Query 047708
Match_columns 397
No_of_seqs 272 out of 3287
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 13:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2E-34 4.4E-39 286.7 13.0 242 1-242 423-677 (889)
2 PLN03210 Resistant to P. syrin 99.9 3.6E-26 7.9E-31 239.0 23.0 370 9-389 438-910 (1153)
3 PLN00113 leucine-rich repeat r 99.9 2.2E-23 4.8E-28 217.4 17.5 157 91-249 116-276 (968)
4 PLN00113 leucine-rich repeat r 99.9 2.1E-23 4.5E-28 217.6 16.9 158 89-250 89-253 (968)
5 KOG0444 Cytoskeletal regulator 99.9 1.8E-24 3.9E-29 198.5 -1.0 281 87-393 97-383 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 8E-24 1.7E-28 194.3 -2.6 276 88-392 73-358 (1255)
7 KOG4194 Membrane glycoprotein 99.9 6.4E-22 1.4E-26 180.4 6.9 289 90-390 99-409 (873)
8 KOG4194 Membrane glycoprotein 99.8 3.8E-22 8.3E-27 181.8 3.4 272 93-389 149-432 (873)
9 KOG0472 Leucine-rich repeat pr 99.8 2.2E-22 4.8E-27 175.7 -6.9 259 95-383 47-308 (565)
10 KOG0472 Leucine-rich repeat pr 99.8 4E-21 8.7E-26 167.9 -1.9 279 89-384 202-540 (565)
11 PLN03210 Resistant to P. syrin 99.8 6.5E-18 1.4E-22 177.3 20.0 277 91-386 609-944 (1153)
12 KOG0617 Ras suppressor protein 99.7 6.2E-20 1.4E-24 142.6 -4.5 169 105-288 23-193 (264)
13 PRK15370 E3 ubiquitin-protein 99.7 9.3E-17 2E-21 158.6 13.4 245 94-383 179-426 (754)
14 KOG0618 Serine/threonine phosp 99.7 1.7E-18 3.7E-23 166.0 -0.6 243 115-384 241-488 (1081)
15 PRK15387 E3 ubiquitin-protein 99.7 7.6E-16 1.6E-20 151.4 17.7 148 79-247 209-356 (788)
16 KOG0617 Ras suppressor protein 99.7 1.3E-18 2.8E-23 135.3 -4.7 162 83-247 23-187 (264)
17 PRK15370 E3 ubiquitin-protein 99.6 2.8E-15 6.1E-20 148.2 15.0 236 80-357 187-426 (754)
18 PRK15387 E3 ubiquitin-protein 99.6 4E-14 8.8E-19 139.4 15.3 225 80-357 231-456 (788)
19 KOG0618 Serine/threonine phosp 99.5 1.5E-16 3.2E-21 152.9 -5.8 263 91-382 239-507 (1081)
20 KOG4237 Extracellular matrix p 99.4 6.2E-15 1.3E-19 129.2 -1.7 251 94-355 68-355 (498)
21 KOG4237 Extracellular matrix p 99.4 1.2E-14 2.6E-19 127.4 -0.6 117 80-196 76-199 (498)
22 KOG4658 Apoptotic ATPase [Sign 99.4 6.4E-13 1.4E-17 133.7 8.6 292 81-392 533-867 (889)
23 cd00116 LRR_RI Leucine-rich re 99.4 2.8E-13 6E-18 123.8 5.5 271 98-383 3-318 (319)
24 cd00116 LRR_RI Leucine-rich re 99.4 3.7E-13 8.1E-18 122.9 5.9 252 91-355 21-316 (319)
25 KOG0532 Leucine-rich repeat (L 99.3 2.2E-13 4.7E-18 124.9 -2.8 191 93-300 75-270 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 4.9E-13 1.1E-17 122.7 -2.3 192 97-305 54-249 (722)
27 PF14580 LRR_9: Leucine-rich r 99.2 3.6E-11 7.9E-16 97.6 6.0 128 87-216 13-148 (175)
28 PF14580 LRR_9: Leucine-rich r 99.1 6E-11 1.3E-15 96.3 4.0 108 136-246 16-126 (175)
29 COG4886 Leucine-rich repeat (L 99.0 2.4E-10 5.2E-15 107.5 6.3 190 97-302 97-289 (394)
30 COG4886 Leucine-rich repeat (L 99.0 2.4E-10 5.3E-15 107.5 6.0 182 87-284 110-293 (394)
31 KOG3207 Beta-tubulin folding c 99.0 5.7E-11 1.2E-15 106.0 1.1 208 90-302 118-338 (505)
32 KOG3207 Beta-tubulin folding c 99.0 8.1E-11 1.7E-15 105.1 0.7 179 113-302 119-313 (505)
33 KOG1259 Nischarin, modulator o 98.9 1.6E-10 3.4E-15 98.6 -0.6 131 113-247 282-413 (490)
34 KOG1259 Nischarin, modulator o 98.9 2E-10 4.4E-15 97.9 -0.4 194 90-303 211-412 (490)
35 KOG1909 Ran GTPase-activating 98.7 8.2E-09 1.8E-13 90.0 4.2 232 113-357 28-309 (382)
36 KOG4341 F-box protein containi 98.7 1.4E-09 3E-14 96.8 -3.0 276 94-387 139-441 (483)
37 KOG2120 SCF ubiquitin ligase, 98.6 2.7E-09 6E-14 91.0 -1.7 60 321-382 311-373 (419)
38 PLN03150 hypothetical protein; 98.6 1.6E-07 3.4E-12 93.0 9.8 105 163-279 419-526 (623)
39 PF13855 LRR_8: Leucine rich r 98.6 4.1E-08 8.9E-13 65.5 3.5 59 115-173 1-60 (61)
40 PLN03150 hypothetical protein; 98.6 2.5E-07 5.4E-12 91.6 9.9 107 140-247 419-529 (623)
41 KOG2120 SCF ubiquitin ligase, 98.5 3.7E-09 8E-14 90.2 -3.9 174 116-301 186-374 (419)
42 PF13855 LRR_8: Leucine rich r 98.5 1.4E-07 3E-12 62.9 3.3 59 93-151 1-61 (61)
43 KOG0531 Protein phosphatase 1, 98.4 2.9E-08 6.4E-13 93.7 -1.5 175 90-283 92-270 (414)
44 KOG4341 F-box protein containi 98.4 1.2E-08 2.6E-13 91.0 -3.9 256 115-386 138-415 (483)
45 KOG1909 Ran GTPase-activating 98.4 8.3E-08 1.8E-12 83.8 0.7 40 32-71 17-56 (382)
46 KOG1859 Leucine-rich repeat pr 98.4 2.2E-09 4.9E-14 101.8 -10.0 131 140-284 165-295 (1096)
47 KOG0531 Protein phosphatase 1, 98.2 1.7E-07 3.6E-12 88.6 -0.5 192 91-301 70-266 (414)
48 KOG4579 Leucine-rich repeat (L 98.1 2.2E-07 4.8E-12 70.4 -2.5 109 95-203 29-141 (177)
49 KOG1859 Leucine-rich repeat pr 98.0 8.6E-08 1.9E-12 91.3 -6.8 154 87-245 103-291 (1096)
50 KOG3665 ZYG-1-like serine/thre 98.0 2.8E-06 6.1E-11 84.2 3.2 132 115-247 122-264 (699)
51 KOG2982 Uncharacterized conser 98.0 1.8E-06 4E-11 74.0 0.6 103 96-198 48-159 (418)
52 KOG3665 ZYG-1-like serine/thre 98.0 4.9E-06 1.1E-10 82.5 3.5 56 161-217 147-204 (699)
53 KOG1644 U2-associated snRNP A' 98.0 1.4E-05 3E-10 65.0 5.3 80 95-174 44-125 (233)
54 KOG1644 U2-associated snRNP A' 97.9 2.6E-05 5.5E-10 63.4 5.7 120 96-217 22-149 (233)
55 PRK15386 type III secretion pr 97.9 6.1E-05 1.3E-09 69.2 8.7 73 113-196 50-123 (426)
56 PF12799 LRR_4: Leucine Rich r 97.9 2.6E-05 5.5E-10 47.7 4.3 32 186-217 2-33 (44)
57 PF12799 LRR_4: Leucine Rich r 97.8 2.2E-05 4.8E-10 47.9 3.5 35 140-174 2-36 (44)
58 PRK15386 type III secretion pr 97.8 8.5E-05 1.9E-09 68.3 8.0 60 92-156 51-112 (426)
59 KOG4579 Leucine-rich repeat (L 97.8 5.3E-06 1.1E-10 63.1 -0.3 111 116-227 28-141 (177)
60 KOG2982 Uncharacterized conser 97.7 9.6E-06 2.1E-10 69.8 1.0 179 117-305 47-264 (418)
61 COG5238 RNA1 Ran GTPase-activa 97.6 8.6E-05 1.9E-09 63.3 4.6 188 158-355 88-312 (388)
62 COG5238 RNA1 Ran GTPase-activa 97.1 0.0012 2.6E-08 56.5 6.0 186 34-219 19-253 (388)
63 KOG1947 Leucine rich repeat pr 97.1 6.7E-05 1.4E-09 72.6 -2.1 62 184-245 242-307 (482)
64 KOG2123 Uncharacterized conser 97.1 2.5E-05 5.4E-10 66.6 -4.3 98 92-191 18-123 (388)
65 KOG2739 Leucine-rich acidic nu 97.0 0.00043 9.3E-09 58.8 2.6 83 135-217 61-152 (260)
66 KOG1947 Leucine rich repeat pr 96.9 0.00036 7.8E-09 67.5 1.6 42 348-389 403-444 (482)
67 KOG2123 Uncharacterized conser 96.9 4.6E-05 1E-09 65.1 -4.2 78 138-217 18-97 (388)
68 KOG2739 Leucine-rich acidic nu 96.6 0.0015 3.2E-08 55.7 2.4 111 91-202 41-160 (260)
69 PF13306 LRR_5: Leucine rich r 96.3 0.017 3.7E-07 44.6 7.0 79 113-194 10-90 (129)
70 PF13306 LRR_5: Leucine rich r 95.9 0.021 4.5E-07 44.1 5.7 107 130-242 3-112 (129)
71 PF00560 LRR_1: Leucine Rich R 95.3 0.0078 1.7E-07 30.4 0.8 19 187-205 2-20 (22)
72 PF00560 LRR_1: Leucine Rich R 94.9 0.0087 1.9E-07 30.3 0.4 17 141-157 2-18 (22)
73 PF13504 LRR_7: Leucine rich r 94.1 0.041 8.8E-07 25.8 1.6 16 186-201 2-17 (17)
74 KOG3864 Uncharacterized conser 93.4 0.023 4.9E-07 46.7 0.0 39 346-385 151-189 (221)
75 KOG3864 Uncharacterized conser 93.3 0.042 9E-07 45.2 1.4 42 346-387 125-166 (221)
76 smart00370 LRR Leucine-rich re 90.1 0.32 6.9E-06 25.5 2.2 19 185-203 2-20 (26)
77 smart00369 LRR_TYP Leucine-ric 90.1 0.32 6.9E-06 25.5 2.2 19 185-203 2-20 (26)
78 smart00369 LRR_TYP Leucine-ric 88.4 0.51 1.1E-05 24.7 2.2 18 116-133 3-20 (26)
79 smart00370 LRR Leucine-rich re 88.4 0.51 1.1E-05 24.7 2.2 18 116-133 3-20 (26)
80 KOG0473 Leucine-rich repeat pr 88.2 0.012 2.7E-07 49.3 -6.2 85 135-219 38-122 (326)
81 smart00367 LRR_CC Leucine-rich 86.9 0.31 6.6E-06 25.6 0.8 16 371-386 1-16 (26)
82 KOG0473 Leucine-rich repeat pr 84.6 0.033 7.2E-07 46.9 -5.5 94 113-207 40-134 (326)
83 smart00364 LRR_BAC Leucine-ric 73.4 2.4 5.2E-05 22.3 1.3 17 186-202 3-19 (26)
84 KOG4308 LRR-containing protein 69.4 0.089 1.9E-06 50.4 -8.3 177 95-280 89-302 (478)
85 KOG4308 LRR-containing protein 62.2 0.092 2E-06 50.3 -9.7 202 117-330 89-325 (478)
86 PF13516 LRR_6: Leucine Rich r 60.5 5.1 0.00011 20.3 1.0 13 139-151 2-14 (24)
87 smart00365 LRR_SD22 Leucine-ri 59.2 9 0.0002 20.1 1.8 15 185-199 2-16 (26)
88 smart00368 LRR_RI Leucine rich 47.0 17 0.00036 19.3 1.6 13 139-151 2-14 (28)
89 PF14162 YozD: YozD-like prote 35.7 38 0.00081 21.0 2.1 20 30-49 10-29 (57)
90 PF08362 TetR_C_3: YcdC-like p 29.8 33 0.00072 27.0 1.6 18 8-25 72-89 (143)
91 cd04443 DEP_GPR155 DEP (Dishev 27.7 1.4E+02 0.0029 21.0 4.2 39 6-51 31-69 (83)
92 KOG3763 mRNA export factor TAP 26.2 40 0.00087 32.7 1.7 63 113-176 216-284 (585)
93 COG3432 Predicted transcriptio 25.7 2.3E+02 0.0049 20.5 5.0 38 30-67 44-83 (95)
94 PF00392 GntR: Bacterial regul 23.9 2.1E+02 0.0045 18.5 4.4 45 10-54 7-61 (64)
95 KOG3763 mRNA export factor TAP 21.2 63 0.0014 31.5 1.9 84 289-380 217-309 (585)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-34 Score=286.67 Aligned_cols=242 Identities=34% Similarity=0.444 Sum_probs=204.0
Q ss_pred CCCccccHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhhcceeeecC---CcCeEEechHHHHHHHHHhc-----c
Q 047708 1 QEDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGG---KEGYVKMHDVVRYVAQQIAS-----K 72 (397)
Q Consensus 1 P~~~~~~~~~Li~~Wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~---~~~~~~~hd~~~~~~~~~~~-----~ 72 (397)
||||+|++++||.+||||||+++....+.+++.|.+|+.+|+++++++..+ ....|+|||++||+|.++++ +
T Consensus 423 PED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~ 502 (889)
T KOG4658|consen 423 PEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQE 502 (889)
T ss_pred CcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccc
Confidence 999999999999999999999886666779999999999999999999885 44689999999999999999 5
Q ss_pred cceEEecCCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCC--CcccChhhhcCCCcccEEEcCCCC
Q 047708 73 NKFMIKAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENS--LLVIPDRFFQGMKDLKVLDMGGIR 150 (397)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~ 150 (397)
+...+.++......+....+...|++++.++.+..++....+++|++|.+.+|. +..++..+|..++.|++||+++|.
T Consensus 503 e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~ 582 (889)
T KOG4658|consen 503 ENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS 582 (889)
T ss_pred cceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC
Confidence 556666555556678888889999999999999999888888899999999997 788888899999999999999876
Q ss_pred C-CCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCC-CccchhhhCCCCCCeeecCCCC-CCCCCchh
Q 047708 151 G-FSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDV-SEIPISFGRLSHLRLLDLTDCD-DLELIPRG 227 (397)
Q Consensus 151 ~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~lp~~i~~l~~L~~L~l~~~~-~~~~~~~~ 227 (397)
- ..+|..++.+.+||||+++++.+...|..++++.+|.+|++..+.. ..+|.....+.+|++|.+.... ..+..-.+
T Consensus 583 ~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~ 662 (889)
T KOG4658|consen 583 SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLK 662 (889)
T ss_pred ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHH
Confidence 5 8999999999999999999999987888999999999999998854 4566777779999999998743 11222222
Q ss_pred hhcCCCCCCEEEeec
Q 047708 228 VLSRLRKLEELYMSR 242 (397)
Q Consensus 228 ~~~~l~~L~~L~l~~ 242 (397)
.+.++.+|+.+....
T Consensus 663 el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 663 ELENLEHLENLSITI 677 (889)
T ss_pred hhhcccchhhheeec
Confidence 245566666666543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.95 E-value=3.6e-26 Score=238.96 Aligned_cols=370 Identities=19% Similarity=0.260 Sum_probs=240.6
Q ss_pred HHHHHHHHhhccccccccHHHHHH-------HHHHHHHHHhhcceeeecCCcCeEEechHHHHHHHHHhccc-------c
Q 047708 9 EVLARYGWGLRCLQNVDSVEKARG-------RARSAVSTLIFSYLLIDGGKEGYVKMHDVVRYVAQQIASKN-------K 74 (397)
Q Consensus 9 ~~Li~~Wia~g~i~~~~~~~~~~~-------~~~~~~~~L~~~~l~~~~~~~~~~~~hd~~~~~~~~~~~~~-------~ 74 (397)
.+-+.+|||..|..... +.+.. .++.-++.|++++|++.. .+.+.|||+++++|+.++.++ .
T Consensus 438 ~k~~Fl~ia~ff~~~~~--~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~ 513 (1153)
T PLN03210 438 DKAIFRHIACLFNGEKV--NDIKLLLANSDLDVNIGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGERE 513 (1153)
T ss_pred hhhhhheehhhcCCCCH--HHHHHHHHhcCCCchhChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcce
Confidence 45567888876643211 11111 112238889999999875 357999999999999998632 1
Q ss_pred eEEecC---------CccCC---------------C--CCccccccCceEEccCCCcc-------cCCCcC-CC-CCccE
Q 047708 75 FMIKAG---------VELKD---------------W--PSINKFEDLTGISLMFNDIH-------EVPDEL-EC-PKLQA 119 (397)
Q Consensus 75 ~~~~~~---------~~~~~---------------~--~~~~~~~~l~~l~l~~~~~~-------~~~~~~-~~-~~L~~ 119 (397)
+.+... ..... + .....+++|+.|.+..+... .+|..+ .+ .+|+.
T Consensus 514 ~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~ 593 (1153)
T PLN03210 514 FLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRL 593 (1153)
T ss_pred eEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEE
Confidence 221110 00000 0 01234667777777554321 144444 22 46888
Q ss_pred EEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCC-CCC
Q 047708 120 LLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKS-DVS 198 (397)
Q Consensus 120 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~ 198 (397)
|.+.++.+..+|..+ .+.+|+.|++.++.+..+|..+..+++|++|+++++.....+|.++.+++|++|++.+| .+.
T Consensus 594 L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~ 671 (1153)
T PLN03210 594 LRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV 671 (1153)
T ss_pred EEecCCCCCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc
Confidence 888888888888764 56888999999888888888888889999999988876677777888889999999887 566
Q ss_pred ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCC---------ccCccccccc------
Q 047708 199 EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEE---------DSSSNAKFIE------ 263 (397)
Q Consensus 199 ~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---------~~~~~~~~~~------ 263 (397)
.+|..++++++|+.|++++|..++.+|.. + ++++|+.|++++|.....+|... ......++..
T Consensus 672 ~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L 749 (1153)
T PLN03210 672 ELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENL 749 (1153)
T ss_pred ccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccccccccc
Confidence 88888888899999999888888888875 2 67778888887775444333110 0000000000
Q ss_pred ------------------------cCCCCCCCEEEEeccC-CCCCCCccc-CCCccEEEEEecCcccchhhhH-HHHhh-
Q 047708 264 ------------------------LGSLSRLTSLHIHIPN-GKIMSSDMS-FQNLTSFSITIGDLAAGFISAA-IEVFS- 315 (397)
Q Consensus 264 ------------------------l~~l~~L~~L~l~~~~-~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~l~- 315 (397)
....++|+.|++++|. ...+|.+++ +++|+.|+++.|......+... +..|.
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~ 829 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLES 829 (1153)
T ss_pred ccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCE
Confidence 0012345555555554 445565555 6666666666554332211100 00000
Q ss_pred ---------hhcccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCc
Q 047708 316 ---------RKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEM 385 (397)
Q Consensus 316 ---------~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L 385 (397)
..++..+.+++.|++ ++.+..+|.++..+ ++|++|++++|++++.++.. ...+++|+.|++.+|+.|
T Consensus 830 L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l-~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 830 LDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKF-SNLSFLDMNGCNNLQRVSLN--ISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred EECCCCCccccccccccccCEeECCCCCCccChHHHhcC-CCCCEEECCCCCCcCccCcc--cccccCCCeeecCCCccc
Confidence 001112456788888 77888999999888 69999999999999998643 358899999999999999
Q ss_pred eEee
Q 047708 386 KCLL 389 (397)
Q Consensus 386 ~~i~ 389 (397)
+.++
T Consensus 907 ~~~~ 910 (1153)
T PLN03210 907 TEAS 910 (1153)
T ss_pred cccc
Confidence 8664
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=2.2e-23 Score=217.42 Aligned_cols=157 Identities=29% Similarity=0.400 Sum_probs=118.8
Q ss_pred ccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCc-ccChhhhcCCCcccEEEcCCCCC-CCCChhhcCcccCcEEE
Q 047708 91 KFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLL-VIPDRFFQGMKDLKVLDMGGIRG-FSLPSSLSFLINLRTLS 168 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~-~~l~~~~~~l~~L~~L~ 168 (397)
.+++|++|++++|.+.+..+...+++|++|++++|.+. .+|.. ++.+++|++|++++|.+ ..+|..++++++|++|+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 67888888888888876333346778888888888854 44444 57888888888888877 56777888888888888
Q ss_pred ccCccCcCCCc-cccCCCCCCEEEccCCCCC-ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708 169 LHDCRRFGDLP-LIGELSLLEILDLSKSDVS-EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH 246 (397)
Q Consensus 169 l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 246 (397)
+++|.+.+..| .++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+.
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeee
Confidence 88888766555 7788888888888888776 67778888888888888886555566665 777888888888877776
Q ss_pred ccc
Q 047708 247 WQF 249 (397)
Q Consensus 247 ~~~ 249 (397)
+.+
T Consensus 274 ~~~ 276 (968)
T PLN00113 274 GPI 276 (968)
T ss_pred ccC
Confidence 643
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=2.1e-23 Score=217.64 Aligned_cols=158 Identities=23% Similarity=0.351 Sum_probs=135.2
Q ss_pred ccccccCceEEccCCCccc-CCCcC--CCCCccEEEccCCCCc-ccChhhhcCCCcccEEEcCCCCC-CCCChhhcCccc
Q 047708 89 INKFEDLTGISLMFNDIHE-VPDEL--ECPKLQALLLQENSLL-VIPDRFFQGMKDLKVLDMGGIRG-FSLPSSLSFLIN 163 (397)
Q Consensus 89 ~~~~~~l~~l~l~~~~~~~-~~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~-~~l~~~~~~l~~ 163 (397)
...+++|+.|++++|.+.. +|... .+++|+.|++++|.+. .+|. +.+++|++|++++|.+ ..+|..++.+++
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCC
Confidence 4578899999999999874 77654 7899999999999854 4553 5789999999999998 477889999999
Q ss_pred CcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCC-ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEee
Q 047708 164 LRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS-EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241 (397)
Q Consensus 164 L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 241 (397)
|++|++++|.+.+..| .++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|+++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~ 244 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLV 244 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECc
Confidence 9999999999876666 8899999999999999877 78999999999999999997666677876 8999999999999
Q ss_pred ccccccccc
Q 047708 242 RSFHHWQFE 250 (397)
Q Consensus 242 ~~~~~~~~~ 250 (397)
+|.+.+.+|
T Consensus 245 ~n~l~~~~p 253 (968)
T PLN00113 245 YNNLTGPIP 253 (968)
T ss_pred CceeccccC
Confidence 999887544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.8e-24 Score=198.50 Aligned_cols=281 Identities=22% Similarity=0.276 Sum_probs=190.3
Q ss_pred CCccccccCceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCc
Q 047708 87 PSINKFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLR 165 (397)
Q Consensus 87 ~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~ 165 (397)
+.+..++.|+.|++++|++..+|... ..+++-.|++++|.+..+|..+|-++.-|-+|||++|.++.+|+.+..+.+|+
T Consensus 97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhh
Confidence 34456778888888888888888777 67778888888888888888888888888888888888888888888888888
Q ss_pred EEEccCccCcCC-CccccCCCCCCEEEccCCCCC--ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeec
Q 047708 166 TLSLHDCRRFGD-LPLIGELSLLEILDLSKSDVS--EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242 (397)
Q Consensus 166 ~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 242 (397)
+|.+++|.+... +..+..+++|+.|.+++++-+ .+|..+..+.+|+.++++. +.+..+|.. +-++++|+.|++++
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPec-ly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPEC-LYKLRNLRRLNLSG 254 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHH-HhhhhhhheeccCc
Confidence 888888876322 224555666677777776443 6677777777777777776 666667765 66777777777777
Q ss_pred ccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccc
Q 047708 243 SFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKR 321 (397)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~ 321 (397)
|.++. .-...+.-.+|++|+++.|++..+|+.+. ++.|+.|.+..|...-.-++ +.+++
T Consensus 255 N~ite------------L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiP---SGIGK----- 314 (1255)
T KOG0444|consen 255 NKITE------------LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIP---SGIGK----- 314 (1255)
T ss_pred Cceee------------eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCc---cchhh-----
Confidence 77653 12223334566677777777777776666 67777766665554322222 23333
Q ss_pred cccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEeecCCc
Q 047708 322 CSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNSLE 393 (397)
Q Consensus 322 ~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~~~~~ 393 (397)
+..|+.+.. ++.+.-+|.++... ..|+.|.|. |+.|-.+|..+ .-+|.|+.|++..+|+|-.=|.+..
T Consensus 315 L~~Levf~aanN~LElVPEglcRC-~kL~kL~L~-~NrLiTLPeaI--HlL~~l~vLDlreNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 315 LIQLEVFHAANNKLELVPEGLCRC-VKLQKLKLD-HNRLITLPEAI--HLLPDLKVLDLRENPNLVMPPKPND 383 (1255)
T ss_pred hhhhHHHHhhccccccCchhhhhh-HHHHHhccc-ccceeechhhh--hhcCCcceeeccCCcCccCCCCcch
Confidence 344555555 66666677777766 377777776 46666666433 2567777777777777766555543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=8e-24 Score=194.27 Aligned_cols=276 Identities=21% Similarity=0.287 Sum_probs=229.1
Q ss_pred CccccccCceEEccCCCccc--CCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhc-Cccc
Q 047708 88 SINKFEDLTGISLMFNDIHE--VPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLS-FLIN 163 (397)
Q Consensus 88 ~~~~~~~l~~l~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~-~l~~ 163 (397)
....++.||.+.+..|++.. +|..+ .+..|+.|+++.|.+...|..+ ...+++-+|+|++|+++.+|..+. +++.
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTD 151 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhh-hhhcCcEEEEcccCccccCCchHHHhhHh
Confidence 34567888999999998764 88776 8999999999999999999874 888999999999999999998654 6999
Q ss_pred CcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccc-hhhhCCCCCCeeecCCCCC-CCCCchhhhcCCCCCCEEEee
Q 047708 164 LRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP-ISFGRLSHLRLLDLTDCDD-LELIPRGVLSRLRKLEELYMS 241 (397)
Q Consensus 164 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~ 241 (397)
|-+|++++|.+...||.+.++.+|++|++++|.+.... ..+..+++|++|.+++.+. +..+|.+ +..+.+|+.++++
T Consensus 152 LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLS 230 (1255)
T ss_pred HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhcccc
Confidence 99999999999889999999999999999999766221 3455788899999987332 3468887 8899999999999
Q ss_pred cccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhccc
Q 047708 242 RSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKK 320 (397)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~ 320 (397)
.|.+. .+++.+.++++|+.|++++|.++.+....+ ..+|++|+++.|.... ++ +.+.+
T Consensus 231 ~N~Lp------------~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~--LP---~avcK---- 289 (1255)
T KOG0444|consen 231 ENNLP------------IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV--LP---DAVCK---- 289 (1255)
T ss_pred ccCCC------------cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc--ch---HHHhh----
Confidence 99886 467888999999999999999999988888 9999999999887652 22 45555
Q ss_pred ccccccceec-cccc--ccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEeecCC
Q 047708 321 RCSRAMGLSQ-DMRI--SGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNSL 392 (397)
Q Consensus 321 ~~~~L~~L~l-~~~~--~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~~~~ 392 (397)
+++|++|.. ++.+ ..+|++|+.+. +|+.+..++ +.|+-+|..+ ..+++|+.|.+.. ..|-.+|++.
T Consensus 290 -L~kL~kLy~n~NkL~FeGiPSGIGKL~-~Levf~aan-N~LElVPEgl--cRC~kL~kL~L~~-NrLiTLPeaI 358 (1255)
T KOG0444|consen 290 -LTKLTKLYANNNKLTFEGIPSGIGKLI-QLEVFHAAN-NKLELVPEGL--CRCVKLQKLKLDH-NRLITLPEAI 358 (1255)
T ss_pred -hHHHHHHHhccCcccccCCccchhhhh-hhHHHHhhc-cccccCchhh--hhhHHHHHhcccc-cceeechhhh
Confidence 777999999 5555 47999999995 999999997 8888877533 4789999999965 4778888764
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=6.4e-22 Score=180.36 Aligned_cols=289 Identities=21% Similarity=0.218 Sum_probs=158.3
Q ss_pred cccccCceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEE
Q 047708 90 NKFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTL 167 (397)
Q Consensus 90 ~~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L 167 (397)
.++++|+.+++..|.++.+|... -..+|+.|++.+|.+..+...-+.-++.||+|||+.|.+..+|. ++..-.++++|
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence 45666777777777777777666 34457777777777666666556667777777777777766654 34444677777
Q ss_pred EccCccCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccc
Q 047708 168 SLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFH 245 (397)
Q Consensus 168 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 245 (397)
++++|.++..-. .+..+.+|.+|.+++|.++.+|. .|.++++|+.|++.. +.++.+..-.|..+++|+.|.+..|.+
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhcCc
Confidence 777777755443 66677777777777777777765 444577777777776 444443222245555555555555554
Q ss_pred cccccCC-------------CccCccccccccCCCCCCCEEEEeccCCCCCCC-ccc-CCCccEEEEEecCcccchhhhH
Q 047708 246 HWQFEGE-------------EDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSS-DMS-FQNLTSFSITIGDLAAGFISAA 310 (397)
Q Consensus 246 ~~~~~~~-------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~~~L~~L~l~~~~~~~~~~~~~ 310 (397)
...-... .+....-.-..+-++++|+.|+++.|.+..+.. ... +++|+.|+++.|......
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~---- 333 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD---- 333 (873)
T ss_pred ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC----
Confidence 4311000 000000111223345555555555555433321 233 555555555554432110
Q ss_pred HHHhhhhcccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhc--cccCCCCCccEEEEeccCCceE
Q 047708 311 IEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSD--LANDGFNELMFLGIFGCNEMKC 387 (397)
Q Consensus 311 ~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~~~~L~~L~i~~c~~L~~ 387 (397)
.+++.. +..|+.|.+ .++++.+-.+.+...++|++|+|++ +.+.-...+ ....++|+|+.|.+.|+ .|+.
T Consensus 334 ~~sf~~-----L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~ 406 (873)
T KOG4194|consen 334 EGSFRV-----LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKS 406 (873)
T ss_pred hhHHHH-----HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecCc-eeee
Confidence 012222 444555555 5555555544444446666666665 322211111 12235788888888776 4666
Q ss_pred eec
Q 047708 388 LLN 390 (397)
Q Consensus 388 i~~ 390 (397)
|+.
T Consensus 407 I~k 409 (873)
T KOG4194|consen 407 IPK 409 (873)
T ss_pred cch
Confidence 664
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=3.8e-22 Score=181.82 Aligned_cols=272 Identities=20% Similarity=0.222 Sum_probs=178.1
Q ss_pred ccCceEEccCCCcccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEEEc
Q 047708 93 EDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSL 169 (397)
Q Consensus 93 ~~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l 169 (397)
+.+++|+++.|.++.++... .-.+++.|++++|+++++....|..+.+|.+|.|+.|.+..+|. .+.++++|+.|++
T Consensus 149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 34444444444444433222 23445555555555555555555555555555555555555544 2333555555555
Q ss_pred cCccCcCCC-ccccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccc
Q 047708 170 HDCRRFGDL-PLIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHW 247 (397)
Q Consensus 170 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 247 (397)
..|.+...- -.+..|++|+.|.+..|++..+.+ .|..+.++++|++.. +.+..+..+.+-.++.|+.|++++|.+..
T Consensus 229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQR 307 (873)
T ss_pred cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccchhhhhe
Confidence 555542221 145555555666666665555543 455677777777777 56666666667778888888888887765
Q ss_pred cccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc-cc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccc
Q 047708 248 QFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-MS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRA 325 (397)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L 325 (397)
..++...-+++|+.|+++.|++..++.. +. +..|+.|+++.|. ++++.+..|...++|
T Consensus 308 -----------ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns---------i~~l~e~af~~lssL 367 (873)
T KOG4194|consen 308 -----------IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS---------IDHLAEGAFVGLSSL 367 (873)
T ss_pred -----------eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc---------hHHHHhhHHHHhhhh
Confidence 3456677789999999999999998877 45 8999999999877 456666666678999
Q ss_pred cceec-cccccc-c---hHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEee
Q 047708 326 MGLSQ-DMRISG-V---HSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLL 389 (397)
Q Consensus 326 ~~L~l-~~~~~~-l---p~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~ 389 (397)
++|++ .+.+.. + ...+..+ ++|+.|.+.+ ++++.++... ..+|++|++|++.+++ +.+|.
T Consensus 368 ~~LdLr~N~ls~~IEDaa~~f~gl-~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~Na-iaSIq 432 (873)
T KOG4194|consen 368 HKLDLRSNELSWCIEDAAVAFNGL-PSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGDNA-IASIQ 432 (873)
T ss_pred hhhcCcCCeEEEEEecchhhhccc-hhhhheeecC-ceeeecchhh-hccCcccceecCCCCc-ceeec
Confidence 99999 666541 2 2223334 7999999998 8999998544 4699999999998875 45543
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=2.2e-22 Score=175.70 Aligned_cols=259 Identities=24% Similarity=0.314 Sum_probs=219.4
Q ss_pred CceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCcc
Q 047708 95 LTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCR 173 (397)
Q Consensus 95 l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 173 (397)
+..+.+++|++..+.+.. ++..|.+|.+.+|....+|+++ +.+..++.++++.+++..+|..++.+.+|+.++.+.+.
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence 567788888888765555 8889999999999988888875 88888999999999999999999999999999999999
Q ss_pred CcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCC
Q 047708 174 RFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEE 253 (397)
Q Consensus 174 ~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 253 (397)
+...+++++.+..|+.++..+|++..+|.++.++.+|..+++.+ +.++.+|+..+. |+.|++++...|.+.
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~-m~~L~~ld~~~N~L~------- 196 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIA-MKRLKHLDCNSNLLE------- 196 (565)
T ss_pred eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHH-HHHHHhcccchhhhh-------
Confidence 98888899999999999999999999999999999999999998 777888887555 999999998877765
Q ss_pred ccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-c
Q 047708 254 DSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-D 331 (397)
Q Consensus 254 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~ 331 (397)
.++++++.+.+|.-|++..|.+..+| .+. |..|..|+++.+. ++.++.......+++..|++ .
T Consensus 197 -----tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~---------i~~lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 197 -----TLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ---------IEMLPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred -----cCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH---------HHhhHHHHhcccccceeeeccc
Confidence 46889999999999999999999999 555 9999999888665 33444433345788899999 8
Q ss_pred cccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708 332 MRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN 383 (397)
Q Consensus 332 ~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~ 383 (397)
+.+.++|+.+.-+ ++|++||+++ +.+..++. ..|++ .|+.|-+.|+|
T Consensus 262 Nklke~Pde~clL-rsL~rLDlSN-N~is~Lp~--sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 262 NKLKEVPDEICLL-RSLERLDLSN-NDISSLPY--SLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccccCchHHHHh-hhhhhhcccC-CccccCCc--ccccc-eeeehhhcCCc
Confidence 9999999999888 7999999997 88888864 44588 89999999987
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=4e-21 Score=167.87 Aligned_cols=279 Identities=21% Similarity=0.281 Sum_probs=205.5
Q ss_pred ccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEE
Q 047708 89 INKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLS 168 (397)
Q Consensus 89 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~ 168 (397)
.+.++++..|++..|++..+|++-.|+.|..|.++.|.+..+|....+.+.++.+||+..|++.++|+.++.+++|.+||
T Consensus 202 lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLD 281 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLD 281 (565)
T ss_pred hcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhc
Confidence 35666777778888888888876688888888888888888888877789999999999999999999999999999999
Q ss_pred ccCccCcCCCccccCCCCCCEEEccCCCCCccc------------------------------------------hhhhC
Q 047708 169 LHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP------------------------------------------ISFGR 206 (397)
Q Consensus 169 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp------------------------------------------~~i~~ 206 (397)
+++|.+++.++.++++ +|+.|.+.+|.+..+- .++..
T Consensus 282 lSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~ 360 (565)
T KOG0472|consen 282 LSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYA 360 (565)
T ss_pred ccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhh
Confidence 9999998888889998 8888888877653221 11223
Q ss_pred CCCCCeeecCCCCCCCCCchhhhcCCC--CCCEEEeecccccccccCC-------------CccCccccccccCCCCCCC
Q 047708 207 LSHLRLLDLTDCDDLELIPRGVLSRLR--KLEELYMSRSFHHWQFEGE-------------EDSSSNAKFIELGSLSRLT 271 (397)
Q Consensus 207 l~~L~~L~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~-------------~~~~~~~~~~~l~~l~~L~ 271 (397)
+.+.+.|++++ .+++.+|.++|..-. -...+++++|.+.. +|.. .+....-++..++.+++|.
T Consensus 361 ~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt 438 (565)
T KOG0472|consen 361 IITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLT 438 (565)
T ss_pred hhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcce
Confidence 34566777777 777888877554322 35667777776542 3332 1222234556788899999
Q ss_pred EEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHH-HHHHHhhc
Q 047708 272 SLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSW-IKNLLLRS 348 (397)
Q Consensus 272 ~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~-~~~~~~~L 348 (397)
-|++++|-..++|...+ +..|+.|+++.+..- .+++ +.+.+-.++.+-. ++.++.+|.. +..+ ++|
T Consensus 439 ~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr---------~lP~-~~y~lq~lEtllas~nqi~~vd~~~l~nm-~nL 507 (565)
T KOG0472|consen 439 FLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR---------MLPE-CLYELQTLETLLASNNQIGSVDPSGLKNM-RNL 507 (565)
T ss_pred eeecccchhhhcchhhhhhhhhheecccccccc---------cchH-HHhhHHHHHHHHhccccccccChHHhhhh-hhc
Confidence 99999999999999988 888999999988432 1111 0000222233333 6778888765 7777 799
Q ss_pred cceecccCCChhhhhhccccCCCCCccEEEEeccCC
Q 047708 349 EILALVDVNDLENIVSDLANDGFNELMFLGIFGCNE 384 (397)
Q Consensus 349 ~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~ 384 (397)
..|++.+ +.++.+|..+ |++.+|++|+++|+|-
T Consensus 508 ~tLDL~n-Ndlq~IPp~L--gnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 508 TTLDLQN-NDLQQIPPIL--GNMTNLRHLELDGNPF 540 (565)
T ss_pred ceeccCC-CchhhCChhh--ccccceeEEEecCCcc
Confidence 9999997 8899987544 6999999999999974
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=6.5e-18 Score=177.29 Aligned_cols=277 Identities=19% Similarity=0.242 Sum_probs=140.2
Q ss_pred ccccCceEEccCCCcccCCCcC-CCCCccEEEccCCC-CcccChhhhcCCCcccEEEcCCCCC-CCCChhhcCcccCcEE
Q 047708 91 KFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENS-LLVIPDRFFQGMKDLKVLDMGGIRG-FSLPSSLSFLINLRTL 167 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~~~~~l~~L~~L 167 (397)
...+|+.|++.++.+..++... .+++|+.|+++++. +..+|. +..+++|++|++++|.. ..+|..++.+.+|++|
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 3345555555555554444433 45555555555544 444443 34455555555555432 4455555555555555
Q ss_pred EccCccCcCCCccccCCCCCCEEEccCCC-CCccchhhhCCCCCCeeecCCCCCCCCCchhh------------------
Q 047708 168 SLHDCRRFGDLPLIGELSLLEILDLSKSD-VSEIPISFGRLSHLRLLDLTDCDDLELIPRGV------------------ 228 (397)
Q Consensus 168 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~------------------ 228 (397)
++++|.....+|...++++|+.|++++|. +..+|.. ..+|+.|++++ +.++.+|...
T Consensus 687 ~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~-n~i~~lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 687 DMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDE-TAIEEFPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred eCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCC-Cccccccccccccccccccccccchhhc
Confidence 55555443333322244444444444442 1122211 11223333332 1122222210
Q ss_pred -----------hcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccC-CCCCCCcccCCCccEEE
Q 047708 229 -----------LSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPN-GKIMSSDMSFQNLTSFS 296 (397)
Q Consensus 229 -----------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~ 296 (397)
....++|+.|++++|.... .++..++++++|+.|++++|. .+.+|..+.+++|+.|+
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~-----------~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~ 831 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLV-----------ELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLD 831 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCcc-----------ccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEE
Confidence 0012344555555554433 334556666777777776654 55666555566666666
Q ss_pred EEecCcccchhh------------hHHHHhhhhcccccccccceec--ccccccchHHHHHHHhhccceecccCCChhhh
Q 047708 297 ITIGDLAAGFIS------------AAIEVFSRKFKKRCSRAMGLSQ--DMRISGVHSWIKNLLLRSEILALVDVNDLENI 362 (397)
Q Consensus 297 l~~~~~~~~~~~------------~~~~~l~~~~~~~~~~L~~L~l--~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l 362 (397)
+++|........ ..+..++.. ....++|+.|++ +..+..+|..+..+ ++|+.+++++|..|+.+
T Consensus 832 Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~s-i~~l~~L~~L~L~~C~~L~~l~~~~~~L-~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 832 LSGCSRLRTFPDISTNISDLNLSRTGIEEVPWW-IEKFSNLSFLDMNGCNNLQRVSLNISKL-KHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCCCccccccccccccCEeECCCCCCccChHH-HhcCCCCCEEECCCCCCcCccCcccccc-cCCCeeecCCCcccccc
Confidence 666544321110 001111111 112778899988 57788888877777 69999999999999865
Q ss_pred hhcc-----------ccCCCCCccEEEEeccCCce
Q 047708 363 VSDL-----------ANDGFNELMFLGIFGCNEMK 386 (397)
Q Consensus 363 ~~~~-----------~~~~~~~L~~L~i~~c~~L~ 386 (397)
.... ....+|....+.+.+|.+|.
T Consensus 910 ~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 910 SWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred cCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 3211 01235555666777777765
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=6.2e-20 Score=142.55 Aligned_cols=169 Identities=28% Similarity=0.420 Sum_probs=140.8
Q ss_pred cccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCC
Q 047708 105 IHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGEL 184 (397)
Q Consensus 105 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l 184 (397)
+.+++..++++..+.|.+++|.+..+|+.+ ..+++|++|++++|+++++|.++..++.|+.|++.-|.+...+..++.+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 344566667777777788888877777774 7888899999999988889988999999999998888876666688999
Q ss_pred CCCCEEEccCCCCC--ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCcccccc
Q 047708 185 SLLEILDLSKSDVS--EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFI 262 (397)
Q Consensus 185 ~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 262 (397)
+-|+.||+..|++. .+|..+..++.|+-|++++ +.+.-+|+. ++++++|+.|.+..|.+. ..+.
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll------------~lpk 167 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLL------------SLPK 167 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchh------------hCcH
Confidence 99999999888776 7888888888999999988 788888888 899999999999888876 4678
Q ss_pred ccCCCCCCCEEEEeccCCCCCCCccc
Q 047708 263 ELGSLSRLTSLHIHIPNGKIMSSDMS 288 (397)
Q Consensus 263 ~l~~l~~L~~L~l~~~~~~~~~~~~~ 288 (397)
+++.++.|++|.|.+|+...+|..++
T Consensus 168 eig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred HHHHHHHHHHHhcccceeeecChhhh
Confidence 88899999999999999888886655
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=9.3e-17 Score=158.59 Aligned_cols=245 Identities=16% Similarity=0.179 Sum_probs=167.9
Q ss_pred cCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCcc
Q 047708 94 DLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCR 173 (397)
Q Consensus 94 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 173 (397)
+...|.+.++.++.+|..+ .+.|+.|++++|.+..+|..++ .+|++|++++|.+..+|..+. .+|+.|++++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 4567888887777777654 3568888888888778876543 478888888888877776553 468888888888
Q ss_pred CcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCC
Q 047708 174 RFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEE 253 (397)
Q Consensus 174 ~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 253 (397)
+...+..+. .+|+.|++++|.++.+|..+. .+|++|++++ +.++.+|.. +. ++|+.|++++|.+.. +
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~-L---- 319 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-LP--SGITHLNVQSNSLTA-L---- 319 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCccc-ch--hhHHHHHhcCCcccc-C----
Confidence 765544443 478888888888888877554 4788888888 466667654 22 467788888877763 1
Q ss_pred ccCccccccccCCCCCCCEEEEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-cc
Q 047708 254 DSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DM 332 (397)
Q Consensus 254 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~ 332 (397)
+..+ .++|+.|++++|.+..+|..+ +++|+.|+++.|.... ++. ..++.|+.|++ ++
T Consensus 320 -------P~~l--~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~L~~---------LP~---~lp~~L~~LdLs~N 377 (754)
T PRK15370 320 -------PETL--PPGLKTLEAGENALTSLPASL-PPELQVLDVSKNQITV---------LPE---TLPPTITTLDVSRN 377 (754)
T ss_pred -------Cccc--cccceeccccCCccccCChhh-cCcccEEECCCCCCCc---------CCh---hhcCCcCEEECCCC
Confidence 1222 257888888888877777544 4678888888775431 111 11357888888 77
Q ss_pred ccccchHHHHHHHhhccceecccCCChhhhhhcc--ccCCCCCccEEEEeccC
Q 047708 333 RISGVHSWIKNLLLRSEILALVDVNDLENIVSDL--ANDGFNELMFLGIFGCN 383 (397)
Q Consensus 333 ~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~~~~L~~L~i~~c~ 383 (397)
.+..+|..+. .+|+.|++++ +.+..+|..+ ....+|++..|.+.++|
T Consensus 378 ~Lt~LP~~l~---~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 378 ALTNLPENLP---AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred cCCCCCHhHH---HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 7777887654 3688888887 5666665322 12345778888888876
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=1.7e-18 Score=165.98 Aligned_cols=243 Identities=20% Similarity=0.260 Sum_probs=157.0
Q ss_pred CCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccC
Q 047708 115 PKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSK 194 (397)
Q Consensus 115 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 194 (397)
.+|+.++++.+.+..+| ++...+.+|..++..+|.+..+|..+..+++|++|.+..|.+...++...++++|++|++..
T Consensus 241 ~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 44555555555555555 44455555555555555555555555555555555555555544444555555555555555
Q ss_pred CCCCccchhhhCCC--CCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCE
Q 047708 195 SDVSEIPISFGRLS--HLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTS 272 (397)
Q Consensus 195 ~~~~~lp~~i~~l~--~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 272 (397)
|.+..+|..+-... .|+.|..+. +.+...|...-..++.|+.|++.+|.++. ..++.+.+..+|+.
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd-----------~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTD-----------SCFPVLVNFKHLKV 387 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccc-----------cchhhhccccceee
Confidence 55555554222111 133343333 33333332111234567777777777766 66788899999999
Q ss_pred EEEeccCCCCCCCcc-c-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhcc
Q 047708 273 LHIHIPNGKIMSSDM-S-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSE 349 (397)
Q Consensus 273 L~l~~~~~~~~~~~~-~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~ 349 (397)
|++++|++..+|+.. . +..|+.|++++|....- ...+.. +..|+.|.. ++.+..+| .+..+ +.|+
T Consensus 388 LhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-----p~tva~-----~~~L~tL~ahsN~l~~fP-e~~~l-~qL~ 455 (1081)
T KOG0618|consen 388 LHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-----PDTVAN-----LGRLHTLRAHSNQLLSFP-ELAQL-PQLK 455 (1081)
T ss_pred eeecccccccCCHHHHhchHHhHHHhcccchhhhh-----hHHHHh-----hhhhHHHhhcCCceeech-hhhhc-Ccce
Confidence 999999999999884 4 99999999998875422 123444 778899988 88889999 66666 6999
Q ss_pred ceecccCCChhhhhhccccCCCCCccEEEEeccCC
Q 047708 350 ILALVDVNDLENIVSDLANDGFNELMFLGIFGCNE 384 (397)
Q Consensus 350 ~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~ 384 (397)
.+|++ |++|+.......... |+||+|++.|++.
T Consensus 456 ~lDlS-~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 456 VLDLS-CNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred EEecc-cchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 99998 699988753332222 7899999999874
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.69 E-value=7.6e-16 Score=151.44 Aligned_cols=148 Identities=21% Similarity=0.150 Sum_probs=98.9
Q ss_pred cCCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhh
Q 047708 79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSL 158 (397)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~ 158 (397)
....+..+|.. -.++++.|++..|+++.+|.. .++|+.|++++|.+..+|. ..++|+.|++++|.+..+|..
T Consensus 209 s~~~LtsLP~~-l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N~L~~Lp~l- 280 (788)
T PRK15387 209 GESGLTTLPDC-LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPAL- 280 (788)
T ss_pred CCCCCCcCCcc-hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccC----cccccceeeccCCchhhhhhc-
Confidence 34455555553 235788888888888887763 5788889998888777764 246788888888877666652
Q ss_pred cCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEE
Q 047708 159 SFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEEL 238 (397)
Q Consensus 159 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 238 (397)
..+|+.|++++|.+...+. ..++|+.|++++|.++.+|... .+|+.|.+++ +.++.+|. + ..+|+.|
T Consensus 281 --p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~-N~L~~LP~--l--p~~Lq~L 347 (788)
T PRK15387 281 --PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALP---SELCKLWAYN-NQLTSLPT--L--PSGLQEL 347 (788)
T ss_pred --hhhcCEEECcCCccccccc---cccccceeECCCCccccCCCCc---cccccccccc-Cccccccc--c--ccccceE
Confidence 2457777888887755443 2367888888888777776532 3466666666 45555553 1 1467777
Q ss_pred Eeecccccc
Q 047708 239 YMSRSFHHW 247 (397)
Q Consensus 239 ~l~~~~~~~ 247 (397)
++++|.+..
T Consensus 348 dLS~N~Ls~ 356 (788)
T PRK15387 348 SVSDNQLAS 356 (788)
T ss_pred ecCCCccCC
Confidence 777777653
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.3e-18 Score=135.30 Aligned_cols=162 Identities=25% Similarity=0.417 Sum_probs=142.8
Q ss_pred cCCCCCccccccCceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCc
Q 047708 83 LKDWPSINKFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFL 161 (397)
Q Consensus 83 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l 161 (397)
+.+++....++++++|.+++|.++.+|+.+ .+.+|+.|++.+|.+.++|.++ +.++.|+.|+++-|.+..+|..+|.+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCC
Confidence 445566667888999999999999988877 8999999999999999999885 89999999999999999999999999
Q ss_pred ccCcEEEccCccCcCC-Cc-cccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEE
Q 047708 162 INLRTLSLHDCRRFGD-LP-LIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELY 239 (397)
Q Consensus 162 ~~L~~L~l~~~~~~~~-~~-~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 239 (397)
+-|+.|++.+|++.+. .| .+-.+..|+.|+++.|.+..+|.+++++++|+.|.+.+ +.+-.+|.. ++.++.|++|.
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelh 179 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELH 179 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHh
Confidence 9999999999988643 34 77788899999999999999999999999999999999 666678887 89999999999
Q ss_pred eecccccc
Q 047708 240 MSRSFHHW 247 (397)
Q Consensus 240 l~~~~~~~ 247 (397)
+.+|.+..
T Consensus 180 iqgnrl~v 187 (264)
T KOG0617|consen 180 IQGNRLTV 187 (264)
T ss_pred cccceeee
Confidence 99999873
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=2.8e-15 Score=148.19 Aligned_cols=236 Identities=15% Similarity=0.183 Sum_probs=178.8
Q ss_pred CCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhc
Q 047708 80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLS 159 (397)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~ 159 (397)
+..+..+|.. -.++++.|++++|.+..+|... .++|+.|++++|.+..+|..+. .+|+.|++++|.+..+|..+.
T Consensus 187 ~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~ 261 (754)
T PRK15370 187 ILGLTTIPAC-IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITELPERLP 261 (754)
T ss_pred CCCcCcCCcc-cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhhh---ccccEEECcCCccCcCChhHh
Confidence 3445555543 2357999999999999988755 3689999999999888887543 479999999999998988765
Q ss_pred CcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEE
Q 047708 160 FLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELY 239 (397)
Q Consensus 160 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 239 (397)
.+|++|++++|.+...+..+. .+|+.|++++|.++.+|..+. .+|++|++++ +.+..+|.. + .++|+.|+
T Consensus 262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~-l--~~sL~~L~ 331 (754)
T PRK15370 262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPET-L--PPGLKTLE 331 (754)
T ss_pred --CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCcc-c--cccceecc
Confidence 589999999998876544443 589999999999999887654 4789999998 666777764 2 36899999
Q ss_pred eecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhhcc
Q 047708 240 MSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFK 319 (397)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~ 319 (397)
+.+|.++. + +..+ .++|+.|++++|++..+|..+ .++|+.|+++.|.... .++ .+
T Consensus 332 Ls~N~Lt~-L-----------P~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt~-LP~----~l----- 386 (754)
T PRK15370 332 AGENALTS-L-----------PASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSRNALTN-LPE----NL----- 386 (754)
T ss_pred ccCCcccc-C-----------Chhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCCC-CCH----hH-----
Confidence 99998764 2 2233 368999999999988887644 5789999999886442 111 12
Q ss_pred cccccccceec-ccccccchHHHHHHH---hhccceecccCC
Q 047708 320 KRCSRAMGLSQ-DMRISGVHSWIKNLL---LRSEILALVDVN 357 (397)
Q Consensus 320 ~~~~~L~~L~l-~~~~~~lp~~~~~~~---~~L~~L~l~~c~ 357 (397)
...|+.|++ ++.+..+|..+..+. +++..|++.+.+
T Consensus 387 --~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 387 --PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred --HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 235888888 788888887776653 467888888744
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=4e-14 Score=139.39 Aligned_cols=225 Identities=20% Similarity=0.129 Sum_probs=173.3
Q ss_pred CCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhc
Q 047708 80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLS 159 (397)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~ 159 (397)
.+.+..+|. ..++|+.|++++|.++.+|.. .++|+.|++++|.+..+|. -..+|+.|++++|.+..+|..
T Consensus 231 ~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~LP~~-- 300 (788)
T PRK15387 231 DNNLTSLPA--LPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL-- 300 (788)
T ss_pred CCcCCCCCC--CCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhh----chhhcCEEECcCCcccccccc--
Confidence 455666664 368899999999999998764 4789999999999877764 236788999999999888763
Q ss_pred CcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEE
Q 047708 160 FLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELY 239 (397)
Q Consensus 160 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 239 (397)
+++|++|++++|.+...++. ..+|+.|++++|.++.+|.. ..+|++|++++ +.++.+|.. .++|+.|+
T Consensus 301 -p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~-N~Ls~LP~l----p~~L~~L~ 368 (788)
T PRK15387 301 -PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSD-NQLASLPTL----PSELYKLW 368 (788)
T ss_pred -ccccceeECCCCccccCCCC---cccccccccccCcccccccc---ccccceEecCC-CccCCCCCC----Ccccceeh
Confidence 47899999999988765432 23578899999999988852 25899999999 777778762 35788899
Q ss_pred eecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhhcc
Q 047708 240 MSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFK 319 (397)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~ 319 (397)
+++|.+.. +| . ...+|+.|++++|.+..+|.. .++|+.|+++.|.... ++.
T Consensus 369 Ls~N~L~~-LP-----------~---l~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~Lss---------IP~--- 419 (788)
T PRK15387 369 AYNNRLTS-LP-----------A---LPSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTS---------LPM--- 419 (788)
T ss_pred hhcccccc-Cc-----------c---cccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCC---------CCc---
Confidence 99888764 22 1 135799999999998877743 4689999999886432 111
Q ss_pred cccccccceec-ccccccchHHHHHHHhhccceecccCC
Q 047708 320 KRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVN 357 (397)
Q Consensus 320 ~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~ 357 (397)
.+.+|+.|++ ++.++.+|..+..+ ++|+.|+|++++
T Consensus 420 -l~~~L~~L~Ls~NqLt~LP~sl~~L-~~L~~LdLs~N~ 456 (788)
T PRK15387 420 -LPSGLLSLSVYRNQLTRLPESLIHL-SSETTVNLEGNP 456 (788)
T ss_pred -chhhhhhhhhccCcccccChHHhhc-cCCCeEECCCCC
Confidence 1346788888 88899999998888 699999999854
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.53 E-value=1.5e-16 Score=152.93 Aligned_cols=263 Identities=19% Similarity=0.165 Sum_probs=179.0
Q ss_pred ccccCceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEc
Q 047708 91 KFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSL 169 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l 169 (397)
.-.+++.++++.+++..+|+.+ .+.+|+.+....|.+..+|..+ ..+.+|++|++..|.+..+|...+++++|++|++
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri-~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRI-SRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHH-hhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 4567899999999999999555 8999999999999998888875 6788999999999999999998999999999999
Q ss_pred cCccCcCCCc-cccCCCC-CCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708 170 HDCRRFGDLP-LIGELSL-LEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH 246 (397)
Q Consensus 170 ~~~~~~~~~~-~~~~l~~-L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 246 (397)
..|.+...++ .+..+.. |..|+.+.+.+..+|. +=..++.|+.|++.+ +.++.-.-..+.++++|+.|++++|.+.
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhhhccccceeeeeecccccc
Confidence 9999877766 4444443 6777777777776663 112345677777777 3333222122677777777777777665
Q ss_pred ccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccc
Q 047708 247 WQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRA 325 (397)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L 325 (397)
. --...+.++..|+.|.+++|.++.+|..+. ++.|+.|..+.|....+ ..+.. .+.|
T Consensus 397 ~-----------fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~f------Pe~~~-----l~qL 454 (1081)
T KOG0618|consen 397 S-----------FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSF------PELAQ-----LPQL 454 (1081)
T ss_pred c-----------CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeec------hhhhh-----cCcc
Confidence 3 112345667777777777777777777766 77777777666654433 13333 6667
Q ss_pred cceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEecc
Q 047708 326 MGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGC 382 (397)
Q Consensus 326 ~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c 382 (397)
+.+++ ++.++.+-.......++|++|++++...+. +....|+.++.+...+.
T Consensus 455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~-----~d~~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV-----FDHKTLKVLKSLSQMDI 507 (1081)
T ss_pred eEEecccchhhhhhhhhhCCCcccceeeccCCcccc-----cchhhhHHhhhhhheec
Confidence 77777 555553211111111588888888766432 22345555555555443
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.44 E-value=6.2e-15 Score=129.25 Aligned_cols=251 Identities=21% Similarity=0.202 Sum_probs=122.9
Q ss_pred cCceEEccCCCcccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCC-CCCCCCCh-hhcCcccCcEEEc
Q 047708 94 DLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG-IRGFSLPS-SLSFLINLRTLSL 169 (397)
Q Consensus 94 ~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l~~-~~~~l~~L~~L~l 169 (397)
....+.|..|.|+.+|+.. .+.+||.|+++.|.+..+.+..|.++++|..|-+.+ |.+..+|. .+++|..|+-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 4455566666666655544 556666666666665555555566665555554444 55555544 3455566665555
Q ss_pred cCccCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCC------------CchhhhcCCCCC
Q 047708 170 HDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLEL------------IPRGVLSRLRKL 235 (397)
Q Consensus 170 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~------------~~~~~~~~l~~L 235 (397)
..|.+..... .+..+++|..|.+..|.+..++. .+..+..++++.+..+..+.. .|.. ++...-.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsgarc~ 226 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGARCV 226 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-cccceec
Confidence 5555544333 45555666666666655555554 455555555555444221110 0000 0000000
Q ss_pred CEEEeecccccc-----------cccCC---Cc-cCccccccccCCCCCCCEEEEeccCCCCCCCc-cc-CCCccEEEEE
Q 047708 236 EELYMSRSFHHW-----------QFEGE---ED-SSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-MS-FQNLTSFSIT 298 (397)
Q Consensus 236 ~~L~l~~~~~~~-----------~~~~~---~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~ 298 (397)
.-..+.+.++.. ..+.. .. .....-...++.+++|++|++++|.++.+.+. +. ...++.|.+.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 000000000000 00000 00 00001122356677777777777776555443 44 6777777776
Q ss_pred ecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHH-HHHHHhhccceeccc
Q 047708 299 IGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSW-IKNLLLRSEILALVD 355 (397)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~-~~~~~~~L~~L~l~~ 355 (397)
.|. +..+...+|.....|+.|++ ++.++.+... +..+ .+|.+|.+-.
T Consensus 307 ~N~---------l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~-~~l~~l~l~~ 355 (498)
T KOG4237|consen 307 RNK---------LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL-FSLSTLNLLS 355 (498)
T ss_pred cch---------HHHHHHHhhhccccceeeeecCCeeEEEeccccccc-ceeeeeehcc
Confidence 655 34455555566777777777 6666644322 3333 3666666553
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.43 E-value=1.2e-14 Score=127.41 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=91.9
Q ss_pred CCccCCCCCc--cccccCceEEccCCCcccCCCc-C-CCCCccEEEccC-CCCcccChhhhcCCCcccEEEcCCCCCCCC
Q 047708 80 GVELKDWPSI--NKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQE-NSLLVIPDRFFQGMKDLKVLDMGGIRGFSL 154 (397)
Q Consensus 80 ~~~~~~~~~~--~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 154 (397)
.+.+..+|.. +.+++||+|+|+.|.|+.+.+. + .+..+.+|.+.+ |++.++|...|+++..|+-|.+.-+++..+
T Consensus 76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence 3445555544 5688999999999999986444 3 788888877766 779999999999999999999999998655
Q ss_pred -ChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCC
Q 047708 155 -PSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSD 196 (397)
Q Consensus 155 -~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 196 (397)
...+..+++|..|.+.+|.+..... .+..+..++++.+..+.
T Consensus 156 r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 4578889999999999998865554 66777777777665543
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.40 E-value=6.4e-13 Score=133.65 Aligned_cols=292 Identities=23% Similarity=0.208 Sum_probs=173.7
Q ss_pred CccCCCCCccccccCceEEccCCC--cccCCCc--CCCCCccEEEccCCC-CcccChhhhcCCCcccEEEcCCCCCCCCC
Q 047708 81 VELKDWPSINKFEDLTGISLMFND--IHEVPDE--LECPKLQALLLQENS-LLVIPDRFFQGMKDLKVLDMGGIRGFSLP 155 (397)
Q Consensus 81 ~~~~~~~~~~~~~~l~~l~l~~~~--~~~~~~~--~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 155 (397)
+.....+.....+++++|-+..+. +..++.. ..++.|++|++++|. ...+|..+ +.+-+||+|+++++.+..+|
T Consensus 533 ~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP 611 (889)
T KOG4658|consen 533 NKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLP 611 (889)
T ss_pred cchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccc
Confidence 344444555566789999999886 5666663 379999999999998 88899875 99999999999999999999
Q ss_pred hhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCC---ccchhhhCCCCCCeeecCCCCC-----------
Q 047708 156 SSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS---EIPISFGRLSHLRLLDLTDCDD----------- 220 (397)
Q Consensus 156 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~---~lp~~i~~l~~L~~L~l~~~~~----------- 220 (397)
..+++|..|.+|++..+.....++ ....|++|++|.+...... ..-..+..+.+|+.+....+..
T Consensus 612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~ 691 (889)
T KOG4658|consen 612 SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTR 691 (889)
T ss_pred hHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHH
Confidence 999999999999999988777777 4555999999999776532 1223445555555554433211
Q ss_pred --------------CCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccC---CCCCCCEEEEeccCCCCC
Q 047708 221 --------------LELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELG---SLSRLTSLHIHIPNGKIM 283 (397)
Q Consensus 221 --------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~ 283 (397)
....+.. ++.+.+|+.|.+..|....... ....... .++++..+.+..+.....
T Consensus 692 L~~~~~~l~~~~~~~~~~~~~-~~~l~~L~~L~i~~~~~~e~~~--------~~~~~~~~~~~f~~l~~~~~~~~~~~r~ 762 (889)
T KOG4658|consen 692 LRSLLQSLSIEGCSKRTLISS-LGSLGNLEELSILDCGISEIVI--------EWEESLIVLLCFPNLSKVSILNCHMLRD 762 (889)
T ss_pred HHHHhHhhhhcccccceeecc-cccccCcceEEEEcCCCchhhc--------ccccccchhhhHHHHHHHHhhccccccc
Confidence 0111111 4556666677766666542110 0000000 123444444444444444
Q ss_pred CCccc-CCCccEEEEEecCcccchhhh--HHHHhhhhcccccccccceecccccccchHHHHH--HHhhccceecccCCC
Q 047708 284 SSDMS-FQNLTSFSITIGDLAAGFISA--AIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKN--LLLRSEILALVDVND 358 (397)
Q Consensus 284 ~~~~~-~~~L~~L~l~~~~~~~~~~~~--~~~~l~~~~~~~~~~L~~L~l~~~~~~lp~~~~~--~~~~L~~L~l~~c~~ 358 (397)
+.|.. .++|++|.+..|...++.++. ....+.. ...+..++..+.+-.....+|.-... ..+.|+.+.+..|++
T Consensus 763 l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~-~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~ 841 (889)
T KOG4658|consen 763 LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE-LILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPK 841 (889)
T ss_pred cchhhccCcccEEEEecccccccCCCHHHHhhhccc-EEecccccccceeeecCCCCceeEecccCccchhheehhcCcc
Confidence 55555 788888888888877665551 1111110 01122333333211111111100000 002344444444442
Q ss_pred hhhhhhccccCCCCCccEEEEecc-CCceEeecCC
Q 047708 359 LENIVSDLANDGFNELMFLGIFGC-NEMKCLLNSL 392 (397)
Q Consensus 359 l~~l~~~~~~~~~~~L~~L~i~~c-~~L~~i~~~~ 392 (397)
.+.+|.+..+.|.+| +.+..+|++.
T Consensus 842 ---------l~~~P~~~~~~i~~~~~~~~~~~~~~ 867 (889)
T KOG4658|consen 842 ---------LGKLPLLSTLTIVGCEEKLKEYPDGE 867 (889)
T ss_pred ---------cccCccccccceeccccceeecCCcc
Confidence 235677777888886 7777777763
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.39 E-value=2.8e-13 Score=123.77 Aligned_cols=271 Identities=18% Similarity=0.070 Sum_probs=173.4
Q ss_pred EEccCCCccc--CCCcC-CCCCccEEEccCCCCcc-----cChhhhcCCCcccEEEcCCCCCCC-------CChhhcCcc
Q 047708 98 ISLMFNDIHE--VPDEL-ECPKLQALLLQENSLLV-----IPDRFFQGMKDLKVLDMGGIRGFS-------LPSSLSFLI 162 (397)
Q Consensus 98 l~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~-------l~~~~~~l~ 162 (397)
|++..+.+.. ....+ .+..|+.+++.++.+.. ++. .+...+.++.|+++++.+.. ++..+..++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4555555542 22222 55679999999998533 222 34677889999999887653 234566788
Q ss_pred cCcEEEccCccCcCCCc-cccCCC---CCCEEEccCCCCC-----ccchhhhCC-CCCCeeecCCCCCCCC----Cchhh
Q 047708 163 NLRTLSLHDCRRFGDLP-LIGELS---LLEILDLSKSDVS-----EIPISFGRL-SHLRLLDLTDCDDLEL----IPRGV 228 (397)
Q Consensus 163 ~L~~L~l~~~~~~~~~~-~~~~l~---~L~~L~l~~~~~~-----~lp~~i~~l-~~L~~L~l~~~~~~~~----~~~~~ 228 (397)
+|++|++++|.+....+ .+..+. +|++|++++|.+. .+...+..+ ++|+.|++++|..... ++..
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~- 160 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA- 160 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-
Confidence 99999999998864433 444444 4999999999876 233456677 8999999999654422 2222
Q ss_pred hcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCC-----CCCccc-CCCccEEEEEecCc
Q 047708 229 LSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKI-----MSSDMS-FQNLTSFSITIGDL 302 (397)
Q Consensus 229 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~-~~~L~~L~l~~~~~ 302 (397)
+..+++|++|++++|.+.+.. ...+...+..+++|+.|++++|.+.. ++..+. +++|++|+++.|..
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~-------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAG-------IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHhCCCcCEEECcCCCCchHH-------HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 567788999999998876411 11233455666899999999987542 333355 78899999998765
Q ss_pred ccchhhhHHHHhhhhcccccccccceec-ccccc-----cchHHHHHHHhhccceecccCCChhhhhhc---cccCCC-C
Q 047708 303 AAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRIS-----GVHSWIKNLLLRSEILALVDVNDLENIVSD---LANDGF-N 372 (397)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~-----~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~---~~~~~~-~ 372 (397)
... .+..+...+......|+.|++ ++.++ .+...+... ++|+++++++ +.+...... -....+ +
T Consensus 234 ~~~----~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~-N~l~~~~~~~~~~~~~~~~~ 307 (319)
T cd00116 234 TDA----GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRG-NKFGEEGAQLLAESLLEPGN 307 (319)
T ss_pred chH----HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCC-CCCcHHHHHHHHHHHhhcCC
Confidence 432 123333322223578899998 55554 223333333 5789999987 445443211 022345 6
Q ss_pred CccEEEEeccC
Q 047708 373 ELMFLGIFGCN 383 (397)
Q Consensus 373 ~L~~L~i~~c~ 383 (397)
.|+.|.|.+.|
T Consensus 308 ~~~~~~~~~~~ 318 (319)
T cd00116 308 ELESLWVKDDS 318 (319)
T ss_pred chhhcccCCCC
Confidence 78888887654
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.39 E-value=3.7e-13 Score=122.89 Aligned_cols=252 Identities=20% Similarity=0.124 Sum_probs=168.6
Q ss_pred ccccCceEEccCCCccc-----CCCcC-CCCCccEEEccCCCCcccC------hhhhcCCCcccEEEcCCCCCC-CCChh
Q 047708 91 KFEDLTGISLMFNDIHE-----VPDEL-ECPKLQALLLQENSLLVIP------DRFFQGMKDLKVLDMGGIRGF-SLPSS 157 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~------~~~~~~l~~L~~L~l~~~~~~-~l~~~ 157 (397)
.+.+++.+.+.++.+.. ++... ..+.++.++++++.+...+ ...+..+++|+.|+++++.+. ..+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 44568899999888743 33333 6677999999888754211 234577899999999999884 44555
Q ss_pred hcCccc---CcEEEccCccCcCCC-----ccccCC-CCCCEEEccCCCCC-----ccchhhhCCCCCCeeecCCCCCCCC
Q 047708 158 LSFLIN---LRTLSLHDCRRFGDL-----PLIGEL-SLLEILDLSKSDVS-----EIPISFGRLSHLRLLDLTDCDDLEL 223 (397)
Q Consensus 158 ~~~l~~---L~~L~l~~~~~~~~~-----~~~~~l-~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~~ 223 (397)
+..+.+ |++|++++|.+.... ..+..+ ++|+.|++++|.++ .++..+..+.+|++|++++|.....
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 555555 999999999875321 245566 89999999999887 3455677888999999999544322
Q ss_pred ----CchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCC-CCccc------CCCc
Q 047708 224 ----IPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS------FQNL 292 (397)
Q Consensus 224 ----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~------~~~L 292 (397)
++.. +...++|++|++++|.+... ....+...+..+++|++|++++|..... ...+. .+.|
T Consensus 181 ~~~~l~~~-l~~~~~L~~L~L~~n~i~~~-------~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L 252 (319)
T cd00116 181 GIRALAEG-LKANCNLEVLDLNNNGLTDE-------GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252 (319)
T ss_pred HHHHHHHH-HHhCCCCCEEeccCCccChH-------HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCc
Confidence 2222 45667999999999987631 1113345567789999999999985531 11111 3799
Q ss_pred cEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchH-----HHHHHHhhccceeccc
Q 047708 293 TSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHS-----WIKNLLLRSEILALVD 355 (397)
Q Consensus 293 ~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~-----~~~~~~~~L~~L~l~~ 355 (397)
++|++.+|.............++. .++|+.+++ .+.++.-+. -+....+.|+++++.+
T Consensus 253 ~~L~l~~n~i~~~~~~~l~~~~~~-----~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 253 LTLSLSCNDITDDGAKDLAEVLAE-----KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred eEEEccCCCCCcHHHHHHHHHHhc-----CCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 999999887543222212234444 578999999 666664432 1111114777777765
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=2.2e-13 Score=124.92 Aligned_cols=191 Identities=24% Similarity=0.298 Sum_probs=156.0
Q ss_pred ccCceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccC
Q 047708 93 EDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHD 171 (397)
Q Consensus 93 ~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~ 171 (397)
......+++.|++..+|... .+-.|+.+.+..|.+..+|..+ +++..|.+|+++.|++..+|..++.++ |+.|.+++
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 34456778888888888777 6777888888888888888774 888899999999999988888888876 88889999
Q ss_pred ccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccC
Q 047708 172 CRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEG 251 (397)
Q Consensus 172 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 251 (397)
|++...++.++-+..|..|+.+.|.+..+|..++.+.+|+.|.+.. +.+..+|.+ +..++ |..||++.|++.
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~Lp-Li~lDfScNkis----- 224 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCSLP-LIRLDFSCNKIS----- 224 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhCCc-eeeeecccCcee-----
Confidence 9887777788888889999999999999999999999999999888 777788887 55554 888999988887
Q ss_pred CCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-C---CCccEEEEEec
Q 047708 252 EEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-F---QNLTSFSITIG 300 (397)
Q Consensus 252 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~---~~L~~L~l~~~ 300 (397)
.++..+.+|+.|++|.+.+|.+.+-|..+. . .-.++|++..|
T Consensus 225 -------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 -------YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -------ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 467788899999999999999888888866 2 23456666666
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=4.9e-13 Score=122.69 Aligned_cols=192 Identities=20% Similarity=0.232 Sum_probs=164.8
Q ss_pred eEEccCCCcccCCCcC---CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCcc
Q 047708 97 GISLMFNDIHEVPDEL---ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCR 173 (397)
Q Consensus 97 ~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 173 (397)
++.|++-.+..+|... .+..-...+++.|++..+|.. +..+..|..+.+..|.+..+|..++.+..|.+++++.|.
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence 3556666666655433 455556788899999999987 478888999999999999999999999999999999999
Q ss_pred CcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCC
Q 047708 174 RFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEE 253 (397)
Q Consensus 174 ~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 253 (397)
+...+..++.|+ |+.|-+++|+++.+|..++.+..|.+|+.+. +.+..+|.. ++.+.+|+.|.+..|...
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsq-l~~l~slr~l~vrRn~l~------- 202 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQ-LGYLTSLRDLNVRRNHLE------- 202 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHH-hhhHHHHHHHHHhhhhhh-------
Confidence 987777888877 8999999999999999999999999999998 667778877 899999999999998886
Q ss_pred ccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccc
Q 047708 254 DSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAG 305 (397)
Q Consensus 254 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~ 305 (397)
.++.++..+ .|..|++++|++..+|-.+. +++|+.|-+..|+...-
T Consensus 203 -----~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 203 -----DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred -----hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCC
Confidence 467888855 59999999999999999999 99999999999987643
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=3.6e-11 Score=97.58 Aligned_cols=128 Identities=26% Similarity=0.277 Sum_probs=39.7
Q ss_pred CCccccccCceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhc-CcccC
Q 047708 87 PSINKFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLS-FLINL 164 (397)
Q Consensus 87 ~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~-~l~~L 164 (397)
+...+..+++.|++.++.++.+.... .+.+|+.|++++|.+..+.. +..++.|++|++++|.+..+...+. .+++|
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 33334455667777777766665444 45667777777777666654 4666777777777777766654443 46677
Q ss_pred cEEEccCccCcCCC--ccccCCCCCCEEEccCCCCCccc----hhhhCCCCCCeeecC
Q 047708 165 RTLSLHDCRRFGDL--PLIGELSLLEILDLSKSDVSEIP----ISFGRLSHLRLLDLT 216 (397)
Q Consensus 165 ~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~lp----~~i~~l~~L~~L~l~ 216 (397)
++|++++|.+...- ..+..+++|+.|++.+|.+...+ ..+..+++|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 77777776664332 25556666666666666655333 244555555555543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=6e-11 Score=96.34 Aligned_cols=108 Identities=25% Similarity=0.277 Sum_probs=27.4
Q ss_pred cCCCcccEEEcCCCCCCCCChhhc-CcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhh-hCCCCCCee
Q 047708 136 QGMKDLKVLDMGGIRGFSLPSSLS-FLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISF-GRLSHLRLL 213 (397)
Q Consensus 136 ~~l~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L 213 (397)
.+...++.|+|+++.+..+. .++ .+.+|+.|++++|.+. .++.+..+++|++|++++|.++.++..+ ..+++|++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCc-cccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 34445666666666665543 244 3556666666666653 2334555666666666666666554433 245666666
Q ss_pred ecCCCCCCCCCch-hhhcCCCCCCEEEeeccccc
Q 047708 214 DLTDCDDLELIPR-GVLSRLRKLEELYMSRSFHH 246 (397)
Q Consensus 214 ~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~ 246 (397)
++++ +.+..+.. ..++.+++|+.|++.+|++.
T Consensus 94 ~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 94 YLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp E-TT-S---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ECcC-CcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6655 33332221 11445555555555555554
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=2.4e-10 Score=107.55 Aligned_cols=190 Identities=30% Similarity=0.345 Sum_probs=123.2
Q ss_pred eEEccCCCcc-cCCCcCCCCCccEEEccCCCCcccChhhhcCCC-cccEEEcCCCCCCCCChhhcCcccCcEEEccCccC
Q 047708 97 GISLMFNDIH-EVPDELECPKLQALLLQENSLLVIPDRFFQGMK-DLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRR 174 (397)
Q Consensus 97 ~l~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 174 (397)
.+....+.+. ........+.++.|.+.++.+.++++.. ..+. +|+.|+++++.+..+|..++.+++|+.|+++.|.+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 3555555542 2333335566777777777777766642 4442 77777777777777766677777777777777777
Q ss_pred cCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCc
Q 047708 175 FGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEED 254 (397)
Q Consensus 175 ~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 254 (397)
...++..+.++.|+.|+++++.+..+|..+.....|+.|.++++... ..+.. +.++.++..+.+..|.+..
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~-~~~~~~l~~l~l~~n~~~~------- 246 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSS-LSNLKNLSGLELSNNKLED------- 246 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchh-hhhcccccccccCCceeee-------
Confidence 66665655777777777777777777776666666777777773333 33332 5666677777666555532
Q ss_pred cCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCc
Q 047708 255 SSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDL 302 (397)
Q Consensus 255 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~ 302 (397)
....++.++++++|++++|.+..++. ++ ..+|+.|+++.+..
T Consensus 247 -----~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 247 -----LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred -----ccchhccccccceecccccccccccc-ccccCccCEEeccCccc
Confidence 23556666777777777777766666 55 77777777766543
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=2.4e-10 Score=107.48 Aligned_cols=182 Identities=30% Similarity=0.360 Sum_probs=131.9
Q ss_pred CCccccccCceEEccCCCcccCCCcCCCC--CccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccC
Q 047708 87 PSINKFEDLTGISLMFNDIHEVPDELECP--KLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINL 164 (397)
Q Consensus 87 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L 164 (397)
......+.++.+.+..+.+..++...... +|+.|++++|.+..++.. ...+++|+.|+++.|.+..+|...+.+.+|
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L 188 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNL 188 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhh
Confidence 33344566788888888888877777443 788888888887777533 477888888888888888887777688888
Q ss_pred cEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccc
Q 047708 165 RTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSF 244 (397)
Q Consensus 165 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 244 (397)
+.|+++++.+...++.+.....|+++.+.+|.....+..+.++.++..+.+.+ +.+..++.. ++.+++++.|++++|.
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~-~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPES-IGNLSNLETLDLSNNQ 266 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccch-hccccccceecccccc
Confidence 88888888876666666667778888888877667777777788888777666 555554444 6777788888888877
Q ss_pred ccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCC
Q 047708 245 HHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMS 284 (397)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 284 (397)
+.. +..++.+.+|+.|+++++.....+
T Consensus 267 i~~-------------i~~~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 267 ISS-------------ISSLGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccc-------------cccccccCccCEEeccCccccccc
Confidence 764 233777788888888887744443
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5.7e-11 Score=106.03 Aligned_cols=208 Identities=21% Similarity=0.186 Sum_probs=138.2
Q ss_pred cccccCceEEccCCCcccCCC--cC-CCCCccEEEccCCCCcc--cChhhhcCCCcccEEEcCCCCCCCCChh--hcCcc
Q 047708 90 NKFEDLTGISLMFNDIHEVPD--EL-ECPKLQALLLQENSLLV--IPDRFFQGMKDLKVLDMGGIRGFSLPSS--LSFLI 162 (397)
Q Consensus 90 ~~~~~l~~l~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~l~~~--~~~l~ 162 (397)
.++++|+.+.+.++.+...+. .. .|+.++.|+++.|-+.. ....+...+|+|+.|+++.|.+.....+ -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 367888888988887776553 23 78899999998887332 2234567889999999998887433222 23578
Q ss_pred cCcEEEccCccCcCCC-c-cccCCCCCCEEEccCCC-CCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEE
Q 047708 163 NLRTLSLHDCRRFGDL-P-LIGELSLLEILDLSKSD-VSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELY 239 (397)
Q Consensus 163 ~L~~L~l~~~~~~~~~-~-~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 239 (397)
+|+.|.++.|.+.+.. . ....+|+|+.|++..|. +..-......++.|+.|++++|+.+..--....+.++.|+.|.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 8899999999886432 1 45568888999998884 3222223345667888999886555432112277888888888
Q ss_pred eecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCC--ccc-CCCccEEEEEecCc
Q 047708 240 MSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSS--DMS-FQNLTSFSITIGDL 302 (397)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~-~~~L~~L~l~~~~~ 302 (397)
++.|.+...-. .+.........+++|++|.+..|++...+. .+. +++|++|.+..+..
T Consensus 278 ls~tgi~si~~-----~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 278 LSSTGIASIAE-----PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ccccCcchhcC-----CCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 88887764211 111222234567889999999888744443 344 77888887766554
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=8.1e-11 Score=105.08 Aligned_cols=179 Identities=17% Similarity=0.141 Sum_probs=103.7
Q ss_pred CCCCccEEEccCCCCcccCh-hhhcCCCcccEEEcCCCCCC---CCChhhcCcccCcEEEccCccCcCCCc--cccCCCC
Q 047708 113 ECPKLQALLLQENSLLVIPD-RFFQGMKDLKVLDMGGIRGF---SLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSL 186 (397)
Q Consensus 113 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~ 186 (397)
++++|+...+.++.....+. .....|++++.|||++|-+. .+..-+..+++|+.|+++.|.+..... .-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 56677777777666544442 33466777777777776552 223334457777777777776643332 2235667
Q ss_pred CCEEEccCCCCC--ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCcccccccc
Q 047708 187 LEILDLSKSDVS--EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIEL 264 (397)
Q Consensus 187 L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 264 (397)
|+.|.+++|+++ .+-.....+++|..|++..|+.+..-..+ ...+..|++|+|++|.+... ......
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~----------~~~~~~ 267 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDF----------DQGYKV 267 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccc----------cccccc
Confidence 777777777666 44445556677777777765332221111 33455677777777665431 223445
Q ss_pred CCCCCCCEEEEeccCCCCC--CCc-----cc-CCCccEEEEEecCc
Q 047708 265 GSLSRLTSLHIHIPNGKIM--SSD-----MS-FQNLTSFSITIGDL 302 (397)
Q Consensus 265 ~~l~~L~~L~l~~~~~~~~--~~~-----~~-~~~L~~L~l~~~~~ 302 (397)
+.++.|+.|.++.+.+.++ |+. .. +++|+.|++..|+.
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 5667777777776663332 222 12 67777777777665
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=1.6e-10 Score=98.55 Aligned_cols=131 Identities=20% Similarity=0.180 Sum_probs=87.6
Q ss_pred CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEc
Q 047708 113 ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDL 192 (397)
Q Consensus 113 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 192 (397)
.+..|+++++++|.+..+..+. .-.|.++.|++++|.+..+.. +..+++|+.|++++|.+.+...+-.++-+.++|.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 4566777777777766666653 666777777777777755544 66677777777777776555555556677777777
Q ss_pred cCCCCCccchhhhCCCCCCeeecCCCCCCCCCch-hhhcCCCCCCEEEeecccccc
Q 047708 193 SKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPR-GVLSRLRKLEELYMSRSFHHW 247 (397)
Q Consensus 193 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~ 247 (397)
.+|.+..+ .+++++-+|..|++.+ +++..+.. ..+|++|.|+++.+.+|.+.+
T Consensus 360 a~N~iE~L-SGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIETL-SGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhhh-hhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 77766666 3667777777777777 44444322 126777777777777777654
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=2e-10 Score=97.89 Aligned_cols=194 Identities=19% Similarity=0.158 Sum_probs=111.0
Q ss_pred cccccCceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCC----CCCChhhcCcccC
Q 047708 90 NKFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG----FSLPSSLSFLINL 164 (397)
Q Consensus 90 ~~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----~~l~~~~~~l~~L 164 (397)
..+++++.+.++.++-..+-... .-+.|+++.+.+..+...+.- -.+..+ -|..+..- +.+-..+-....|
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l--~pe~~~--~D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSL--LPETIL--ADPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccc--cchhhh--cCccCCCCCccCCceEEecchHhhh
Confidence 34667888888877655554444 557788887766543332210 111111 11111111 1111223334566
Q ss_pred cEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccc
Q 047708 165 RTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSF 244 (397)
Q Consensus 165 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 244 (397)
.++++++|.+.....++.-+|.++.|+++.|.+..+.. +..+.+|++|++++ +.++.+... -.++.++++|.+++|.
T Consensus 287 telDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gw-h~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 287 TELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVGW-HLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhhh-HhhhcCEeeeehhhhh
Confidence 67777777665555566666777777777777666543 66677777777777 444444432 3456667777777766
Q ss_pred ccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCC--ccc-CCCccEEEEEecCcc
Q 047708 245 HHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSS--DMS-FQNLTSFSITIGDLA 303 (397)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~-~~~L~~L~l~~~~~~ 303 (397)
+.. ...++++=+|..|++++|++..+-. .++ +|-|+++.+.+|+..
T Consensus 364 iE~-------------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 364 IET-------------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred Hhh-------------hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 532 4556666667777777776544432 255 677777777766643
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.74 E-value=8.2e-09 Score=89.99 Aligned_cols=232 Identities=16% Similarity=0.099 Sum_probs=143.9
Q ss_pred CCCCccEEEccCCCCccc----ChhhhcCCCcccEEEcCCCCC----CCCChh-------hcCcccCcEEEccCccCcCC
Q 047708 113 ECPKLQALLLQENSLLVI----PDRFFQGMKDLKVLDMGGIRG----FSLPSS-------LSFLINLRTLSLHDCRRFGD 177 (397)
Q Consensus 113 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~----~~l~~~-------~~~l~~L~~L~l~~~~~~~~ 177 (397)
.+..++.+++++|.++.- ....+.+.+.|+..+++...- .++|.. +...++|+++++|+|.+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 455667777777764431 122345566777777776432 233332 33445788888888876433
Q ss_pred C-c----cccCCCCCCEEEccCCCCCccc--------------hhhhCCCCCCeeecCCCCCCCCCch----hhhcCCCC
Q 047708 178 L-P----LIGELSLLEILDLSKSDVSEIP--------------ISFGRLSHLRLLDLTDCDDLELIPR----GVLSRLRK 234 (397)
Q Consensus 178 ~-~----~~~~l~~L~~L~l~~~~~~~lp--------------~~i~~l~~L~~L~l~~~~~~~~~~~----~~~~~l~~ 234 (397)
- + -+..+..|++|++.+|.+.... .-+++-++|+++..++ +.+..-+. ..+...+.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAFQSHPT 186 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHHHhccc
Confidence 2 1 3566788888888888775221 2345567888888888 55554443 23567788
Q ss_pred CCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCC-----CCCccc-CCCccEEEEEecCcccchhh
Q 047708 235 LEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKI-----MSSDMS-FQNLTSFSITIGDLAAGFIS 308 (397)
Q Consensus 235 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~-~~~L~~L~l~~~~~~~~~~~ 308 (397)
|+++.+..|.+... ........+..+++|+.|++..|.++. +...+. +++|+.|++++|-....-..
T Consensus 187 leevr~~qN~I~~e-------G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPE-------GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI 259 (382)
T ss_pred cceEEEecccccCc-------hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence 99999988877531 112345667788999999999887322 233355 78899999998876543222
Q ss_pred hHHHHhhhhcccccccccceec-ccccc-----cchHHHHHHHhhccceecccCC
Q 047708 309 AAIEVFSRKFKKRCSRAMGLSQ-DMRIS-----GVHSWIKNLLLRSEILALVDVN 357 (397)
Q Consensus 309 ~~~~~l~~~~~~~~~~L~~L~l-~~~~~-----~lp~~~~~~~~~L~~L~l~~c~ 357 (397)
+....+.. ..++|+.+.+ .+.++ .+-..+... +.|+.|.|++|.
T Consensus 260 a~~~al~~----~~p~L~vl~l~gNeIt~da~~~la~~~~ek-~dL~kLnLngN~ 309 (382)
T KOG1909|consen 260 AFVDALKE----SAPSLEVLELAGNEITRDAALALAACMAEK-PDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHhc----cCCCCceeccCcchhHHHHHHHHHHHHhcc-hhhHHhcCCccc
Confidence 23334444 4778888887 55544 122333333 578888888754
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.66 E-value=1.4e-09 Score=96.85 Aligned_cols=276 Identities=16% Similarity=0.092 Sum_probs=168.1
Q ss_pred cCceEEccCCCcccCC---CcC-CCCCccEEEccCCC-Cccc-ChhhhcCCCcccEEEcCCCCC-CC--CChhhcCcccC
Q 047708 94 DLTGISLMFNDIHEVP---DEL-ECPKLQALLLQENS-LLVI-PDRFFQGMKDLKVLDMGGIRG-FS--LPSSLSFLINL 164 (397)
Q Consensus 94 ~l~~l~l~~~~~~~~~---~~~-~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~-~~--l~~~~~~l~~L 164 (397)
.++.|++.++.-.... ... ++++++.|.+.+|. +++. -.++-..++.|++|++..|.. .. +..-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4677777777433322 222 78888888888887 3332 233446788899999988654 22 22234458889
Q ss_pred cEEEccCccCcCCC---ccccCCCCCCEEEccCCC-CC--ccchhhhCCCCCCeeecCCCCCCCCCchhhhc-CCCCCCE
Q 047708 165 RTLSLHDCRRFGDL---PLIGELSLLEILDLSKSD-VS--EIPISFGRLSHLRLLDLTDCDDLELIPRGVLS-RLRKLEE 237 (397)
Q Consensus 165 ~~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~~~-~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~ 237 (397)
++|++++|.-...- +-...+..++.+...+|. .. .+-..-+.+.-+..+++..|+.++......+. .+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 99999998653331 234455556777666652 11 22222233344556666677777765543233 4677888
Q ss_pred EEeecccccccccCCCccCccccccccCCCCCCCEEEEeccC-CCCCCC-ccc--CCCccEEEEEecCcccchhhhHHHH
Q 047708 238 LYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPN-GKIMSS-DMS--FQNLTSFSITIGDLAAGFISAAIEV 313 (397)
Q Consensus 238 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~-~~~--~~~L~~L~l~~~~~~~~~~~~~~~~ 313 (397)
|..++|...+.. .+..--.+..+|+.|.+..++ +...-. .++ +++|+.+++..+..... ..+.+
T Consensus 299 l~~s~~t~~~d~---------~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d---~tL~s 366 (483)
T KOG4341|consen 299 LCYSSCTDITDE---------VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD---GTLAS 366 (483)
T ss_pred hcccCCCCCchH---------HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh---hhHhh
Confidence 888877664321 222333457888899888887 332221 234 78899888887765433 22455
Q ss_pred hhhhcccccccccceecc--cccccc-----hHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCce
Q 047708 314 FSRKFKKRCSRAMGLSQD--MRISGV-----HSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMK 386 (397)
Q Consensus 314 l~~~~~~~~~~L~~L~l~--~~~~~l-----p~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~ 386 (397)
++. .++.|+++++. ..++.. ....... ..|+.+.+.+|+.+.+-..+ ....+++||.+++.+|....
T Consensus 367 ls~----~C~~lr~lslshce~itD~gi~~l~~~~c~~-~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 367 LSR----NCPRLRVLSLSHCELITDEGIRHLSSSSCSL-EGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hcc----CCchhccCChhhhhhhhhhhhhhhhhccccc-cccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhh
Confidence 555 68888888883 233221 2222222 57888999999988776422 24577889999998887655
Q ss_pred E
Q 047708 387 C 387 (397)
Q Consensus 387 ~ 387 (397)
+
T Consensus 441 k 441 (483)
T KOG4341|consen 441 K 441 (483)
T ss_pred h
Confidence 4
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.7e-09 Score=90.96 Aligned_cols=60 Identities=20% Similarity=0.289 Sum_probs=30.5
Q ss_pred ccccccceecccccccchHH---HHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEecc
Q 047708 321 RCSRAMGLSQDMRISGVHSW---IKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGC 382 (397)
Q Consensus 321 ~~~~L~~L~l~~~~~~lp~~---~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c 382 (397)
.|+++..|++..+..--|.. +.++ +.|++|.++.|..+.--- -......|+|.+|++.||
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf-~~L~~lSlsRCY~i~p~~-~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKF-NYLQHLSLSRCYDIIPET-LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhc-chheeeehhhhcCCChHH-eeeeccCcceEEEEeccc
Confidence 45566666652222211222 2222 567777777776553221 123456677777777665
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.62 E-value=1.6e-07 Score=93.01 Aligned_cols=105 Identities=26% Similarity=0.318 Sum_probs=85.1
Q ss_pred cCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCC-ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEe
Q 047708 163 NLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS-EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYM 240 (397)
Q Consensus 163 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 240 (397)
.++.|+++++.+.+.+| .++.+++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47788999988877666 8889999999999999887 78888999999999999996666677776 889999999999
Q ss_pred ecccccccccCCCccCccccccccCC-CCCCCEEEEeccC
Q 047708 241 SRSFHHWQFEGEEDSSSNAKFIELGS-LSRLTSLHIHIPN 279 (397)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~ 279 (397)
++|.+.+.+| ..++. ..++..+++.+|.
T Consensus 498 s~N~l~g~iP-----------~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVP-----------AALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCC-----------hHHhhccccCceEEecCCc
Confidence 9999888543 44443 3466788888876
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.60 E-value=4.1e-08 Score=65.47 Aligned_cols=59 Identities=36% Similarity=0.506 Sum_probs=36.2
Q ss_pred CCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccCcc
Q 047708 115 PKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHDCR 173 (397)
Q Consensus 115 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~ 173 (397)
++|+.|++++|.+..++...|.++++|++|++++|.+..++ ..+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34566666666666666666666666666666666665543 355666666666666654
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.58 E-value=2.5e-07 Score=91.59 Aligned_cols=107 Identities=25% Similarity=0.364 Sum_probs=92.7
Q ss_pred cccEEEcCCCCC-CCCChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCC-ccchhhhCCCCCCeeecC
Q 047708 140 DLKVLDMGGIRG-FSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS-EIPISFGRLSHLRLLDLT 216 (397)
Q Consensus 140 ~L~~L~l~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~ 216 (397)
.++.|+|+++.+ ..+|..++.+++|+.|++++|.+.+.+| .++.+++|+.|++++|.+. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 478899999988 6789999999999999999999987776 8999999999999999998 789999999999999999
Q ss_pred CCCCCCCCchhhhcC-CCCCCEEEeecccccc
Q 047708 217 DCDDLELIPRGVLSR-LRKLEELYMSRSFHHW 247 (397)
Q Consensus 217 ~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~ 247 (397)
+|...+.+|.. ++. ..++..+++.+|....
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCcccc
Confidence 97777788887 544 4577888888886543
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.7e-09 Score=90.18 Aligned_cols=174 Identities=20% Similarity=0.206 Sum_probs=86.6
Q ss_pred CccEEEccCCCCc-ccChhhhcCCCcccEEEcCCCCC-CCCChhhcCcccCcEEEccCccCcCCCc---cccCCCCCCEE
Q 047708 116 KLQALLLQENSLL-VIPDRFFQGMKDLKVLDMGGIRG-FSLPSSLSFLINLRTLSLHDCRRFGDLP---LIGELSLLEIL 190 (397)
Q Consensus 116 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L 190 (397)
.|+.|+++...++ .--..++..|..|+.|.+.+..+ ..+...+.+-.+|+.|+++.|+-...-. -+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4566666555422 11222345566666666666665 3344455556666666666654322211 34556666666
Q ss_pred EccCCCCC--ccchhhhC-CCCCCeeecCCCCCC---CCCchhhhcCCCCCCEEEeecccccccccCCCccCcccccccc
Q 047708 191 DLSKSDVS--EIPISFGR-LSHLRLLDLTDCDDL---ELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIEL 264 (397)
Q Consensus 191 ~l~~~~~~--~lp~~i~~-l~~L~~L~l~~~~~~---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 264 (397)
+++.|.+. .+...+.. -.+|..|++++|... ..+. ....++++|.+|+++.|..... ..+.++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~----------~~~~~~ 334 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKN----------DCFQEF 334 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCc----------hHHHHH
Confidence 66666433 12112221 135555666654221 1111 1234566666666666554331 334455
Q ss_pred CCCCCCCEEEEeccCCCCCCC---ccc-CCCccEEEEEecC
Q 047708 265 GSLSRLTSLHIHIPNGKIMSS---DMS-FQNLTSFSITIGD 301 (397)
Q Consensus 265 ~~l~~L~~L~l~~~~~~~~~~---~~~-~~~L~~L~l~~~~ 301 (397)
-+++.|++|.++.|..- .|. .+. .|+|.+|++.+|-
T Consensus 335 ~kf~~L~~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDI-IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhcchheeeehhhhcCC-ChHHeeeeccCcceEEEEecccc
Confidence 56666666666665421 111 133 5667777766553
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.47 E-value=1.4e-07 Score=62.87 Aligned_cols=59 Identities=29% Similarity=0.491 Sum_probs=53.7
Q ss_pred ccCceEEccCCCcccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCC
Q 047708 93 EDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG 151 (397)
Q Consensus 93 ~~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 151 (397)
++++.|++.+|++..++... .+++|+.|++++|.+..+++..|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46899999999999988655 899999999999999999998899999999999999864
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.41 E-value=2.9e-08 Score=93.70 Aligned_cols=175 Identities=26% Similarity=0.276 Sum_probs=88.3
Q ss_pred cccccCceEEccCCCcccCCC-cCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEE
Q 047708 90 NKFEDLTGISLMFNDIHEVPD-ELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLS 168 (397)
Q Consensus 90 ~~~~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~ 168 (397)
..++++..+++..|.+..+.. ...+++|+.|++++|.+..+.. +..++.|+.|++++|.+..+.. +..+.+|+.++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~ 168 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLKLLD 168 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccC-Cccchhhhccc
Confidence 345556666666666666555 3356666666666666555544 3455556666666666544432 33455666666
Q ss_pred ccCccCcCCCcc-ccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCC--CCEEEeecccc
Q 047708 169 LHDCRRFGDLPL-IGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRK--LEELYMSRSFH 245 (397)
Q Consensus 169 l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~--L~~L~l~~~~~ 245 (397)
+++|.+....+. ...+.+++.+.+.++.+..+. .+..+..+..+++.. +.+..+-. +..+.. |+++++.++.+
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~-n~i~~~~~--l~~~~~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLD-NKISKLEG--LNELVMLHLRELYLSGNRI 244 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccc-ccceeccC--cccchhHHHHHHhcccCcc
Confidence 666555333222 355555666666555544332 222222233333333 22222221 122222 66666666665
Q ss_pred cccccCCCccCccccccccCCCCCCCEEEEeccCCCCC
Q 047708 246 HWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM 283 (397)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 283 (397)
.. ....+..+..+..|++..++....
T Consensus 245 ~~------------~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 245 SR------------SPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred cc------------ccccccccccccccchhhcccccc
Confidence 43 114455566677777776664433
No 44
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.41 E-value=1.2e-08 Score=91.02 Aligned_cols=256 Identities=18% Similarity=0.151 Sum_probs=163.8
Q ss_pred CCccEEEccCCC-CcccC-hhhhcCCCcccEEEcCCCCC-C-CCChhhc-CcccCcEEEccCccCcCCC--c-cccCCCC
Q 047708 115 PKLQALLLQENS-LLVIP-DRFFQGMKDLKVLDMGGIRG-F-SLPSSLS-FLINLRTLSLHDCRRFGDL--P-LIGELSL 186 (397)
Q Consensus 115 ~~L~~L~l~~~~-~~~~~-~~~~~~l~~L~~L~l~~~~~-~-~l~~~~~-~l~~L~~L~l~~~~~~~~~--~-~~~~l~~ 186 (397)
..|+.|.+.|+. ..+-+ ..+...++++..|.+.++.. . ..-.++. .+..|+++++..|...... . -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 468888888887 33322 23446789999998888864 1 1112233 3678888888886543332 2 3446788
Q ss_pred CCEEEccCC-CCC--ccchhhhCCCCCCeeecCCCCCCCCCchh-hhcCCCCCCEEEeecccccccccCCCccCcccccc
Q 047708 187 LEILDLSKS-DVS--EIPISFGRLSHLRLLDLTDCDDLELIPRG-VLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFI 262 (397)
Q Consensus 187 L~~L~l~~~-~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 262 (397)
|+++++++| .++ .+..-...+..++.+...+|...+.-... .-+.+..+.++++..|.... +...+.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT---------D~~~~~ 288 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT---------DEDLWL 288 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc---------chHHHH
Confidence 899998888 344 34334455666777766666554321111 11345556667766665443 334555
Q ss_pred ccCCCCCCCEEEEeccC-CCCCCCc-cc--CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceecccccccch
Q 047708 263 ELGSLSRLTSLHIHIPN-GKIMSSD-MS--FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVH 338 (397)
Q Consensus 263 ~l~~l~~L~~L~l~~~~-~~~~~~~-~~--~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~lp 338 (397)
.-..+..|+.|+.+++. .+..+-+ ++ +.+|+.|-++.|..... .++..+.. .++.|+.+++......+.
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd---~~ft~l~r----n~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD---RGFTMLGR----NCPHLERLDLEECGLITD 361 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh---hhhhhhhc----CChhhhhhcccccceehh
Confidence 55678899999998887 3333323 44 89999999999987644 33455655 688999999933333233
Q ss_pred HHHHHHH---hhccceecccCCChhhhhhc-c--ccCCCCCccEEEEeccCCce
Q 047708 339 SWIKNLL---LRSEILALVDVNDLENIVSD-L--ANDGFNELMFLGIFGCNEMK 386 (397)
Q Consensus 339 ~~~~~~~---~~L~~L~l~~c~~l~~l~~~-~--~~~~~~~L~~L~i~~c~~L~ 386 (397)
..+-++. +.|+.|.|++|..+++.... + ...+...|+.+++.+||.+.
T Consensus 362 ~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 362 GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 3344433 68999999999988877321 1 23567889999999988764
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.38 E-value=8.3e-08 Score=83.84 Aligned_cols=40 Identities=18% Similarity=0.050 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhcceeeecCCcCeEEechHHHHHHHHHhc
Q 047708 32 GRARSAVSTLIFSYLLIDGGKEGYVKMHDVVRYVAQQIAS 71 (397)
Q Consensus 32 ~~~~~~~~~L~~~~l~~~~~~~~~~~~hd~~~~~~~~~~~ 71 (397)
+..+.++..+....=+...+-++.+.=-...+.++..+++
T Consensus 17 ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~ 56 (382)
T KOG1909|consen 17 EDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLAS 56 (382)
T ss_pred hhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhh
Confidence 3355566666554444433333333334455555555555
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=2.2e-09 Score=101.77 Aligned_cols=131 Identities=23% Similarity=0.170 Sum_probs=92.8
Q ss_pred cccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCC
Q 047708 140 DLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCD 219 (397)
Q Consensus 140 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~ 219 (397)
.|.+.+.++|.+..+..++.-++.|+.|++++|.+.... .+..+++|++||++.|.++.+|.--..-.+|..|.+++ |
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-N 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc-c
Confidence 366667777777666677777888888888888875544 77788888888888888887775333333488888887 5
Q ss_pred CCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCC
Q 047708 220 DLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMS 284 (397)
Q Consensus 220 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 284 (397)
.++.+-. +.++.+|+.|++++|.+.+. .-+..+..+..|+.|.+.+|.+..-|
T Consensus 243 ~l~tL~g--ie~LksL~~LDlsyNll~~h----------seL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 243 ALTTLRG--IENLKSLYGLDLSYNLLSEH----------SELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred HHHhhhh--HHhhhhhhccchhHhhhhcc----------hhhhHHHHHHHHHHHhhcCCccccCH
Confidence 6666554 77888888888888877653 22344555677788888887654444
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.25 E-value=1.7e-07 Score=88.64 Aligned_cols=192 Identities=24% Similarity=0.254 Sum_probs=124.8
Q ss_pred ccccCceEEccCCCcccCCC-cCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEc
Q 047708 91 KFEDLTGISLMFNDIHEVPD-ELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSL 169 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l 169 (397)
.+..+..+++..+.+..+-. ...+.+|+.|++.+|.+..+... ...+++|++|++++|.+..+.. +..+..|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc-hhhccchhhhee
Confidence 44555666677776666333 33678888888888887666543 3678888888888888876643 666777888888
Q ss_pred cCccCcCCCccccCCCCCCEEEccCCCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccc
Q 047708 170 HDCRRFGDLPLIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQ 248 (397)
Q Consensus 170 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 248 (397)
.+|.+ ..++.+..+..|+.++++.|.+..+... ...+.+++.+.+.+ +.+..+.. +..+..+..+++..|.+..
T Consensus 148 ~~N~i-~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~--~~~~~~l~~~~l~~n~i~~- 222 (414)
T KOG0531|consen 148 SGNLI-SDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG-NSIREIEG--LDLLKKLVLLSLLDNKISK- 222 (414)
T ss_pred ccCcc-hhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC-Cchhcccc--hHHHHHHHHhhccccccee-
Confidence 88877 4445555688888888888887766553 46777888888877 44444432 3334444444555555543
Q ss_pred ccCCCccCccccccccCCCCC--CCEEEEeccCCCCCCCccc-CCCccEEEEEecC
Q 047708 249 FEGEEDSSSNAKFIELGSLSR--LTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGD 301 (397)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~ 301 (397)
...+..+.. |+.+++.++.....+..+. +..+..|++..+.
T Consensus 223 ------------~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 223 ------------LEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred ------------ccCcccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 222333333 7888888888766644444 6666666666443
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=2.2e-07 Score=70.39 Aligned_cols=109 Identities=20% Similarity=0.270 Sum_probs=82.1
Q ss_pred CceEEccCCCcccCCCcC----CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEcc
Q 047708 95 LTGISLMFNDIHEVPDEL----ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLH 170 (397)
Q Consensus 95 l~~l~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 170 (397)
+..++++.|.+-.++... ....|...++++|.+.++|..+-..++.+..|++++|.+.++|.++..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 345566666554433322 5567777888888888888887777888888888888888888888888888888888
Q ss_pred CccCcCCCccccCCCCCCEEEccCCCCCccchh
Q 047708 171 DCRRFGDLPLIGELSLLEILDLSKSDVSEIPIS 203 (397)
Q Consensus 171 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~ 203 (397)
.|.+...+..+..|.+|-.|+..++....+|.+
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 888877776777788888888877777777654
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.04 E-value=8.6e-08 Score=91.33 Aligned_cols=154 Identities=20% Similarity=0.137 Sum_probs=106.0
Q ss_pred CCccccccCceEEccCCCcccCCCcC---------------------------------CCCCccEEEccCCCCcccChh
Q 047708 87 PSINKFEDLTGISLMFNDIHEVPDEL---------------------------------ECPKLQALLLQENSLLVIPDR 133 (397)
Q Consensus 87 ~~~~~~~~l~~l~l~~~~~~~~~~~~---------------------------------~~~~L~~L~l~~~~~~~~~~~ 133 (397)
-++..++.||+|-+.++++..+.... .+.+|.+.++++|.+..+..+
T Consensus 103 i~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~S 182 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDES 182 (1096)
T ss_pred ceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHH
Confidence 34456788899888888765422111 122344444555554444444
Q ss_pred hhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccchhhhCCCCCCe
Q 047708 134 FFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPISFGRLSHLRL 212 (397)
Q Consensus 134 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 212 (397)
+.-++.|+.|+|++|++..+. .+..+++|++||+++|.+...+. ....+. |+.|.+++|.++++ .++.++.+|+.
T Consensus 183 -Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~ 258 (1096)
T KOG1859|consen 183 -LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYG 258 (1096)
T ss_pred -HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhhc
Confidence 366788999999999987665 68889999999999998755543 333444 99999999988877 57889999999
Q ss_pred eecCCCCCCCCCc-hhhhcCCCCCCEEEeecccc
Q 047708 213 LDLTDCDDLELIP-RGVLSRLRKLEELYMSRSFH 245 (397)
Q Consensus 213 L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~ 245 (397)
|+++.| .+.... ...+..+..|+.|++.+|.+
T Consensus 259 LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 259 LDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 999984 333211 11256677788888888764
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.04 E-value=2.8e-06 Score=84.19 Aligned_cols=132 Identities=20% Similarity=0.170 Sum_probs=66.6
Q ss_pred CCccEEEccCCC-C-cccChhhhcCCCcccEEEcCCCCC--CCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEE
Q 047708 115 PKLQALLLQENS-L-LVIPDRFFQGMKDLKVLDMGGIRG--FSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEIL 190 (397)
Q Consensus 115 ~~L~~L~l~~~~-~-~~~~~~~~~~l~~L~~L~l~~~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 190 (397)
.+|+.|+++|.. + ..=+..+...+|+|+.|.+.+-.+ .++-.-..++++|+.||++++++ ..+.++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCcHHHhccccHHHH
Confidence 455666665544 2 122223334466666666666554 22233344566666666666665 223566666666666
Q ss_pred EccCCCCCccc--hhhhCCCCCCeeecCCCCCCCCC--chhh---hcCCCCCCEEEeecccccc
Q 047708 191 DLSKSDVSEIP--ISFGRLSHLRLLDLTDCDDLELI--PRGV---LSRLRKLEELYMSRSFHHW 247 (397)
Q Consensus 191 ~l~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~--~~~~---~~~l~~L~~L~l~~~~~~~ 247 (397)
.+.+-.+..-. ..+.++++|++||++.......- .... -..+|+|+.||.++..+..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 66554444222 35556666666666652222111 1100 1236666777666655544
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=1.8e-06 Score=74.04 Aligned_cols=103 Identities=19% Similarity=0.105 Sum_probs=63.9
Q ss_pred ceEEccCCCcccCCCcC----CCCCccEEEccCCCCccc--ChhhhcCCCcccEEEcCCCCCCCCChhh-cCcccCcEEE
Q 047708 96 TGISLMFNDIHEVPDEL----ECPKLQALLLQENSLLVI--PDRFFQGMKDLKVLDMGGIRGFSLPSSL-SFLINLRTLS 168 (397)
Q Consensus 96 ~~l~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~l~~~~-~~l~~L~~L~ 168 (397)
..+.+.++.+....... .++.++.+++.+|.+.+- ...+..++|.|++|+++.|++...-+.. ....+|+.|.
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV 127 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEE
Confidence 34555555555432221 567778888888874332 2345677888888888888774332323 3566788888
Q ss_pred ccCccCcCCC--ccccCCCCCCEEEccCCCCC
Q 047708 169 LHDCRRFGDL--PLIGELSLLEILDLSKSDVS 198 (397)
Q Consensus 169 l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~ 198 (397)
+.++.+.+.- ..+..+|.++.|.++.|++.
T Consensus 128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred EcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 8887765433 25667777777777776443
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.97 E-value=4.9e-06 Score=82.51 Aligned_cols=56 Identities=27% Similarity=0.407 Sum_probs=25.1
Q ss_pred cccCcEEEccCccCcCCC--ccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCC
Q 047708 161 LINLRTLSLHDCRRFGDL--PLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTD 217 (397)
Q Consensus 161 l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 217 (397)
+++|+.|.+++-.+...- .-..++++|..||+++++++.+ .+++++++|+.|.+.+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC
Confidence 445555555443331110 1233445555555555554444 4445555555554444
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.97 E-value=1.4e-05 Score=64.96 Aligned_cols=80 Identities=24% Similarity=0.232 Sum_probs=35.0
Q ss_pred CceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC--hhhcCcccCcEEEccCc
Q 047708 95 LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP--SSLSFLINLRTLSLHDC 172 (397)
Q Consensus 95 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~ 172 (397)
...+++..|++..++....++.|.+|.+.+|++..+.+.+-.-+++|..|.+.+|++..+. ..+..++.|++|.+-+|
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 3344444444444444334444555555555544444444333444444555444442221 11333344444444444
Q ss_pred cC
Q 047708 173 RR 174 (397)
Q Consensus 173 ~~ 174 (397)
..
T Consensus 124 pv 125 (233)
T KOG1644|consen 124 PV 125 (233)
T ss_pred ch
Confidence 43
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.90 E-value=2.6e-05 Score=63.44 Aligned_cols=120 Identities=22% Similarity=0.179 Sum_probs=92.1
Q ss_pred ceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcC-cccCcEEEccCcc
Q 047708 96 TGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSF-LINLRTLSLHDCR 173 (397)
Q Consensus 96 ~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~-l~~L~~L~l~~~~ 173 (397)
+.+++.+..+..+.... -......+++++|.+..++. |..++.|.+|.++.|.+..+.+.+.. +++|..|.+.+|+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 44555555444333322 34567788999999777765 78999999999999999888666666 6789999999999
Q ss_pred CcCCC--ccccCCCCCCEEEccCCCCCccc----hhhhCCCCCCeeecCC
Q 047708 174 RFGDL--PLIGELSLLEILDLSKSDVSEIP----ISFGRLSHLRLLDLTD 217 (397)
Q Consensus 174 ~~~~~--~~~~~l~~L~~L~l~~~~~~~lp----~~i~~l~~L~~L~l~~ 217 (397)
+.... ..+..+++|+.|.+-+|.++.-+ -.+..+++|+.|+..+
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 86543 47888999999999999887544 3678899999999877
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=6.1e-05 Score=69.21 Aligned_cols=73 Identities=19% Similarity=0.341 Sum_probs=41.5
Q ss_pred CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCC-CCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEE
Q 047708 113 ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG-FSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILD 191 (397)
Q Consensus 113 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 191 (397)
.+.+++.|++++|.+..+|. -..+|+.|.+++|.. ..+|..+ ..+|++|++++|.....+| .+|+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceEE
Confidence 35677777777777666661 223577777776543 5555433 2467777777763222222 2355666
Q ss_pred ccCCC
Q 047708 192 LSKSD 196 (397)
Q Consensus 192 l~~~~ 196 (397)
+..+.
T Consensus 119 L~~n~ 123 (426)
T PRK15386 119 IKGSA 123 (426)
T ss_pred eCCCC
Confidence 65543
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=2.6e-05 Score=47.67 Aligned_cols=32 Identities=34% Similarity=0.625 Sum_probs=14.9
Q ss_pred CCCEEEccCCCCCccchhhhCCCCCCeeecCC
Q 047708 186 LLEILDLSKSDVSEIPISFGRLSHLRLLDLTD 217 (397)
Q Consensus 186 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 217 (397)
+|++|++++|.++.+|..++++++|+.|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence 34455555555555544445555555555544
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=2.2e-05 Score=47.93 Aligned_cols=35 Identities=37% Similarity=0.415 Sum_probs=17.5
Q ss_pred cccEEEcCCCCCCCCChhhcCcccCcEEEccCccC
Q 047708 140 DLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRR 174 (397)
Q Consensus 140 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 174 (397)
+|++|++++|.+..+|..++++++|++|++++|.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 45555555555555554455555555555555544
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=8.5e-05 Score=68.25 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=37.4
Q ss_pred cccCceEEccCCCcccCCCcCCCCCccEEEccCCC-CcccChhhhcCCCcccEEEcCCC-CCCCCCh
Q 047708 92 FEDLTGISLMFNDIHEVPDELECPKLQALLLQENS-LLVIPDRFFQGMKDLKVLDMGGI-RGFSLPS 156 (397)
Q Consensus 92 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~-~~~~l~~ 156 (397)
+.+++.|+++.|.+..+|. -.+.|+.|.+.+|. +..+|..+ .++|++|++++| .+..+|.
T Consensus 51 ~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred hcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc
Confidence 4556777777777776662 12357777777766 55555432 246777777776 4455554
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.75 E-value=5.3e-06 Score=63.07 Aligned_cols=111 Identities=18% Similarity=0.192 Sum_probs=82.8
Q ss_pred CccEEEccCCCCcccChhh--hcCCCcccEEEcCCCCCCCCChhhcC-cccCcEEEccCccCcCCCccccCCCCCCEEEc
Q 047708 116 KLQALLLQENSLLVIPDRF--FQGMKDLKVLDMGGIRGFSLPSSLSF-LINLRTLSLHDCRRFGDLPLIGELSLLEILDL 192 (397)
Q Consensus 116 ~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 192 (397)
.+..++++.|.+..+++.. .....+|...++++|.+..+|+.+.. ++.+..+++.+|.+...|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 4556677777755444332 35566788888888888888887765 45788888888888777768888888888888
Q ss_pred cCCCCCccchhhhCCCCCCeeecCCCCCCCCCchh
Q 047708 193 SKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRG 227 (397)
Q Consensus 193 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 227 (397)
+.|.+...|..+..+.+|..|+..+ +....+|-.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPE-NARAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCC-CccccCcHH
Confidence 8888888888888888888888777 555566654
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=9.6e-06 Score=69.77 Aligned_cols=179 Identities=18% Similarity=0.172 Sum_probs=108.7
Q ss_pred ccEEEccCCCCcccC--hhhhcCCCcccEEEcCCCCC---CCCChhhcCcccCcEEEccCccCcCCCccc-cCCCCCCEE
Q 047708 117 LQALLLQENSLLVIP--DRFFQGMKDLKVLDMGGIRG---FSLPSSLSFLINLRTLSLHDCRRFGDLPLI-GELSLLEIL 190 (397)
Q Consensus 117 L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L 190 (397)
++.|.+.++.+.... ..+...+..++.+||.+|.+ .++..-+.++++|++|+++.|.+...+... ..+.+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 335555666543332 23345678899999999988 344455677999999999999987766655 578899999
Q ss_pred EccCCCCC--ccchhhhCCCCCCeeecCCCCC---------CCCCchh-------------------hhcCCCCCCEEEe
Q 047708 191 DLSKSDVS--EIPISFGRLSHLRLLDLTDCDD---------LELIPRG-------------------VLSRLRKLEELYM 240 (397)
Q Consensus 191 ~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~---------~~~~~~~-------------------~~~~l~~L~~L~l 240 (397)
-+.++.+. .....+..++.++.|+++.|+. .+.+... .-...+++..+.+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 99998665 5556667777777777776311 1111111 0112344555555
Q ss_pred ecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCC--Cccc-CCCccEEEEEecCcccc
Q 047708 241 SRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMS--SDMS-FQNLTSFSITIGDLAAG 305 (397)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~-~~~L~~L~l~~~~~~~~ 305 (397)
..|.+... ..-+....++.+.-|.+..+++++.. +.+. ++.|..|.+..++.++.
T Consensus 207 ~e~PlK~~----------s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 207 CEGPLKTE----------SSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred ecCcccch----------hhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 55543321 11122233455556666666644333 2355 78888888877776543
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.59 E-value=8.6e-05 Score=63.25 Aligned_cols=188 Identities=16% Similarity=0.120 Sum_probs=88.4
Q ss_pred hcCcccCcEEEccCccCcCCCc-----cccCCCCCCEEEccCCCCCccc--------------hhhhCCCCCCeeecCCC
Q 047708 158 LSFLINLRTLSLHDCRRFGDLP-----LIGELSLLEILDLSKSDVSEIP--------------ISFGRLSHLRLLDLTDC 218 (397)
Q Consensus 158 ~~~l~~L~~L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~~~~~~lp--------------~~i~~l~~L~~L~l~~~ 218 (397)
+-++++|+..++++|.+....+ -++.-..|.+|.+++|.+..+. .-..+-+.|+.....+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr- 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR- 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-
Confidence 3344555555555555433221 2444555566666555544221 1123345666666666
Q ss_pred CCCCCCchh----hhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCC-----Cccc-
Q 047708 219 DDLELIPRG----VLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMS-----SDMS- 288 (397)
Q Consensus 219 ~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~~- 288 (397)
+.+...|.. .+....+|+++.+..|.+.-.- ...-....+..+.+|+.|++..|.++... ..+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpeg------v~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~ 240 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEG------VTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE 240 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcch------hHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence 444433321 1233356777777766654210 00112234445667777777776532221 1133
Q ss_pred CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec--ccc----cc--cchHHHHHHHhhccceeccc
Q 047708 289 FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ--DMR----IS--GVHSWIKNLLLRSEILALVD 355 (397)
Q Consensus 289 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l--~~~----~~--~lp~~~~~~~~~L~~L~l~~ 355 (397)
++.|+.|.+.+|-....-..+.+..+.. ...++|..|.. +.. +. .+|.......+-|..|.+.+
T Consensus 241 W~~lrEL~lnDClls~~G~~~v~~~f~e---~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 241 WNLLRELRLNDCLLSNEGVKSVLRRFNE---KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred cchhhhccccchhhccccHHHHHHHhhh---hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence 5567777777665543322333344444 33444444444 111 11 24444443335666666664
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.11 E-value=0.0012 Score=56.46 Aligned_cols=186 Identities=20% Similarity=0.198 Sum_probs=86.6
Q ss_pred HHHHHHHHhhcceeeecCCcCeEEechHHHHHHHHHhcccceEEec------CCccCC--------CCCccccccCceEE
Q 047708 34 ARSAVSTLIFSYLLIDGGKEGYVKMHDVVRYVAQQIASKNKFMIKA------GVELKD--------WPSINKFEDLTGIS 99 (397)
Q Consensus 34 ~~~~~~~L~~~~l~~~~~~~~~~~~hd~~~~~~~~~~~~~~~~~~~------~~~~~~--------~~~~~~~~~l~~l~ 99 (397)
.+.|+.+|....=+...+-.+.+.-.+.++.++..++..+...+.. |..... .+....+++++.++
T Consensus 19 vk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~ 98 (388)
T COG5238 19 VKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVD 98 (388)
T ss_pred hhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence 4667777765433333334445556677888888777733332211 111111 11224456666666
Q ss_pred ccCCCccc-CCCcC-----CCCCccEEEccCCCCcccChhhh-------------cCCCcccEEEcCCCCCCCCChh---
Q 047708 100 LMFNDIHE-VPDEL-----ECPKLQALLLQENSLLVIPDRFF-------------QGMKDLKVLDMGGIRGFSLPSS--- 157 (397)
Q Consensus 100 l~~~~~~~-~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~-------------~~l~~L~~L~l~~~~~~~l~~~--- 157 (397)
++.|.+.. .|+.. .-..|..|.+++|.++.+...-+ ..-|.|++.....|++...+..
T Consensus 99 LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a 178 (388)
T COG5238 99 LSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSA 178 (388)
T ss_pred ccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHH
Confidence 66665543 22221 34556666666665443332111 2344556665555555333321
Q ss_pred --hcCcccCcEEEccCccCcCC-C-----ccccCCCCCCEEEccCCCCC-----ccchhhhCCCCCCeeecCCCC
Q 047708 158 --LSFLINLRTLSLHDCRRFGD-L-----PLIGELSLLEILDLSKSDVS-----EIPISFGRLSHLRLLDLTDCD 219 (397)
Q Consensus 158 --~~~l~~L~~L~l~~~~~~~~-~-----~~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~ 219 (397)
+..-.+|+++.+..|.+... . -.+..+.+|+.|++..|.++ .+...+...+.|+.|.+.+|.
T Consensus 179 ~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 11123455555555544221 0 12334455555555555444 122233334445555555543
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.07 E-value=6.7e-05 Score=72.59 Aligned_cols=62 Identities=27% Similarity=0.327 Sum_probs=27.2
Q ss_pred CCCCCEEEccCCC-CC--ccchhhhCCCCCCeeecCCCCCCCCCch-hhhcCCCCCCEEEeecccc
Q 047708 184 LSLLEILDLSKSD-VS--EIPISFGRLSHLRLLDLTDCDDLELIPR-GVLSRLRKLEELYMSRSFH 245 (397)
Q Consensus 184 l~~L~~L~l~~~~-~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 245 (397)
+++|+.+++..+. ++ .+......+++|++|.+.+|..++.... .+...++.|++|++++|..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4555555555554 33 1111122245555555555444322221 1123455556665555544
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=2.5e-05 Score=66.62 Aligned_cols=98 Identities=24% Similarity=0.215 Sum_probs=71.9
Q ss_pred cccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC--hhhcCcccCcEEEc
Q 047708 92 FEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP--SSLSFLINLRTLSL 169 (397)
Q Consensus 92 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l 169 (397)
+.+++.|+..++.+.++.-..+++.|++|.++-|.+..+.+ +..|..|+.|+|..|.+..+. ..+.++++|+.|-+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 44567788888888877655578888888888888777766 678888888888888886553 34667888888888
Q ss_pred cCccCcCCCc------cccCCCCCCEEE
Q 047708 170 HDCRRFGDLP------LIGELSLLEILD 191 (397)
Q Consensus 170 ~~~~~~~~~~------~~~~l~~L~~L~ 191 (397)
..|.-.+..+ .+.-|++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 8876654432 456677777775
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.00043 Score=58.81 Aligned_cols=83 Identities=28% Similarity=0.263 Sum_probs=40.4
Q ss_pred hcCCCcccEEEcCCCC--C-CCCChhhcCcccCcEEEccCccCc--CCCccccCCCCCCEEEccCCCCCccc----hhhh
Q 047708 135 FQGMKDLKVLDMGGIR--G-FSLPSSLSFLINLRTLSLHDCRRF--GDLPLIGELSLLEILDLSKSDVSEIP----ISFG 205 (397)
Q Consensus 135 ~~~l~~L~~L~l~~~~--~-~~l~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~lp----~~i~ 205 (397)
|..+++|++|.++.|. + ..++.....+++|+++++++|.+. ..++.+..+.+|..|++.+|..+.+- ..+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 3445555555555552 2 223333334455555555555542 22234445555666666665444322 2344
Q ss_pred CCCCCCeeecCC
Q 047708 206 RLSHLRLLDLTD 217 (397)
Q Consensus 206 ~l~~L~~L~l~~ 217 (397)
-+++|++|+-..
T Consensus 141 ll~~L~~LD~~d 152 (260)
T KOG2739|consen 141 LLPSLKYLDGCD 152 (260)
T ss_pred Hhhhhccccccc
Confidence 455666665554
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.93 E-value=0.00036 Score=67.48 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=25.0
Q ss_pred ccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEee
Q 047708 348 SEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLL 389 (397)
Q Consensus 348 L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~ 389 (397)
++.|.+..|...+..........+..++.+.+.+|+.+....
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 677777777766554322221126667777777777665443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=4.6e-05 Score=65.05 Aligned_cols=78 Identities=22% Similarity=0.179 Sum_probs=38.0
Q ss_pred CCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccch--hhhCCCCCCeeec
Q 047708 138 MKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPI--SFGRLSHLRLLDL 215 (397)
Q Consensus 138 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~--~i~~l~~L~~L~l 215 (397)
+.+.+.|+..||.+..+.- +.+|+.|++|.++-|.+ ..+..+..+++|++|+++.|.+..+.+ -+.++++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkI-ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKI-SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeecccc-ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 3445556666665544321 33455556666555555 222334455555555555555443321 3344444444444
Q ss_pred CC
Q 047708 216 TD 217 (397)
Q Consensus 216 ~~ 217 (397)
..
T Consensus 96 ~E 97 (388)
T KOG2123|consen 96 DE 97 (388)
T ss_pred cc
Confidence 44
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.56 E-value=0.0015 Score=55.66 Aligned_cols=111 Identities=26% Similarity=0.261 Sum_probs=77.0
Q ss_pred ccccCceEEccCCCcccCCCcCCCCCccEEEccCC--C-CcccChhhhcCCCcccEEEcCCCCCCCC--ChhhcCcccCc
Q 047708 91 KFEDLTGISLMFNDIHEVPDELECPKLQALLLQEN--S-LLVIPDRFFQGMKDLKVLDMGGIRGFSL--PSSLSFLINLR 165 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~--~-~~~~~~~~~~~l~~L~~L~l~~~~~~~l--~~~~~~l~~L~ 165 (397)
.+..+..+++.+..++.+.....+++|+.|.++.| + ...+... ...+++|++|++++|++..+ -..+..+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 34556666777777777766668889999999999 4 3344433 35679999999999998542 12356678889
Q ss_pred EEEccCccCcCCCc----cccCCCCCCEEEccCCCCCccch
Q 047708 166 TLSLHDCRRFGDLP----LIGELSLLEILDLSKSDVSEIPI 202 (397)
Q Consensus 166 ~L~l~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~lp~ 202 (397)
.|++.+|..+..-. .+.-+++|++|+-....-.+.|.
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~ 160 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPE 160 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccccCCccccc
Confidence 99999998766432 45667888888765544334444
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.30 E-value=0.017 Score=44.65 Aligned_cols=79 Identities=14% Similarity=0.221 Sum_probs=28.2
Q ss_pred CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEE
Q 047708 113 ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEIL 190 (397)
Q Consensus 113 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L 190 (397)
++++|+.+.+.. .+..+....|..+.+|+.+.+..+ +..++. .+.++.+++.+.+.. ....... .+..+++|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 344455555442 234444444555555555555443 333322 233344455555533 1111111 34445555555
Q ss_pred EccC
Q 047708 191 DLSK 194 (397)
Q Consensus 191 ~l~~ 194 (397)
.+..
T Consensus 87 ~~~~ 90 (129)
T PF13306_consen 87 DIPS 90 (129)
T ss_dssp EETT
T ss_pred ccCc
Confidence 5543
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.89 E-value=0.021 Score=44.12 Aligned_cols=107 Identities=14% Similarity=0.220 Sum_probs=55.7
Q ss_pred cChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhC
Q 047708 130 IPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGR 206 (397)
Q Consensus 130 ~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~ 206 (397)
++...|.++.+|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +..... .+..+++++.+.+.. .+..++. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4556678888888888875 344443 34666778888888774 333332 667777788888865 4444443 4455
Q ss_pred CCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeec
Q 047708 207 LSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242 (397)
Q Consensus 207 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 242 (397)
+++|+.+.+.. + +..++...+.++ +|+.+.+..
T Consensus 80 ~~~l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPS-N-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETT-T--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCc-c-ccEEchhhhcCC-CceEEEECC
Confidence 77777777755 2 555666556666 777776543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.28 E-value=0.0078 Score=30.43 Aligned_cols=19 Identities=53% Similarity=0.819 Sum_probs=10.2
Q ss_pred CCEEEccCCCCCccchhhh
Q 047708 187 LEILDLSKSDVSEIPISFG 205 (397)
Q Consensus 187 L~~L~l~~~~~~~lp~~i~ 205 (397)
|++|++++|.++.+|..++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555555443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.93 E-value=0.0087 Score=30.27 Aligned_cols=17 Identities=47% Similarity=0.598 Sum_probs=7.7
Q ss_pred ccEEEcCCCCCCCCChh
Q 047708 141 LKVLDMGGIRGFSLPSS 157 (397)
Q Consensus 141 L~~L~l~~~~~~~l~~~ 157 (397)
|++|++++|.+..+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.09 E-value=0.041 Score=25.78 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=6.1
Q ss_pred CCCEEEccCCCCCccc
Q 047708 186 LLEILDLSKSDVSEIP 201 (397)
Q Consensus 186 ~L~~L~l~~~~~~~lp 201 (397)
+|+.|++++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555544443
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.39 E-value=0.023 Score=46.74 Aligned_cols=39 Identities=10% Similarity=-0.056 Sum_probs=19.7
Q ss_pred hhccceecccCCChhhhhhccccCCCCCccEEEEeccCCc
Q 047708 346 LRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEM 385 (397)
Q Consensus 346 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L 385 (397)
++|+.|+|++|+.+++-. -.....|++|+.|.|.+.|..
T Consensus 151 ~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred cchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCchhh
Confidence 455555555555555543 222335555555555554443
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.34 E-value=0.042 Score=45.23 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=36.5
Q ss_pred hhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceE
Q 047708 346 LRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKC 387 (397)
Q Consensus 346 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~ 387 (397)
+.++.|.+.+|..+.++..+.-.+.+|+|+.|+|++||.++.
T Consensus 125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred chhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 588899999999999987666666889999999999998764
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.06 E-value=0.32 Score=25.50 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=11.4
Q ss_pred CCCCEEEccCCCCCccchh
Q 047708 185 SLLEILDLSKSDVSEIPIS 203 (397)
Q Consensus 185 ~~L~~L~l~~~~~~~lp~~ 203 (397)
++|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666554
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.06 E-value=0.32 Score=25.50 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=11.4
Q ss_pred CCCCEEEccCCCCCccchh
Q 047708 185 SLLEILDLSKSDVSEIPIS 203 (397)
Q Consensus 185 ~~L~~L~l~~~~~~~lp~~ 203 (397)
++|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666554
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.36 E-value=0.51 Score=24.69 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=7.6
Q ss_pred CccEEEccCCCCcccChh
Q 047708 116 KLQALLLQENSLLVIPDR 133 (397)
Q Consensus 116 ~L~~L~l~~~~~~~~~~~ 133 (397)
+|+.|++.+|.+..+|..
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 344444444444444433
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.36 E-value=0.51 Score=24.69 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=7.6
Q ss_pred CccEEEccCCCCcccChh
Q 047708 116 KLQALLLQENSLLVIPDR 133 (397)
Q Consensus 116 ~L~~L~l~~~~~~~~~~~ 133 (397)
+|+.|++.+|.+..+|..
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 344444444444444433
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.16 E-value=0.012 Score=49.31 Aligned_cols=85 Identities=19% Similarity=0.096 Sum_probs=63.6
Q ss_pred hcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeee
Q 047708 135 FQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLD 214 (397)
Q Consensus 135 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 214 (397)
+..++..++||++.+....+...+..++.|..|+++.+.+-..+...+++..+..++...|..+..|...+..+++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 45667778888888877666666777777777888877775556677777777788887777778888888888888877
Q ss_pred cCCCC
Q 047708 215 LTDCD 219 (397)
Q Consensus 215 l~~~~ 219 (397)
..++.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 77633
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.88 E-value=0.31 Score=25.63 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=12.3
Q ss_pred CCCccEEEEeccCCce
Q 047708 371 FNELMFLGIFGCNEMK 386 (397)
Q Consensus 371 ~~~L~~L~i~~c~~L~ 386 (397)
+|+|++|+|++|+.++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4778888888888764
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.57 E-value=0.033 Score=46.85 Aligned_cols=94 Identities=13% Similarity=0.004 Sum_probs=75.7
Q ss_pred CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEc
Q 047708 113 ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDL 192 (397)
Q Consensus 113 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 192 (397)
.+...+.|+++.|+...+... |+.+..|..|+++.+.+..+|..++.+..++.+++..|.....|.+.++.+++++++.
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 678888999999986655544 5777788889999999999999999999999999999888777779999999999999
Q ss_pred cCCCCC-ccchhhhCC
Q 047708 193 SKSDVS-EIPISFGRL 207 (397)
Q Consensus 193 ~~~~~~-~lp~~i~~l 207 (397)
.++.+. .+-..++.+
T Consensus 119 k~~~~~~~~~~~v~~c 134 (326)
T KOG0473|consen 119 KKTEFFRKLFGFVWSC 134 (326)
T ss_pred ccCcchHHHHhHhhhh
Confidence 888755 333333433
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.41 E-value=2.4 Score=22.30 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=11.6
Q ss_pred CCCEEEccCCCCCccch
Q 047708 186 LLEILDLSKSDVSEIPI 202 (397)
Q Consensus 186 ~L~~L~l~~~~~~~lp~ 202 (397)
+|+.|++++|.++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56677777777776664
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=69.36 E-value=0.089 Score=50.44 Aligned_cols=177 Identities=25% Similarity=0.154 Sum_probs=104.6
Q ss_pred CceEEccCCCcccCC-----CcC-CCCCccEEEccCCCCcccChhh----hcC-CCcccEEEcCCCCCC-----CCChhh
Q 047708 95 LTGISLMFNDIHEVP-----DEL-ECPKLQALLLQENSLLVIPDRF----FQG-MKDLKVLDMGGIRGF-----SLPSSL 158 (397)
Q Consensus 95 l~~l~l~~~~~~~~~-----~~~-~~~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~-----~l~~~~ 158 (397)
+..+.+.+|.+.... ... ....|..|++++|.+++..... +.. -+.+++|++..|.+. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 566777777665421 112 5567778888888755322111 112 245677777777662 234456
Q ss_pred cCcccCcEEEccCccCcCC----C-cc----ccCCCCCCEEEccCCCCC-----ccchhhhCCCC-CCeeecCCCCCCCC
Q 047708 159 SFLINLRTLSLHDCRRFGD----L-PL----IGELSLLEILDLSKSDVS-----EIPISFGRLSH-LRLLDLTDCDDLEL 223 (397)
Q Consensus 159 ~~l~~L~~L~l~~~~~~~~----~-~~----~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~-L~~L~l~~~~~~~~ 223 (397)
....+++.++++.|.+... + .. +....++++|++.+|.++ .+...+...+. +..|++.. +.+..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS-NKLGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh-cCcch
Confidence 6677788888888876322 1 12 235777888888888766 22234455555 66677777 44332
Q ss_pred C-----chhhhcCC-CCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCC
Q 047708 224 I-----PRGVLSRL-RKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNG 280 (397)
Q Consensus 224 ~-----~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 280 (397)
. .+. +..+ ..++++++..|.+... ........+..++.++++.++.|..
T Consensus 248 ~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~-------~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 248 VGVEKLLPC-LSVLSETLRVLDLSRNSITEK-------GVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHHHHH-hcccchhhhhhhhhcCCcccc-------chHHHHHHHhhhHHHHHhhcccCcc
Confidence 2 122 3444 5678888888887642 1223445566677888888888764
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=62.23 E-value=0.092 Score=50.34 Aligned_cols=202 Identities=20% Similarity=0.158 Sum_probs=123.1
Q ss_pred ccEEEccCCCCcccCh----hhhcCCCcccEEEcCCCCCCCC-----ChhhcCc-ccCcEEEccCccCcCCC-----ccc
Q 047708 117 LQALLLQENSLLVIPD----RFFQGMKDLKVLDMGGIRGFSL-----PSSLSFL-INLRTLSLHDCRRFGDL-----PLI 181 (397)
Q Consensus 117 L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~l-----~~~~~~l-~~L~~L~l~~~~~~~~~-----~~~ 181 (397)
+..+.+.+|.+.+-.. ..+...++|..|+++++.+... -..+... ..|++|++..|.+...- ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7788888888554432 2356788899999999988521 1122222 45777888888775432 255
Q ss_pred cCCCCCCEEEccCCCCC-----ccchhhh----CCCCCCeeecCCCCCCCCCch---hhhcCCCC-CCEEEeeccccccc
Q 047708 182 GELSLLEILDLSKSDVS-----EIPISFG----RLSHLRLLDLTDCDDLELIPR---GVLSRLRK-LEELYMSRSFHHWQ 248 (397)
Q Consensus 182 ~~l~~L~~L~l~~~~~~-----~lp~~i~----~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~-L~~L~l~~~~~~~~ 248 (397)
.....++.++++.|.+. .++..+. ...++++|.+.+|........ ..+...+. +.++++..|.+...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 66788888888888663 2333444 477888898888654422111 12444555 66788887776531
Q ss_pred ccCCCccCccccccccCCC-CCCCEEEEeccCCCC-----CCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccc
Q 047708 249 FEGEEDSSSNAKFIELGSL-SRLTSLHIHIPNGKI-----MSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKR 321 (397)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~-----~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~ 321 (397)
........+..+ ..++.++++.|++.. +...+. +++++.+.+..++.........+..+..
T Consensus 249 -------g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~----- 316 (478)
T KOG4308|consen 249 -------GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALER----- 316 (478)
T ss_pred -------HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhh-----
Confidence 011233344445 677899998888433 233344 7789999998887665433333444444
Q ss_pred cccccceec
Q 047708 322 CSRAMGLSQ 330 (397)
Q Consensus 322 ~~~L~~L~l 330 (397)
...+..+.+
T Consensus 317 ~~~~~~~~l 325 (478)
T KOG4308|consen 317 KTPLLHLVL 325 (478)
T ss_pred cccchhhhc
Confidence 444555555
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=60.50 E-value=5.1 Score=20.27 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=5.0
Q ss_pred CcccEEEcCCCCC
Q 047708 139 KDLKVLDMGGIRG 151 (397)
Q Consensus 139 ~~L~~L~l~~~~~ 151 (397)
++|++|++++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3444555544443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=59.21 E-value=9 Score=20.15 Aligned_cols=15 Identities=40% Similarity=0.569 Sum_probs=8.0
Q ss_pred CCCCEEEccCCCCCc
Q 047708 185 SLLEILDLSKSDVSE 199 (397)
Q Consensus 185 ~~L~~L~l~~~~~~~ 199 (397)
.+|+.|+++.|.++.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455555555555543
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=46.97 E-value=17 Score=19.34 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=7.9
Q ss_pred CcccEEEcCCCCC
Q 047708 139 KDLKVLDMGGIRG 151 (397)
Q Consensus 139 ~~L~~L~l~~~~~ 151 (397)
++|++|+|++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 3566666666655
No 89
>PF14162 YozD: YozD-like protein
Probab=35.67 E-value=38 Score=21.02 Aligned_cols=20 Identities=10% Similarity=-0.115 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhcceeee
Q 047708 30 ARGRARSAVSTLIFSYLLID 49 (397)
Q Consensus 30 ~~~~~~~~~~~L~~~~l~~~ 49 (397)
.+++|+-++.+|+.|+++-.
T Consensus 10 TEEIAefFy~eL~kRGyvP~ 29 (57)
T PF14162_consen 10 TEEIAEFFYHELVKRGYVPT 29 (57)
T ss_pred HHHHHHHHHHHHHHccCCCc
Confidence 46678889999999999843
No 90
>PF08362 TetR_C_3: YcdC-like protein, C-terminal region; InterPro: IPR013573 This entry represents the C-terminal domain found in the hypothetical transcriptional regulators RutR and YcdC (P75899 from SWISSPROT) from Escherichia coli. Both of these proteins are member of the TetR (tetracycline resistance) transcriptional regulator family of proteins. RutR negatively controls the transcription of the rut operon involved in pyrimidine utilization. The C-terminal domains of RutR, YsiA and TetR share a multi-helical, interlocking structure. These proteins also contain helix-turn-helix (HTH) DNA-binding domains.; GO: 0045892 negative regulation of transcription, DNA-dependent; PDB: 3LOC_B.
Probab=29.80 E-value=33 Score=26.99 Aligned_cols=18 Identities=11% Similarity=-0.093 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhccccccc
Q 047708 8 IEVLARYGWGLRCLQNVD 25 (397)
Q Consensus 8 ~~~Li~~Wia~g~i~~~~ 25 (397)
+-.+|+.||++|.+.+.+
T Consensus 72 ~~~~I~~Wi~~G~i~~vd 89 (143)
T PF08362_consen 72 KVAVIERWIAQGKIAPVD 89 (143)
T ss_dssp HHHHHHHHHHTTSS-S--
T ss_pred HHHHHHHHHHCCCCCCCC
Confidence 558999999999997654
No 91
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=27.66 E-value=1.4e+02 Score=21.01 Aligned_cols=39 Identities=13% Similarity=-0.161 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhhcceeeecC
Q 047708 6 IPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGG 51 (397)
Q Consensus 6 ~~~~~Li~~Wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~ 51 (397)
|.-.++|.+.+..|.+.. .+ .|..+-+.|.+.+++..+.
T Consensus 31 F~GselVdWL~~~~~~~s---R~----eAv~lg~~Ll~~G~i~HV~ 69 (83)
T cd04443 31 FCGCDLVSWLIEVGLAQD---RG----EAVLYGRRLLQGGVLQHIT 69 (83)
T ss_pred ccHHHHHHHHHHcCCCCC---HH----HHHHHHHHHHHCCCEEecC
Confidence 455678886666666542 22 2677888899999999883
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.15 E-value=40 Score=32.74 Aligned_cols=63 Identities=25% Similarity=0.195 Sum_probs=29.9
Q ss_pred CCCCccEEEccCCCCcccC--hhhhcCCCcccEEEcCCCC--CCCCChhhcC--cccCcEEEccCccCcC
Q 047708 113 ECPKLQALLLQENSLLVIP--DRFFQGMKDLKVLDMGGIR--GFSLPSSLSF--LINLRTLSLHDCRRFG 176 (397)
Q Consensus 113 ~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~--~~~l~~~~~~--l~~L~~L~l~~~~~~~ 176 (397)
+.+.+..+.+++|++..+. .++-...|+|+.|+|++|. +... .++.+ ..-|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCcccc
Confidence 4555556666666533221 1233455666666666662 2111 12222 2235566666665543
No 93
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=25.68 E-value=2.3e+02 Score=20.54 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhcceeeecCCc--CeEEechHHHHHHH
Q 047708 30 ARGRARSAVSTLIFSYLLIDGGKE--GYVKMHDVVRYVAQ 67 (397)
Q Consensus 30 ~~~~~~~~~~~L~~~~l~~~~~~~--~~~~~hd~~~~~~~ 67 (397)
.+..|.+|+++|++++++...+.+ +.|.+.+-=.++..
T Consensus 44 ny~~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~KG~~fle 83 (95)
T COG3432 44 NYKRAQKYIEMLVEKGLIIKQDNGRRKVYELTEKGKRFLE 83 (95)
T ss_pred CHHHHHHHHHHHHhCCCEEeccCCccceEEEChhHHHHHH
Confidence 456699999999999977665333 25888776555543
No 94
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=23.87 E-value=2.1e+02 Score=18.53 Aligned_cols=45 Identities=20% Similarity=0.037 Sum_probs=27.1
Q ss_pred HHHHHHHhhccccccccHHHHHHH----------HHHHHHHHhhcceeeecCCcC
Q 047708 10 VLARYGWGLRCLQNVDSVEKARGR----------ARSAVSTLIFSYLLIDGGKEG 54 (397)
Q Consensus 10 ~Li~~Wia~g~i~~~~~~~~~~~~----------~~~~~~~L~~~~l~~~~~~~~ 54 (397)
+-|..||..|-..++.......+. +.+-+..|.+.++++.....+
T Consensus 7 ~~l~~~I~~g~~~~g~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~~~~~G 61 (64)
T PF00392_consen 7 DQLRQAILSGRLPPGDRLPSERELAERYGVSRTTVREALRRLEAEGLIERRPGRG 61 (64)
T ss_dssp HHHHHHHHTTSS-TTSBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTE
T ss_pred HHHHHHHHcCCCCCCCEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEEECCce
Confidence 345678888877766544222233 344488899999988764443
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=21.17 E-value=63 Score=31.49 Aligned_cols=84 Identities=20% Similarity=0.149 Sum_probs=50.1
Q ss_pred CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-cc--ccccchHHHHHH-HhhccceecccCCChhhhhh
Q 047708 289 FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DM--RISGVHSWIKNL-LLRSEILALVDVNDLENIVS 364 (397)
Q Consensus 289 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~--~~~~lp~~~~~~-~~~L~~L~l~~c~~l~~l~~ 364 (397)
.+.+.+++++.|....- +.++.+.. ..++++.|++ ++ .+...+ ++... ...|++|.+.+.+-.+....
T Consensus 217 ~p~i~sl~lsnNrL~~L---d~~sslsq----~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHL---DALSSLSQ----IAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred Ccceeeeecccchhhch---hhhhHHHH----hcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhh
Confidence 67888888887765422 22444444 5789999999 44 222222 33221 14788999998665444311
Q ss_pred -----ccccCCCCCccEEEEe
Q 047708 365 -----DLANDGFNELMFLGIF 380 (397)
Q Consensus 365 -----~~~~~~~~~L~~L~i~ 380 (397)
......||+|..|+=.
T Consensus 289 ~s~yv~~i~~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 289 RSEYVSAIRELFPKLLRLDGV 309 (585)
T ss_pred hHHHHHHHHHhcchheeecCc
Confidence 1233579999888743
Done!