BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047708
         (397 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
           Ectodomain
 pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
           Brassinolide
          Length = 772

 Score = 32.3 bits (72), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 143 VLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS-EI 200
           +LD   + G  +PS LS   NL  +SL + R  G++P  IG L  L IL LS +  S  I
Sbjct: 469 ILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527

Query: 201 PISFG 205
           P   G
Sbjct: 528 PAELG 532


>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
 pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
          Length = 768

 Score = 32.3 bits (72), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 143 VLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS-EI 200
           +LD   + G  +PS LS   NL  +SL + R  G++P  IG L  L IL LS +  S  I
Sbjct: 472 ILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 201 PISFG 205
           P   G
Sbjct: 531 PAELG 535


>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 28.9 bits (63), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 136 QGMKDLKVL--DMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLS 193
           QG+ +L+ L  +  GIR  SLP+S++ L NL++L + +       P I  L  LE LDL 
Sbjct: 180 QGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237

Query: 194 K-SDVSEIPISFG 205
             + +   P  FG
Sbjct: 238 GCTALRNYPPIFG 250


>pdb|1PI1|A Chain A, Crystal Structure Of A Human Mob1 Protein; Toward
           Understanding Mob-Regulated Cell Cycle Pathways
          Length = 185

 Score = 28.9 bits (63), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 72  KNKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECP 115
           +   M+  G +L +W ++N  +    I++++  I E   E  CP
Sbjct: 11  RQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCP 54


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,227,245
Number of Sequences: 62578
Number of extensions: 373693
Number of successful extensions: 767
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 17
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)