081 2.8E-06 46.1 3.0 21 2-22 6-26 (165)
442 1zu4_A FTSY; GTPase, signal re 92.0 0.086 3E-06 51.7 3.5 36 1-38 107-142 (320)
443 2wsm_A Hydrogenase expression/ 92.0 0.075 2.6E-06 49.0 2.9 24 1-24 32-55 (221)
444 3cwq_A Para family chromosome 92.0 0.19 6.5E-06 45.9 5.6 44 1-47 2-46 (209)
445 4h09_A Hypothetical leucine ri 91.9 0.28 9.6E-06 49.4 7.4 99 299-401 216-318 (379)
446 3kta_A Chromosome segregation 91.9 0.072 2.5E-06 47.4 2.6 22 1-22 28-49 (182)
447 1ltq_A Polynucleotide kinase; 91.9 0.073 2.5E-06 51.8 2.8 22 1-22 4-25 (301)
448 3nh6_A ATP-binding cassette SU 91.9 0.055 1.9E-06 52.6 1.9 22 1-22 82-103 (306)
449 2dyk_A GTP-binding protein; GT 91.8 0.081 2.8E-06 45.6 2.8 22 2-23 4-25 (161)
450 2zej_A Dardarin, leucine-rich 91.8 0.08 2.7E-06 47.2 2.8 21 2-22 5-25 (184)
451 2r6a_A DNAB helicase, replicat 91.8 0.69 2.4E-05 47.8 10.3 48 1-51 205-252 (454)
452 1tue_A Replication protein E1; 91.8 0.08 2.7E-06 47.6 2.7 23 2-24 61-83 (212)
453 2ce2_X GTPase HRAS; signaling 91.8 0.082 2.8E-06 45.7 2.8 22 2-23 6-27 (166)
454 3tui_C Methionine import ATP-b 91.8 0.072 2.5E-06 52.9 2.6 23 1-23 56-78 (366)
455 2r8r_A Sensor protein; KDPD, P 91.8 0.12 4.1E-06 47.4 3.8 105 2-117 9-129 (228)
456 4tmk_A Protein (thymidylate ki 91.8 0.28 9.6E-06 44.8 6.4 26 1-26 5-30 (213)
457 1pgv_A TMD-1, tropomodulin TMD 91.7 0.19 6.5E-06 45.1 5.0 102 270-378 41-167 (197)
458 2bbs_A Cystic fibrosis transme 91.5 0.075 2.6E-06 51.3 2.4 23 1-23 66-88 (290)
459 3con_A GTPase NRAS; structural 91.5 0.092 3.1E-06 46.9 2.9 22 2-23 24-45 (190)
460 1z2a_A RAS-related protein RAB 91.5 0.11 3.6E-06 45.2 3.2 22 2-23 8-29 (168)
461 3exa_A TRNA delta(2)-isopenten 91.4 0.087 3E-06 50.9 2.6 23 1-23 5-27 (322)
462 2wjg_A FEOB, ferrous iron tran 91.4 0.09 3.1E-06 46.8 2.7 21 2-22 10-30 (188)
463 2j37_W Signal recognition part 91.4 1 3.4E-05 47.0 10.8 35 1-37 103-137 (504)
464 3gqb_A V-type ATP synthase alp 91.3 0.16 5.5E-06 52.7 4.6 82 2-87 224-328 (578)
465 2h92_A Cytidylate kinase; ross 91.3 0.12 4.1E-06 47.5 3.5 23 1-23 5-27 (219)
466 3fvq_A Fe(3+) IONS import ATP- 91.3 0.088 3E-06 52.3 2.6 32 1-35 32-63 (359)
467 2ga8_A Hypothetical 39.9 kDa p 91.3 0.12 4E-06 51.0 3.4 24 2-25 27-50 (359)
468 2v3c_C SRP54, signal recogniti 91.2 0.089 3.1E-06 53.9 2.7 35 1-37 101-135 (432)
469 2afh_E Nitrogenase iron protei 91.2 0.21 7.1E-06 48.2 5.2 38 1-40 4-41 (289)
470 2ged_A SR-beta, signal recogni 91.2 0.1 3.6E-06 46.7 2.9 22 2-23 51-72 (193)
471 1nlf_A Regulatory protein REPA 91.1 0.092 3.1E-06 50.5 2.6 24 1-24 32-55 (279)
472 3cmw_A Protein RECA, recombina 91.1 0.53 1.8E-05 56.2 9.3 80 1-87 734-820 (1706)
473 1u8z_A RAS-related protein RAL 91.1 0.11 3.8E-06 45.0 2.9 22 2-23 7-28 (168)
474 1r8s_A ADP-ribosylation factor 91.1 0.13 4.5E-06 44.4 3.3 22 2-23 3-24 (164)
475 2j9r_A Thymidine kinase; TK1, 91.0 0.14 5E-06 46.4 3.6 106 2-118 31-141 (214)
476 3ld9_A DTMP kinase, thymidylat 91.0 0.24 8.3E-06 45.5 5.2 25 1-25 23-47 (223)
477 2ocp_A DGK, deoxyguanosine kin 91.0 0.11 3.7E-06 48.7 2.9 23 1-23 4-26 (241)
478 1svm_A Large T antigen; AAA+ f 90.9 0.1 3.6E-06 52.3 2.8 23 1-23 171-193 (377)
479 1m7b_A RND3/RHOE small GTP-bin 90.9 0.11 3.9E-06 46.1 2.8 22 2-23 10-31 (184)
480 1c1y_A RAS-related protein RAP 90.9 0.13 4.5E-06 44.5 3.2 21 2-22 6-26 (167)
481 1z47_A CYSA, putative ABC-tran 90.9 0.1 3.5E-06 51.8 2.7 32 1-35 43-74 (355)
482 1z08_A RAS-related protein RAB 90.9 0.12 4E-06 45.1 2.8 22 2-23 9-30 (170)
483 3ihw_A Centg3; RAS, centaurin, 90.8 0.12 4E-06 46.1 2.9 22 2-23 23-44 (184)
484 2q6t_A DNAB replication FORK h 90.8 1 3.5E-05 46.4 10.3 50 1-53 202-251 (444)
485 2gj8_A MNME, tRNA modification 90.8 0.12 4.3E-06 45.3 3.0 21 2-22 7-27 (172)
486 4a1f_A DNAB helicase, replicat 90.8 0.77 2.6E-05 45.1 8.9 50 1-54 48-97 (338)
487 3foz_A TRNA delta(2)-isopenten 90.8 0.12 4.1E-06 49.8 3.0 23 1-23 12-34 (316)
488 3a8t_A Adenylate isopentenyltr 90.8 0.091 3.1E-06 51.4 2.1 23 1-23 42-64 (339)
489 1ofh_A ATP-dependent HSL prote 90.8 0.13 4.4E-06 50.1 3.3 23 2-24 53-75 (310)
490 4dzz_A Plasmid partitioning pr 90.7 0.24 8.1E-06 44.9 4.9 44 1-46 3-47 (206)
491 1ek0_A Protein (GTP-binding pr 90.7 0.12 4.2E-06 44.8 2.9 22 2-23 6-27 (170)
492 1z0j_A RAB-22, RAS-related pro 90.7 0.12 4.3E-06 44.8 2.9 22 2-23 9-30 (170)
493 2bjv_A PSP operon transcriptio 90.7 0.13 4.4E-06 49.0 3.2 36 2-39 32-67 (265)
494 3t1o_A Gliding protein MGLA; G 90.7 0.14 4.7E-06 45.9 3.2 22 2-23 17-38 (198)
495 3c5c_A RAS-like protein 12; GD 90.6 0.13 4.3E-06 46.0 2.9 22 2-23 24-45 (187)
496 4edh_A DTMP kinase, thymidylat 90.6 0.16 5.4E-06 46.5 3.5 30 1-31 8-37 (213)
497 2obl_A ESCN; ATPase, hydrolase 90.5 0.12 4E-06 51.4 2.8 25 1-25 73-97 (347)
498 3rlf_A Maltose/maltodextrin im 90.5 0.11 3.9E-06 51.9 2.6 32 1-35 31-62 (381)
499 1ky3_A GTP-binding protein YPT 90.5 0.13 4.4E-06 45.3 2.9 22 2-23 11-32 (182)
500 1kao_A RAP2A; GTP-binding prot 90.5 0.15 5E-06 44.1 3.2 22 2-23 6-27 (167)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.9e-35 Score=317.29 Aligned_cols=234 Identities=16% Similarity=0.134 Sum_probs=176.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHH--HhhhcCCCCeEEEEEeCCCc--CHHHHHHHHHHHhCCccc--------CCCHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLF--EAKKEKLFDQVVFVLKSSTA--NVEKIQDEIAEQLGLELC--------KGTESERAR 68 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~--------~~~~~~~~~ 68 (629)
||+||||||+||||||+++|+ +.+++.+|++++||++++.+ +..++++.|+.+++.... ..+......
T Consensus 154 vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~ 233 (549)
T 2a5y_B 154 FLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKR 233 (549)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHH
Confidence 689999999999999999999 67888899999999999985 899999999999976421 123455678
Q ss_pred HHHHHHcCC-cEEEEEcCCCCCcchhhhhhccCCCCCCcEEEEeecccccccccc---c---------------------
Q 047700 69 TLFDQLWKE-KILIILDDIWANIDLETVGILFGGAHRGCKILLTPRYQNVLVSEM---H--------------------- 123 (629)
Q Consensus 69 ~l~~~l~~k-~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~~---~--------------------- 123 (629)
.+++.|+++ ||||||||||+.+++ .+. ..+||+||||||++.++.... .
T Consensus 234 ~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 307 (549)
T 2a5y_B 234 MICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGM 307 (549)
T ss_dssp HHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSC
T ss_pred HHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhc
Confidence 999999996 999999999998765 221 126999999999998875321 0
Q ss_pred --------------------------------CCCCChHHHHHHHHHHhhccCC-cchhhhhhhhccccccCchHHHHHH
Q 047700 124 --------------------------------SKNKPLAEWKDALQKLRSSAGK-LDALVYSSIELSYNYLIDQVVKSAF 170 (629)
Q Consensus 124 --------------------------------l~~~~~~~w~~~~~~~~~~~~~-~~~~i~~~l~~sy~~L~~~~~k~cf 170 (629)
++.+ .|+.+ +.+.+.... ....+..++.+||++||.+ +|.||
T Consensus 308 ~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~---~w~~~-~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~-lk~~f 382 (549)
T 2a5y_B 308 PMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK---TFEKM-AQLNNKLESRGLVGVECITPYSYKSLAMA-LQRCV 382 (549)
T ss_dssp CCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS---SHHHH-HHHHHHHHHHCSSTTCCCSSSSSSSHHHH-HHHHH
T ss_pred CCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc---hHHHH-HHhHHHhhcccHHHHHHHHhcccccccHH-HHHHH
Confidence 2222 13322 222111110 2467889999999999998 99999
Q ss_pred H-----------hhcccCCCCCCCHHHHHHHHhhc--ccccccccHHHHHHHHHHHHHHHhhcCcccccC--CCCceehh
Q 047700 171 L-----------LCGLLKQPYDAPVMDLLKYGMGL--GLFEGIYTMQERRDKVYALVHRLKDSCLLLDSH--SEDWFSMH 235 (629)
Q Consensus 171 l-----------~~~~fp~~~~i~~~~li~~w~a~--g~~~~~~~~~~~~~~~~~~i~~L~~~~ll~~~~--~~~~~~mh 235 (629)
+ |||+||+++.|. +++|+|+ ||+.........++.++ ++++|+++||++... ....|+||
T Consensus 383 ~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mH 457 (549)
T 2a5y_B 383 EVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKID 457 (549)
T ss_dssp HTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECC
T ss_pred hccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeC
Confidence 9 999999999998 8999999 99975321112344555 899999999998753 34679999
Q ss_pred HHHHHHHHhhhccCc
Q 047700 236 DIVRDVSISIASRDH 250 (629)
Q Consensus 236 d~~~~l~~~~~~~~~ 250 (629)
|++|++|..++..++
T Consensus 458 dlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 458 HIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHHHHHTTSCTHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999887664
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.96 E-value=6.1e-30 Score=279.96 Aligned_cols=224 Identities=19% Similarity=0.150 Sum_probs=167.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe-EEEEEeCCCcCHHHHHHHHHHHhCC---ccc--CC-------CHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQ-VVFVLKSSTANVEKIQDEIAEQLGL---ELC--KG-------TESERA 67 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~~---~~~--~~-------~~~~~~ 67 (629)
||+|+||||+||||||+.+|++.+++.+|+. ++||++++.++...++..|+..++. ... .. +.++..
T Consensus 152 VV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~ 231 (1221)
T 1vt4_I 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231 (1221)
T ss_dssp EEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHH
T ss_pred EEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHH
Confidence 5899999999999999999999877778986 8999999999998888888775432 111 00 122345
Q ss_pred HHHHHHH---cCCcEEEEEcCCCCCcchhhhhhccCCCCCCcEEEEeecccccccccc-----cCC------CCC-hHHH
Q 047700 68 RTLFDQL---WKEKILIILDDIWANIDLETVGILFGGAHRGCKILLTPRYQNVLVSEM-----HSK------NKP-LAEW 132 (629)
Q Consensus 68 ~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~~-----~l~------~~~-~~~w 132 (629)
..+++.| .+||+||||||||+.++|+.+. +||+||||||++.++.... .+. ..+ .+.|
T Consensus 232 e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~ 304 (1221)
T 1vt4_I 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304 (1221)
T ss_dssp HHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHH
T ss_pred HHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHH
Confidence 5666665 6899999999999988887652 6899999999999873111 011 222 2223
Q ss_pred HHHHHHH--------------------------hhccC-------CcchhhhhhhhccccccCchHH-HHHHHhhcccCC
Q 047700 133 KDALQKL--------------------------RSSAG-------KLDALVYSSIELSYNYLIDQVV-KSAFLLCGLLKQ 178 (629)
Q Consensus 133 ~~~~~~~--------------------------~~~~~-------~~~~~i~~~l~~sy~~L~~~~~-k~cfl~~~~fp~ 178 (629)
+-....+ ..... .....+..++++||+.||++ . |.||+|||+||+
T Consensus 305 eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPe 383 (1221)
T 1vt4_I 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPP 383 (1221)
T ss_dssp HHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCT
T ss_pred HHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCC
Confidence 2211111 00000 01356889999999999999 7 999999999999
Q ss_pred CCCCCHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHhhcCcccccCCCCceehhHHHHHHHH
Q 047700 179 PYDAPVMDLLKYGMGLGLFEGIYTMQERRDKVYALVHRLKDSCLLLDSHSEDWFSMHDIVRDVSI 243 (629)
Q Consensus 179 ~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~i~~L~~~~ll~~~~~~~~~~mhd~~~~l~~ 243 (629)
++.|.+..++.+|+++|. +.+.+++++|+++||++..+....|+|||++++++.
T Consensus 384 d~~I~~elLa~LW~aeGe-----------edAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 384 SAHIPTILLSLIWFDVIK-----------SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp TSCEEHHHHHHHHCSSCS-----------HHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred CCCCCHHHHHHHhcCCCH-----------HHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 999999999999999871 135668999999999987655678999999999663
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=1.1e-26 Score=277.79 Aligned_cols=228 Identities=21% Similarity=0.280 Sum_probs=173.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh-cCCC-CeEEEEEeCCCcC--HHHHHHHHHHHhCCcc-----cCCCHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK-EKLF-DQVVFVLKSSTAN--VEKIQDEIAEQLGLEL-----CKGTESERARTLF 71 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~-----~~~~~~~~~~~l~ 71 (629)
+|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ....++.++..+.... ...+.++....++
T Consensus 149 ~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 228 (1249)
T 3sfz_A 149 WVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLR 228 (1249)
T ss_dssp EEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHH
Confidence 5899999999999999999998654 3445 7788999998644 4555677888776432 1234566778888
Q ss_pred HHHcCC--cEEEEEcCCCCCcchhhhhhccCCCCCCcEEEEeeccccccccccc--------------------------
Q 047700 72 DQLWKE--KILIILDDIWANIDLETVGILFGGAHRGCKILLTPRYQNVLVSEMH-------------------------- 123 (629)
Q Consensus 72 ~~l~~k--~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~~~-------------------------- 123 (629)
..+.++ |+||||||||+..+|+.+ ++||+||||||++.++...+.
T Consensus 229 ~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~ 301 (1249)
T 3sfz_A 229 VLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM 301 (1249)
T ss_dssp HHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTS
T ss_pred HHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCC
Confidence 888877 999999999988777554 568999999999988732111
Q ss_pred -----------------------------CCCCChHHHHHHHHHHhhccC--------CcchhhhhhhhccccccCchHH
Q 047700 124 -----------------------------SKNKPLAEWKDALQKLRSSAG--------KLDALVYSSIELSYNYLIDQVV 166 (629)
Q Consensus 124 -----------------------------l~~~~~~~w~~~~~~~~~~~~--------~~~~~i~~~l~~sy~~L~~~~~ 166 (629)
++.+. ..|+.+++.+..... ...+.+..++.+||+.||++ .
T Consensus 302 ~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~ 379 (1249)
T 3sfz_A 302 KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-I 379 (1249)
T ss_dssp CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-T
T ss_pred ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-H
Confidence 22222 246666666532221 12256899999999999999 9
Q ss_pred HHHHHhhcccCCCCCCCHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHhhcCcccccCC--CCceehhHHHHHHHHh
Q 047700 167 KSAFLLCGLLKQPYDAPVMDLLKYGMGLGLFEGIYTMQERRDKVYALVHRLKDSCLLLDSHS--EDWFSMHDIVRDVSIS 244 (629)
Q Consensus 167 k~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~i~~L~~~~ll~~~~~--~~~~~mhd~~~~l~~~ 244 (629)
|.||+||++||+++.|++..++.+|.+++ +.+++++++|++++|++.... ...|+||+++|+++..
T Consensus 380 ~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~ 447 (1249)
T 3sfz_A 380 KDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTE 447 (1249)
T ss_dssp HHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHH
T ss_pred HHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHh
Confidence 99999999999999999999999997752 345667999999999986532 2359999999999998
Q ss_pred hhccC
Q 047700 245 IASRD 249 (629)
Q Consensus 245 ~~~~~ 249 (629)
.+.++
T Consensus 448 ~~~~~ 452 (1249)
T 3sfz_A 448 KNRSQ 452 (1249)
T ss_dssp HTGGG
T ss_pred hhhHH
Confidence 87654
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=4e-24 Score=218.63 Aligned_cols=287 Identities=19% Similarity=0.256 Sum_probs=175.4
Q ss_pred ccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCcccc
Q 047700 268 VLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKL 347 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L 347 (629)
.+++++.|++.++.+..++. +.. +++|++|++++|.++.+|. +..+++|++|++++|.+..++.+..+++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~-------~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L 112 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEY-------LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNL 112 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGG-------CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred hcccccEEEEeCCccccchh-hhh-------cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcC
Confidence 45667777777777766653 222 6777777777777776665 67777777777777777776667777777
Q ss_pred ceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCcc
Q 047700 348 ENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKV 427 (629)
Q Consensus 348 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~ 427 (629)
++|++++|.++.+|. +..+++|++|++++|.....++. +..+++|++|++++|.+..... ...
T Consensus 113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--------------~~~ 175 (347)
T 4fmz_A 113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--------------IAN 175 (347)
T ss_dssp SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--------------GGG
T ss_pred CEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--------------hcc
Confidence 777777777777665 66777777777777765555544 6777777777777776542111 123
Q ss_pred ccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhh-----------hccccCceeee
Q 047700 428 ISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE-----------LRQFIQRDIFK 496 (629)
Q Consensus 428 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~-----------~~~~~~L~~~~ 496 (629)
+++|+.|++++|.+..+.. ...+++|+.|.+.++......+ +..+++|+.|. ...+++|+.
T Consensus 176 l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~-- 247 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTW-- 247 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCE--
T ss_pred CCCCCEEEccCCccccccc----ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCE--
Confidence 4566666666666553321 2344555566555543322111 22223333322 345667777
Q ss_pred EEEecCCCCccccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceeccCCCeeecCC
Q 047700 497 WRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPS 576 (629)
Q Consensus 497 L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~ 576 (629)
|++++| .++.+ ..+..+++|+.|++++|. +..++... .+++|+.|++++|.-....+. ....+|+
T Consensus 248 L~l~~n-~l~~~---~~~~~l~~L~~L~l~~n~-l~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~--~l~~l~~ 312 (347)
T 4fmz_A 248 LEIGTN-QISDI---NAVKDLTKLKMLNVGSNQ-ISDISVLN--------NLSQLNSLFLNNNQLGNEDME--VIGGLTN 312 (347)
T ss_dssp EECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCCCGGGG--------GCTTCSEEECCSSCCCGGGHH--HHHTCTT
T ss_pred EECCCC-ccCCC---hhHhcCCCcCEEEccCCc-cCCChhhc--------CCCCCCEEECcCCcCCCcChh--Hhhcccc
Confidence 777775 44443 235667777777777775 44443221 477777777777643322222 3456777
Q ss_pred CceeeecCCCCccccCCCCCCchhhHHhh
Q 047700 577 LEDLFVIDCPKVMIFSCGVSSTPRLREVR 605 (629)
Q Consensus 577 L~~L~i~~c~~L~~lp~~~~~l~~L~~l~ 605 (629)
|+.|++++|+ +..+++ +..+++|++++
T Consensus 313 L~~L~L~~n~-l~~~~~-~~~l~~L~~L~ 339 (347)
T 4fmz_A 313 LTTLFLSQNH-ITDIRP-LASLSKMDSAD 339 (347)
T ss_dssp CSEEECCSSS-CCCCGG-GGGCTTCSEES
T ss_pred CCEEEccCCc-cccccC-hhhhhccceee
Confidence 7777777776 444444 56677777766
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.91 E-value=4e-24 Score=234.67 Aligned_cols=224 Identities=20% Similarity=0.260 Sum_probs=162.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh-cCCC-CeEEEEEeCCCcCHHHHHHHH---HHHhCCc-----ccCCCHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK-EKLF-DQVVFVLKSSTANVEKIQDEI---AEQLGLE-----LCKGTESERARTL 70 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~~i---~~~l~~~-----~~~~~~~~~~~~l 70 (629)
+|+|+||||+||||||+.+|++.+. ..+| ++++||+++.. +...+...+ +..++.. ....+.+.....+
T Consensus 149 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l 227 (591)
T 1z6t_A 149 WVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRL 227 (591)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHH
Confidence 5899999999999999999998765 5679 58999999775 333444433 4455421 1223455667778
Q ss_pred HHHHcC--CcEEEEEcCCCCCcchhhhhhccCCCCCCcEEEEeeccccccccccc-------------------------
Q 047700 71 FDQLWK--EKILIILDDIWANIDLETVGILFGGAHRGCKILLTPRYQNVLVSEMH------------------------- 123 (629)
Q Consensus 71 ~~~l~~--k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~~~~------------------------- 123 (629)
.+.+.+ +++||||||||+..+++.+ +.|++||||||++.++....+
T Consensus 228 ~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~ 300 (591)
T 1z6t_A 228 RILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN 300 (591)
T ss_dssp HHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHT
T ss_pred HHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhC
Confidence 887875 7999999999976554332 568999999999986632111
Q ss_pred ------------------------------CCCCChHHHHHHHHHHhhccC--------CcchhhhhhhhccccccCchH
Q 047700 124 ------------------------------SKNKPLAEWKDALQKLRSSAG--------KLDALVYSSIELSYNYLIDQV 165 (629)
Q Consensus 124 ------------------------------l~~~~~~~w~~~~~~~~~~~~--------~~~~~i~~~l~~sy~~L~~~~ 165 (629)
++.. ...|+.+++.+..... .....+..++..||+.||++
T Consensus 301 ~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~-~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~- 378 (591)
T 1z6t_A 301 MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDF-PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED- 378 (591)
T ss_dssp SCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS-TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-
T ss_pred CCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcC-chhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-
Confidence 1111 1236555555532211 12346788999999999999
Q ss_pred HHHHHHhhcccCCCCCCCHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHhhcCcccccC--CCCceehhHHHHHHHH
Q 047700 166 VKSAFLLCGLLKQPYDAPVMDLLKYGMGLGLFEGIYTMQERRDKVYALVHRLKDSCLLLDSH--SEDWFSMHDIVRDVSI 243 (629)
Q Consensus 166 ~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~i~~L~~~~ll~~~~--~~~~~~mhd~~~~l~~ 243 (629)
.|.||.++|+||.++.|+...+...|.++ .+ .+.+++++|+++++++... ....|+||+++++++.
T Consensus 379 ~~~~l~~la~f~~~~~i~~~~l~~l~~~~--------~~----~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~ 446 (591)
T 1z6t_A 379 IKDYYTDLSILQKDVKVPTKVLCILWDME--------TE----EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLT 446 (591)
T ss_dssp THHHHHHGGGCCTTCCEEHHHHHHHHTCC--------HH----HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHH
T ss_pred HHHHHHHccccCCCCccCHHHHHHHhccC--------HH----HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHH
Confidence 89999999999999999999999999664 12 3456789999999997542 3347999999999998
Q ss_pred hhh
Q 047700 244 SIA 246 (629)
Q Consensus 244 ~~~ 246 (629)
...
T Consensus 447 ~~~ 449 (591)
T 1z6t_A 447 EKN 449 (591)
T ss_dssp HHT
T ss_pred hhh
Confidence 774
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=2e-23 Score=216.99 Aligned_cols=292 Identities=17% Similarity=0.207 Sum_probs=198.9
Q ss_pred ccccceEEeccCCCCCCCCCCC-CCCCcchhccCCccEEEecCCcccccc-hhhhcccCCcEEEcCCcCCCC--cccccC
Q 047700 268 VLKNCSAVSLNDIEIGVLPKGL-EYPQLEFFWMSKLRGLALSKMQLLSLP-QSVHLLSNLQTLCLDQCVLGD--ISIIGN 343 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~~lp~~~-~~~~l~~l~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~i~~ 343 (629)
.+++++.+++.++.+..+|... .. +++|++|++++|.++.++ ..+..+++|++|++++|.+.. +..+++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~-------l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDS-------FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHH-------CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCceEEEecCCchhhCChhHhcc-------cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 4577888888888888887642 21 678888888888888665 368888888888888888877 345788
Q ss_pred ccccceeeccCCCCccCchhh-hcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCccccccccc
Q 047700 344 LEKLENLSLVDSDIEWLPNEI-GELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATF 422 (629)
Q Consensus 344 l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 422 (629)
+++|++|++++|.++.+|..+ +++++|++|++++| .+..++...++++++|+.|++++|.+....
T Consensus 116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------- 181 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD------------- 181 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBCC-------------
T ss_pred CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCccc-------------
Confidence 888888888888888888764 78888888888887 555665555788888888888888765321
Q ss_pred ccCccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhh-----------hccccC
Q 047700 423 VFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE-----------LRQFIQ 491 (629)
Q Consensus 423 ~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~-----------~~~~~~ 491 (629)
...+++|+.|++++|.+..+. ..++|++|++.++........ ..++|+.|. ...+++
T Consensus 182 --~~~l~~L~~L~l~~n~l~~~~-------~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~l~~l~~ 249 (390)
T 3o6n_A 182 --LSLIPSLFHANVSYNLLSTLA-------IPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDTAWLLNYPG 249 (390)
T ss_dssp --GGGCTTCSEEECCSSCCSEEE-------CCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCCGGGGGCTT
T ss_pred --cccccccceeecccccccccC-------CCCcceEEECCCCeeeecccc---ccccccEEECCCCCCcccHHHcCCCC
Confidence 122344555555555444221 112344444444332221110 011222221 456788
Q ss_pred ceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceeccCCCe
Q 047700 492 RDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCT 571 (629)
Q Consensus 492 L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 571 (629)
|+. |+++++ .++...+ ..+..+++|+.|++++|. +..++.... .+++|+.|+++++ .+..++. ..
T Consensus 250 L~~--L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~-------~l~~L~~L~L~~n-~l~~~~~--~~ 314 (390)
T 3o6n_A 250 LVE--VDLSYN-ELEKIMY-HPFVKMQRLERLYISNNR-LVALNLYGQ-------PIPTLKVLDLSHN-HLLHVER--NQ 314 (390)
T ss_dssp CSE--EECCSS-CCCEEES-GGGTTCSSCCEEECCSSC-CCEEECSSS-------CCTTCCEEECCSS-CCCCCGG--GH
T ss_pred ccE--EECCCC-cCCCcCh-hHccccccCCEEECCCCc-CcccCcccC-------CCCCCCEEECCCC-cceecCc--cc
Confidence 899 999885 4555433 456788999999999886 555554433 5899999999986 6777776 57
Q ss_pred eecCCCceeeecCCCCccccCCCCCCchhhHHhhhccCCC
Q 047700 572 FKFPSLEDLFVIDCPKVMIFSCGVSSTPRLREVRKNWGLD 611 (629)
Q Consensus 572 ~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~l~~~~~~~ 611 (629)
..+++|++|++++|+ +..+| +..+++|++|. ..+++
T Consensus 315 ~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~-l~~N~ 350 (390)
T 3o6n_A 315 PQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLT-LSHND 350 (390)
T ss_dssp HHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEE-CCSSC
T ss_pred cccCcCCEEECCCCc-cceeC--chhhccCCEEE-cCCCC
Confidence 788999999999886 55554 67778888887 54544
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=4.2e-23 Score=233.10 Aligned_cols=329 Identities=16% Similarity=0.109 Sum_probs=194.1
Q ss_pred EeCCeeeccccccccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCccc-ccchhhhcccCCcEEEcCCc
Q 047700 255 VRNDVLVGWLNNDVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLL-SLPQSVHLLSNLQTLCLDQC 333 (629)
Q Consensus 255 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~ 333 (629)
.+++.+.........++++.|++.+|.+...++.+.. +++|++|++++|.++ .+|..+..+++|++|++++|
T Consensus 185 Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~-------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 185 ISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGD-------CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257 (768)
T ss_dssp CCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTT-------CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS
T ss_pred CCCCcccccCCcccCCcCCEEECcCCcCCCCCccccc-------CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCC
Confidence 3344444334445677888888888887664433433 677777777777776 55667777777777777777
Q ss_pred CCCC-cccccCccccceeeccCCCCc-cCchhhhcC-ccccEEeecCCCCCCccChhhhhcCccCceEEecccccccccc
Q 047700 334 VLGD-ISIIGNLEKLENLSLVDSDIE-WLPNEIGEL-TQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFE 410 (629)
Q Consensus 334 ~l~~-~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l-~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~ 410 (629)
.+.. ++.. .+++|++|++++|.++ .+|..+..+ ++|++|++++|...+.+|.. ++++++|++|++++|.+.+..+
T Consensus 258 ~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip 335 (768)
T 3rgz_A 258 QFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELP 335 (768)
T ss_dssp CCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEECC
T ss_pred cccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCcCC
Confidence 6654 2222 4555555555555544 444444432 55555555554332233333 4455555555555544332111
Q ss_pred CC---Ccccccc-------cccccCccc---c-CcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeecccc
Q 047700 411 GK---EGGAEAS-------ATFVFPKVI---S-NLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQ 476 (629)
Q Consensus 411 ~~---~~~~~~~-------~~~~~p~~l---~-~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 476 (629)
.. ....+.. ....+|..+ . +|+.|+++.|.+.......+....+++|++|.+.++......+..+.
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 415 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415 (768)
T ss_dssp HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG
T ss_pred HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh
Confidence 00 0000000 001233333 2 67777777776653221112112245677777777655444555566
Q ss_pred ccCchhhhh-------------hccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceeccccccccc
Q 047700 477 RFHNMEKLE-------------LRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEE 543 (629)
Q Consensus 477 ~~~~L~~L~-------------~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 543 (629)
.+++|+.|. +..+++|+. |++++|.....++ ..+..+++|+.|++++|.....++....
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~--L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~l~---- 487 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRD--LKLWLNMLEGEIP--QELMYVKTLETLILDFNDLTGEIPSGLS---- 487 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCE--EECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGG----
T ss_pred cCCCCCEEECcCCcccCcccHHHhcCCCCCE--EECCCCcccCcCC--HHHcCCCCceEEEecCCcccCcCCHHHh----
Confidence 666666665 455677888 8888865443433 3466788888888888875555555443
Q ss_pred cccccccccccccccccccceeccCCCeeecCCCceeeecCCCCccccCCCCCCchhhHHhh
Q 047700 544 DEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKVMIFSCGVSSTPRLREVR 605 (629)
Q Consensus 544 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~l~ 605 (629)
.+++|+.|++++|.-...+|. ..+.+++|+.|++++|.-...+|..+..+++|+.|+
T Consensus 488 ---~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 488 ---NCTNLNWISLSNNRLTGEIPK--WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp ---GCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred ---cCCCCCEEEccCCccCCcCCh--HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 578888888888765556666 667788888888888877667887788888888887
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=9.7e-23 Score=217.81 Aligned_cols=297 Identities=19% Similarity=0.134 Sum_probs=208.1
Q ss_pred cccccceEEeccCCCCCCCCC-CCCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEcCCcCCCC-c-cccc
Q 047700 267 DVLKNCSAVSLNDIEIGVLPK-GLEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQCVLGD-I-SIIG 342 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~-~~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~-~-~~i~ 342 (629)
...+.++.|++++|.+..++. .+.. +++|++|+|++|.+..+ |..+..+++|++|++++|.+.. + ..++
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~-------l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 101 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFAS-------FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTT-------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSST
T ss_pred CCCCCCcEEECCCCccceECHhHccC-------CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccccc
Confidence 345678888888888877653 2332 78888888888888765 6678888888888888888877 3 3467
Q ss_pred CccccceeeccCCCCccC-chhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccc
Q 047700 343 NLEKLENLSLVDSDIEWL-PNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASAT 421 (629)
Q Consensus 343 ~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 421 (629)
++++|++|++++|.++.+ |..+.++++|++|++++| .+..++...+.++++|+.|++++|.+......
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------- 170 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE---------- 170 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSSCCHH----------
T ss_pred CCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCcccChh----------
Confidence 888888888888888755 456778888888888887 55555544478888888888888865431110
Q ss_pred cccCccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEec
Q 047700 422 FVFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSY 501 (629)
Q Consensus 422 ~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~ 501 (629)
....+.+|+.|++++|.+..+....+ ..+++|+.|++.++......+... ....+|+. |++++
T Consensus 171 --~l~~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~-----------~~~~~L~~--L~l~~ 233 (477)
T 2id5_A 171 --ALSHLHGLIVLRLRHLNINAIRDYSF--KRLYRLKVLEISHWPYLDTMTPNC-----------LYGLNLTS--LSITH 233 (477)
T ss_dssp --HHTTCTTCCEEEEESCCCCEECTTCS--CSCTTCCEEEEECCTTCCEECTTT-----------TTTCCCSE--EEEES
T ss_pred --HhcccCCCcEEeCCCCcCcEeChhhc--ccCcccceeeCCCCccccccCccc-----------ccCccccE--EECcC
Confidence 11235778888888887775543222 456788888888776655443321 22348888 99999
Q ss_pred CCCCccccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceeccCCCeeecCCCceee
Q 047700 502 CKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLF 581 (629)
Q Consensus 502 c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~ 581 (629)
| .++.++ ...+..+++|+.|++++|. +..++.... ..+++|+.|++.++ .+..+... ....+++|+.|+
T Consensus 234 n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~------~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~ 302 (477)
T 2id5_A 234 C-NLTAVP-YLAVRHLVYLRFLNLSYNP-ISTIEGSML------HELLRLQEIQLVGG-QLAVVEPY-AFRGLNYLRVLN 302 (477)
T ss_dssp S-CCCSCC-HHHHTTCTTCCEEECCSSC-CCEECTTSC------TTCTTCCEEECCSS-CCSEECTT-TBTTCTTCCEEE
T ss_pred C-cccccC-HHHhcCccccCeeECCCCc-CCccChhhc------cccccCCEEECCCC-ccceECHH-HhcCcccCCEEE
Confidence 5 566664 3567889999999999987 445543322 25899999999985 45555321 566789999999
Q ss_pred ecCCCCccccCCC-CCCchhhHHhhhccCCC
Q 047700 582 VIDCPKVMIFSCG-VSSTPRLREVRKNWGLD 611 (629)
Q Consensus 582 i~~c~~L~~lp~~-~~~l~~L~~l~~~~~~~ 611 (629)
+++| ++..+|.. +..+++|++|. ..+++
T Consensus 303 L~~N-~l~~~~~~~~~~l~~L~~L~-l~~N~ 331 (477)
T 2id5_A 303 VSGN-QLTTLEESVFHSVGNLETLI-LDSNP 331 (477)
T ss_dssp CCSS-CCSCCCGGGBSCGGGCCEEE-CCSSC
T ss_pred CCCC-cCceeCHhHcCCCcccCEEE-ccCCC
Confidence 9988 46666654 67888888887 44433
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1.8e-23 Score=230.77 Aligned_cols=320 Identities=13% Similarity=0.141 Sum_probs=189.9
Q ss_pred cccccceEEeccCCCCCC------------------CCCCCCCCCcchhccCCccEEEecCCccc-ccchhhhcccCCcE
Q 047700 267 DVLKNCSAVSLNDIEIGV------------------LPKGLEYPQLEFFWMSKLRGLALSKMQLL-SLPQSVHLLSNLQT 327 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~------------------lp~~~~~~~l~~l~~~~L~~L~l~~~~~~-~lp~~l~~l~~L~~ 327 (629)
..+++++.|++++|.+.. +|..+.+.+ +++|++|++++|.+. .+|..++++++|++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~-----l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN-----LKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG-----CTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc-----cCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 456788888888888877 777665111 777888888887765 66777778888888
Q ss_pred EEcCCcC-CCC---cccccCc------cccceeeccCCCCccCch--hhhcCccccEEeecCCCCCCccChhhhhcCccC
Q 047700 328 LCLDQCV-LGD---ISIIGNL------EKLENLSLVDSDIEWLPN--EIGELTQLRLLDLSSCWNLKVIPPNVISKLTQL 395 (629)
Q Consensus 328 L~l~~~~-l~~---~~~i~~l------~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L 395 (629)
|++++|. ++. |..++++ ++|++|++++|+++.+|. .++++++|++|++++|...+.+| . ++.+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCC
Confidence 8888876 653 4556655 778888888887777777 77778888888887774333677 3 7777777
Q ss_pred ceEEeccccccccccCCCcc--c-ccc------cccccCccc-----cCcceEEccCcchhhhccccCC-----hhhhcc
Q 047700 396 EELYMGNTFVKWEFEGKEGG--A-EAS------ATFVFPKVI-----SNLEELKLGGKDITMICQDHLP-----KHLFQN 456 (629)
Q Consensus 396 ~~L~l~~~~~~~~~~~~~~~--~-~~~------~~~~~p~~l-----~~L~~L~L~~~~~~~~~~~~~~-----~~~~~~ 456 (629)
+.|++++|.+. ..+..... . +.. .+..+|..+ .+|+.|++++|.+.......++ ...+++
T Consensus 356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 77777777654 22111000 0 000 111233332 2456666666666533221121 002346
Q ss_pred cceeeeccCCCCceeeccccccCchhhhh----------h---c-------cccCceeeeEEEecCCCCccccchHHHhc
Q 047700 457 LKSLEVVSDKSDNFSIGSLQRFHNMEKLE----------L---R-------QFIQRDIFKWRVSYCKRLKNLVSSFTAKS 516 (629)
Q Consensus 457 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~----------~---~-------~~~~L~~~~L~l~~c~~l~~l~~~~~l~~ 516 (629)
|+.|.++++.........+..+++|+.|. . . .+++|+. |+++++ .++.++.......
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~--L~Ls~N-~l~~lp~~~~~~~ 511 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS--IDLRFN-KLTKLSDDFRATT 511 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCE--EECCSS-CCCBCCGGGSTTT
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccE--EECcCC-cCCccChhhhhcc
Confidence 66666666544432222223345555554 0 0 1126777 777774 4445542111136
Q ss_pred ccCcceEEEecccccceecccccccccccccccccccccccc------ccccceeccCCCeeecCCCceeeecCCCCccc
Q 047700 517 LVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLEC------LESLTSFCSGNCTFKFPSLEDLFVIDCPKVMI 590 (629)
Q Consensus 517 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~ 590 (629)
+++|+.|++++|... .+|.... .+++|+.|++++ +.-...+|. ....+++|+.|++++|.- ..
T Consensus 512 l~~L~~L~Ls~N~l~-~ip~~~~-------~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l-~~ 580 (636)
T 4eco_A 512 LPYLVGIDLSYNSFS-KFPTQPL-------NSSTLKGFGIRNQRDAQGNRTLREWPE--GITLCPSLTQLQIGSNDI-RK 580 (636)
T ss_dssp CTTCCEEECCSSCCS-SCCCGGG-------GCSSCCEEECCSCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSCC-CB
T ss_pred CCCcCEEECCCCCCC-CcChhhh-------cCCCCCEEECCCCcccccCcccccChH--HHhcCCCCCEEECCCCcC-Cc
Confidence 777777777777633 3544333 477777777743 333445555 566677888888877764 77
Q ss_pred cCCCCCCchhhHHhhhccCCC
Q 047700 591 FSCGVSSTPRLREVRKNWGLD 611 (629)
Q Consensus 591 lp~~~~~l~~L~~l~~~~~~~ 611 (629)
+|..+. ++|++|+ ..+++
T Consensus 581 ip~~~~--~~L~~L~-Ls~N~ 598 (636)
T 4eco_A 581 VNEKIT--PNISVLD-IKDNP 598 (636)
T ss_dssp CCSCCC--TTCCEEE-CCSCT
T ss_pred cCHhHh--CcCCEEE-CcCCC
Confidence 777655 6777777 44444
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=2.4e-22 Score=213.85 Aligned_cols=301 Identities=18% Similarity=0.238 Sum_probs=167.0
Q ss_pred ccccccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccC
Q 047700 264 LNNDVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGN 343 (629)
Q Consensus 264 ~~~~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~ 343 (629)
+....+++++.|++++|.+..++. +.. +++|++|++++|.+..++. +..+++|++|++++|.+...+.+.+
T Consensus 62 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~-------l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (466)
T 1o6v_A 62 DGVEYLNNLTQINFSNNQLTDITP-LKN-------LTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKN 132 (466)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG-GTT-------CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTT
T ss_pred cchhhhcCCCEEECCCCccCCchh-hhc-------cccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChHHcC
Confidence 334456778888888877777665 222 6777777777777776665 7777777777777777777555777
Q ss_pred ccccceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccc----
Q 047700 344 LEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEAS---- 419 (629)
Q Consensus 344 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~---- 419 (629)
+++|++|++++|.++.+|. ++.+++|+.|++++ .+...+. ++++++|+.|++++|.+.....-.....+..
T Consensus 133 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 207 (466)
T ss_dssp CTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred CCCCCEEECCCCccCCChh-hccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCCCChhhccCCCCCEEEec
Confidence 7777777777776666553 44555555554432 1222222 4445555555555444321100000000000
Q ss_pred --ccccc--CccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhh----------
Q 047700 420 --ATFVF--PKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE---------- 485 (629)
Q Consensus 420 --~~~~~--p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~---------- 485 (629)
.+..+ ...+++|+.|++++|.+..+. ....+++|+.|++.++......+ +..+++|+.|.
T Consensus 208 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 281 (466)
T 1o6v_A 208 NNQISDITPLGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 281 (466)
T ss_dssp SSCCCCCGGGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG
T ss_pred CCcccccccccccCCCCEEECCCCCcccch----hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc
Confidence 00000 112355666666666555331 12345566666666554332211 33444444443
Q ss_pred -hccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccce
Q 047700 486 -LRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTS 564 (629)
Q Consensus 486 -~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 564 (629)
...+++|+. |++++| .++.+++ ++.+++|+.|++++|. +..++... .+++|+.|++++| .+..
T Consensus 282 ~~~~l~~L~~--L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~--------~l~~L~~L~l~~n-~l~~ 345 (466)
T 1o6v_A 282 PLAGLTALTN--LELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDISPVS--------SLTKLQRLFFYNN-KVSD 345 (466)
T ss_dssp GGTTCTTCSE--EECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCGGGG--------GCTTCCEEECCSS-CCCC
T ss_pred cccCCCccCe--EEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCchhhc--------cCccCCEeECCCC-ccCC
Confidence 345567777 777774 3444432 5667777777777775 33333221 4777888888775 4555
Q ss_pred eccCCCeeecCCCceeeecCCCCccccCCCCCCchhhHHhh
Q 047700 565 FCSGNCTFKFPSLEDLFVIDCPKVMIFSCGVSSTPRLREVR 605 (629)
Q Consensus 565 ~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~l~ 605 (629)
++. ...+++|+.|++++|+-....| +..+++|+++.
T Consensus 346 ~~~---l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 381 (466)
T 1o6v_A 346 VSS---LANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381 (466)
T ss_dssp CGG---GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEE
T ss_pred chh---hccCCCCCEEeCCCCccCccch--hhcCCCCCEEe
Confidence 533 5667888888887776433333 67777777776
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=6.2e-23 Score=230.52 Aligned_cols=319 Identities=13% Similarity=0.131 Sum_probs=177.5
Q ss_pred cccccceEEeccCCCCCC------------------CCCCCCCCCcchhccCCccEEEecCCccc-ccchhhhcccCCcE
Q 047700 267 DVLKNCSAVSLNDIEIGV------------------LPKGLEYPQLEFFWMSKLRGLALSKMQLL-SLPQSVHLLSNLQT 327 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~------------------lp~~~~~~~l~~l~~~~L~~L~l~~~~~~-~lp~~l~~l~~L~~ 327 (629)
..+++++.|++++|.+.. +|..+.+.+ +++|++|+|++|.+. .+|..++++++|++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~-----L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN-----LKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG-----CTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc-----CCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 456788899999888877 777664111 677777777777654 66777777777777
Q ss_pred EEcCCcC-CCC---cccccCcc-------ccceeeccCCCCccCch--hhhcCccccEEeecCCCCCCccChhhhhcCcc
Q 047700 328 LCLDQCV-LGD---ISIIGNLE-------KLENLSLVDSDIEWLPN--EIGELTQLRLLDLSSCWNLKVIPPNVISKLTQ 394 (629)
Q Consensus 328 L~l~~~~-l~~---~~~i~~l~-------~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~ 394 (629)
|++++|. +.. |..+++++ +|++|++++|.++.+|. .++++++|++|++++| .+..+| . ++++++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-hcCCCc
Confidence 7777776 553 44455444 77777777777777776 6777777777777776 444666 2 677777
Q ss_pred CceEEeccccccccccCCCcc--c-ccc------cccccCccc-----cCcceEEccCcchhhhccc---cCChhhhccc
Q 047700 395 LEELYMGNTFVKWEFEGKEGG--A-EAS------ATFVFPKVI-----SNLEELKLGGKDITMICQD---HLPKHLFQNL 457 (629)
Q Consensus 395 L~~L~l~~~~~~~~~~~~~~~--~-~~~------~~~~~p~~l-----~~L~~L~L~~~~~~~~~~~---~~~~~~~~~L 457 (629)
|+.|++++|.+. ..+..... . +.. .+..+|..+ .+|+.|++++|.+...... .+.....++|
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 777777777654 22211000 0 000 111233222 1244555555544322110 0000012245
Q ss_pred ceeeeccCCCCceeeccccccCchhhhh----------h----------ccccCceeeeEEEecCCCCccccchHHHhcc
Q 047700 458 KSLEVVSDKSDNFSIGSLQRFHNMEKLE----------L----------RQFIQRDIFKWRVSYCKRLKNLVSSFTAKSL 517 (629)
Q Consensus 458 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~----------~----------~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l 517 (629)
+.|+++++.........+..+++|+.|. . ..+++|+. |+|++| .++.++.......+
T Consensus 676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~--L~Ls~N-~L~~lp~~l~~~~l 752 (876)
T 4ecn_A 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT--IDLRFN-KLTSLSDDFRATTL 752 (876)
T ss_dssp EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCE--EECCSS-CCCCCCGGGSTTTC
T ss_pred CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccE--EECCCC-CCccchHHhhhccC
Confidence 5555554433321111112333444433 0 11236777 777775 44555431111367
Q ss_pred cCcceEEEecccccceeccccccccccccccccccccccccc------cccceeccCCCeeecCCCceeeecCCCCcccc
Q 047700 518 VHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECL------ESLTSFCSGNCTFKFPSLEDLFVIDCPKVMIF 591 (629)
Q Consensus 518 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~------~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~l 591 (629)
++|+.|++++|. +..+|.... .+++|+.|+|+++ .-...+|. ....+++|+.|++++|.- ..+
T Consensus 753 ~~L~~L~Ls~N~-L~~lp~~l~-------~L~~L~~L~Ls~N~~ls~N~l~~~ip~--~l~~L~~L~~L~Ls~N~L-~~I 821 (876)
T 4ecn_A 753 PYLSNMDVSYNC-FSSFPTQPL-------NSSQLKAFGIRHQRDAEGNRILRQWPT--GITTCPSLIQLQIGSNDI-RKV 821 (876)
T ss_dssp TTCCEEECCSSC-CSSCCCGGG-------GCTTCCEEECCCCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSCC-CBC
T ss_pred CCcCEEEeCCCC-CCccchhhh-------cCCCCCEEECCCCCCcccccccccChH--HHhcCCCCCEEECCCCCC-Ccc
Confidence 777777777776 333543332 4777777777652 23344554 556677777777777754 777
Q ss_pred CCCCCCchhhHHhhhccCCC
Q 047700 592 SCGVSSTPRLREVRKNWGLD 611 (629)
Q Consensus 592 p~~~~~l~~L~~l~~~~~~~ 611 (629)
|..+. ++|+.|+ +.+|+
T Consensus 822 p~~l~--~~L~~Ld-Ls~N~ 838 (876)
T 4ecn_A 822 DEKLT--PQLYILD-IADNP 838 (876)
T ss_dssp CSCCC--SSSCEEE-CCSCT
T ss_pred CHhhc--CCCCEEE-CCCCC
Confidence 77654 4677666 44444
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=4.9e-22 Score=203.07 Aligned_cols=282 Identities=19% Similarity=0.220 Sum_probs=194.6
Q ss_pred eCCeeeccccccccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCC
Q 047700 256 RNDVLVGWLNNDVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVL 335 (629)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l 335 (629)
.+......+....+++++.|++.+|.+..++. +.. +++|++|++++|.++.+| .+..+++|++|++++|.+
T Consensus 52 ~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~-------l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i 122 (347)
T 4fmz_A 52 AGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSN-------LVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNI 122 (347)
T ss_dssp CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTT-------CTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCC
T ss_pred eCCccccchhhhhcCCccEEEccCCccccchh-hhc-------CCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcc
Confidence 33333334444567789999999988887776 322 788888888888888776 478888888888888888
Q ss_pred CCcccccCccccceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcc
Q 047700 336 GDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGG 415 (629)
Q Consensus 336 ~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 415 (629)
...+.+..+++|++|++++|.....+..+..+++|++|++++| .+..++. +..+++|+.|++++|.+....+
T Consensus 123 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~----- 194 (347)
T 4fmz_A 123 SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIEDISP----- 194 (347)
T ss_dssp CCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCCCGG-----
T ss_pred cCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCccccccc-----
Confidence 8866688888888888888855544445788888888888887 4555554 7788888888888887643211
Q ss_pred cccccccccCccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhh----------
Q 047700 416 AEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE---------- 485 (629)
Q Consensus 416 ~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~---------- 485 (629)
...+.+|+.|++++|.+..... ...+++|++|.+.++......+ +..+++|+.|.
T Consensus 195 ---------~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 259 (347)
T 4fmz_A 195 ---------LASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN 259 (347)
T ss_dssp ---------GGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred ---------ccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh
Confidence 1123555555555555543221 2344555555555553332211 33344444443
Q ss_pred -hccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccce
Q 047700 486 -LRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTS 564 (629)
Q Consensus 486 -~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 564 (629)
...+++|+. |++++| .++.+ ..+..+++|+.|++++|......+.... .+++|+.|++++|+ +..
T Consensus 260 ~~~~l~~L~~--L~l~~n-~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~-------~l~~L~~L~L~~n~-l~~ 325 (347)
T 4fmz_A 260 AVKDLTKLKM--LNVGSN-QISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIG-------GLTNLTTLFLSQNH-ITD 325 (347)
T ss_dssp GGTTCTTCCE--EECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHH-------TCTTCSEEECCSSS-CCC
T ss_pred hHhcCCCcCE--EEccCC-ccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhh-------ccccCCEEEccCCc-ccc
Confidence 557789999 999996 56665 3478899999999999985444443333 58999999999975 666
Q ss_pred eccCCCeeecCCCceeeecCCC
Q 047700 565 FCSGNCTFKFPSLEDLFVIDCP 586 (629)
Q Consensus 565 ~~~~~~~~~~p~L~~L~i~~c~ 586 (629)
++. ...+++|++|++++|+
T Consensus 326 ~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 326 IRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp CGG---GGGCTTCSEESSSCC-
T ss_pred ccC---hhhhhccceeehhhhc
Confidence 654 6789999999999986
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=2.6e-22 Score=213.22 Aligned_cols=326 Identities=16% Similarity=0.119 Sum_probs=204.0
Q ss_pred eeeccccccccccceEEeccCCCCCCCC-CCCCCCCcchhccCCccEEEecCCccc-cc-chhhhcccCCcEEEcCCcCC
Q 047700 259 VLVGWLNNDVLKNCSAVSLNDIEIGVLP-KGLEYPQLEFFWMSKLRGLALSKMQLL-SL-PQSVHLLSNLQTLCLDQCVL 335 (629)
Q Consensus 259 ~~~~~~~~~~~~~l~~L~l~~~~~~~lp-~~~~~~~l~~l~~~~L~~L~l~~~~~~-~l-p~~l~~l~~L~~L~l~~~~l 335 (629)
.+...+. .++++++|++++|.+..++ ..+.. +++|++|++++|.+. .+ |..+..+++|++|++++|.+
T Consensus 21 ~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~-------l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 21 GLHQVPE--LPAHVNYVDLSLNSIAELNETSFSR-------LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp CCSSCCC--CCTTCCEEECCSSCCCEECTTTTSS-------CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred CcccCCC--CCCccCEEEecCCccCcCChhHhcc-------CccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 3444444 5578999999999998774 34443 889999999999886 45 56688999999999999998
Q ss_pred CC--cccccCccccceeeccCCCCcc-Cchh--hhcCccccEEeecCCCCCCccChhhhhcCccCceEEecccccccccc
Q 047700 336 GD--ISIIGNLEKLENLSLVDSDIEW-LPNE--IGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFE 410 (629)
Q Consensus 336 ~~--~~~i~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~ 410 (629)
.. |..++++++|++|++++|.++. .|.. ++++++|++|++++|...+..|...++++++|++|++++|.+....+
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 87 5678999999999999999885 4544 88899999999999854444455547899999999999998764333
Q ss_pred CCCccc----ccc------cccccC------------ccccCcceEEccCcchhhhccccCC-hhhhcccceeeeccCCC
Q 047700 411 GKEGGA----EAS------ATFVFP------------KVISNLEELKLGGKDITMICQDHLP-KHLFQNLKSLEVVSDKS 467 (629)
Q Consensus 411 ~~~~~~----~~~------~~~~~p------------~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 467 (629)
...... +.. .+..++ ..+.+|+.|++++|.+.......+. ....++|+.|.+.++..
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 211100 000 000010 1124567777776665432211000 00113344444443321
Q ss_pred Cceee----------cccc--ccCchhhhh-------------hccccCceeeeEEEecCCCCccccchHHHhcccCcce
Q 047700 468 DNFSI----------GSLQ--RFHNMEKLE-------------LRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMK 522 (629)
Q Consensus 468 ~~~~~----------~~~~--~~~~L~~L~-------------~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~ 522 (629)
..... ..+. ...+|+.|. ...+++|+. |+++++ .++..++ ..+.++++|+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--L~Ls~n-~l~~~~~-~~~~~l~~L~~ 327 (455)
T 3v47_A 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ--LTLAQN-EINKIDD-NAFWGLTHLLK 327 (455)
T ss_dssp TSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCE--EECTTS-CCCEECT-TTTTTCTTCCE
T ss_pred cccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCE--EECCCC-cccccCh-hHhcCcccCCE
Confidence 11000 0000 012233222 345677788 888774 3444432 34667888888
Q ss_pred EEEecccccceec-ccccccccccccccccccccccccccccee-ccCCCeeecCCCceeeecCCCCccccCCC-CCCch
Q 047700 523 LRIGGCKLMTEII-SSEEDVEEDEVVFSRLKWLSLECLESLTSF-CSGNCTFKFPSLEDLFVIDCPKVMIFSCG-VSSTP 599 (629)
Q Consensus 523 L~l~~c~~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~p~L~~L~i~~c~~L~~lp~~-~~~l~ 599 (629)
|++++|.. ..++ .... .+++|+.|+++++ .+..+ +. ....+++|++|++++|. ++.+|.. +..++
T Consensus 328 L~Ls~N~l-~~~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~~--~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 395 (455)
T 3v47_A 328 LNLSQNFL-GSIDSRMFE-------NLDKLEVLDLSYN-HIRALGDQ--SFLGLPNLKELALDTNQ-LKSVPDGIFDRLT 395 (455)
T ss_dssp EECCSSCC-CEECGGGGT-------TCTTCCEEECCSS-CCCEECTT--TTTTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred EECCCCcc-CCcChhHhc-------CcccCCEEECCCC-cccccChh--hccccccccEEECCCCc-cccCCHhHhccCC
Confidence 88888763 4443 2222 5788888888885 44544 33 45678888888888864 5666654 57788
Q ss_pred hhHHhhhccCC
Q 047700 600 RLREVRKNWGL 610 (629)
Q Consensus 600 ~L~~l~~~~~~ 610 (629)
+|++|. ..++
T Consensus 396 ~L~~L~-l~~N 405 (455)
T 3v47_A 396 SLQKIW-LHTN 405 (455)
T ss_dssp TCCEEE-CCSS
T ss_pred cccEEE-ccCC
Confidence 888887 4443
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.1e-22 Score=223.17 Aligned_cols=292 Identities=17% Similarity=0.208 Sum_probs=194.0
Q ss_pred ccccceEEeccCCCCCCCCCCC-CCCCcchhccCCccEEEecCCcccccc-hhhhcccCCcEEEcCCcCCCC-c-ccccC
Q 047700 268 VLKNCSAVSLNDIEIGVLPKGL-EYPQLEFFWMSKLRGLALSKMQLLSLP-QSVHLLSNLQTLCLDQCVLGD-I-SIIGN 343 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~~lp~~~-~~~~l~~l~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~-~-~~i~~ 343 (629)
.+.+++.+++.++.+..+|... .. +++|++|++++|.+..+| ..++.+++|++|++++|.+.. + ..+++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~-------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDS-------FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHH-------CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHcc-------CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 3567788888888887777642 11 678888888888888665 367888888888888888877 3 35678
Q ss_pred ccccceeeccCCCCccCchhh-hcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCccccccccc
Q 047700 344 LEKLENLSLVDSDIEWLPNEI-GELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATF 422 (629)
Q Consensus 344 l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 422 (629)
+++|++|++++|.++.+|..+ +++++|++|++++| .+..++...++++++|+.|++++|.+....
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------- 187 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD------------- 187 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCC-------------
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcC-------------
Confidence 888888888888888887764 78888888888887 455555544788888888888888764321
Q ss_pred ccCccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhh-----------hccccC
Q 047700 423 VFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE-----------LRQFIQ 491 (629)
Q Consensus 423 ~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~-----------~~~~~~ 491 (629)
+..+++|+.|++++|.+..+. ..++|+.|+++++......... ..+|+.|. +..+++
T Consensus 188 --~~~l~~L~~L~l~~n~l~~l~-------~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~l~~l~~ 255 (597)
T 3oja_B 188 --LSLIPSLFHANVSYNLLSTLA-------IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDTAWLLNYPG 255 (597)
T ss_dssp --GGGCTTCSEEECCSSCCSEEE-------CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCCGGGGGCTT
T ss_pred --hhhhhhhhhhhcccCcccccc-------CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCChhhccCCC
Confidence 122345555555555444221 1123444444443322211111 11222221 456788
Q ss_pred ceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceeccCCCe
Q 047700 492 RDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCT 571 (629)
Q Consensus 492 L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 571 (629)
|+. |+++++ .++..++ ..++.+++|+.|++++|. +..++.... .+|+|+.|++++| .+..+|. ..
T Consensus 256 L~~--L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~~~-------~l~~L~~L~Ls~N-~l~~i~~--~~ 320 (597)
T 3oja_B 256 LVE--VDLSYN-ELEKIMY-HPFVKMQRLERLYISNNR-LVALNLYGQ-------PIPTLKVLDLSHN-HLLHVER--NQ 320 (597)
T ss_dssp CSE--EECCSS-CCCEEES-GGGTTCSSCCEEECTTSC-CCEEECSSS-------CCTTCCEEECCSS-CCCCCGG--GH
T ss_pred CCE--EECCCC-ccCCCCH-HHhcCccCCCEEECCCCC-CCCCCcccc-------cCCCCcEEECCCC-CCCccCc--cc
Confidence 888 888885 4555433 456788999999998886 555554443 5889999999885 5667776 56
Q ss_pred eecCCCceeeecCCCCccccCCCCCCchhhHHhhhccCCC
Q 047700 572 FKFPSLEDLFVIDCPKVMIFSCGVSSTPRLREVRKNWGLD 611 (629)
Q Consensus 572 ~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~l~~~~~~~ 611 (629)
..+++|+.|++++|. +..+| +..+++|+.|. ..+++
T Consensus 321 ~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~-l~~N~ 356 (597)
T 3oja_B 321 PQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLT-LSHND 356 (597)
T ss_dssp HHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEE-CCSSC
T ss_pred ccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEE-eeCCC
Confidence 788999999998886 45554 56777888877 54444
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=3.4e-22 Score=218.76 Aligned_cols=106 Identities=30% Similarity=0.343 Sum_probs=61.2
Q ss_pred cCCccEEEecCCcccccc-hhhhcccCCcEEEcCCcCCCCcc--cccCccccceeeccCCCCcc--CchhhhcCccccEE
Q 047700 299 MSKLRGLALSKMQLLSLP-QSVHLLSNLQTLCLDQCVLGDIS--IIGNLEKLENLSLVDSDIEW--LPNEIGELTQLRLL 373 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~~~--~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L 373 (629)
+++|++|++++|.++.+| ..+..+++|++|++++|.+...+ .++++++|++|++++|.++. +|..++++++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 154 (570)
T 2z63_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (570)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred chhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEE
Confidence 556666666666665443 45666666666666666665522 36666666666666666653 46666666666666
Q ss_pred eecCCCCCCccChhhhhcCccC----ceEEeccccc
Q 047700 374 DLSSCWNLKVIPPNVISKLTQL----EELYMGNTFV 405 (629)
Q Consensus 374 ~l~~~~~l~~~p~~~i~~l~~L----~~L~l~~~~~ 405 (629)
++++| .+..++...++.+++| +.|++++|.+
T Consensus 155 ~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 155 DLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp ECTTS-CCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred eCcCC-ccceecHHHccchhccchhhhhcccCCCCc
Confidence 66665 3444443335555555 4555555543
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=8e-23 Score=225.58 Aligned_cols=110 Identities=15% Similarity=0.266 Sum_probs=99.4
Q ss_pred cCCccEEEecCCcccc------------------cchhhh--cccCCcEEEcCCcCCCC--cccccCccccceeeccCCC
Q 047700 299 MSKLRGLALSKMQLLS------------------LPQSVH--LLSNLQTLCLDQCVLGD--ISIIGNLEKLENLSLVDSD 356 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~------------------lp~~l~--~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~ 356 (629)
+++|++|++++|.++. +|..++ ++++|++|++++|.+.. |+.++++++|++|++++|+
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 8999999999999997 999998 99999999999999776 7889999999999999998
Q ss_pred -Cc--cCchhhhcC------ccccEEeecCCCCCCccCh--hhhhcCccCceEEecccccccccc
Q 047700 357 -IE--WLPNEIGEL------TQLRLLDLSSCWNLKVIPP--NVISKLTQLEELYMGNTFVKWEFE 410 (629)
Q Consensus 357 -l~--~lp~~i~~l------~~L~~L~l~~~~~l~~~p~--~~i~~l~~L~~L~l~~~~~~~~~~ 410 (629)
++ .+|..++++ ++|++|++++| .+..+|. . ++++++|+.|++++|.+.+..+
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~-l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETS-LQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHH-HTTCTTCCEEECCSCCCEEECC
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhh-hccCCCCCEEeCcCCcCccchh
Confidence 88 499999887 99999999998 5668887 5 9999999999999998764433
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=5.7e-22 Score=214.28 Aligned_cols=138 Identities=21% Similarity=0.230 Sum_probs=108.1
Q ss_pred EeCCeeeccccccccccceEEeccCCCCCCCCC-CCCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEcCC
Q 047700 255 VRNDVLVGWLNNDVLKNCSAVSLNDIEIGVLPK-GLEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQ 332 (629)
Q Consensus 255 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~lp~-~~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~ 332 (629)
.++..+...+. ...+++++|++++|.+..+++ .+.. +++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 7 ls~n~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~-------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 7 RSKNGLIHVPK-DLSQKTTILNISQNYISELWTSDILS-------LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CTTSCCSSCCC-SCCTTCSEEECCSSCCCCCCHHHHTT-------CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred cCCCCcccccc-cccccccEEECCCCcccccChhhccc-------cccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 33444444443 344789999999999887763 3333 88999999999999876 67899999999999999
Q ss_pred cCCCCcccccCccccceeeccCCCCcc--CchhhhcCccccEEeecCCCCCCccChhhhhcCccC--ceEEeccccc
Q 047700 333 CVLGDISIIGNLEKLENLSLVDSDIEW--LPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQL--EELYMGNTFV 405 (629)
Q Consensus 333 ~~l~~~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L--~~L~l~~~~~ 405 (629)
|.++.++.. .+++|++|++++|.++. +|..++++++|++|++++| .+.. ..+..+++| +.|++++|.+
T Consensus 79 N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 79 NKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred CceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccch---hhccccccceeeEEEeecccc
Confidence 999885444 89999999999999885 5788999999999999997 3443 236778888 9999998876
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=7.9e-22 Score=217.42 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=65.2
Q ss_pred cCCccEEEecCCccccc-chhhhcccCCcEEEcCCcCCCC--cccccCccccceeeccCCCCccCc-hhhhcCccccEEe
Q 047700 299 MSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQCVLGD--ISIIGNLEKLENLSLVDSDIEWLP-NEIGELTQLRLLD 374 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~ 374 (629)
+++|++|++++|.+..+ |..++.+++|++|++++|.+.. +..++++++|++|++++|.++.++ ..+..+++|++|+
T Consensus 80 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 159 (606)
T 3t6q_A 80 QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEE
T ss_pred ccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEE
Confidence 56666666666666543 4456666666666666666665 345666666666666666666542 2233366666666
Q ss_pred ecCCCCCCccChhhhhcCccCc--eEEeccccccc
Q 047700 375 LSSCWNLKVIPPNVISKLTQLE--ELYMGNTFVKW 407 (629)
Q Consensus 375 l~~~~~l~~~p~~~i~~l~~L~--~L~l~~~~~~~ 407 (629)
+++| .+..++...++.+++|+ .|++++|.+..
T Consensus 160 L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 160 FQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp CCSS-CCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred cccC-cccccChhhhhhhcccceeEEecCCCccCc
Confidence 6665 44555444466677766 66666665543
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=6.2e-22 Score=210.63 Aligned_cols=303 Identities=20% Similarity=0.297 Sum_probs=195.9
Q ss_pred cccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccc
Q 047700 267 DVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEK 346 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~ 346 (629)
..++.++.|++.++.+..+|. +.. +++|++|++++|.++.+|. +..+++|++|++++|.+...+.++++++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~-~~~-------l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~ 113 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDG-VEY-------LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTN 113 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTT-GGG-------CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTT
T ss_pred hHhccccEEecCCCCCccCcc-hhh-------hcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCC
Confidence 346789999999999988875 222 8999999999999998887 9999999999999999999555999999
Q ss_pred cceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccc------c
Q 047700 347 LENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEAS------A 420 (629)
Q Consensus 347 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~------~ 420 (629)
|++|++++|.++.+|. ++++++|++|++++| .+..++. ++++++|+.|++.++ .....+-.....+.. .
T Consensus 114 L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~~-~~~~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 114 LTGLTLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQ-VTDLKPLANLTTLERLDISSNK 188 (466)
T ss_dssp CCEEECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEES-CCCCGGGTTCTTCCEEECCSSC
T ss_pred CCEEECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCCc-ccCchhhccCCCCCEEECcCCc
Confidence 9999999999999886 899999999999998 5666664 899999999999643 221111000000000 0
Q ss_pred cccc--CccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhh-----------hc
Q 047700 421 TFVF--PKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE-----------LR 487 (629)
Q Consensus 421 ~~~~--p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~-----------~~ 487 (629)
+..+ ...+++|+.|++++|.+.... +...+++|+.|.+.++..... ..+..+++|+.|. ..
T Consensus 189 l~~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~ 262 (466)
T 1o6v_A 189 VSDISVLAKLTNLESLIATNNQISDIT----PLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS 262 (466)
T ss_dssp CCCCGGGGGCTTCSEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGT
T ss_pred CCCChhhccCCCCCEEEecCCcccccc----cccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhh
Confidence 0001 112244444445444444221 123445555555555432221 2233444444443 33
Q ss_pred cccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceecc
Q 047700 488 QFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCS 567 (629)
Q Consensus 488 ~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 567 (629)
.+++|+. |++++| .++.+++ +..+++|+.|++++|. +..++.. ..+++|+.|++++| .+..++.
T Consensus 263 ~l~~L~~--L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~--------~~l~~L~~L~L~~n-~l~~~~~ 326 (466)
T 1o6v_A 263 GLTKLTE--LKLGAN-QISNISP---LAGLTALTNLELNENQ-LEDISPI--------SNLKNLTYLTLYFN-NISDISP 326 (466)
T ss_dssp TCTTCSE--EECCSS-CCCCCGG---GTTCTTCSEEECCSSC-CSCCGGG--------GGCTTCSEEECCSS-CCSCCGG
T ss_pred cCCCCCE--EECCCC-ccCcccc---ccCCCccCeEEcCCCc-ccCchhh--------cCCCCCCEEECcCC-cCCCchh
Confidence 4556666 666653 3333322 4566666666666665 3333321 15778888888775 4444443
Q ss_pred CCCeeecCCCceeeecCCCCccccCCCCCCchhhHHhhhccCCC
Q 047700 568 GNCTFKFPSLEDLFVIDCPKVMIFSCGVSSTPRLREVRKNWGLD 611 (629)
Q Consensus 568 ~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~l~~~~~~~ 611 (629)
...+++|+.|++++|+ +..++ .+..+++|+.|. ..+|.
T Consensus 327 ---~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~-l~~n~ 364 (466)
T 1o6v_A 327 ---VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLS-AGHNQ 364 (466)
T ss_dssp ---GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEE-CCSSC
T ss_pred ---hccCccCCEeECCCCc-cCCch-hhccCCCCCEEe-CCCCc
Confidence 4678888888888874 55553 467778888877 44443
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=4e-22 Score=207.18 Aligned_cols=272 Identities=14% Similarity=0.156 Sum_probs=216.8
Q ss_pred cCCccEEEecCCcccccchh-hhcccCCcEEEcCCcCCCC--cccccCccccceeeccCCCCccCch-hhhcCccccEEe
Q 047700 299 MSKLRGLALSKMQLLSLPQS-VHLLSNLQTLCLDQCVLGD--ISIIGNLEKLENLSLVDSDIEWLPN-EIGELTQLRLLD 374 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~ 374 (629)
++++++|+++++.++.+|.. +..+++|++|++++|.+.. +..++.+++|++|++++|.++.+|. .++++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 89999999999999999865 6889999999999999988 3579999999999999999998864 579999999999
Q ss_pred ecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchhhhccccCChhhh
Q 047700 375 LSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLF 454 (629)
Q Consensus 375 l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 454 (629)
+++| .+..+|...++++++|++|++++|.+....+. ....+++|+.|++++|.++. ++...+
T Consensus 124 L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~-----~~~~~l 185 (390)
T 3o6n_A 124 LERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD------------TFQATTSLQNLQLSSNRLTH-----VDLSLI 185 (390)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT------------TTSSCTTCCEEECCSSCCSB-----CCGGGC
T ss_pred CCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChh------------hccCCCCCCEEECCCCcCCc-----cccccc
Confidence 9998 77888887678999999999999987542221 12336889999999999884 345678
Q ss_pred cccceeeeccCCCCceeeccccccCchhhhh----------hccccCceeeeEEEecCCCCccccchHHHhcccCcceEE
Q 047700 455 QNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE----------LRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLR 524 (629)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~----------~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~ 524 (629)
++|+.|.+.++..... ....+|+.|. ...+++|+. |+++++ .++.. ..+..+++|++|+
T Consensus 186 ~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~~~~~L~~--L~l~~n-~l~~~---~~l~~l~~L~~L~ 254 (390)
T 3o6n_A 186 PSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPVNVELTI--LKLQHN-NLTDT---AWLLNYPGLVEVD 254 (390)
T ss_dssp TTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEECCCCSSCCE--EECCSS-CCCCC---GGGGGCTTCSEEE
T ss_pred cccceeeccccccccc-----CCCCcceEEECCCCeeeeccccccccccE--EECCCC-CCccc---HHHcCCCCccEEE
Confidence 8999999988754332 2233455544 344578999 999995 45554 4578999999999
Q ss_pred EecccccceeccccccccccccccccccccccccccccceeccCCCeeecCCCceeeecCCCCccccCCCCCCchhhHHh
Q 047700 525 IGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKVMIFSCGVSSTPRLREV 604 (629)
Q Consensus 525 l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~l 604 (629)
+++|......+.... .+++|+.|+++++ .++.++. ....+|+|+.|++++| .+..+|..+..+++|++|
T Consensus 255 Ls~n~l~~~~~~~~~-------~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 255 LSYNELEKIMYHPFV-------KMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENL 323 (390)
T ss_dssp CCSSCCCEEESGGGT-------TCSSCCEEECCSS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEE
T ss_pred CCCCcCCCcChhHcc-------ccccCCEEECCCC-cCcccCc--ccCCCCCCCEEECCCC-cceecCccccccCcCCEE
Confidence 999974444344433 5899999999984 7778877 5678999999999999 577888878888888888
Q ss_pred hhccCCC
Q 047700 605 RKNWGLD 611 (629)
Q Consensus 605 ~~~~~~~ 611 (629)
. ..+++
T Consensus 324 ~-L~~N~ 329 (390)
T 3o6n_A 324 Y-LDHNS 329 (390)
T ss_dssp E-CCSSC
T ss_pred E-CCCCc
Confidence 8 55544
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=8.5e-22 Score=217.14 Aligned_cols=131 Identities=22% Similarity=0.337 Sum_probs=77.7
Q ss_pred ccccceEEeccCCCCCCCCC-CCCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEcCCcCCCC--cccccC
Q 047700 268 VLKNCSAVSLNDIEIGVLPK-GLEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQCVLGD--ISIIGN 343 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~~lp~-~~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~--~~~i~~ 343 (629)
..+.++.|++++|.+..++. .+.. +++|++|++++|.++.+ |..|..+++|++|++++|.+.. |..+++
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~-------l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSN-------FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTT-------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCCCcCEEECCCCCcCEeChhhccC-------CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 44677777777777766654 2222 56666666666666654 3445666666666666666655 345666
Q ss_pred ccccceeeccCCCCccCc-hhhhcCccccEEeecCCCCCC-ccChhhhhcCccCceEEecccccc
Q 047700 344 LEKLENLSLVDSDIEWLP-NEIGELTQLRLLDLSSCWNLK-VIPPNVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 344 l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~-~~p~~~i~~l~~L~~L~l~~~~~~ 406 (629)
+++|++|++++|.++.+| ..++++++|++|++++|...+ .+|.. ++++++|++|++++|.+.
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcce
Confidence 666666666666666554 445666666666666653222 34444 566666666666666544
No 22
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=5.8e-22 Score=201.14 Aligned_cols=281 Identities=16% Similarity=0.196 Sum_probs=215.5
Q ss_pred cceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccc-hhhhcccCCcEEEcCCcCCCC--cccccCcccc
Q 047700 271 NCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLP-QSVHLLSNLQTLCLDQCVLGD--ISIIGNLEKL 347 (629)
Q Consensus 271 ~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L 347 (629)
.++.+++.++.+..+|..+ .++|++|++++|.+..++ ..+..+++|++|++++|.++. +..++++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---------~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---------SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred cCCEEECCCCCccccCCCC---------CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 5788999999999999765 578999999999999774 579999999999999999988 5679999999
Q ss_pred ceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCcc
Q 047700 348 ENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKV 427 (629)
Q Consensus 348 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~ 427 (629)
++|++++|.++.+|..+. ++|++|++++| .+..+|...+.++++|+.|++++|.+..... .|..
T Consensus 105 ~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~ 168 (332)
T 2ft3_A 105 QKLYISKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGF-------------EPGA 168 (332)
T ss_dssp CEEECCSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGS-------------CTTS
T ss_pred CEEECCCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCC-------------Cccc
Confidence 999999999999998776 89999999998 6777887768999999999999998753111 1111
Q ss_pred cc--CcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCC
Q 047700 428 IS--NLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRL 505 (629)
Q Consensus 428 l~--~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l 505 (629)
+. +|+.|++++|.+..++ ....++|++|.+.++......+.. +..+++|+. |+++++ .+
T Consensus 169 ~~~l~L~~L~l~~n~l~~l~-----~~~~~~L~~L~l~~n~i~~~~~~~-----------l~~l~~L~~--L~L~~N-~l 229 (332)
T 2ft3_A 169 FDGLKLNYLRISEAKLTGIP-----KDLPETLNELHLDHNKIQAIELED-----------LLRYSKLYR--LGLGHN-QI 229 (332)
T ss_dssp SCSCCCSCCBCCSSBCSSCC-----SSSCSSCSCCBCCSSCCCCCCTTS-----------STTCTTCSC--CBCCSS-CC
T ss_pred ccCCccCEEECcCCCCCccC-----ccccCCCCEEECCCCcCCccCHHH-----------hcCCCCCCE--EECCCC-cC
Confidence 21 7899999999988543 334478999999887554433233 345677888 888884 55
Q ss_pred ccccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceeccCCCe-----eecCCCcee
Q 047700 506 KNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCT-----FKFPSLEDL 580 (629)
Q Consensus 506 ~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-----~~~p~L~~L 580 (629)
+.+++ ..+..+++|+.|++++|. +..++.... .+++|+.|+++++ .++.++..... ..+++|+.|
T Consensus 230 ~~~~~-~~~~~l~~L~~L~L~~N~-l~~lp~~l~-------~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L 299 (332)
T 2ft3_A 230 RMIEN-GSLSFLPTLRELHLDNNK-LSRVPAGLP-------DLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGI 299 (332)
T ss_dssp CCCCT-TGGGGCTTCCEEECCSSC-CCBCCTTGG-------GCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEE
T ss_pred CcCCh-hHhhCCCCCCEEECCCCc-CeecChhhh-------cCccCCEEECCCC-CCCccChhHccccccccccccccce
Confidence 65543 346889999999999987 556665443 5899999999984 56666542111 126789999
Q ss_pred eecCCCCc--cccCCCCCCchhhHHhh
Q 047700 581 FVIDCPKV--MIFSCGVSSTPRLREVR 605 (629)
Q Consensus 581 ~i~~c~~L--~~lp~~~~~l~~L~~l~ 605 (629)
.+.+++-. ...|..+..+++|+.+.
T Consensus 300 ~l~~N~~~~~~~~~~~~~~l~~L~~l~ 326 (332)
T 2ft3_A 300 SLFNNPVPYWEVQPATFRCVTDRLAIQ 326 (332)
T ss_dssp ECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred EeecCcccccccCcccccccchhhhhh
Confidence 99999854 33344577778887776
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=3.9e-22 Score=219.84 Aligned_cols=320 Identities=15% Similarity=0.084 Sum_probs=203.7
Q ss_pred cccccceEEeccCCCCCCCCC-CCCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEcCCcCCCC--ccccc
Q 047700 267 DVLKNCSAVSLNDIEIGVLPK-GLEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQCVLGD--ISIIG 342 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~-~~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~--~~~i~ 342 (629)
..++.+++|++++|.+..+++ .+.. +++|++|++++|.+..+ |..|..+++|++|++++|.+.. |..++
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~-------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSR-------LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTT-------CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred CCCCcCcEEEccCCccCcCChhHhcc-------CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc
Confidence 456789999999999988854 3433 89999999999999865 6789999999999999999987 56799
Q ss_pred CccccceeeccCCCCccC-chhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCC--Cccccc-
Q 047700 343 NLEKLENLSLVDSDIEWL-PNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGK--EGGAEA- 418 (629)
Q Consensus 343 ~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~- 418 (629)
++++|++|++++|.++.+ |..++++++|++|++++| .+..++...+..+++|+.|++++|.+....+.. ....+.
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred ccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence 999999999999999987 567899999999999998 555542212566999999999999876432210 000000
Q ss_pred ------c-cccccCc-cc--c----------------------------------------------------CcceEEc
Q 047700 419 ------S-ATFVFPK-VI--S----------------------------------------------------NLEELKL 436 (629)
Q Consensus 419 ------~-~~~~~p~-~l--~----------------------------------------------------~L~~L~L 436 (629)
. .+..++. .+ . +|+.|++
T Consensus 182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 0 0000000 00 1 3444445
Q ss_pred cCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhh-------------hccccCceeeeEEEecCC
Q 047700 437 GGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE-------------LRQFIQRDIFKWRVSYCK 503 (629)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~-------------~~~~~~L~~~~L~l~~c~ 503 (629)
++|.+..+....+ ..+++|++|++.++... ..+..+..+++|+.|. ...+++|+. |+++++.
T Consensus 262 ~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--L~l~~n~ 336 (606)
T 3t6q_A 262 QKHYFFNISSNTF--HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH--LSIKGNT 336 (606)
T ss_dssp TTCCCSSCCTTTT--TTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE--EECCSCS
T ss_pred ecCccCccCHHHh--ccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE--EECCCCC
Confidence 5555443322211 34566777777766433 3344445555555554 344566666 6666654
Q ss_pred CCccccchHHHhcccCcceEEEeccccccee--ccccccccccccccccccccccccccccceeccCCCeeecCCCceee
Q 047700 504 RLKNLVSSFTAKSLVHLMKLRIGGCKLMTEI--ISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLF 581 (629)
Q Consensus 504 ~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~ 581 (629)
....++. ..++.+++|++|++++|...... +... ..+++|+.|+++++.-....+. ....+++|++|+
T Consensus 337 ~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~ 406 (606)
T 3t6q_A 337 KRLELGT-GCLENLENLRELDLSHDDIETSDCCNLQL-------RNLSHLQSLNLSYNEPLSLKTE--AFKECPQLELLD 406 (606)
T ss_dssp SCCBCCS-STTTTCTTCCEEECCSSCCCEEEESTTTT-------TTCTTCCEEECCSCSCEEECTT--TTTTCTTCSEEE
T ss_pred cccccch-hhhhccCcCCEEECCCCccccccCcchhc-------ccCCCCCEEECCCCcCCcCCHH--HhcCCccCCeEE
Confidence 4333322 33556677777777766533222 1112 2477777777777533222233 455677888888
Q ss_pred ecCCCCccccCCC-CCCchhhHHhhhccCC
Q 047700 582 VIDCPKVMIFSCG-VSSTPRLREVRKNWGL 610 (629)
Q Consensus 582 i~~c~~L~~lp~~-~~~l~~L~~l~~~~~~ 610 (629)
+.+|.-....|.. +..+++|++|. ..+|
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~-l~~n 435 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLN-LSHS 435 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEE-CTTC
T ss_pred CCCCcCCCcccchhhhCcccCCEEE-CCCC
Confidence 8777644333333 67777787777 4343
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=2.1e-22 Score=227.45 Aligned_cols=107 Identities=25% Similarity=0.336 Sum_probs=53.1
Q ss_pred cCCccEEEecCCccc-ccchhhhccc-CCcEEEcCCcCCCC--cccccC--ccccceeeccCCCCc-cCchhhhcCcccc
Q 047700 299 MSKLRGLALSKMQLL-SLPQSVHLLS-NLQTLCLDQCVLGD--ISIIGN--LEKLENLSLVDSDIE-WLPNEIGELTQLR 371 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~-~lp~~l~~l~-~L~~L~l~~~~l~~--~~~i~~--l~~L~~L~l~~~~l~-~lp~~i~~l~~L~ 371 (629)
+++|++|++++|.+. .+|..+..+. +|++|++++|.+.. |+.++. +++|++|++++|.++ .+|..++++++|+
T Consensus 342 l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 421 (768)
T 3rgz_A 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421 (768)
T ss_dssp CTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCC
T ss_pred CCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCC
Confidence 445555555555554 4444444444 45555554444432 233332 444555555555544 4455555555555
Q ss_pred EEeecCCCCCCccChhhhhcCccCceEEecccccc
Q 047700 372 LLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 372 ~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~ 406 (629)
+|++++|...+.+|.. ++++++|+.|++++|.+.
T Consensus 422 ~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 422 SLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLE 455 (768)
T ss_dssp EEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred EEECcCCcccCcccHH-HhcCCCCCEEECCCCccc
Confidence 5555555333344443 555555555555555543
No 25
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.6e-21 Score=205.86 Aligned_cols=118 Identities=22% Similarity=0.246 Sum_probs=60.5
Q ss_pred cccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccccc
Q 047700 269 LKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLE 348 (629)
Q Consensus 269 ~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~ 348 (629)
++.++.|+++++.+..+|. +.. +++|++|++++|.++.+| ++.+++|++|++++|.++.++ ++++++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~~~-l~~-------l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTG-IEK-------LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSCCCCCTT-GGG-------CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCC
T ss_pred cCCCCEEEccCCCcccChh-hcc-------cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCC
Confidence 4455555555555555441 111 455555555555555544 455555555555555555532 55555555
Q ss_pred eeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccc
Q 047700 349 NLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNT 403 (629)
Q Consensus 349 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~ 403 (629)
+|++++|+++.+| ++++++|++|++++| .++.++ ++++++|+.|++++|
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLN 158 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTC
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCC
Confidence 5555555555543 455555555555554 333332 445555555555555
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1.2e-21 Score=213.62 Aligned_cols=140 Identities=26% Similarity=0.339 Sum_probs=98.4
Q ss_pred EEEeCCeeeccccccccccceEEeccCCCCCCCCC-CCCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEc
Q 047700 253 ITVRNDVLVGWLNNDVLKNCSAVSLNDIEIGVLPK-GLEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCL 330 (629)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~lp~-~~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l 330 (629)
...++..++..+. ...++++.|++++|.+..+++ .+.. +++|++|++++|.++.+ |..+..+++|++|++
T Consensus 36 l~ls~~~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~-------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 36 VDYSNRNLTHVPK-DLPPRTKALSLSQNSISELRMPDISF-------LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp EECTTSCCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTT-------CTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred EEcCCCCCccCCC-CCCCCcCEEECCCCCccccChhhhcc-------CCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 3444444554443 344778888888888877764 3333 78888888888888866 566788888888888
Q ss_pred CCcCCCCcccccCccccceeeccCCCCccCc--hhhhcCccccEEeecCCCCCCccChhhhhcCccC--ceEEeccccc
Q 047700 331 DQCVLGDISIIGNLEKLENLSLVDSDIEWLP--NEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQL--EELYMGNTFV 405 (629)
Q Consensus 331 ~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L--~~L~l~~~~~ 405 (629)
++|.++.++.. .+++|++|++++|.++.+| ..++++++|++|++++| .+.... +..+++| +.|++++|.+
T Consensus 108 s~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccc
Confidence 88888774333 7888888888888887654 67888888888888886 333322 4455555 8888888766
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=208.75 Aligned_cols=288 Identities=18% Similarity=0.198 Sum_probs=212.6
Q ss_pred EEEeCCeeecccc--ccccccceEEeccCCCCCCCC-CCCCCCCcchhccCCccEEEecCCcccccch-hhhcccCCcEE
Q 047700 253 ITVRNDVLVGWLN--NDVLKNCSAVSLNDIEIGVLP-KGLEYPQLEFFWMSKLRGLALSKMQLLSLPQ-SVHLLSNLQTL 328 (629)
Q Consensus 253 ~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~lp-~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L 328 (629)
...+++.+..... ...+++++.|++.+|.+..++ ..+.. +++|++|++++|.++.+|. .+..+++|++|
T Consensus 37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-------LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-------CTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred EECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC-------CccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 3444444444332 245789999999999988774 44443 8999999999999998875 47899999999
Q ss_pred EcCCcCCCC--cccccCccccceeeccCCCCccC-chhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccc
Q 047700 329 CLDQCVLGD--ISIIGNLEKLENLSLVDSDIEWL-PNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFV 405 (629)
Q Consensus 329 ~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~ 405 (629)
++++|.+.. +..+..+++|++|++++|.++.+ |..+..+++|++|++++| .+..++...+.++++|+.|++++|.+
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcC
Confidence 999999988 46789999999999999999866 457889999999999998 77888887799999999999999987
Q ss_pred cccccCCCcccccccccccCccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhh
Q 047700 406 KWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE 485 (629)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 485 (629)
....+. ....+.+|+.|++++|......... .....+|++|++.++.........
T Consensus 189 ~~~~~~------------~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~----------- 243 (477)
T 2id5_A 189 NAIRDY------------SFKRLYRLKVLEISHWPYLDTMTPN--CLYGLNLTSLSITHCNLTAVPYLA----------- 243 (477)
T ss_dssp CEECTT------------CSCSCTTCCEEEEECCTTCCEECTT--TTTTCCCSEEEEESSCCCSCCHHH-----------
T ss_pred cEeChh------------hcccCcccceeeCCCCccccccCcc--cccCccccEEECcCCcccccCHHH-----------
Confidence 543221 1223688999999987654221111 122348999999987544322111
Q ss_pred hccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceecccccccccccccccccccccccccccccee
Q 047700 486 LRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSF 565 (629)
Q Consensus 486 ~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 565 (629)
+..+++|+. |+++++ .++.+++ ..+.++++|+.|++.+|......+.... .+++|+.|+++++ .++.+
T Consensus 244 ~~~l~~L~~--L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~ 311 (477)
T 2id5_A 244 VRHLVYLRF--LNLSYN-PISTIEG-SMLHELLRLQEIQLVGGQLAVVEPYAFR-------GLNYLRVLNVSGN-QLTTL 311 (477)
T ss_dssp HTTCTTCCE--EECCSS-CCCEECT-TSCTTCTTCCEEECCSSCCSEECTTTBT-------TCTTCCEEECCSS-CCSCC
T ss_pred hcCccccCe--eECCCC-cCCccCh-hhccccccCCEEECCCCccceECHHHhc-------CcccCCEEECCCC-cCcee
Confidence 456778888 999885 4566543 4467889999999998874333333332 5889999999985 66666
Q ss_pred ccCCCeeecCCCceeeecCCC
Q 047700 566 CSGNCTFKFPSLEDLFVIDCP 586 (629)
Q Consensus 566 ~~~~~~~~~p~L~~L~i~~c~ 586 (629)
+.. ....+++|+.|++.+++
T Consensus 312 ~~~-~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 312 EES-VFHSVGNLETLILDSNP 331 (477)
T ss_dssp CGG-GBSCGGGCCEEECCSSC
T ss_pred CHh-HcCCCcccCEEEccCCC
Confidence 541 23567899999988776
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=6.6e-21 Score=193.16 Aligned_cols=284 Identities=18% Similarity=0.188 Sum_probs=216.0
Q ss_pred cceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccch-hhhcccCCcEEEcCCcCCCC--cccccCcccc
Q 047700 271 NCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQ-SVHLLSNLQTLCLDQCVLGD--ISIIGNLEKL 347 (629)
Q Consensus 271 ~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L 347 (629)
.++.+++.++.+..+|..+ .+++++|++++|.++.++. .+..+++|++|++++|.+.. |..++.+++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---------PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCeEEEecCCCccccCccC---------CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 5788999999999998765 5789999999999998865 68999999999999999988 5679999999
Q ss_pred ceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCcc
Q 047700 348 ENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKV 427 (629)
Q Consensus 348 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~ 427 (629)
++|++++|.++.+|..+. ++|++|++++| .+..++...+.++++|+.|++++|.+..... .......
T Consensus 103 ~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~~~~~~~ 169 (330)
T 1xku_A 103 ERLYLSKNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGI----------ENGAFQG 169 (330)
T ss_dssp CEEECCSSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGB----------CTTGGGG
T ss_pred CEEECCCCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCc----------ChhhccC
Confidence 999999999999998765 79999999998 6778887778999999999999998753111 0001233
Q ss_pred ccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCcc
Q 047700 428 ISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKN 507 (629)
Q Consensus 428 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~ 507 (629)
+++|+.|++++|.+..++ ....++|++|.+.++......+.. +..+++|+. |+++++ .++.
T Consensus 170 l~~L~~L~l~~n~l~~l~-----~~~~~~L~~L~l~~n~l~~~~~~~-----------~~~l~~L~~--L~Ls~n-~l~~ 230 (330)
T 1xku_A 170 MKKLSYIRIADTNITTIP-----QGLPPSLTELHLDGNKITKVDAAS-----------LKGLNNLAK--LGLSFN-SISA 230 (330)
T ss_dssp CTTCCEEECCSSCCCSCC-----SSCCTTCSEEECTTSCCCEECTGG-----------GTTCTTCCE--EECCSS-CCCE
T ss_pred CCCcCEEECCCCccccCC-----ccccccCCEEECCCCcCCccCHHH-----------hcCCCCCCE--EECCCC-cCce
Confidence 688999999999988543 333478999999988644432222 356678899 999985 4555
Q ss_pred ccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceeccCCC-----eeecCCCceeee
Q 047700 508 LVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNC-----TFKFPSLEDLFV 582 (629)
Q Consensus 508 l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-----~~~~p~L~~L~i 582 (629)
+++ ..+..+++|+.|++++|. +..++.... .+++|+.|+++++ .++.++.... ....++|+.|++
T Consensus 231 ~~~-~~~~~l~~L~~L~L~~N~-l~~lp~~l~-------~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 231 VDN-GSLANTPHLRELHLNNNK-LVKVPGGLA-------DHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp ECT-TTGGGSTTCCEEECCSSC-CSSCCTTTT-------TCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred eCh-hhccCCCCCCEEECCCCc-CccCChhhc-------cCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEe
Confidence 543 357889999999999997 556665443 5899999999984 5666654211 113578999999
Q ss_pred cCCCCcc--ccCCCCCCchhhHHhh
Q 047700 583 IDCPKVM--IFSCGVSSTPRLREVR 605 (629)
Q Consensus 583 ~~c~~L~--~lp~~~~~l~~L~~l~ 605 (629)
.++|-.. ..|..+..+++|+.++
T Consensus 301 ~~N~~~~~~i~~~~f~~~~~l~~l~ 325 (330)
T 1xku_A 301 FSNPVQYWEIQPSTFRCVYVRAAVQ 325 (330)
T ss_dssp CSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred ecCcccccccCccccccccceeEEE
Confidence 9988532 2234466666676665
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=2e-21 Score=206.38 Aligned_cols=302 Identities=19% Similarity=0.126 Sum_probs=211.1
Q ss_pred eEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEcCCcCCCC---cccccCccccc
Q 047700 273 SAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQCVLGD---ISIIGNLEKLE 348 (629)
Q Consensus 273 ~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~ 348 (629)
+.+...++.+..+|. + .++|++|++++|.++.+ |..++.+++|++|++++|.+.. +..+.++++|+
T Consensus 13 ~~~~c~~~~l~~lp~-l---------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~ 82 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L---------PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI 82 (455)
T ss_dssp TEEECCSSCCSSCCC-C---------CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCC
T ss_pred cccCcCCCCcccCCC-C---------CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCC
Confidence 457777888888887 2 68999999999999976 7789999999999999999864 45699999999
Q ss_pred eeeccCCCCccC-chhhhcCccccEEeecCCCCCCc-cC-hhhhhcCccCceEEeccccccccccCCCcccccccccccC
Q 047700 349 NLSLVDSDIEWL-PNEIGELTQLRLLDLSSCWNLKV-IP-PNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFP 425 (629)
Q Consensus 349 ~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~-~p-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p 425 (629)
+|++++|.++.+ |..++++++|++|++++| .+.. .+ ...++++++|++|++++|.+....+.. +.
T Consensus 83 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----------~~ 150 (455)
T 3v47_A 83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS-----------FF 150 (455)
T ss_dssp EEECTTCTTCEECTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG-----------GG
T ss_pred EEeCCCCccCccChhhccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCccc-----------cc
Confidence 999999999966 778999999999999998 4443 22 223788999999999999876432210 12
Q ss_pred ccccCcceEEccCcchhhhccccCChh--------------------------------hhcccceeeeccCCCCceeec
Q 047700 426 KVISNLEELKLGGKDITMICQDHLPKH--------------------------------LFQNLKSLEVVSDKSDNFSIG 473 (629)
Q Consensus 426 ~~l~~L~~L~L~~~~~~~~~~~~~~~~--------------------------------~~~~L~~L~l~~~~~~~~~~~ 473 (629)
..+++|+.|++++|.+.......+... .+++|++|+++++......+.
T Consensus 151 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp GGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred CCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh
Confidence 235778888888777765432222111 224556666655543322222
Q ss_pred cccc---cCchhhhhhc-------------------------cccCceeeeEEEecCCCCccccchHHHhcccCcceEEE
Q 047700 474 SLQR---FHNMEKLELR-------------------------QFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRI 525 (629)
Q Consensus 474 ~~~~---~~~L~~L~~~-------------------------~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l 525 (629)
.+.. ..+|+.|... ..++|+. |+++++. ++...+ ..++.+++|+.|++
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--L~l~~n~-l~~~~~-~~~~~l~~L~~L~L 306 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT--CDLSKSK-IFALLK-SVFSHFTDLEQLTL 306 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCE--EECCSSC-CCEECT-TTTTTCTTCCEEEC
T ss_pred hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceE--EEecCcc-ccccch-hhcccCCCCCEEEC
Confidence 1111 1223332211 1257888 8888854 444333 44688999999999
Q ss_pred ecccccceeccccccccccccccccccccccccccccceeccCCCeeecCCCceeeecCCCCccccCCCCCCchhhHHhh
Q 047700 526 GGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKVMIFSCGVSSTPRLREVR 605 (629)
Q Consensus 526 ~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~l~ 605 (629)
++|......+.... .+++|+.|+++++ .+..++.. ....+++|+.|++++|.--...|..+..+++|++|.
T Consensus 307 s~n~l~~~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 307 AQNEINKIDDNAFW-------GLTHLLKLNLSQN-FLGSIDSR-MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp TTSCCCEECTTTTT-------TCTTCCEEECCSS-CCCEECGG-GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCcccccChhHhc-------CcccCCEEECCCC-ccCCcChh-HhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence 99884433333333 5899999999986 55655321 456799999999999965444467799999999998
Q ss_pred hccCC
Q 047700 606 KNWGL 610 (629)
Q Consensus 606 ~~~~~ 610 (629)
..++
T Consensus 378 -L~~N 381 (455)
T 3v47_A 378 -LDTN 381 (455)
T ss_dssp -CCSS
T ss_pred -CCCC
Confidence 4443
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1e-21 Score=216.43 Aligned_cols=119 Identities=25% Similarity=0.282 Sum_probs=92.1
Q ss_pred cccccceEEeccCCCCCCCCC-CCCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEcCCcCCCC--ccccc
Q 047700 267 DVLKNCSAVSLNDIEIGVLPK-GLEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQCVLGD--ISIIG 342 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~-~~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~--~~~i~ 342 (629)
..++++++|++++|.+..+++ .+.. +++|++|++++|.++.+ |..++++++|++|++++|.+.. +..++
T Consensus 53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~-------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 125 (606)
T 3vq2_A 53 SNFSELQWLDLSRCEIETIEDKAWHG-------LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG 125 (606)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTT-------CTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCT
T ss_pred cCCccCcEEeCCCCcccccCHHHhhc-------hhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccC
Confidence 356788999999988877754 3333 78899999999988876 7778889999999999998877 35788
Q ss_pred CccccceeeccCCCCc--cCchhhhcCccccEEeecCCCCCCccChhhhhcCc
Q 047700 343 NLEKLENLSLVDSDIE--WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLT 393 (629)
Q Consensus 343 ~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~ 393 (629)
++++|++|++++|.++ .+|..++++++|++|++++| .+..++...++.++
T Consensus 126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLR 177 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHH
T ss_pred CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhh
Confidence 8999999999998887 47888888999999998887 44444433244443
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=1.6e-21 Score=212.34 Aligned_cols=329 Identities=15% Similarity=0.142 Sum_probs=212.4
Q ss_pred eeeccccccccccceEEeccCCCCCCCCC-CCCCCCcchhccCCccEEEecCCcccccc-hhhhcccCCcEEEcCCcCCC
Q 047700 259 VLVGWLNNDVLKNCSAVSLNDIEIGVLPK-GLEYPQLEFFWMSKLRGLALSKMQLLSLP-QSVHLLSNLQTLCLDQCVLG 336 (629)
Q Consensus 259 ~~~~~~~~~~~~~l~~L~l~~~~~~~lp~-~~~~~~l~~l~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~ 336 (629)
.+...+. ...+.+++|++++|.+..+++ .+.. +++|++|++++|.++.++ ..++.+++|++|++++|.+.
T Consensus 16 ~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~-------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 16 SFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRA-------CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp CCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSS-------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccccc-cCCCCccEEECcCCccCccChhhhhc-------CCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 3333333 345789999999999887753 3333 899999999999998765 67899999999999999998
Q ss_pred C-cc-cccCccccceeeccCCCCcc--CchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCC
Q 047700 337 D-IS-IIGNLEKLENLSLVDSDIEW--LPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGK 412 (629)
Q Consensus 337 ~-~~-~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~ 412 (629)
. ++ .++++++|++|++++|.++. .|..++++++|++|++++|..++.+|...++++++|++|++++|.+....+..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 8 44 49999999999999999884 46788999999999999987678888655899999999999999876543321
Q ss_pred Ccc--cccc------cccccC----ccccCcceEEccCcchhhhccccCC-hhhhcccceeeeccCCCCcee--------
Q 047700 413 EGG--AEAS------ATFVFP----KVISNLEELKLGGKDITMICQDHLP-KHLFQNLKSLEVVSDKSDNFS-------- 471 (629)
Q Consensus 413 ~~~--~~~~------~~~~~p----~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~-------- 471 (629)
... .+.. ....+| ..+++|+.|++++|.+........+ ...+++|+.|.+.++......
T Consensus 168 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 247 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247 (549)
T ss_dssp TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGG
T ss_pred hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHh
Confidence 110 0000 011111 1246777777777776643211111 112334455544433110000
Q ss_pred --------------------------eccccccCchhhhh------------------hccccCceeeeEEEecCCCCcc
Q 047700 472 --------------------------IGSLQRFHNMEKLE------------------LRQFIQRDIFKWRVSYCKRLKN 507 (629)
Q Consensus 472 --------------------------~~~~~~~~~L~~L~------------------~~~~~~L~~~~L~l~~c~~l~~ 507 (629)
...+..+++|+.|. ...+++|+. |+++++ .++.
T Consensus 248 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~--L~l~~n-~l~~ 324 (549)
T 2z81_A 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR--ITVENS-KVFL 324 (549)
T ss_dssp GGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCE--EEEESS-CCCC
T ss_pred hhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceE--EEeccC-cccc
Confidence 00112222333322 122356777 888774 4566
Q ss_pred ccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceecc-CCCeeecCCCceeeecCCC
Q 047700 508 LVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCS-GNCTFKFPSLEDLFVIDCP 586 (629)
Q Consensus 508 l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~p~L~~L~i~~c~ 586 (629)
++. ..++++++|+.|++++|...+.++.... ....+++|+.|++++| .++.++. ......+++|+.|++++|
T Consensus 325 ip~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N- 397 (549)
T 2z81_A 325 VPC-SFSQHLKSLEFLDLSENLMVEEYLKNSA----CKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN- 397 (549)
T ss_dssp CCH-HHHHHCTTCCEEECCSSCCCHHHHHHHT----CTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-
T ss_pred CCH-HHHhcCccccEEEccCCccccccccchh----hhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-
Confidence 542 4446788999999998875554432100 0115788888888875 4554431 012456788888888887
Q ss_pred CccccCCCCCCchhhHHhh
Q 047700 587 KVMIFSCGVSSTPRLREVR 605 (629)
Q Consensus 587 ~L~~lp~~~~~l~~L~~l~ 605 (629)
++..+|..+..+++|++|.
T Consensus 398 ~l~~lp~~~~~~~~L~~L~ 416 (549)
T 2z81_A 398 TFHPMPDSCQWPEKMRFLN 416 (549)
T ss_dssp CCCCCCSCCCCCTTCCEEE
T ss_pred CCccCChhhcccccccEEE
Confidence 5667887777778887777
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=5.9e-22 Score=222.57 Aligned_cols=119 Identities=18% Similarity=0.256 Sum_probs=103.5
Q ss_pred CCCCCCCCCCCCCCcchhccCCccEEEecCCcccc------------------cchhhh--cccCCcEEEcCCcCCCC--
Q 047700 280 IEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLS------------------LPQSVH--LLSNLQTLCLDQCVLGD-- 337 (629)
Q Consensus 280 ~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~------------------lp~~l~--~l~~L~~L~l~~~~l~~-- 337 (629)
|.+..+|..+.. +++|++|+|++|.++. +|..++ ++++|++|++++|.+..
T Consensus 435 N~L~~IP~~l~~-------L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i 507 (876)
T 4ecn_A 435 NRITFISKAIQR-------LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL 507 (876)
T ss_dssp CEEEEECGGGGG-------CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC
T ss_pred CcccchhHHHhc-------CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC
Confidence 445557766544 8999999999999997 999887 99999999999998766
Q ss_pred cccccCccccceeeccCCC-Ccc--CchhhhcCc-------cccEEeecCCCCCCccCh-hhhhcCccCceEEecccccc
Q 047700 338 ISIIGNLEKLENLSLVDSD-IEW--LPNEIGELT-------QLRLLDLSSCWNLKVIPP-NVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 338 ~~~i~~l~~L~~L~l~~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~l~~~p~-~~i~~l~~L~~L~l~~~~~~ 406 (629)
|+.++++++|++|++++|+ ++. +|..+++++ +|++|++++| .+..+|. ..++++++|+.|++++|.+.
T Consensus 508 P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcc
Confidence 7789999999999999998 884 898888777 9999999998 5668887 23999999999999999876
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.3e-21 Score=195.82 Aligned_cols=106 Identities=26% Similarity=0.398 Sum_probs=65.1
Q ss_pred cCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cccccCccccceeeccCCCCccCchhhhcCccccEEeecC
Q 047700 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSS 377 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 377 (629)
..++++|++++|.++.+|..++.+++|++|++++|.+.. |..++++++|++|++++|.++.+|..++++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 355666666666666666666666666666666666655 4456666666666666666666666666666666666666
Q ss_pred CCCCCccChhhhhc---------CccCceEEeccccc
Q 047700 378 CWNLKVIPPNVISK---------LTQLEELYMGNTFV 405 (629)
Q Consensus 378 ~~~l~~~p~~~i~~---------l~~L~~L~l~~~~~ 405 (629)
|...+.+|.. ++. +++|+.|++++|.+
T Consensus 160 n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l 195 (328)
T 4fcg_A 160 CPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGI 195 (328)
T ss_dssp ETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECC
T ss_pred CCCccccChh-HhhccchhhhccCCCCCEEECcCCCc
Confidence 6556666554 332 55555555555543
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=2.7e-21 Score=212.11 Aligned_cols=275 Identities=14% Similarity=0.151 Sum_probs=218.3
Q ss_pred hhccCCccEEEecCCcccccchh-hhcccCCcEEEcCCcCCCC--cccccCccccceeeccCCCCccCchh-hhcCcccc
Q 047700 296 FFWMSKLRGLALSKMQLLSLPQS-VHLLSNLQTLCLDQCVLGD--ISIIGNLEKLENLSLVDSDIEWLPNE-IGELTQLR 371 (629)
Q Consensus 296 ~l~~~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~ 371 (629)
.+.+++++.|++++|.+..+|.. +..+++|++|++++|.+.. +..++.+++|++|++++|.++.+|.. ++++++|+
T Consensus 47 ~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 47 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp SGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 33488999999999999988865 6889999999999999988 35899999999999999999988764 69999999
Q ss_pred EEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchhhhccccCCh
Q 047700 372 LLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPK 451 (629)
Q Consensus 372 ~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~ 451 (629)
+|++++| .+..+|...++++++|+.|++++|.+....+. ....+.+|+.|++++|.+.. ++.
T Consensus 127 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~-----~~~ 188 (597)
T 3oja_B 127 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD------------TFQATTSLQNLQLSSNRLTH-----VDL 188 (597)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT------------TTTTCTTCCEEECTTSCCSB-----CCG
T ss_pred EEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChh------------hhhcCCcCcEEECcCCCCCC-----cCh
Confidence 9999998 77888887679999999999999987643221 12235889999999999884 346
Q ss_pred hhhcccceeeeccCCCCceeeccccccCchhhhh----------hccccCceeeeEEEecCCCCccccchHHHhcccCcc
Q 047700 452 HLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE----------LRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLM 521 (629)
Q Consensus 452 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~----------~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~ 521 (629)
..+++|+.|.+.++..... ..+.+|+.|. ...+++|+. |++++| .++.. ..+..+++|+
T Consensus 189 ~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~~~~L~~--L~L~~n-~l~~~---~~l~~l~~L~ 257 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPVNVELTI--LKLQHN-NLTDT---AWLLNYPGLV 257 (597)
T ss_dssp GGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECSCCSCCCE--EECCSS-CCCCC---GGGGGCTTCS
T ss_pred hhhhhhhhhhcccCccccc-----cCCchhheeeccCCcccccccccCCCCCE--EECCCC-CCCCC---hhhccCCCCC
Confidence 6788999999988744332 2233455554 334568999 999996 45543 4578999999
Q ss_pred eEEEecccccceeccccccccccccccccccccccccccccceeccCCCeeecCCCceeeecCCCCccccCCCCCCchhh
Q 047700 522 KLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKVMIFSCGVSSTPRL 601 (629)
Q Consensus 522 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L 601 (629)
.|++++|......+.... .+++|+.|+|++ ..+..++. ....+|+|+.|++++|. +..+|.++..+++|
T Consensus 258 ~L~Ls~N~l~~~~~~~~~-------~l~~L~~L~Ls~-N~l~~l~~--~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L 326 (597)
T 3oja_B 258 EVDLSYNELEKIMYHPFV-------KMQRLERLYISN-NRLVALNL--YGQPIPTLKVLDLSHNH-LLHVERNQPQFDRL 326 (597)
T ss_dssp EEECCSSCCCEEESGGGT-------TCSSCCEEECTT-SCCCEEEC--SSSCCTTCCEEECCSSC-CCCCGGGHHHHTTC
T ss_pred EEECCCCccCCCCHHHhc-------CccCCCEEECCC-CCCCCCCc--ccccCCCCcEEECCCCC-CCccCcccccCCCC
Confidence 999999985544444443 589999999998 47777877 66789999999999985 56788888888899
Q ss_pred HHhhhccCCC
Q 047700 602 REVRKNWGLD 611 (629)
Q Consensus 602 ~~l~~~~~~~ 611 (629)
+.|. ..+|.
T Consensus 327 ~~L~-L~~N~ 335 (597)
T 3oja_B 327 ENLY-LDHNS 335 (597)
T ss_dssp SEEE-CCSSC
T ss_pred CEEE-CCCCC
Confidence 9888 54544
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=1e-20 Score=211.38 Aligned_cols=316 Identities=18% Similarity=0.142 Sum_probs=191.1
Q ss_pred CCeeeccccccccccceEEeccCCCCCCCCCC-CCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEcCCcC
Q 047700 257 NDVLVGWLNNDVLKNCSAVSLNDIEIGVLPKG-LEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQCV 334 (629)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~lp~~-~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~ 334 (629)
+..+...+. ...+++++|++++|.+..+|.. +.. +++|++|++++|.+..+ |..++++++|++|++++|.
T Consensus 13 ~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~-------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 13 HLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTR-------YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGG-------GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhC-------CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 333444343 3457899999999988887753 322 78999999999998865 6678899999999999999
Q ss_pred CCC-cc-cccCccccceeeccCCCCccCc-hhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccC
Q 047700 335 LGD-IS-IIGNLEKLENLSLVDSDIEWLP-NEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEG 411 (629)
Q Consensus 335 l~~-~~-~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~ 411 (629)
+.. |+ .++++++|++|++++|+++.+| ..++++++|++|++++| .+...+...++++++|++|++++|.+....+.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccccCHH
Confidence 888 33 5889999999999999998876 56889999999999998 44444444478899999999998876532110
Q ss_pred CCcccccccccccC-ccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccc---cccCchhhhh--
Q 047700 412 KEGGAEASATFVFP-KVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSL---QRFHNMEKLE-- 485 (629)
Q Consensus 412 ~~~~~~~~~~~~~p-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~-- 485 (629)
. +. ....+|+.|++++|.+.......+ ..+++|+.|.+.++.........+ -...+|+.|.
T Consensus 164 ~-----------~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~ 230 (680)
T 1ziw_A 164 E-----------LDIFANSSLKKLELSSNQIKEFSPGCF--HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230 (680)
T ss_dssp H-----------HGGGTTCEESEEECTTCCCCCBCTTGG--GGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred H-----------hhccccccccEEECCCCcccccChhhh--hhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence 0 00 013678999999888775432211 223344444443322110000000 0001111111
Q ss_pred -----------hccc--cCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceecccccccccccccccccc
Q 047700 486 -----------LRQF--IQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLK 552 (629)
Q Consensus 486 -----------~~~~--~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~ 552 (629)
...+ ++|+. |++++|. ++.+++ ..++.+++|+.|++++|......+.... .+++|+
T Consensus 231 ~n~l~~~~~~~~~~l~~~~L~~--L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~ 299 (680)
T 1ziw_A 231 NSQLSTTSNTTFLGLKWTNLTM--LDLSYNN-LNVVGN-DSFAWLPQLEYFFLEYNNIQHLFSHSLH-------GLFNVR 299 (680)
T ss_dssp TSCCCEECTTTTGGGGGSCCCE--EECTTSC-CCEECT-TTTTTCTTCCEEECCSCCBSEECTTTTT-------TCTTCC
T ss_pred CCcccccChhHhhccCcCCCCE--EECCCCC-cCccCc-ccccCcccccEeeCCCCccCccChhhhc-------CCCCcc
Confidence 1122 34777 7777753 444432 3456777888888877764333332222 467777
Q ss_pred ccccccccccc-----eecc--CCCeeecCCCceeeecCCCCccccCCCCCCchhhHHhh
Q 047700 553 WLSLECLESLT-----SFCS--GNCTFKFPSLEDLFVIDCPKVMIFSCGVSSTPRLREVR 605 (629)
Q Consensus 553 ~L~l~~~~~l~-----~~~~--~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~l~ 605 (629)
.|++.++..-. .+|. ......+++|++|++.+|.--...|..+..+++|++|.
T Consensus 300 ~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 359 (680)
T 1ziw_A 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359 (680)
T ss_dssp EEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEE
T ss_pred EEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEE
Confidence 77776532111 1110 00234566777777766643332233466666666665
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=3.3e-20 Score=211.72 Aligned_cols=146 Identities=19% Similarity=0.136 Sum_probs=111.5
Q ss_pred EEEeCCeeeccccccccccceEEeccCCCCCCCCC-CCCCCCcchhccCCccEEEecCCcc-ccc-chhhhcccCCcEEE
Q 047700 253 ITVRNDVLVGWLNNDVLKNCSAVSLNDIEIGVLPK-GLEYPQLEFFWMSKLRGLALSKMQL-LSL-PQSVHLLSNLQTLC 329 (629)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~lp~-~~~~~~l~~l~~~~L~~L~l~~~~~-~~l-p~~l~~l~~L~~L~ 329 (629)
....+..+..++. .+++++.|++++|.+..+++ .+.. +++|++|++++|.. ..+ |..+.++++|++|+
T Consensus 9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~-------l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPF-------LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79 (844)
T ss_dssp EEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSS-------CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred EEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcc-------cccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence 3344445555555 67899999999999877643 3333 88999999999854 355 67788999999999
Q ss_pred cCCcCCCC--cccccCccccceeeccCCCCcc-Cchh--hhcCccccEEeecCCCCCCccChhhhhcCccCceEEecccc
Q 047700 330 LDQCVLGD--ISIIGNLEKLENLSLVDSDIEW-LPNE--IGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTF 404 (629)
Q Consensus 330 l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~ 404 (629)
|++|.+.. |..++++++|++|++++|.++. +|.. ++++++|++|++++|...+..+...++++++|++|++++|.
T Consensus 80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 99998887 5778899999999999998874 5554 78899999999999844443343348899999999999887
Q ss_pred ccc
Q 047700 405 VKW 407 (629)
Q Consensus 405 ~~~ 407 (629)
+..
T Consensus 160 i~~ 162 (844)
T 3j0a_A 160 IFL 162 (844)
T ss_dssp CCC
T ss_pred CCe
Confidence 654
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=2.3e-20 Score=197.14 Aligned_cols=175 Identities=20% Similarity=0.157 Sum_probs=128.9
Q ss_pred EeCCeeeccccccccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcC
Q 047700 255 VRNDVLVGWLNNDVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCV 334 (629)
Q Consensus 255 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~ 334 (629)
.++..+...+....+++++.|++++|.+..+| +.. +++|++|++++|.++.+| ++.+++|++|++++|.
T Consensus 49 Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~-------l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 49 CHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQ-------NTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp CCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTT-------CTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC
T ss_pred ccCCCcccChhhcccCCCCEEEccCCcCCeEc--ccc-------CCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc
Confidence 33344444444456788999999999988876 222 889999999999998876 7889999999999999
Q ss_pred CCCcccccCccccceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCc
Q 047700 335 LGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEG 414 (629)
Q Consensus 335 l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 414 (629)
++.++ ++.+++|++|++++|+++.+| ++++++|++|++++|..++.++ ++.+++|+.|++++|.+... +
T Consensus 118 l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l-~---- 186 (457)
T 3bz5_A 118 LTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL-D---- 186 (457)
T ss_dssp CSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC-C----
T ss_pred CCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee-c----
Confidence 88864 889999999999999998875 7889999999999987777763 67889999999998876541 1
Q ss_pred ccccccccccCccccCcceEEccCcchhhhccccCChhhhcccceeeeccCC
Q 047700 415 GAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDK 466 (629)
Q Consensus 415 ~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 466 (629)
...+++|+.|++++|.++.+ +...+++|+.|+++++.
T Consensus 187 ----------l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 187 ----------VSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp ----------CTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSC
T ss_pred ----------cccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCc
Confidence 11235566666666655532 23344555555555543
No 38
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=5.1e-20 Score=200.27 Aligned_cols=241 Identities=22% Similarity=0.180 Sum_probs=154.9
Q ss_pred ccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccccce
Q 047700 270 KNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLEN 349 (629)
Q Consensus 270 ~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~ 349 (629)
++++.|++.+|.+..+|.. +++|++|++++|.++.+|. .+++|++|++++|.++.++. .+++|++
T Consensus 61 ~~L~~L~L~~N~l~~lp~~----------l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~ 125 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPAL----------PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCK 125 (622)
T ss_dssp TTCSEEEECSCCCSCCCCC----------CTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCE
T ss_pred CCCcEEEecCCCCCCCCCc----------CCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCE
Confidence 5666777777666666651 5667777777777666665 45667777777776666433 4566677
Q ss_pred eeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCcccc
Q 047700 350 LSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVIS 429 (629)
Q Consensus 350 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 429 (629)
|++++|+++.+|.. +++|++|++++| .+..+|. .+.+|+.|++++|.+.. +|..++
T Consensus 126 L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~----------------l~~~~~ 181 (622)
T 3g06_A 126 LWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTS----------------LPMLPS 181 (622)
T ss_dssp EECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC----------------CCCCCT
T ss_pred EECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCC----------------CcccCC
Confidence 77777766666653 366677777766 4555553 24566666666665432 444456
Q ss_pred CcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCcccc
Q 047700 430 NLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNLV 509 (629)
Q Consensus 430 ~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~ 509 (629)
+|+.|++++|.++.+. ..+++|+.|.+.++..... ...+++|+. |+++++ .++.++
T Consensus 182 ~L~~L~Ls~N~l~~l~------~~~~~L~~L~L~~N~l~~l---------------~~~~~~L~~--L~Ls~N-~L~~lp 237 (622)
T 3g06_A 182 GLQELSVSDNQLASLP------TLPSELYKLWAYNNRLTSL---------------PALPSGLKE--LIVSGN-RLTSLP 237 (622)
T ss_dssp TCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSSC---------------CCCCTTCCE--EECCSS-CCSCCC
T ss_pred CCcEEECCCCCCCCCC------CccchhhEEECcCCccccc---------------CCCCCCCCE--EEccCC-ccCcCC
Confidence 6777777777766332 1235677777666532221 123467888 888874 566654
Q ss_pred chHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceeccCCCeeecCCCceeeecCCCCcc
Q 047700 510 SSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKVM 589 (629)
Q Consensus 510 ~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~ 589 (629)
..+++|+.|++++|. +..++. .+++|+.|++++| +++.+|. ....+++|+.|++++|+--.
T Consensus 238 -----~~l~~L~~L~Ls~N~-L~~lp~----------~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 238 -----VLPSELKELMVSGNR-LTSLPM----------LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp -----CCCTTCCEEECCSSC-CSCCCC----------CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCCCCH
T ss_pred -----CCCCcCcEEECCCCC-CCcCCc----------ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCCCCC
Confidence 456888888888875 555554 2688888888885 6667776 67788888888888887544
Q ss_pred ccC
Q 047700 590 IFS 592 (629)
Q Consensus 590 ~lp 592 (629)
..|
T Consensus 299 ~~~ 301 (622)
T 3g06_A 299 RTL 301 (622)
T ss_dssp HHH
T ss_pred cCH
Confidence 443
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=1.3e-20 Score=189.21 Aligned_cols=245 Identities=13% Similarity=0.137 Sum_probs=164.3
Q ss_pred ccceEEeccCCCCC---CCCCCCCCCCcchhccCCccEEEecC-Cccc-ccchhhhcccCCcEEEcCCcCCCC--ccccc
Q 047700 270 KNCSAVSLNDIEIG---VLPKGLEYPQLEFFWMSKLRGLALSK-MQLL-SLPQSVHLLSNLQTLCLDQCVLGD--ISIIG 342 (629)
Q Consensus 270 ~~l~~L~l~~~~~~---~lp~~~~~~~l~~l~~~~L~~L~l~~-~~~~-~lp~~l~~l~~L~~L~l~~~~l~~--~~~i~ 342 (629)
..++.|++.++.+. .+|..+.. +++|++|++++ |.+. .+|..++.+++|++|++++|.+.. |..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~-------l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN-------LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG-------CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhC-------CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh
Confidence 57888888888876 46665544 88899999985 7776 678888889999999999988874 66788
Q ss_pred CccccceeeccCCCCc-cCchhhhcCccccEEeecCCCCCCccChhhhhcCc-cCceEEeccccccccccCCCccccccc
Q 047700 343 NLEKLENLSLVDSDIE-WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLT-QLEELYMGNTFVKWEFEGKEGGAEASA 420 (629)
Q Consensus 343 ~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~ 420 (629)
++++|++|++++|.++ .+|..++++++|++|++++|...+.+|.. ++.++ +|+.|++++|.+....
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~----------- 190 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKI----------- 190 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEEC-----------
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccC-----------
Confidence 8899999999998888 77888888999999999888444467766 78887 8899998888765332
Q ss_pred ccccCccc--cCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEE
Q 047700 421 TFVFPKVI--SNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWR 498 (629)
Q Consensus 421 ~~~~p~~l--~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~ 498 (629)
|..+ -.|+.|++++|.+.......+ ..+++|+.|.+.++......+. ...+++|+. |+
T Consensus 191 ----~~~~~~l~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~------------~~~l~~L~~--L~ 250 (313)
T 1ogq_A 191 ----PPTFANLNLAFVDLSRNMLEGDASVLF--GSDKNTQKIHLAKNSLAFDLGK------------VGLSKNLNG--LD 250 (313)
T ss_dssp ----CGGGGGCCCSEEECCSSEEEECCGGGC--CTTSCCSEEECCSSEECCBGGG------------CCCCTTCCE--EE
T ss_pred ----ChHHhCCcccEEECcCCcccCcCCHHH--hcCCCCCEEECCCCceeeecCc------------ccccCCCCE--EE
Confidence 2222 127888888887764332222 3456666666665532211110 234456666 66
Q ss_pred EecCCCCccccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccc
Q 047700 499 VSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLT 563 (629)
Q Consensus 499 l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 563 (629)
++++.-...++ ..+..+++|+.|++++|...+.+|.. . .+++|+.|++.+++.+.
T Consensus 251 Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~ip~~-~-------~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 251 LRNNRIYGTLP--QGLTQLKFLHSLNVSFNNLCGEIPQG-G-------NLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CCSSCCEECCC--GGGGGCTTCCEEECCSSEEEEECCCS-T-------TGGGSCGGGTCSSSEEE
T ss_pred CcCCcccCcCC--hHHhcCcCCCEEECcCCcccccCCCC-c-------cccccChHHhcCCCCcc
Confidence 66643222322 23566667777777666644455443 1 46666666666655443
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=1.3e-20 Score=205.09 Aligned_cols=106 Identities=24% Similarity=0.248 Sum_probs=75.4
Q ss_pred cccccceEEeccCCCCCCCCC-CCCCCCcchhccCCccEEEecCCcccccchh-hhcccCCcEEEcCCcCCCC---cccc
Q 047700 267 DVLKNCSAVSLNDIEIGVLPK-GLEYPQLEFFWMSKLRGLALSKMQLLSLPQS-VHLLSNLQTLCLDQCVLGD---ISII 341 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~-~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~---~~~i 341 (629)
..++++++|++++|.+..+++ .+.. +++|++|++++|.+..+|.. ++.+++|++|++++|.+.. ++.+
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~-------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 119 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYS-------LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTT-------CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred hcCCcccEEECCCCCcCccChhhccc-------cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhh
Confidence 446778888888888877664 2333 77788888888887766544 7778888888888887764 3567
Q ss_pred cCccccceeeccCCC-CccCc-hhhhcCccccEEeecCCC
Q 047700 342 GNLEKLENLSLVDSD-IEWLP-NEIGELTQLRLLDLSSCW 379 (629)
Q Consensus 342 ~~l~~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~l~~~~ 379 (629)
+++++|++|++++|. +..+| ..++++++|++|++++|.
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 777777777777776 55555 356777777777777763
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=3.9e-20 Score=186.80 Aligned_cols=219 Identities=20% Similarity=0.278 Sum_probs=163.0
Q ss_pred cccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cccccCcccc
Q 047700 269 LKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLEKL 347 (629)
Q Consensus 269 ~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~~L 347 (629)
...++.|++.++.+..+|..+.. +++|++|++++|.++.+|..++.+++|++|++++|.+.. |+.++++++|
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~-------l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFR-------LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGG-------GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred ccceeEEEccCCCchhcChhhhh-------CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCC
Confidence 35789999999999999987654 899999999999999999999999999999999999988 6789999999
Q ss_pred ceeeccCCC-CccCchhhhc---------CccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccc
Q 047700 348 ENLSLVDSD-IEWLPNEIGE---------LTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAE 417 (629)
Q Consensus 348 ~~L~l~~~~-l~~lp~~i~~---------l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 417 (629)
++|++++|+ +..+|..++. +++|++|++++| .++.+|.. ++++++|++|++++|.+..
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~-l~~l~~L~~L~L~~N~l~~---------- 220 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS-IANLQNLKSLKIRNSPLSA---------- 220 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG-GGGCTTCCEEEEESSCCCC----------
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh-hcCCCCCCEEEccCCCCCc----------
Confidence 999999975 4478877654 999999999998 67788887 8999999999999997653
Q ss_pred cccccccCccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeE
Q 047700 418 ASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKW 497 (629)
Q Consensus 418 ~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L 497 (629)
+|..+ ..+++|+.|++++|......+.. ...+++|+. |
T Consensus 221 ------l~~~l-----------------------~~l~~L~~L~Ls~n~~~~~~p~~-----------~~~l~~L~~--L 258 (328)
T 4fcg_A 221 ------LGPAI-----------------------HHLPKLEELDLRGCTALRNYPPI-----------FGGRAPLKR--L 258 (328)
T ss_dssp ------CCGGG-----------------------GGCTTCCEEECTTCTTCCBCCCC-----------TTCCCCCCE--E
T ss_pred ------Cchhh-----------------------ccCCCCCEEECcCCcchhhhHHH-----------hcCCCCCCE--E
Confidence 22211 12334444444444333322222 234566667 7
Q ss_pred EEecCCCCccccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccc
Q 047700 498 RVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLE 557 (629)
Q Consensus 498 ~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 557 (629)
++++|.....++. .++++++|+.|++++|+..+.+|.... .+++|+.+.+.
T Consensus 259 ~L~~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~iP~~l~-------~L~~L~~l~l~ 309 (328)
T 4fcg_A 259 ILKDCSNLLTLPL--DIHRLTQLEKLDLRGCVNLSRLPSLIA-------QLPANCIILVP 309 (328)
T ss_dssp ECTTCTTCCBCCT--TGGGCTTCCEEECTTCTTCCCCCGGGG-------GSCTTCEEECC
T ss_pred ECCCCCchhhcch--hhhcCCCCCEEeCCCCCchhhccHHHh-------hccCceEEeCC
Confidence 7777666666542 356777777777777777777665544 36666666655
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=9.9e-20 Score=203.41 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=114.2
Q ss_pred EEEeCCeeecccc--ccccccceEEeccCCCCCCCCCC-CCCCCcchhccCCccEEEecCCcccccch-hhhcccCCcEE
Q 047700 253 ITVRNDVLVGWLN--NDVLKNCSAVSLNDIEIGVLPKG-LEYPQLEFFWMSKLRGLALSKMQLLSLPQ-SVHLLSNLQTL 328 (629)
Q Consensus 253 ~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~lp~~-~~~~~l~~l~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L 328 (629)
...+++.+...+. ....++++.|++++|.+..+++. +.. +++|++|++++|.++.+|. .++.+++|++|
T Consensus 30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK-------LPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH-------CTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhc-------ccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 3444444444333 24568899999999998877543 222 8899999999999998886 58999999999
Q ss_pred EcCCcCCCC--cccccCccccceeeccCCCCccC-chhhhcCccccEEeecCCCCCCccChhhhh--cCccCceEEeccc
Q 047700 329 CLDQCVLGD--ISIIGNLEKLENLSLVDSDIEWL-PNEIGELTQLRLLDLSSCWNLKVIPPNVIS--KLTQLEELYMGNT 403 (629)
Q Consensus 329 ~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~i~--~l~~L~~L~l~~~ 403 (629)
++++|.+.. +..++++++|++|++++|.++.. |..++++++|++|++++| .+..++...+. .+++|+.|++++|
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCC
Confidence 999999988 35689999999999999988865 456788999999999998 56666655444 4588999999998
Q ss_pred cccc
Q 047700 404 FVKW 407 (629)
Q Consensus 404 ~~~~ 407 (629)
.+..
T Consensus 182 ~l~~ 185 (680)
T 1ziw_A 182 QIKE 185 (680)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7654
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=7e-20 Score=185.75 Aligned_cols=272 Identities=16% Similarity=0.147 Sum_probs=199.2
Q ss_pred ccccceEEeccCCCCCCCCC-CCCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEcCCcCCCC-cccccCc
Q 047700 268 VLKNCSAVSLNDIEIGVLPK-GLEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQCVLGD-ISIIGNL 344 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~~lp~-~~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~-~~~i~~l 344 (629)
..+.++.|++.+|.+..+++ .+.. +++|++|++++|.++.+ |..+..+++|++|++++|.+.. |..+.
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~-------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-- 122 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKG-------LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-- 122 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTT-------CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--
T ss_pred CCCCCeEEECCCCcCCccCHhHhhC-------CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--
Confidence 45789999999999988864 3433 89999999999999976 7789999999999999999988 55554
Q ss_pred cccceeeccCCCCccCchh-hhcCccccEEeecCCCCCCc--cChhhhhcCccCceEEeccccccccccCCCcccccccc
Q 047700 345 EKLENLSLVDSDIEWLPNE-IGELTQLRLLDLSSCWNLKV--IPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASAT 421 (629)
Q Consensus 345 ~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~--~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 421 (629)
++|++|++++|.++.+|.. ++++++|++|++++| .++. .+...+..+ +|+.|++++|.+..
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-------------- 186 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAKLTG-------------- 186 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSBCSS--------------
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCCCCc--------------
Confidence 8999999999999988764 789999999999998 4432 333336777 99999999998653
Q ss_pred cccCccc-cCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEe
Q 047700 422 FVFPKVI-SNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVS 500 (629)
Q Consensus 422 ~~~p~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~ 500 (629)
+|..+ .+|+.|++++|.+....... ...+++|+.|++.++......+.. ...+++|+. |+++
T Consensus 187 --l~~~~~~~L~~L~l~~n~i~~~~~~~--l~~l~~L~~L~L~~N~l~~~~~~~-----------~~~l~~L~~--L~L~ 249 (332)
T 2ft3_A 187 --IPKDLPETLNELHLDHNKIQAIELED--LLRYSKLYRLGLGHNQIRMIENGS-----------LSFLPTLRE--LHLD 249 (332)
T ss_dssp --CCSSSCSSCSCCBCCSSCCCCCCTTS--STTCTTCSCCBCCSSCCCCCCTTG-----------GGGCTTCCE--EECC
T ss_pred --cCccccCCCCEEECCCCcCCccCHHH--hcCCCCCCEEECCCCcCCcCChhH-----------hhCCCCCCE--EECC
Confidence 33333 68999999999998654322 245788999999987544432222 456789999 9999
Q ss_pred cCCCCccccchHHHhcccCcceEEEecccccceecccccccccccccccccccccccccccc--ceeccCCCeeecCCCc
Q 047700 501 YCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESL--TSFCSGNCTFKFPSLE 578 (629)
Q Consensus 501 ~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~~~~~~~~~~~p~L~ 578 (629)
++ .++.++. .+..+++|+.|++++|. ++.++............+++|+.|++.+++-. ...+. ....+++|+
T Consensus 250 ~N-~l~~lp~--~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~--~~~~l~~L~ 323 (332)
T 2ft3_A 250 NN-KLSRVPA--GLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA--TFRCVTDRL 323 (332)
T ss_dssp SS-CCCBCCT--TGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG--GGTTBCCST
T ss_pred CC-cCeecCh--hhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcc--cccccchhh
Confidence 95 6667654 37889999999999987 55554332210011113688999999997643 11222 345678889
Q ss_pred eeeecCCCC
Q 047700 579 DLFVIDCPK 587 (629)
Q Consensus 579 ~L~i~~c~~ 587 (629)
.+.+.+|.+
T Consensus 324 ~l~l~~n~~ 332 (332)
T 2ft3_A 324 AIQFGNYKK 332 (332)
T ss_dssp TEEC-----
T ss_pred hhhcccccC
Confidence 888887753
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=204.44 Aligned_cols=142 Identities=13% Similarity=0.072 Sum_probs=84.4
Q ss_pred hhcccceeeeccCCCCceeeccccccCchhhhh--------------hccccCceeeeEEEecCCCCccccchHHHhccc
Q 047700 453 LFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE--------------LRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLV 518 (629)
Q Consensus 453 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~--------------~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~ 518 (629)
.+++|++|.+.++....... .+..+++|+.|. ...+++|+. |++++|...... + ..+.+++
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~--L~l~~n~l~~~~-~-~~~~~l~ 445 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY--LDISHTHTRVAF-N-GIFNGLS 445 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE--EECTTSCCEECC-T-TTTTTCT
T ss_pred ccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCE--EeCcCCcccccc-h-hhhhcCC
Confidence 34455555555543322222 244445555544 234566777 777775432222 2 3456677
Q ss_pred CcceEEEeccccc-ceecccccccccccccccccccccccccccccee-ccCCCeeecCCCceeeecCCCCccccCC-CC
Q 047700 519 HLMKLRIGGCKLM-TEIISSEEDVEEDEVVFSRLKWLSLECLESLTSF-CSGNCTFKFPSLEDLFVIDCPKVMIFSC-GV 595 (629)
Q Consensus 519 ~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~p~L~~L~i~~c~~L~~lp~-~~ 595 (629)
+|+.|++.+|... ..++.... .+++|+.|++++|. +..+ +. ....+++|++|++++|. +..+|. .+
T Consensus 446 ~L~~L~l~~n~l~~~~~p~~~~-------~l~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~ 514 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLPDIFT-------ELRNLTFLDLSQCQ-LEQLSPT--AFNSLSSLQVLNMASNQ-LKSVPDGIF 514 (570)
T ss_dssp TCCEEECTTCEEGGGEECSCCT-------TCTTCCEEECTTSC-CCEECTT--TTTTCTTCCEEECCSSC-CSCCCTTTT
T ss_pred cCcEEECcCCcCccccchhhhh-------cccCCCEEECCCCc-cccCChh--hhhcccCCCEEeCCCCc-CCCCCHHHh
Confidence 7888887777644 23443333 57888888888864 4444 44 45678888999888884 555554 47
Q ss_pred CCchhhHHhhhccCCC
Q 047700 596 SSTPRLREVRKNWGLD 611 (629)
Q Consensus 596 ~~l~~L~~l~~~~~~~ 611 (629)
.++++|++|+ ..+++
T Consensus 515 ~~l~~L~~L~-l~~N~ 529 (570)
T 2z63_A 515 DRLTSLQKIW-LHTNP 529 (570)
T ss_dssp TTCTTCCEEE-CCSSC
T ss_pred hcccCCcEEE-ecCCc
Confidence 8888888887 44443
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=4.4e-20 Score=210.65 Aligned_cols=150 Identities=19% Similarity=0.195 Sum_probs=118.6
Q ss_pred eEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEcCCcCCCC---cccccCccccc
Q 047700 273 SAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQCVLGD---ISIIGNLEKLE 348 (629)
Q Consensus 273 ~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~ 348 (629)
+..+.+++++..+|. + .++|++|+|++|.++.+ |..+..+++|++|++++|.... +..++++++|+
T Consensus 7 ~~~dcs~~~L~~vP~-l---------p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~ 76 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-V---------LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR 76 (844)
T ss_dssp EEEEESCCCSSCCCS-S---------CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC
T ss_pred eEEEccCCCCCCCCC-C---------CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC
Confidence 466778888999997 3 78999999999999965 6789999999999999996544 56799999999
Q ss_pred eeeccCCCCccC-chhhhcCccccEEeecCCCCCCccCh-hhhhcCccCceEEeccccccccccCCCcccccccccccCc
Q 047700 349 NLSLVDSDIEWL-PNEIGELTQLRLLDLSSCWNLKVIPP-NVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPK 426 (629)
Q Consensus 349 ~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~ 426 (629)
+|++++|+++.+ |..++++++|++|++++|...+..|. ..++++++|++|++++|.+....... .-.
T Consensus 77 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-----------~~~ 145 (844)
T 3j0a_A 77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP-----------SFG 145 (844)
T ss_dssp EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG-----------GGG
T ss_pred EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch-----------hHh
Confidence 999999999966 78899999999999999954443443 33789999999999999875432110 112
Q ss_pred cccCcceEEccCcchhh
Q 047700 427 VISNLEELKLGGKDITM 443 (629)
Q Consensus 427 ~l~~L~~L~L~~~~~~~ 443 (629)
.+++|+.|++++|.+..
T Consensus 146 ~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 146 KLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp TCSSCCEEEEESSCCCC
T ss_pred hCCCCCEEECCCCcCCe
Confidence 35667777777776653
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=2.5e-19 Score=181.59 Aligned_cols=273 Identities=15% Similarity=0.138 Sum_probs=199.5
Q ss_pred ccccceEEeccCCCCCCCCCC-CCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEcCCcCCCC-cccccCc
Q 047700 268 VLKNCSAVSLNDIEIGVLPKG-LEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQCVLGD-ISIIGNL 344 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~~lp~~-~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~-~~~i~~l 344 (629)
..+.++.|+++++.+..++.. +.. +++|++|++++|.++.+ |..+..+++|++|++++|.++. |..+.
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~-------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-- 120 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKN-------LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-- 120 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTT-------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--
T ss_pred CCCCCeEEECCCCcCCEeChhhhcc-------CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--
Confidence 457899999999999888763 333 89999999999999977 7889999999999999999988 44444
Q ss_pred cccceeeccCCCCccCch-hhhcCccccEEeecCCCCCC-ccChhhhhcCccCceEEeccccccccccCCCccccccccc
Q 047700 345 EKLENLSLVDSDIEWLPN-EIGELTQLRLLDLSSCWNLK-VIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATF 422 (629)
Q Consensus 345 ~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~-~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 422 (629)
++|++|++++|.++.++. .+.++++|++|++++|.... ......+.++++|+.|++++|.+..
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--------------- 185 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--------------- 185 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS---------------
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc---------------
Confidence 799999999999998765 57899999999999984321 1333348999999999999998653
Q ss_pred ccCccc-cCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEec
Q 047700 423 VFPKVI-SNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSY 501 (629)
Q Consensus 423 ~~p~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~ 501 (629)
+|..+ ++|+.|++++|.++...... ...+++|++|+++++......+.. ...+++|+. |++++
T Consensus 186 -l~~~~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~-----------~~~l~~L~~--L~L~~ 249 (330)
T 1xku_A 186 -IPQGLPPSLTELHLDGNKITKVDAAS--LKGLNNLAKLGLSFNSISAVDNGS-----------LANTPHLRE--LHLNN 249 (330)
T ss_dssp -CCSSCCTTCSEEECTTSCCCEECTGG--GTTCTTCCEEECCSSCCCEECTTT-----------GGGSTTCCE--EECCS
T ss_pred -CCccccccCCEEECCCCcCCccCHHH--hcCCCCCCEEECCCCcCceeChhh-----------ccCCCCCCE--EECCC
Confidence 33332 78999999999988653222 245788999999987644433222 456788999 99999
Q ss_pred CCCCccccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceeccC-CCeeecCCCcee
Q 047700 502 CKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSG-NCTFKFPSLEDL 580 (629)
Q Consensus 502 c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~p~L~~L 580 (629)
+ .++.++. .+..+++|++|++++|+ ++.++............++.|+.|++.+++- ..+... .....+++|+.+
T Consensus 250 N-~l~~lp~--~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~-~~~~i~~~~f~~~~~l~~l 324 (330)
T 1xku_A 250 N-KLVKVPG--GLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV-QYWEIQPSTFRCVYVRAAV 324 (330)
T ss_dssp S-CCSSCCT--TTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS-CGGGSCGGGGTTCCCGGGE
T ss_pred C-cCccCCh--hhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcc-cccccCccccccccceeEE
Confidence 6 5666653 36889999999999997 5555443221111112358889999998653 322220 133446677888
Q ss_pred eecCC
Q 047700 581 FVIDC 585 (629)
Q Consensus 581 ~i~~c 585 (629)
+++++
T Consensus 325 ~L~~N 329 (330)
T 1xku_A 325 QLGNY 329 (330)
T ss_dssp EC---
T ss_pred Eeccc
Confidence 77665
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=1.4e-20 Score=188.93 Aligned_cols=246 Identities=14% Similarity=0.111 Sum_probs=168.9
Q ss_pred CCccEEEecCCccc---ccchhhhcccCCcEEEcCC-cCCCC--cccccCccccceeeccCCCCc-cCchhhhcCccccE
Q 047700 300 SKLRGLALSKMQLL---SLPQSVHLLSNLQTLCLDQ-CVLGD--ISIIGNLEKLENLSLVDSDIE-WLPNEIGELTQLRL 372 (629)
Q Consensus 300 ~~L~~L~l~~~~~~---~lp~~l~~l~~L~~L~l~~-~~l~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~ 372 (629)
.+++.|++++|.+. .+|..+.++++|++|++++ |.+.. |..++++++|++|++++|.++ .+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999998 5899999999999999995 77765 778999999999999999998 88999999999999
Q ss_pred EeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccc---c-CcceEEccCcchhhhcccc
Q 047700 373 LDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVI---S-NLEELKLGGKDITMICQDH 448 (629)
Q Consensus 373 L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l---~-~L~~L~L~~~~~~~~~~~~ 448 (629)
|++++|...+.+|.. ++++++|++|++++|.+... +|..+ . +|+.|++++|.+.......
T Consensus 130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~---------------~p~~l~~l~~~L~~L~L~~N~l~~~~~~~ 193 (313)
T 1ogq_A 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGA---------------IPDSYGSFSKLFTSMTISRNRLTGKIPPT 193 (313)
T ss_dssp EECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEE---------------CCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred EeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCc---------------CCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence 999999555577776 89999999999999987533 33322 3 7888889888876322211
Q ss_pred CChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecc
Q 047700 449 LPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGC 528 (629)
Q Consensus 449 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c 528 (629)
+ ..++ |+.|+++++......+.. +..+++|+. |+++++. ++... ..+..+++|++|++++|
T Consensus 194 ~--~~l~-L~~L~Ls~N~l~~~~~~~-----------~~~l~~L~~--L~L~~N~-l~~~~--~~~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 194 F--ANLN-LAFVDLSRNMLEGDASVL-----------FGSDKNTQK--IHLAKNS-LAFDL--GKVGLSKNLNGLDLRNN 254 (313)
T ss_dssp G--GGCC-CSEEECCSSEEEECCGGG-----------CCTTSCCSE--EECCSSE-ECCBG--GGCCCCTTCCEEECCSS
T ss_pred H--hCCc-ccEEECcCCcccCcCCHH-----------HhcCCCCCE--EECCCCc-eeeec--CcccccCCCCEEECcCC
Confidence 1 2222 667776665322221111 234556666 6666643 22221 12455667777777766
Q ss_pred cccceeccccccccccccccccccccccccccccceeccCCCeeecCCCceeeecCCCCccc
Q 047700 529 KLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKVMI 590 (629)
Q Consensus 529 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~ 590 (629)
.....++.... .+++|+.|+++++.-...+|. ...+++|+.+.+.+++.+..
T Consensus 255 ~l~~~~p~~l~-------~l~~L~~L~Ls~N~l~~~ip~---~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 255 RIYGTLPQGLT-------QLKFLHSLNVSFNNLCGEIPQ---GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCEECCCGGGG-------GCTTCCEEECCSSEEEEECCC---STTGGGSCGGGTCSSSEEES
T ss_pred cccCcCChHHh-------cCcCCCEEECcCCcccccCCC---CccccccChHHhcCCCCccC
Confidence 64434444332 466666666666543334444 25566666666666665544
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=194.61 Aligned_cols=143 Identities=14% Similarity=0.088 Sum_probs=105.7
Q ss_pred hhhcccceeeeccCCCCceeeccccccCchhhhh---------------hccccCceeeeEEEecCCCCccccchHHHhc
Q 047700 452 HLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE---------------LRQFIQRDIFKWRVSYCKRLKNLVSSFTAKS 516 (629)
Q Consensus 452 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~---------------~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~ 516 (629)
..+++|++|+++++......+..+..+++|+.|. ...+++|+. |+++++.-...++. ..+..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~--L~Ls~N~l~~~l~~-~~~~~ 397 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ--LDISQNSVSYDEKK-GDCSW 397 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE--EECCSSCCBCCGGG-CSCCC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCE--EECCCCcCCccccc-chhcc
Confidence 4567788888887765554455556666666665 456789999 99999654332542 34677
Q ss_pred ccCcceEEEecccccceeccccccccccccccccccccccccccccceeccCCCeeecCCCceeeecCCCCccccCCC-C
Q 047700 517 LVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKVMIFSCG-V 595 (629)
Q Consensus 517 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~-~ 595 (629)
+++|+.|++++|......+... .++|+.|++++| +++.+|. ....+++|+.|++++| +++.+|.. +
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l---------~~~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L~L~~N-~l~~l~~~~~ 464 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCL---------PPRIKVLDLHSN-KIKSIPK--QVVKLEALQELNVASN-QLKSVPDGIF 464 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSC---------CTTCCEEECCSS-CCCCCCG--GGGGCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CccCCEEECcCCCCCcchhhhh---------cccCCEEECCCC-cccccch--hhhcCCCCCEEECCCC-cCCccCHHHh
Confidence 8999999999998554443321 279999999996 6778887 6679999999999998 57789887 8
Q ss_pred CCchhhHHhhhccCCC
Q 047700 596 SSTPRLREVRKNWGLD 611 (629)
Q Consensus 596 ~~l~~L~~l~~~~~~~ 611 (629)
..+++|+++. ..+++
T Consensus 465 ~~l~~L~~L~-l~~N~ 479 (520)
T 2z7x_B 465 DRLTSLQKIW-LHTNP 479 (520)
T ss_dssp TTCTTCCEEE-CCSSC
T ss_pred ccCCcccEEE-CcCCC
Confidence 8999999998 55544
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=1.3e-19 Score=200.87 Aligned_cols=139 Identities=22% Similarity=0.284 Sum_probs=116.9
Q ss_pred eeeccccccccccceEEeccCCCCCCCCCC-CCCCCcchhccCCccEEEecCCcccccch-hhhcccCCcEEEcCCcCCC
Q 047700 259 VLVGWLNNDVLKNCSAVSLNDIEIGVLPKG-LEYPQLEFFWMSKLRGLALSKMQLLSLPQ-SVHLLSNLQTLCLDQCVLG 336 (629)
Q Consensus 259 ~~~~~~~~~~~~~l~~L~l~~~~~~~lp~~-~~~~~l~~l~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~ 336 (629)
.+..+|. ..+..+++|++++|.+..+|+. +.. +++|++|+|++|+++.+|+ .|..+++|++|+|++|.++
T Consensus 42 ~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~-------l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 42 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFS-------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp CCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTT-------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhC-------CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 4444443 4567899999999999998853 333 8999999999999998865 5899999999999999999
Q ss_pred C-c-ccccCccccceeeccCCCCccCch-hhhcCccccEEeecCCCCCCc--cChhhhhcCccCceEEeccccccc
Q 047700 337 D-I-SIIGNLEKLENLSLVDSDIEWLPN-EIGELTQLRLLDLSSCWNLKV--IPPNVISKLTQLEELYMGNTFVKW 407 (629)
Q Consensus 337 ~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--~p~~~i~~l~~L~~L~l~~~~~~~ 407 (629)
. | ..|+++++|++|++++|+++.+|. .++++++|++|++++| .+.. .|.. ++.+++|++|++++|.+..
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchh-hccchhhhhhcccCccccc
Confidence 8 4 458999999999999999999886 4799999999999998 4443 4554 8899999999999998764
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=4.3e-19 Score=175.76 Aligned_cols=220 Identities=20% Similarity=0.267 Sum_probs=164.2
Q ss_pred eEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccc-hhhhcccCCcEEEcCCcCCCC--cccccCccccce
Q 047700 273 SAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLP-QSVHLLSNLQTLCLDQCVLGD--ISIIGNLEKLEN 349 (629)
Q Consensus 273 ~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~ 349 (629)
+.++..++.+..+|..+ .++|++|++++|.++.+| ..+..+++|++|++++|.+.. +..++.+++|++
T Consensus 14 ~~~~c~~~~l~~ip~~~---------~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 84 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---------PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ 84 (285)
T ss_dssp CEEECCSSCCSSCCTTC---------CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred eEEEcCcCCcccCCcCC---------CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCE
Confidence 67788888888888654 678999999999998776 468889999999999998887 467888999999
Q ss_pred eeccCCC-CccC-chhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCcc
Q 047700 350 LSLVDSD-IEWL-PNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKV 427 (629)
Q Consensus 350 L~l~~~~-l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~ 427 (629)
|++++|. ++.+ |..+..+++|++|++++| .+..++...+.++++|++|++++|.+....+. ....
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~ 151 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDD------------TFRD 151 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTT
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCHh------------Hhcc
Confidence 9999996 8877 667888999999999998 55556555588899999999998876532111 1223
Q ss_pred ccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCcc
Q 047700 428 ISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKN 507 (629)
Q Consensus 428 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~ 507 (629)
+++|+.|++++|.++.+....+ ..+++|++|.+.++......+.. +..+++|+. |+++++ .++.
T Consensus 152 l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-----------~~~l~~L~~--L~l~~n-~l~~ 215 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPERAF--RGLHSLDRLLLHQNRVAHVHPHA-----------FRDLGRLMT--LYLFAN-NLSA 215 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCEECTTT-----------TTTCTTCCE--EECCSS-CCSC
T ss_pred CCCccEEECCCCcccccCHHHh--cCccccCEEECCCCcccccCHhH-----------ccCcccccE--eeCCCC-cCCc
Confidence 5788899999888875543322 35678888888887544433322 345678888 888885 5566
Q ss_pred ccchHHHhcccCcceEEEeccccc
Q 047700 508 LVSSFTAKSLVHLMKLRIGGCKLM 531 (629)
Q Consensus 508 l~~~~~l~~l~~L~~L~l~~c~~l 531 (629)
+++ ..+..+++|+.|++++|+..
T Consensus 216 ~~~-~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 216 LPT-EALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCH-HHHTTCTTCCEEECCSSCEE
T ss_pred CCH-HHcccCcccCEEeccCCCcc
Confidence 543 55788899999999888743
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=5.2e-19 Score=187.28 Aligned_cols=240 Identities=19% Similarity=0.204 Sum_probs=115.8
Q ss_pred eEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEcCCcCCCC--cccccCccccce
Q 047700 273 SAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQCVLGD--ISIIGNLEKLEN 349 (629)
Q Consensus 273 ~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~ 349 (629)
+.++..+..+..+|..+ .+++++|+|++|.++.+ |..|..+++|++|++++|.+.. +..+.++++|++
T Consensus 57 ~~v~c~~~~l~~iP~~~---------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 127 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI---------PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT 127 (452)
T ss_dssp CEEECCSSCCSSCCSCC---------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cEEEECCCCcCccCCCC---------CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCE
Confidence 34455555555555433 34555566666555544 3445555566666666655555 234555556666
Q ss_pred eeccCCCCccCchh-hhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccc
Q 047700 350 LSLVDSDIEWLPNE-IGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVI 428 (629)
Q Consensus 350 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l 428 (629)
|++++|+++.+|.. ++.+++|++|++++| .+..+|...+.++++|+.|++++|......+. .....+
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-----------~~~~~l 195 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISE-----------GAFEGL 195 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECT-----------TTTTTC
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccCh-----------hhccCC
Confidence 66666555555443 455556666666555 44455544455555666666555432211110 011123
Q ss_pred cCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCccc
Q 047700 429 SNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNL 508 (629)
Q Consensus 429 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l 508 (629)
.+|+.|++++|.++.+.. ...+++|+.|+++++......+.. +..+++|+. |+++++ .++.+
T Consensus 196 ~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~-----------~~~l~~L~~--L~L~~n-~l~~~ 257 (452)
T 3zyi_A 196 FNLKYLNLGMCNIKDMPN----LTPLVGLEELEMSGNHFPEIRPGS-----------FHGLSSLKK--LWVMNS-QVSLI 257 (452)
T ss_dssp TTCCEEECTTSCCSSCCC----CTTCTTCCEEECTTSCCSEECGGG-----------GTTCTTCCE--EECTTS-CCCEE
T ss_pred CCCCEEECCCCccccccc----ccccccccEEECcCCcCcccCccc-----------ccCccCCCE--EEeCCC-cCceE
Confidence 455555555555553321 233455555555555433322222 233445555 555552 33333
Q ss_pred cchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccc
Q 047700 509 VSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECL 559 (629)
Q Consensus 509 ~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 559 (629)
++ ..+.++++|+.|++++|. +..++..... .+++|+.|+|.++
T Consensus 258 ~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~------~l~~L~~L~L~~N 300 (452)
T 3zyi_A 258 ER-NAFDGLASLVELNLAHNN-LSSLPHDLFT------PLRYLVELHLHHN 300 (452)
T ss_dssp CT-TTTTTCTTCCEEECCSSC-CSCCCTTSST------TCTTCCEEECCSS
T ss_pred CH-HHhcCCCCCCEEECCCCc-CCccChHHhc------cccCCCEEEccCC
Confidence 22 234455555555555554 3333322211 3555555555543
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=4.5e-19 Score=192.86 Aligned_cols=255 Identities=21% Similarity=0.180 Sum_probs=197.3
Q ss_pred cceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCcccccee
Q 047700 271 NCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENL 350 (629)
Q Consensus 271 ~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L 350 (629)
+++.|+++++.+..+|..+ .++|++|++++|.++.+|. .+++|++|++++|.++.++. .+++|++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l---------~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L 106 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCL---------PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLEL 106 (622)
T ss_dssp CCCEEECCSSCCSCCCSCC---------CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEE
T ss_pred CCcEEEecCCCcCccChhh---------CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEE
Confidence 5788999999999888765 5789999999999998886 57889999999999888544 77899999
Q ss_pred eccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccC
Q 047700 351 SLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISN 430 (629)
Q Consensus 351 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~ 430 (629)
++++|+++.+|. .+++|+.|++++| .+..+|.. +++|++|++++|.+.. +|..+++
T Consensus 107 ~Ls~N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~----------------l~~~~~~ 162 (622)
T 3g06_A 107 SIFSNPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLAS----------------LPALPSE 162 (622)
T ss_dssp EECSCCCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSC----------------CCCCCTT
T ss_pred ECcCCcCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCC----------------cCCccCC
Confidence 999999998887 6788999999987 67777763 5889999999987643 5556688
Q ss_pred cceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCccccc
Q 047700 431 LEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNLVS 510 (629)
Q Consensus 431 L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~~ 510 (629)
|+.|++++|.++.+ | ..+++|+.|+++++.... . ...+++|+. |++++| .++.++.
T Consensus 163 L~~L~L~~N~l~~l-----~-~~~~~L~~L~Ls~N~l~~-l--------------~~~~~~L~~--L~L~~N-~l~~l~~ 218 (622)
T 3g06_A 163 LCKLWAYNNQLTSL-----P-MLPSGLQELSVSDNQLAS-L--------------PTLPSELYK--LWAYNN-RLTSLPA 218 (622)
T ss_dssp CCEEECCSSCCSCC-----C-CCCTTCCEEECCSSCCSC-C--------------CCCCTTCCE--EECCSS-CCSSCCC
T ss_pred CCEEECCCCCCCCC-----c-ccCCCCcEEECCCCCCCC-C--------------CCccchhhE--EECcCC-cccccCC
Confidence 99999999988853 3 446788999988764332 1 123467888 888884 5566543
Q ss_pred hHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceeccCCCeeecCCCceeeecCCCCccc
Q 047700 511 SFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKVMI 590 (629)
Q Consensus 511 ~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~ 590 (629)
.+++|+.|++++|. +..++ . .+++|+.|+++++ +++.+|. .+++|+.|++++| ++..
T Consensus 219 -----~~~~L~~L~Ls~N~-L~~lp---~-------~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~ 275 (622)
T 3g06_A 219 -----LPSGLKELIVSGNR-LTSLP---V-------LPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTR 275 (622)
T ss_dssp -----CCTTCCEEECCSSC-CSCCC---C-------CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCS
T ss_pred -----CCCCCCEEEccCCc-cCcCC---C-------CCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCc
Confidence 35889999999885 55555 1 4788999999985 6776654 6788999999888 5678
Q ss_pred cCCCCCCchhhHHhhhccCCC
Q 047700 591 FSCGVSSTPRLREVRKNWGLD 611 (629)
Q Consensus 591 lp~~~~~l~~L~~l~~~~~~~ 611 (629)
+|..+.++++|+.|. ..+++
T Consensus 276 lp~~l~~l~~L~~L~-L~~N~ 295 (622)
T 3g06_A 276 LPESLIHLSSETTVN-LEGNP 295 (622)
T ss_dssp CCGGGGGSCTTCEEE-CCSCC
T ss_pred CCHHHhhccccCEEE-ecCCC
Confidence 888888888888887 44443
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=4.1e-19 Score=181.68 Aligned_cols=265 Identities=19% Similarity=0.193 Sum_probs=163.3
Q ss_pred EeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccch-hhhcccCCcEEEcCCcCCCC--cccccCccccceee
Q 047700 275 VSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQ-SVHLLSNLQTLCLDQCVLGD--ISIIGNLEKLENLS 351 (629)
Q Consensus 275 L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~ 351 (629)
.+.+++.+..+|..+ .++|++|++++|.++.+|. .+..+++|++|++++|.++. +..++++++|++|+
T Consensus 36 c~~~~~~l~~iP~~~---------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL---------TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp EECCSTTCSSCCTTC---------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred eeCCCCCcccccccc---------cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 566777777777654 4678888888888877665 67788888888888888777 34577888888888
Q ss_pred ccCCCCccCchh-hhcCccccEEeecCCCCCCccCh-hhhhcCccCceEEeccccccccccCCCcccccccccccCcccc
Q 047700 352 LVDSDIEWLPNE-IGELTQLRLLDLSSCWNLKVIPP-NVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVIS 429 (629)
Q Consensus 352 l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 429 (629)
+++|.++.+|.. ++++++|++|++++| .+..+|. ..+.++++|+.|++++|........ ..-..+.
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-----------~~~~~l~ 174 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-----------KDFAGLT 174 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-----------TTTTTCC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCH-----------HHccCCC
Confidence 888888877765 677888888888887 5666665 3467788888888887742211110 0112245
Q ss_pred CcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCcccc
Q 047700 430 NLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNLV 509 (629)
Q Consensus 430 ~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~ 509 (629)
+|+.|++++|.+.......+ ..+++|++|.+.++.... .+... ...+++|+. |+++++ .++..+
T Consensus 175 ~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~-~~~~~----------~~~~~~L~~--L~L~~n-~l~~~~ 238 (353)
T 2z80_A 175 FLEELEIDASDLQSYEPKSL--KSIQNVSHLILHMKQHIL-LLEIF----------VDVTSSVEC--LELRDT-DLDTFH 238 (353)
T ss_dssp EEEEEEEEETTCCEECTTTT--TTCSEEEEEEEECSCSTT-HHHHH----------HHHTTTEEE--EEEESC-BCTTCC
T ss_pred CCCEEECCCCCcCccCHHHH--hccccCCeecCCCCcccc-chhhh----------hhhcccccE--EECCCC-cccccc
Confidence 67777777776664422222 345667777776654221 11100 234567777 777774 333322
Q ss_pred c--hHHHhcccCcceEEEecccccc----eeccccccccccccccccccccccccccccceeccCCCe-eecCCCceeee
Q 047700 510 S--SFTAKSLVHLMKLRIGGCKLMT----EIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCT-FKFPSLEDLFV 582 (629)
Q Consensus 510 ~--~~~l~~l~~L~~L~l~~c~~l~----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~p~L~~L~i 582 (629)
. .......+.++.+.+.++.... .++... ..+++|+.|+++++ +++.++. .. ..+++|++|++
T Consensus 239 ~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l-------~~l~~L~~L~Ls~N-~l~~i~~--~~~~~l~~L~~L~L 308 (353)
T 2z80_A 239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL-------NQISGLLELEFSRN-QLKSVPD--GIFDRLTSLQKIWL 308 (353)
T ss_dssp CC------CCCCCCEEEEESCBCCHHHHHHHHHHH-------HTCTTCCEEECCSS-CCCCCCT--TTTTTCTTCCEEEC
T ss_pred ccccccccccchhhccccccccccCcchhhhHHHH-------hcccCCCEEECCCC-CCCccCH--HHHhcCCCCCEEEe
Confidence 1 1112345566777776664222 122211 24677888888774 5666665 33 56778888888
Q ss_pred cCCC
Q 047700 583 IDCP 586 (629)
Q Consensus 583 ~~c~ 586 (629)
.+|+
T Consensus 309 ~~N~ 312 (353)
T 2z80_A 309 HTNP 312 (353)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 7775
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=1.2e-18 Score=183.88 Aligned_cols=139 Identities=26% Similarity=0.325 Sum_probs=66.2
Q ss_pred CCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccccceeeccCCCCccCchhhhcCccccEEeecCCC
Q 047700 300 SKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCW 379 (629)
Q Consensus 300 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 379 (629)
++|++|++++|.++.+| .++.+++|++|++++|.++.++.. ..+|++|++++|.++.+| .++++++|++|++++|.
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc
Confidence 35555555555555555 255555555555555554442211 124555555555544444 34444445444444441
Q ss_pred -------------------CCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcc
Q 047700 380 -------------------NLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKD 440 (629)
Q Consensus 380 -------------------~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~ 440 (629)
.+..+|. ++.+++|+.|++++|.+.. +|..+.+|+.|++++|.
T Consensus 207 l~~l~~~~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~----------------l~~~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 207 LKKLPDLPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKT----------------LPDLPPSLEALNVRDNY 268 (454)
T ss_dssp CSSCCCCCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSS----------------CCSCCTTCCEEECCSSC
T ss_pred CCcCCCCcCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCc----------------ccccccccCEEECCCCc
Confidence 3334442 4455555555555554321 33334556666666555
Q ss_pred hhhhccccCChhhhcccceeeeccCC
Q 047700 441 ITMICQDHLPKHLFQNLKSLEVVSDK 466 (629)
Q Consensus 441 ~~~~~~~~~~~~~~~~L~~L~l~~~~ 466 (629)
+..+.. .+++|+.|+++++.
T Consensus 269 l~~l~~------~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 269 LTDLPE------LPQSLTFLDVSENI 288 (454)
T ss_dssp CSCCCC------CCTTCCEEECCSSC
T ss_pred ccccCc------ccCcCCEEECcCCc
Confidence 553211 12455666665543
No 55
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=8.8e-19 Score=190.98 Aligned_cols=308 Identities=17% Similarity=0.157 Sum_probs=205.4
Q ss_pred ceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccc-hhhhcccCCcEEEcCCcCCCC--cccccCccccc
Q 047700 272 CSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLP-QSVHLLSNLQTLCLDQCVLGD--ISIIGNLEKLE 348 (629)
Q Consensus 272 l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~ 348 (629)
.++++++++.+..+|..+ .++|++|++++|.++.+| ..+..+++|++|++++|.++. |..++++++|+
T Consensus 33 ~~~l~ls~~~L~~ip~~~---------~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL---------PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp CCEEECTTSCCCSCCTTS---------CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred CcEEEcCCCCCccCCCCC---------CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 377888888888777654 467888888888887665 467888888888888888777 45677888888
Q ss_pred eeeccCCCCccCchhhhcCccccEEeecCCCCCCccCh-hhhhcCccCceEEeccccccccccCCCcccc--cc------
Q 047700 349 NLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPP-NVISKLTQLEELYMGNTFVKWEFEGKEGGAE--AS------ 419 (629)
Q Consensus 349 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~~------ 419 (629)
+|++++|.++.+|.. .+++|++|++++| .+..++. ..++++++|++|++++|.+....... ...+ ..
T Consensus 104 ~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~L~L~~L~L~~n 179 (562)
T 3a79_B 104 YLDVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP-VAHLHLSCILLDLV 179 (562)
T ss_dssp EEECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGG-GTTSCEEEEEEEES
T ss_pred EEECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccccCchhh-hhhceeeEEEeecc
Confidence 888888888887776 7888888888887 4555431 23788888888888887654311000 0000 00
Q ss_pred c---ccccCcc-----------------------------c---------------------------------------
Q 047700 420 A---TFVFPKV-----------------------------I--------------------------------------- 428 (629)
Q Consensus 420 ~---~~~~p~~-----------------------------l--------------------------------------- 428 (629)
. ....|.. +
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 0 0000000 0
Q ss_pred ----------------cCcceEEccCcchh-hhcccc----------------------CC-------------------
Q 047700 429 ----------------SNLEELKLGGKDIT-MICQDH----------------------LP------------------- 450 (629)
Q Consensus 429 ----------------~~L~~L~L~~~~~~-~~~~~~----------------------~~------------------- 450 (629)
.+|+.|++++|.+. .++... +|
T Consensus 260 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence 13444444444333 111000 00
Q ss_pred ---------hhhhcccceeeeccCCCCceeeccccccCchhhhh---------------hccccCceeeeEEEecCCCCc
Q 047700 451 ---------KHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLE---------------LRQFIQRDIFKWRVSYCKRLK 506 (629)
Q Consensus 451 ---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~---------------~~~~~~L~~~~L~l~~c~~l~ 506 (629)
...+++|++|++.++......+..+..+++|+.|. ...+++|+. |+++++. ++
T Consensus 340 ~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~--L~l~~N~-l~ 416 (562)
T 3a79_B 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET--LDVSLNS-LN 416 (562)
T ss_dssp SSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE--EECTTSC-CB
T ss_pred CCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCE--EECCCCc-CC
Confidence 03456788888887765554455556666666665 346789999 9999965 44
Q ss_pred c-ccchHHHhcccCcceEEEecccccceecccccccccccccc-ccccccccccccccceeccCCCeeecCCCceeeecC
Q 047700 507 N-LVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVF-SRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVID 584 (629)
Q Consensus 507 ~-l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~ 584 (629)
. ++. ..+..+++|+.|++++|......+. .+ ++|+.|+++++ +++.+|. ....+++|+.|++++
T Consensus 417 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~----------~l~~~L~~L~L~~N-~l~~ip~--~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 417 SHAYD-RTCAWAESILVLNLSSNMLTGSVFR----------CLPPKVKVLDLHNN-RIMSIPK--DVTHLQALQELNVAS 482 (562)
T ss_dssp SCCSS-CCCCCCTTCCEEECCSSCCCGGGGS----------SCCTTCSEEECCSS-CCCCCCT--TTTSSCCCSEEECCS
T ss_pred CccCh-hhhcCcccCCEEECCCCCCCcchhh----------hhcCcCCEEECCCC-cCcccCh--hhcCCCCCCEEECCC
Confidence 4 543 3467889999999999985443332 24 69999999996 7888887 566999999999998
Q ss_pred CCCccccCCC-CCCchhhHHhhhccCCC
Q 047700 585 CPKVMIFSCG-VSSTPRLREVRKNWGLD 611 (629)
Q Consensus 585 c~~L~~lp~~-~~~l~~L~~l~~~~~~~ 611 (629)
|. +..+|.+ +..+++|+.+. ..+++
T Consensus 483 N~-l~~l~~~~~~~l~~L~~L~-l~~N~ 508 (562)
T 3a79_B 483 NQ-LKSVPDGVFDRLTSLQYIW-LHDNP 508 (562)
T ss_dssp SC-CCCCCTTSTTTCTTCCCEE-CCSCC
T ss_pred CC-CCCCCHHHHhcCCCCCEEE-ecCCC
Confidence 85 7789987 88999999988 55544
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=3.7e-19 Score=178.25 Aligned_cols=169 Identities=25% Similarity=0.286 Sum_probs=117.0
Q ss_pred eEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchh-hhcccCCcEEEcCCcCCCC----cccccCcccc
Q 047700 273 SAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQS-VHLLSNLQTLCLDQCVLGD----ISIIGNLEKL 347 (629)
Q Consensus 273 ~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~----~~~i~~l~~L 347 (629)
+.+...++.+..+|..+ .++|++|++++|.++.+|.. +..+++|++|++++|.+.. +..+..+++|
T Consensus 10 ~~l~c~~~~l~~ip~~~---------~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 80 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI---------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80 (306)
T ss_dssp TEEECCSSCCSSCCSCC---------CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred CEEEcCCCCcccCCCCC---------CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence 35677777788888754 56888888888888888764 6788888888888888775 3456678888
Q ss_pred ceeeccCCCCccCchhhhcCccccEEeecCCCCCCccCh-hhhhcCccCceEEeccccccccccCCCcccccccccccCc
Q 047700 348 ENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPP-NVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPK 426 (629)
Q Consensus 348 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~ 426 (629)
++|++++|.++.+|..+..+++|++|++++| .+..++. ..+..+++|+.|++++|.+....+. ...
T Consensus 81 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~ 147 (306)
T 2z66_A 81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG------------IFN 147 (306)
T ss_dssp CEEECCSCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTT------------TTT
T ss_pred CEEECCCCccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchh------------hcc
Confidence 8888888888888888888888888888887 4455543 3477888888888888876432211 112
Q ss_pred cccCcceEEccCcchhh-hccccCChhhhcccceeeeccC
Q 047700 427 VISNLEELKLGGKDITM-ICQDHLPKHLFQNLKSLEVVSD 465 (629)
Q Consensus 427 ~l~~L~~L~L~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~ 465 (629)
.+++|+.|++++|.+.. ..... ...+++|++|+++++
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~--~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDI--FTELRNLTFLDLSQC 185 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSC--CTTCTTCCEEECTTS
T ss_pred cCcCCCEEECCCCccccccchhH--HhhCcCCCEEECCCC
Confidence 34667777777776653 11111 123445555555554
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=7.7e-19 Score=185.28 Aligned_cols=223 Identities=20% Similarity=0.225 Sum_probs=112.4
Q ss_pred cccceEEeccCCCCCCCCCC-CCCCCcchhccCCccEEEecCCcccccc-hhhhcccCCcEEEcCCcCCCC-c-ccccCc
Q 047700 269 LKNCSAVSLNDIEIGVLPKG-LEYPQLEFFWMSKLRGLALSKMQLLSLP-QSVHLLSNLQTLCLDQCVLGD-I-SIIGNL 344 (629)
Q Consensus 269 ~~~l~~L~l~~~~~~~lp~~-~~~~~l~~l~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~-~-~~i~~l 344 (629)
.++++.|++++|.+..++.. +.. +++|++|+|++|.+..++ ..+..+++|++|++++|.++. + ..+..+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~-------l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 135 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKH-------LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL 135 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSS-------CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSC
T ss_pred CCCCcEEEccCCcCCeeCHHHhhC-------CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcc
Confidence 34555566665555554421 221 555666666666555443 345555666666666665555 2 235556
Q ss_pred cccceeeccCCCCccCch-hhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccc
Q 047700 345 EKLENLSLVDSDIEWLPN-EIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFV 423 (629)
Q Consensus 345 ~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 423 (629)
++|++|++++|.++.+|. .+.++++|++|++++|..++.++...+.++++|+.|++++|.+... +
T Consensus 136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~------------- 201 (440)
T 3zyj_A 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P------------- 201 (440)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-------------
T ss_pred ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-------------
Confidence 666666666665555543 3455566666666655555555554455566666666665554320 0
Q ss_pred cCccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCC
Q 047700 424 FPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCK 503 (629)
Q Consensus 424 ~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~ 503 (629)
-...+.+|+.|+|++|.++.+....+ ..+++|++|.+.++......+.. +..+++|+. |+|+++
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~-----------~~~l~~L~~--L~L~~N- 265 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSF--QGLMHLQKLWMIQSQIQVIERNA-----------FDNLQSLVE--INLAHN- 265 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTCCCCEECTTS-----------STTCTTCCE--EECTTS-
T ss_pred ccCCCcccCEEECCCCccCccChhhh--ccCccCCEEECCCCceeEEChhh-----------hcCCCCCCE--EECCCC-
Confidence 00123455555565555554322222 23445555555554332222211 233455555 555552
Q ss_pred CCccccchHHHhcccCcceEEEeccc
Q 047700 504 RLKNLVSSFTAKSLVHLMKLRIGGCK 529 (629)
Q Consensus 504 ~l~~l~~~~~l~~l~~L~~L~l~~c~ 529 (629)
.++.+++ ..+..+++|+.|++.+|+
T Consensus 266 ~l~~~~~-~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 266 NLTLLPH-DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCCCCT-TTTSSCTTCCEEECCSSC
T ss_pred CCCccCh-hHhccccCCCEEEcCCCC
Confidence 4444432 334555666666665554
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=1.7e-18 Score=182.68 Aligned_cols=290 Identities=16% Similarity=0.149 Sum_probs=181.3
Q ss_pred EEEeCCeeeccccccccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCC
Q 047700 253 ITVRNDVLVGWLNNDVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQ 332 (629)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~ 332 (629)
...++..+...+. .+++++.|++++|.+..+|.. +++|++|++++|.++.+|.. .++|++|++++
T Consensus 76 L~l~~~~l~~lp~--~~~~L~~L~l~~n~l~~lp~~----------~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~ 140 (454)
T 1jl5_A 76 LELNNLGLSSLPE--LPPHLESLVASCNSLTELPEL----------PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSN 140 (454)
T ss_dssp EECTTSCCSCCCS--CCTTCSEEECCSSCCSSCCCC----------CTTCCEEECCSSCCSCCCSC---CTTCCEEECCS
T ss_pred EEecCCccccCCC--CcCCCCEEEccCCcCCccccc----------cCCCcEEECCCCccCcccCC---CCCCCEEECcC
Confidence 3344444444333 357899999999999888853 57899999999999887753 26899999999
Q ss_pred cCCCCcccccCccccceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCC
Q 047700 333 CVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGK 412 (629)
Q Consensus 333 ~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~ 412 (629)
|.++.++.++++++|++|++++|+++.+|..+ .+|++|++++| .+..+|. ++++++|+.|++++|.+..
T Consensus 141 n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~----- 209 (454)
T 1jl5_A 141 NQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKK----- 209 (454)
T ss_dssp SCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSS-----
T ss_pred CCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCc-----
Confidence 99999668999999999999999999988654 58999999998 6777884 8999999999999998653
Q ss_pred CcccccccccccCccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccc-----------------
Q 047700 413 EGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSL----------------- 475 (629)
Q Consensus 413 ~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------- 475 (629)
+|....+|+.|++++|.+..++. ...+++|++|++.++.... .+..+
T Consensus 210 -----------l~~~~~~L~~L~l~~n~l~~lp~----~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~ 273 (454)
T 1jl5_A 210 -----------LPDLPLSLESIVAGNNILEELPE----LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLP 273 (454)
T ss_dssp -----------CCCCCTTCCEEECCSSCCSSCCC----CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCC
T ss_pred -----------CCCCcCcccEEECcCCcCCcccc----cCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccC
Confidence 23333455555555555543321 1234445555554432221 11100
Q ss_pred cccCchhhhhh---------ccccCceeeeEEEecCCCCccccchHHHhcc-cCcceEEEecccccceeccccccccccc
Q 047700 476 QRFHNMEKLEL---------RQFIQRDIFKWRVSYCKRLKNLVSSFTAKSL-VHLMKLRIGGCKLMTEIISSEEDVEEDE 545 (629)
Q Consensus 476 ~~~~~L~~L~~---------~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 545 (629)
..+++|+.|.+ ...++|+. |+++++ .++.++ .+ ++|+.|++++|. +..++.
T Consensus 274 ~~~~~L~~L~ls~N~l~~l~~~~~~L~~--L~l~~N-~l~~i~------~~~~~L~~L~Ls~N~-l~~lp~--------- 334 (454)
T 1jl5_A 274 ELPQSLTFLDVSENIFSGLSELPPNLYY--LNASSN-EIRSLC------DLPPSLEELNVSNNK-LIELPA--------- 334 (454)
T ss_dssp CCCTTCCEEECCSSCCSEESCCCTTCCE--EECCSS-CCSEEC------CCCTTCCEEECCSSC-CSCCCC---------
T ss_pred cccCcCCEEECcCCccCcccCcCCcCCE--EECcCC-cCCccc------CCcCcCCEEECCCCc-cccccc---------
Confidence 01122332220 11134444 444442 222221 12 366666666655 333332
Q ss_pred cccccccccccccccccceeccCCCeeecCCCceeeecCCCCcc--ccCCCCCCc-------------hhhHHhhhccCC
Q 047700 546 VVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKVM--IFSCGVSST-------------PRLREVRKNWGL 610 (629)
Q Consensus 546 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~--~lp~~~~~l-------------~~L~~l~~~~~~ 610 (629)
.+++|+.|+++++ .++.+|. .+++|+.|++++|+-.. .+|.++..+ ++|+.|+ ..++
T Consensus 335 -~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~-ls~N 406 (454)
T 1jl5_A 335 -LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLH-VETN 406 (454)
T ss_dssp -CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred -cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEE-CCCC
Confidence 3688888888875 5666554 57899999998887544 577777777 7888888 4444
Q ss_pred C
Q 047700 611 D 611 (629)
Q Consensus 611 ~ 611 (629)
+
T Consensus 407 ~ 407 (454)
T 1jl5_A 407 P 407 (454)
T ss_dssp -
T ss_pred c
Confidence 3
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=5.9e-19 Score=180.54 Aligned_cols=267 Identities=18% Similarity=0.160 Sum_probs=195.7
Q ss_pred eCCeeeccccccccccceEEeccCCCCCCCCC-CCCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEcCCc
Q 047700 256 RNDVLVGWLNNDVLKNCSAVSLNDIEIGVLPK-GLEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQC 333 (629)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~lp~-~~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~ 333 (629)
++..+...+. ...++++.|+++++.+..+|. .+.. +++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 39 ~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~-------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 39 SSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQR-------CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp CSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTT-------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCcccccc-cccccCcEEECCCCcCcccCHHHhcc-------CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 3334444443 345689999999999988876 3333 89999999999999977 456999999999999999
Q ss_pred CCCC-ccc-ccCccccceeeccCCCCccCch--hhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccc
Q 047700 334 VLGD-ISI-IGNLEKLENLSLVDSDIEWLPN--EIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEF 409 (629)
Q Consensus 334 ~l~~-~~~-i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~ 409 (629)
.++. ++. ++++++|++|++++|.++.+|. .++++++|++|++++|..++.++...++++++|++|++++|.+....
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 9998 443 8899999999999999999987 68899999999999987778887666899999999999999876432
Q ss_pred cCCCcccccccccccCccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccc
Q 047700 410 EGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQF 489 (629)
Q Consensus 410 ~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~ 489 (629)
+. ....+++|+.|++++|.+..+.... ...+++|+.|+++++.........+.. ....
T Consensus 191 ~~------------~l~~l~~L~~L~l~~n~l~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~l~~--------~~~~ 248 (353)
T 2z80_A 191 PK------------SLKSIQNVSHLILHMKQHILLLEIF--VDVTSSVECLELRDTDLDTFHFSELST--------GETN 248 (353)
T ss_dssp TT------------TTTTCSEEEEEEEECSCSTTHHHHH--HHHTTTEEEEEEESCBCTTCCCC--------------CC
T ss_pred HH------------HHhccccCCeecCCCCccccchhhh--hhhcccccEEECCCCcccccccccccc--------cccc
Confidence 21 1123578899999999887554321 234689999999988655433222211 2234
Q ss_pred cCceeeeEEEecCCCCcccc---chHHHhcccCcceEEEecccccceecccccccccccccccccccccccccccc
Q 047700 490 IQRDIFKWRVSYCKRLKNLV---SSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESL 562 (629)
Q Consensus 490 ~~L~~~~L~l~~c~~l~~l~---~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 562 (629)
+.++. ++++++. +.+-. ....+..+++|+.|++++|. +..++..... .+++|+.|++++++-.
T Consensus 249 ~~l~~--l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~------~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 249 SLIKK--FTFRNVK-ITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFD------RLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCCCE--EEEESCB-CCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTT------TCTTCCEEECCSSCBC
T ss_pred chhhc--ccccccc-ccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHh------cCCCCCEEEeeCCCcc
Confidence 56677 7777643 22210 01346789999999999987 5566654311 5899999999987533
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=3.5e-18 Score=180.94 Aligned_cols=233 Identities=21% Similarity=0.194 Sum_probs=186.1
Q ss_pred CeeeccccccccccceEEeccCCCCCCCCC-CCCCCCcchhccCCccEEEecCCcccccc-hhhhcccCCcEEEcCCcCC
Q 047700 258 DVLVGWLNNDVLKNCSAVSLNDIEIGVLPK-GLEYPQLEFFWMSKLRGLALSKMQLLSLP-QSVHLLSNLQTLCLDQCVL 335 (629)
Q Consensus 258 ~~~~~~~~~~~~~~l~~L~l~~~~~~~lp~-~~~~~~l~~l~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l 335 (629)
..+...+. ...++++.|++++|.+..++. .+.. +++|++|++++|.+..++ ..+..+++|++|++++|.+
T Consensus 64 ~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~-------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 64 RGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRH-------LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTT-------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCccCC-CCCCCccEEECcCCcCceECHHHcCC-------CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 33443332 456789999999999988754 3333 899999999999999765 6789999999999999999
Q ss_pred CC-c-ccccCccccceeeccCCCCccCch-hhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCC
Q 047700 336 GD-I-SIIGNLEKLENLSLVDSDIEWLPN-EIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGK 412 (629)
Q Consensus 336 ~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~ 412 (629)
.. + ..+..+++|++|++++|.++.+|. .+.++++|+.|++++|..++.++...+.++++|+.|++++|.+... +
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-- 212 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-- 212 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C--
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c--
Confidence 88 3 458899999999999999998876 6789999999999998899999987799999999999999987531 1
Q ss_pred CcccccccccccCccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCc
Q 047700 413 EGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQR 492 (629)
Q Consensus 413 ~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L 492 (629)
-...+.+|+.|++++|.+..+....+ ..+++|+.|.+.++......+.. +..+++|
T Consensus 213 -----------~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~-----------~~~l~~L 268 (452)
T 3zyi_A 213 -----------NLTPLVGLEELEMSGNHFPEIRPGSF--HGLSSLKKLWVMNSQVSLIERNA-----------FDGLASL 268 (452)
T ss_dssp -----------CCTTCTTCCEEECTTSCCSEECGGGG--TTCTTCCEEECTTSCCCEECTTT-----------TTTCTTC
T ss_pred -----------cccccccccEEECcCCcCcccCcccc--cCccCCCEEEeCCCcCceECHHH-----------hcCCCCC
Confidence 11235789999999999986643333 45778999999987654433333 3567889
Q ss_pred eeeeEEEecCCCCccccchHHHhcccCcceEEEeccc
Q 047700 493 DIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCK 529 (629)
Q Consensus 493 ~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~ 529 (629)
+. |+|+++ .++.+++ ..+..+++|+.|++.+|+
T Consensus 269 ~~--L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 269 VE--LNLAHN-NLSSLPH-DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CE--EECCSS-CCSCCCT-TSSTTCTTCCEEECCSSC
T ss_pred CE--EECCCC-cCCccCh-HHhccccCCCEEEccCCC
Confidence 99 999995 6677654 456789999999999987
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=4.6e-18 Score=179.35 Aligned_cols=243 Identities=19% Similarity=0.219 Sum_probs=193.2
Q ss_pred cceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccc-hhhhcccCCcEEEcCCcCCCC--cccccCcccc
Q 047700 271 NCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLP-QSVHLLSNLQTLCLDQCVLGD--ISIIGNLEKL 347 (629)
Q Consensus 271 ~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L 347 (629)
..+.++..+..+..+|..+ .+++++|+|++|.++.++ ..+..+++|++|++++|.+.. +..+.++++|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~---------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L 114 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI---------STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC---------CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSC
T ss_pred CCCEEEeCCCCcCcCCCCC---------CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccC
Confidence 3567888888899999866 678999999999999765 679999999999999999988 4679999999
Q ss_pred ceeeccCCCCccCch-hhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCc
Q 047700 348 ENLSLVDSDIEWLPN-EIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPK 426 (629)
Q Consensus 348 ~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~ 426 (629)
++|++++|+++.+|. .+..+++|++|++++| .+..++...+.++++|+.|++++|......+. ....
T Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-----------~~~~ 182 (440)
T 3zyj_A 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISE-----------GAFE 182 (440)
T ss_dssp CEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECT-----------TTTT
T ss_pred CEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCc-----------chhh
Confidence 999999999999886 5889999999999998 67788877799999999999998654332221 0123
Q ss_pred cccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCc
Q 047700 427 VISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLK 506 (629)
Q Consensus 427 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~ 506 (629)
.+.+|+.|++++|.++.+.. ...+++|++|+++++......+.. +..+++|+. |+++++ .++
T Consensus 183 ~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~-----------~~~l~~L~~--L~L~~n-~l~ 244 (440)
T 3zyj_A 183 GLSNLRYLNLAMCNLREIPN----LTPLIKLDELDLSGNHLSAIRPGS-----------FQGLMHLQK--LWMIQS-QIQ 244 (440)
T ss_dssp TCSSCCEEECTTSCCSSCCC----CTTCSSCCEEECTTSCCCEECTTT-----------TTTCTTCCE--EECTTC-CCC
T ss_pred cccccCeecCCCCcCccccc----cCCCcccCEEECCCCccCccChhh-----------hccCccCCE--EECCCC-cee
Confidence 46889999999999986542 356789999999988554433333 456678899 999984 566
Q ss_pred cccchHHHhcccCcceEEEecccccceecccccccccccccccccccccccccc
Q 047700 507 NLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLE 560 (629)
Q Consensus 507 ~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (629)
.+++ ..+.++++|+.|+|++|. +..++..... .+++|+.|+|.+++
T Consensus 245 ~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~------~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 245 VIER-NAFDNLQSLVEINLAHNN-LTLLPHDLFT------PLHHLERIHLHHNP 290 (440)
T ss_dssp EECT-TSSTTCTTCCEEECTTSC-CCCCCTTTTS------SCTTCCEEECCSSC
T ss_pred EECh-hhhcCCCCCCEEECCCCC-CCccChhHhc------cccCCCEEEcCCCC
Confidence 6644 457889999999999997 5555543322 58999999998754
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=6.3e-19 Score=177.33 Aligned_cols=101 Identities=19% Similarity=0.221 Sum_probs=70.5
Q ss_pred cCCccEEEecCCcccccc-hhhhcccCCcEEEcCCcCCCCcccccCccccceeeccCCCCccCchhhhcCccccEEeecC
Q 047700 299 MSKLRGLALSKMQLLSLP-QSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSS 377 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 377 (629)
+++|++|++++|.++.++ ..+..+++|++|++++|.+.....+..+++|++|++++|.++.+| ..++|++|++++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~ 108 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPSIETLHAAN 108 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----ECTTCCEEECCS
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CCCCcCEEECCC
Confidence 567788888888777654 567777888888888887776444777788888888887777665 236777777777
Q ss_pred CCCCCccChhhhhcCccCceEEeccccccc
Q 047700 378 CWNLKVIPPNVISKLTQLEELYMGNTFVKW 407 (629)
Q Consensus 378 ~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~ 407 (629)
| .+..++. ..+++|+.|++++|.+..
T Consensus 109 n-~l~~~~~---~~~~~L~~L~l~~N~l~~ 134 (317)
T 3o53_A 109 N-NISRVSC---SRGQGKKNIYLANNKITM 134 (317)
T ss_dssp S-CCSEEEE---CCCSSCEEEECCSSCCCS
T ss_pred C-ccCCcCc---cccCCCCEEECCCCCCCC
Confidence 6 4555443 236667777777776543
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=3.4e-19 Score=179.33 Aligned_cols=266 Identities=15% Similarity=0.104 Sum_probs=195.2
Q ss_pred cccceEEeccCCCCCCCCC-CCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCcccc
Q 047700 269 LKNCSAVSLNDIEIGVLPK-GLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKL 347 (629)
Q Consensus 269 ~~~l~~L~l~~~~~~~lp~-~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L 347 (629)
.++++.|++++|.+..+++ .+.. +++|++|++++|.++..++ +..+++|++|++++|.++.++ ..++|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~-------l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L 101 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAP-------FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSI 101 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTT-------CTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTC
T ss_pred CCCCCEEECcCCccCcCCHHHhhC-------CCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCc
Confidence 4589999999999988774 3333 8999999999999987765 899999999999999887633 34899
Q ss_pred ceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCcc
Q 047700 348 ENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKV 427 (629)
Q Consensus 348 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~ 427 (629)
++|++++|.++.++.. .+++|++|++++| .+..++...++.+++|+.|++++|.+....+. .+...
T Consensus 102 ~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----------~~~~~ 167 (317)
T 3o53_A 102 ETLHAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-----------ELAAS 167 (317)
T ss_dssp CEEECCSSCCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG-----------GGGGG
T ss_pred CEEECCCCccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHH-----------HHhhc
Confidence 9999999999988753 4789999999998 66666655588999999999999987643221 13334
Q ss_pred ccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCcc
Q 047700 428 ISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKN 507 (629)
Q Consensus 428 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~ 507 (629)
+.+|+.|++++|.++.+... ..+++|++|+++++..... +.. ...+++|+. |+++++ .++.
T Consensus 168 l~~L~~L~L~~N~l~~~~~~----~~l~~L~~L~Ls~N~l~~l-~~~-----------~~~l~~L~~--L~L~~N-~l~~ 228 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDLSSNKLAFM-GPE-----------FQSAAGVTW--ISLRNN-KLVL 228 (317)
T ss_dssp TTTCCEEECTTSCCCEEECC----CCCTTCCEEECCSSCCCEE-CGG-----------GGGGTTCSE--EECTTS-CCCE
T ss_pred cCcCCEEECCCCcCcccccc----cccccCCEEECCCCcCCcc-hhh-----------hcccCcccE--EECcCC-cccc
Confidence 68899999999998866322 2367899999988754432 221 345678888 998885 5666
Q ss_pred ccchHHHhcccCcceEEEeccccc-ceeccccccccccccccccccccccccccccceeccCCCeeecCCCceeeecCCC
Q 047700 508 LVSSFTAKSLVHLMKLRIGGCKLM-TEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCP 586 (629)
Q Consensus 508 l~~~~~l~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~ 586 (629)
++. .+..+++|+.|++++|+.. ..++.... .+++|+.|.+.+++.++.... .....+.+....-..|.
T Consensus 229 l~~--~~~~l~~L~~L~l~~N~~~~~~~~~~~~-------~~~~L~~l~l~~~~~l~~~~~--~~~~~~~~~~~~~~cc~ 297 (317)
T 3o53_A 229 IEK--ALRFSQNLEHFDLRGNGFHCGTLRDFFS-------KNQRVQTVAKQTVKKLTGQNE--EECTVPTLGHYGAYCCE 297 (317)
T ss_dssp ECT--TCCCCTTCCEEECTTCCCBHHHHHHHHH-------TCHHHHHHHHHHHHHHHSSSS--CCCSSTTCEEETTEEEB
T ss_pred hhh--HhhcCCCCCEEEccCCCccCcCHHHHHh-------ccccceEEECCCchhccCCch--hccCCCceecccceeec
Confidence 653 3677899999999988855 33333332 588888888888777765544 33334444444444555
Q ss_pred Ccc
Q 047700 587 KVM 589 (629)
Q Consensus 587 ~L~ 589 (629)
.+.
T Consensus 298 ~l~ 300 (317)
T 3o53_A 298 DLP 300 (317)
T ss_dssp CCT
T ss_pred cCC
Confidence 544
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=7.1e-18 Score=168.86 Aligned_cols=235 Identities=18% Similarity=0.175 Sum_probs=168.7
Q ss_pred CCeeeccccccccccceEEeccCCCCCCCCCCC-CCCCcchhccCCccEEEecCCccccc---chhhhcccCCcEEEcCC
Q 047700 257 NDVLVGWLNNDVLKNCSAVSLNDIEIGVLPKGL-EYPQLEFFWMSKLRGLALSKMQLLSL---PQSVHLLSNLQTLCLDQ 332 (629)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~lp~~~-~~~~l~~l~~~~L~~L~l~~~~~~~l---p~~l~~l~~L~~L~l~~ 332 (629)
+..++..+. ...++++.|++.++.+..+|... .. +++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 16 ~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~-------l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 16 SKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDK-------LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp SSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTT-------CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhc-------cccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 333444333 34578999999999999988753 33 89999999999999855 67788899999999999
Q ss_pred cCCCC-cccccCccccceeeccCCCCccCch--hhhcCccccEEeecCCCCCCccChhhhhcCccCceEEecccccccc-
Q 047700 333 CVLGD-ISIIGNLEKLENLSLVDSDIEWLPN--EIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWE- 408 (629)
Q Consensus 333 ~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~- 408 (629)
|.+.. ++.+..+++|++|++++|.++.++. .+..+++|++|++++| .+...+...+..+++|+.|++++|.+...
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCcccccc
Confidence 99988 6679999999999999999998874 7889999999999998 45555444588999999999999987541
Q ss_pred ccCCCcccccccccccCccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhcc
Q 047700 409 FEGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQ 488 (629)
Q Consensus 409 ~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~ 488 (629)
.+. ....+++|+.|++++|.+.......+ ..+++|++|.+.++......... ...
T Consensus 167 ~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-----------~~~ 221 (306)
T 2z66_A 167 LPD------------IFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFP-----------YKC 221 (306)
T ss_dssp ECS------------CCTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTSCCSBCCSGG-----------GTT
T ss_pred chh------------HHhhCcCCCEEECCCCCcCCcCHHHh--cCCCCCCEEECCCCccCccChhh-----------ccC
Confidence 111 22345889999999999885533222 34567777777766433322111 234
Q ss_pred ccCceeeeEEEecCCCCccccchHHHhccc-CcceEEEeccc
Q 047700 489 FIQRDIFKWRVSYCKRLKNLVSSFTAKSLV-HLMKLRIGGCK 529 (629)
Q Consensus 489 ~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~-~L~~L~l~~c~ 529 (629)
+++|+. |+++++ .++...+ ..+..+| +|+.|++++|+
T Consensus 222 l~~L~~--L~L~~N-~l~~~~~-~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 222 LNSLQV--LDYSLN-HIMTSKK-QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTCCE--EECTTS-CCCBCSS-SSCCCCCTTCCEEECTTCC
T ss_pred cccCCE--eECCCC-CCcccCH-HHHHhhhccCCEEEccCCC
Confidence 566666 777664 3333222 2244453 67777776665
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=2.1e-17 Score=183.08 Aligned_cols=339 Identities=19% Similarity=0.162 Sum_probs=213.0
Q ss_pred EEEEeCCeeeccccc--cccccceEEeccCCCCCCCCCC-CCCCCcchhccCCccEEEecCCcccccch-hhhcccCCcE
Q 047700 252 VITVRNDVLVGWLNN--DVLKNCSAVSLNDIEIGVLPKG-LEYPQLEFFWMSKLRGLALSKMQLLSLPQ-SVHLLSNLQT 327 (629)
Q Consensus 252 ~~~~~~~~~~~~~~~--~~~~~l~~L~l~~~~~~~lp~~-~~~~~l~~l~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~ 327 (629)
....+.+.++..+.. ..+++++.|++++|.+..+|+. +.. +++|++|+|++|+++.+|. .|.++.+|++
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~-------L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-------LSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-------CTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC-------CCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 344555555555432 4578999999999999988764 333 8999999999999998875 5899999999
Q ss_pred EEcCCcCCCCc--ccccCccccceeeccCCCCcc--CchhhhcCccccEEeecCCCCCCccChhhhhcCccCc----eEE
Q 047700 328 LCLDQCVLGDI--SIIGNLEKLENLSLVDSDIEW--LPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLE----ELY 399 (629)
Q Consensus 328 L~l~~~~l~~~--~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~----~L~ 399 (629)
|++++|.++.+ ..++++++|++|++++|.++. +|..++.+++|++|++++| .+..++...+..+.+++ .++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCCEEE
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccccchhhhhhhhhhhh
Confidence 99999999983 358999999999999999874 5788899999999999998 55555443344433322 233
Q ss_pred eccccccccccCC--------------------------------------------------Cccc-------------
Q 047700 400 MGNTFVKWEFEGK--------------------------------------------------EGGA------------- 416 (629)
Q Consensus 400 l~~~~~~~~~~~~--------------------------------------------------~~~~------------- 416 (629)
++.+.+....++. ....
T Consensus 208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence 3322211000000 0000
Q ss_pred ------------------------------------------ccc------cccccC-----------------------
Q 047700 417 ------------------------------------------EAS------ATFVFP----------------------- 425 (629)
Q Consensus 417 ------------------------------------------~~~------~~~~~p----------------------- 425 (629)
+.. .+..++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp EECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 000 000000
Q ss_pred ccccCcceEEccCcchhhhccc-----------------------cCChhhhcccceeeeccCCCCcee-eccccccCch
Q 047700 426 KVISNLEELKLGGKDITMICQD-----------------------HLPKHLFQNLKSLEVVSDKSDNFS-IGSLQRFHNM 481 (629)
Q Consensus 426 ~~l~~L~~L~L~~~~~~~~~~~-----------------------~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L 481 (629)
..+++|+.|+++.|.+...... ......+++|+.+.+..+...... ...+..+.++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 0123344444444433211000 001123456666666654332221 1222333444
Q ss_pred hhhh-------------hccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceecccccccccccccc
Q 047700 482 EKLE-------------LRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVF 548 (629)
Q Consensus 482 ~~L~-------------~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 548 (629)
+.+. ...+++|+. |+++++.......+ ..+..+++|+.|++++|. +..++..... .+
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~--L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~------~l 517 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEV--LKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQ-LEQLSPTAFN------SL 517 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCE--EECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECTTTTT------TC
T ss_pred ccccccccccccccccccccchhhhh--hhhhhcccccccCc-hhhhhccccCEEECCCCc-cCCcChHHHc------CC
Confidence 4333 456788999 99998766655433 346789999999999997 5555433222 58
Q ss_pred ccccccccccccccceeccCCCeeecCCCceeeecCCCCccccCCCCCCc-hhhHHhhhccCCC
Q 047700 549 SRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKVMIFSCGVSST-PRLREVRKNWGLD 611 (629)
Q Consensus 549 ~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l-~~L~~l~~~~~~~ 611 (629)
++|+.|+|+++ +++.++.. ....+++|+.|+++++.-....|..+.++ ++|+.|. ..++|
T Consensus 518 ~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~-L~~Np 578 (635)
T 4g8a_A 518 SSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN-LTQND 578 (635)
T ss_dssp TTCCEEECTTS-CCCBCCCG-GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE-CTTCC
T ss_pred CCCCEEECCCC-cCCCCChh-HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE-eeCCC
Confidence 99999999985 66666441 34668999999999986544445567777 5788888 54444
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=6.4e-18 Score=179.98 Aligned_cols=234 Identities=16% Similarity=0.125 Sum_probs=139.5
Q ss_pred cCCccEEEecCCcccccc-hhhhcccCCcEEEcCCcCCCCcccccCccccceeeccCCCCccCchhhhcCccccEEeecC
Q 047700 299 MSKLRGLALSKMQLLSLP-QSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSS 377 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 377 (629)
+++|++|+|++|.++.++ ..++.+++|++|++++|.+..+..++.+++|++|++++|.++.+|. .++|++|++++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~ 108 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN 108 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence 557888888888887664 5678888888888888888764347888888888888888776663 37788888888
Q ss_pred CCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchhhhccccCChhhhccc
Q 047700 378 CWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQNL 457 (629)
Q Consensus 378 ~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L 457 (629)
| .+..++. ..+++|+.|++++|.+....+. ....+++|+.|++++|.++...
T Consensus 109 N-~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~------------ 160 (487)
T 3oja_A 109 N-NISRVSC---SRGQGKKNIYLANNKITMLRDL------------DEGCRSRVQYLDLKLNEIDTVN------------ 160 (487)
T ss_dssp S-CCCCEEE---CCCSSCEEEECCSSCCCSGGGB------------CGGGGSSEEEEECTTSCCCEEE------------
T ss_pred C-cCCCCCc---cccCCCCEEECCCCCCCCCCch------------hhcCCCCCCEEECCCCCCCCcC------------
Confidence 7 4455443 2456777777777765432111 1122345555555555554322
Q ss_pred ceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceeccc
Q 047700 458 KSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISS 537 (629)
Q Consensus 458 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 537 (629)
+..+ ...+++|+. |+++++ .++.+++ ...+++|+.|++++|. +..++..
T Consensus 161 --------------~~~l----------~~~l~~L~~--L~Ls~N-~l~~~~~---~~~l~~L~~L~Ls~N~-l~~~~~~ 209 (487)
T 3oja_A 161 --------------FAEL----------AASSDTLEH--LNLQYN-FIYDVKG---QVVFAKLKTLDLSSNK-LAFMGPE 209 (487)
T ss_dssp --------------GGGG----------GGGTTTCCE--EECTTS-CCCEEEC---CCCCTTCCEEECCSSC-CCEECGG
T ss_pred --------------hHHH----------hhhCCcccE--EecCCC-ccccccc---cccCCCCCEEECCCCC-CCCCCHh
Confidence 1111 113345555 555553 2333322 2245666666666655 3344333
Q ss_pred cccccccccccccccccccccccccceeccCCCeeecCCCceeeecCCCCc-cccCCCCCCchhhHHhh
Q 047700 538 EEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPKV-MIFSCGVSSTPRLREVR 605 (629)
Q Consensus 538 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~L-~~lp~~~~~l~~L~~l~ 605 (629)
.. .+++|+.|++++ ..+..+|. ....+++|+.|++.+|+-. ..+|..+..++.|+.+.
T Consensus 210 ~~-------~l~~L~~L~Ls~-N~l~~lp~--~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~ 268 (487)
T 3oja_A 210 FQ-------SAAGVTWISLRN-NKLVLIEK--ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (487)
T ss_dssp GG-------GGTTCSEEECTT-SCCCEECT--TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHH
T ss_pred Hc-------CCCCccEEEecC-CcCcccch--hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEe
Confidence 22 366666666666 34555555 4556677777777766644 34455566666666665
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=4e-17 Score=161.55 Aligned_cols=216 Identities=17% Similarity=0.184 Sum_probs=166.9
Q ss_pred eCCeeeccccccccccceEEeccCCCCCCCCCC-CCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEcCCc
Q 047700 256 RNDVLVGWLNNDVLKNCSAVSLNDIEIGVLPKG-LEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQC 333 (629)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~lp~~-~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~ 333 (629)
.+..+...+. ..+++++.|+++++.+..++.. +.. +++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 19 ~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~-------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 19 PQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRA-------CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTT-------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHccc-------CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 3334444333 4567999999999999888753 333 89999999999999976 678999999999999999
Q ss_pred C-CCC--cccccCccccceeeccCCCCccC-chhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccc
Q 047700 334 V-LGD--ISIIGNLEKLENLSLVDSDIEWL-PNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEF 409 (629)
Q Consensus 334 ~-l~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~ 409 (629)
. +.. +..+..+++|++|++++|.++.+ |..+.++++|++|++++| .+..++...++++++|+.|++++|.+....
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccC
Confidence 7 777 46789999999999999999977 566889999999999998 667777766899999999999999875422
Q ss_pred cCCCcccccccccccCccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccc
Q 047700 410 EGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQF 489 (629)
Q Consensus 410 ~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~ 489 (629)
+. ....+.+|+.|++++|.+.......+ ..+++|+.|++.++......+.. ...+
T Consensus 170 ~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-----------~~~l 224 (285)
T 1ozn_A 170 ER------------AFRGLHSLDRLLLHQNRVAHVHPHAF--RDLGRLMTLYLFANNLSALPTEA-----------LAPL 224 (285)
T ss_dssp TT------------TTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCSCCCHHH-----------HTTC
T ss_pred HH------------HhcCccccCEEECCCCcccccCHhHc--cCcccccEeeCCCCcCCcCCHHH-----------cccC
Confidence 11 12236889999999999886543322 45789999999987544422222 3567
Q ss_pred cCceeeeEEEecCCCCcc
Q 047700 490 IQRDIFKWRVSYCKRLKN 507 (629)
Q Consensus 490 ~~L~~~~L~l~~c~~l~~ 507 (629)
++|+. |++++++-..+
T Consensus 225 ~~L~~--L~l~~N~~~c~ 240 (285)
T 1ozn_A 225 RALQY--LRLNDNPWVCD 240 (285)
T ss_dssp TTCCE--EECCSSCEECS
T ss_pred cccCE--EeccCCCccCC
Confidence 88999 99998654443
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=5.5e-18 Score=180.50 Aligned_cols=241 Identities=15% Similarity=0.102 Sum_probs=181.8
Q ss_pred cccceEEeccCCCCCCCCC-CCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCcccc
Q 047700 269 LKNCSAVSLNDIEIGVLPK-GLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKL 347 (629)
Q Consensus 269 ~~~l~~L~l~~~~~~~lp~-~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L 347 (629)
.++++.|++++|.+..+++ .+.. +++|++|+|++|.++..++ +..+++|++|++++|.++.++ ..++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~-------l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L 101 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAP-------FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSI 101 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTT-------CTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhC-------CCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCc
Confidence 4589999999999988764 3433 8999999999999987665 899999999999999887743 23899
Q ss_pred ceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCcc
Q 047700 348 ENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKV 427 (629)
Q Consensus 348 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~ 427 (629)
++|++++|.++.+|.. .+++|+.|++++| .+..+++..++.+++|+.|++++|.+....+. .+...
T Consensus 102 ~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----------~l~~~ 167 (487)
T 3oja_A 102 ETLHAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-----------ELAAS 167 (487)
T ss_dssp CEEECCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG-----------GGGGG
T ss_pred CEEECcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCcChH-----------HHhhh
Confidence 9999999999988763 5789999999998 55555444489999999999999987653321 13334
Q ss_pred ccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCcc
Q 047700 428 ISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKN 507 (629)
Q Consensus 428 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~ 507 (629)
+++|+.|+|++|.++.+.. ...+++|+.|+++++.... .+.. +..+++|+. |++++ +.++.
T Consensus 168 l~~L~~L~Ls~N~l~~~~~----~~~l~~L~~L~Ls~N~l~~-~~~~-----------~~~l~~L~~--L~Ls~-N~l~~ 228 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSSNKLAF-MGPE-----------FQSAAGVTW--ISLRN-NKLVL 228 (487)
T ss_dssp TTTCCEEECTTSCCCEEEC----CCCCTTCCEEECCSSCCCE-ECGG-----------GGGGTTCSE--EECTT-SCCCE
T ss_pred CCcccEEecCCCccccccc----cccCCCCCEEECCCCCCCC-CCHh-----------HcCCCCccE--EEecC-CcCcc
Confidence 6899999999999986632 2347889999998875443 2221 345678888 99988 45666
Q ss_pred ccchHHHhcccCcceEEEeccccc-ceecccccccccccccccccccccccccccc
Q 047700 508 LVSSFTAKSLVHLMKLRIGGCKLM-TEIISSEEDVEEDEVVFSRLKWLSLECLESL 562 (629)
Q Consensus 508 l~~~~~l~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 562 (629)
+|. .+..+++|+.|++++|+.. ..++.... .+++|+.|.+..+..+
T Consensus 229 lp~--~l~~l~~L~~L~l~~N~l~c~~~~~~~~-------~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 229 IEK--ALRFSQNLEHFDLRGNGFHCGTLRDFFS-------KNQRVQTVAKQTVKKL 275 (487)
T ss_dssp ECT--TCCCCTTCCEEECTTCCBCHHHHHHHHT-------TCHHHHHHHHHHHHHH
T ss_pred cch--hhccCCCCCEEEcCCCCCcCcchHHHHH-------hCCCCcEEeccccccc
Confidence 653 3677899999999998855 23333222 4778888877644433
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=1.7e-18 Score=173.83 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=114.3
Q ss_pred cccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCccc--ccchhhh-------cccCCcEEEcCCcCCCC--
Q 047700 269 LKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLL--SLPQSVH-------LLSNLQTLCLDQCVLGD-- 337 (629)
Q Consensus 269 ~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~--~lp~~l~-------~l~~L~~L~l~~~~l~~-- 337 (629)
.++++.+.+.++.+ .+|..+ ...|++|++++|.+. .+|..+. .+++|++|++++|.+..
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~---------~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 111 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQF---------TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA 111 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHH---------HHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred CCCceeEeeccccc-ccHHHH---------HHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchh
Confidence 34677788888888 777644 334888888888885 4666665 68999999999999885
Q ss_pred cccc--cCccccceeeccCCCCccCchhhhcC-----ccccEEeecCCCCCCccChhhhhcCccCceEEecccccccccc
Q 047700 338 ISII--GNLEKLENLSLVDSDIEWLPNEIGEL-----TQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFE 410 (629)
Q Consensus 338 ~~~i--~~l~~L~~L~l~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~ 410 (629)
|..+ +.+++|++|++++|+++.+|..++.+ ++|++|++++| .+..++...++++++|++|++++|.+....+
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 112 PPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp CCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence 5555 88999999999999999888888777 89999999998 5666665558899999999999997543211
Q ss_pred CCCcccccccccccCccccCcceEEccCcchh
Q 047700 411 GKEGGAEASATFVFPKVISNLEELKLGGKDIT 442 (629)
Q Consensus 411 ~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~ 442 (629)
.. ....+..+++|+.|++++|.++
T Consensus 191 ~~--------~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 191 LI--------SALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp HH--------HHSCTTSCTTCCEEECTTSCCC
T ss_pred HH--------HHHHhccCCCCCEEECCCCcCc
Confidence 00 0001234567777777777766
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=3.2e-16 Score=154.21 Aligned_cols=216 Identities=21% Similarity=0.237 Sum_probs=139.6
Q ss_pred EEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccch-hhhcccCCcEEEcCCcCCCC--cccccCcccccee
Q 047700 274 AVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQ-SVHLLSNLQTLCLDQCVLGD--ISIIGNLEKLENL 350 (629)
Q Consensus 274 ~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L 350 (629)
.+...+..+..+|..+ .++|++|++++|.++.++. .+..+++|++|++++|.+.. +..++++++|++|
T Consensus 11 ~~~c~~~~l~~ip~~l---------~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL---------PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81 (276)
T ss_dssp EEECTTSCCSSCCSSS---------CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred eEEecCCCccccCCCC---------CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEE
Confidence 3445556667777654 4578888888888886654 67788888888888888877 2357788888888
Q ss_pred eccCCCCccCc-hhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccc-cCCCcccccccccccCccc
Q 047700 351 SLVDSDIEWLP-NEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEF-EGKEGGAEASATFVFPKVI 428 (629)
Q Consensus 351 ~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~p~~l 428 (629)
++++|.++.++ ..+.++++|++|++++| .+..++...++++++|++|++++|.+.... +. ....+
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~------------~~~~l 148 (276)
T 2z62_A 82 ILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPE------------YFSNL 148 (276)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG------------GGGGC
T ss_pred ECCCCccCccChhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCccceecCch------------hhccC
Confidence 88888888665 45778888888888887 555555544778888888888888764310 10 11224
Q ss_pred cCcceEEccCcchhhhccccCChhhhcccc----eeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCC
Q 047700 429 SNLEELKLGGKDITMICQDHLPKHLFQNLK----SLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKR 504 (629)
Q Consensus 429 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~ 504 (629)
.+|+.|++++|.++.+....+ ..+++|+ +|+++++......+. .....+|+. |+++++ .
T Consensus 149 ~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~l~l~L~ls~n~l~~~~~~------------~~~~~~L~~--L~L~~n-~ 211 (276)
T 2z62_A 149 TNLEHLDLSSNKIQSIYCTDL--RVLHQMPLLNLSLDLSLNPMNFIQPG------------AFKEIRLKE--LALDTN-Q 211 (276)
T ss_dssp TTCCEEECCSSCCCEECGGGG--HHHHTCTTCCEEEECCSSCCCEECTT------------SSCSCCEEE--EECCSS-C
T ss_pred CCCCEEECCCCCCCcCCHHHh--hhhhhccccceeeecCCCcccccCcc------------ccCCCcccE--EECCCC-c
Confidence 677777888777764432211 2344454 555655433222111 112236777 777774 3
Q ss_pred CccccchHHHhcccCcceEEEeccc
Q 047700 505 LKNLVSSFTAKSLVHLMKLRIGGCK 529 (629)
Q Consensus 505 l~~l~~~~~l~~l~~L~~L~l~~c~ 529 (629)
++.+++ ..++.+++|+.|++++|+
T Consensus 212 l~~~~~-~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 212 LKSVPD-GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CSCCCT-TTTTTCCSCCEEECCSSC
T ss_pred eeecCH-hHhcccccccEEEccCCc
Confidence 565543 345677788888887776
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=5.9e-16 Score=154.72 Aligned_cols=126 Identities=25% Similarity=0.397 Sum_probs=98.9
Q ss_pred ccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCcccc
Q 047700 268 VLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKL 347 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L 347 (629)
.+++++.|++.++.+..+|. +.. +++|++|++++|.+..++. +..+++|++|++++|.+..++.+..+++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~-~~~-------l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 109 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEG-VQY-------LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSI 109 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTT-GGG-------CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTC
T ss_pred HcCCcCEEEeeCCCccCchh-hhc-------cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCC
Confidence 45678888888888777763 222 7888888888888887776 78888888888888888887778888888
Q ss_pred ceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEecccccc
Q 047700 348 ENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 348 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~ 406 (629)
++|++++|.++.+|. +..+++|++|++++| .+..++. ++.+++|+.|++++|.+.
T Consensus 110 ~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 110 KTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp CEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred CEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCC
Confidence 888888888887765 778888888888887 5666665 778888888888887654
No 72
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=2.3e-16 Score=160.82 Aligned_cols=237 Identities=17% Similarity=0.147 Sum_probs=155.0
Q ss_pred eEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccch-hhhcccCCcEEEcCCcCCCC-c--ccccCccccc
Q 047700 273 SAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQ-SVHLLSNLQTLCLDQCVLGD-I--SIIGNLEKLE 348 (629)
Q Consensus 273 ~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~-~--~~i~~l~~L~ 348 (629)
+.+..++++++++|..+ .+++++|+|++|+++.+|+ .|.++++|++|+|++|.+.. + ..+.++++|+
T Consensus 12 ~~v~C~~~~Lt~iP~~l---------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp TEEEEESTTCCSCCTTC---------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred CEEEecCCCCCccCcCc---------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence 45677788889999765 5789999999999999986 58899999999999999865 3 3577888876
Q ss_pred e-eeccCCCCccCc-hhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCc
Q 047700 349 N-LSLVDSDIEWLP-NEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPK 426 (629)
Q Consensus 349 ~-L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~ 426 (629)
. +.+..|+++.+| ..+..+++|++|++++| .+..+|...+....++..|++.++......+. ..+..
T Consensus 83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~----------~~f~~ 151 (350)
T 4ay9_X 83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIER----------NSFVG 151 (350)
T ss_dssp EEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECT----------TSSTT
T ss_pred hhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccc----------cchhh
Confidence 5 556678898885 45688999999999997 66777664455666777888766532221110 01111
Q ss_pred cccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCc
Q 047700 427 VISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLK 506 (629)
Q Consensus 427 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~ 506 (629)
....++.|++++|+++.+..+.+ ...+|++|.+.++......+... ...+++|+. |++++ +.++
T Consensus 152 ~~~~l~~L~L~~N~i~~i~~~~f---~~~~L~~l~l~~~n~l~~i~~~~----------f~~l~~L~~--LdLs~-N~l~ 215 (350)
T 4ay9_X 152 LSFESVILWLNKNGIQEIHNSAF---NGTQLDELNLSDNNNLEELPNDV----------FHGASGPVI--LDISR-TRIH 215 (350)
T ss_dssp SBSSCEEEECCSSCCCEECTTSS---TTEEEEEEECTTCTTCCCCCTTT----------TTTEECCSE--EECTT-SCCC
T ss_pred cchhhhhhccccccccCCChhhc---cccchhHHhhccCCcccCCCHHH----------hccCcccch--hhcCC-CCcC
Confidence 12457778888888775543322 23456666666554444333211 234556666 66666 3555
Q ss_pred cccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccc
Q 047700 507 NLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLE 557 (629)
Q Consensus 507 ~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 557 (629)
.++. ..+.+|+.|.+.++..++.+|... .|++|+.+++.
T Consensus 216 ~lp~----~~~~~L~~L~~l~~~~l~~lP~l~--------~l~~L~~l~l~ 254 (350)
T 4ay9_X 216 SLPS----YGLENLKKLRARSTYNLKKLPTLE--------KLVALMEASLT 254 (350)
T ss_dssp CCCS----SSCTTCCEEECTTCTTCCCCCCTT--------TCCSCCEEECS
T ss_pred ccCh----hhhccchHhhhccCCCcCcCCCch--------hCcChhhCcCC
Confidence 5543 335566666666666666665432 36666666664
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=5.6e-16 Score=154.90 Aligned_cols=189 Identities=18% Similarity=0.270 Sum_probs=147.2
Q ss_pred cCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccccceeeccCCCCccCchhhhcCccccEEeecCC
Q 047700 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSC 378 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 378 (629)
+++|++|++++|.+..+| .+..+++|++|++++|.+..++.+..+++|++|++++|.++.+| .+..+++|++|++++|
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST 117 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC
Confidence 889999999999999887 58999999999999999999555999999999999999999886 5889999999999998
Q ss_pred CCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchhhhccccCChhhhcccc
Q 047700 379 WNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLK 458 (629)
Q Consensus 379 ~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~ 458 (629)
.+..++. +..+++|+.|++++|.+....+ ...+++|+.|++++|.++.+.. ...+++|+
T Consensus 118 -~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--------------l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~ 176 (308)
T 1h6u_A 118 -QITDVTP--LAGLSNLQVLYLDLNQITNISP--------------LAGLTNLQYLSIGNAQVSDLTP----LANLSKLT 176 (308)
T ss_dssp -CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--------------GGGCTTCCEEECCSSCCCCCGG----GTTCTTCC
T ss_pred -CCCCchh--hcCCCCCCEEECCCCccCcCcc--------------ccCCCCccEEEccCCcCCCChh----hcCCCCCC
Confidence 6677765 8999999999999997653211 1235788888888888875432 34567788
Q ss_pred eeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEeccc
Q 047700 459 SLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCK 529 (629)
Q Consensus 459 ~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~ 529 (629)
.|.+.++......+ ...+++|+. |++++| .++.+++ +..+++|+.|++++|+
T Consensus 177 ~L~l~~n~l~~~~~-------------l~~l~~L~~--L~L~~N-~l~~~~~---l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 177 TLKADDNKISDISP-------------LASLPNLIE--VHLKNN-QISDVSP---LANTSNLFIVTLTNQT 228 (308)
T ss_dssp EEECCSSCCCCCGG-------------GGGCTTCCE--EECTTS-CCCBCGG---GTTCTTCCEEEEEEEE
T ss_pred EEECCCCccCcChh-------------hcCCCCCCE--EEccCC-ccCcccc---ccCCCCCCEEEccCCe
Confidence 88887764332111 345677777 888774 4555432 5777888888888776
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=5.6e-16 Score=153.30 Aligned_cols=174 Identities=25% Similarity=0.314 Sum_probs=138.2
Q ss_pred ccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEcCCcCCCCcccccCccc
Q 047700 268 VLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQCVLGDISIIGNLEK 346 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~ 346 (629)
..++++.+++.++.+..+|..+ .+++++|++++|.++.+ |..+..+++|++|++++|.++.++..+.+++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~---------~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 78 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL---------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV 78 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC---------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTT
T ss_pred ccCCccEEECCCCCCCcCCCCC---------CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCc
Confidence 4567899999999999999765 57899999999999966 5679999999999999999998666689999
Q ss_pred cceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCc
Q 047700 347 LENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPK 426 (629)
Q Consensus 347 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~ 426 (629)
|++|++++|.++.+|..+..+++|++|++++| .++.+|...+.++++|+.|++++|.+....++ ...
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~ 145 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPG------------LLT 145 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT------------TTT
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChh------------hcc
Confidence 99999999999999999999999999999998 77778766689999999999999987542211 112
Q ss_pred cccCcceEEccCcchhhhccccCChhhhcccceeeeccC
Q 047700 427 VISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSD 465 (629)
Q Consensus 427 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 465 (629)
.+.+|+.|++++|.++.+..+.+ ..+++|+.|.+.++
T Consensus 146 ~l~~L~~L~L~~N~l~~l~~~~~--~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 146 PTPKLEKLSLANNNLTELPAGLL--NGLENLDTLLLQEN 182 (290)
T ss_dssp TCTTCCEEECTTSCCSCCCTTTT--TTCTTCCEEECCSS
T ss_pred cccCCCEEECCCCcCCccCHHHh--cCcCCCCEEECCCC
Confidence 35678888888887774432211 23455555555554
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=9.1e-16 Score=150.40 Aligned_cols=197 Identities=24% Similarity=0.349 Sum_probs=138.2
Q ss_pred ccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccch-hhhcccCCcEEEcCCcCCCC-cc-cccCccc
Q 047700 270 KNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQ-SVHLLSNLQTLCLDQCVLGD-IS-IIGNLEK 346 (629)
Q Consensus 270 ~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~-~~-~i~~l~~ 346 (629)
...+.++++++.+..+|..+ .+++++|++++|.++.+|. .+..+++|++|++++|.+.. ++ .+..+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~---------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~ 86 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNI---------PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCC---------CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTT
T ss_pred CCCCEEEccCCCCCccCCCC---------CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCC
Confidence 35678889988888888754 5678999999999987764 68889999999999998888 33 3578999
Q ss_pred cceeeccCCCCccCchh-hhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccC
Q 047700 347 LENLSLVDSDIEWLPNE-IGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFP 425 (629)
Q Consensus 347 L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p 425 (629)
|++|++++|.++.+|.. +..+++|++|++++| .+..++...++.+++|++|++++|.+....++ ..
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------~~ 153 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG------------VF 153 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TT
T ss_pred CCEEECCCCcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccCHh------------Hc
Confidence 99999999999888754 578899999999987 66667666578888999999888876431110 11
Q ss_pred ccccCcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCC
Q 047700 426 KVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRL 505 (629)
Q Consensus 426 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l 505 (629)
..+++|+.|++++|.+..+.... +..+++|+. |+++++ .+
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~~~-------------------------------------~~~l~~L~~--L~L~~N-~l 193 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPEGA-------------------------------------FDKLTELKT--LKLDNN-QL 193 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTT-------------------------------------TTTCTTCCE--EECCSS-CC
T ss_pred cCCcccceeEecCCcCcEeChhH-------------------------------------hccCCCcCE--EECCCC-cC
Confidence 12355666666665554221110 223455666 666663 44
Q ss_pred ccccchHHHhcccCcceEEEeccc
Q 047700 506 KNLVSSFTAKSLVHLMKLRIGGCK 529 (629)
Q Consensus 506 ~~l~~~~~l~~l~~L~~L~l~~c~ 529 (629)
+.+++ ..+..+++|+.|++.+|+
T Consensus 194 ~~~~~-~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 194 KRVPE-GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CcCCH-HHhccccCCCEEEecCCC
Confidence 55433 345667777777777766
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=6.5e-16 Score=151.45 Aligned_cols=198 Identities=22% Similarity=0.286 Sum_probs=145.7
Q ss_pred CCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCc--ccccCccccceeeccCCCCccCchhh-hcCccccEEeec
Q 047700 300 SKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDI--SIIGNLEKLENLSLVDSDIEWLPNEI-GELTQLRLLDLS 376 (629)
Q Consensus 300 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~--~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~ 376 (629)
...++++++++.++.+|..+. .+|++|++++|.+..+ ..++++++|++|++++|.++.+|..+ .++++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 357899999999999997654 6899999999999883 46899999999999999999998765 789999999999
Q ss_pred CCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchhhhccccCChhhhcc
Q 047700 377 SCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQN 456 (629)
Q Consensus 377 ~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 456 (629)
+| .+..+|...+.++++|++|++++|.+....+. ....+++|+.|++++|.+..+.
T Consensus 94 ~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~----------- 149 (270)
T 2o6q_A 94 DN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPR------------VFDSLTKLTYLSLGYNELQSLP----------- 149 (270)
T ss_dssp SS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCC-----------
T ss_pred CC-cCCcCCHhHcccccCCCEEECCCCccCeeCHH------------HhCcCcCCCEEECCCCcCCccC-----------
Confidence 98 67777776678899999999998876532110 1112345555555555444211
Q ss_pred cceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceecc
Q 047700 457 LKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIIS 536 (629)
Q Consensus 457 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 536 (629)
... +..+++|+. |+++++ .++.+++ ..+.++++|+.|++++|. +..++.
T Consensus 150 ---------------~~~-----------~~~l~~L~~--L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~ 198 (270)
T 2o6q_A 150 ---------------KGV-----------FDKLTSLKE--LRLYNN-QLKRVPE-GAFDKLTELKTLKLDNNQ-LKRVPE 198 (270)
T ss_dssp ---------------TTT-----------TTTCTTCCE--EECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred ---------------HhH-----------ccCCcccce--eEecCC-cCcEeCh-hHhccCCCcCEEECCCCc-CCcCCH
Confidence 111 234567788 888874 5555543 446789999999999996 555554
Q ss_pred cccccccccccccccccccccccc
Q 047700 537 SEEDVEEDEVVFSRLKWLSLECLE 560 (629)
Q Consensus 537 ~~~~~~~~~~~~~~L~~L~l~~~~ 560 (629)
.... .+++|+.|++.+++
T Consensus 199 ~~~~------~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 199 GAFD------SLEKLKMLQLQENP 216 (270)
T ss_dssp TTTT------TCTTCCEEECCSSC
T ss_pred HHhc------cccCCCEEEecCCC
Confidence 3222 58999999998865
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=5.5e-16 Score=152.10 Aligned_cols=105 Identities=28% Similarity=0.413 Sum_probs=54.8
Q ss_pred cCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccccceeeccCCCCccCchh-hhcCccccEEeecC
Q 047700 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNE-IGELTQLRLLDLSS 377 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~ 377 (629)
+++|+.|++++|.+..++. +..+++|++|++++|.+..++.++.+++|++|++++|.++.+|.. ++++++|++|++++
T Consensus 40 l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp HTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred ccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 4555555555555554442 455555555555555555554555555555555555555544433 34555555555555
Q ss_pred CCCCCccChhhhhcCccCceEEeccccc
Q 047700 378 CWNLKVIPPNVISKLTQLEELYMGNTFV 405 (629)
Q Consensus 378 ~~~l~~~p~~~i~~l~~L~~L~l~~~~~ 405 (629)
| .+..++...++.+++|+.|++++|.+
T Consensus 119 n-~l~~~~~~~~~~l~~L~~L~L~~n~l 145 (272)
T 3rfs_A 119 N-QLQSLPDGVFDKLTNLTYLNLAHNQL 145 (272)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred C-cCCccCHHHhccCCCCCEEECCCCcc
Confidence 4 33444443345555555555555543
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=1.1e-16 Score=162.60 Aligned_cols=129 Identities=17% Similarity=0.167 Sum_probs=88.0
Q ss_pred ccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC---cccccCccc
Q 047700 270 KNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD---ISIIGNLEK 346 (629)
Q Consensus 270 ~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~---~~~i~~l~~ 346 (629)
...+++++.++.+. +.. +..+..+++++|++++|.+...+..+..+++|++|++++|.+.. +..+..+++
T Consensus 47 ~~~~~l~l~~~~~~--~~~-----~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDV-----TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp TTSSEEECTTCBCC--HHH-----HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred hhheeeccccccCC--HHH-----HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 34677777776544 111 11111377888888888877665556678888888888887664 345777888
Q ss_pred cceeeccCCCCc-cCchhhhcCccccEEeecCCCCCCc--cChhhhhcCccCceEEeccc-ccc
Q 047700 347 LENLSLVDSDIE-WLPNEIGELTQLRLLDLSSCWNLKV--IPPNVISKLTQLEELYMGNT-FVK 406 (629)
Q Consensus 347 L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~--~p~~~i~~l~~L~~L~l~~~-~~~ 406 (629)
|++|++++|.++ ..|..++++++|++|++++|..++. ++.. +.++++|++|++++| .+.
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcC
Confidence 888888888776 5666777788888888888755553 3433 677788888888777 543
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=8.2e-16 Score=147.80 Aligned_cols=204 Identities=18% Similarity=0.196 Sum_probs=130.6
Q ss_pred CCCCCCCCCCCCcchhccCCccEEEecCCcccccch-hhhcccCCcEEEcCCcC-CCC-c-ccccCccccceeeccC-CC
Q 047700 282 IGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQ-SVHLLSNLQTLCLDQCV-LGD-I-SIIGNLEKLENLSLVD-SD 356 (629)
Q Consensus 282 ~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~-l~~-~-~~i~~l~~L~~L~l~~-~~ 356 (629)
+..+|. + .++|++|++++|.++.+|. .+..+++|++|++++|. ++. + ..++.+++|++|++++ |.
T Consensus 23 l~~ip~-~---------~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 23 IQRIPS-L---------PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92 (239)
T ss_dssp CSSCCC-C---------CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT
T ss_pred ccccCC-C---------CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC
Confidence 667776 3 5688899999999887765 67888899999999886 776 3 3678888899999988 88
Q ss_pred CccCch-hhhcCccccEEeecCCCCCCccChhhhhcCccCc---eEEeccc-cccccccCCCcccccccccccCccccCc
Q 047700 357 IEWLPN-EIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLE---ELYMGNT-FVKWEFEGKEGGAEASATFVFPKVISNL 431 (629)
Q Consensus 357 l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~p~~l~~L 431 (629)
++.+|. .+.++++|++|++++| .+..+|. ++.+++|+ .|++++| .+....+. ....+.+|
T Consensus 93 l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~------------~~~~l~~L 157 (239)
T 2xwt_C 93 LTYIDPDALKELPLLKFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVN------------AFQGLCNE 157 (239)
T ss_dssp CCEECTTSEECCTTCCEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTT------------TTTTTBSS
T ss_pred eeEcCHHHhCCCCCCCEEeCCCC-CCccccc--cccccccccccEEECCCCcchhhcCcc------------cccchhcc
Confidence 887764 5678888899988887 5666775 67777777 8888887 54321110 01123455
Q ss_pred c-eEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCccccc
Q 047700 432 E-ELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNLVS 510 (629)
Q Consensus 432 ~-~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~~ 510 (629)
+ .|++++|.++.+....+ .. ++|+. |++++++.++.+++
T Consensus 158 ~~~L~l~~n~l~~i~~~~~-------------------------------------~~-~~L~~--L~L~~n~~l~~i~~ 197 (239)
T 2xwt_C 158 TLTLKLYNNGFTSVQGYAF-------------------------------------NG-TKLDA--VYLNKNKYLTVIDK 197 (239)
T ss_dssp EEEEECCSCCCCEECTTTT-------------------------------------TT-CEEEE--EECTTCTTCCEECT
T ss_pred eeEEEcCCCCCcccCHhhc-------------------------------------CC-CCCCE--EEcCCCCCcccCCH
Confidence 5 55555555542221111 11 35555 66665444555433
Q ss_pred hHHHhcc-cCcceEEEecccccceeccccccccccccccccccccccccccc
Q 047700 511 SFTAKSL-VHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLES 561 (629)
Q Consensus 511 ~~~l~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 561 (629)
..+.++ ++|+.|++++|+ +..++.. .|++|+.|.+.++..
T Consensus 198 -~~~~~l~~~L~~L~l~~N~-l~~l~~~---------~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 198 -DAFGGVYSGPSLLDVSQTS-VTALPSK---------GLEHLKELIARNTWT 238 (239)
T ss_dssp -TTTTTCSBCCSEEECTTCC-CCCCCCT---------TCTTCSEEECTTC--
T ss_pred -HHhhccccCCcEEECCCCc-cccCChh---------HhccCceeeccCccC
Confidence 334556 677777776655 4444432 366777777666543
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=2e-18 Score=183.48 Aligned_cols=315 Identities=20% Similarity=0.157 Sum_probs=153.1
Q ss_pred ccccceEEeccCCCCC-----CCCCCCCCCCcchhccCCccEEEecCCcccc-cchhh-hccc----CCcEEEcCCcCCC
Q 047700 268 VLKNCSAVSLNDIEIG-----VLPKGLEYPQLEFFWMSKLRGLALSKMQLLS-LPQSV-HLLS----NLQTLCLDQCVLG 336 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~-----~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~-lp~~l-~~l~----~L~~L~l~~~~l~ 336 (629)
..++++.|++.+|.+. .++..+.. +++|++|++++|.+.. .+..+ ..+. +|++|++++|.+.
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~-------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRV-------NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHT-------CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHh-------CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCC
Confidence 3456666666666654 22222211 5667777777766652 12222 2233 4777777777666
Q ss_pred C------cccccCccccceeeccCCCCccC-chhhh-----cCccccEEeecCCCCCCccC----hhhhhcCccCceEEe
Q 047700 337 D------ISIIGNLEKLENLSLVDSDIEWL-PNEIG-----ELTQLRLLDLSSCWNLKVIP----PNVISKLTQLEELYM 400 (629)
Q Consensus 337 ~------~~~i~~l~~L~~L~l~~~~l~~l-p~~i~-----~l~~L~~L~l~~~~~l~~~p----~~~i~~l~~L~~L~l 400 (629)
. +..+..+++|++|++++|.++.. +..+. ..++|++|++++| .++... ...+..+++|++|++
T Consensus 99 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L 177 (461)
T 1z7x_W 99 GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTV 177 (461)
T ss_dssp GGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEEC
Confidence 3 34566667777777777665521 22221 2446777777766 333321 122455667777777
Q ss_pred ccccccccccCCCcccccccccccCc----cccCcceEEccCcchhhhccccCC--hhhhcccceeeeccCCCCceeecc
Q 047700 401 GNTFVKWEFEGKEGGAEASATFVFPK----VISNLEELKLGGKDITMICQDHLP--KHLFQNLKSLEVVSDKSDNFSIGS 474 (629)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~p~----~l~~L~~L~L~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~ 474 (629)
++|.+..... ..++. ...+|+.|++++|.+.......++ ...+++|++|+++++.........
T Consensus 178 ~~n~i~~~~~-----------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 246 (461)
T 1z7x_W 178 SNNDINEAGV-----------RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 246 (461)
T ss_dssp CSSBCHHHHH-----------HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred cCCCcchHHH-----------HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence 7665432110 01111 123677777777766542110111 124567777777766422211100
Q ss_pred -----ccccCchhhhh-----------------hccccCceeeeEEEecCCCCccccchHHHh-----cccCcceEEEec
Q 047700 475 -----LQRFHNMEKLE-----------------LRQFIQRDIFKWRVSYCKRLKNLVSSFTAK-----SLVHLMKLRIGG 527 (629)
Q Consensus 475 -----~~~~~~L~~L~-----------------~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~-----~l~~L~~L~l~~ 527 (629)
...+++|+.|. +..+++|+. |+++++ .+++... ..+. ..++|+.|++++
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~--L~Ls~n-~i~~~~~-~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE--LSLAGN-ELGDEGA-RLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCE--EECTTC-CCHHHHH-HHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcce--EECCCC-CCchHHH-HHHHHHhccCCccceeeEcCC
Confidence 01223333332 122445555 555553 2222111 1111 114555555555
Q ss_pred ccccceeccccccccccccccccccccccccccccceeccCCCee-----ecCCCceeeecCCCCcc----ccCCCCCCc
Q 047700 528 CKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTF-----KFPSLEDLFVIDCPKVM----IFSCGVSST 598 (629)
Q Consensus 528 c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-----~~p~L~~L~i~~c~~L~----~lp~~~~~l 598 (629)
|.......... +.....+++|+.|+++++ .+.+.... ... ..++|++|++++|.--. .+|..+..+
T Consensus 323 n~l~~~~~~~l---~~~l~~~~~L~~L~Ls~n-~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 397 (461)
T 1z7x_W 323 CSFTAACCSHF---SSVLAQNRFLLELQISNN-RLEDAGVR-ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397 (461)
T ss_dssp SCCBGGGHHHH---HHHHHHCSSCCEEECCSS-BCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHH---HHHHhhCCCccEEEccCC-ccccccHH-HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence 54221100000 011123577777777775 34332110 011 15688888888885322 566666777
Q ss_pred hhhHHhhhccCCC
Q 047700 599 PRLREVRKNWGLD 611 (629)
Q Consensus 599 ~~L~~l~~~~~~~ 611 (629)
++|++|+ ..+++
T Consensus 398 ~~L~~L~-l~~N~ 409 (461)
T 1z7x_W 398 HSLRELD-LSNNC 409 (461)
T ss_dssp CCCCEEE-CCSSS
T ss_pred CCccEEE-CCCCC
Confidence 8888887 55544
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=6.8e-16 Score=148.41 Aligned_cols=174 Identities=17% Similarity=0.229 Sum_probs=135.1
Q ss_pred ccccceEEeccCCCCCCCCCC-CCCCCcchhccCCccEEEecCCc-ccccch-hhhcccCCcEEEcCC-cCCCC-c-ccc
Q 047700 268 VLKNCSAVSLNDIEIGVLPKG-LEYPQLEFFWMSKLRGLALSKMQ-LLSLPQ-SVHLLSNLQTLCLDQ-CVLGD-I-SII 341 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~~lp~~-~~~~~l~~l~~~~L~~L~l~~~~-~~~lp~-~l~~l~~L~~L~l~~-~~l~~-~-~~i 341 (629)
....++.|++.++.+..+|.. +.. +++|++|++++|. ++.+|. .+..+++|++|++++ |.++. + ..+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~-------l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSN-------LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTT-------CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CCCcccEEEEeCCcceEECHHHccC-------CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 556899999999999988863 333 8999999999997 888875 688999999999999 88888 3 468
Q ss_pred cCccccceeeccCCCCccCchhhhcCcccc---EEeecCCCCCCccChhhhhcCccCc-eEEeccccccccccCCCcccc
Q 047700 342 GNLEKLENLSLVDSDIEWLPNEIGELTQLR---LLDLSSCWNLKVIPPNVISKLTQLE-ELYMGNTFVKWEFEGKEGGAE 417 (629)
Q Consensus 342 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~---~L~l~~~~~l~~~p~~~i~~l~~L~-~L~l~~~~~~~~~~~~~~~~~ 417 (629)
..+++|++|++++|.++.+|. ++.+++|+ +|++++|..++.+|...+.++++|+ .|++++|.+.. .+..
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~----- 174 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGY----- 174 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTT-----
T ss_pred CCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHh-----
Confidence 899999999999999999997 88888888 9999998778888887789999999 99999998753 1110
Q ss_pred cccccccCccccCcceEEccCcc-hhhhccccCChhhh-cccceeeecc
Q 047700 418 ASATFVFPKVISNLEELKLGGKD-ITMICQDHLPKHLF-QNLKSLEVVS 464 (629)
Q Consensus 418 ~~~~~~~p~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~-~~L~~L~l~~ 464 (629)
.+ . ..+|+.|++++|. ++.+....+ ..+ ++|+.|++++
T Consensus 175 -----~~-~-~~~L~~L~L~~n~~l~~i~~~~~--~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 175 -----AF-N-GTKLDAVYLNKNKYLTVIDKDAF--GGVYSGPSLLDVSQ 214 (239)
T ss_dssp -----TT-T-TCEEEEEECTTCTTCCEECTTTT--TTCSBCCSEEECTT
T ss_pred -----hc-C-CCCCCEEEcCCCCCcccCCHHHh--hccccCCcEEECCC
Confidence 01 1 1578888888884 764432211 223 4455555544
No 82
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=3.5e-17 Score=173.93 Aligned_cols=292 Identities=20% Similarity=0.155 Sum_probs=191.2
Q ss_pred cccceEEeccCCCCCCCCC-CC-CCCCcchhccC----CccEEEecCCccc-----ccchhhhcccCCcEEEcCCcCCCC
Q 047700 269 LKNCSAVSLNDIEIGVLPK-GL-EYPQLEFFWMS----KLRGLALSKMQLL-----SLPQSVHLLSNLQTLCLDQCVLGD 337 (629)
Q Consensus 269 ~~~l~~L~l~~~~~~~lp~-~~-~~~~l~~l~~~----~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~l~~~~l~~ 337 (629)
.++++.|++++|.+..... .+ .. ++ +|++|++++|.+. .+|..+..+++|++|++++|.+..
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~-------l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQG-------LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHT-------TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHH-------HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 4789999999988743211 00 00 23 7999999999987 457788999999999999999875
Q ss_pred --ccccc-----CccccceeeccCCCCcc-----CchhhhcCccccEEeecCCCCCCccChhhhh-----cCccCceEEe
Q 047700 338 --ISIIG-----NLEKLENLSLVDSDIEW-----LPNEIGELTQLRLLDLSSCWNLKVIPPNVIS-----KLTQLEELYM 400 (629)
Q Consensus 338 --~~~i~-----~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~-----~l~~L~~L~l 400 (629)
+..+. ..++|++|++++|+++. ++..+..+++|++|++++|. ++......+. ..++|++|++
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEc
Confidence 33322 35679999999998874 46667788999999999984 4433222232 3568999999
Q ss_pred ccccccccccCCCcccccccccccCc---cccCcceEEccCcchhhhccccCCh---hhhcccceeeeccCCCCce----
Q 047700 401 GNTFVKWEFEGKEGGAEASATFVFPK---VISNLEELKLGGKDITMICQDHLPK---HLFQNLKSLEVVSDKSDNF---- 470 (629)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~p~---~l~~L~~L~L~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~---- 470 (629)
++|.+..... ..++. .+++|+.|++++|.+.+.....+.. ..+++|++|++.+|.....
T Consensus 207 ~~n~l~~~~~-----------~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 275 (461)
T 1z7x_W 207 ESCGVTSDNC-----------RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD 275 (461)
T ss_dssp TTSCCBTTHH-----------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred cCCCCcHHHH-----------HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHH
Confidence 9987653210 01222 3477888888888776532111111 1356788888887744332
Q ss_pred eeccccccCchhhhh------------------hccccCceeeeEEEecCCCCcccc---chHHHhcccCcceEEEeccc
Q 047700 471 SIGSLQRFHNMEKLE------------------LRQFIQRDIFKWRVSYCKRLKNLV---SSFTAKSLVHLMKLRIGGCK 529 (629)
Q Consensus 471 ~~~~~~~~~~L~~L~------------------~~~~~~L~~~~L~l~~c~~l~~l~---~~~~l~~l~~L~~L~l~~c~ 529 (629)
.+..+..+++|+.|. ....++|+. |++++|. ++... ....+..+++|++|++++|.
T Consensus 276 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~--L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 276 LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES--LWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE--EECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee--eEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc
Confidence 233344456666665 112369999 9999975 44321 12345678999999999996
Q ss_pred ccceeccccccccccccccccccccccccccccc-----eeccCCCeeecCCCceeeecCCCC
Q 047700 530 LMTEIISSEEDVEEDEVVFSRLKWLSLECLESLT-----SFCSGNCTFKFPSLEDLFVIDCPK 587 (629)
Q Consensus 530 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~p~L~~L~i~~c~~ 587 (629)
.....+..... .-....++|+.|++++| .++ .++. ....+++|++|++++|+-
T Consensus 353 i~~~~~~~l~~--~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~--~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 353 LEDAGVRELCQ--GLGQPGSVLRVLWLADC-DVSDSSCSSLAA--TLLANHSLRELDLSNNCL 410 (461)
T ss_dssp CHHHHHHHHHH--HHTSTTCCCCEEECTTS-CCCHHHHHHHHH--HHHHCCCCCEEECCSSSC
T ss_pred cccccHHHHHH--HHcCCCCceEEEECCCC-CCChhhHHHHHH--HHHhCCCccEEECCCCCC
Confidence 33222221110 00002579999999997 454 4554 456789999999999863
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=2.4e-16 Score=160.01 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=99.1
Q ss_pred ccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccc--cchhhhcccCCcEEEcCCcCCCC--cccccCcc
Q 047700 270 KNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLS--LPQSVHLLSNLQTLCLDQCVLGD--ISIIGNLE 345 (629)
Q Consensus 270 ~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~l~~--~~~i~~l~ 345 (629)
..++.+.+.++.+...+..... +++|++|++++|.+.. +|..+..+++|++|++++|.+.. +..++.++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~-------~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~ 142 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFS-------PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCC-------CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT
T ss_pred ccceEEEcCCccccccchhhcc-------CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC
Confidence 6788888888887666554332 7889999999988762 77778888999999999988775 56788889
Q ss_pred ccceeeccCC-CCc--cCchhhhcCccccEEeecCCCCCCc--cChhhhhcCc-cCceEEecccc
Q 047700 346 KLENLSLVDS-DIE--WLPNEIGELTQLRLLDLSSCWNLKV--IPPNVISKLT-QLEELYMGNTF 404 (629)
Q Consensus 346 ~L~~L~l~~~-~l~--~lp~~i~~l~~L~~L~l~~~~~l~~--~p~~~i~~l~-~L~~L~l~~~~ 404 (629)
+|++|++++| .++ .+|..+.++++|++|++++|..++. ++.. +..++ +|++|++++|.
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCG
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCc
Confidence 9999999988 677 4777788889999999988855553 3433 67788 88888888874
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=2.6e-15 Score=148.57 Aligned_cols=196 Identities=19% Similarity=0.194 Sum_probs=151.7
Q ss_pred cCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC--cccccCccccceeeccCCCCccCchhhhcCccccEEeec
Q 047700 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD--ISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLS 376 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 376 (629)
+++++.++++++.++.+|..+. +++++|++++|.+.. +..+..+++|++|++++|.++.+|.. +.+++|++|+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 7889999999999999997664 799999999999988 46799999999999999999988875 789999999999
Q ss_pred CCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchhhhccccCChhhhcc
Q 047700 377 SCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQN 456 (629)
Q Consensus 377 ~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 456 (629)
+| .+..+|.. +..+++|+.|++++|.+....++ ....+.+|+.|++++|.++.+..+.+ ..+++
T Consensus 86 ~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~------------~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~ 149 (290)
T 1p9a_G 86 HN-QLQSLPLL-GQTLPALTVLDVSFNRLTSLPLG------------ALRGLGELQELYLKGNELKTLPPGLL--TPTPK 149 (290)
T ss_dssp SS-CCSSCCCC-TTTCTTCCEEECCSSCCCCCCSS------------TTTTCTTCCEEECTTSCCCCCCTTTT--TTCTT
T ss_pred CC-cCCcCchh-hccCCCCCEEECCCCcCcccCHH------------HHcCCCCCCEEECCCCCCCccChhhc--ccccC
Confidence 98 77888876 88999999999999987642211 12335789999999999885543322 34678
Q ss_pred cceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEeccc
Q 047700 457 LKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCK 529 (629)
Q Consensus 457 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~ 529 (629)
|+.|.+.++......... ...+++|+. |++++ +.++.++. .+..+++|+.|.+.+|+
T Consensus 150 L~~L~L~~N~l~~l~~~~-----------~~~l~~L~~--L~L~~-N~l~~ip~--~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGL-----------LNGLENLDT--LLLQE-NSLYTIPK--GFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCEEECTTSCCSCCCTTT-----------TTTCTTCCE--EECCS-SCCCCCCT--TTTTTCCCSEEECCSCC
T ss_pred CCEEECCCCcCCccCHHH-----------hcCcCCCCE--EECCC-CcCCccCh--hhcccccCCeEEeCCCC
Confidence 888888876543322111 345678888 88887 45666653 24556788888888876
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=4.2e-15 Score=146.21 Aligned_cols=199 Identities=19% Similarity=0.248 Sum_probs=153.7
Q ss_pred ccccceEEeccCCCCCCCCC-CCCCCCcchhccCCccEEEecCCcccccch-hhhcccCCcEEEcCCcCCCC--cccccC
Q 047700 268 VLKNCSAVSLNDIEIGVLPK-GLEYPQLEFFWMSKLRGLALSKMQLLSLPQ-SVHLLSNLQTLCLDQCVLGD--ISIIGN 343 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~~lp~-~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~i~~ 343 (629)
..+.++.|+++++.+..++. .+.. +++|++|++++|.+..++. .+..+++|++|++++|.+.. +..+.+
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~-------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFS-------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTT-------CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CCCCccEEECCCCcccccCHhHhcc-------ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 45689999999999988875 3333 8999999999999997764 68999999999999999988 467899
Q ss_pred ccccceeeccCCCCccCch-hhhcCccccEEeecCCCCCCc--cChhhhhcCccCceEEeccccccccccCCCccccccc
Q 047700 344 LEKLENLSLVDSDIEWLPN-EIGELTQLRLLDLSSCWNLKV--IPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASA 420 (629)
Q Consensus 344 l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 420 (629)
+++|++|++++|.++.++. .++++++|++|++++| .+.. +|.. ++++++|+.|++++|.+......
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~--------- 167 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCT--------- 167 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGG---------
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCCcCCHH---------
Confidence 9999999999999998876 6889999999999998 4554 5665 89999999999999987542211
Q ss_pred ccccCccccCcc----eEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeee
Q 047700 421 TFVFPKVISNLE----ELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFK 496 (629)
Q Consensus 421 ~~~~p~~l~~L~----~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~ 496 (629)
....+.+|+ .|++++|.+..+....+ ...+|++|++.++......... ...+++|+.
T Consensus 168 ---~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~-----------~~~l~~L~~-- 228 (276)
T 2z62_A 168 ---DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---KEIRLKELALDTNQLKSVPDGI-----------FDRLTSLQK-- 228 (276)
T ss_dssp ---GGHHHHTCTTCCEEEECCSSCCCEECTTSS---CSCCEEEEECCSSCCSCCCTTT-----------TTTCCSCCE--
T ss_pred ---HhhhhhhccccceeeecCCCcccccCcccc---CCCcccEEECCCCceeecCHhH-----------hcccccccE--
Confidence 111234455 88999999986654433 2347999999987644322211 356788899
Q ss_pred EEEecCC
Q 047700 497 WRVSYCK 503 (629)
Q Consensus 497 L~l~~c~ 503 (629)
|++++.+
T Consensus 229 L~l~~N~ 235 (276)
T 2z62_A 229 IWLHTNP 235 (276)
T ss_dssp EECCSSC
T ss_pred EEccCCc
Confidence 9998754
No 86
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=1e-16 Score=176.09 Aligned_cols=262 Identities=18% Similarity=0.122 Sum_probs=135.4
Q ss_pred cCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCC----C-cccccCccccceeeccCCCCccCchhhhcCccccEE
Q 047700 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLG----D-ISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLL 373 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~----~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 373 (629)
+++|++|++++|.+..+|..+..+++|++|+++.+... . +..+..+++|+.|+++++....+|..+..+++|++|
T Consensus 219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence 67777777777777777777777777777777653221 1 345666677777777776556677777777788888
Q ss_pred eecCCCCCCcc-ChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEcc-----------Ccch
Q 047700 374 DLSSCWNLKVI-PPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLG-----------GKDI 441 (629)
Q Consensus 374 ~l~~~~~l~~~-p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~-----------~~~~ 441 (629)
++++|. +... ....+.++++|+.|++.++..... +..+...+++|+.|+++ .+.+
T Consensus 299 ~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~------------l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 299 DLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRG------------LEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp EETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHH------------HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred ecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHH------------HHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 887774 3321 112246777777777763311110 01122233455555555 2233
Q ss_pred hhhccccCChhhhcccceeeeccCCCCce-eecccc-ccCchhhhh----------------------hccccCceeeeE
Q 047700 442 TMICQDHLPKHLFQNLKSLEVVSDKSDNF-SIGSLQ-RFHNMEKLE----------------------LRQFIQRDIFKW 497 (629)
Q Consensus 442 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~-~~~~L~~L~----------------------~~~~~~L~~~~L 497 (629)
++.....+ ...+++|++|.+.. ..... .+..+. .+++|+.|. ...+++|+. |
T Consensus 366 ~~~~~~~l-~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~--L 441 (592)
T 3ogk_B 366 SQRGLIAL-AQGCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR--F 441 (592)
T ss_dssp CHHHHHHH-HHHCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE--E
T ss_pred CHHHHHHH-HhhCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE--E
Confidence 21110000 12244555555522 11111 111110 011222111 234667777 7
Q ss_pred EEecCCC-CccccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccce--eccCCCeeec
Q 047700 498 RVSYCKR-LKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTS--FCSGNCTFKF 574 (629)
Q Consensus 498 ~l~~c~~-l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~ 574 (629)
+++.|.+ +++.........+++|+.|++++|........... ..+++|+.|+|++|+ ++. ++. ....+
T Consensus 442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~------~~~~~L~~L~l~~n~-l~~~~~~~--~~~~l 512 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS------RGCPNLQKLEMRGCC-FSERAIAA--AVTKL 512 (592)
T ss_dssp EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHH------TCCTTCCEEEEESCC-CBHHHHHH--HHHHC
T ss_pred EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHH------hcCcccCeeeccCCC-CcHHHHHH--HHHhc
Confidence 7766553 33322212223467777777776653221111111 146778888888776 432 222 23457
Q ss_pred CCCceeeecCCC
Q 047700 575 PSLEDLFVIDCP 586 (629)
Q Consensus 575 p~L~~L~i~~c~ 586 (629)
|+|++|++++|.
T Consensus 513 ~~L~~L~ls~n~ 524 (592)
T 3ogk_B 513 PSLRYLWVQGYR 524 (592)
T ss_dssp SSCCEEEEESCB
T ss_pred CccCeeECcCCc
Confidence 788888888877
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=4.5e-15 Score=145.54 Aligned_cols=155 Identities=26% Similarity=0.397 Sum_probs=125.0
Q ss_pred cccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-c-ccccCc
Q 047700 267 DVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-I-SIIGNL 344 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~i~~l 344 (629)
..++.++.|.+.++.+..++.. .. +++|++|++++|.+..++ .+..+++|++|++++|.++. + ..++.+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l-~~-------l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 108 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGI-QY-------LPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKL 108 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTG-GG-------CTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred ccccceeeeeeCCCCccccccc-cc-------CCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCC
Confidence 4567899999999998877642 22 899999999999998875 68899999999999999998 3 347899
Q ss_pred cccceeeccCCCCccCchh-hhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccc
Q 047700 345 EKLENLSLVDSDIEWLPNE-IGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFV 423 (629)
Q Consensus 345 ~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 423 (629)
++|++|++++|+++.+|.. ++++++|++|++++| .+..++...++.+++|+.|++++|.+....+.
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------ 175 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG------------ 175 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHH------------
Confidence 9999999999999988765 689999999999998 67777776678999999999999976532111
Q ss_pred cCccccCcceEEccCcchhh
Q 047700 424 FPKVISNLEELKLGGKDITM 443 (629)
Q Consensus 424 ~p~~l~~L~~L~L~~~~~~~ 443 (629)
....+.+|+.|++++|.+..
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSC
T ss_pred HhcCCccCCEEECCCCcCCc
Confidence 11234667777777776663
No 88
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.62 E-value=5.7e-17 Score=178.02 Aligned_cols=285 Identities=15% Similarity=0.096 Sum_probs=160.4
Q ss_pred cCCccEEEecCCccc-----ccchhhhcccCCcEEEcCCcCCCC-cccccCccccceeeccCCCC----ccCchhhhcCc
Q 047700 299 MSKLRGLALSKMQLL-----SLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLEKLENLSLVDSDI----EWLPNEIGELT 368 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l----~~lp~~i~~l~ 368 (629)
+++|++|++++|.++ .++..+.++++|++|++++|.+.. +..++.+++|++|+++.+.. ...+..+..++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 445555555555443 223334445555555555555444 33444555555555543211 12223344555
Q ss_pred cccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchhhhcccc
Q 047700 369 QLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDH 448 (629)
Q Consensus 369 ~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~ 448 (629)
+|+.|+++++ ....+|.. +..+++|++|++++|.+..... ..+...+++|+.|+++ +.+.+.....
T Consensus 271 ~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~~~~~-----------~~~~~~~~~L~~L~L~-~~~~~~~l~~ 336 (592)
T 3ogk_B 271 KLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLETEDH-----------CTLIQKCPNLEVLETR-NVIGDRGLEV 336 (592)
T ss_dssp TCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCCHHHH-----------HHHHTTCTTCCEEEEE-GGGHHHHHHH
T ss_pred cccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCCHHHH-----------HHHHHhCcCCCEEecc-CccCHHHHHH
Confidence 5555555553 33444543 6677888888888887432110 0122446788888887 4443221111
Q ss_pred CChhhhcccceeeecc----------CCCCcee--eccccccCchhhhh--------------hccccCceeeeEEEec-
Q 047700 449 LPKHLFQNLKSLEVVS----------DKSDNFS--IGSLQRFHNMEKLE--------------LRQFIQRDIFKWRVSY- 501 (629)
Q Consensus 449 ~~~~~~~~L~~L~l~~----------~~~~~~~--~~~~~~~~~L~~L~--------------~~~~~~L~~~~L~l~~- 501 (629)
+ ...+++|++|++.+ |...... ......+++|+.|. ...+++|+. |++++
T Consensus 337 ~-~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~--L~l~~~ 413 (592)
T 3ogk_B 337 L-AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD--FRLVLL 413 (592)
T ss_dssp H-HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCE--EEEEEC
T ss_pred H-HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcE--EEEeec
Confidence 1 23568899999995 5444422 11123466666665 223788999 88884
Q ss_pred --CCCCccccc----hHHHhcccCcceEEEecccc-cce-eccccccccccccccccccccccccccccce--eccCCCe
Q 047700 502 --CKRLKNLVS----SFTAKSLVHLMKLRIGGCKL-MTE-IISSEEDVEEDEVVFSRLKWLSLECLESLTS--FCSGNCT 571 (629)
Q Consensus 502 --c~~l~~l~~----~~~l~~l~~L~~L~l~~c~~-l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~ 571 (629)
|+.++..+. ...+.++++|+.|++++|.. +.. ...... ..+++|+.|++++|. ++. ++. ..
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~------~~~~~L~~L~L~~n~-l~~~~~~~--~~ 484 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG------QYSPNVRWMLLGYVG-ESDEGLME--FS 484 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH------HSCTTCCEEEECSCC-SSHHHHHH--HH
T ss_pred CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH------HhCccceEeeccCCC-CCHHHHHH--HH
Confidence 556665421 12356789999999987653 111 111111 147889999999865 433 222 24
Q ss_pred eecCCCceeeecCCCCccc--cCCCCCCchhhHHhhhccCCC
Q 047700 572 FKFPSLEDLFVIDCPKVMI--FSCGVSSTPRLREVRKNWGLD 611 (629)
Q Consensus 572 ~~~p~L~~L~i~~c~~L~~--lp~~~~~l~~L~~l~~~~~~~ 611 (629)
..+++|++|++++|+ +.. ++.....+++|++|. ..+|.
T Consensus 485 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~-ls~n~ 524 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLW-VQGYR 524 (592)
T ss_dssp TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEE-EESCB
T ss_pred hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeE-CcCCc
Confidence 568999999999998 432 333345678888887 66665
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=8.2e-15 Score=141.89 Aligned_cols=171 Identities=23% Similarity=0.343 Sum_probs=127.1
Q ss_pred cceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccc-hhhhcccCCcEEEcCCcCCCC--cccccCcccc
Q 047700 271 NCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLP-QSVHLLSNLQTLCLDQCVLGD--ISIIGNLEKL 347 (629)
Q Consensus 271 ~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L 347 (629)
..+.+++.++.+..+|..+ .++++.|++++|.+..++ ..+..+++|++|++++|.+.. +..+..+++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~---------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 85 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI---------PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC---------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCeEEecCCCCccccCCCC---------CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC
Confidence 4667888888888888765 568899999999988664 468889999999999998888 3457889999
Q ss_pred ceeeccCCCCccCch-hhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCc
Q 047700 348 ENLSLVDSDIEWLPN-EIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPK 426 (629)
Q Consensus 348 ~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~ 426 (629)
++|++++|+++.+|. .++.+++|++|++++| .++.+|...+..+++|+.|++++|.+....++ ...
T Consensus 86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~ 152 (251)
T 3m19_A 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG------------AFD 152 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTT
T ss_pred CEEECCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHH------------HcC
Confidence 999999999988775 4578899999999987 67777776678889999999998876532111 112
Q ss_pred cccCcceEEccCcchhhhccccCChhhhcccceeeeccC
Q 047700 427 VISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSD 465 (629)
Q Consensus 427 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 465 (629)
.+.+|+.|+|++|.+..+....+ ..+++|+.|.+.++
T Consensus 153 ~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N 189 (251)
T 3m19_A 153 KLTNLQTLSLSTNQLQSVPHGAF--DRLGKLQTITLFGN 189 (251)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSC
T ss_pred cCcCCCEEECCCCcCCccCHHHH--hCCCCCCEEEeeCC
Confidence 34677888888887774432212 23455666666554
No 90
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=4.8e-15 Score=148.49 Aligned_cols=130 Identities=17% Similarity=0.220 Sum_probs=77.7
Q ss_pred cccceEEeccCCCCC-CCCCCC--CCCCcchhccCCccEEEecCCcccccchhhhcc-----cCCcEEEcCCcCCCC--c
Q 047700 269 LKNCSAVSLNDIEIG-VLPKGL--EYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLL-----SNLQTLCLDQCVLGD--I 338 (629)
Q Consensus 269 ~~~l~~L~l~~~~~~-~lp~~~--~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l-----~~L~~L~l~~~~l~~--~ 338 (629)
++++++|++.+|.+. .+|..+ .. +++|++|++++|.++.+|..+..+ ++|++|++++|.+.. +
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~-------l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~ 166 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEAT-------GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCC-------SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred cCCccEEEccCCcccchhHHHHHHhc-------CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH
Confidence 456666777766664 345433 22 666777777777666556656655 667777777776666 2
Q ss_pred ccccCccccceeeccCCCCcc---Cchhh--hcCccccEEeecCCCCCCc---cChhhhhcCccCceEEecccccc
Q 047700 339 SIIGNLEKLENLSLVDSDIEW---LPNEI--GELTQLRLLDLSSCWNLKV---IPPNVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 339 ~~i~~l~~L~~L~l~~~~l~~---lp~~i--~~l~~L~~L~l~~~~~l~~---~p~~~i~~l~~L~~L~l~~~~~~ 406 (629)
..++++++|++|++++|++.. +|..+ +++++|++|++++| .++. ++...+.++++|+.|++++|.+.
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence 456666677777777666542 24444 56666777776666 3442 22233345566666666666554
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=9.5e-17 Score=176.35 Aligned_cols=127 Identities=20% Similarity=0.185 Sum_probs=69.5
Q ss_pred cccceEEeccCCCCCCCCCCCCCCCcchh--ccCCccEEEecCC-cccc--cchhhhcccCCcEEEcCCcCCCC--ccc-
Q 047700 269 LKNCSAVSLNDIEIGVLPKGLEYPQLEFF--WMSKLRGLALSKM-QLLS--LPQSVHLLSNLQTLCLDQCVLGD--ISI- 340 (629)
Q Consensus 269 ~~~l~~L~l~~~~~~~lp~~~~~~~l~~l--~~~~L~~L~l~~~-~~~~--lp~~l~~l~~L~~L~l~~~~l~~--~~~- 340 (629)
.+++++|++.++.+.... +..+ .+++|++|++++| .+.. ++..+..+++|++|++++|.+.. +..
T Consensus 104 ~~~L~~L~L~~~~~~~~~-------~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDC-------LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp CTTCCEEEEESCBCCHHH-------HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred CCCCCeEEeeCcEEcHHH-------HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 446777777766542211 0111 1567777777776 4442 44445567777777777776544 211
Q ss_pred ---ccCccccceeeccCCC--Cc--cCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccc
Q 047700 341 ---IGNLEKLENLSLVDSD--IE--WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNT 403 (629)
Q Consensus 341 ---i~~l~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~ 403 (629)
...+++|++|++++|. +. .++..+.++++|++|++++|..++.++.. +.++++|++|++..+
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGY 245 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBC
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccc
Confidence 2255677777777665 21 22223345677777777766444444433 556666666664433
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=1.7e-14 Score=142.76 Aligned_cols=168 Identities=25% Similarity=0.325 Sum_probs=126.7
Q ss_pred cccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccc
Q 047700 267 DVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEK 346 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~ 346 (629)
..+++++.|++.++.+..++. +.. +++|++|++++|.++.++. +..+++|++|++++|.+..++.++.+++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~-------l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~ 113 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQY-------LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKK 113 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGG-------CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTT
T ss_pred hhcCcccEEEccCCCcccChh-Hhc-------CCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCC
Confidence 346778899999888887764 222 7889999999999888876 8889999999999999888777889999
Q ss_pred cceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCc
Q 047700 347 LENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPK 426 (629)
Q Consensus 347 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~ 426 (629)
|++|++++|+++.++ .+..+++|++|++++| .+..++. ++.+++|+.|++++|.+....+ ..
T Consensus 114 L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--------------l~ 175 (291)
T 1h6t_A 114 LKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDIVP--------------LA 175 (291)
T ss_dssp CCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCCGG--------------GT
T ss_pred CCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccccchh--------------hc
Confidence 999999999888874 5788899999999987 5666643 8888999999998887653211 12
Q ss_pred cccCcceEEccCcchhhhccccCChhhhcccceeeeccC
Q 047700 427 VISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSD 465 (629)
Q Consensus 427 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 465 (629)
.+++|+.|++++|.++++.. ...+++|+.|++.++
T Consensus 176 ~l~~L~~L~L~~N~i~~l~~----l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQ 210 (291)
T ss_dssp TCTTCCEEECCSSCCCBCGG----GTTCTTCSEEEEEEE
T ss_pred CCCccCEEECCCCcCCCChh----hccCCCCCEEECcCC
Confidence 34677777777777764421 234556666666654
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=1.9e-14 Score=133.72 Aligned_cols=151 Identities=21% Similarity=0.244 Sum_probs=119.3
Q ss_pred cccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC--cccccCc
Q 047700 267 DVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD--ISIIGNL 344 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~i~~l 344 (629)
..+++++.|++.++.+..+| .+.. +++|++|++++|.++.++ .+..+++|++|++++|.+.. +..++.+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~-------l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEY-------AHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGG-------CTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred hhcCCccEEeccCCCccChH-HHhc-------CCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCC
Confidence 34678899999999888877 3333 789999999999877665 68889999999999999886 7888999
Q ss_pred cccceeeccCCCCcc-CchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccc
Q 047700 345 EKLENLSLVDSDIEW-LPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFV 423 (629)
Q Consensus 345 ~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 423 (629)
++|++|++++|.++. .|..++.+++|++|++++|..++.+|. +..+++|+.|++++|.+....
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~~-------------- 175 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYR-------------- 175 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCCT--------------
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcChH--------------
Confidence 999999999999884 677888999999999999865788774 889999999999998765311
Q ss_pred cCccccCcceEEccCcchh
Q 047700 424 FPKVISNLEELKLGGKDIT 442 (629)
Q Consensus 424 ~p~~l~~L~~L~L~~~~~~ 442 (629)
....+++|+.|++++|.+.
T Consensus 176 ~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TGGGCSSCCEEEECBC---
T ss_pred HhccCCCCCEEEeeCcccC
Confidence 1123577888888877765
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=1.4e-14 Score=147.56 Aligned_cols=239 Identities=17% Similarity=0.105 Sum_probs=174.1
Q ss_pred cEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-c-ccccCccccceeeccCCCCc-cCch-hhhcCccccEEeecCC
Q 047700 303 RGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-I-SIIGNLEKLENLSLVDSDIE-WLPN-EIGELTQLRLLDLSSC 378 (629)
Q Consensus 303 ~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~-~lp~-~i~~l~~L~~L~l~~~ 378 (629)
++++.++++++++|..+ ..++++|+|++|.++. + ..|.++++|++|+|++|++. .+|. .+.++++|+.+....+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 67889999999999876 4689999999999998 3 35899999999999999975 4664 4678999887666655
Q ss_pred CCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccC-cchhhhccccCChhhhccc
Q 047700 379 WNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGG-KDITMICQDHLPKHLFQNL 457 (629)
Q Consensus 379 ~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~-~~~~~~~~~~~~~~~~~~L 457 (629)
..+..++.+.+..+++|+.|++++|.+....+. ......++..|++.. +.+..+....+. .....+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~------------~~~~~~~l~~l~l~~~~~i~~l~~~~f~-~~~~~l 156 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV------------HKIHSLQKVLLDIQDNINIHTIERNSFV-GLSFES 156 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC------------TTCCBSSCEEEEEESCTTCCEECTTSST-TSBSSC
T ss_pred CcccccCchhhhhccccccccccccccccCCch------------hhcccchhhhhhhccccccccccccchh-hcchhh
Confidence 588888877789999999999999987542211 001124556666644 456544333221 112356
Q ss_pred ceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceeccc
Q 047700 458 KSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISS 537 (629)
Q Consensus 458 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 537 (629)
+.|.+.++.... .+.. .....+|+. +.+.+++.++.++. ..++++++|+.|++++|. ++.++..
T Consensus 157 ~~L~L~~N~i~~-i~~~-----------~f~~~~L~~--l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~-l~~lp~~ 220 (350)
T 4ay9_X 157 VILWLNKNGIQE-IHNS-----------AFNGTQLDE--LNLSDNNNLEELPN-DVFHGASGPVILDISRTR-IHSLPSY 220 (350)
T ss_dssp EEEECCSSCCCE-ECTT-----------SSTTEEEEE--EECTTCTTCCCCCT-TTTTTEECCSEEECTTSC-CCCCCSS
T ss_pred hhhccccccccC-CChh-----------hccccchhH--HhhccCCcccCCCH-HHhccCcccchhhcCCCC-cCccChh
Confidence 778877764332 2211 123356777 89988889998865 457889999999999986 7777653
Q ss_pred cccccccccccccccccccccccccceeccCCCeeecCCCceeeecC
Q 047700 538 EEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVID 584 (629)
Q Consensus 538 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~ 584 (629)
.|.+|+.|.+.++.+++.+|. ...+++|+.+.+.+
T Consensus 221 ---------~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 ---------GLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp ---------SCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred ---------hhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 478888888888888998886 67789999998854
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=2e-14 Score=156.10 Aligned_cols=170 Identities=25% Similarity=0.327 Sum_probs=134.8
Q ss_pred cccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccc
Q 047700 267 DVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEK 346 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~ 346 (629)
..++.++.|++.++.+..++. +.. +++|+.|+|++|.+..+|. +..+++|++|+|++|.+..++.++.+++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~-l~~-------l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~ 110 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQG-IQY-------LPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKK 110 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTT-GGG-------CTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTT
T ss_pred hcCCCCCEEECcCCCCCCChH-Hcc-------CCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCC
Confidence 456788889999988888764 222 8899999999999988876 8899999999999999988888999999
Q ss_pred cceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCc
Q 047700 347 LENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPK 426 (629)
Q Consensus 347 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~ 426 (629)
|++|++++|.++.+| .+..+++|+.|++++| .+..++. ++.+++|+.|++++|.+....+ ..
T Consensus 111 L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~~~~--------------l~ 172 (605)
T 1m9s_A 111 LKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDIVP--------------LA 172 (605)
T ss_dssp CCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCCCCGG--------------GT
T ss_pred CCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCCCchh--------------hc
Confidence 999999999988875 4888999999999998 5666643 8899999999999987654211 12
Q ss_pred cccCcceEEccCcchhhhccccCChhhhcccceeeeccCCC
Q 047700 427 VISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKS 467 (629)
Q Consensus 427 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 467 (629)
.+++|+.|+|++|.++.+.. ...+++|+.|.+.++..
T Consensus 173 ~l~~L~~L~Ls~N~i~~l~~----l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQEC 209 (605)
T ss_dssp TCTTCCEEECCSSCCCBCGG----GTTCTTCSEEECCSEEE
T ss_pred cCCCCCEEECcCCCCCCChH----HccCCCCCEEEccCCcC
Confidence 35788999999998876521 35677888888887643
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=3.1e-14 Score=133.57 Aligned_cols=123 Identities=30% Similarity=0.403 Sum_probs=70.6
Q ss_pred EEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccch-hhhcccCCcEEEcCCcCCCC-c-ccccCcccccee
Q 047700 274 AVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQ-SVHLLSNLQTLCLDQCVLGD-I-SIIGNLEKLENL 350 (629)
Q Consensus 274 ~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L 350 (629)
.+...++.+..+|..+ .++|++|++++|.++.+|. .+..+++|++|++++|.++. + ..+..+++|++|
T Consensus 11 ~v~c~~~~l~~~p~~~---------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI---------PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYL 81 (208)
T ss_dssp EEECCSSCCSSCCSCC---------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EEEecCCCccCCCCCC---------CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEE
Confidence 4445555555555433 4456666666666665543 24566666666666666655 2 224566666666
Q ss_pred eccCCCCccCchh-hhcCccccEEeecCCCCCCccChhhhhcCccCceEEecccccc
Q 047700 351 SLVDSDIEWLPNE-IGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 351 ~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~ 406 (629)
++++|+++.+|.. ++++++|++|++++| .+..++...+.++++|+.|++++|.+.
T Consensus 82 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 82 NLSTNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccc
Confidence 6666666655543 356666666666665 445555444556666666666666543
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=2.2e-14 Score=133.33 Aligned_cols=147 Identities=20% Similarity=0.261 Sum_probs=120.3
Q ss_pred cCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccccceeeccCCCCcc-CchhhhcCccccEEeecC
Q 047700 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEW-LPNEIGELTQLRLLDLSS 377 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~ 377 (629)
+++|++|++++|.+..+| .+..+++|++|++++|.+..++.+..+++|++|++++|.++. .|..++.+++|++|++++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 889999999999999988 699999999999999998888899999999999999999985 678899999999999999
Q ss_pred CCCCCc-cChhhhhcCccCceEEecccc-ccccccCCCcccccccccccCccccCcceEEccCcchhhhccccCChhhhc
Q 047700 378 CWNLKV-IPPNVISKLTQLEELYMGNTF-VKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQ 455 (629)
Q Consensus 378 ~~~l~~-~p~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 455 (629)
| .+.. .|.. ++++++|++|++++|. +.. .+ ....+++|+.|++++|.+.++. +...++
T Consensus 122 n-~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~-~~-------------~l~~l~~L~~L~l~~n~i~~~~----~l~~l~ 181 (197)
T 4ezg_A 122 S-AHDDSILTK-INTLPKVNSIDLSYNGAITD-IM-------------PLKTLPELKSLNIQFDGVHDYR----GIEDFP 181 (197)
T ss_dssp S-BCBGGGHHH-HTTCSSCCEEECCSCTBCCC-CG-------------GGGGCSSCCEEECTTBCCCCCT----TGGGCS
T ss_pred C-ccCcHhHHH-HhhCCCCCEEEccCCCCccc-cH-------------hhcCCCCCCEEECCCCCCcChH----HhccCC
Confidence 8 4444 4444 8999999999999997 432 11 1233577888888888887542 345677
Q ss_pred ccceeeeccCC
Q 047700 456 NLKSLEVVSDK 466 (629)
Q Consensus 456 ~L~~L~l~~~~ 466 (629)
+|+.|++.++.
T Consensus 182 ~L~~L~l~~N~ 192 (197)
T 4ezg_A 182 KLNQLYAFSQT 192 (197)
T ss_dssp SCCEEEECBC-
T ss_pred CCCEEEeeCcc
Confidence 78888777654
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=7.8e-14 Score=134.97 Aligned_cols=167 Identities=23% Similarity=0.317 Sum_probs=135.0
Q ss_pred eCCeeeccccccccccceEEeccCCCCCCCCCC-CCCCCcchhccCCccEEEecCCcccccc-hhhhcccCCcEEEcCCc
Q 047700 256 RNDVLVGWLNNDVLKNCSAVSLNDIEIGVLPKG-LEYPQLEFFWMSKLRGLALSKMQLLSLP-QSVHLLSNLQTLCLDQC 333 (629)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~lp~~-~~~~~l~~l~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~ 333 (629)
.+..+...+. .....++.|+++++.+..++.. +.. +++|++|++++|.++.++ ..+..+++|++|++++|
T Consensus 22 ~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~-------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 22 QGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRG-------LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp TTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTT-------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcC-------cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 3334444333 3457899999999999887753 333 899999999999999765 45889999999999999
Q ss_pred CCCC-c-ccccCccccceeeccCCCCccCchh-hhcCccccEEeecCCCCCCccChhhhhcCccCceEEecccccccccc
Q 047700 334 VLGD-I-SIIGNLEKLENLSLVDSDIEWLPNE-IGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFE 410 (629)
Q Consensus 334 ~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~ 410 (629)
.++. + ..+..+++|++|++++|+++.+|.. ++.+++|++|++++| .++.+|...++.+++|+.|++++|.+....+
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 9998 3 4678999999999999999998876 588999999999998 7778887668999999999999998764222
Q ss_pred CCCcccccccccccCccccCcceEEccCcchhh
Q 047700 411 GKEGGAEASATFVFPKVISNLEELKLGGKDITM 443 (629)
Q Consensus 411 ~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~ 443 (629)
. ....+++|+.|++++|.+..
T Consensus 173 ~------------~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 173 G------------AFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp T------------TTTTCTTCCEEECCSCCBCT
T ss_pred H------------HHhCCCCCCEEEeeCCceeC
Confidence 1 22346889999999998863
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=5.9e-14 Score=132.69 Aligned_cols=149 Identities=16% Similarity=0.244 Sum_probs=118.4
Q ss_pred eEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccch-hhhcccCCcEEEcCCcCCCC--cccccCccccce
Q 047700 273 SAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQ-SVHLLSNLQTLCLDQCVLGD--ISIIGNLEKLEN 349 (629)
Q Consensus 273 ~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~ 349 (629)
+.+++.++.+..+|..+ .++|+.|++++|.++.+|. .+..+++|++|++++|.+.. +..+..+++|++
T Consensus 14 ~~v~c~~~~l~~iP~~l---------~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL---------PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp TEEECTTSCCSSCCSSC---------CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred CEEEcCCCCcCcCCCcc---------CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence 46788888888888755 5688999999999987764 68889999999999999887 467889999999
Q ss_pred eeccCCCCccCchh-hhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccc
Q 047700 350 LSLVDSDIEWLPNE-IGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVI 428 (629)
Q Consensus 350 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l 428 (629)
|++++|+++.+|.. +..+++|++|++++| .+..++...+..+++|+.|++++|.+....++ ....+
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~l 151 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG------------TFSPL 151 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT------------TTTTC
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHH------------HHhCC
Confidence 99999999988876 478999999999998 66666655588999999999999987542221 12235
Q ss_pred cCcceEEccCcchhh
Q 047700 429 SNLEELKLGGKDITM 443 (629)
Q Consensus 429 ~~L~~L~L~~~~~~~ 443 (629)
.+|+.|++++|.+..
T Consensus 152 ~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 152 RAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred CCCCEEEeCCCCcCC
Confidence 678888888887653
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=7.4e-14 Score=139.70 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=102.6
Q ss_pred cCCccEEEecCCccc--ccch--hhhcccCCcEEEcCCcCCCC--cccc--cCccccceeeccCCCCccC-c----hhhh
Q 047700 299 MSKLRGLALSKMQLL--SLPQ--SVHLLSNLQTLCLDQCVLGD--ISII--GNLEKLENLSLVDSDIEWL-P----NEIG 365 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~--~lp~--~l~~l~~L~~L~l~~~~l~~--~~~i--~~l~~L~~L~l~~~~l~~l-p----~~i~ 365 (629)
...++.|.+.++.+. .+.. .+..+.+|++|++++|.+.. |..+ +.+++|++|++++|.++.. | ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 456788888888775 1211 13345779999999999876 5556 8899999999999988842 2 3445
Q ss_pred cCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchhhhc
Q 047700 366 ELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMIC 445 (629)
Q Consensus 366 ~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~ 445 (629)
.+++|++|++++| .+..++...++++++|++|++++|.+.....-. ....+..+++|+.|++++|.++.+.
T Consensus 143 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------~~~~~~~l~~L~~L~Ls~N~l~~l~ 213 (310)
T 4glp_A 143 LKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLM--------AALCPHKFPAIQNLALRNTGMETPT 213 (310)
T ss_dssp BCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHH--------TTSCTTSSCCCCSCBCCSSCCCCHH
T ss_pred hccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhh--------HHHhhhcCCCCCEEECCCCCCCchH
Confidence 7899999999998 556666555889999999999999754311000 0012233566777777777665322
Q ss_pred cccCC-hhhhcccceeeeccCC
Q 047700 446 QDHLP-KHLFQNLKSLEVVSDK 466 (629)
Q Consensus 446 ~~~~~-~~~~~~L~~L~l~~~~ 466 (629)
..... ...+++|++|+++++.
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHNS 235 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTSC
T ss_pred HHHHHHHhcCCCCCEEECCCCC
Confidence 10000 1233555555555554
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=1.6e-15 Score=156.99 Aligned_cols=107 Identities=17% Similarity=0.184 Sum_probs=62.2
Q ss_pred cCCccEEEecCCcccc-----cchhhhcccCCcEEEcCCcCCCC-----ccc-------ccCccccceeeccCCCCcc--
Q 047700 299 MSKLRGLALSKMQLLS-----LPQSVHLLSNLQTLCLDQCVLGD-----ISI-------IGNLEKLENLSLVDSDIEW-- 359 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~l~~-----~~~-------i~~l~~L~~L~l~~~~l~~-- 359 (629)
+++|++|++++|.+.. ++..+..+++|++|++++|.+.. |.. +..+++|++|++++|.++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 5667777777776652 23345566777777777764432 222 2566777777777776664
Q ss_pred ---CchhhhcCccccEEeecCCCCCCccChhh----hhcC---------ccCceEEecccccc
Q 047700 360 ---LPNEIGELTQLRLLDLSSCWNLKVIPPNV----ISKL---------TQLEELYMGNTFVK 406 (629)
Q Consensus 360 ---lp~~i~~l~~L~~L~l~~~~~l~~~p~~~----i~~l---------~~L~~L~l~~~~~~ 406 (629)
+|..+.++++|++|++++| .++..+... +..+ ++|++|++++|.+.
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred HHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 5666666777777777776 333221111 2222 66666666666543
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=1.1e-13 Score=136.97 Aligned_cols=125 Identities=25% Similarity=0.381 Sum_probs=99.6
Q ss_pred cCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccccceeeccCCCCccCchhhhcCccccEEeecCC
Q 047700 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSC 378 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 378 (629)
+++|++|++++|.+..++. +..+++|++|++++|.+..++.++++++|++|++++|.++.+|. ++.+++|++|++++|
T Consensus 45 l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN 122 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS
T ss_pred cCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC
Confidence 7889999999999988864 88899999999999999885559999999999999999988765 889999999999998
Q ss_pred CCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchh
Q 047700 379 WNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDIT 442 (629)
Q Consensus 379 ~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~ 442 (629)
.+..++. +..+++|+.|++++|.+... + ....+++|+.|++++|.++
T Consensus 123 -~i~~~~~--l~~l~~L~~L~l~~n~l~~~-~-------------~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 123 -GISDING--LVHLPQLESLYLGNNKITDI-T-------------VLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp -CCCCCGG--GGGCTTCCEEECCSSCCCCC-G-------------GGGGCTTCSEEECCSSCCC
T ss_pred -cCCCChh--hcCCCCCCEEEccCCcCCcc-h-------------hhccCCCCCEEEccCCccc
Confidence 6666653 88899999999998876431 0 1122455666666666555
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=1.1e-13 Score=130.93 Aligned_cols=149 Identities=14% Similarity=0.189 Sum_probs=119.8
Q ss_pred eEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccc--hhhhcccCCcEEEcCCcCCCC-c-ccccCccccc
Q 047700 273 SAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLP--QSVHLLSNLQTLCLDQCVLGD-I-SIIGNLEKLE 348 (629)
Q Consensus 273 ~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~ 348 (629)
+.++++++.+..+|..+ ...+++|++++|.++.++ ..+..+++|++|++++|.++. + ..++.+++|+
T Consensus 14 ~~l~~s~n~l~~iP~~~---------~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI---------PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84 (220)
T ss_dssp TEEECCSSCCSSCCSCC---------CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEeEeCCCCcccCccCC---------CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence 47899999999998765 557789999999999774 348899999999999999988 3 4689999999
Q ss_pred eeeccCCCCccCchh-hhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCcc
Q 047700 349 NLSLVDSDIEWLPNE-IGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKV 427 (629)
Q Consensus 349 ~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~ 427 (629)
+|++++|.++.+|.. ++.+++|++|++++| .+..++...+..+++|+.|++++|.+....+. ....
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~ 151 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPG------------AFDT 151 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT------------TTTT
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHH------------HhcC
Confidence 999999999988764 788999999999998 56666555588999999999999987643221 1123
Q ss_pred ccCcceEEccCcchhh
Q 047700 428 ISNLEELKLGGKDITM 443 (629)
Q Consensus 428 l~~L~~L~L~~~~~~~ 443 (629)
+.+|+.|++++|.+..
T Consensus 152 l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 152 LHSLSTLNLLANPFNC 167 (220)
T ss_dssp CTTCCEEECCSCCEEC
T ss_pred CCCCCEEEecCcCCcC
Confidence 5778888888887763
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=2.5e-14 Score=155.33 Aligned_cols=166 Identities=22% Similarity=0.280 Sum_probs=118.7
Q ss_pred cccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccccc
Q 047700 269 LKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLE 348 (629)
Q Consensus 269 ~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~ 348 (629)
+..+..+.+..+.+..+.... .+++|+.|++++|.+..+| .+..+++|++|+|++|.+..++.+..+++|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~~~--------~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~ 90 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQN--------ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLG 90 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECHH--------HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCC
T ss_pred HHHHHHHhccCCCcccccchh--------cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCC
Confidence 334444555555444433221 1788999999999998887 4888999999999999998865689999999
Q ss_pred eeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccc
Q 047700 349 NLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVI 428 (629)
Q Consensus 349 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l 428 (629)
.|+|++|.++.+| .+..+++|+.|++++| .+..++. +..+++|+.|++++|.+... + ....+
T Consensus 91 ~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~l-~-------------~l~~l 152 (605)
T 1m9s_A 91 WLFLDENKIKDLS-SLKDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKITDI-T-------------VLSRL 152 (605)
T ss_dssp EEECCSSCCCCCT-TSTTCTTCCEEECTTS-CCCCCGG--GGGCTTCSEEECCSSCCCCC-G-------------GGGSC
T ss_pred EEECcCCCCCCCh-hhccCCCCCEEEecCC-CCCCCcc--ccCCCccCEEECCCCccCCc-h-------------hhccc
Confidence 9999999998877 6888999999999998 5666654 88899999999998876531 1 11234
Q ss_pred cCcceEEccCcchhhhccccCChhhhcccceeeeccC
Q 047700 429 SNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSD 465 (629)
Q Consensus 429 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 465 (629)
++|+.|+|++|.+..+.. ...+++|+.|.++++
T Consensus 153 ~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 153 TKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKN 185 (605)
T ss_dssp TTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCcCCCchh----hccCCCCCEEECcCC
Confidence 667777777776653321 334455555555554
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=1.7e-14 Score=144.45 Aligned_cols=202 Identities=16% Similarity=0.105 Sum_probs=107.4
Q ss_pred cCCccEEEecCCccc-ccchhh--hcccCCcEEEcCCcCCCC--c----ccccCccccceeeccCCCCccCc-hhhhcCc
Q 047700 299 MSKLRGLALSKMQLL-SLPQSV--HLLSNLQTLCLDQCVLGD--I----SIIGNLEKLENLSLVDSDIEWLP-NEIGELT 368 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~-~lp~~l--~~l~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~ 368 (629)
+++|++|++++|.+. ..|..+ ..+++|++|++++|.+.. + ..+..+++|++|++++|.++.+| ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 556777777777766 344444 667777777777777665 1 22345677777777777776554 4566777
Q ss_pred cccEEeecCCCCCCc--cC-hhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchhhhc
Q 047700 369 QLRLLDLSSCWNLKV--IP-PNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMIC 445 (629)
Q Consensus 369 ~L~~L~l~~~~~l~~--~p-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~ 445 (629)
+|++|++++|...+. ++ ...++.+++|++|++++|.+...... ...+...+.+|+.|++++|.+....
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~---------~~~l~~~l~~L~~L~Ls~N~l~~~~ 240 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV---------CAALAAAGVQPHSLDLSHNSLRATV 240 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH---------HHHHHHHTCCCSSEECTTSCCCCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH---------HHHHHhcCCCCCEEECCCCCCCccc
Confidence 777777777633221 11 11135667777777777765321000 0001122366777777777766431
Q ss_pred cccC-ChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCccccchHHHhcccCcceEE
Q 047700 446 QDHL-PKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLR 524 (629)
Q Consensus 446 ~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~ 524 (629)
...+ ....+++|++|+++++.... .+. ..+++|+. |+++++ .++.++. +..+++|+.|+
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~-------------~~~~~L~~--L~Ls~N-~l~~~~~---~~~l~~L~~L~ 300 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFAGLEQ-VPK-------------GLPAKLRV--LDLSSN-RLNRAPQ---PDELPEVDNLT 300 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSSCCCS-CCS-------------CCCSCCSC--EECCSC-CCCSCCC---TTSCCCCSCEE
T ss_pred hhhHHhccCcCcCCEEECCCCCCCc-hhh-------------hhcCCCCE--EECCCC-cCCCCch---hhhCCCccEEE
Confidence 1111 00112455666665543221 111 11245555 666553 3444322 34556666666
Q ss_pred Eeccc
Q 047700 525 IGGCK 529 (629)
Q Consensus 525 l~~c~ 529 (629)
+++|+
T Consensus 301 L~~N~ 305 (310)
T 4glp_A 301 LDGNP 305 (310)
T ss_dssp CSSTT
T ss_pred CcCCC
Confidence 66655
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=2e-13 Score=129.98 Aligned_cols=148 Identities=25% Similarity=0.321 Sum_probs=110.8
Q ss_pred ceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEcCCcCCCCc--ccccCccccc
Q 047700 272 CSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQCVLGDI--SIIGNLEKLE 348 (629)
Q Consensus 272 l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~~--~~i~~l~~L~ 348 (629)
.+.++..++.+..+|..+ .++|++|++++|.++.+ |..+..+++|++|++++|.+..+ ..+..+++|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~---------~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 91 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI---------PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91 (229)
T ss_dssp TTEEECTTSCCSSCCSCC---------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEeEccCCCcCccCCCC---------CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence 345777788888888755 57888888888888866 56678888888888888888773 3467888888
Q ss_pred eeeccCCCCccCchh-hhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCcc
Q 047700 349 NLSLVDSDIEWLPNE-IGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKV 427 (629)
Q Consensus 349 ~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~ 427 (629)
+|++++|.++.+|.. +..+++|++|++++| .+..+|.. +..+++|+.|++++|.+....+. ....
T Consensus 92 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~~------------~~~~ 157 (229)
T 3e6j_A 92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSIPHG------------AFDR 157 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCCCTT------------TTTT
T ss_pred EEECCCCcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCccCHH------------HHhC
Confidence 888888888888765 478888888888887 66778776 78888888888888876532110 1123
Q ss_pred ccCcceEEccCcchh
Q 047700 428 ISNLEELKLGGKDIT 442 (629)
Q Consensus 428 l~~L~~L~L~~~~~~ 442 (629)
+++|+.|++++|.+.
T Consensus 158 l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTCCEEECTTSCBC
T ss_pred CCCCCEEEeeCCCcc
Confidence 466777777777665
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.50 E-value=1.4e-13 Score=147.70 Aligned_cols=135 Identities=23% Similarity=0.378 Sum_probs=105.6
Q ss_pred ccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccccce
Q 047700 270 KNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLEN 349 (629)
Q Consensus 270 ~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~ 349 (629)
.+++.|++.++.+..+|..+ +++|++|++++|.++.+| ..+++|++|++++|.++.++.+++ +|++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l---------~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~ 124 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL---------PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKH 124 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC---------CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCE
T ss_pred CCccEEEeCCCCCCccCHhH---------cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCE
Confidence 47889999999888888755 578999999999998888 457889999999998888444555 8999
Q ss_pred eeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCcccc
Q 047700 350 LSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVIS 429 (629)
Q Consensus 350 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 429 (629)
|++++|+++.+|. .+++|+.|++++| .++.+|. .+++|+.|++++|.+.. +|.-..
T Consensus 125 L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~~----------------lp~l~~ 180 (571)
T 3cvr_A 125 LDVDNNQLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQLTF----------------LPELPE 180 (571)
T ss_dssp EECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC----------------CCCCCT
T ss_pred EECCCCcCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCCCC----------------cchhhC
Confidence 9999998888887 6788999999887 5666775 56788888888887643 332116
Q ss_pred CcceEEccCcchh
Q 047700 430 NLEELKLGGKDIT 442 (629)
Q Consensus 430 ~L~~L~L~~~~~~ 442 (629)
+|+.|+|++|.++
T Consensus 181 ~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 181 SLEALDVSTNLLE 193 (571)
T ss_dssp TCCEEECCSSCCS
T ss_pred CCCEEECcCCCCC
Confidence 7778888777776
No 108
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=2.7e-15 Score=155.28 Aligned_cols=255 Identities=17% Similarity=0.137 Sum_probs=173.1
Q ss_pred CccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC--c----ccccCccccceeeccCCCCc----cCchhh------
Q 047700 301 KLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD--I----SIIGNLEKLENLSLVDSDIE----WLPNEI------ 364 (629)
Q Consensus 301 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~l~----~lp~~i------ 364 (629)
.|+...+....+..++..+..+++|++|++++|.+.. + ..+.++++|++|++++|.+. .+|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 3444444444556788889999999999999999877 2 33778999999999998555 345554
Q ss_pred -hcCccccEEeecCCCCCCc-----cChhhhhcCccCceEEeccccccccccCCCcccccccccccCccc----------
Q 047700 365 -GELTQLRLLDLSSCWNLKV-----IPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVI---------- 428 (629)
Q Consensus 365 -~~l~~L~~L~l~~~~~l~~-----~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l---------- 428 (629)
.++++|++|++++| .++. +|.. +.++++|++|++++|.+...... .++..+
T Consensus 90 l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~~-----------~l~~~l~~l~~~~~~~ 156 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAGA-----------KIARALQELAVNKKAK 156 (386)
T ss_dssp HTTCTTCCEEECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred HhhCCcccEEECCCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHHH-----------HHHHHHHHHhhhhhcc
Confidence 68999999999998 4444 4544 78999999999999987422110 122222
Q ss_pred --cCcceEEccCcchhhhccccC--ChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCC
Q 047700 429 --SNLEELKLGGKDITMICQDHL--PKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKR 504 (629)
Q Consensus 429 --~~L~~L~L~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~ 504 (629)
++|+.|++++|.+.......+ ....+++|++|.+.+|.........+.+ -.+..+++|+. |+|++|.
T Consensus 157 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~------~~l~~~~~L~~--L~Ls~n~- 227 (386)
T 2ca6_A 157 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL------EGLAYCQELKV--LDLQDNT- 227 (386)
T ss_dssp TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHH------TTGGGCTTCCE--EECCSSC-
T ss_pred cCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHH------HHhhcCCCccE--EECcCCC-
Confidence 789999999998863211100 1235678999999988543211000000 00457789999 9999965
Q ss_pred Cc-----cccchHHHhcccCcceEEEecccccce----eccccccccccccccccccccccccccccce-----eccCCC
Q 047700 505 LK-----NLVSSFTAKSLVHLMKLRIGGCKLMTE----IISSEEDVEEDEVVFSRLKWLSLECLESLTS-----FCSGNC 570 (629)
Q Consensus 505 l~-----~l~~~~~l~~l~~L~~L~l~~c~~l~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~ 570 (629)
++ .++ ..+..+++|+.|++++|..... ++.... ...+++|+.|+|++|. +.. ++. .
T Consensus 228 l~~~g~~~l~--~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-----~~~~~~L~~L~L~~n~-i~~~g~~~l~~--~ 297 (386)
T 2ca6_A 228 FTHLGSSALA--IALKSWPNLRELGLNDCLLSARGAAAVVDAFS-----KLENIGLQTLRLQYNE-IELDAVRTLKT--V 297 (386)
T ss_dssp CHHHHHHHHH--HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH-----TCSSCCCCEEECCSSC-CBHHHHHHHHH--H
T ss_pred CCcHHHHHHH--HHHccCCCcCEEECCCCCCchhhHHHHHHHHh-----hccCCCeEEEECcCCc-CCHHHHHHHHH--H
Confidence 42 222 3467899999999999984332 111110 0137999999999964 444 554 3
Q ss_pred e-eecCCCceeeecCCCC
Q 047700 571 T-FKFPSLEDLFVIDCPK 587 (629)
Q Consensus 571 ~-~~~p~L~~L~i~~c~~ 587 (629)
. ..+|+|++|++++|+-
T Consensus 298 l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 298 IDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHCTTCCEEECTTSBS
T ss_pred HHhcCCCceEEEccCCcC
Confidence 3 4589999999999873
No 109
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=4.2e-15 Score=163.19 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=17.6
Q ss_pred cccccccccccccccceeccCCCeeecCCCceeeecCCCC
Q 047700 548 FSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLFVIDCPK 587 (629)
Q Consensus 548 ~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~i~~c~~ 587 (629)
+++|+.|++++|+. ...........+|+|++|++++|+.
T Consensus 480 ~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 480 CDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 45555555555543 2111100123355555555555553
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=2e-13 Score=132.83 Aligned_cols=148 Identities=20% Similarity=0.276 Sum_probs=103.5
Q ss_pred cccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccc
Q 047700 267 DVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEK 346 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~ 346 (629)
..+++++.|++.++.+..++ .+.. +++|++|++++|.++.+|. +..+++|++|++++|.++.++.+.. ++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~-~l~~-------l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~ 107 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA-GMQF-------FTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-AC 107 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT-TGGG-------CTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SS
T ss_pred hhcCcCcEEECcCCCcccch-HHhh-------CCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc-Cc
Confidence 34567778888877777766 2222 6778888888888777766 7777888888888887777554555 77
Q ss_pred cceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCc
Q 047700 347 LENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPK 426 (629)
Q Consensus 347 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~ 426 (629)
|++|++++|+++.+| .++++++|+.|++++| .++.++. ++.+++|+.|++++|.+... . ...
T Consensus 108 L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~~-~-------------~l~ 169 (263)
T 1xeu_A 108 LSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITNT-G-------------GLT 169 (263)
T ss_dssp CCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCBC-T-------------TST
T ss_pred ccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcch-H-------------Hhc
Confidence 888888888777765 4777788888888877 5666653 77778888888887766532 1 122
Q ss_pred cccCcceEEccCcchh
Q 047700 427 VISNLEELKLGGKDIT 442 (629)
Q Consensus 427 ~l~~L~~L~L~~~~~~ 442 (629)
.+++|+.|++++|.+.
T Consensus 170 ~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TCCCCCEEEEEEEEEE
T ss_pred cCCCCCEEeCCCCccc
Confidence 3566777777777665
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=5.4e-14 Score=136.89 Aligned_cols=167 Identities=23% Similarity=0.258 Sum_probs=125.9
Q ss_pred cccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccc
Q 047700 267 DVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEK 346 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~ 346 (629)
..+..+..+.+.++.+..++. ... +++|++|++++|.++.+| .+..+++|++|++++|.+..++.++.+++
T Consensus 16 ~~l~~l~~l~l~~~~i~~~~~-~~~-------l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~ 86 (263)
T 1xeu_A 16 PGLANAVKQNLGKQSVTDLVS-QKE-------LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTK 86 (263)
T ss_dssp HHHHHHHHHHHTCSCTTSEEC-HHH-------HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSS
T ss_pred HHHHHHHHHHhcCCCcccccc-hhh-------cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCC
Confidence 345566777788777776662 211 889999999999999888 68899999999999999988555899999
Q ss_pred cceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCc
Q 047700 347 LENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPK 426 (629)
Q Consensus 347 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~ 426 (629)
|++|++++|+++.+|.... ++|++|++++| .++.++. ++.+++|+.|++++|.+.... ...
T Consensus 87 L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~~~--------------~l~ 147 (263)
T 1xeu_A 87 LEELSVNRNRLKNLNGIPS--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKSIV--------------MLG 147 (263)
T ss_dssp CCEEECCSSCCSCCTTCCC--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCCBCG--------------GGG
T ss_pred CCEEECCCCccCCcCcccc--CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCCCCh--------------HHc
Confidence 9999999999998876443 89999999998 6677664 889999999999998765311 112
Q ss_pred cccCcceEEccCcchhhhccccCChhhhcccceeeeccC
Q 047700 427 VISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSD 465 (629)
Q Consensus 427 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 465 (629)
.+.+|+.|++++|.+++. -....+++|+.|++.++
T Consensus 148 ~l~~L~~L~L~~N~i~~~----~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 148 FLSKLEVLDLHGNEITNT----GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp GCTTCCEEECTTSCCCBC----TTSTTCCCCCEEEEEEE
T ss_pred cCCCCCEEECCCCcCcch----HHhccCCCCCEEeCCCC
Confidence 357788888888877754 11244566666666654
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=2.5e-14 Score=146.49 Aligned_cols=106 Identities=16% Similarity=0.221 Sum_probs=55.0
Q ss_pred CCccEEEecCCcccccc-----hhhhccc-CCcEEEcCCcCCCC--cccccCc-----cccceeeccCCCCccCc-hh--
Q 047700 300 SKLRGLALSKMQLLSLP-----QSVHLLS-NLQTLCLDQCVLGD--ISIIGNL-----EKLENLSLVDSDIEWLP-NE-- 363 (629)
Q Consensus 300 ~~L~~L~l~~~~~~~lp-----~~l~~l~-~L~~L~l~~~~l~~--~~~i~~l-----~~L~~L~l~~~~l~~lp-~~-- 363 (629)
++|++|++++|.+...+ ..+..++ +|++|++++|.+.. +..+..+ ++|++|++++|.++..+ ..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 34666666666665443 3445555 56666666666554 3334433 56666666666655332 22
Q ss_pred --hhcC-ccccEEeecCCCCCCccChhhhhc-----CccCceEEecccccc
Q 047700 364 --IGEL-TQLRLLDLSSCWNLKVIPPNVISK-----LTQLEELYMGNTFVK 406 (629)
Q Consensus 364 --i~~l-~~L~~L~l~~~~~l~~~p~~~i~~-----l~~L~~L~l~~~~~~ 406 (629)
+..+ ++|++|++++| .++..+...+.. .++|++|++++|.+.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 2333 56666666665 344444322222 245666666666543
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=2.7e-13 Score=138.61 Aligned_cols=153 Identities=21% Similarity=0.221 Sum_probs=106.7
Q ss_pred eEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchh-hh-cccCCcEEEcCCcCCCC--cccccCccccc
Q 047700 273 SAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQS-VH-LLSNLQTLCLDQCVLGD--ISIIGNLEKLE 348 (629)
Q Consensus 273 ~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~-l~-~l~~L~~L~l~~~~l~~--~~~i~~l~~L~ 348 (629)
+.+++.++.+..+|..+ .+.+++|+|++|.++.++.. +. .+.+|++|+|++|.+.. +..+..+++|+
T Consensus 21 ~~l~c~~~~l~~iP~~~---------~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL---------PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp TEEECCSSCCSSCCSSC---------CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEEEeCCCCcCccCccC---------CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 46777778888887654 45678888888888876544 44 77888888888888877 24577888888
Q ss_pred eeeccCCCCccCch-hhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCcc
Q 047700 349 NLSLVDSDIEWLPN-EIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKV 427 (629)
Q Consensus 349 ~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~ 427 (629)
+|++++|+++.+|. .+..+++|++|++++| .+..++...+.++++|+.|++++|.+........ .-...
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~---------~~~~~ 161 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI---------KDGNK 161 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT---------C----
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHh---------cCccc
Confidence 88888888887765 4677888888888887 5566555457888888888888887653111000 00023
Q ss_pred ccCcceEEccCcchhhh
Q 047700 428 ISNLEELKLGGKDITMI 444 (629)
Q Consensus 428 l~~L~~L~L~~~~~~~~ 444 (629)
+.+|+.|+|++|.++.+
T Consensus 162 l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 162 LPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CTTCCEEECCSSCCCCC
T ss_pred CCcCCEEECCCCCCCcc
Confidence 56788888888877743
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=4.3e-13 Score=127.62 Aligned_cols=132 Identities=27% Similarity=0.320 Sum_probs=116.4
Q ss_pred cccccceEEeccCCCCCCCCC-CCCCCCcchhccCCccEEEecCCcccccch-hhhcccCCcEEEcCCcCCCC-c-cccc
Q 047700 267 DVLKNCSAVSLNDIEIGVLPK-GLEYPQLEFFWMSKLRGLALSKMQLLSLPQ-SVHLLSNLQTLCLDQCVLGD-I-SIIG 342 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~-~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~-~-~~i~ 342 (629)
....+++.|++++|.+..+++ .+.. +++|++|++++|.+..+|. .+..+++|++|++++|.++. + ..+.
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~-------l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 109 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLEPGVFDS-------LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTT-------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCCEEEcCCCccCccCHHHhhC-------ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhC
Confidence 356889999999999988754 3333 8999999999999998875 46899999999999999998 3 3478
Q ss_pred CccccceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEecccccc
Q 047700 343 NLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 343 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~ 406 (629)
.+++|++|++++|+++.+|..+..+++|++|++++| .+..++...+..+++|+.|++.+|.+.
T Consensus 110 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 999999999999999999999999999999999998 777888766899999999999999865
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=7.6e-13 Score=142.07 Aligned_cols=93 Identities=25% Similarity=0.372 Sum_probs=44.3
Q ss_pred CccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCcccccCccccceeeccCCCCccCchhhhcCccccEEeecCCCC
Q 047700 301 KLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWN 380 (629)
Q Consensus 301 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 380 (629)
+|++|++++|.++.+|..+ +++|++|++++|.++.++ +.+++|++|++++|+++.+|. +.+ +|++|++++| .
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N-~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN-Q 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS-C
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC-c
Confidence 4455555555555444433 244555555555554433 334455555555555555444 332 4555555554 3
Q ss_pred CCccChhhhhcCccCceEEeccccc
Q 047700 381 LKVIPPNVISKLTQLEELYMGNTFV 405 (629)
Q Consensus 381 l~~~p~~~i~~l~~L~~L~l~~~~~ 405 (629)
++.+|. .+++|+.|++++|.+
T Consensus 132 l~~lp~----~l~~L~~L~Ls~N~l 152 (571)
T 3cvr_A 132 LTMLPE----LPALLEYINADNNQL 152 (571)
T ss_dssp CSCCCC----CCTTCCEEECCSSCC
T ss_pred CCCCCC----cCccccEEeCCCCcc
Confidence 333443 344555555555543
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=4.2e-14 Score=144.85 Aligned_cols=259 Identities=13% Similarity=0.068 Sum_probs=165.5
Q ss_pred EEEecCCcccc-cchhhhcccCCcEEEcCCcCCCC--c----ccccCcc-ccceeeccCCCCccC-chhhhcC-----cc
Q 047700 304 GLALSKMQLLS-LPQSVHLLSNLQTLCLDQCVLGD--I----SIIGNLE-KLENLSLVDSDIEWL-PNEIGEL-----TQ 369 (629)
Q Consensus 304 ~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~l~~--~----~~i~~l~-~L~~L~l~~~~l~~l-p~~i~~l-----~~ 369 (629)
++++++|.++. +|..+....+|++|++++|.+.. + ..+..++ +|++|++++|.++.. +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788898884 45555556669999999999987 2 5577888 899999999999855 5556554 99
Q ss_pred ccEEeecCCCCCCccChhhhhc----C-ccCceEEeccccccccccCCCcccccccccccCcc-ccCcceEEccCcchhh
Q 047700 370 LRLLDLSSCWNLKVIPPNVISK----L-TQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKV-ISNLEELKLGGKDITM 443 (629)
Q Consensus 370 L~~L~l~~~~~l~~~p~~~i~~----l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~L~~L~L~~~~~~~ 443 (629)
|++|++++| .++..+...+.. + ++|++|++++|.+....... +...... ..+|+.|++++|.+.+
T Consensus 82 L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~--------l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 82 VTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE--------FKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp CCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH--------HHHHHTTSCTTCCEEECTTSCGGG
T ss_pred ccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH--------HHHHHHhCCCceeEEEccCCcCCH
Confidence 999999998 456555443444 4 89999999999875422100 0000111 1589999999999884
Q ss_pred hccccCC--hhhh-cccceeeeccCCCCceeeccccccCchhhhhhccc-cCceeeeEEEecCCCCccccc---hHHHhc
Q 047700 444 ICQDHLP--KHLF-QNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQF-IQRDIFKWRVSYCKRLKNLVS---SFTAKS 516 (629)
Q Consensus 444 ~~~~~~~--~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~-~~L~~~~L~l~~c~~l~~l~~---~~~l~~ 516 (629)
.....++ .... ++|++|++++|......+..+. .. +..+ ++|+. |++++|. ++.... ...+..
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~------~~-l~~~~~~L~~--L~Ls~N~-i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA------KF-LASIPASVTS--LDLSANL-LGLKSYAELAYIFSS 222 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH------HH-HHTSCTTCCE--EECTTSC-GGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH------HH-HHhCCCCCCE--EECCCCC-CChhHHHHHHHHHhc
Confidence 3221111 1123 3899999998854332221111 11 3344 48999 9999864 554211 122334
Q ss_pred -ccCcceEEEecccccceecccccccccccccccccccccccccc-------ccceeccCCCeeecCCCceeeecCCC
Q 047700 517 -LVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLE-------SLTSFCSGNCTFKFPSLEDLFVIDCP 586 (629)
Q Consensus 517 -l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~l~~~~~~~~~~~~p~L~~L~i~~c~ 586 (629)
.++|++|++++|. +...+.... ......+++|+.|++++|. .+..++. ....+++|+.|++++++
T Consensus 223 ~~~~L~~L~Ls~N~-l~~~~~~~l--~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~--~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 223 IPNHVVSLNLCLNC-LHGPSLENL--KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA--AFPNIQKIILVDKNGKE 295 (362)
T ss_dssp SCTTCCEEECCSSC-CCCCCHHHH--HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT--TSTTCCEEEEECTTSCB
T ss_pred CCCCceEEECcCCC-CCcHHHHHH--HHHHhcCCCccEEEeccCCccccCHHHHHHHHH--HhccCCceEEEecCCCc
Confidence 4599999999987 333322100 0111257899999999875 1333333 34567778888888776
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.45 E-value=5.6e-13 Score=123.04 Aligned_cols=124 Identities=23% Similarity=0.386 Sum_probs=110.8
Q ss_pred eEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCCc--ccccCcccccee
Q 047700 273 SAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGDI--SIIGNLEKLENL 350 (629)
Q Consensus 273 ~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~--~~i~~l~~L~~L 350 (629)
+.+++.++.+..+|..+ .++|++|++++|.++.+|..+..+++|++|++++|.++.+ ..+..+++|++|
T Consensus 13 ~~l~~~~~~l~~ip~~~---------~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---------PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83 (193)
T ss_dssp TEEECTTSCCSSCCSCC---------CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCCCcCCCCC---------CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence 57889999999999765 5789999999999999999999999999999999999983 569999999999
Q ss_pred eccCCCCccCch-hhhcCccccEEeecCCCCCCccChhhhhcCccCceEEecccccc
Q 047700 351 SLVDSDIEWLPN-EIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 351 ~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~ 406 (629)
++++|.++.+|. .+..+++|++|++++| .+..+|...+..+++|+.|++++|.+.
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 999999998875 5889999999999998 777888876889999999999998764
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=4.8e-13 Score=125.35 Aligned_cols=149 Identities=24% Similarity=0.354 Sum_probs=124.7
Q ss_pred cccccceEEeccCCCCCCCCCCC-CCCCcchhccCCccEEEecCCcccccchh-hhcccCCcEEEcCCcCCCC-c-cccc
Q 047700 267 DVLKNCSAVSLNDIEIGVLPKGL-EYPQLEFFWMSKLRGLALSKMQLLSLPQS-VHLLSNLQTLCLDQCVLGD-I-SIIG 342 (629)
Q Consensus 267 ~~~~~l~~L~l~~~~~~~lp~~~-~~~~l~~l~~~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~-~-~~i~ 342 (629)
...++++.|++.++.+..++... .. +++|++|++++|.++.+|.. +..+++|++|++++|.+.. + ..++
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~-------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 97 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDE-------LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD 97 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTT-------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcc-------cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhc
Confidence 34668999999999998887643 23 89999999999999988754 6889999999999999998 3 3478
Q ss_pred CccccceeeccCCCCccCchh-hhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccc
Q 047700 343 NLEKLENLSLVDSDIEWLPNE-IGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASAT 421 (629)
Q Consensus 343 ~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 421 (629)
.+++|++|++++|.++.+|.. +.++++|++|++++| .+..++...+..+++|+.|++++|.+..
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------------- 162 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------------- 162 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCC--------------
T ss_pred CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeec--------------
Confidence 999999999999999988875 689999999999998 6777777668899999999999996532
Q ss_pred cccCccccCcceEEccCcchh
Q 047700 422 FVFPKVISNLEELKLGGKDIT 442 (629)
Q Consensus 422 ~~~p~~l~~L~~L~L~~~~~~ 442 (629)
.+++|+.|++..|.+.
T Consensus 163 -----~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 163 -----TCPGIRYLSEWINKHS 178 (208)
T ss_dssp -----CTTTTHHHHHHHHHCT
T ss_pred -----CCCCHHHHHHHHHhCC
Confidence 2456777777777666
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=3.5e-13 Score=121.63 Aligned_cols=105 Identities=29% Similarity=0.255 Sum_probs=51.0
Q ss_pred CCccEEEecCCccc--ccchhhhcccCCcEEEcCCcCCCCcccccCccccceeeccCCCCcc-CchhhhcCccccEEeec
Q 047700 300 SKLRGLALSKMQLL--SLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEW-LPNEIGELTQLRLLDLS 376 (629)
Q Consensus 300 ~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~ 376 (629)
++|++|++++|.++ .+|..+..+++|++|++++|.+..++.++.+++|++|++++|.++. +|..++++++|++|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 44555555555554 4444445555555555555554444444455555555555555544 44444445555555555
Q ss_pred CCCCCCccCh-hhhhcCccCceEEeccccc
Q 047700 377 SCWNLKVIPP-NVISKLTQLEELYMGNTFV 405 (629)
Q Consensus 377 ~~~~l~~~p~-~~i~~l~~L~~L~l~~~~~ 405 (629)
+| .+..+|. ..+..+++|+.|++++|.+
T Consensus 104 ~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 104 GN-KLKDISTLEPLKKLECLKSLDLFNCEV 132 (168)
T ss_dssp SS-SCCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred CC-ccCcchhHHHHhcCCCCCEEEeeCCcC
Confidence 54 3333331 1244455555555555443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=3.5e-13 Score=121.58 Aligned_cols=130 Identities=19% Similarity=0.229 Sum_probs=112.6
Q ss_pred ccccceEEeccCCCCC--CCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cc-cccC
Q 047700 268 VLKNCSAVSLNDIEIG--VLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-IS-IIGN 343 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~--~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~-~i~~ 343 (629)
.+++++.|++.+|.+. .+|..+.. +++|++|++++|.++.+ ..+..+++|++|++++|.+.. ++ .++.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~-------l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAE-------FVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGG-------GGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHh-------CCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 3478999999999987 78876443 89999999999999987 678999999999999999988 54 4556
Q ss_pred ccccceeeccCCCCccCc--hhhhcCccccEEeecCCCCCCccCh---hhhhcCccCceEEecccccc
Q 047700 344 LEKLENLSLVDSDIEWLP--NEIGELTQLRLLDLSSCWNLKVIPP---NVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 344 l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~p~---~~i~~l~~L~~L~l~~~~~~ 406 (629)
+++|++|++++|.++.+| ..+..+++|++|++++| .+..+|. ..+..+++|+.|++.+|...
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 999999999999999987 68899999999999998 6666665 45899999999999998754
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=8.7e-13 Score=124.63 Aligned_cols=141 Identities=23% Similarity=0.320 Sum_probs=118.4
Q ss_pred CCeeeccccccccccceEEeccCCCCCCCCCC-CCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEcCCcC
Q 047700 257 NDVLVGWLNNDVLKNCSAVSLNDIEIGVLPKG-LEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQCV 334 (629)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~lp~~-~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~ 334 (629)
+..+...+. ...+.++.|++.+|.+..++.. +.. +++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 20 ~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~-------l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 20 GKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSP-------YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTT-------CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhC-------CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 333444333 3457899999999999988863 333 88999999999999976 7789999999999999999
Q ss_pred CCC-cc-cccCccccceeeccCCCCccC-chhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEecccccc
Q 047700 335 LGD-IS-IIGNLEKLENLSLVDSDIEWL-PNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 335 l~~-~~-~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~ 406 (629)
++. ++ .+..+++|++|++++|.++.+ |..+..+++|++|++++| .+..++...+..+++|+.|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999 43 378999999999999999977 467889999999999998 677777766899999999999999764
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.42 E-value=9.6e-13 Score=124.32 Aligned_cols=145 Identities=19% Similarity=0.263 Sum_probs=117.8
Q ss_pred EeCCeeeccccccccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccch-hhhcccCCcEEEcCCc
Q 047700 255 VRNDVLVGWLNNDVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQ-SVHLLSNLQTLCLDQC 333 (629)
Q Consensus 255 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~ 333 (629)
.++..+...+. .....++.|++++|.+..++..-.+. .+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 18 ~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~-----~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 18 CSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFK-----KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp CCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGG-----GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhc-----cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 33444444333 44567899999999998885421111 18999999999999998765 7999999999999999
Q ss_pred CCCC-c-ccccCccccceeeccCCCCccC-chhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEecccccc
Q 047700 334 VLGD-I-SIIGNLEKLENLSLVDSDIEWL-PNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 334 ~l~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~ 406 (629)
.+.. + ..+..+++|++|++++|+++.+ |..+..+++|++|++++| .+..++...+..+++|+.|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9998 3 4589999999999999999977 567899999999999998 666665555999999999999999865
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=4.1e-13 Score=118.48 Aligned_cols=122 Identities=22% Similarity=0.282 Sum_probs=67.8
Q ss_pred ccceEEeccCCCCC--CCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-c-ccccCcc
Q 047700 270 KNCSAVSLNDIEIG--VLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-I-SIIGNLE 345 (629)
Q Consensus 270 ~~l~~L~l~~~~~~--~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~i~~l~ 345 (629)
++++.|++.+|.+. .+|..+.. +++|++|++++|.++.+ ..++.+++|++|++++|.+.. + ..++.++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~-------l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDE-------FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTT-------CTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred ccCeEEEccCCcCChhHHHHHHhh-------cCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 45666666666655 45543332 55666666666666555 445556666666666666555 3 2333456
Q ss_pred ccceeeccCCCCccCc--hhhhcCccccEEeecCCCCCCccCh---hhhhcCccCceEEe
Q 047700 346 KLENLSLVDSDIEWLP--NEIGELTQLRLLDLSSCWNLKVIPP---NVISKLTQLEELYM 400 (629)
Q Consensus 346 ~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~p~---~~i~~l~~L~~L~l 400 (629)
+|++|++++|.++.+| ..++.+++|++|++++| .+...|. ..++.+++|+.|++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 6666666666665543 45556666666666665 3444443 33555566665554
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=1e-12 Score=121.24 Aligned_cols=125 Identities=18% Similarity=0.255 Sum_probs=105.9
Q ss_pred eEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchh--hhcccCCcEEEcCCcCCCC--cccccCccccc
Q 047700 273 SAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQS--VHLLSNLQTLCLDQCVLGD--ISIIGNLEKLE 348 (629)
Q Consensus 273 ~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~--l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~ 348 (629)
+.++++++.+..+|..+ ..+|++|++++|.++.++.. +..+++|++|++++|.++. +..++.+++|+
T Consensus 11 ~~l~~s~~~l~~ip~~~---------~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI---------PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp TEEECTTSCCSSCCSCC---------CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CEEEcCCCCcCcCccCC---------CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 67899999999999755 45899999999999988753 8899999999999999988 46789999999
Q ss_pred eeeccCCCCccCchh-hhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccc
Q 047700 349 NLSLVDSDIEWLPNE-IGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKW 407 (629)
Q Consensus 349 ~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~ 407 (629)
+|++++|+++.++.. ++.+++|++|++++| .+..++...+..+++|+.|++++|.+..
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 999999999977654 788999999999998 5555544448899999999999997653
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=9.2e-13 Score=116.22 Aligned_cols=108 Identities=24% Similarity=0.230 Sum_probs=95.3
Q ss_pred cCCccEEEecCCccc--ccchhhhcccCCcEEEcCCcCCCCcccccCccccceeeccCCCCcc-CchhhhcCccccEEee
Q 047700 299 MSKLRGLALSKMQLL--SLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEW-LPNEIGELTQLRLLDL 375 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l 375 (629)
.++|+.|++++|.++ .+|..+..+++|++|++++|.+..++.++.+++|++|++++|.++. +|..++.+++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 678999999999998 8898889999999999999999888889999999999999999997 8888888999999999
Q ss_pred cCCCCCCccCh-hhhhcCccCceEEeccccccc
Q 047700 376 SSCWNLKVIPP-NVISKLTQLEELYMGNTFVKW 407 (629)
Q Consensus 376 ~~~~~l~~~p~-~~i~~l~~L~~L~l~~~~~~~ 407 (629)
++| .++.++. ..++.+++|++|++++|.+..
T Consensus 96 s~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 96 SGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp TTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred CCC-cCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 998 5666541 338899999999999997653
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=1e-12 Score=119.50 Aligned_cols=105 Identities=15% Similarity=0.167 Sum_probs=46.3
Q ss_pred cCCccEEEecCCcccccchhhhccc-CCcEEEcCCcCCCCcccccCccccceeeccCCCCccCchhh-hcCccccEEeec
Q 047700 299 MSKLRGLALSKMQLLSLPQSVHLLS-NLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEI-GELTQLRLLDLS 376 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp~~l~~l~-~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~ 376 (629)
+.+|++|++++|.++.+|. +..+. +|++|++++|.++.++.++.+++|++|++++|.++.+|..+ +.+++|++|+++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 3444444444444444432 22222 44444444444444444444444444444444444444332 444444444444
Q ss_pred CCCCCCccCh-hhhhcCccCceEEeccccc
Q 047700 377 SCWNLKVIPP-NVISKLTQLEELYMGNTFV 405 (629)
Q Consensus 377 ~~~~l~~~p~-~~i~~l~~L~~L~l~~~~~ 405 (629)
+| .++.+|. ..++.+++|+.|++++|.+
T Consensus 97 ~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 97 NN-SLVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp SC-CCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred CC-cCCcchhhHhhhcCCCCCEEEecCCCC
Confidence 44 3333332 1144444444444444443
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.35 E-value=3.6e-12 Score=130.26 Aligned_cols=165 Identities=21% Similarity=0.240 Sum_probs=129.6
Q ss_pred EeCCeeeccccccccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccc-hhhhcccCCcEEEcCCc
Q 047700 255 VRNDVLVGWLNNDVLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLP-QSVHLLSNLQTLCLDQC 333 (629)
Q Consensus 255 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~ 333 (629)
..+..+...+. ...+.++.|++++|.+..++...-... +++|++|+|++|.++.++ ..+..+++|++|+|++|
T Consensus 25 c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~-----l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 25 CSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTR-----LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp CCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSC-----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhc-----ccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 33444444443 456779999999999998886532101 899999999999999876 46899999999999999
Q ss_pred CCCC-c-ccccCccccceeeccCCCCccC-chhhhcCccccEEeecCCCCCCccChhhh---hcCccCceEEeccccccc
Q 047700 334 VLGD-I-SIIGNLEKLENLSLVDSDIEWL-PNEIGELTQLRLLDLSSCWNLKVIPPNVI---SKLTQLEELYMGNTFVKW 407 (629)
Q Consensus 334 ~l~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~i---~~l~~L~~L~l~~~~~~~ 407 (629)
.+.. + ..+..+++|++|++++|.++.+ |..+..+++|++|++++| .+..+|...+ ..+++|+.|++++|.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 9988 3 4588999999999999999977 567899999999999998 7888888755 679999999999998753
Q ss_pred cccCCCcccccccccccCc-c---ccC--cceEEccCcchh
Q 047700 408 EFEGKEGGAEASATFVFPK-V---ISN--LEELKLGGKDIT 442 (629)
Q Consensus 408 ~~~~~~~~~~~~~~~~~p~-~---l~~--L~~L~L~~~~~~ 442 (629)
+|. . ++. ++.|+|++|.+.
T Consensus 178 ----------------l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 ----------------LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ----------------CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ----------------cCHHHhhhccHhhcceEEecCCCcc
Confidence 221 1 222 467888888765
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=2.1e-12 Score=117.40 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=110.0
Q ss_pred ccccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-ccc-ccCcc
Q 047700 268 VLKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISI-IGNLE 345 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~-i~~l~ 345 (629)
...+++.|++.+|.+..+|..... .++|++|++++|.++.+ ..+..+++|++|++++|.+.. ++. ++.++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~-------~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGAT-------LDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGG-------TTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred CcCCceEEEeeCCCCchhHHhhhc-------CCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 467899999999999888653332 44999999999999988 568999999999999999998 444 48999
Q ss_pred ccceeeccCCCCccCch--hhhcCccccEEeecCCCCCCccChh---hhhcCccCceEEecccccc
Q 047700 346 KLENLSLVDSDIEWLPN--EIGELTQLRLLDLSSCWNLKVIPPN---VISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 346 ~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~---~i~~l~~L~~L~l~~~~~~ 406 (629)
+|++|++++|.++.+|. .++.+++|++|++++| .+..+|.. .+..+++|+.|++++|...
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999999999987 8899999999999998 55666753 4788999999998887643
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.33 E-value=1.1e-11 Score=112.89 Aligned_cols=125 Identities=28% Similarity=0.434 Sum_probs=105.8
Q ss_pred ceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccch-hhhcccCCcEEEcCCcCCCC-c-ccccCccccc
Q 047700 272 CSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQ-SVHLLSNLQTLCLDQCVLGD-I-SIIGNLEKLE 348 (629)
Q Consensus 272 l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~ 348 (629)
.+.+++.++.+..+|..+ .++|++|++++|.++.+|. .+..+++|++|++++|.+.. + ..++.+++|+
T Consensus 9 ~~~l~~~~~~l~~~p~~~---------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEEEecCCCCccCCCCC---------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccC
Confidence 357888888888888654 6789999999999997765 46889999999999999988 3 3478999999
Q ss_pred eeeccCCCCccCchh-hhcCccccEEeecCCCCCCccChhhhhcCccCceEEecccccc
Q 047700 349 NLSLVDSDIEWLPNE-IGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 349 ~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~ 406 (629)
+|++++|.++.+|.. ++++++|++|++++| .++.+|...+..+++|+.|++++|.+.
T Consensus 80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 999999999988865 588999999999998 677888776788999999999999764
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=9.9e-12 Score=114.63 Aligned_cols=125 Identities=22% Similarity=0.333 Sum_probs=104.2
Q ss_pred cEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cc--cccCccccceeeccCCCCccC-chhhhcCccccEEeecCC
Q 047700 303 RGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-IS--IIGNLEKLENLSLVDSDIEWL-PNEIGELTQLRLLDLSSC 378 (629)
Q Consensus 303 ~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~--~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~ 378 (629)
++++++++.++.+|..+.. +|++|++++|.+.. ++ .++.+++|++|++++|.++.+ |..++.+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 7899999999999986644 99999999999988 33 388999999999999999977 678999999999999998
Q ss_pred CCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchh
Q 047700 379 WNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDIT 442 (629)
Q Consensus 379 ~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~ 442 (629)
.+..++...+.++++|+.|++++|.+....+. ....+++|+.|++++|.+.
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 -KIKEISNKMFLGLHQLKTLNLYDNQISCVMPG------------SFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp -CCCEECSSSSTTCTTCCEEECCSSCCCEECTT------------SSTTCTTCCEEECTTCCBC
T ss_pred -cCCccCHHHhcCCCCCCEEECCCCcCCeeCHH------------HhhcCCCCCEEEeCCCCcc
Confidence 67777766688999999999999987653221 1223578888999888776
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=2.6e-11 Score=111.77 Aligned_cols=126 Identities=25% Similarity=0.294 Sum_probs=104.9
Q ss_pred cEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cccccCccccceeeccCCCCccCch-hhhcCccccEEeecCCCC
Q 047700 303 RGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLEKLENLSLVDSDIEWLPN-EIGELTQLRLLDLSSCWN 380 (629)
Q Consensus 303 ~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 380 (629)
++++++++.++.+|..+. .+|++|++++|.++. |..+..+++|++|++++|.++.++. .+.++++|++|++++| .
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-R 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-c
Confidence 689999999999997653 689999999999998 6789999999999999999998875 5889999999999998 6
Q ss_pred CCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchhh
Q 047700 381 LKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITM 443 (629)
Q Consensus 381 l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~ 443 (629)
+..++...+..+++|+.|++++|.+....++ .-..+++|+.|++++|.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEG------------AFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTT------------TTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChh------------hhhcCccccEEEeCCCCeec
Confidence 7777776699999999999999987642211 11235788899998887753
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=7.2e-12 Score=139.53 Aligned_cols=107 Identities=22% Similarity=0.286 Sum_probs=78.7
Q ss_pred cCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cccccCccccceeeccCCCCccCchhhhcCccccEEeecC
Q 047700 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSS 377 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 377 (629)
++.|++|+|++|.+..+|..+..+++|++|+|++|.++. |+.++++++|++|+|++|.++.+|..+++|++|++|++++
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS
T ss_pred CCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC
Confidence 667777777777777777777777777777777777776 5567777777777777777777777777777777777777
Q ss_pred CCCCCccChhhhhcCccCceEEeccccccc
Q 047700 378 CWNLKVIPPNVISKLTQLEELYMGNTFVKW 407 (629)
Q Consensus 378 ~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~ 407 (629)
| .++.+|.. ++++++|+.|++++|.+..
T Consensus 303 N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 303 N-MVTTLPWE-FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp S-CCCCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred C-CCCccChh-hhcCCCccEEeCCCCccCC
Confidence 6 56677766 7777777777777776654
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=1.7e-11 Score=132.21 Aligned_cols=103 Identities=21% Similarity=0.179 Sum_probs=67.0
Q ss_pred CccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cccccCccccceeeccCCCCccCchhhhcCccccEEeecCCC
Q 047700 301 KLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCW 379 (629)
Q Consensus 301 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 379 (629)
.|++|++++|.++.+|. ++.+++|++|++++|.++. |..++.+++|++|++++|.++.+| .++++++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N- 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN- 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-
Confidence 46666666666666665 6666666666666666666 556666666667777666666666 5666666777776666
Q ss_pred CCCcc--ChhhhhcCccCceEEeccccccc
Q 047700 380 NLKVI--PPNVISKLTQLEELYMGNTFVKW 407 (629)
Q Consensus 380 ~l~~~--p~~~i~~l~~L~~L~l~~~~~~~ 407 (629)
.+..+ |.. ++.+++|+.|++++|.+..
T Consensus 519 ~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 519 RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CCCSSSTTGG-GGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCCcHH-HhcCCCCCEEEecCCcCCC
Confidence 44444 443 6666677777766666543
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=2.4e-11 Score=131.11 Aligned_cols=148 Identities=20% Similarity=0.218 Sum_probs=113.1
Q ss_pred cCCccEEE-ecCCcccccch------hhhc--ccCCcEEEcCCcCCCCcccccCccccceeeccCCCCccCchhhhcCcc
Q 047700 299 MSKLRGLA-LSKMQLLSLPQ------SVHL--LSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQ 369 (629)
Q Consensus 299 ~~~L~~L~-l~~~~~~~lp~------~l~~--l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~ 369 (629)
+++|+.|+ ++.|.+..++. .+.. ...|++|++++|.++.++.++.+++|++|++++|.++.+|..++++++
T Consensus 408 l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 487 (567)
T 1dce_A 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRC 487 (567)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTT
T ss_pred HHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCC
Confidence 67788887 56555443332 1222 136999999999999966699999999999999999999999999999
Q ss_pred ccEEeecCCCCCCccChhhhhcCccCceEEeccccccccc-cCCCcccccccccccCccccCcceEEccCcchhhhcccc
Q 047700 370 LRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEF-EGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDH 448 (629)
Q Consensus 370 L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~ 448 (629)
|++|++++| .++.+| . ++++++|+.|++++|.+.... +. ....+++|+.|+|++|.++..+...
T Consensus 488 L~~L~Ls~N-~l~~lp-~-l~~l~~L~~L~Ls~N~l~~~~~p~------------~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 488 LEVLQASDN-ALENVD-G-VANLPRLQELLLCNNRLQQSAAIQ------------PLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CCEEECCSS-CCCCCG-G-GTTCSSCCEEECCSSCCCSSSTTG------------GGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCEEECCCC-CCCCCc-c-cCCCCCCcEEECCCCCCCCCCCcH------------HHhcCCCCCEEEecCCcCCCCccHH
Confidence 999999998 677788 4 999999999999999876431 11 1123578999999999998775432
Q ss_pred CC-hhhhcccceee
Q 047700 449 LP-KHLFQNLKSLE 461 (629)
Q Consensus 449 ~~-~~~~~~L~~L~ 461 (629)
.. ...+++|+.|.
T Consensus 553 ~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 553 ERLAEMLPSVSSIL 566 (567)
T ss_dssp THHHHHCTTCSEEE
T ss_pred HHHHHHCcccCccC
Confidence 11 23467888774
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=3.2e-11 Score=134.27 Aligned_cols=154 Identities=21% Similarity=0.178 Sum_probs=94.5
Q ss_pred cccceEEeccCCCCCCCCCCCCCCCcchhccC--CccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cccccCcc
Q 047700 269 LKNCSAVSLNDIEIGVLPKGLEYPQLEFFWMS--KLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLE 345 (629)
Q Consensus 269 ~~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~--~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~ 345 (629)
...++.|.+.++.+...+.... +.+.++ .+..+++..|.+...|..+..+.+|++|+|++|.+.. ++.+.+++
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l----~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~ 247 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALL----QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYD 247 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCC
T ss_pred CCccceEEeeCCCCCcchhhHh----hcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCC
Confidence 3468888888888777654321 111111 2333444555555567788999999999999999998 67888999
Q ss_pred ccceeeccCCCCccCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccC
Q 047700 346 KLENLSLVDSDIEWLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFP 425 (629)
Q Consensus 346 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p 425 (629)
+|++|+|++|.++.+|..+++|++|++|++++| .+..+|.. ++++++|++|++++|.+.. +|
T Consensus 248 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~----------------lp 309 (727)
T 4b8c_D 248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGSCFQLKYFYFFDNMVTT----------------LP 309 (727)
T ss_dssp SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGGGTTCSEEECCSSCCCC----------------CC
T ss_pred CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcCCCCCCEEECCCCCCCc----------------cC
Confidence 999999999999999999999999999999998 67788887 8999999999999997652 44
Q ss_pred cc---ccCcceEEccCcchhhh
Q 047700 426 KV---ISNLEELKLGGKDITMI 444 (629)
Q Consensus 426 ~~---l~~L~~L~L~~~~~~~~ 444 (629)
.. +.+|+.|+|++|.++..
T Consensus 310 ~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 310 WEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp SSTTSCTTCCCEECTTSCCCSH
T ss_pred hhhhcCCCccEEeCCCCccCCC
Confidence 43 47899999999988744
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.17 E-value=1.8e-10 Score=104.67 Aligned_cols=127 Identities=27% Similarity=0.359 Sum_probs=102.9
Q ss_pred CccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-c-ccccCccccceeeccCCCCccCchh-hhcCccccEEeecC
Q 047700 301 KLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-I-SIIGNLEKLENLSLVDSDIEWLPNE-IGELTQLRLLDLSS 377 (629)
Q Consensus 301 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~ 377 (629)
..+.+++++++++.+|..+ ..+|++|++++|.+.. + ..++.+++|++|++++|+++.+|.. ++.+++|++|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3578999999999998654 4799999999999988 3 3478999999999999999988865 58999999999999
Q ss_pred CCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchh
Q 047700 378 CWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDIT 442 (629)
Q Consensus 378 ~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~ 442 (629)
| .++.+|...+..+++|+.|++++|.+....+. .-..+.+|+.|++++|.+.
T Consensus 86 N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~------------~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 N-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDG------------IFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT------------TTTTCTTCCEEECCSSCBC
T ss_pred C-CccccCHHHhhCCcccCEEECcCCcceEeCHH------------HhcCCcccCEEEecCCCee
Confidence 8 67777776678999999999999987532110 1123577888888888765
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=2.2e-12 Score=119.79 Aligned_cols=105 Identities=23% Similarity=0.311 Sum_probs=62.4
Q ss_pred cCCccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC-cccccCccccceeeccCCCCccCchhhhcCccccEEeecC
Q 047700 299 MSKLRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD-ISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSS 377 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 377 (629)
+++|++|++++|.++.+| .+..+++|++|++++|.+.. |..++.+++|++|++++|.++.+| .++.+++|++|++++
T Consensus 47 l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSN 124 (198)
T ss_dssp TTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESE
T ss_pred CCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCC
Confidence 566666666666666665 56666666666666666655 334445566666666666666655 455666666666666
Q ss_pred CCCCCccCh-hhhhcCccCceEEecccccc
Q 047700 378 CWNLKVIPP-NVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 378 ~~~l~~~p~-~~i~~l~~L~~L~l~~~~~~ 406 (629)
| .+..++. ..+..+++|+.|++++|.+.
T Consensus 125 N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 125 N-KITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp E-ECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred C-cCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 5 3444332 22556666666666666543
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=1.2e-10 Score=105.41 Aligned_cols=97 Identities=25% Similarity=0.361 Sum_probs=47.7
Q ss_pred eEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEcCCcCCCC-ccc-ccCccccce
Q 047700 273 SAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQCVLGD-ISI-IGNLEKLEN 349 (629)
Q Consensus 273 ~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~-~~~-i~~l~~L~~ 349 (629)
+.++++++.+..+|..+ .++|++|++++|.++.+ |..+..+++|++|+|++|.+.. |+. +.++++|++
T Consensus 15 ~~l~~~~n~l~~iP~~~---------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECCSSCCSSCCSCC---------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cEEEeCCCCCCccCCCc---------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence 34555555555555433 34555555555555544 3344555555555555555544 222 344555555
Q ss_pred eeccCCCCccCchh-hhcCccccEEeecCC
Q 047700 350 LSLVDSDIEWLPNE-IGELTQLRLLDLSSC 378 (629)
Q Consensus 350 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 378 (629)
|++++|+++.+|.. +..+++|++|++++|
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred EECCCCccceeCHHHhccccCCCEEEeCCC
Confidence 55555555544443 444455555555444
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=1.3e-10 Score=104.76 Aligned_cols=100 Identities=26% Similarity=0.362 Sum_probs=44.5
Q ss_pred cEEEecCCcccccchhhhcccCCcEEEcCCcCCCC--cccccCccccceeeccCCCCccCchh-hhcCccccEEeecCCC
Q 047700 303 RGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD--ISIIGNLEKLENLSLVDSDIEWLPNE-IGELTQLRLLDLSSCW 379 (629)
Q Consensus 303 ~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 379 (629)
++++++++.++.+|..+ ..+|++|++++|.+.. +..++.+++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N- 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN- 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-
Confidence 34444444444444333 1344444444444444 22344444444444444444444433 244445555555444
Q ss_pred CCCccChhhhhcCccCceEEeccccc
Q 047700 380 NLKVIPPNVISKLTQLEELYMGNTFV 405 (629)
Q Consensus 380 ~l~~~p~~~i~~l~~L~~L~l~~~~~ 405 (629)
.+..+|...+.++++|+.|++++|.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 34444443344455555555555443
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=8e-12 Score=115.94 Aligned_cols=131 Identities=24% Similarity=0.224 Sum_probs=105.8
Q ss_pred CCccEEEecCC--cccccchhhhcccCCcEEEcCCcCCCCcccccCccccceeeccCCCCccCchhhhcCccccEEeecC
Q 047700 300 SKLRGLALSKM--QLLSLPQSVHLLSNLQTLCLDQCVLGDISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSS 377 (629)
Q Consensus 300 ~~L~~L~l~~~--~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 377 (629)
-.|+.+.+.++ .++.+|..+..+++|++|++++|.+..++.++++++|++|++++|.++.+|..+..+++|++|++++
T Consensus 23 l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred cchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 34555666655 5667787999999999999999999996699999999999999999999999888899999999999
Q ss_pred CCCCCccChhhhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchhhh
Q 047700 378 CWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMI 444 (629)
Q Consensus 378 ~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~ 444 (629)
| .+..+|. ++.+++|+.|++++|.+..... . .....+++|+.|++++|.+...
T Consensus 103 N-~l~~l~~--~~~l~~L~~L~l~~N~i~~~~~----------~-~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 103 N-QIASLSG--IEKLVNLRVLYMSNNKITNWGE----------I-DKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp E-ECCCHHH--HHHHHHSSEEEESEEECCCHHH----------H-HHHTTTTTCSEEEECSCHHHHH
T ss_pred C-cCCcCCc--cccCCCCCEEECCCCcCCchhH----------H-HHHhcCCCCCEEEecCCccccc
Confidence 8 6777763 8999999999999998753111 0 0112357889999998888654
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.10 E-value=3.5e-10 Score=101.88 Aligned_cols=100 Identities=24% Similarity=0.292 Sum_probs=88.8
Q ss_pred ceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCccccc-chhhhcccCCcEEEcCCcCCCC-cc-cccCccccc
Q 047700 272 CSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQCVLGD-IS-IIGNLEKLE 348 (629)
Q Consensus 272 l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~-~~-~i~~l~~L~ 348 (629)
.+.++++++.+..+|..+ .++|++|++++|.++.+ |..+..+++|++|++++|.++. ++ .+..+++|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~---------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEEEeCCCCcCccCccC---------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence 468899999999999765 57899999999999987 5678999999999999999999 43 468999999
Q ss_pred eeeccCCCCccCchh-hhcCccccEEeecCCCC
Q 047700 349 NLSLVDSDIEWLPNE-IGELTQLRLLDLSSCWN 380 (629)
Q Consensus 349 ~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~ 380 (629)
+|++++|+++.+|.. +.++++|++|++++|..
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 999999999999875 88999999999999843
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=3.7e-10 Score=102.02 Aligned_cols=103 Identities=24% Similarity=0.384 Sum_probs=92.2
Q ss_pred ccEEEecCCcccccchhhhcccCCcEEEcCCcCCCC--cccccCccccceeeccCCCCccCchhh-hcCccccEEeecCC
Q 047700 302 LRGLALSKMQLLSLPQSVHLLSNLQTLCLDQCVLGD--ISIIGNLEKLENLSLVDSDIEWLPNEI-GELTQLRLLDLSSC 378 (629)
Q Consensus 302 L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~ 378 (629)
-+.++++++.+..+|..+. .+|++|++++|.+.. +..++++++|++|++++|+++.+|..+ .++++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4789999999999998764 899999999999998 456899999999999999999998764 89999999999998
Q ss_pred CCCCccChhhhhcCccCceEEeccccccc
Q 047700 379 WNLKVIPPNVISKLTQLEELYMGNTFVKW 407 (629)
Q Consensus 379 ~~l~~~p~~~i~~l~~L~~L~l~~~~~~~ 407 (629)
.+..+|...+..+++|+.|++++|.+..
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred -ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7788888768999999999999998753
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=5.6e-09 Score=105.00 Aligned_cols=250 Identities=13% Similarity=0.043 Sum_probs=134.5
Q ss_pred cCCccEEEecCCccc--ccchhhhcccCCcEEEcCCcCCCCcccccC--------ccccceeeccCCCCccCch-hhhcC
Q 047700 299 MSKLRGLALSKMQLL--SLPQSVHLLSNLQTLCLDQCVLGDISIIGN--------LEKLENLSLVDSDIEWLPN-EIGEL 367 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~l~~~~~i~~--------l~~L~~L~l~~~~l~~lp~-~i~~l 367 (629)
+++|++|||++|++. ..+. +.++.++++.+..+.+.. ..|.+ +++|+.|++.. +++.++. .+..+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~--~~~~~~~~~~~~~~~I~~-~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKA--GTYPNGKFYIYMANFVPA-YAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESS--SSSGGGCCEEECTTEECT-TTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCcc--ccccccccccccccccCH-HHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence 567788888888776 2221 222334555555443221 23455 88888888888 7887765 46788
Q ss_pred ccccEEeecCCCCCCccChhhhhcCccCceEEeccccccccccCCCcccccc-----------cccccCc-------ccc
Q 047700 368 TQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFVKWEFEGKEGGAEAS-----------ATFVFPK-------VIS 429 (629)
Q Consensus 368 ~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-----------~~~~~p~-------~l~ 429 (629)
++|+.|+++.+ .+..++..++....++..+..................+.. ....++. ...
T Consensus 124 ~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 124 DNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp TTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred cccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 88888888886 5556776667776666666544321100000000000000 0000000 012
Q ss_pred CcceEEccCcchhhhccccCChhhhcccceeeeccCCCCceeeccccccCchhhhhhccccCceeeeEEEecCCCCcccc
Q 047700 430 NLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDKSDNFSIGSLQRFHNMEKLELRQFIQRDIFKWRVSYCKRLKNLV 509 (629)
Q Consensus 430 ~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~L~~~~L~l~~c~~l~~l~ 509 (629)
+++.+.+.++-..... ..+ ...+++|+++++.++......... ...+++|+. |.+.+. ++.++
T Consensus 203 ~~~~l~~~~~l~~~~~-~~l-~~~~~~L~~l~L~~n~i~~I~~~a-----------F~~~~~L~~--l~l~~n--i~~I~ 265 (329)
T 3sb4_A 203 DINFLTIEGKLDNADF-KLI-RDYMPNLVSLDISKTNATTIPDFT-----------FAQKKYLLK--IKLPHN--LKTIG 265 (329)
T ss_dssp GCSEEEEEECCCHHHH-HHH-HHHCTTCCEEECTTBCCCEECTTT-----------TTTCTTCCE--EECCTT--CCEEC
T ss_pred ccceEEEeeeecHHHH-HHH-HHhcCCCeEEECCCCCcceecHhh-----------hhCCCCCCE--EECCcc--cceeh
Confidence 2333333221100000 000 013578888888865433322222 445667777 777662 66664
Q ss_pred chHHHhcccCcc-eEEEecccccceeccccccccccccccccccccccccccccceeccCCCeeecCCCceee
Q 047700 510 SSFTAKSLVHLM-KLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNCTFKFPSLEDLF 581 (629)
Q Consensus 510 ~~~~l~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~p~L~~L~ 581 (629)
. ..+.+|++|+ .+.+.+ .++.+...... .+++|+.|.+.. .+++.++.. ....+++|+.|.
T Consensus 266 ~-~aF~~~~~L~~~l~l~~--~l~~I~~~aF~------~c~~L~~l~l~~-n~i~~I~~~-aF~~~~~L~~ly 327 (329)
T 3sb4_A 266 Q-RVFSNCGRLAGTLELPA--SVTAIEFGAFM------GCDNLRYVLATG-DKITTLGDE-LFGNGVPSKLIY 327 (329)
T ss_dssp T-TTTTTCTTCCEEEEECT--TCCEECTTTTT------TCTTEEEEEECS-SCCCEECTT-TTCTTCCCCEEE
T ss_pred H-HHhhCChhccEEEEEcc--cceEEchhhhh------CCccCCEEEeCC-CccCccchh-hhcCCcchhhhc
Confidence 4 5578888998 999976 46666543322 578888888765 567777542 334566777664
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=1.6e-08 Score=102.45 Aligned_cols=97 Identities=20% Similarity=0.130 Sum_probs=61.1
Q ss_pred EEeccCC-CCCCCCCCCCCCCcchhccCCccEEEecC-Ccccccc-hhhhcccCCcEEEcCCcCCCC--cccccCccccc
Q 047700 274 AVSLNDI-EIGVLPKGLEYPQLEFFWMSKLRGLALSK-MQLLSLP-QSVHLLSNLQTLCLDQCVLGD--ISIIGNLEKLE 348 (629)
Q Consensus 274 ~L~l~~~-~~~~lp~~~~~~~l~~l~~~~L~~L~l~~-~~~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~ 348 (629)
.++..++ .+..+|. +.. +++|++|+|++ |.+..+| ..|..+.+|++|+|++|.+.. +..|+++++|+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~-------~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPG-------AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp CEECCSSCCCTTTTT-SCS-------CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred EEEcCCCCCCCccCC-CCC-------CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 3455655 5666666 433 56677777775 6776665 346667777777777777666 23456677777
Q ss_pred eeeccCCCCccCchhhhcCccccEEeecCC
Q 047700 349 NLSLVDSDIEWLPNEIGELTQLRLLDLSSC 378 (629)
Q Consensus 349 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 378 (629)
+|+|++|+++.+|..+.....|+.|++.+|
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred EEeCCCCccceeCHHHcccCCceEEEeeCC
Confidence 777777777766655433333777777665
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=7.7e-08 Score=96.65 Aligned_cols=237 Identities=9% Similarity=-0.015 Sum_probs=137.2
Q ss_pred cccceEEeccCCCCC--CCCCCCCCCCcchhccCCccEEEecCCcccccchhhhc--------ccCCcEEEcCCcCCCCc
Q 047700 269 LKNCSAVSLNDIEIG--VLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQSVHL--------LSNLQTLCLDQCVLGDI 338 (629)
Q Consensus 269 ~~~l~~L~l~~~~~~--~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~l~~--------l~~L~~L~l~~~~l~~~ 338 (629)
+++++.|++++|.+. ..+... ++.++.+.+..+.+. +..|.. |.+|+.|++.. .++.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~---------~~~~~~~~~~~~~I~--~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I 115 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT---------YPNGKFYIYMANFVP--AYAFSNVVNGVTKGKQTLEKVILSE-KIKNI 115 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS---------SGGGCCEEECTTEEC--TTTTEEEETTEEEECTTCCC-CBCT-TCCEE
T ss_pred hccCeEEecCcceeEEecCcccc---------ccccccccccccccC--HHHhcccccccccccCCCcEEECCc-cccch
Confidence 678999999999887 222211 223444555544322 123445 77788888777 66663
Q ss_pred --ccccCccccceeeccCCCCccCch-hhhcCccccEEeecCCC---CCCccChhhhhcCc-------------------
Q 047700 339 --SIIGNLEKLENLSLVDSDIEWLPN-EIGELTQLRLLDLSSCW---NLKVIPPNVISKLT------------------- 393 (629)
Q Consensus 339 --~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~---~l~~~p~~~i~~l~------------------- 393 (629)
..|..|++|+.++++.+.+..++. .+..+.++..+...... ....+....+..+.
T Consensus 116 ~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~ 195 (329)
T 3sb4_A 116 EDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIM 195 (329)
T ss_dssp CTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHH
T ss_pred hHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHh
Confidence 457777788888887777765554 33444555555443310 11111111122233
Q ss_pred -------cCceEEeccccccccccCCCcccccccccccCccccCcceEEccCcchhhhccccCChhhhcccceeeeccCC
Q 047700 394 -------QLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGKDITMICQDHLPKHLFQNLKSLEVVSDK 466 (629)
Q Consensus 394 -------~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 466 (629)
++..+.+.++-... ....+...+.+|+.++++.|.+..+....+ ..+++|+++.+...
T Consensus 196 ~~~~~~~~~~~l~~~~~l~~~------------~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF--~~~~~L~~l~l~~n- 260 (329)
T 3sb4_A 196 KAGLQPRDINFLTIEGKLDNA------------DFKLIRDYMPNLVSLDISKTNATTIPDFTF--AQKKYLLKIKLPHN- 260 (329)
T ss_dssp HTTCCGGGCSEEEEEECCCHH------------HHHHHHHHCTTCCEEECTTBCCCEECTTTT--TTCTTCCEEECCTT-
T ss_pred hcccCccccceEEEeeeecHH------------HHHHHHHhcCCCeEEECCCCCcceecHhhh--hCCCCCCEEECCcc-
Confidence 33333333321100 011122336889999999988886655444 46778899988764
Q ss_pred CCceeeccccccCchhhhhhccccCce-eeeEEEecCCCCccccchHHHhcccCcceEEEecccccceeccccccccccc
Q 047700 467 SDNFSIGSLQRFHNMEKLELRQFIQRD-IFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDE 545 (629)
Q Consensus 467 ~~~~~~~~~~~~~~L~~L~~~~~~~L~-~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 545 (629)
....+... ...+++|+ . +.+.. .++.++. ..+.+|++|+.|.+.++. +..++.....
T Consensus 261 -i~~I~~~a----------F~~~~~L~~~--l~l~~--~l~~I~~-~aF~~c~~L~~l~l~~n~-i~~I~~~aF~----- 318 (329)
T 3sb4_A 261 -LKTIGQRV----------FSNCGRLAGT--LELPA--SVTAIEF-GAFMGCDNLRYVLATGDK-ITTLGDELFG----- 318 (329)
T ss_dssp -CCEECTTT----------TTTCTTCCEE--EEECT--TCCEECT-TTTTTCTTEEEEEECSSC-CCEECTTTTC-----
T ss_pred -cceehHHH----------hhCChhccEE--EEEcc--cceEEch-hhhhCCccCCEEEeCCCc-cCccchhhhc-----
Confidence 33332211 45667787 8 88876 6666644 567899999999997765 6666553322
Q ss_pred cccccccccc
Q 047700 546 VVFSRLKWLS 555 (629)
Q Consensus 546 ~~~~~L~~L~ 555 (629)
.+++|+.+.
T Consensus 319 -~~~~L~~ly 327 (329)
T 3sb4_A 319 -NGVPSKLIY 327 (329)
T ss_dssp -TTCCCCEEE
T ss_pred -CCcchhhhc
Confidence 477777765
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.67 E-value=4.5e-08 Score=99.21 Aligned_cols=100 Identities=24% Similarity=0.298 Sum_probs=86.3
Q ss_pred EEEecCC-cccccchhhhcccCCcEEEcCC-cCCCC-c-ccccCccccceeeccCCCCccCch-hhhcCccccEEeecCC
Q 047700 304 GLALSKM-QLLSLPQSVHLLSNLQTLCLDQ-CVLGD-I-SIIGNLEKLENLSLVDSDIEWLPN-EIGELTQLRLLDLSSC 378 (629)
Q Consensus 304 ~L~l~~~-~~~~lp~~l~~l~~L~~L~l~~-~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 378 (629)
.++++++ .++.+|. +..+.+|++|+|++ |.+.. + ..|+.+++|++|+|++|+++.+|. .+++|++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4588888 8999999 99999999999996 99988 3 569999999999999999997765 6789999999999998
Q ss_pred CCCCccChhhhhcCccCceEEecccccc
Q 047700 379 WNLKVIPPNVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 379 ~~l~~~p~~~i~~l~~L~~L~l~~~~~~ 406 (629)
.+..+|...+..++ |+.|++.+|.+.
T Consensus 91 -~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 -ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp -CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred -ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 77888877555555 999999999865
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.67 E-value=4.5e-07 Score=93.25 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=74.5
Q ss_pred CccEEEecCCcccccch-hhhcccCCcEEEcCCcCCCC--cccccCccccceeeccCCCCccCchhhhcCccccEEeecC
Q 047700 301 KLRGLALSKMQLLSLPQ-SVHLLSNLQTLCLDQCVLGD--ISIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDLSS 377 (629)
Q Consensus 301 ~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 377 (629)
+|+.+++..+ ++.++. .|.+ .+|+.+.+.. .+.. ...|..|++|+.+++..++++.+|...-...+|+.+.+..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence 6888888765 666653 3444 4788888886 5555 3568888999999999888888887665578899998875
Q ss_pred CCCCCccChhhhhcCccCceEEeccc
Q 047700 378 CWNLKVIPPNVISKLTQLEELYMGNT 403 (629)
Q Consensus 378 ~~~l~~~p~~~i~~l~~L~~L~l~~~ 403 (629)
.+..++..++.++++|+.+.+..+
T Consensus 213 --~l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 213 --TLKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp --TCCEECTTTTTTCTTCCCEECCTT
T ss_pred --chheehhhHhhCCCCCCEEecCCC
Confidence 477888877888889998887654
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.62 E-value=7.2e-09 Score=105.65 Aligned_cols=160 Identities=17% Similarity=0.143 Sum_probs=102.3
Q ss_pred ccccceEEeccCCCCCCCCCCCCCCCcchh---ccCCccEEEecCCcccc--cchhhhcccCCcEEEcCCcCCCC--ccc
Q 047700 268 VLKNCSAVSLNDIEIGVLPKGLEYPQLEFF---WMSKLRGLALSKMQLLS--LPQSVHLLSNLQTLCLDQCVLGD--ISI 340 (629)
Q Consensus 268 ~~~~l~~L~l~~~~~~~lp~~~~~~~l~~l---~~~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~l~~--~~~ 340 (629)
..+.++.|++++|.+....... +... ..++|++|+|++|.+.. +......+.+|++|+|++|.++. +..
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~----l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTV----VAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHH----HHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHH----HHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 3457888888888765422110 0000 03688999999998862 23333456788999999998876 233
Q ss_pred c-----cCccccceeeccCCCCcc-----CchhhhcCccccEEeecCCCCCCccC----hhhhhcCccCceEEecccccc
Q 047700 341 I-----GNLEKLENLSLVDSDIEW-----LPNEIGELTQLRLLDLSSCWNLKVIP----PNVISKLTQLEELYMGNTFVK 406 (629)
Q Consensus 341 i-----~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~~p----~~~i~~l~~L~~L~l~~~~~~ 406 (629)
+ ...++|++|++++|.++. ++..+..+++|++|++++| .++... ...+...++|+.|++++|.+.
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 3 245779999999988763 4555677888999999887 444322 122566778888888888764
Q ss_pred ccccCCCcccccccccccCc---cccCcceEEccCcchhh
Q 047700 407 WEFEGKEGGAEASATFVFPK---VISNLEELKLGGKDITM 443 (629)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~p~---~l~~L~~L~L~~~~~~~ 443 (629)
.... ..++. ..++|+.|+|++|.+.+
T Consensus 225 ~~g~-----------~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 225 DTAA-----------LALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHH-----------HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHH-----------HHHHHHHHhCCCCCEEeccCCCCCH
Confidence 3211 01222 23667788888777764
No 149
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.53 E-value=1.2e-07 Score=98.44 Aligned_cols=114 Identities=24% Similarity=0.289 Sum_probs=76.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHhhhc---CCCC-eEEEEEeCCCcCHHHHHHHHHHHhCCccc--CCCHHHHHHHHHHHHc-
Q 047700 3 GVYGIGGIGKTTLMHEVLFEAKKE---KLFD-QVVFVLKSSTANVEKIQDEIAEQLGLELC--KGTESERARTLFDQLW- 75 (629)
Q Consensus 3 ~i~G~gG~GKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~l~~~l~- 75 (629)
+|+|++|+||||||+.+++..... ..|. .++|+.+....+...+++.|+..++.... ..+..+....+.+.+.
T Consensus 56 ~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 135 (412)
T 1w5s_A 56 GSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYV 135 (412)
T ss_dssp ECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHH
T ss_pred eCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 449999999999999999886542 1233 35788877777899999999999976532 2234455666666665
Q ss_pred -CCcEEEEEcCCCCCc--------chhhhhhccCC-C--C--CCcEEEEeecccc
Q 047700 76 -KEKILIILDDIWANI--------DLETVGILFGG-A--H--RGCKILLTPRYQN 116 (629)
Q Consensus 76 -~k~~LlVlDdv~~~~--------~~~~l~~~~~~-~--~--~gs~ilvTTR~~~ 116 (629)
+++++|||||+|... .+..+...+.. . + ....||+||+...
T Consensus 136 ~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~ 190 (412)
T 1w5s_A 136 ENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVR 190 (412)
T ss_dssp HTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETH
T ss_pred cCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEecccc
Confidence 789999999997632 12222222211 1 2 3456888887655
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.49 E-value=3e-08 Score=101.09 Aligned_cols=136 Identities=18% Similarity=0.119 Sum_probs=86.9
Q ss_pred cCCccEEEecCCccccc-chhhhcc-----cCCcEEEcCCcCCCC--cccc-cCccccceeeccCCCCccCc-----hhh
Q 047700 299 MSKLRGLALSKMQLLSL-PQSVHLL-----SNLQTLCLDQCVLGD--ISII-GNLEKLENLSLVDSDIEWLP-----NEI 364 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~l-p~~l~~l-----~~L~~L~l~~~~l~~--~~~i-~~l~~L~~L~l~~~~l~~lp-----~~i 364 (629)
+++|++|++++|.++.. ...+..+ .+|++|+|++|.+.. +..+ ..+++|++|++++|.++... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 77899999999998732 2223322 689999999998876 3333 35678999999999887322 222
Q ss_pred -hcCccccEEeecCCCCCCccChh----hhhcCccCceEEeccccccccccCCCcccccccccccCccccCcceEEccCc
Q 047700 365 -GELTQLRLLDLSSCWNLKVIPPN----VISKLTQLEELYMGNTFVKWEFEGKEGGAEASATFVFPKVISNLEELKLGGK 439 (629)
Q Consensus 365 -~~l~~L~~L~l~~~~~l~~~p~~----~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~L~~L~L~~~ 439 (629)
...++|++|++++| .++..... .+...++|++|++++|.+....... +........+|+.|+|++|
T Consensus 151 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~--------L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 151 LHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLEL--------LAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHH--------HHHHGGGCSCCCEEECCSS
T ss_pred HhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHH--------HHHHHhcCCCcCeEECCCC
Confidence 24678999999998 45432211 1467788999999888764311000 0001112346777777777
Q ss_pred chhh
Q 047700 440 DITM 443 (629)
Q Consensus 440 ~~~~ 443 (629)
.+.+
T Consensus 222 ~i~~ 225 (372)
T 3un9_A 222 GAGD 225 (372)
T ss_dssp CCCH
T ss_pred CCCH
Confidence 6654
No 151
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.40 E-value=4.6e-07 Score=93.08 Aligned_cols=115 Identities=13% Similarity=0.103 Sum_probs=78.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcC----C--CCeEEEEEeCCCc-CHHHHHHHHHHHhC-Ccc--cCCCHHHHHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEK----L--FDQVVFVLKSSTA-NVEKIQDEIAEQLG-LEL--CKGTESERARTLF 71 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~----~--F~~~~wv~vs~~~-~~~~~~~~i~~~l~-~~~--~~~~~~~~~~~l~ 71 (629)
+.|+|++|+||||||+.+++...... . ....+|++++... +...+...++.++. ... ......+....+.
T Consensus 48 vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 127 (384)
T 2qby_B 48 NLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIK 127 (384)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Confidence 67999999999999999998864321 1 3456788887766 88888889888883 221 1223455667788
Q ss_pred HHHcCCcEEEEEcCCCCCcc--hhhh-hhccCCCCCCcEEEEeecccc
Q 047700 72 DQLWKEKILIILDDIWANID--LETV-GILFGGAHRGCKILLTPRYQN 116 (629)
Q Consensus 72 ~~l~~k~~LlVlDdv~~~~~--~~~l-~~~~~~~~~gs~ilvTTR~~~ 116 (629)
+.+..++.+|||||++.... +... ...+.....+..||+||+...
T Consensus 128 ~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 128 NGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT
T ss_pred HHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCc
Confidence 88887777999999975421 1222 222222116788999998764
No 152
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.30 E-value=2.4e-06 Score=87.65 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=77.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc----CCCCeEEEEEeCCCcCHHHHHHHHHHHhCCccc--CCCHHHHHHHHHHHHc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE----KLFDQVVFVLKSSTANVEKIQDEIAEQLGLELC--KGTESERARTLFDQLW 75 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~l~~~l~ 75 (629)
+.|+|++|+||||+|+.+++..... +.-...+|+++....+...+...++..++.... .....+....+.+.+.
T Consensus 47 vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~ 126 (387)
T 2v1u_A 47 ALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS 126 (387)
T ss_dssp EEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh
Confidence 6799999999999999999886432 111245688888888899999999999976432 2234555667777774
Q ss_pred --CCcEEEEEcCCCCCcc----hhhhhhccC---CC--CCCcEEEEeecccc
Q 047700 76 --KEKILIILDDIWANID----LETVGILFG---GA--HRGCKILLTPRYQN 116 (629)
Q Consensus 76 --~k~~LlVlDdv~~~~~----~~~l~~~~~---~~--~~gs~ilvTTR~~~ 116 (629)
+++.+|||||++.... .+.+...+. .. ..+..+|.||+...
T Consensus 127 ~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 127 RLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp TSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred ccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 5689999999976421 122222111 11 34567888887763
No 153
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.29 E-value=1.3e-06 Score=89.71 Aligned_cols=117 Identities=20% Similarity=0.201 Sum_probs=76.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCC-CCeEEEEEeCCCcCHHHHHHHHHHHhCCccc--CCCHHHHHHHHHHHHc--
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKL-FDQVVFVLKSSTANVEKIQDEIAEQLGLELC--KGTESERARTLFDQLW-- 75 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~l~~~l~-- 75 (629)
.+.|+|++|+||||||+.+++....... -..++|+++....+...+...++..++.... .....+....+.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 126 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDY 126 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 3789999999999999999998754411 2356788877666778888888887765422 2234455566666665
Q ss_pred CCcEEEEEcCCCCC------cchhhhhhccCC-CCCCcEEEEeeccccc
Q 047700 76 KEKILIILDDIWAN------IDLETVGILFGG-AHRGCKILLTPRYQNV 117 (629)
Q Consensus 76 ~k~~LlVlDdv~~~------~~~~~l~~~~~~-~~~gs~ilvTTR~~~v 117 (629)
+++.+||||+++.. +.+..+...+.. ...+..+|+||++...
T Consensus 127 ~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 127 GSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp CSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred CCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 45899999999753 222233222211 2345677888887653
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.27 E-value=2.1e-05 Score=80.79 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=72.3
Q ss_pred CCccEEEecCCcccccc-hhhhcccCCcEEEcCCcCCCC-cccccCccccceeeccCCCCccCch-hhhcCccccEEeec
Q 047700 300 SKLRGLALSKMQLLSLP-QSVHLLSNLQTLCLDQCVLGD-ISIIGNLEKLENLSLVDSDIEWLPN-EIGELTQLRLLDLS 376 (629)
Q Consensus 300 ~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~ 376 (629)
.+|+.+.+.. .++.++ ..|..|.+|+.+++..+.++. +.....+.+|+.+.+.. +++.++. .+.++++|+.+.+.
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECC
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecC
Confidence 3588888875 566554 467888999999999888887 33333368899999885 4776654 46788899999988
Q ss_pred CCCCCCccChhhhhcCccCceEEecc
Q 047700 377 SCWNLKVIPPNVISKLTQLEELYMGN 402 (629)
Q Consensus 377 ~~~~l~~~p~~~i~~l~~L~~L~l~~ 402 (629)
. .+..++..++.+ .+|+.+.+..
T Consensus 235 ~--~l~~I~~~aF~~-~~L~~i~lp~ 257 (401)
T 4fdw_A 235 E--NVSTIGQEAFRE-SGITTVKLPN 257 (401)
T ss_dssp T--TCCEECTTTTTT-CCCSEEEEET
T ss_pred C--CccCcccccccc-CCccEEEeCC
Confidence 6 467777776766 7888888743
No 155
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.22 E-value=1.1e-05 Score=76.66 Aligned_cols=131 Identities=16% Similarity=0.194 Sum_probs=66.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCc-----ccCCCHHHHHHHHHHHH--
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLE-----LCKGTESERARTLFDQL-- 74 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~l~~~l-- 74 (629)
+.|+|.+|+||||+|+.+++.......+.. ......... ..+......+ .......+....+.+.+
T Consensus 48 ~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1njg_A 48 YLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDNC-REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY 120 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHHH-HHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHHH-HHHhccCCcceEEecCcccccHHHHHHHHHHhhh
Confidence 679999999999999999988654321110 000000000 0010000000 00001111122222222
Q ss_pred ---cCCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccccccc-------cccCCCCChHHHHHHHHHH
Q 047700 75 ---WKEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQNVLVS-------EMHSKNKPLAEWKDALQKL 139 (629)
Q Consensus 75 ---~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~~-------~~~l~~~~~~~w~~~~~~~ 139 (629)
.+++.+||+||++.. ..++.+...+.....+..+|+||+....... ...+...+.++...++...
T Consensus 121 ~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~ 197 (250)
T 1njg_A 121 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 197 (250)
T ss_dssp SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred chhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHH
Confidence 256899999999764 3455665555444567889999877653321 1114445555555554443
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=5.7e-07 Score=79.73 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=41.1
Q ss_pred CceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceeccCCC
Q 047700 491 QRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFCSGNC 570 (629)
Q Consensus 491 ~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 570 (629)
+|+. |++++|. +++. .+..+.+|++|+.|+|++|..+++....... ......++|+.|+|++|+++++-... .
T Consensus 62 ~L~~--LDLs~~~-Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~--~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~ 134 (176)
T 3e4g_A 62 KIQA--IDATDSC-IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLS--QLENLQKSMLEMEIISCGNVTDKGII-A 134 (176)
T ss_dssp CEEE--EEEESCC-CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHH--TCHHHHHHCCEEEEESCTTCCHHHHH-H
T ss_pred eEeE--EeCcCCC-ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHH--hcccccCCCCEEEcCCCCcCCHHHHH-H
Confidence 3455 5555554 4432 2233445555555555555544432211110 00001234555555555555442211 1
Q ss_pred eeecCCCceeeecCCCCcc
Q 047700 571 TFKFPSLEDLFVIDCPKVM 589 (629)
Q Consensus 571 ~~~~p~L~~L~i~~c~~L~ 589 (629)
...+|+|++|++++|+.++
T Consensus 135 L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGGCTTCCEEEEESCTTCC
T ss_pred HhcCCCCCEEECCCCCCCC
Confidence 2345666666666666554
No 157
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.19 E-value=8.4e-06 Score=83.71 Aligned_cols=114 Identities=20% Similarity=0.172 Sum_probs=79.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCccc--CCCHHHHHHHHHHHHc--CC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELC--KGTESERARTLFDQLW--KE 77 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~l~~~l~--~k 77 (629)
+.|+|..|+||||||+.+++...... -..+++++++...+...+.+.++..++.... .....+....+.+.+. ++
T Consensus 47 ~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 47 ATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 68999999999999999998876431 1346788888888888999999998875432 2234555556666665 67
Q ss_pred cEEEEEcCCCCC--cchhhhhhccCCCC----CCcEEEEeecccc
Q 047700 78 KILIILDDIWAN--IDLETVGILFGGAH----RGCKILLTPRYQN 116 (629)
Q Consensus 78 ~~LlVlDdv~~~--~~~~~l~~~~~~~~----~gs~ilvTTR~~~ 116 (629)
+.+||||+++.. .....+...+.... .+..||++|++..
T Consensus 126 ~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred eEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 899999999765 22334433332211 3677888888764
No 158
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.18 E-value=2.2e-05 Score=73.40 Aligned_cols=101 Identities=17% Similarity=0.124 Sum_probs=60.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.|+|.+|+|||++|+.+++.......-...+.++.+.......+...+........ .-.+++.+|
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~vl 106 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP--------------IGGAPFKII 106 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCC--------------STTCSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccC--------------CCccCceEE
Confidence 679999999999999999987643311122344555544444333322221111100 012578999
Q ss_pred EEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccc
Q 047700 82 ILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQN 116 (629)
Q Consensus 82 VlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~ 116 (629)
|+||++.. ...+.+...+.....+.++|+||+...
T Consensus 107 iiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 107 FLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp EEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred EEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 99999765 234445444433455778899888664
No 159
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.15 E-value=1.8e-06 Score=87.22 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=66.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc------CHHHHHHHHHHHhCC-----------------c
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA------NVEKIQDEIAEQLGL-----------------E 57 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~~~~~i~~~l~~-----------------~ 57 (629)
++.|+|++|+|||||++.++++. . .+|+++.... +...+.+.+...+.. .
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 105 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLT 105 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGT
T ss_pred eEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEeccee
Confidence 47899999999999999998774 1 6788775432 566666666665532 0
Q ss_pred c--cCCCHHHHHHHHHHHHcC-CcEEEEEcCCCCCcc---------hhhhhhccCCCCCCcEEEEeecccc
Q 047700 58 L--CKGTESERARTLFDQLWK-EKILIILDDIWANID---------LETVGILFGGAHRGCKILLTPRYQN 116 (629)
Q Consensus 58 ~--~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~---------~~~l~~~~~~~~~gs~ilvTTR~~~ 116 (629)
. ......+....+.+..+. ++++||+||++..+. +..+.... ....+.++|+|++...
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~il~g~~~~ 175 (350)
T 2qen_A 106 LEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY-DSLPNLKIILTGSEVG 175 (350)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH-HHCTTEEEEEEESSHH
T ss_pred eccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH-HhcCCeEEEEECCcHH
Confidence 0 012333444455544432 399999999976432 12222221 1124678999987653
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=1.6e-06 Score=76.84 Aligned_cols=85 Identities=14% Similarity=0.207 Sum_probs=55.5
Q ss_pred cCCccEEEecCCcccc-cchhhhcccCCcEEEcCCcC-CCC--cccccCc----cccceeeccCC-CCcc-CchhhhcCc
Q 047700 299 MSKLRGLALSKMQLLS-LPQSVHLLSNLQTLCLDQCV-LGD--ISIIGNL----EKLENLSLVDS-DIEW-LPNEIGELT 368 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~-l~~--~~~i~~l----~~L~~L~l~~~-~l~~-lp~~i~~l~ 368 (629)
-..|+.||+++|.++. --..+..+++|++|+|++|. +++ +..+..+ ++|++|++++| +++. --..+.+++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3478999999998772 23446788888888888885 555 4555553 36777777776 3551 113345667
Q ss_pred cccEEeecCCCCCCc
Q 047700 369 QLRLLDLSSCWNLKV 383 (629)
Q Consensus 369 ~L~~L~l~~~~~l~~ 383 (629)
+|++|++++|..++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 777777777765554
No 161
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.12 E-value=3.7e-06 Score=85.17 Aligned_cols=110 Identities=10% Similarity=0.121 Sum_probs=62.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-----cCHHHHHHHHHHHhCC-------------c-----
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSST-----ANVEKIQDEIAEQLGL-------------E----- 57 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i~~~l~~-------------~----- 57 (629)
++.|+|++|+|||||++.+.++... ..+|+++... .+...+...+...+.. .
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~ 106 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIV 106 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEE
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEE
Confidence 4789999999999999999987642 2578887642 3445555544443310 0
Q ss_pred c------------cCCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-----cchhhhhhccCCCCCCcEEEEeecccc
Q 047700 58 L------------CKGTESERARTLFDQLWKEKILIILDDIWAN-----IDLETVGILFGGAHRGCKILLTPRYQN 116 (629)
Q Consensus 58 ~------------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~ilvTTR~~~ 116 (629)
. ......+....+.+.-+ ++++|||||++.. .++..+...+.....+.++|+|+|...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~ 181 (357)
T 2fna_A 107 IMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMG 181 (357)
T ss_dssp ECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHH
T ss_pred ecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchH
Confidence 0 01122223333332211 4999999999753 223222222211124678999998754
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=7.2e-06 Score=82.74 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=16.7
Q ss_pred ccHHHHHHHHHHHHHHHhhcCcc
Q 047700 201 YTMQERRDKVYALVHRLKDSCLL 223 (629)
Q Consensus 201 ~~~~~~~~~~~~~i~~L~~~~ll 223 (629)
.+.++|...+.+++.+-..+|..
T Consensus 44 ~~~~~a~~~~~~l~~~k~~kGy~ 66 (362)
T 2ra8_A 44 SSAGEAEKAAGKLIAEKTKKGYV 66 (362)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCc
Confidence 35777888888888776666654
No 163
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.04 E-value=3e-06 Score=76.96 Aligned_cols=106 Identities=16% Similarity=0.114 Sum_probs=61.5
Q ss_pred cCCccEEEecCC-ccc-----ccchhhhcccCCcEEEcCCcCCCC--c----ccccCccccceeeccCCCCcc-----Cc
Q 047700 299 MSKLRGLALSKM-QLL-----SLPQSVHLLSNLQTLCLDQCVLGD--I----SIIGNLEKLENLSLVDSDIEW-----LP 361 (629)
Q Consensus 299 ~~~L~~L~l~~~-~~~-----~lp~~l~~l~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~l~~-----lp 361 (629)
.+.|++|+|++| .+. .+...+...++|++|+|++|.+.. . ..+...+.|++|+|++|.+.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 567777777777 665 234445556777777777777665 1 223344667777777776652 44
Q ss_pred hhhhcCccccEEee--cCCCCCCccCh----hhhhcCccCceEEeccccc
Q 047700 362 NEIGELTQLRLLDL--SSCWNLKVIPP----NVISKLTQLEELYMGNTFV 405 (629)
Q Consensus 362 ~~i~~l~~L~~L~l--~~~~~l~~~p~----~~i~~l~~L~~L~l~~~~~ 405 (629)
..+...++|++|++ ++| .++.... ..+...++|++|++++|.+
T Consensus 115 ~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 45555666777777 544 3332111 1133445566666665543
No 164
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.03 E-value=1e-05 Score=81.58 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=11.0
Q ss_pred ccccCceeeeEEEecCCCCcc
Q 047700 487 RQFIQRDIFKWRVSYCKRLKN 507 (629)
Q Consensus 487 ~~~~~L~~~~L~l~~c~~l~~ 507 (629)
..+++|+. |++++| .+++
T Consensus 304 ~~l~~L~~--L~L~~n-~i~d 321 (362)
T 2ra8_A 304 DKIKHLKF--INMKYN-YLSD 321 (362)
T ss_dssp HHHTTCSE--EECCSB-BCCH
T ss_pred ccCCcceE--EECCCC-cCCH
Confidence 35567777 777765 3443
No 165
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.92 E-value=1.5e-05 Score=76.18 Aligned_cols=60 Identities=28% Similarity=0.310 Sum_probs=27.2
Q ss_pred cCCccEEEecCCccccc---chhhhcccCCcEEEcCCcCCCCcccccCcc--ccceeeccCCCCc
Q 047700 299 MSKLRGLALSKMQLLSL---PQSVHLLSNLQTLCLDQCVLGDISIIGNLE--KLENLSLVDSDIE 358 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~l---p~~l~~l~~L~~L~l~~~~l~~~~~i~~l~--~L~~L~l~~~~l~ 358 (629)
+++|++|+|++|.++.+ |..+..+++|++|+|++|.+..+..+..+. +|++|++++|.+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 44455555555544432 233344555555555555544433333333 4444444444443
No 166
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.87 E-value=1.9e-05 Score=71.34 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=56.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.|+|..|+||||||+.+++.......+. ++++ +..++...+.......... . +.+.+ .+.-+|
T Consensus 41 ~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~~----~----~~~~~-~~~~ll 104 (180)
T 3ec2_A 41 LTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKDT----K----FLKTV-LNSPVL 104 (180)
T ss_dssp EEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCCS----H----HHHHH-HTCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchHH----H----HHHHh-cCCCEE
Confidence 78999999999999999999876432232 2233 4455555554443211111 1 22222 255688
Q ss_pred EEcCCCC--Ccchhh--hhhccCC-CCCCcEEEEeecccc
Q 047700 82 ILDDIWA--NIDLET--VGILFGG-AHRGCKILLTPRYQN 116 (629)
Q Consensus 82 VlDdv~~--~~~~~~--l~~~~~~-~~~gs~ilvTTR~~~ 116 (629)
||||++. .+.|.. +...+.. ...|..||+||....
T Consensus 105 ilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 105 VLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp EEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred EEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 9999983 344432 2222211 124678888887553
No 167
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.87 E-value=9.4e-05 Score=72.47 Aligned_cols=89 Identities=13% Similarity=0.090 Sum_probs=60.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCC---C-C-eEEEEEeCCCcCHHHHHHHHHHHhCCccc-CCCHHHHHHHHHHHH-
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKL---F-D-QVVFVLKSSTANVEKIQDEIAEQLGLELC-KGTESERARTLFDQL- 74 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~---F-~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l- 74 (629)
+-|+|..|+|||++|++|+++...... . . .++.|++....+...++..|++++..... .....+....+.+.+
T Consensus 48 lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~ 127 (318)
T 3te6_A 48 FYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVP 127 (318)
T ss_dssp EEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh
Confidence 568999999999999999999764321 1 1 35677777778889999999999965421 111223344455554
Q ss_pred --cCCcEEEEEcCCCCCc
Q 047700 75 --WKEKILIILDDIWANI 90 (629)
Q Consensus 75 --~~k~~LlVlDdv~~~~ 90 (629)
++++++++||+++.-.
T Consensus 128 ~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 128 KAKKRKTLILIQNPENLL 145 (318)
T ss_dssp GGGSCEEEEEEECCSSSC
T ss_pred hccCCceEEEEecHHHhh
Confidence 4678999999998654
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.80 E-value=0.00016 Score=74.22 Aligned_cols=55 Identities=9% Similarity=0.107 Sum_probs=32.7
Q ss_pred ccceEEeccCCCCCCCCCCCCCCCcchhccCCccEEEecCCcccccc-hhhhcccCCcEEEcCC
Q 047700 270 KNCSAVSLNDIEIGVLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLP-QSVHLLSNLQTLCLDQ 332 (629)
Q Consensus 270 ~~l~~L~l~~~~~~~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~ 332 (629)
.+++.+.+.. .+..++..- +. .|++|+.+++..+ ++.++ ..+..+..|+.+.+..
T Consensus 71 ~~L~~i~lp~-~i~~I~~~a-F~-----~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFA-FE-----NCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTEEEEECCT-TCCEECTTT-TT-----TCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred CCceEEEeCC-CccCcchhH-hh-----CCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 4677777753 355555321 11 1788888888654 55443 3466677777766543
No 169
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.78 E-value=2e-05 Score=75.29 Aligned_cols=94 Identities=15% Similarity=0.170 Sum_probs=64.4
Q ss_pred EEecCCcccccchh----hhcccCCcEEEcCCcCCCCcc----cccCccccceeeccCCCCccCchhhhcCc--cccEEe
Q 047700 305 LALSKMQLLSLPQS----VHLLSNLQTLCLDQCVLGDIS----IIGNLEKLENLSLVDSDIEWLPNEIGELT--QLRLLD 374 (629)
Q Consensus 305 L~l~~~~~~~lp~~----l~~l~~L~~L~l~~~~l~~~~----~i~~l~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~ 374 (629)
++++.|....++.. ..++++|+.|+|++|.+..++ .++.+++|++|+|++|.++.+ ..+..+. +|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEE
Confidence 45566654433322 246789999999999988743 345788999999999988876 3355555 888888
Q ss_pred ecCCCCCCccC------hhhhhcCccCceEE
Q 047700 375 LSSCWNLKVIP------PNVISKLTQLEELY 399 (629)
Q Consensus 375 l~~~~~l~~~p------~~~i~~l~~L~~L~ 399 (629)
+++|...+.+| ...+..+++|+.|+
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 88885544444 13367778888776
No 170
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.75 E-value=1.6e-05 Score=72.13 Aligned_cols=103 Identities=15% Similarity=0.205 Sum_probs=79.8
Q ss_pred cccceEEeccCC-CCCC-----CCCCCCCCCcchhccCCccEEEecCCccc-----ccchhhhcccCCcEEEcCCcCCCC
Q 047700 269 LKNCSAVSLNDI-EIGV-----LPKGLEYPQLEFFWMSKLRGLALSKMQLL-----SLPQSVHLLSNLQTLCLDQCVLGD 337 (629)
Q Consensus 269 ~~~l~~L~l~~~-~~~~-----lp~~~~~~~l~~l~~~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~l~~~~l~~ 337 (629)
.+.+++|++.+| .++. +...+.. .++|++|+|++|.+. .+...+...+.|++|+|++|.+..
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-------~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKT-------NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTT-------CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHh-------CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 357899999988 7643 2222221 678999999999987 345567777899999999999987
Q ss_pred ------cccccCccccceeec--cCCCCcc-----CchhhhcCccccEEeecCC
Q 047700 338 ------ISIIGNLEKLENLSL--VDSDIEW-----LPNEIGELTQLRLLDLSSC 378 (629)
Q Consensus 338 ------~~~i~~l~~L~~L~l--~~~~l~~-----lp~~i~~l~~L~~L~l~~~ 378 (629)
...+...+.|++|++ ++|.+.. +...+...++|++|++++|
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 245677889999999 8888872 5556677899999999998
No 171
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.71 E-value=2.7e-05 Score=71.77 Aligned_cols=97 Identities=22% Similarity=0.207 Sum_probs=54.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.|+|.+|+|||+||+++++..... ...++++++ .++...+...... ..... +.+.+... -+|
T Consensus 57 ~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~----~~~~~----~~~~~~~~-~~l 119 (202)
T 2w58_A 57 LYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYV------PELFRELKHSLQD----QTMNE----KLDYIKKV-PVL 119 (202)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEH------HHHHHHHHHC-------CCCHH----HHHHHHHS-SEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEh------HHHHHHHHHHhcc----chHHH----HHHHhcCC-CEE
Confidence 6799999999999999999987654 345666654 3444444332211 11111 22233322 389
Q ss_pred EEcCCCCC--cchhh--hhh-ccCC-CCCCcEEEEeeccc
Q 047700 82 ILDDIWAN--IDLET--VGI-LFGG-AHRGCKILLTPRYQ 115 (629)
Q Consensus 82 VlDdv~~~--~~~~~--l~~-~~~~-~~~gs~ilvTTR~~ 115 (629)
||||++.. ..|.. +.. .+.. ...+.++|+||...
T Consensus 120 ilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 120 MLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp EEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 99999653 33322 221 1211 12355788888743
No 172
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.58 E-value=6.4e-05 Score=74.82 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=67.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHH-cCCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQL-WKEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~k~~L 80 (629)
+.|+|++|+||||+|+.+++.......-...++++.+.......+ ++++..+..... .+ .+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~-------------~~~~~~~~v 110 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHFAQKKL-------------HLPPGKHKI 110 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHHHBCC-------------CCCTTCCEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHHHhccc-------------cCCCCCceE
Confidence 579999999999999999988543211122344544443332222 222222210000 01 356899
Q ss_pred EEEcCCCCC--cchhhhhhccCCCCCCcEEEEeeccccccc-----c--cccCCCCChHHHHHHHHHH
Q 047700 81 IILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQNVLV-----S--EMHSKNKPLAEWKDALQKL 139 (629)
Q Consensus 81 lVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~-----~--~~~l~~~~~~~w~~~~~~~ 139 (629)
+|+||++.. ..++.+...+.....++++|+||+...-.. + ...+...+.++....+...
T Consensus 111 iiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~ 178 (323)
T 1sxj_B 111 VILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQI 178 (323)
T ss_dssp EEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred EEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHH
Confidence 999999764 334445444433345678888887654321 1 1114445565555555443
No 173
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.42 E-value=0.00025 Score=73.59 Aligned_cols=100 Identities=17% Similarity=0.278 Sum_probs=58.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.|+|..|+||||||+.+++.......-..+++++. .++..++...+... . ...+.+.++.+.-+|
T Consensus 133 lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~vL 198 (440)
T 2z4s_A 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG----K----LNEFREKYRKKVDIL 198 (440)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH------HHHHHHHHHHHHTT----C----HHHHHHHHTTTCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHcc----c----HHHHHHHhcCCCCEE
Confidence 679999999999999999998754411122345543 33444444444321 1 123344444467899
Q ss_pred EEcCCCCCcc---h-hhhhhccCC-CCCCcEEEEeeccc
Q 047700 82 ILDDIWANID---L-ETVGILFGG-AHRGCKILLTPRYQ 115 (629)
Q Consensus 82 VlDdv~~~~~---~-~~l~~~~~~-~~~gs~ilvTTR~~ 115 (629)
+|||++.... . +.+...+.. ...|..||+||...
T Consensus 199 ~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 199 LIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp EEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred EEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 9999975421 2 223222211 23467899988764
No 174
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.41 E-value=0.00012 Score=63.48 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=28.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS 39 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 39 (629)
+++|+|..|+||||||+.+++.....+ + .++++....
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g-~-~~~~~~~~~ 74 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAG-K-NAAYIDAAS 74 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTT-C-CEEEEETTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcC-C-cEEEEcHHH
Confidence 378999999999999999999876432 2 256676544
No 175
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.36 E-value=0.00012 Score=73.05 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=64.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHH-cCCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQL-WKEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~k~~L 80 (629)
+.|+|..|+||||+|+.+++.......-...+.++.+.......+. ..+...... ..+ .+++.+
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~~~~v 113 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIR-EKVKEFART--------------KPIGGASFKI 113 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTH-HHHHHHHHS--------------CCGGGCSCEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHH-HHHHHHHhh--------------CCcCCCCCeE
Confidence 5689999999999999999885322100123334433321111111 111111000 001 167889
Q ss_pred EEEcCCCCC--cchhhhhhccCCCCCCcEEEEeeccccccc-----c--cccCCCCChHHHHHHHHHH
Q 047700 81 IILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQNVLV-----S--EMHSKNKPLAEWKDALQKL 139 (629)
Q Consensus 81 lVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~-----~--~~~l~~~~~~~w~~~~~~~ 139 (629)
+|+||++.. ...+.+...+.....+.++|+||....... + ...+...+.++....+...
T Consensus 114 liiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~ 181 (327)
T 1iqp_A 114 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYI 181 (327)
T ss_dssp EEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHH
T ss_pred EEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHH
Confidence 999999765 344555555443455778888887654321 1 1113444555555555443
No 176
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.36 E-value=0.00032 Score=63.51 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+.|+|..|+|||++|+.+++....
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh
Confidence 579999999999999999988643
No 177
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.32 E-value=0.0018 Score=66.25 Aligned_cols=99 Identities=10% Similarity=0.015 Sum_probs=48.6
Q ss_pred ccccCceeeeEEEecCCCCccccchHHHhcccCcceEEEecccccceeccccccccccccccccccccccccccccceec
Q 047700 487 RQFIQRDIFKWRVSYCKRLKNLVSSFTAKSLVHLMKLRIGGCKLMTEIISSEEDVEEDEVVFSRLKWLSLECLESLTSFC 566 (629)
Q Consensus 487 ~~~~~L~~~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 566 (629)
..+.+|+. +.+.. .++.+.. ..+.++.+|+.+.|.+. ++.+...... .+.+|+.+.|.. .++.+.
T Consensus 294 ~~~~~L~~--i~l~~--~i~~I~~-~aF~~c~~L~~i~lp~~--v~~I~~~aF~------~c~~L~~i~lp~--~l~~I~ 358 (394)
T 4fs7_A 294 YGCSSLTE--VKLLD--SVKFIGE-EAFESCTSLVSIDLPYL--VEEIGKRSFR------GCTSLSNINFPL--SLRKIG 358 (394)
T ss_dssp TTCTTCCE--EEECT--TCCEECT-TTTTTCTTCCEECCCTT--CCEECTTTTT------TCTTCCEECCCT--TCCEEC
T ss_pred cccccccc--ccccc--ccceech-hhhcCCCCCCEEEeCCc--ccEEhHHhcc------CCCCCCEEEECc--cccEeh
Confidence 34455666 55533 3444432 34566777777776432 4444332211 356666666643 255553
Q ss_pred cCCCeeecCCCceeeecCCCCccccCCCCCCchhhHH
Q 047700 567 SGNCTFKFPSLEDLFVIDCPKVMIFSCGVSSTPRLRE 603 (629)
Q Consensus 567 ~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~ 603 (629)
.. ....+++|+.+.+.. .++.+...+.++++|+.
T Consensus 359 ~~-aF~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 359 AN-AFQGCINLKKVELPK--RLEQYRYDFEDTTKFKW 392 (394)
T ss_dssp TT-TBTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEE
T ss_pred HH-HhhCCCCCCEEEECC--CCEEhhheecCCCCCcE
Confidence 31 234456677776642 23333333445555443
No 178
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.24 E-value=0.00032 Score=69.28 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
+.|+|..|+|||++|+.+++.....
T Consensus 70 vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 70 MSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5799999999999999998887554
No 179
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.20 E-value=0.00044 Score=67.39 Aligned_cols=23 Identities=43% Similarity=0.544 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+.|+|..|+|||+||+++++...
T Consensus 54 ~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp EEEESSSSSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 57999999999999999988754
No 180
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.06 E-value=0.00017 Score=68.13 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=28.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS 39 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 39 (629)
+.|+|..|+||||+|+.+++..... ...+.|++++.
T Consensus 55 ~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~ 90 (242)
T 3bos_A 55 IYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGI 90 (242)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHH
Confidence 6799999999999999999887654 34566776644
No 181
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.05 E-value=0.00032 Score=60.56 Aligned_cols=86 Identities=14% Similarity=0.083 Sum_probs=47.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh-cCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK-EKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~L 80 (629)
|-|+|..|+|||++|+++++.... ...| + ++++...+. ....+ .+. . ...-.
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~-----------------~~~~~---~~~-~--a~~g~ 79 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA-----------------PQLND---FIA-L--AQGGT 79 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS-----------------SCHHH---HHH-H--HTTSC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc-----------------hhhhc---HHH-H--cCCcE
Confidence 579999999999999999887533 2222 3 655443222 00111 111 1 12346
Q ss_pred EEEcCCCCCc--chhhhhhccCCCCCCcEEEEeecc
Q 047700 81 IILDDIWANI--DLETVGILFGGAHRGCKILLTPRY 114 (629)
Q Consensus 81 lVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTTR~ 114 (629)
|+||+++... ....+...+.......+||.||..
T Consensus 80 l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 80 LVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred EEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 8899997652 223344433333334567777764
No 182
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.01 E-value=0.00075 Score=66.81 Aligned_cols=121 Identities=16% Similarity=0.179 Sum_probs=64.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHH--H-cCCc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQ--L-WKEK 78 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~--l-~~k~ 78 (629)
+.|+|..|+|||++|+.+.+.......-...+.++.+.......+ .+........ + .+++
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~ 103 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV-----------------RHKIKEFARTAPIGGAPF 103 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTS-----------------SHHHHHHHHSCCSSSCCC
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHH-----------------HHHHHHHHhcCCCCCCCc
Confidence 578999999999999999987532110011233444332111100 0111111101 1 2568
Q ss_pred EEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeeccccccc-----c--cccCCCCChHHHHHHHHHH
Q 047700 79 ILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQNVLV-----S--EMHSKNKPLAEWKDALQKL 139 (629)
Q Consensus 79 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~-----~--~~~l~~~~~~~w~~~~~~~ 139 (629)
.++|+|+++.. ...+.+...+.....+.++|+||....-.. + ...+...+..+....+...
T Consensus 104 ~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~ 173 (319)
T 2chq_A 104 KIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEI 173 (319)
T ss_dssp EEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHH
T ss_pred eEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHH
Confidence 89999999755 234555555554456778888886654221 1 1114445666665555544
No 183
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.00 E-value=0.00083 Score=64.87 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+-|+|..|+|||++|+++++...
T Consensus 67 vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 67 VLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 56899999999999999998743
No 184
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.97 E-value=0.0032 Score=62.26 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=40.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHc-CCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLW-KEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~k~~L 80 (629)
|-++|..|+|||+||+++++.... ...+.|..+.-. ....... ......+.+..+ .++.+
T Consensus 48 iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l~--------------~~~~g~~-~~~~~~lf~~a~~~~~~v 108 (322)
T 1xwi_A 48 ILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLV--------------SKWLGES-EKLVKNLFQLARENKPSI 108 (322)
T ss_dssp EEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSSC--------------CSSCCSC-HHHHHHHHHHHHHTSSEE
T ss_pred EEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHHH--------------hhhhhHH-HHHHHHHHHHHHhcCCcE
Confidence 568999999999999999987621 122334433211 1111111 222333333333 67889
Q ss_pred EEEcCCCCC
Q 047700 81 IILDDIWAN 89 (629)
Q Consensus 81 lVlDdv~~~ 89 (629)
|++|+++..
T Consensus 109 l~iDEid~l 117 (322)
T 1xwi_A 109 IFIDEIDSL 117 (322)
T ss_dssp EEEETTTGG
T ss_pred EEeecHHHh
Confidence 999999754
No 185
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.97 E-value=0.0018 Score=64.25 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|-++|..|+|||+||+++++...
T Consensus 54 vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 54 ILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp EEEECSSSSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHC
Confidence 57999999999999999998754
No 186
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.96 E-value=0.0023 Score=61.22 Aligned_cols=23 Identities=39% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+.|+|..|+|||++|+++++...
T Consensus 42 vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999998764
No 187
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.92 E-value=0.0011 Score=65.84 Aligned_cols=97 Identities=25% Similarity=0.251 Sum_probs=53.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+.|+|..|+||||||+.+++..... -..++++++ .++..++...+... . ...+.+.+ .+.-+|
T Consensus 40 lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~------~~~~~~~~~~~~~~----~----~~~~~~~~-~~~~vL 102 (324)
T 1l8q_A 40 IFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSA------DDFAQAMVEHLKKG----T----INEFRNMY-KSVDLL 102 (324)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEH------HHHHHHHHHHHHHT----C----HHHHHHHH-HTCSEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEH------HHHHHHHHHHHHcC----c----HHHHHHHh-cCCCEE
Confidence 6799999999999999999987543 122345543 33344443333211 0 11222223 246789
Q ss_pred EEcCCCCCc---ch-hhhhhccCC-CCCCcEEEEeeccc
Q 047700 82 ILDDIWANI---DL-ETVGILFGG-AHRGCKILLTPRYQ 115 (629)
Q Consensus 82 VlDdv~~~~---~~-~~l~~~~~~-~~~gs~ilvTTR~~ 115 (629)
++||++... .+ +.+...+.. ...|.+|++||...
T Consensus 103 ~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 103 LLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred EEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 999997543 22 222222211 12456788888643
No 188
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.90 E-value=0.0014 Score=66.45 Aligned_cols=131 Identities=16% Similarity=0.148 Sum_probs=63.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCc-----ccCCCHHHHHHHHHHHHc-
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLE-----LCKGTESERARTLFDQLW- 75 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~l~~~l~- 75 (629)
+.|+|..|+||||+|+.+.+.......+.. ..+... .-...+...-..+ .......+....+.+.+.
T Consensus 41 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY 113 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhh
Confidence 579999999999999999887643221110 000000 0011111100000 000000011122333332
Q ss_pred ----CCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeeccccccc-----cc--ccCCCCChHHHHHHHHHH
Q 047700 76 ----KEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQNVLV-----SE--MHSKNKPLAEWKDALQKL 139 (629)
Q Consensus 76 ----~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v~~-----~~--~~l~~~~~~~w~~~~~~~ 139 (629)
+++.++|+||++.. ...+.+...+.....+..+|++|....-.. ++ ..+...+.++....+...
T Consensus 114 ~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~ 190 (373)
T 1jr3_A 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 (373)
T ss_dssp CCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred ccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHH
Confidence 56789999999754 334555555544445667777776544221 11 114455666665555544
No 189
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.83 E-value=0.0083 Score=59.35 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+.|+|..|+|||++|+++++...
T Consensus 41 vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 41 LLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CEEECCTTCCCHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999998764
No 190
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.82 E-value=0.00059 Score=66.22 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=43.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe--CCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLK--SSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKI 79 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 79 (629)
+-|+|++|+||||||.++... . -..+.|+++ .+..+. ...+.++....+.+.+...+
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~-~----G~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~~~~- 184 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA-L----GGKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAMLQHR- 184 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH-H----HTTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHHHCS-
T ss_pred EEEEcCCCCCHHHHHHHHHHh-C----CCCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHhhCC-
Confidence 579999999999999999876 1 113446666 333111 00233445556666676666
Q ss_pred EEEEcCCCCC
Q 047700 80 LIILDDIWAN 89 (629)
Q Consensus 80 LlVlDdv~~~ 89 (629)
+||+|++...
T Consensus 185 LLVIDsI~aL 194 (331)
T 2vhj_A 185 VIVIDSLKNV 194 (331)
T ss_dssp EEEEECCTTT
T ss_pred EEEEeccccc
Confidence 9999999643
No 191
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.81 E-value=0.0035 Score=64.87 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=58.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~L 80 (629)
+-|+|..|+||||+|+.+.+..... ++.++-.. ...++ +.++... . .....+++.+
T Consensus 53 vLL~GppGtGKTtlAr~ia~~~~~~-------f~~l~a~~~~~~~i-r~~~~~a-------------~--~~~~~~~~~i 109 (447)
T 3pvs_A 53 MILWGPPGTGKTTLAEVIARYANAD-------VERISAVTSGVKEI-REAIERA-------------R--QNRNAGRRTI 109 (447)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTCE-------EEEEETTTCCHHHH-HHHHHHH-------------H--HHHHTTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCC-------eEEEEeccCCHHHH-HHHHHHH-------------H--HhhhcCCCcE
Confidence 5799999999999999999886432 33333222 22222 2222211 0 0111477899
Q ss_pred EEEcCCCCC--cchhhhhhccCCCCCCcEEEE-eeccccc--cc----c--cccCCCCChHHHHHHHHHH
Q 047700 81 IILDDIWAN--IDLETVGILFGGAHRGCKILL-TPRYQNV--LV----S--EMHSKNKPLAEWKDALQKL 139 (629)
Q Consensus 81 lVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv-TTR~~~v--~~----~--~~~l~~~~~~~w~~~~~~~ 139 (629)
|++|+++.. .+.+.+...+.. + ...+|. ||.+... .. + ...+...+.++...++...
T Consensus 110 LfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~ 177 (447)
T 3pvs_A 110 LFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQA 177 (447)
T ss_dssp EEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHH
T ss_pred EEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHH
Confidence 999999865 233444444422 2 233443 4444321 10 1 1114555777776666665
No 192
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.78 E-value=0.00074 Score=66.38 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=26.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh-hcCCCCeEEEEEe
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK-KEKLFDQVVFVLK 37 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~-~~~~F~~~~wv~v 37 (629)
+.|+|..|+|||+||+++++... .+ . ..++++++
T Consensus 155 lll~G~~GtGKT~La~aia~~~~~~~-g-~~v~~~~~ 189 (308)
T 2qgz_A 155 LYLYGDMGIGKSYLLAAMAHELSEKK-G-VSTTLLHF 189 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHS-C-CCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEH
Confidence 57999999999999999999877 44 2 34455554
No 193
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.72 E-value=0.0081 Score=56.56 Aligned_cols=86 Identities=16% Similarity=0.158 Sum_probs=52.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCeEEEEEeCCCcCHHHHHHHHHHHhCCcc----------cCCCHHH-
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEK----LFDQVVFVLKSSTANVEKIQDEIAEQLGLEL----------CKGTESE- 65 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----------~~~~~~~- 65 (629)
++.|+|.+|+||||||..+........ .-..++|++....++...+. .+++.++... ...+..+
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDHQ 104 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHHH
Confidence 478999999999999999988633211 23678999887766655443 3444444221 1112222
Q ss_pred --HHHHHHHHHc-CCcEEEEEcCCC
Q 047700 66 --RARTLFDQLW-KEKILIILDDIW 87 (629)
Q Consensus 66 --~~~~l~~~l~-~k~~LlVlDdv~ 87 (629)
....+.+.+. .+.-+||+|.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 105 TQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHhcCCceEEEEeCch
Confidence 2233444444 467788888884
No 194
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.69 E-value=0.0048 Score=57.73 Aligned_cols=111 Identities=16% Similarity=0.242 Sum_probs=59.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcc----------------------
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLEL---------------------- 58 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------------------- 58 (629)
+++|+|..|+|||||++.+.......+ ..++|+.... ...++...+. .++...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQW 99 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCcee
Confidence 478999999999999999987665432 2456665433 3444443332 332110
Q ss_pred --cCCCHHHHHHHHHHHHc-CC--cEEEEEcCCCC-----CcchhhhhhccCC--CCCCcEEEEeecccc
Q 047700 59 --CKGTESERARTLFDQLW-KE--KILIILDDIWA-----NIDLETVGILFGG--AHRGCKILLTPRYQN 116 (629)
Q Consensus 59 --~~~~~~~~~~~l~~~l~-~k--~~LlVlDdv~~-----~~~~~~l~~~~~~--~~~gs~ilvTTR~~~ 116 (629)
...+..+....+...+. .+ ..++|+|.... ......+...+.. ...|..||++|....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~ 169 (235)
T 2w0m_A 100 SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAI 169 (235)
T ss_dssp BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC---
T ss_pred eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 01123344444444443 23 34999999862 2222333222221 234778999988763
No 195
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.68 E-value=0.001 Score=59.84 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+.|+|..|+|||++|+.+++....
T Consensus 46 vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 46 PILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEESCGGGCHHHHHHHHHHHHHT
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh
Confidence 569999999999999999988643
No 196
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.68 E-value=0.0077 Score=59.91 Aligned_cols=98 Identities=12% Similarity=0.082 Sum_probs=55.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcC--------------------CCCeEEEEEeC---CCcCHHHHHHHHHHHhCCcc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEK--------------------LFDQVVFVLKS---STANVEKIQDEIAEQLGLEL 58 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs---~~~~~~~~~~~i~~~l~~~~ 58 (629)
+-++|..|+|||++|+.+.+...... |+|. .++... ....+..+ +++.+.+....
T Consensus 27 ~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~~~~~~i~~i-r~l~~~~~~~~ 104 (334)
T 1a5t_A 27 LLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEKGKNTLGVDAV-REVTEKLNEHA 104 (334)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCTTCSSBCHHHH-HHHHHHTTSCC
T ss_pred EEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccccCCCCCHHHH-HHHHHHHhhcc
Confidence 56899999999999999988754221 2332 233321 11222221 22332222110
Q ss_pred cCCCHHHHHHHHHHHHcCCcEEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccc
Q 047700 59 CKGTESERARTLFDQLWKEKILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQN 116 (629)
Q Consensus 59 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~ 116 (629)
..+++-++|+|+++.. ...+.+...+.....+..+|++|.+.+
T Consensus 105 ---------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 105 ---------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp ---------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred ---------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 1256788999999765 234556555544445677777776654
No 197
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.68 E-value=0.0049 Score=57.10 Aligned_cols=83 Identities=25% Similarity=0.239 Sum_probs=49.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCC-----------cc-cCCCH-HHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGL-----------EL-CKGTE-SERA 67 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-----------~~-~~~~~-~~~~ 67 (629)
++.|+|.+|+||||||..+.. . . -..++|++....++...+.+ ++...+. .. ..... ....
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~--~-~--~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL--L-S--GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRVI 95 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--H-H--CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--H-c--CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHHH
Confidence 478999999999999999987 2 1 35788998877666655543 3333221 11 11111 1223
Q ss_pred HHHHHHHcCCcEEEEEcCCCCC
Q 047700 68 RTLFDQLWKEKILIILDDIWAN 89 (629)
Q Consensus 68 ~~l~~~l~~k~~LlVlDdv~~~ 89 (629)
..++..+..+.-++|+|.+...
T Consensus 96 ~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 96 GSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHhhcCCCEEEEcCcHHH
Confidence 3333333334678889988543
No 198
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.68 E-value=0.0037 Score=62.82 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|-|+|..|+|||+||+++++...
T Consensus 87 iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 87 ILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 67899999999999999999864
No 199
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.63 E-value=0.0019 Score=64.10 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=52.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcEEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKILI 81 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~Ll 81 (629)
+-+.|..|+|||++|+.+.+.... ..+.++.+. .... ..++++........ ..+++-++
T Consensus 51 ~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~-~~~~-~i~~~~~~~~~~~~--------------~~~~~~vl 109 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSD-CKID-FVRGPLTNFASAAS--------------FDGRQKVI 109 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTT-CCHH-HHHTHHHHHHHBCC--------------CSSCEEEE
T ss_pred EEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEcccc-cCHH-HHHHHHHHHHhhcc--------------cCCCCeEE
Confidence 346677999999999999887632 234455433 2222 22222222110000 12478899
Q ss_pred EEcCCCCCc---chhhhhhccCCCCCCcEEEEeecccc
Q 047700 82 ILDDIWANI---DLETVGILFGGAHRGCKILLTPRYQN 116 (629)
Q Consensus 82 VlDdv~~~~---~~~~l~~~~~~~~~gs~ilvTTR~~~ 116 (629)
++||++... ..+.+...+.....+.++|+||....
T Consensus 110 iiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 110 VIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp EEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred EEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 999998653 23334333322234567888887654
No 200
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.58 E-value=0.0062 Score=54.02 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=18.1
Q ss_pred CEEEEcCCCCcHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEV 19 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v 19 (629)
+|+|.|+.|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 201
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.55 E-value=0.0074 Score=62.59 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|-++|..|+|||+||+++++..
T Consensus 170 vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 170 ILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999875
No 202
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.50 E-value=0.033 Score=56.79 Aligned_cols=96 Identities=9% Similarity=0.191 Sum_probs=39.7
Q ss_pred ccEEEecCCcccccc-hhhhcccCCcEEEcCCcC---CCCc--ccccCccccceeeccCCCCccCch-hhhcCccccEEe
Q 047700 302 LRGLALSKMQLLSLP-QSVHLLSNLQTLCLDQCV---LGDI--SIIGNLEKLENLSLVDSDIEWLPN-EIGELTQLRLLD 374 (629)
Q Consensus 302 L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~---l~~~--~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~ 374 (629)
|+.+.+..+ ++.+. ..|.+|.+|+.+.+..+. ++.+ ..|..+..|+.+.+..+ ++.++. .+..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 444444322 33332 234455555555554432 2221 22344444544444332 333322 223445555555
Q ss_pred ecCCCCCCccChhhhhcCccCceEEec
Q 047700 375 LSSCWNLKVIPPNVISKLTQLEELYMG 401 (629)
Q Consensus 375 l~~~~~l~~~p~~~i~~l~~L~~L~l~ 401 (629)
+.. .+..++..++....+|+.+.+.
T Consensus 144 lp~--~~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 144 IPE--GVTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp CCT--TCCEECTTTTTTCTTCCEEECC
T ss_pred ccc--eeeeecccceeccccccccccc
Confidence 543 2333443334444445544443
No 203
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.48 E-value=0.035 Score=56.59 Aligned_cols=100 Identities=11% Similarity=0.223 Sum_probs=69.6
Q ss_pred cCCccEEEecCCc---ccccc-hhhhcccCCcEEEcCCcCCCC--cccccCccccceeeccCCCCccCch-hhhcCcccc
Q 047700 299 MSKLRGLALSKMQ---LLSLP-QSVHLLSNLQTLCLDQCVLGD--ISIIGNLEKLENLSLVDSDIEWLPN-EIGELTQLR 371 (629)
Q Consensus 299 ~~~L~~L~l~~~~---~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~ 371 (629)
|++|+.+.+..+. ++.+. ..|..+.+|+.+.+..+ ++. ...+..+.+|+.+.+..+ +..++. .+..+.+|+
T Consensus 86 C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~ 163 (394)
T 4gt6_A 86 CTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLH 163 (394)
T ss_dssp CTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred CccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecccccc
Confidence 8899999998764 55554 35777888888777654 333 245778899999999754 444443 456788999
Q ss_pred EEeecCCCCCCccChhhhhcCccCceEEeccc
Q 047700 372 LLDLSSCWNLKVIPPNVISKLTQLEELYMGNT 403 (629)
Q Consensus 372 ~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~ 403 (629)
.+.+.. .+..+...++.. .+|+.+.+..+
T Consensus 164 ~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~~ 192 (394)
T 4gt6_A 164 TVTLPD--SVTAIEERAFTG-TALTQIHIPAK 192 (394)
T ss_dssp EEECCT--TCCEECTTTTTT-CCCSEEEECTT
T ss_pred cccccc--eeeEeccccccc-cceeEEEECCc
Confidence 998876 466676665543 57888887654
No 204
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.46 E-value=0.0071 Score=60.71 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+.|+|..|+||||+|+.+....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998853
No 205
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.36 E-value=0.0053 Score=62.07 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+-|+|..|+|||++|+++.+....
T Consensus 73 vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 73 VLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 579999999999999999998763
No 206
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.35 E-value=0.0035 Score=61.13 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+.++|..|+|||+||+.+++...
T Consensus 39 lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999874
No 207
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.32 E-value=0.0054 Score=60.07 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|.|+|..|+|||+||+++++...
T Consensus 52 vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 52 VLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT
T ss_pred EEEECCCCcCHHHHHHHHHHHhC
Confidence 67999999999999999998764
No 208
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.32 E-value=0.015 Score=57.78 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=54.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcc------cCCCHHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLEL------CKGTESERARTLFDQL 74 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~l 74 (629)
++.|+|..|+||||||..+.......+ ..++||+....++.. .+++++... ...+.++....+...+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 478999999999999999988866432 357789887777754 455555431 1233444445555444
Q ss_pred c-CCcEEEEEcCCCC
Q 047700 75 W-KEKILIILDDIWA 88 (629)
Q Consensus 75 ~-~k~~LlVlDdv~~ 88 (629)
+ ++.-++|+|.+..
T Consensus 136 ~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAA 150 (356)
T ss_dssp HTSCCSEEEEECTTT
T ss_pred hhcCCCeEEehHhhh
Confidence 4 5667899999854
No 209
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.31 E-value=0.0053 Score=61.73 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|.|+|..|+|||+||+++++...
T Consensus 120 vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 120 ILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 56999999999999999988753
No 210
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.31 E-value=0.0043 Score=62.26 Aligned_cols=110 Identities=16% Similarity=0.149 Sum_probs=54.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCC-CeEEEEEeCCCcCHHHHHHHHHHHhCC-cccCCCHHHHHHHHHHHHcCCcE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLF-DQVVFVLKSSTANVEKIQDEIAEQLGL-ELCKGTESERARTLFDQLWKEKI 79 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~l~~~l~~k~~ 79 (629)
+.|+|..|+||||+|+.+.+.......+ ..++.++.+.......+ ++.+..... ........ .....-.+++-
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 135 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNFARLTVSKPSKH----DLENYPCPPYK 135 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHHHHSCCCCCCTT----HHHHSCCCSCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHHhhhcccccchh----hcccCCCCCce
Confidence 5789999999999999999875321111 12233444433233322 222222211 00000000 00001124567
Q ss_pred EEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccc
Q 047700 80 LIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQN 116 (629)
Q Consensus 80 LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~ 116 (629)
++++|+++.. ...+.+...+.......++|++|....
T Consensus 136 vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 136 IIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp EEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred EEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 9999999754 223444444433334567777775443
No 211
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.28 E-value=0.008 Score=61.27 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|-|+|..|+|||+||+++++...
T Consensus 151 vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 151 LLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHhhc
Confidence 57999999999999999987743
No 212
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.22 E-value=0.013 Score=56.07 Aligned_cols=24 Identities=38% Similarity=0.343 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+.|+|..|+|||+||+++++....
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 458999999999999999987653
No 213
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.20 E-value=0.011 Score=56.28 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+.|+|..|+||||||+.+.+...
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 56999999999999999998764
No 214
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.20 E-value=0.018 Score=57.31 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=40.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCeEEEEEeCCCcCHHHHHHHHHHHhCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEK----LFDQVVFVLKSSTANVEKIQDEIAEQLGL 56 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 56 (629)
++.|+|..|+||||||..++....... .-..++||+....|+.+.+.+ ++..++.
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~ 182 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNV 182 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 467999999999999999988743311 235788999988888776654 4455543
No 215
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.17 E-value=0.0061 Score=60.86 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+.++|..|+||||+|+.+.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 57899999999999999998854
No 216
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.16 E-value=0.007 Score=62.85 Aligned_cols=23 Identities=43% Similarity=0.398 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|.|+|..|+|||+||+++.+...
T Consensus 52 vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 56999999999999999998764
No 217
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.16 E-value=0.0015 Score=56.08 Aligned_cols=22 Identities=14% Similarity=-0.000 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|-|+|..|+|||++|+++.+..
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTT
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 5699999999999999997654
No 218
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.16 E-value=0.005 Score=61.06 Aligned_cols=85 Identities=16% Similarity=0.146 Sum_probs=48.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc-CCCCeEEEEEeCCCcC-HHHHHHHHHHHhCCcccCCCHHHH------HHHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE-KLFDQVVFVLKSSTAN-VEKIQDEIAEQLGLELCKGTESER------ARTLFDQ 73 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~~~------~~~l~~~ 73 (629)
++|+|..|+|||||++.+.+....+ ..+++ +++-+.+... +.++.+++-..+-.....+..... .-.+.++
T Consensus 177 ~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~AEy 255 (422)
T 3ice_A 177 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKR 255 (422)
T ss_dssp EEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999998876543 12333 4577776543 444443320000001112222111 1122333
Q ss_pred H--cCCcEEEEEcCCC
Q 047700 74 L--WKEKILIILDDIW 87 (629)
Q Consensus 74 l--~~k~~LlVlDdv~ 87 (629)
+ +|+.+|+++||+-
T Consensus 256 frd~G~dVLil~DslT 271 (422)
T 3ice_A 256 LVEHKKDVIILLDSIT 271 (422)
T ss_dssp HHHTSCEEEEEEECHH
T ss_pred HHhcCCCEEEEEeCch
Confidence 3 3999999999993
No 219
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.15 E-value=0.027 Score=54.46 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=53.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCccc------CCCHHHHHHHHHHHH-
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELC------KGTESERARTLFDQL- 74 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~l- 74 (629)
+-|+|..|+||||||-.+......++.=..++||+....++.. .+++++.+.. ..+.++....+.+.+
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~ 105 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQLD 105 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHH
Confidence 5689999999999998877665543112467899988888754 2677765422 223333312233333
Q ss_pred --c-CCcEEEEEcCCCC
Q 047700 75 --W-KEKILIILDDIWA 88 (629)
Q Consensus 75 --~-~k~~LlVlDdv~~ 88 (629)
+ ++.-++|+|-|..
T Consensus 106 ~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 106 AIERGEKVVVFIDSLGN 122 (333)
T ss_dssp TCCTTCCEEEEEECSTT
T ss_pred HhhccCceEEEEecccc
Confidence 3 6788999999954
No 220
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.13 E-value=0.0075 Score=58.87 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+.|+|..|+||||+|+++.+...
T Consensus 57 vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 57 LLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp EEEESSSSSCHHHHHHHHHHHTT
T ss_pred EEEECcCCCCHHHHHHHHHHHhC
Confidence 57899999999999999988753
No 221
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.12 E-value=0.017 Score=56.38 Aligned_cols=97 Identities=14% Similarity=0.008 Sum_probs=57.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc--CCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE--KLFDQVVFVLKSS-TANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEK 78 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~--~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~ 78 (629)
.-++|..|+||||+|+.+.+.-... .|.+. ..++.+. ...+.++ +++.+.+...+. .+++
T Consensus 21 ~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p~---------------~~~~ 83 (305)
T 2gno_A 21 ILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSPE---------------LYTR 83 (305)
T ss_dssp EEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCCS---------------SSSS
T ss_pred EEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhccc---------------cCCc
Confidence 4589999999999999998752111 13333 4454432 2333333 334444432211 2567
Q ss_pred EEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeeccc
Q 047700 79 ILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQ 115 (629)
Q Consensus 79 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~ 115 (629)
-++|+|+++.. ...+.+...+......+.+|++|.+.
T Consensus 84 kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 84 KYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp EEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred eEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 78999999765 34555666554444567777777554
No 222
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.00 E-value=0.033 Score=55.01 Aligned_cols=86 Identities=24% Similarity=0.342 Sum_probs=54.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc----CCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcc----------cCCCHH--
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE----KLFDQVVFVLKSSTANVEKIQDEIAEQLGLEL----------CKGTES-- 64 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----------~~~~~~-- 64 (629)
++.|+|..|+||||||..+....... +.-..++|++....|+.+.+.+ +++.++... ...+.+
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~~~ 187 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTDHQ 187 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHHHH
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHHHH
Confidence 46799999999999999988764322 1124688999988888776654 455554321 111222
Q ss_pred -HHHHHHHHHHc--CCcEEEEEcCCC
Q 047700 65 -ERARTLFDQLW--KEKILIILDDIW 87 (629)
Q Consensus 65 -~~~~~l~~~l~--~k~~LlVlDdv~ 87 (629)
+....+...++ .+.-+||+|.+.
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 22344444554 456788888883
No 223
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.98 E-value=0.0073 Score=59.37 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=26.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS 39 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 39 (629)
+.++|..|+|||++|+.+.+..... -...+.++++.
T Consensus 50 ~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~ 85 (311)
T 4fcw_A 50 FLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTE 85 (311)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGG
T ss_pred EEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccc
Confidence 6799999999999999999876432 12245566654
No 224
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.96 E-value=0.026 Score=56.18 Aligned_cols=81 Identities=21% Similarity=0.236 Sum_probs=53.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCccc------CCCHHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELC------KGTESERARTLFDQL 74 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~l 74 (629)
++.|+|.+|+||||||..+....... =..++|++....++.. .++.++.... ..+.++....+....
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 47899999999999999998776543 2467899988777653 2455553321 123334444444444
Q ss_pred c-CCcEEEEEcCCCC
Q 047700 75 W-KEKILIILDDIWA 88 (629)
Q Consensus 75 ~-~k~~LlVlDdv~~ 88 (629)
+ .+.-+||+|.+..
T Consensus 136 ~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 136 RSGALDIIVIDSVAA 150 (349)
T ss_dssp TTTCCSEEEEECGGG
T ss_pred hcCCCCEEEEcChHh
Confidence 3 4567899999853
No 225
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.96 E-value=0.025 Score=56.41 Aligned_cols=80 Identities=21% Similarity=0.291 Sum_probs=51.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCccc------CCCHHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELC------KGTESERARTLFDQL 74 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~l 74 (629)
++.|.|.+|+||||||..+.......+ ..++||+....++.. .+..++.... ..+.++....+....
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 468999999999999999887766442 468899998877743 2455554321 112333333333333
Q ss_pred c-CCcEEEEEcCCC
Q 047700 75 W-KEKILIILDDIW 87 (629)
Q Consensus 75 ~-~k~~LlVlDdv~ 87 (629)
+ ++.-+||+|.+.
T Consensus 138 ~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 138 RSGAVDVIVVDSVA 151 (356)
T ss_dssp HHTCCSEEEEECGG
T ss_pred hccCCCEEEEcCHH
Confidence 2 556689999984
No 226
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.93 E-value=0.032 Score=55.82 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=53.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCccc------CCCHHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELC------KGTESERARTLFDQL 74 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~l 74 (629)
++-|+|.+|+||||||..+....... -..++||+....++.. .+..++.+.. ..+.++....+.+..
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 46789999999999998888776543 2478899988777654 2445544311 123444445555544
Q ss_pred c-CCcEEEEEcCCCC
Q 047700 75 W-KEKILIILDDIWA 88 (629)
Q Consensus 75 ~-~k~~LlVlDdv~~ 88 (629)
+ ++.-+||+|.+..
T Consensus 149 ~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAA 163 (366)
T ss_dssp TTTCCSEEEEECTTT
T ss_pred hcCCCCEEEEeChHH
Confidence 4 4556899999853
No 227
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.76 E-value=0.041 Score=56.38 Aligned_cols=85 Identities=21% Similarity=0.324 Sum_probs=52.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhC--C-----cccCCCHHHH------H
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLG--L-----ELCKGTESER------A 67 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~--~-----~~~~~~~~~~------~ 67 (629)
++|+|..|+||||||+.+..+...+ +-+..+++-+.+.. ...++.+++...-. . ....+..... .
T Consensus 154 ~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~ 232 (473)
T 1sky_E 154 IGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTG 232 (473)
T ss_dssp EEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHH
Confidence 6899999999999999999887654 22455677777765 35666665643310 0 0111221111 1
Q ss_pred HHHHHHH---cCCcEEEEEcCCC
Q 047700 68 RTLFDQL---WKEKILIILDDIW 87 (629)
Q Consensus 68 ~~l~~~l---~~k~~LlVlDdv~ 87 (629)
-.+.+++ +|+++|+++||+-
T Consensus 233 ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 233 LTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHhcCCcEEEEeccHH
Confidence 1223332 5899999999993
No 228
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.75 E-value=0.019 Score=55.18 Aligned_cols=65 Identities=23% Similarity=0.264 Sum_probs=40.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCH--HHHHHHHHHHhCCcccCCCHHHHHHHHHHHH-cCCc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANV--EKIQDEIAEQLGLELCKGTESERARTLFDQL-WKEK 78 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~k~ 78 (629)
+.++|..|+||||||+.++..... ..+.+..+.-.+. .+. ...+..+.+.. ....
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~-----------------~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGES-----------------ERAVRQVFQRAKNSAP 104 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHH-----------------HHHHHHHHHHHHHTCS
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHH-----------------HHHHHHHHHHHHhcCC
Confidence 679999999999999999987543 3445543322110 000 11223333333 3567
Q ss_pred EEEEEcCCCC
Q 047700 79 ILIILDDIWA 88 (629)
Q Consensus 79 ~LlVlDdv~~ 88 (629)
.++++|+++.
T Consensus 105 ~i~~~Deid~ 114 (274)
T 2x8a_A 105 CVIFFDEVDA 114 (274)
T ss_dssp EEEEEETCTT
T ss_pred CeEeeehhhh
Confidence 8999999964
No 229
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.72 E-value=0.031 Score=57.39 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=57.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCc--------------ccCCCHHH-
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGLE--------------LCKGTESE- 65 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~--------------~~~~~~~~- 65 (629)
++|.|.+|+|||+|++.+.++... ++-+.++++-+.+.. .+.++.+++...-..+ ..++....
T Consensus 168 ~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R 246 (498)
T 1fx0_B 168 IGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGAR 246 (498)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHHH
T ss_pred EEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHHH
Confidence 689999999999999999988643 245788899888866 4678888877542111 11112111
Q ss_pred -----HHHHHHHHHc---CCcEEEEEcCC
Q 047700 66 -----RARTLFDQLW---KEKILIILDDI 86 (629)
Q Consensus 66 -----~~~~l~~~l~---~k~~LlVlDdv 86 (629)
..-.+.++++ |+.+|+++||+
T Consensus 247 ~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 247 MRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp TTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 1234445554 78999999998
No 230
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.71 E-value=0.059 Score=55.10 Aligned_cols=84 Identities=23% Similarity=0.335 Sum_probs=56.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCc-------------ccCCCHHHH-
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGLE-------------LCKGTESER- 66 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------------~~~~~~~~~- 66 (629)
++|.|..|+|||+|++.+.+.... ++-+.++++-+.+.. .+.++.+++...-..+ ..++.....
T Consensus 156 ~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~ 234 (482)
T 2ck3_D 156 IGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARA 234 (482)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHH
T ss_pred eeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHHH
Confidence 689999999999999999988643 234677888888875 4678888887652211 111222111
Q ss_pred -----HHHHHHHH---cCCcEEEEEcCC
Q 047700 67 -----ARTLFDQL---WKEKILIILDDI 86 (629)
Q Consensus 67 -----~~~l~~~l---~~k~~LlVlDdv 86 (629)
.-.+.+++ +|+.+|+++||+
T Consensus 235 ~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 235 RVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp HHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 12333333 489999999998
No 231
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.64 E-value=0.038 Score=54.54 Aligned_cols=85 Identities=21% Similarity=0.302 Sum_probs=53.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc------------CCC--CeEEEEEeCCCcCHHHHHHHHHHHhCCcc--------
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE------------KLF--DQVVFVLKSSTANVEKIQDEIAEQLGLEL-------- 58 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~------------~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-------- 58 (629)
++.|+|..|+||||+|..++...... +.. ..++|++....|+.+.+.+ +++.++...
T Consensus 100 i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~ 178 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDNTF 178 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcCEE
Confidence 46799999999999999988764211 111 4678999988888777764 345554321
Q ss_pred --cCCCHH---HHHHHHHHHHcC--CcEEEEEcCC
Q 047700 59 --CKGTES---ERARTLFDQLWK--EKILIILDDI 86 (629)
Q Consensus 59 --~~~~~~---~~~~~l~~~l~~--k~~LlVlDdv 86 (629)
...+.+ +....+.+.++. +.-+||+|.+
T Consensus 179 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 179 VARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp EEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred EEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 111222 123344455543 4567888887
No 232
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.59 E-value=0.022 Score=47.65 Aligned_cols=53 Identities=23% Similarity=0.257 Sum_probs=34.8
Q ss_pred EEeccCCCCC--CCCCCCCCCCcchhccCCccEEEecCCcccccchh-hhcccCCcEEEcCCcCC
Q 047700 274 AVSLNDIEIG--VLPKGLEYPQLEFFWMSKLRGLALSKMQLLSLPQS-VHLLSNLQTLCLDQCVL 335 (629)
Q Consensus 274 ~L~l~~~~~~--~lp~~~~~~~l~~l~~~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l 335 (629)
.++.+++.+. .+|..+ .++|++|+|++|.++.+|.. |..+++|++|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---------p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---------PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---------CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC---------CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666666666 777554 45677777777777777643 55666777777766653
No 233
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.59 E-value=0.028 Score=56.97 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=38.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh----cCCCCeEEEEEeCCCcCHHHHHHHHHHHhCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK----EKLFDQVVFVLKSSTANVEKIQDEIAEQLGL 56 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 56 (629)
++.|+|..|+||||||..++-.... .+.-..++|++....++...+.+ +++.++.
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~-~a~~~gl 238 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS-IAQRFGL 238 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHH-HHHHcCC
Confidence 4789999999999999977644322 11345688998877776655433 5666553
No 234
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.57 E-value=0.0067 Score=53.75 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|+|+.|+||||+|+.+.....
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987643
No 235
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.55 E-value=0.012 Score=52.86 Aligned_cols=106 Identities=12% Similarity=0.088 Sum_probs=59.8
Q ss_pred cCCccEEEecCC-ccc-----ccchhhhcccCCcEEEcCCcCCCCc------ccccCccccceeeccCCCCc-----cCc
Q 047700 299 MSKLRGLALSKM-QLL-----SLPQSVHLLSNLQTLCLDQCVLGDI------SIIGNLEKLENLSLVDSDIE-----WLP 361 (629)
Q Consensus 299 ~~~L~~L~l~~~-~~~-----~lp~~l~~l~~L~~L~l~~~~l~~~------~~i~~l~~L~~L~l~~~~l~-----~lp 361 (629)
-+.|+.|+|+++ .+. .+.+.+..-..|+.|+|++|.+.+. ..+..-+.|++|+|++|.|. .+-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 356777777764 554 2344455556777777777777651 22334466777777777765 233
Q ss_pred hhhhcCccccEEeecCCCC--CCccC----hhhhhcCccCceEEecccc
Q 047700 362 NEIGELTQLRLLDLSSCWN--LKVIP----PNVISKLTQLEELYMGNTF 404 (629)
Q Consensus 362 ~~i~~l~~L~~L~l~~~~~--l~~~p----~~~i~~l~~L~~L~l~~~~ 404 (629)
..+..-+.|+.|++++|.. ++.-. ..++..-++|..|+++.+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3444556678888775421 22111 1123444566667665543
No 236
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.54 E-value=0.008 Score=55.55 Aligned_cols=110 Identities=14% Similarity=0.093 Sum_probs=62.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccC---CCHHHHHHHHHHHHcCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCK---GTESERARTLFDQLWKE 77 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~k 77 (629)
++.|+|..|+||||+|-.+..+.... -..++.+...... . ....|+++++..... ....+..+.+.+.+.+.
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~ 88 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFND 88 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCC
Confidence 35789999999999998888887654 2234444333321 1 222445555543211 12233444444444434
Q ss_pred c-EEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccccc
Q 047700 78 K-ILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 78 ~-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
+ -+||+|.+..- ++.+.+.. +.+ .|-.|++|-++.+..
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~df~ 129 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKNFK 129 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBCTT
T ss_pred CCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccccc
Confidence 4 49999999743 33333322 222 267899999977653
No 237
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.51 E-value=0.049 Score=52.86 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=27.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKS 38 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 38 (629)
|++|+|.+|+||||++..+......+.. ..+..++..
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D 143 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTD 143 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecC
Confidence 5889999999999999999887764222 245556553
No 238
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.019 Score=58.72 Aligned_cols=97 Identities=22% Similarity=0.271 Sum_probs=54.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHc-CCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLW-KEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~k~~L 80 (629)
|-++|+.|.|||+||+++++..... | +.|..+.-.+ .+.+. .......++...+ ..+.+
T Consensus 218 vLL~GPPGtGKTllAkAiA~e~~~~--~---~~v~~s~l~s--------------k~~Ge-se~~ir~~F~~A~~~~P~I 277 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAATIGAN--F---IFSPASGIVD--------------KYIGE-SARIIREMFAYAKEHEPCI 277 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCE--E---EEEEGGGTCC--------------SSSSH-HHHHHHHHHHHHHHSCSEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCC--E---EEEehhhhcc--------------ccchH-HHHHHHHHHHHHHhcCCce
Confidence 5689999999999999999987643 2 2343332111 11111 1122233333333 67899
Q ss_pred EEEcCCCCCc--------c--------hhhhhhccC--CCCCCcEEEEeecccccc
Q 047700 81 IILDDIWANI--------D--------LETVGILFG--GAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 81 lVlDdv~~~~--------~--------~~~l~~~~~--~~~~gs~ilvTTR~~~v~ 118 (629)
|++|+++... . ...+...+. ....+..||.||-..+.+
T Consensus 278 ifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 278 IFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp EEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred eeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 9999997430 0 112333332 223455777777766655
No 239
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.49 E-value=0.0066 Score=53.71 Aligned_cols=24 Identities=25% Similarity=0.112 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|.|.|+.|+||||+|+.+.....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987754
No 240
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.47 E-value=0.0067 Score=54.05 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|.|.|+.|+||||+|+.+.....
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999988754
No 241
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.43 E-value=0.41 Score=48.13 Aligned_cols=98 Identities=10% Similarity=0.127 Sum_probs=47.5
Q ss_pred cCCccEEEecCCcccccch-hhhcccCCcEEEcCCcCCCCc--ccccCccccceeeccCCCCccCchhhhcCccccEEee
Q 047700 299 MSKLRGLALSKMQLLSLPQ-SVHLLSNLQTLCLDQCVLGDI--SIIGNLEKLENLSLVDSDIEWLPNEIGELTQLRLLDL 375 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~~--~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 375 (629)
|.+|+.++|..+ ++.++. .|..+ +|+.+.+..+ ++.+ ..+.. .+|+.+.+..+ ++.+....-...+|..+.+
T Consensus 68 C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~ 142 (379)
T 4h09_A 68 CYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPGA-TTEIGNYIFYNSSVKRIVI 142 (379)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECCTT-CCEECTTTTTTCCCCEEEE
T ss_pred CCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCCCc-cccccccccccceeeeeec
Confidence 677777777543 554443 24343 4555555432 2221 12222 35677766543 3333322222234555555
Q ss_pred cCCCCCCccChhhhhcCccCceEEeccc
Q 047700 376 SSCWNLKVIPPNVISKLTQLEELYMGNT 403 (629)
Q Consensus 376 ~~~~~l~~~p~~~i~~l~~L~~L~l~~~ 403 (629)
.. .+..+....+....+++...+...
T Consensus 143 ~~--~v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 143 PK--SVTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp CT--TCCEECSCTTTTCTTCCEEEECTT
T ss_pred cc--eeeccccchhcccccccccccccc
Confidence 43 344444444566666766665544
No 242
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.42 E-value=0.019 Score=54.49 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+.|+|..|+||||||+.+++...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999998764
No 243
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.41 E-value=0.0084 Score=54.72 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|.|+.|+||||+|+.+....
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 244
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.39 E-value=0.042 Score=58.41 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+.++|..|+||||||+.+.....
T Consensus 111 vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 111 LCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 68999999999999999998874
No 245
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.019 Score=57.75 Aligned_cols=68 Identities=25% Similarity=0.294 Sum_probs=40.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHc-CCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLW-KEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~k~~L 80 (629)
|-++|+.|.|||.||+++++..... | +.|..+.-. ..+.+. .+..+..+++..+ ..+..
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~~~--f---~~v~~s~l~--------------sk~vGe-se~~vr~lF~~Ar~~aP~I 244 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTDCK--F---IRVSGAELV--------------QKYIGE-GSRMVRELFVMAREHAPSI 244 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHTCE--E---EEEEGGGGS--------------CSSTTH-HHHHHHHHHHHHHHTCSEE
T ss_pred eEEeCCCCCCHHHHHHHHHHhhCCC--c---eEEEhHHhh--------------ccccch-HHHHHHHHHHHHHHhCCce
Confidence 4689999999999999999987654 2 233332211 111111 1122333333333 66899
Q ss_pred EEEcCCCCC
Q 047700 81 IILDDIWAN 89 (629)
Q Consensus 81 lVlDdv~~~ 89 (629)
|++|+++..
T Consensus 245 IFiDEiDai 253 (405)
T 4b4t_J 245 IFMDEIDSI 253 (405)
T ss_dssp EEEESSSCC
T ss_pred Eeeecchhh
Confidence 999999743
No 246
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.32 E-value=0.007 Score=54.66 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=20.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
+++|+|+.|+|||||++.+...
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999765
No 247
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.30 E-value=0.027 Score=54.32 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+.|+|..|+||||||+.++....
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 57999999999999999998764
No 248
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.24 E-value=0.0068 Score=60.03 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=47.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc-CCCCeEEEEEeCCCcC-HHHHHHHHHHHhCCcccCCCHHHH------HHHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE-KLFDQVVFVLKSSTAN-VEKIQDEIAEQLGLELCKGTESER------ARTLFDQ 73 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~~~------~~~l~~~ 73 (629)
++|+|..|+|||+|++.|.+....+ ..+.+ +++-+.+... +.++.+++...+-....++..... .-.+.++
T Consensus 178 ~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~~~a~~altiAEy 256 (427)
T 3l0o_A 178 GMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMAKR 256 (427)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999886543 12333 4677766532 222222221000001111111111 1223333
Q ss_pred H--cCCcEEEEEcCCC
Q 047700 74 L--WKEKILIILDDIW 87 (629)
Q Consensus 74 l--~~k~~LlVlDdv~ 87 (629)
+ +|+.+|+++||+-
T Consensus 257 frd~G~dVLil~DslT 272 (427)
T 3l0o_A 257 LVEFNYDVVILLDSLT 272 (427)
T ss_dssp HHHTTCEEEEEEECHH
T ss_pred HHHcCCCEEEecccch
Confidence 3 4899999999993
No 249
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.23 E-value=0.0085 Score=53.58 Aligned_cols=23 Identities=13% Similarity=0.420 Sum_probs=20.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+++|+|+.|+|||||++.+....
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999998764
No 250
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.21 E-value=0.048 Score=51.36 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=25.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh-hcCCCCeEEEEEeC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK-KEKLFDQVVFVLKS 38 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~-~~~~F~~~~wv~vs 38 (629)
+++|+|..|+|||||++.+..... .. -...+++...
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~ 68 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE 68 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEcc
Confidence 479999999999999999985433 22 2345566543
No 251
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.21 E-value=0.009 Score=54.40 Aligned_cols=24 Identities=33% Similarity=0.246 Sum_probs=21.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|.|+|+.|+||||+|+.+.....
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999988763
No 252
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.20 E-value=0.01 Score=53.32 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+++|+|..|+|||||++.+.....
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999987754
No 253
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.20 E-value=0.0021 Score=57.72 Aligned_cols=106 Identities=13% Similarity=-0.023 Sum_probs=52.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCccc---CCCHHHHHHHHHHHHcCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELC---KGTESERARTLFDQLWKE 77 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~l~~~l~~k 77 (629)
++.|+|..|+||||+|..+..+....+ . .++.+..... .+.-...+...++.... ..+. ..+.+.+.++
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g-~-~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~----~~~~~~~~~~ 76 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGK-K-KVAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERP----EEMRKYIEED 76 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-C-EEEEEEEC-------CCCEECC----CEECEEESSG----GGGGGGCCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEeeccc--cccCcccEEecCCCceeeEEECCH----HHHHHHhcCC
Confidence 367999999999999976666654332 2 2333332211 10000011111111100 0111 1223333345
Q ss_pred cEEEEEcCCCCC-cchhhhhhccCCCCCCcEEEEeecccc
Q 047700 78 KILIILDDIWAN-IDLETVGILFGGAHRGCKILLTPRYQN 116 (629)
Q Consensus 78 ~~LlVlDdv~~~-~~~~~l~~~~~~~~~gs~ilvTTR~~~ 116 (629)
.-+|++|.++.. .+|-.....+.+. |..|++|.++.+
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~--~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDR--GIDVFCAGLDLT 114 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHT--TCEEEEEEESBC
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHC--CCCEEEEeeccc
Confidence 669999999765 3344333322222 778999988665
No 254
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.022 Score=58.02 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
|-++|+.|+|||+||+++++....
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 568999999999999999998764
No 255
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.13 E-value=0.0092 Score=54.53 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+++|+|..|+|||||++.+....
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 48999999999999999998763
No 256
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.12 E-value=0.0094 Score=54.32 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+|+|+|+.|+||||+|+.+......
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~ 51 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQ 51 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5889999999999999999888763
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.09 E-value=0.0087 Score=54.97 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+|+|+|..|+|||||++.+..-...
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999887654
No 258
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.08 E-value=0.027 Score=47.08 Aligned_cols=54 Identities=20% Similarity=0.285 Sum_probs=32.2
Q ss_pred eeeccCCCCc--cCchhhhcCccccEEeecCCCCCCccChhhhhcCccCceEEeccccc
Q 047700 349 NLSLVDSDIE--WLPNEIGELTQLRLLDLSSCWNLKVIPPNVISKLTQLEELYMGNTFV 405 (629)
Q Consensus 349 ~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~i~~l~~L~~L~l~~~~~ 405 (629)
.++.++++++ .+|..+. ++|++|+|++| .+..+|.+.+..+++|+.|++.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 4555555555 5664432 35666666665 56666666566666666666666643
No 259
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.06 E-value=0.01 Score=52.93 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=19.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLF 21 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~ 21 (629)
+|.|.|+.|+||||+|+.+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999999987
No 260
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.06 E-value=0.011 Score=54.00 Aligned_cols=23 Identities=43% Similarity=0.589 Sum_probs=20.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|+|+.|+||||+|+.+....
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47899999999999999998765
No 261
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.05 E-value=0.042 Score=54.79 Aligned_cols=53 Identities=28% Similarity=0.393 Sum_probs=35.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc---CCCC-eEEEEEeCCCcCHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE---KLFD-QVVFVLKSSTANVEKIQDEIAEQL 54 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~~~~~~i~~~l 54 (629)
++.|+|..|+|||||+..+....... +... .++||+....+....+. .++...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~-~i~q~~ 189 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIR-EIAQNR 189 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHH-HHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHH-HHHHHc
Confidence 47899999999999999998775321 1112 34899886666544433 244433
No 262
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.03 E-value=0.013 Score=52.24 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|.|+|+.|+||||+|+.+.+...
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987753
No 263
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.01 E-value=0.011 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|+|+.|+||||+|+.+....
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 47899999999999999998764
No 264
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.01 E-value=0.015 Score=61.64 Aligned_cols=79 Identities=20% Similarity=0.171 Sum_probs=42.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHH--HcCCcE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQ--LWKEKI 79 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~--l~~k~~ 79 (629)
+.|+|..|+||||+|+.+++... + .++.++++...... +....+.......... +......+. ..+++.
T Consensus 80 lLL~GppGtGKTtla~~la~~l~----~-~~i~in~s~~~~~~-~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 150 (516)
T 1sxj_A 80 AMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNASDVRSKT-LLNAGVKNALDNMSVV---GYFKHNEEAQNLNGKHF 150 (516)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT----C-EEEEECTTSCCCHH-HHHHTGGGGTTBCCST---TTTTC----CCSSTTSE
T ss_pred EEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeCCCcchHH-HHHHHHHHHhccccHH---HHHhhhhhhhhccCCCe
Confidence 57899999999999999998863 2 23445555443333 2222222221110000 000000001 126789
Q ss_pred EEEEcCCCCC
Q 047700 80 LIILDDIWAN 89 (629)
Q Consensus 80 LlVlDdv~~~ 89 (629)
+|++|+++..
T Consensus 151 vliIDEid~l 160 (516)
T 1sxj_A 151 VIIMDEVDGM 160 (516)
T ss_dssp EEEECSGGGC
T ss_pred EEEEECCCcc
Confidence 9999999754
No 265
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.00 E-value=0.013 Score=53.50 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=20.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|.|+|+.|+|||||++.+....
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999998765
No 266
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.98 E-value=0.014 Score=51.82 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|.|.|+.|+||||+|+.+.....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999987754
No 267
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.95 E-value=0.011 Score=54.36 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|+|..|+|||||++.+..-..
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988644
No 268
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.95 E-value=0.011 Score=53.17 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLF 21 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~ 21 (629)
+++|+|+.|+|||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 269
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.91 E-value=0.011 Score=53.92 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=19.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLF 21 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~ 21 (629)
+|+|+|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 489999999999999999987
No 270
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.90 E-value=0.013 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|.|+|+.|+||||+|+.+.....
T Consensus 8 i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987753
No 271
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.90 E-value=0.026 Score=57.62 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
|-++|+.|.|||.||+++++.....
T Consensus 246 ILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 246 ILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp EEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred eEeeCCCCCcHHHHHHHHHhccCCC
Confidence 4689999999999999999987643
No 272
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.90 E-value=0.02 Score=58.36 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
|-++|++|.|||.||+++++....
T Consensus 218 vLLyGPPGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQTNA 241 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTC
T ss_pred eEEECcCCCCHHHHHHHHHHHhCC
Confidence 568999999999999999998764
No 273
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.89 E-value=0.015 Score=52.10 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|.|.|+.|+||||+|+.+.....
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988654
No 274
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.88 E-value=0.0091 Score=52.86 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=17.7
Q ss_pred CEEEEcCCCCcHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVL 20 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~ 20 (629)
+++|+|..|+|||||++.++
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47999999999999999644
No 275
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.034 Score=56.18 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
|-++|+.|.|||.||+++++.....
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e~~~~ 243 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQTSAT 243 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHHHTCE
T ss_pred CceECCCCchHHHHHHHHHHHhCCC
Confidence 5689999999999999999987643
No 276
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.86 E-value=0.014 Score=51.92 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
++|+|..|+|||||++.+.....+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999988653
No 277
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.85 E-value=0.012 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+++|+|+.|+||||+|+.+....
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47999999999999999998765
No 278
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.81 E-value=0.014 Score=52.64 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|.|.|+.|+||||+|+.+.+...
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988765
No 279
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.80 E-value=0.038 Score=54.89 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|-|+|..|+|||++|+++.+...
T Consensus 58 vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECcCCCCHHHHHHHHHHHhC
Confidence 67999999999999999987753
No 280
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.79 E-value=0.016 Score=52.76 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+++|+|..|+|||||++.+....
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998754
No 281
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.78 E-value=0.014 Score=51.33 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|.|+.|+||||+|+.+.+...
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999988754
No 282
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.77 E-value=0.061 Score=54.64 Aligned_cols=86 Identities=22% Similarity=0.257 Sum_probs=54.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcC-CCC-eEEEEEeCCCc-CHHHHHHHHHHH--hCC-----cccCCCHHHH-----
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEK-LFD-QVVFVLKSSTA-NVEKIQDEIAEQ--LGL-----ELCKGTESER----- 66 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~-~~~~~~~~i~~~--l~~-----~~~~~~~~~~----- 66 (629)
++|.|..|+|||+|+.++.+.....+ +=+ .++++-+.+.. .+.++.+++... +.. ...++.....
T Consensus 154 ~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~ 233 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPR 233 (465)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHH
T ss_pred EEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHH
Confidence 57999999999999999998876421 111 56677777755 467777776543 111 1122222221
Q ss_pred -HHHHHHHHc---CCcEEEEEcCCC
Q 047700 67 -ARTLFDQLW---KEKILIILDDIW 87 (629)
Q Consensus 67 -~~~l~~~l~---~k~~LlVlDdv~ 87 (629)
.-.+.++++ |+.+|+++||+-
T Consensus 234 ~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 234 MALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEcChH
Confidence 224455543 799999999983
No 283
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.75 E-value=0.014 Score=54.30 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|+|..|+||||+|+.+....
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998764
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.73 E-value=0.014 Score=52.57 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+|.|.|+.|+||||+|+.+.+....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999987653
No 285
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.72 E-value=0.015 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 479999999999999999988754
No 286
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.71 E-value=0.018 Score=50.86 Aligned_cols=24 Identities=29% Similarity=0.210 Sum_probs=21.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|.|.|+.|+||||+|+.+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988754
No 287
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.71 E-value=0.015 Score=52.41 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=20.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
+|+|.|+.|+||||+|+.+.+.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999875
No 288
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.70 E-value=0.014 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|+|+.|+|||||++.+.....
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 489999999999999999987643
No 289
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.70 E-value=0.1 Score=50.68 Aligned_cols=85 Identities=21% Similarity=0.191 Sum_probs=46.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCH--HHHHHHHHHHhCCcc----cCCCHHHH-HHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANV--EKIQDEIAEQLGLEL----CKGTESER-ARTLFDQ 73 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~----~~~~~~~~-~~~l~~~ 73 (629)
|++|+|.+|+||||++..+.......+ ..+.+++.. .+.. .+-++..++..+... ...+.... .+.+...
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 588999999999999999988776532 234555543 2222 122233444444321 11122221 1233333
Q ss_pred HcCCcEEEEEcCCCC
Q 047700 74 LWKEKILIILDDIWA 88 (629)
Q Consensus 74 l~~k~~LlVlDdv~~ 88 (629)
+....-++++|-...
T Consensus 183 ~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 183 LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCc
Confidence 444455777786643
No 290
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.69 E-value=0.019 Score=50.30 Aligned_cols=26 Identities=38% Similarity=0.402 Sum_probs=22.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
+++|+|..|+|||||+.++......+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 58999999999999999999887643
No 291
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.68 E-value=0.015 Score=50.52 Aligned_cols=23 Identities=39% Similarity=0.398 Sum_probs=21.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+++|+|..|+|||||++.+..-.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57999999999999999998875
No 292
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.66 E-value=0.017 Score=53.35 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+++|+|..|+|||||++.+....
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998754
No 293
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.64 E-value=0.015 Score=54.99 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|.|..|+||||||+.+....
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998753
No 294
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.62 E-value=0.014 Score=53.31 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=19.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLF 21 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~ 21 (629)
+|+|+|+.|+||||+++.+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999965
No 295
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.60 E-value=0.02 Score=51.43 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=22.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
+|.|+|+.|+||||+|+.+.......
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999887643
No 296
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.58 E-value=0.017 Score=54.85 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|.|+|+.|+||||||+.+.....
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 478999999999999999988753
No 297
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.58 E-value=0.016 Score=52.17 Aligned_cols=23 Identities=35% Similarity=0.313 Sum_probs=20.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|.|.|+.|+||||+|+.+....
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998765
No 298
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.56 E-value=0.017 Score=51.74 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
+|+|+|+.|+||||+|+.+.+.
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999999876
No 299
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.56 E-value=0.026 Score=55.13 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|-|+|..|+|||++|+++.+..
T Consensus 28 vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 28 VLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp EEEESCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCCchHHHHHHHHHHhC
Confidence 5799999999999999998864
No 300
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.56 E-value=0.04 Score=57.55 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|-|+|..|+|||++|+++.+..
T Consensus 241 vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 241 ILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 5789999999999999998875
No 301
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.54 E-value=0.011 Score=58.90 Aligned_cols=109 Identities=14% Similarity=0.068 Sum_probs=61.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEE-EEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVV-FVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKI 79 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 79 (629)
+++|+|..|+||||+.+.+....... ...++ .+.-.-.+..... ..+..+. ... .........+...|...+=
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~-~~~v~q~--~~~-~~~~~~~~~La~aL~~~Pd 198 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESK-KCLVNQR--EVH-RDTLGFSEALRSALREDPD 198 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEE--EBT-TTBSCHHHHHHHHTTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhcc-ccceeee--eec-cccCCHHHHHHHHhhhCcC
Confidence 47899999999999999998765543 12222 2211111110000 0000000 000 0111223467778888889
Q ss_pred EEEEcCCCCCcchhhhhhccCCCCCCcEEEEeecccccc
Q 047700 80 LIILDDIWANIDLETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 80 LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
++++|++.+.+.++.+.... ..|-.|++||...+.+
T Consensus 199 villDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 199 IILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp EEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred EEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 99999998655555443332 3366799999888765
No 302
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.51 E-value=0.051 Score=50.41 Aligned_cols=44 Identities=27% Similarity=0.343 Sum_probs=31.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc---C-CCCeEEEEEeCCCcCHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE---K-LFDQVVFVLKSSTANVE 44 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~ 44 (629)
+++|+|..|+|||||++.+....... + .-..++|++-...+...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 47899999999999999998754321 1 23457888765544443
No 303
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.51 E-value=0.016 Score=56.76 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=26.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLK 37 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v 37 (629)
+|+|+|..|+||||||+.+..-......-..+..|.-
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~q 128 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTT 128 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEG
T ss_pred EEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEec
Confidence 5899999999999999999887654211123455544
No 304
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.51 E-value=0.016 Score=52.73 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+|+|.|..|+||||+|+.+......
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999876543
No 305
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.50 E-value=0.016 Score=53.12 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
+|+|+|..|+||||+|+.+...
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999764
No 306
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.48 E-value=0.017 Score=52.89 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+++|+|..|+|||||++.+..-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57999999999999999998765
No 307
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.48 E-value=0.018 Score=54.46 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|+|+.|+|||||++.+.+..
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998764
No 308
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.47 E-value=0.018 Score=54.66 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|+|+.|+||||+++.+.+...
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999987643
No 309
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.46 E-value=0.024 Score=50.93 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+++|+|..|+|||||++.+.....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 589999999999999999988765
No 310
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.45 E-value=0.15 Score=49.34 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=49.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhCCcc----cCCCHHHHHHHHHHHHc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAEQLGLEL----CKGTESERARTLFDQLW 75 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~l~ 75 (629)
+++++|.+|+||||++..+....... =..+.+++..... ...+.++......+... ...+..+......+.++
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999998877654 2345566654322 22333344455544321 11234444434444554
Q ss_pred -CCcEEEEEcCCCCC
Q 047700 76 -KEKILIILDDIWAN 89 (629)
Q Consensus 76 -~k~~LlVlDdv~~~ 89 (629)
..-=++++|-....
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 33336778875433
No 311
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.44 E-value=0.019 Score=51.87 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|.|+.|+||||+|+.+.+..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 312
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.42 E-value=0.019 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|.|+.|+||||+|+.+.+..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998764
No 313
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.40 E-value=0.14 Score=52.15 Aligned_cols=84 Identities=19% Similarity=0.208 Sum_probs=46.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHH--HHHHHHHHHhCCcc----cCCCHHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVE--KIQDEIAEQLGLEL----CKGTESERARTLFDQL 74 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~l 74 (629)
|++|+|.+|+||||++..+..-....+ ..+..++.. .+... +.++......+... ...+..+......+.+
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g--~~Vllvd~D-~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEeecc-ccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 578999999999999999988876542 234555552 23322 22333444554431 1123344433344444
Q ss_pred cCCcE-EEEEcCCC
Q 047700 75 WKEKI-LIILDDIW 87 (629)
Q Consensus 75 ~~k~~-LlVlDdv~ 87 (629)
+.+.| ++|+|-..
T Consensus 177 ~~~~~DvVIIDTaG 190 (425)
T 2ffh_A 177 RLEARDLILVDTAG 190 (425)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HHCCCCEEEEcCCC
Confidence 32333 67778654
No 314
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.39 E-value=0.019 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|.|+.|+||||+|+.+.....
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999988753
No 315
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.38 E-value=0.02 Score=50.28 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
.|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988654
No 316
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.36 E-value=0.018 Score=55.70 Aligned_cols=52 Identities=13% Similarity=0.009 Sum_probs=31.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcC-CCCeEEEEEeCCCcCHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEK-LFDQVVFVLKSSTANVEKIQDEIAE 52 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i~~ 52 (629)
+|+|+|..|+||||||+.+.......+ ....+..|....-+-.......+..
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~ 85 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNE 85 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhc
Confidence 589999999999999999987765431 1233444454332222344444443
No 317
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.35 E-value=0.02 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|.|+.|+||||+|+.+.+..
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 318
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.32 E-value=0.019 Score=50.58 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=26.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVL 36 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~ 36 (629)
+++|+|..|+|||||++.+..-....+.-.+.+.++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 479999999999999999988766543224555543
No 319
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.29 E-value=0.021 Score=51.47 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999988764
No 320
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.23 E-value=0.02 Score=52.03 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=20.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
+|+|+|+.|+||||+|+.+...
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999999775
No 321
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.22 E-value=0.016 Score=51.68 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=17.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|.|.|+.|+||||+|+.+.+...
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999987644
No 322
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.21 E-value=0.022 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|.|+.|+||||+|+.+.+..
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998763
No 323
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.19 E-value=0.023 Score=51.74 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=21.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|.|.|+.|+||||+|+.+.....
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988653
No 324
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.18 E-value=0.18 Score=48.78 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=46.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcC-HHHHHHHHHHHhCCcc----cCCCHHHHHHHHHHHH-
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTAN-VEKIQDEIAEQLGLEL----CKGTESERARTLFDQL- 74 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~l- 74 (629)
+++|+|.+|+||||+|..++.-....+ ..+.+++...... ....+.......+... ...+..+........+
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988776532 2345555533221 1122333444444321 1223444433333333
Q ss_pred cCCcEEEEEcCCC
Q 047700 75 WKEKILIILDDIW 87 (629)
Q Consensus 75 ~~k~~LlVlDdv~ 87 (629)
....=++++|---
T Consensus 178 ~~~~D~viiDtpp 190 (295)
T 1ls1_A 178 LEARDLILVDTAG 190 (295)
T ss_dssp HHTCCEEEEECCC
T ss_pred hCCCCEEEEeCCC
Confidence 2445567788763
No 325
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.15 E-value=0.026 Score=55.23 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=28.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS 39 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 39 (629)
||+|+|.|||||||.|..+.--....+ ..+.-|++..
T Consensus 50 VIAIaGKGGVGKTTtavNLA~aLA~~G--kkVllID~Dp 86 (314)
T 3fwy_A 50 VFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDP 86 (314)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred EEEEECCCccCHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 689999999999999988877766542 3466677654
No 326
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.15 E-value=0.023 Score=51.13 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|.|+.|+||||+|+.+....
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 327
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.09 E-value=0.17 Score=46.66 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+||.|+.|+||||+|+.+.+...
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred eeeECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999988764
No 328
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.09 E-value=0.025 Score=50.96 Aligned_cols=23 Identities=17% Similarity=0.485 Sum_probs=20.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|+|+.|+|||||++.+....
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999998764
No 329
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.08 E-value=0.029 Score=50.14 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|+|+.|+|||||++++..+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998774
No 330
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.06 E-value=0.024 Score=52.37 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+++|+|..|+|||||++.+.....
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 478999999999999999988754
No 331
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.05 E-value=0.025 Score=51.86 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=22.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
+|.|.|+.|+||||+|+.+.+.....
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 37899999999999999999876643
No 332
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.05 E-value=0.25 Score=50.61 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=46.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-cCHHHHHHHHHHHhCCcc----cCCCHHHHHHHHHHHHc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSST-ANVEKIQDEIAEQLGLEL----CKGTESERARTLFDQLW 75 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~l~ 75 (629)
||.|+|.+|+||||+|..+......+.. ..+.-|+.... ....+.++......+... ...+..+......+.++
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G-~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~ 180 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHK-KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSC-CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999888765412 24455665432 223333333334443321 11233333333334443
Q ss_pred -CCcEEEEEcCCC
Q 047700 76 -KEKILIILDDIW 87 (629)
Q Consensus 76 -~k~~LlVlDdv~ 87 (629)
..-=++|+|-..
T Consensus 181 ~~~~D~VIIDTpG 193 (433)
T 2xxa_A 181 LKFYDVLLVDTAG 193 (433)
T ss_dssp HTTCSEEEEECCC
T ss_pred hCCCCEEEEECCC
Confidence 233356667754
No 333
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.04 E-value=0.028 Score=52.94 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=21.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|+|+.|+||||+++.+.....
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999988654
No 334
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.02 E-value=0.026 Score=51.03 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=22.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+|+|.|..|+||||+|+.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999987644
No 335
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.99 E-value=0.024 Score=53.71 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|.|+.|+||||+|+.+.....
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 589999999999999999988643
No 336
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.98 E-value=0.1 Score=46.66 Aligned_cols=109 Identities=18% Similarity=0.057 Sum_probs=62.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC---CcCHHHHHHHHHHHhCCc---------ccCCC-------
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS---TANVEKIQDEIAEQLGLE---------LCKGT------- 62 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~~l~~~---------~~~~~------- 62 (629)
|-|++-.|.||||.|-.+.-+..-. =..+.++..-+ ......+++. +..+ +....
T Consensus 31 i~v~tG~GkGKTTaA~GlalRA~g~--G~rV~~vQF~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 31 IIVFTGNGKGKTTAAFGTAARAVGH--GKNVGVVQFIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp EEEEESSSSCHHHHHHHHHHHHHHT--TCCEEEEESSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCCCCCccHHHHHHh----CCcEEEEcccccccCCCCcHHHHHH
Confidence 5678888899999999998887643 23455554433 2233344433 3210 00000
Q ss_pred HHHHHHHHHHHHc-CCcEEEEEcCCCCC-----cchhhhhhccCCCCCCcEEEEeecccc
Q 047700 63 ESERARTLFDQLW-KEKILIILDDIWAN-----IDLETVGILFGGAHRGCKILLTPRYQN 116 (629)
Q Consensus 63 ~~~~~~~l~~~l~-~k~~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~ilvTTR~~~ 116 (629)
.........+.+. ++--|||||++-.. -..+.+...+.......-||+|+|...
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 0113345556665 45568999998322 233444444444555678999999874
No 337
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.96 E-value=0.026 Score=53.79 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|.|.|+.|+||||+|+.+.....
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998754
No 338
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.95 E-value=0.092 Score=54.71 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+-++|..|+|||++|+.+.....
T Consensus 204 ~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999998864
No 339
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.94 E-value=0.18 Score=51.87 Aligned_cols=86 Identities=13% Similarity=0.210 Sum_probs=53.7
Q ss_pred EEEEcCCCCcHHHHH-HHHHHHhhh----cCCCC-eEEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHHH-
Q 047700 2 IGVYGIGGIGKTTLM-HEVLFEAKK----EKLFD-QVVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESER- 66 (629)
Q Consensus 2 i~i~G~gG~GKTtLa-~~v~~~~~~----~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~- 66 (629)
++|.|..|+|||+|| ..|.+.... .++-+ .++++-+.+.. .+.++.+++...=..+ ..++.....
T Consensus 165 ~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 244 (510)
T 2ck3_A 165 ELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQY 244 (510)
T ss_dssp CEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHH
T ss_pred EEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHHH
Confidence 589999999999994 677777653 12344 46788888765 4677777776532111 112222111
Q ss_pred -----HHHHHHHHc--CCcEEEEEcCCC
Q 047700 67 -----ARTLFDQLW--KEKILIILDDIW 87 (629)
Q Consensus 67 -----~~~l~~~l~--~k~~LlVlDdv~ 87 (629)
.-.+.++++ |+.+|+++||+-
T Consensus 245 ~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 245 LAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 123444443 899999999983
No 340
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.91 E-value=0.017 Score=53.03 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+|+|.|..|+||||+|+.+......
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999887653
No 341
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.87 E-value=0.091 Score=53.71 Aligned_cols=85 Identities=22% Similarity=0.276 Sum_probs=55.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCC--CCeEEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHHH-----
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKL--FDQVVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESER----- 66 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 66 (629)
++|.|.+|+|||+|+++|.++....+. =+.++++-+.+.. .+.++.+++...=..+ ..++.....
T Consensus 155 ~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~ 234 (469)
T 2c61_A 155 LPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPR 234 (469)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHH
Confidence 579999999999999999998765321 1456777777765 4677777776542111 122222221
Q ss_pred -HHHHHHHHc---CCcEEEEEcCC
Q 047700 67 -ARTLFDQLW---KEKILIILDDI 86 (629)
Q Consensus 67 -~~~l~~~l~---~k~~LlVlDdv 86 (629)
.-.+.++++ |+.+|+++||+
T Consensus 235 ~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 235 MALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHhcCCeEEEEEeCH
Confidence 223344443 89999999997
No 342
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.87 E-value=0.097 Score=59.09 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+.++|.+|+||||+|+.+.+....
T Consensus 194 vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 194 PVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhc
Confidence 568999999999999999988643
No 343
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.85 E-value=0.028 Score=50.03 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+|+|.|+.|+||||+|+.+......
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4789999999999999999887644
No 344
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.85 E-value=0.026 Score=51.83 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+++|+|..|+|||||++.++.-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999997653
No 345
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.85 E-value=0.028 Score=51.49 Aligned_cols=30 Identities=20% Similarity=0.158 Sum_probs=24.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQ 31 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~ 31 (629)
+|+|.|+.|+||||+|+.+.+..... +++.
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 47999999999999999998876543 4555
No 346
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.84 E-value=0.033 Score=51.31 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|+|.|+.|+||||+|+.+....
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998765
No 347
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.82 E-value=0.028 Score=51.92 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=19.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLF 21 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~ 21 (629)
+|+|.|+.|+||||+|+.+..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999965
No 348
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.81 E-value=0.029 Score=51.54 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=24.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQ 31 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~ 31 (629)
+|+|.|+.|+||||+|+.+.+..... +++.
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 48999999999999999999876543 3454
No 349
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.78 E-value=0.034 Score=54.11 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
+++|+|.+|+||||+++.+..-....
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 58899999999999999998776643
No 350
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.77 E-value=0.035 Score=51.37 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
.|.|.|+.|+||||+|+.+.+...
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988754
No 351
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.77 E-value=0.029 Score=52.13 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|.|.|+.|+||||+|+.+.+..
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 37899999999999999998764
No 352
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.77 E-value=0.032 Score=55.37 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
.+.++|..|+||||||+.+++...
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 368999999999999999999864
No 353
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.75 E-value=0.035 Score=51.14 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|+|.|+.|+||||+|+.+....
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999997764
No 354
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.71 E-value=0.023 Score=51.96 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=20.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
+++|+|..|+|||||++.+..-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999876
No 355
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.70 E-value=0.028 Score=52.68 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=24.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||.+.+..-... ..+.+++
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~ 57 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRL 57 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---CceEEEE
Confidence 4799999999999999999765432 3455554
No 356
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.69 E-value=0.028 Score=55.00 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|+|..|+|||||++.+..-..
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999987654
No 357
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.66 E-value=0.024 Score=52.57 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=24.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||++.+..-... ..+.+++
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~i~~ 63 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDAP---TEGKVFL 63 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSCC---SEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---CceEEEE
Confidence 4799999999999999999765432 3456655
No 358
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.65 E-value=0.09 Score=53.40 Aligned_cols=86 Identities=20% Similarity=0.226 Sum_probs=53.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc--------CCCC-eEEEEEeCCCc-CHHHHHHHHHHH--hCC-----cccCCCHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE--------KLFD-QVVFVLKSSTA-NVEKIQDEIAEQ--LGL-----ELCKGTES 64 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~~~~~i~~~--l~~-----~~~~~~~~ 64 (629)
++|.|.+|+|||+|+.++.+..... .+=+ .++++-+.+.. .+.++.+++... +.. ...++...
T Consensus 150 ~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~ 229 (464)
T 3gqb_B 150 LPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTI 229 (464)
T ss_dssp CCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTH
T ss_pred EEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHH
Confidence 5799999999999999999886642 1122 55677777654 467777765442 111 11122221
Q ss_pred H------HHHHHHHHHc---CCcEEEEEcCCC
Q 047700 65 E------RARTLFDQLW---KEKILIILDDIW 87 (629)
Q Consensus 65 ~------~~~~l~~~l~---~k~~LlVlDdv~ 87 (629)
. ..-.+.++++ |+.+|+++||+-
T Consensus 230 ~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 230 ERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1 1224445544 799999999983
No 359
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.64 E-value=0.028 Score=52.57 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=24.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||++.+..-... ..+.+++
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~I~~ 64 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYI 64 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC---CceEEEE
Confidence 4799999999999999999755432 3556665
No 360
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.63 E-value=0.12 Score=53.72 Aligned_cols=82 Identities=16% Similarity=0.228 Sum_probs=52.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcC-HHHHHHHHHH----HhC-----C-----cccCCCHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTAN-VEKIQDEIAE----QLG-----L-----ELCKGTESER 66 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~----~l~-----~-----~~~~~~~~~~ 66 (629)
++|.|..|+|||+|++.+.+... -+.++++-+.+... +.++.+++-+ ..+ . ...++.....
T Consensus 230 ~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~p~~~r 305 (588)
T 3mfy_A 230 AAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAR 305 (588)
T ss_dssp EEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTTSCHHHH
T ss_pred EEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECCCCCHHHH
Confidence 58999999999999999876532 46788898888765 6677766532 111 0 0112222211
Q ss_pred ------HHHHHHHH--cCCcEEEEEcCCC
Q 047700 67 ------ARTLFDQL--WKEKILIILDDIW 87 (629)
Q Consensus 67 ------~~~l~~~l--~~k~~LlVlDdv~ 87 (629)
.-.+.+++ +|+.+|+++|++-
T Consensus 306 ~~~~~~a~tiAEyfrd~G~dVLl~~Dslt 334 (588)
T 3mfy_A 306 EASIYTGITIAEYFRDMGYDVALMADSTS 334 (588)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeecchH
Confidence 12333333 3899999999995
No 361
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.59 E-value=0.02 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=14.9
Q ss_pred CEEEEcCCCCcHHHHHHHHH-HHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVL-FEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~-~~~ 23 (629)
+++|+|..|+|||||++.+. ...
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 48999999999999999998 553
No 362
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.59 E-value=0.058 Score=59.48 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|-++|..|+|||+||+++++...
T Consensus 241 ILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 241 ILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp EEEECCTTSCHHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999998765
No 363
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.57 E-value=0.039 Score=53.69 Aligned_cols=39 Identities=28% Similarity=0.378 Sum_probs=28.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTAN 42 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 42 (629)
|++|+|..|+||||+++.+....... .+.+.+.-...+.
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r 140 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFR 140 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccc
Confidence 58999999999999999998886643 2444444333443
No 364
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.56 E-value=0.032 Score=54.63 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
||||.|..|+||||+|+.+..-..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999977654
No 365
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.54 E-value=0.12 Score=54.02 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+.|+|..|+||||||++++....
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999998764
No 366
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.51 E-value=0.036 Score=50.57 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|.|..|+||||+|+.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999987653
No 367
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.48 E-value=0.041 Score=50.86 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=21.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
.|.|.|+.|+||||+|+.+.....
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999988653
No 368
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.48 E-value=0.035 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|.|+.|+||||+|+.+.+..
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998764
No 369
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.45 E-value=0.25 Score=44.60 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
|+|=|..|+||||.++.+++..+.+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6788999999999999999998765
No 370
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.43 E-value=0.038 Score=51.32 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|.|+.|+||||+|+.+.....
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999987754
No 371
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.41 E-value=0.038 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=21.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|.|.|+.|+||||+|+.+.....
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999988765
No 372
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.37 E-value=0.13 Score=52.77 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=51.8
Q ss_pred EEEEcCCCCcHHHHH-HHHHHHhhhcCCCCe-EEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHHH-----
Q 047700 2 IGVYGIGGIGKTTLM-HEVLFEAKKEKLFDQ-VVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESER----- 66 (629)
Q Consensus 2 i~i~G~gG~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 66 (629)
++|.|..|+|||+|| ..|.+... -+. .+++-+.+.. .+.++.+++...-..+ ..++.....
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~ 240 (502)
T 2qe7_A 165 ELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPY 240 (502)
T ss_dssp CEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHH
Confidence 589999999999995 57777652 554 4677888765 4677777776532211 122222221
Q ss_pred -HHHHHHHHc--CCcEEEEEcCC
Q 047700 67 -ARTLFDQLW--KEKILIILDDI 86 (629)
Q Consensus 67 -~~~l~~~l~--~k~~LlVlDdv 86 (629)
.-.+.++++ |+.+|+++||+
T Consensus 241 ~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 241 AGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHcCCcEEEEEecH
Confidence 123444443 89999999998
No 373
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.36 E-value=0.049 Score=48.09 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+++|+|..|+|||||++.+......
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhccc
Confidence 4789999999999999999887553
No 374
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.35 E-value=0.033 Score=53.38 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
+++|+|..|+|||||++.+..-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999754
No 375
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.32 E-value=0.12 Score=53.19 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=51.8
Q ss_pred EEEEcCCCCcHHHHH-HHHHHHhhhcCCCCe-EEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHHH-----
Q 047700 2 IGVYGIGGIGKTTLM-HEVLFEAKKEKLFDQ-VVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESER----- 66 (629)
Q Consensus 2 i~i~G~gG~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 66 (629)
++|.|..|+|||+|| ..|.+... -+. .+++-+.+.. .+.++.+++...=..+ ..++.....
T Consensus 178 ~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~ 253 (515)
T 2r9v_A 178 ELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPY 253 (515)
T ss_dssp EEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHH
Confidence 689999999999995 57777653 564 4677888765 4677777776532111 122222211
Q ss_pred -HHHHHHHHc--CCcEEEEEcCC
Q 047700 67 -ARTLFDQLW--KEKILIILDDI 86 (629)
Q Consensus 67 -~~~l~~~l~--~k~~LlVlDdv 86 (629)
.-.+.++++ |+.+|+++||+
T Consensus 254 ~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 254 AGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHcCCcEEEEeccH
Confidence 123444443 89999999998
No 376
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.31 E-value=0.036 Score=52.39 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
+++|+|..|+|||||++.+..-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999874
No 377
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.26 E-value=0.035 Score=53.50 Aligned_cols=20 Identities=30% Similarity=0.699 Sum_probs=18.9
Q ss_pred CEEEEcCCCCcHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVL 20 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~ 20 (629)
+|+|.|+.|+||||+|+.+.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999998
No 378
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.24 E-value=0.037 Score=52.87 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
+++|+|..|+|||||++.++.-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999874
No 379
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.22 E-value=0.036 Score=51.89 Aligned_cols=24 Identities=33% Similarity=0.583 Sum_probs=20.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+++|+|..|+|||||++.+..-..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999976543
No 380
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.21 E-value=0.037 Score=53.51 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|.|.|+.|+||||+|+.+....
T Consensus 35 livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 381
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.21 E-value=0.035 Score=61.86 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=26.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS 39 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 39 (629)
+-++|..|+|||++|+++.+..... -...+-|+++.
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~ 559 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSE 559 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechh
Confidence 6799999999999999999886322 23445566543
No 382
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.21 E-value=0.035 Score=52.81 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=24.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||++.+..-... ..+.+++
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~ 65 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEKP---SEGAIIV 65 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEE
Confidence 4799999999999999999765432 3456655
No 383
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.20 E-value=0.036 Score=52.88 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=24.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||++.+..-... ..+.+++
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~I~~ 70 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSP---SHGECHL 70 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCC---SSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEE
Confidence 4799999999999999999765432 3456655
No 384
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.19 E-value=0.032 Score=52.32 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=24.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||.+.++.-... ..+.+++
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~ 65 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIF 65 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---CCceEEE
Confidence 4799999999999999999765432 3456655
No 385
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.18 E-value=0.032 Score=52.95 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=24.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||.+.+..-... ..+.+++
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~ 66 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLKA---DEGRVYF 66 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEE
Confidence 4799999999999999999765432 2455554
No 386
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.14 E-value=0.033 Score=52.98 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=24.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||++.+..-... ..+.+++
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~ 83 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLEDF---DEGEIII 83 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC---CCcEEEE
Confidence 4799999999999999999765432 3455554
No 387
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.09 E-value=0.051 Score=49.96 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|.|+.|+||||+|+.+.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998865
No 388
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.09 E-value=0.044 Score=53.81 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=20.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|.|+.|+||||||+.+....
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 48999999999999999998874
No 389
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.08 E-value=0.034 Score=51.72 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=20.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+++|+|..|+|||||++.+..-..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999986543
No 390
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.08 E-value=0.034 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+++|+|..|+|||||++.++.-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999997653
No 391
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.07 E-value=0.44 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+.|+|..|+|||++|+.+.+...
T Consensus 210 vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 210 PLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999998764
No 392
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.06 E-value=0.075 Score=50.46 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=57.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHcCCcE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS-TANVEKIQDEIAEQLGLELCKGTESERARTLFDQLWKEKI 79 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 79 (629)
+++|+|..|+|||||++.+..-.... +.+.+.+.-.. .+-.... ..+..+ .... .+.......+...|..++-
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q--~~~g-l~~~~l~~~la~aL~~~p~ 100 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQ--REVG-EDTKSFADALRAALREDPD 100 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEE--EEBT-TTBSCHHHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeH--HHhC-CCHHHHHHHHHHHHhhCCC
Confidence 47999999999999999998765432 34444442211 0000000 000000 0000 0001123456666666677
Q ss_pred EEEEcCCCCCcchhhhhhccCCCCCCcEEEEeecccccc
Q 047700 80 LIILDDIWANIDLETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 80 LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
++++|+.-+.+....+.... ..|..|++||.+.+..
T Consensus 101 illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 101 VIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp EEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred EEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 88899996443332222221 3466789999887643
No 393
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.05 E-value=0.052 Score=53.40 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
|++|+|..|+||||+++.+..-....
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999998876653
No 394
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.01 E-value=0.047 Score=51.38 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=20.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|.|+.|+||||+|+.+.+..
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998764
No 395
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.01 E-value=0.036 Score=52.26 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=24.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||++.+..-... ..+.+++
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~i 68 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLI 68 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEE
Confidence 4799999999999999999765432 3455554
No 396
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.98 E-value=0.16 Score=52.93 Aligned_cols=82 Identities=22% Similarity=0.245 Sum_probs=52.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHH----HhCCc----------ccCCCHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAE----QLGLE----------LCKGTESER 66 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~----~l~~~----------~~~~~~~~~ 66 (629)
++|.|..|+|||+|++.+.+... -+.++++-+.+.. .+.++.+++-+ ..+.. ..++.....
T Consensus 235 ~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtvvV~~tsd~p~~~R 310 (600)
T 3vr4_A 235 AAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVLIANTSNMPVAAR 310 (600)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEEEEEEETTSCHHHH
T ss_pred EeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCCHHHH
Confidence 68999999999999999987643 4678888887763 46666665432 11110 112222221
Q ss_pred ------HHHHHHHHc--CCcEEEEEcCCC
Q 047700 67 ------ARTLFDQLW--KEKILIILDDIW 87 (629)
Q Consensus 67 ------~~~l~~~l~--~k~~LlVlDdv~ 87 (629)
.-.+.++++ |+.+|+++|++-
T Consensus 311 ~~~~~~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 311 EASIYTGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 123444443 899999999983
No 397
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.97 E-value=0.055 Score=50.13 Aligned_cols=22 Identities=32% Similarity=0.264 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|.|+.|+||||+|+.+....
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998765
No 398
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.97 E-value=0.054 Score=49.93 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|.|.|+.|+||||+|+.+.....
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988753
No 399
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.94 E-value=0.098 Score=51.08 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=29.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA 41 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 41 (629)
||+|+|.||+||||+|..+..-....+ ..++-|+.....
T Consensus 43 vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~~ 81 (307)
T 3end_A 43 VFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPKH 81 (307)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSSC
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence 578889999999999999988876542 356677765443
No 400
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.92 E-value=0.037 Score=52.03 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
+++|+|..|+|||||++.+..-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999754
No 401
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.90 E-value=0.056 Score=53.77 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
|++|+|..|+||||+++.+......
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhhccc
Confidence 5899999999999999999988764
No 402
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.90 E-value=0.17 Score=49.13 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=32.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAE 52 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 52 (629)
+++|+|..|+|||||+..+......... ..++|+.... ...++.+.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEESSS--CHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeCcC--CHHHHHHHHHH
Confidence 4789999999999999999888765411 1355665432 34445444443
No 403
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.85 E-value=0.039 Score=52.04 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=24.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||++.+..-... . +.+++
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~ 58 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQF 58 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEE
Confidence 4799999999999999999765442 2 56655
No 404
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.83 E-value=0.19 Score=60.70 Aligned_cols=80 Identities=21% Similarity=0.271 Sum_probs=54.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcc------cCCCHHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLEL------CKGTESERARTLFDQL 74 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~l 74 (629)
++-|+|+.|+|||+||.++....... =..+.|+++...++... ++.++.+. ..+..++..+.+++..
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv 1501 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALA 1501 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHHH
Confidence 36799999999999999998876643 34578888888777666 44555221 1112334445555444
Q ss_pred c-CCcEEEEEcCCC
Q 047700 75 W-KEKILIILDDIW 87 (629)
Q Consensus 75 ~-~k~~LlVlDdv~ 87 (629)
+ .+.-+||+|.+.
T Consensus 1502 r~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1502 RSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHTCCSEEEESCGG
T ss_pred hcCCCCEEEEcChh
Confidence 4 677899999994
No 405
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.80 E-value=0.039 Score=52.76 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+++|+|..|+|||||++.+..-..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999976543
No 406
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.80 E-value=0.057 Score=48.56 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|+|+|..|+|||||.+.+....
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998764
No 407
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.80 E-value=0.039 Score=52.63 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=20.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+++|+|..|+|||||++.++.-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999997653
No 408
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.73 E-value=0.37 Score=49.15 Aligned_cols=86 Identities=22% Similarity=0.264 Sum_probs=45.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhCCcc----cCCCHHHHHHHHHHHHc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS-TANVEKIQDEIAEQLGLEL----CKGTESERARTLFDQLW 75 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~l~ 75 (629)
||.++|.+|+||||++..+......++ . .+..++... .....+.++......+... ...+...........+.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G-~-kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRG-Y-KVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTT-C-CEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC-C-eEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 578999999999999999988776542 2 344455432 1122333333444444321 11223333322333333
Q ss_pred -CCcEEEEEcCCCC
Q 047700 76 -KEKILIILDDIWA 88 (629)
Q Consensus 76 -~k~~LlVlDdv~~ 88 (629)
...-++++|-...
T Consensus 177 ~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 177 KNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTCSEEEEEECCC
T ss_pred hcCCCEEEEECCCC
Confidence 3344556776653
No 409
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.71 E-value=0.046 Score=51.92 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=20.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+++|+|..|+|||||++.+..-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47999999999999999997643
No 410
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.71 E-value=0.07 Score=60.25 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+.|+|..|+|||++|+.+.+...
T Consensus 591 vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 591 FLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEBSCSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999998764
No 411
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.71 E-value=0.061 Score=51.11 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
++.+.|.||+||||++..+.....
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999987766
No 412
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.70 E-value=0.38 Score=49.38 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=51.1
Q ss_pred EEEEcCCCCcHHHHH-HHHHHHhhhcCCCCe-EEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCHHHH-----
Q 047700 2 IGVYGIGGIGKTTLM-HEVLFEAKKEKLFDQ-VVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTESER----- 66 (629)
Q Consensus 2 i~i~G~gG~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 66 (629)
++|.|..|+|||+|| ..|.+.. +-+. ++++-+.+.. .+.++.+++...=..+ ...+.....
T Consensus 165 ~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~ 240 (513)
T 3oaa_A 165 ELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPY 240 (513)
T ss_dssp CEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHH
T ss_pred EEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHH
Confidence 589999999999996 5676642 2343 5788888865 4677777765442111 112222221
Q ss_pred -HHHHHHHH--cCCcEEEEEcCCC
Q 047700 67 -ARTLFDQL--WKEKILIILDDIW 87 (629)
Q Consensus 67 -~~~l~~~l--~~k~~LlVlDdv~ 87 (629)
.-.+.+++ +|+.+|+++||+-
T Consensus 241 ~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 241 AGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETHH
T ss_pred HHHHHHHHHHhcCCCEEEEecChH
Confidence 12333333 4999999999983
No 413
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.70 E-value=0.041 Score=52.01 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+++|+|..|+|||||++.+..-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999997654
No 414
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.70 E-value=0.086 Score=49.00 Aligned_cols=29 Identities=38% Similarity=0.485 Sum_probs=24.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQ 31 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~ 31 (629)
+|.|.|+.|+||||+++.+.+.... +++.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~ 56 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVK--DYDV 56 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTT--TSCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhc--CCCc
Confidence 3789999999999999999988765 3544
No 415
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.70 E-value=0.041 Score=52.83 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=24.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||++.+..-... ..+.+++
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~ 80 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEPA---TSGTVNL 80 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC---CCeEEEE
Confidence 4799999999999999999766442 3456655
No 416
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.67 E-value=0.1 Score=58.22 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|.|+|..|+||||||+.+.+...
T Consensus 241 vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 241 ILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp EEECSCTTSSHHHHHHHHHHTTT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 67999999999999999987643
No 417
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.66 E-value=0.055 Score=50.07 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+|.|+|.+|+|||||+.++......
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3789999999999999999877543
No 418
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.66 E-value=0.22 Score=48.74 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=36.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQ 53 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 53 (629)
++.|.|.+|+||||+|..+..+...++ ..++|++.- -+.+++...++..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 467999999999999999987776543 677787654 4566666666554
No 419
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.66 E-value=0.041 Score=52.14 Aligned_cols=23 Identities=35% Similarity=0.241 Sum_probs=20.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|.|+|+.|+||||+|+.+....
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999999999999998764
No 420
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.64 E-value=0.064 Score=50.05 Aligned_cols=23 Identities=22% Similarity=0.118 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
|.|.|+.|+||||+|+.+.+...
T Consensus 19 I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988754
No 421
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.62 E-value=0.15 Score=56.81 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+-++|..|+|||++|+.+.+..
T Consensus 204 vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999886
No 422
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.59 E-value=0.03 Score=54.22 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=18.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|.|..|+||||+|+.+.+...
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999987543
No 423
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.56 E-value=0.074 Score=59.32 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=25.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS 39 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 39 (629)
+-++|..|+|||++|+.+.+... ...+-+++++
T Consensus 491 ~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~ 523 (758)
T 1r6b_X 491 FLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSE 523 (758)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGG
T ss_pred EEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechh
Confidence 56899999999999999988762 2344555544
No 424
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.55 E-value=0.065 Score=48.47 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~ 22 (629)
|+|+|..|+|||||.+.+...
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999876
No 425
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.53 E-value=0.066 Score=55.26 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=28.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTAN 42 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 42 (629)
|++|+|.+|+|||||++.+..-.... .+.+++.-...+.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 58999999999999999998876643 3445554444444
No 426
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.50 E-value=0.063 Score=51.28 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
++|+|..|+|||||.+.++.-..
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999999999997653
No 427
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.38 E-value=0.13 Score=49.06 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=29.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSST 40 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 40 (629)
||+|.|.||+||||+|..+..-....+ ..+.-|+....
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G--~~VlliD~D~q 40 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMG--KTIMVVGCDPK 40 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEEECTT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCC--CcEEEEcCCCC
Confidence 478889999999999999988877442 35667776543
No 428
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.35 E-value=0.067 Score=49.09 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
||.|.|+.|+||||.|+.+.+...
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 577899999999999999998754
No 429
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.32 E-value=0.069 Score=48.67 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|.|.|++|+||||.|+.+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999998754
No 430
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.31 E-value=0.22 Score=46.29 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=26.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+|.|.|..|+||||+|+.+.+..... ++..+...
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~ 62 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRT 62 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeee
Confidence 37899999999999999999887654 46534443
No 431
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.28 E-value=0.21 Score=55.06 Aligned_cols=67 Identities=22% Similarity=0.327 Sum_probs=43.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHc-CCcEE
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELCKGTESERARTLFDQLW-KEKIL 80 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~k~~L 80 (629)
|-++|+.|.|||.+|+++.+..... ++.++ ..+ +...+.+.++ ..+..+.+..+ ..+..
T Consensus 514 vLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~----~~~--------l~s~~vGese-~~vr~lF~~Ar~~~P~I 573 (806)
T 3cf2_A 514 VLFYGPPGCGKTLLAKAIANECQAN-------FISIK----GPE--------LLTMWFGESE-ANVREIFDKARQAAPCV 573 (806)
T ss_dssp CEEESSTTSSHHHHHHHHHHTTTCE-------EEECC----HHH--------HHTTTCSSCH-HHHHHHHHHHHTTCSEE
T ss_pred EEEecCCCCCchHHHHHHHHHhCCc-------eEEec----cch--------hhccccchHH-HHHHHHHHHHHHcCCce
Confidence 4589999999999999999986643 33332 111 2122222333 34455555554 67899
Q ss_pred EEEcCCCC
Q 047700 81 IILDDIWA 88 (629)
Q Consensus 81 lVlDdv~~ 88 (629)
|++|+++.
T Consensus 574 ifiDEiDs 581 (806)
T 3cf2_A 574 LFFDELDS 581 (806)
T ss_dssp EECSCGGG
T ss_pred eechhhhH
Confidence 99999963
No 432
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.26 E-value=0.43 Score=48.66 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=26.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLK 37 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v 37 (629)
||.++|.+|+||||++..+......++ . .++-|+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G-~-kVllv~~ 136 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRG-Y-KVGVVCS 136 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTT-C-CEEEEEC
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCC-C-eEEEEeC
Confidence 588999999999999999988776542 2 3444554
No 433
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.25 E-value=0.11 Score=53.40 Aligned_cols=81 Identities=21% Similarity=0.281 Sum_probs=49.3
Q ss_pred EEEEcCCCCcHHHHH-HHHHHHhhhcCCCCe-EEEEEeCCCc-CHHHHHHHHHHHhCCc-------ccCCCH------HH
Q 047700 2 IGVYGIGGIGKTTLM-HEVLFEAKKEKLFDQ-VVFVLKSSTA-NVEKIQDEIAEQLGLE-------LCKGTE------SE 65 (629)
Q Consensus 2 i~i~G~gG~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~------~~ 65 (629)
++|.|..|+|||+|| ..|.+... -+. .+++-+.+.. .+.++.+++...=..+ ..++.. ..
T Consensus 166 ~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~ 241 (507)
T 1fx0_A 166 ELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPY 241 (507)
T ss_dssp CBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHH
T ss_pred EEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHH
Confidence 579999999999995 57777653 453 4677787765 4566666664421110 111111 11
Q ss_pred HHHHHHHHH--cCCcEEEEEcCC
Q 047700 66 RARTLFDQL--WKEKILIILDDI 86 (629)
Q Consensus 66 ~~~~l~~~l--~~k~~LlVlDdv 86 (629)
..-.+.+++ +|+.+|+++||+
T Consensus 242 ~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 242 TGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHcCCcEEEEEecH
Confidence 122233333 499999999997
No 434
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.20 E-value=0.065 Score=51.93 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+++|+|..|+|||||++.+..-.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 47999999999999999998765
No 435
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.19 E-value=0.15 Score=47.93 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=32.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKI 46 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 46 (629)
|+|.|.||+||||+|..+..-....+ ..++-|+.....+....
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~~~ 45 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLGQT 45 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChHHH
Confidence 67799999999999999998887553 45677777665554433
No 436
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.15 E-value=0.13 Score=48.13 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=27.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS 39 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 39 (629)
++.|.|.+|+||||||..+....... =..++|++...
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~ 61 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE 61 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 46899999999999998887665433 24677877654
No 437
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.09 E-value=0.055 Score=51.43 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=24.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||++.+..-. . ..+.+++
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~-p---~~G~I~~ 62 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL-P---YSGNIFI 62 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS-C---CEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C---CCcEEEE
Confidence 47999999999999999997654 2 3455554
No 438
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.07 E-value=0.038 Score=51.51 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=19.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
+|+|.|..|+||||+++.+...
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999765
No 439
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.07 E-value=0.073 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=20.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|.|+|+.|+||||||+.+....
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998764
No 440
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.06 E-value=0.073 Score=49.74 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|.|+.|+||||+|+.+....
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998764
No 441
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.01 E-value=0.081 Score=46.14 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~ 22 (629)
|+|+|.+|+|||||.+++...
T Consensus 6 v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999998754
No 442
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.01 E-value=0.086 Score=51.68 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=27.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKS 38 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 38 (629)
|++|+|.+|+||||++..+..-.... =..+.+++..
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D 142 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAAD 142 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 58899999999999999998876643 2335556543
No 443
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.01 E-value=0.075 Score=48.97 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+|+|+|.+|+|||||+.++.....
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999987754
No 444
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.00 E-value=0.19 Score=45.88 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=32.5
Q ss_pred CEEEE-cCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHH
Q 047700 1 MIGVY-GIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQ 47 (629)
Q Consensus 1 vi~i~-G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 47 (629)
||+|+ +.||+||||+|..+..-....+ .+.-|+.....+....+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~~~ 46 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATGWG 46 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHHHh
Confidence 45665 6799999999999998887653 67778887665554433
No 445
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.94 E-value=0.28 Score=49.35 Aligned_cols=99 Identities=11% Similarity=0.225 Sum_probs=44.8
Q ss_pred cCCccEEEecCCccccc-chhhhcccCCcEEEcCCcCCCC--cccccCccccceeeccCCCCccCch-hhhcCccccEEe
Q 047700 299 MSKLRGLALSKMQLLSL-PQSVHLLSNLQTLCLDQCVLGD--ISIIGNLEKLENLSLVDSDIEWLPN-EIGELTQLRLLD 374 (629)
Q Consensus 299 ~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~ 374 (629)
+.+|+.+.+..+ +..+ ...+..+..|+.+.+..+ ++. ...+..+..|+.+.+.. +++.++. .+..+++|+.+.
T Consensus 216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEE
T ss_pred ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccccccc
Confidence 444555544332 2222 223444555555555443 222 12344455555555543 2333332 234455555555
Q ss_pred ecCCCCCCccChhhhhcCccCceEEec
Q 047700 375 LSSCWNLKVIPPNVISKLTQLEELYMG 401 (629)
Q Consensus 375 l~~~~~l~~~p~~~i~~l~~L~~L~l~ 401 (629)
+.++ .++.++..++.++.+|+.+.+.
T Consensus 293 l~~~-~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 293 MDNS-AIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp ECCT-TCCEECTTTTTTCTTCCEEECC
T ss_pred cccc-ccceehhhhhcCCCCCCEEEcC
Confidence 5443 3444554445555555555553
No 446
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.88 E-value=0.072 Score=47.37 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=19.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
+.+|+|..|+|||||+.+|+--
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999764
No 447
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.87 E-value=0.073 Score=51.83 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
+|.|.|+.|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999874
No 448
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.87 E-value=0.055 Score=52.58 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~ 22 (629)
+++|+|..|+|||||++.+..-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 4799999999999999999654
No 449
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.85 E-value=0.081 Score=45.65 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|+|.+|+|||||+.++.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999988653
No 450
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.83 E-value=0.08 Score=47.15 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~ 22 (629)
|+|+|.+|+|||||++.+...
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999998763
No 451
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.83 E-value=0.69 Score=47.82 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=34.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIA 51 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 51 (629)
++.|.|.+|+||||+|..+........ =..++|+.... +..++.+.++
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 478999999999999999988876531 13567776543 3456666554
No 452
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.81 E-value=0.08 Score=47.63 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+.|+|.+|+||||+|..+++...
T Consensus 61 ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 61 LVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp EEEESCGGGCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999988764
No 453
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.81 E-value=0.082 Score=45.70 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.++|.+|+|||||+..+....
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998663
No 454
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.79 E-value=0.072 Score=52.94 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+++|+|..|+|||||++.+..-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47999999999999999997643
No 455
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.77 E-value=0.12 Score=47.38 Aligned_cols=105 Identities=16% Similarity=0.155 Sum_probs=55.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCcc------cCC--CHHHHHHHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLEL------CKG--TESERARTLFDQ 73 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------~~~--~~~~~~~~l~~~ 73 (629)
|.+.|.||+||||+|-.+......++ ++ +..+++...-+.... .....+.... ... .+.+ +...
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G-~~-V~v~d~D~q~~~~~~--al~~gl~~~~~~~~~~~~~~~~e~~----l~~~ 80 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQG-VR-VMAGVVETHGRAETE--ALLNGLPQQPLLRTEYRGMTLEEMD----LDAL 80 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT-CC-EEEEECCCTTCHHHH--HHHTTSCBCCCEEEEETTEEEEECC----HHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC-CC-EEEEEeCCCCChhHH--HHhcCccccCcceeecCCccccccc----HHHH
Confidence 67889999999999999988877543 33 445555443222211 1122221100 000 0011 1111
Q ss_pred HcCCcEEEEEcCCCCC--------cchhhhhhccCCCCCCcEEEEeeccccc
Q 047700 74 LWKEKILIILDDIWAN--------IDLETVGILFGGAHRGCKILLTPRYQNV 117 (629)
Q Consensus 74 l~~k~~LlVlDdv~~~--------~~~~~l~~~~~~~~~gs~ilvTTR~~~v 117 (629)
+..+.=++|+|+.... .-|+++.... ..|--|+.|+.-.+.
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l---~sgidVitT~Nlqh~ 129 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELL---AAGIDVYTTVNVQHL 129 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHH---HTTCEEEEEEEGGGB
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHH---cCCCCEEEEcccccc
Confidence 2235668999987643 2366655433 235567777765544
No 456
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.76 E-value=0.28 Score=44.79 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=23.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhc
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKE 26 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~ 26 (629)
.|.|.|..|+||||+++.+.+.....
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999987764
No 457
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.67 E-value=0.19 Score=45.08 Aligned_cols=102 Identities=12% Similarity=0.122 Sum_probs=71.6
Q ss_pred ccceEEeccCC-CCCC-----CCCCCCCCCcchhccCCccEEEecCCccc-----ccchhhhcccCCcEEEcCCcCCCC-
Q 047700 270 KNCSAVSLNDI-EIGV-----LPKGLEYPQLEFFWMSKLRGLALSKMQLL-----SLPQSVHLLSNLQTLCLDQCVLGD- 337 (629)
Q Consensus 270 ~~l~~L~l~~~-~~~~-----lp~~~~~~~l~~l~~~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~l~~~~l~~- 337 (629)
..++.|++.++ .++. +-..+.. -+.|+.|+|++|.+. .+.+.+..-..|++|+|++|.|..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~-------N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACN-------SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTT-------CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhh-------CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 46888888874 5432 1111111 578999999999987 445556677899999999999887
Q ss_pred -c----ccccCccccceeeccCCCC---c-----cCchhhhcCccccEEeecCC
Q 047700 338 -I----SIIGNLEKLENLSLVDSDI---E-----WLPNEIGELTQLRLLDLSSC 378 (629)
Q Consensus 338 -~----~~i~~l~~L~~L~l~~~~l---~-----~lp~~i~~l~~L~~L~l~~~ 378 (629)
. ..+..-+.|++|+|+++.. . .+...+..-+.|+.|+++.+
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2 3455667799999987633 3 23344556688999999865
No 458
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.54 E-value=0.075 Score=51.26 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+++|+|..|+|||||++.+..-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999997654
No 459
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.53 E-value=0.092 Score=46.91 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|+|.+|+|||||+..+..+.
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999998763
No 460
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.49 E-value=0.11 Score=45.21 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|+|.+|+|||||+..+.+..
T Consensus 8 i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 6899999999999999998753
No 461
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.41 E-value=0.087 Score=50.90 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|.|+|+.|+||||||..+....
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhC
Confidence 47899999999999999998763
No 462
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.39 E-value=0.09 Score=46.84 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~ 22 (629)
|+|+|.+|+|||||...+.+.
T Consensus 10 i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999864
No 463
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.37 E-value=1 Score=46.97 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=26.2
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLK 37 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v 37 (629)
+|.|+|.+|+||||++.++......++ . .+.-|+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G-~-kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKG-W-KTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-C-eEEEEec
Confidence 588999999999999999987766432 2 3444554
No 464
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=91.26 E-value=0.16 Score=52.68 Aligned_cols=82 Identities=17% Similarity=0.155 Sum_probs=51.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCc-CHHHHHHHHHH----HhCCc----------ccCCCHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTA-NVEKIQDEIAE----QLGLE----------LCKGTESER 66 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~----~l~~~----------~~~~~~~~~ 66 (629)
++|.|..|+|||+|++.+.+... -+.++++-+.+.. .+.++.+++-+ ..+.. ..++.....
T Consensus 224 ~~Ifg~~g~GKT~l~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~~~rtvvv~~tsd~p~~~R 299 (578)
T 3gqb_A 224 AAIPGPFGSGKSVTQQSLAKWSN----ADVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAR 299 (578)
T ss_dssp EEECCCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHTTGGGCBCTTTSSBSGGGEEEEEEETTSCHHHH
T ss_pred EeeeCCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCCHHHH
Confidence 58999999999999999987743 4678888887763 45666655432 11110 112222211
Q ss_pred ------HHHHHHHH--cCCcEEEEEcCCC
Q 047700 67 ------ARTLFDQL--WKEKILIILDDIW 87 (629)
Q Consensus 67 ------~~~l~~~l--~~k~~LlVlDdv~ 87 (629)
.-.+.+++ +|+.+|+++|++-
T Consensus 300 ~~~~~~altiAEyfrd~G~dVLl~~Ds~t 328 (578)
T 3gqb_A 300 EASIYVGVTIAEYFRDQGFSVALMADSTS 328 (578)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEECCSCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecChH
Confidence 12233333 3999999999983
No 465
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.26 E-value=0.12 Score=47.49 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|+|.|+.|+||||+|+.+....
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999997753
No 466
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.25 E-value=0.088 Score=52.26 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=24.7
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||.+.+..-... ..+.+++
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i 63 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQP---DSGEISL 63 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCC---SEEEEEE
T ss_pred EEEEECCCCchHHHHHHHHhcCCCC---CCcEEEE
Confidence 4799999999999999999876443 2455554
No 467
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.25 E-value=0.12 Score=50.99 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
|.|+|+.|+||||+|+.++.....
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 789999999999999999887654
No 468
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.24 E-value=0.089 Score=53.89 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=26.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLK 37 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v 37 (629)
+|+|+|.+|+||||+|..+......++ ..+..|+.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G--~kVllv~~ 135 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRG--LKPALIAA 135 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHH--CCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEec
Confidence 589999999999999999988766442 23455554
No 469
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.21 E-value=0.21 Score=48.25 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=28.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSST 40 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 40 (629)
+|+|.|.||+||||+|..+..-....+ ..+.-|+....
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~G--~rVlliD~D~q 41 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEMG--KKVMIVGCDPK 41 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEEECSS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHCC--CeEEEEecCCC
Confidence 477889999999999999988876542 34666776544
No 470
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.16 E-value=0.1 Score=46.69 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|+|..|+|||||..++.+..
T Consensus 51 i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 51 IIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999987653
No 471
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.14 E-value=0.092 Score=50.50 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
++.|+|.+|+||||||..+.....
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999987554
No 472
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.10 E-value=0.53 Score=56.15 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=0.0
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCc------ccCCCHHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLE------LCKGTESERARTLFDQL 74 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------~~~~~~~~~~~~l~~~l 74 (629)
++.|.|..|+||||||..+.......+. .++|++.....+... ++.++.. ....+.++....+++..
T Consensus 734 lVlI~G~PG~GKTtLal~lA~~aa~~g~--~VlyiS~Ees~~ql~-----A~~lGvd~~~L~i~~~~~leei~~~l~~lv 806 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLTLQVIAAAQREGK--TCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALA 806 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCcHHHHHHHHHHHHHcCC--CeEEEeccchHHHHH-----HHHcCCChhheEEecCCcHHHHHHHHHHHH
Q ss_pred c-CCcEEEEEcCCC
Q 047700 75 W-KEKILIILDDIW 87 (629)
Q Consensus 75 ~-~k~~LlVlDdv~ 87 (629)
+ .+.-+||+|.+.
T Consensus 807 ~~~~~~lVVIDsLq 820 (1706)
T 3cmw_A 807 RSGAVDVIVVDSVA 820 (1706)
T ss_dssp HHTCCSEEEESCST
T ss_pred HccCCCEEEEechh
No 473
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.09 E-value=0.11 Score=45.02 Aligned_cols=22 Identities=27% Similarity=0.697 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|+|..|+|||||...+.+..
T Consensus 7 i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998764
No 474
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.05 E-value=0.13 Score=44.45 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|+|..|+|||||...+.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997654
No 475
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.04 E-value=0.14 Score=46.38 Aligned_cols=106 Identities=14% Similarity=0.172 Sum_probs=52.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhCCccc---CCCHHHHHHHHHHHHcCCc
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQLGLELC---KGTESERARTLFDQLWKEK 78 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~l~~~l~~k~ 78 (629)
..++|.-|.||||.|-....+.... .....+ +.... |.+.-...|+++++.... ..... .+.+.+.++-
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~-g~kVli-~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~~~~ 102 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFA-KQHAIV-FKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHITEEM 102 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT-TCCEEE-EECC-------------------CCEEECSSGG----GGGGGCCSSC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC-CCEEEE-EEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHHhcCC
Confidence 4689999999999998887776654 233333 33222 222233355666544321 11111 2333333334
Q ss_pred EEEEEcCCCCC--cchhhhhhccCCCCCCcEEEEeecccccc
Q 047700 79 ILIILDDIWAN--IDLETVGILFGGAHRGCKILLTPRYQNVL 118 (629)
Q Consensus 79 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTTR~~~v~ 118 (629)
-+|++|.+.-- ++++.+.. +.+ .|-.||+|-++.+-.
T Consensus 103 dvViIDEaQF~~~~~V~~l~~-l~~--~~~~Vi~~Gl~~DF~ 141 (214)
T 2j9r_A 103 DVIAIDEVQFFDGDIVEVVQV-LAN--RGYRVIVAGLDQDFR 141 (214)
T ss_dssp CEEEECCGGGSCTTHHHHHHH-HHH--TTCEEEEEECSBCTT
T ss_pred CEEEEECcccCCHHHHHHHHH-Hhh--CCCEEEEEecccccc
Confidence 48999999743 44544433 211 267899999987764
No 476
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.03 E-value=0.24 Score=45.51 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=22.4
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+|.|.|..|+||||+++.+.+....
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3789999999999999999988765
No 477
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.03 E-value=0.11 Score=48.75 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.9
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
.|.|.|..|+||||+|+.+.+..
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 37899999999999999998875
No 478
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.93 E-value=0.1 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.094 Sum_probs=20.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+++|+|..|+|||||++.+....
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999753
No 479
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.90 E-value=0.11 Score=46.08 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|+|.+|+|||||+.++.++.
T Consensus 10 i~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999988753
No 480
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.90 E-value=0.13 Score=44.54 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~ 22 (629)
|+|+|..|+|||||..++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999875
No 481
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.89 E-value=0.1 Score=51.80 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=24.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||.+.+..-... ..+.+++
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i 74 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERP---TKGDVWI 74 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC---CccEEEE
Confidence 4789999999999999999865432 2445544
No 482
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.85 E-value=0.12 Score=45.09 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|+|..|+|||||..++.+..
T Consensus 9 i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999988663
No 483
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.83 E-value=0.12 Score=46.07 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|+|.+|+|||||+..+.+..
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999998877653
No 484
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.81 E-value=1 Score=46.36 Aligned_cols=50 Identities=10% Similarity=-0.026 Sum_probs=35.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQ 53 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 53 (629)
++.|.|.+|+||||+|..+......+. =..++|+... -+..++...++..
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 367999999999999999988876431 2356776654 3456677666544
No 485
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.81 E-value=0.12 Score=45.33 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 047700 2 IGVYGIGGIGKTTLMHEVLFE 22 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~ 22 (629)
|+|+|.+|+|||||.+.+...
T Consensus 7 i~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999765
No 486
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.81 E-value=0.77 Score=45.08 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=36.1
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKIQDEIAEQL 54 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 54 (629)
++.|.|..|+||||+|..+....... =..++|+.. .-+..++...++...
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 46799999999999999998887653 245667654 345667777665543
No 487
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.79 E-value=0.12 Score=49.83 Aligned_cols=23 Identities=30% Similarity=0.166 Sum_probs=20.5
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|.|+|+.|+||||||..+....
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCccCHHHHHHHHHHhC
Confidence 47899999999999999998773
No 488
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.77 E-value=0.091 Score=51.42 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~ 23 (629)
+|.|+|+.|+||||||..+....
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHC
Confidence 47899999999999999998764
No 489
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.76 E-value=0.13 Score=50.15 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAK 24 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~ 24 (629)
+-|+|..|+|||++|+.+.+...
T Consensus 53 vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999998763
No 490
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.74 E-value=0.24 Score=44.85 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=31.8
Q ss_pred CEEEE-cCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCCCcCHHHH
Q 047700 1 MIGVY-GIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSSTANVEKI 46 (629)
Q Consensus 1 vi~i~-G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 46 (629)
||+|+ +.||+||||+|..+..-.... =..+.-|+.....+....
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~--g~~vlliD~D~~~~~~~~ 47 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRS--GYNIAVVDTDPQMSLTNW 47 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHH
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEECCCCCCHHHH
Confidence 46777 669999999999998887754 235677887765554443
No 491
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.73 E-value=0.12 Score=44.81 Aligned_cols=22 Identities=14% Similarity=0.376 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|+|..|+|||||..++.++.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999988764
No 492
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.70 E-value=0.12 Score=44.85 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|+|..|+|||||...+.++.
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999998764
No 493
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.69 E-value=0.13 Score=48.96 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=25.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFVLKSS 39 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 39 (629)
|-|+|..|+|||++|+.+++..... -...+.|+++.
T Consensus 32 vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~ 67 (265)
T 2bjv_A 32 VLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAA 67 (265)
T ss_dssp EEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGG
T ss_pred EEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCC
Confidence 5799999999999999998875422 12234566554
No 494
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.69 E-value=0.14 Score=45.94 Aligned_cols=22 Identities=36% Similarity=0.370 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|+|.+|+|||||++.+.+..
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999999998776553
No 495
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.64 E-value=0.13 Score=46.01 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|+|.+|+|||||+..+.++.
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCcHHHHHHHHHhCC
Confidence 7899999999999999988764
No 496
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.59 E-value=0.16 Score=46.54 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=24.6
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQ 31 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~ 31 (629)
+|.|.|+.|+||||+++.+.+..... .+..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 37899999999999999999887654 3554
No 497
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.54 E-value=0.12 Score=51.37 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.3
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhh
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKK 25 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~ 25 (629)
+++|+|..|+|||||++.+.+....
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4799999999999999999998653
No 498
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.54 E-value=0.11 Score=51.90 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=24.8
Q ss_pred CEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 047700 1 MIGVYGIGGIGKTTLMHEVLFEAKKEKLFDQVVFV 35 (629)
Q Consensus 1 vi~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 35 (629)
+++|+|..|+|||||.+.+..-... -.+.+++
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i 62 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFI 62 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEE
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCC---CCeEEEE
Confidence 4799999999999999999765443 2455554
No 499
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.54 E-value=0.13 Score=45.33 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|.|+|..|+|||||...+.++.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999987753
No 500
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.52 E-value=0.15 Score=44.12 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 047700 2 IGVYGIGGIGKTTLMHEVLFEA 23 (629)
Q Consensus 2 i~i~G~gG~GKTtLa~~v~~~~ 23 (629)
|+|+|..|+|||||..++.+..
T Consensus 6 i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999987653
Done!