Query 047708
Match_columns 397
No_of_seqs 272 out of 3287
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 00:42:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 4.4E-25 1.5E-29 202.8 23.8 268 80-383 53-322 (347)
2 2id5_A Lingo-1, leucine rich r 99.9 7.1E-25 2.4E-29 210.2 22.5 210 79-301 19-235 (477)
3 4fmz_A Internalin; leucine ric 99.9 2E-24 6.9E-29 198.4 23.4 268 79-383 74-344 (347)
4 3o6n_A APL1; leucine-rich repe 99.9 1E-24 3.5E-29 203.6 20.1 271 92-383 44-350 (390)
5 3v47_A TOLL-like receptor 5B a 99.9 8.7E-25 3E-29 208.3 18.9 291 78-383 17-406 (455)
6 2id5_A Lingo-1, leucine rich r 99.9 5.4E-25 1.8E-29 211.0 16.3 272 88-383 51-331 (477)
7 2z80_A TOLL-like receptor 2, v 99.9 5.3E-25 1.8E-29 202.7 13.7 272 91-383 29-312 (353)
8 4fcg_A Uncharacterized protein 99.9 2.1E-24 7E-29 196.4 16.9 200 92-305 80-292 (328)
9 3oja_B Anopheles plasmodium-re 99.9 3.1E-24 1E-28 211.2 18.7 269 91-383 73-356 (597)
10 3rgz_A Protein brassinosteroid 99.9 2.5E-24 8.6E-29 217.8 18.5 153 115-279 394-549 (768)
11 3rgz_A Protein brassinosteroid 99.9 6.7E-25 2.3E-29 221.9 13.9 255 92-357 393-715 (768)
12 4eco_A Uncharacterized protein 99.9 1.5E-25 5E-30 221.9 8.5 208 137-363 247-473 (636)
13 1o6v_A Internalin A; bacterial 99.9 2.3E-23 8E-28 198.9 22.3 278 80-383 55-364 (466)
14 4eco_A Uncharacterized protein 99.9 3.8E-25 1.3E-29 218.9 10.0 286 91-391 247-584 (636)
15 4ecn_A Leucine-rich repeat pro 99.9 1.1E-24 3.9E-29 219.9 13.0 276 89-382 444-786 (876)
16 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-23 5.8E-28 202.8 19.1 140 230-383 321-479 (520)
17 4fcg_A Uncharacterized protein 99.9 4.1E-24 1.4E-28 194.4 13.1 219 114-381 80-310 (328)
18 3t6q_A CD180 antigen; protein- 99.9 5.5E-23 1.9E-27 202.9 21.9 290 80-382 21-386 (606)
19 3vq2_A TLR4, TOLL-like recepto 99.9 5.7E-23 2E-27 202.8 21.7 146 78-225 18-169 (606)
20 4ecn_A Leucine-rich repeat pro 99.9 3E-24 1E-28 216.7 12.6 287 91-392 489-825 (876)
21 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-23 5.4E-28 198.9 16.8 244 83-363 54-303 (457)
22 1o6v_A Internalin A; bacterial 99.9 7.8E-23 2.7E-27 195.3 21.5 282 80-388 77-390 (466)
23 1xku_A Decorin; proteoglycan, 99.9 6.2E-23 2.1E-27 187.1 19.5 262 94-383 32-304 (330)
24 1xku_A Decorin; proteoglycan, 99.9 7E-23 2.4E-27 186.7 19.4 274 80-382 40-329 (330)
25 3t6q_A CD180 antigen; protein- 99.9 1.7E-23 5.7E-28 206.7 16.4 196 94-301 255-460 (606)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.6E-23 1.6E-27 201.6 19.2 140 230-383 350-508 (562)
27 2ft3_A Biglycan; proteoglycan, 99.9 3E-23 1E-27 189.4 16.6 264 92-383 53-331 (332)
28 1ogq_A PGIP-2, polygalacturona 99.9 3.9E-24 1.3E-28 193.4 10.5 196 93-302 50-256 (313)
29 2ft3_A Biglycan; proteoglycan, 99.9 2.7E-23 9.1E-28 189.7 16.0 263 93-384 33-306 (332)
30 2z63_A TOLL-like receptor 4, v 99.9 2.8E-23 9.6E-28 203.5 17.1 167 79-247 15-191 (570)
31 3o6n_A APL1; leucine-rich repe 99.9 3.4E-23 1.2E-27 193.3 15.5 263 111-389 41-334 (390)
32 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-22 4.6E-27 192.5 19.5 144 90-246 82-225 (457)
33 1ogq_A PGIP-2, polygalacturona 99.9 1.6E-24 5.3E-29 196.0 5.4 246 115-389 50-308 (313)
34 2z81_A CD282 antigen, TOLL-lik 99.9 7.8E-23 2.7E-27 199.5 17.3 209 80-301 14-234 (549)
35 3v47_A TOLL-like receptor 5B a 99.9 8.7E-23 3E-27 194.5 16.9 281 96-391 13-389 (455)
36 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-22 9E-27 179.0 17.9 211 80-303 20-238 (285)
37 3vq2_A TLR4, TOLL-like recepto 99.9 1.8E-22 6.1E-27 199.3 18.5 195 95-302 13-216 (606)
38 2z81_A CD282 antigen, TOLL-lik 99.9 8.3E-23 2.9E-27 199.3 15.9 291 88-390 45-427 (549)
39 1ozn_A Reticulon 4 receptor; N 99.9 4.6E-22 1.6E-26 177.4 19.0 262 96-382 14-284 (285)
40 3zyj_A Leucine-rich repeat-con 99.9 1.8E-22 6.1E-27 191.4 16.4 227 80-330 52-286 (440)
41 3zyi_A Leucine-rich repeat-con 99.9 1.5E-22 5.3E-27 192.5 16.0 227 80-330 63-297 (452)
42 2z7x_B TOLL-like receptor 1, v 99.9 3.5E-22 1.2E-26 193.6 18.8 147 79-231 8-162 (520)
43 2z80_A TOLL-like receptor 2, v 99.9 2.6E-22 8.9E-27 184.7 16.6 260 79-357 39-312 (353)
44 3oja_B Anopheles plasmodium-re 99.9 1.1E-22 3.8E-27 200.0 15.0 278 91-389 49-340 (597)
45 3j0a_A TOLL-like receptor 5; m 99.9 7.4E-22 2.5E-26 201.7 21.0 291 77-382 10-372 (844)
46 1ziw_A TOLL-like receptor 3; i 99.9 7.5E-22 2.6E-26 197.4 19.1 167 80-248 13-186 (680)
47 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-21 4.1E-26 191.6 20.1 139 77-220 37-181 (562)
48 1ziw_A TOLL-like receptor 3; i 99.9 8.3E-22 2.8E-26 197.1 18.4 287 80-390 34-372 (680)
49 2z66_A Variable lymphocyte rec 99.9 2E-22 6.9E-27 181.7 11.5 235 79-335 15-261 (306)
50 1p9a_G Platelet glycoprotein I 99.9 6.8E-21 2.3E-25 170.0 18.8 201 89-303 6-208 (290)
51 2z66_A Variable lymphocyte rec 99.9 4.4E-21 1.5E-25 172.9 16.7 241 96-357 10-259 (306)
52 3g06_A SSPH2 (leucine-rich rep 99.9 5.5E-20 1.9E-24 179.9 24.7 249 78-384 47-296 (622)
53 3zyj_A Leucine-rich repeat-con 99.9 1.1E-20 3.6E-25 179.1 18.7 240 95-357 45-290 (440)
54 1h6u_A Internalin H; cell adhe 99.9 2E-20 6.8E-25 168.5 19.4 194 88-303 36-230 (308)
55 3zyi_A Leucine-rich repeat-con 99.9 1.4E-20 4.7E-25 179.0 18.7 240 95-357 56-301 (452)
56 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-20 4.5E-25 186.8 19.3 139 79-218 39-183 (635)
57 3j0a_A TOLL-like receptor 5; m 99.9 5.9E-21 2E-25 195.0 17.1 273 88-390 43-398 (844)
58 3o53_A Protein LRIM1, AGAP0063 99.9 2.4E-23 8.3E-28 188.6 -0.9 239 91-362 32-278 (317)
59 2z63_A TOLL-like receptor 4, v 99.9 1.1E-20 3.9E-25 185.0 17.6 193 95-300 9-210 (570)
60 3o53_A Protein LRIM1, AGAP0063 99.9 3.3E-22 1.1E-26 181.1 6.2 214 114-357 33-248 (317)
61 2o6q_A Variable lymphocyte rec 99.9 5.7E-20 2E-24 162.5 20.2 197 94-303 17-218 (270)
62 3rfs_A Internalin B, repeat mo 99.8 2.4E-21 8.2E-26 171.5 9.1 153 91-246 39-194 (272)
63 2z62_A TOLL-like receptor 4, v 99.8 6.9E-20 2.4E-24 162.5 18.5 209 81-303 17-237 (276)
64 1jl5_A Outer protein YOPM; leu 99.8 1.5E-19 5E-24 171.5 20.3 246 93-383 111-368 (454)
65 3g06_A SSPH2 (leucine-rich rep 99.8 1.3E-19 4.5E-24 177.2 20.0 238 94-391 41-279 (622)
66 1jl5_A Outer protein YOPM; leu 99.8 3.4E-19 1.2E-23 168.9 21.0 262 93-391 131-417 (454)
67 2o6q_A Variable lymphocyte rec 99.8 5E-19 1.7E-23 156.4 20.7 189 79-280 24-217 (270)
68 1wwl_A Monocyte differentiatio 99.8 2E-22 6.9E-27 182.1 -1.6 55 322-383 252-307 (312)
69 3oja_A Leucine-rich immune mol 99.8 1.4E-20 4.9E-25 180.1 8.9 232 91-354 32-270 (487)
70 3rfs_A Internalin B, repeat mo 99.8 7.4E-19 2.5E-23 155.5 18.9 222 91-343 17-244 (272)
71 4g8a_A TOLL-like receptor 4; l 99.8 1.2E-19 4E-24 179.9 15.2 121 79-199 60-187 (635)
72 1h6u_A Internalin H; cell adhe 99.8 8.2E-19 2.8E-23 158.0 19.1 186 79-285 49-234 (308)
73 2z62_A TOLL-like receptor 4, v 99.8 2.6E-19 9E-24 158.8 15.4 216 97-335 11-237 (276)
74 2xwt_C Thyrotropin receptor; s 99.8 1.7E-19 5.9E-24 156.4 13.0 201 83-300 23-236 (239)
75 3oja_A Leucine-rich immune mol 99.8 2.9E-20 1E-24 177.9 8.5 236 113-380 32-270 (487)
76 3m19_A Variable lymphocyte rec 99.8 2.7E-18 9.4E-23 149.9 18.7 174 94-280 15-191 (251)
77 1h6t_A Internalin B; cell adhe 99.8 1.8E-18 6.3E-23 154.3 17.4 177 87-284 40-216 (291)
78 1wwl_A Monocyte differentiatio 99.8 8.5E-20 2.9E-24 164.8 8.1 80 138-217 94-182 (312)
79 1p9a_G Platelet glycoprotein I 99.8 4E-18 1.4E-22 152.0 17.7 186 80-281 19-208 (290)
80 2xwt_C Thyrotropin receptor; s 99.8 3.9E-19 1.3E-23 154.2 9.6 182 104-300 22-215 (239)
81 1h6t_A Internalin B; cell adhe 99.8 1.2E-18 4.3E-23 155.4 11.2 191 91-303 22-213 (291)
82 1z7x_W Ribonuclease inhibitor; 99.8 3.3E-19 1.1E-23 169.9 5.1 178 94-279 86-295 (461)
83 2o6s_A Variable lymphocyte rec 99.7 1.7E-17 5.7E-22 140.6 14.6 173 96-288 10-186 (208)
84 1m9s_A Internalin B; cell inva 99.7 1.7E-17 5.8E-22 162.1 16.4 176 87-283 37-212 (605)
85 3m19_A Variable lymphocyte rec 99.7 7.3E-17 2.5E-21 140.9 18.7 167 79-247 22-193 (251)
86 2ca6_A RAN GTPase-activating p 99.7 3.6E-19 1.2E-23 165.7 3.8 39 136-174 91-134 (386)
87 1z7x_W Ribonuclease inhibitor; 99.7 3.5E-19 1.2E-23 169.8 3.7 281 90-386 53-383 (461)
88 4glp_A Monocyte differentiatio 99.7 6.2E-18 2.1E-22 152.5 11.3 197 94-303 65-285 (310)
89 2ast_B S-phase kinase-associat 99.7 1.3E-18 4.6E-23 158.7 5.8 224 115-362 70-308 (336)
90 2ast_B S-phase kinase-associat 99.7 6.5E-19 2.2E-23 160.8 3.3 218 116-356 48-282 (336)
91 4ay9_X Follicle-stimulating ho 99.7 8.9E-18 3E-22 154.1 10.6 193 96-301 12-213 (350)
92 4glp_A Monocyte differentiatio 99.7 1.3E-17 4.6E-22 150.3 11.6 196 92-303 90-307 (310)
93 2ca6_A RAN GTPase-activating p 99.7 3.2E-18 1.1E-22 159.3 7.7 265 107-383 23-341 (386)
94 1m9s_A Internalin B; cell inva 99.7 9E-18 3.1E-22 164.0 9.5 191 91-303 19-210 (605)
95 3cvr_A Invasion plasmid antige 99.7 1.8E-16 6.2E-21 153.2 18.0 179 94-304 60-244 (571)
96 1xeu_A Internalin C; cellular 99.7 1.3E-17 4.5E-22 146.4 9.0 169 91-281 17-185 (263)
97 3e6j_A Variable lymphocyte rec 99.7 2.5E-16 8.7E-21 135.3 16.6 151 95-247 21-173 (229)
98 3ogk_B Coronatine-insensitive 99.7 1.2E-17 4.2E-22 164.2 9.4 271 91-383 190-524 (592)
99 4ezg_A Putative uncharacterize 99.7 7.8E-17 2.7E-21 135.2 12.7 128 136-279 63-192 (197)
100 3ogk_B Coronatine-insensitive 99.7 2.9E-17 1E-21 161.5 11.6 287 91-383 162-499 (592)
101 4ezg_A Putative uncharacterize 99.7 1.1E-16 3.9E-21 134.2 13.2 152 90-247 41-195 (197)
102 2v9t_B SLIT homolog 2 protein 99.7 4.8E-16 1.6E-20 132.7 14.8 149 96-246 14-165 (220)
103 2o6s_A Variable lymphocyte rec 99.7 3.6E-16 1.2E-20 132.4 13.8 162 80-250 16-182 (208)
104 3goz_A Leucine-rich repeat-con 99.7 2.2E-17 7.4E-22 152.2 6.7 235 92-336 21-298 (362)
105 2v70_A SLIT-2, SLIT homolog 2 99.7 6.8E-16 2.3E-20 131.7 14.4 150 96-247 14-167 (220)
106 1xeu_A Internalin C; cellular 99.7 8.2E-16 2.8E-20 135.0 15.2 156 83-247 31-186 (263)
107 3goz_A Leucine-rich repeat-con 99.7 6.5E-17 2.2E-21 149.0 8.1 246 98-357 3-295 (362)
108 4ay9_X Follicle-stimulating ho 99.7 1.4E-16 4.8E-21 146.1 8.9 236 118-381 12-255 (350)
109 2xot_A Amphoterin-induced prot 99.7 6.9E-16 2.4E-20 142.1 12.7 149 96-246 21-176 (361)
110 2xot_A Amphoterin-induced prot 99.6 2.6E-15 9E-20 138.2 14.0 167 78-246 25-202 (361)
111 2v9t_B SLIT homolog 2 protein 99.6 4E-15 1.4E-19 127.0 14.0 145 143-301 15-163 (220)
112 3e6j_A Variable lymphocyte rec 99.6 8.3E-15 2.8E-19 125.8 15.0 147 117-279 21-170 (229)
113 2v70_A SLIT-2, SLIT homolog 2 99.6 7.6E-15 2.6E-19 125.2 14.4 146 143-302 15-165 (220)
114 3cvr_A Invasion plasmid antige 99.6 1.3E-14 4.5E-19 140.3 17.3 177 79-288 67-251 (571)
115 1dce_A Protein (RAB geranylger 99.6 8.7E-18 3E-22 163.1 -5.6 79 164-246 443-521 (567)
116 2p1m_B Transport inhibitor res 99.6 6.7E-16 2.3E-20 151.8 7.8 38 346-384 481-518 (594)
117 2ell_A Acidic leucine-rich nuc 99.6 9E-15 3.1E-19 119.3 12.6 140 137-286 22-165 (168)
118 2p1m_B Transport inhibitor res 99.6 5.7E-16 1.9E-20 152.3 5.4 266 113-389 103-419 (594)
119 2ell_A Acidic leucine-rich nuc 99.5 2E-14 7E-19 117.1 10.4 129 115-246 24-160 (168)
120 2je0_A Acidic leucine-rich nuc 99.5 4.1E-14 1.4E-18 112.9 9.8 123 92-216 16-148 (149)
121 2je0_A Acidic leucine-rich nuc 99.5 3.7E-14 1.3E-18 113.2 9.0 129 138-276 16-148 (149)
122 2wfh_A SLIT homolog 2 protein 99.5 1.9E-13 6.4E-18 114.0 12.9 124 119-246 14-139 (193)
123 1a9n_A U2A', U2A'; complex (nu 99.5 1.8E-14 6.1E-19 118.4 6.4 129 113-244 17-151 (176)
124 4b8c_D Glucose-repressible alc 99.5 5.6E-14 1.9E-18 140.6 11.0 156 92-250 172-333 (727)
125 1w8a_A SLIT protein; signaling 99.5 2E-13 6.9E-18 113.8 11.4 121 96-217 11-135 (192)
126 4b8c_D Glucose-repressible alc 99.5 1.3E-14 4.6E-19 145.0 4.8 139 109-249 217-357 (727)
127 1w8a_A SLIT protein; signaling 99.5 2.9E-13 1E-17 112.7 11.9 124 118-245 11-138 (192)
128 1a9n_A U2A', U2A'; complex (nu 99.5 8.3E-14 2.9E-18 114.4 8.2 129 89-219 15-151 (176)
129 2o6r_A Variable lymphocyte rec 99.4 2E-12 6.8E-17 106.2 13.9 121 96-217 10-133 (177)
130 2wfh_A SLIT homolog 2 protein 99.4 2.7E-12 9.2E-17 106.9 14.2 123 96-220 13-138 (193)
131 2o6r_A Variable lymphocyte rec 99.4 2.2E-12 7.7E-17 105.9 13.6 127 117-247 9-138 (177)
132 1dce_A Protein (RAB geranylger 99.4 2.5E-12 8.5E-17 124.8 12.1 172 91-274 347-566 (567)
133 3sb4_A Hypothetical leucine ri 99.3 3.2E-12 1.1E-16 116.0 10.3 57 114-171 100-157 (329)
134 1ds9_A Outer arm dynein; leuci 99.3 5.2E-14 1.8E-18 118.0 -1.9 117 127-247 37-154 (198)
135 2r9u_A Variable lymphocyte rec 99.3 4.4E-11 1.5E-15 97.7 11.5 97 118-217 15-114 (174)
136 3g39_A Variable lymphocyte rec 99.3 4.6E-11 1.6E-15 97.3 11.6 102 142-246 12-115 (170)
137 2r9u_A Variable lymphocyte rec 99.3 4.5E-11 1.5E-15 97.7 11.3 108 96-204 15-124 (174)
138 1ds9_A Outer arm dynein; leuci 99.2 1.6E-13 5.3E-18 115.1 -4.4 142 141-296 25-180 (198)
139 3g39_A Variable lymphocyte rec 99.2 1.2E-10 4.2E-15 94.7 12.2 102 96-198 12-115 (170)
140 3sb4_A Hypothetical leucine ri 99.2 3.1E-11 1E-15 109.5 8.8 98 92-194 48-157 (329)
141 4fdw_A Leucine rich hypothetic 99.1 1.7E-09 5.7E-14 100.4 14.8 58 181-240 176-233 (401)
142 4fdw_A Leucine rich hypothetic 99.1 3.6E-09 1.2E-13 98.2 15.5 255 93-381 113-379 (401)
143 3un9_A NLR family member X1; l 99.0 8.9E-11 3.1E-15 107.9 0.7 159 115-281 72-252 (372)
144 2ifg_A High affinity nerve gro 98.9 6.1E-09 2.1E-13 95.0 10.3 99 119-219 12-114 (347)
145 2ifg_A High affinity nerve gro 98.8 1.4E-08 5E-13 92.5 10.9 102 96-198 11-116 (347)
146 3un9_A NLR family member X1; l 98.8 8.3E-10 2.8E-14 101.4 1.2 155 92-247 71-253 (372)
147 2ra8_A Uncharacterized protein 98.6 6.1E-08 2.1E-12 88.3 7.5 57 158-216 168-227 (362)
148 4fs7_A Uncharacterized protein 98.6 3.6E-07 1.2E-11 84.8 12.5 63 316-381 313-375 (394)
149 2ra8_A Uncharacterized protein 98.4 1.4E-07 4.7E-12 86.0 5.1 80 113-194 137-228 (362)
150 2a5y_B CED-4; apoptosis; HET: 98.4 8.4E-08 2.9E-12 92.9 2.9 70 1-75 400-473 (549)
151 4gt6_A Cell surface protein; l 98.3 6.6E-06 2.2E-10 76.2 13.4 270 94-381 65-366 (394)
152 3e4g_A ATP synthase subunit S, 98.3 2.2E-06 7.5E-11 68.8 7.7 91 269-387 62-154 (176)
153 3e4g_A ATP synthase subunit S, 98.2 2E-06 6.7E-11 69.1 5.1 82 163-244 62-150 (176)
154 4gt6_A Cell surface protein; l 98.1 2.3E-05 7.8E-10 72.5 12.1 260 90-380 84-386 (394)
155 1io0_A Tropomodulin; LRR prote 98.1 2.4E-06 8.1E-11 70.1 4.0 111 135-246 32-164 (185)
156 4fs7_A Uncharacterized protein 98.0 1.5E-05 5.1E-10 73.7 9.2 212 113-355 160-375 (394)
157 1io0_A Tropomodulin; LRR prote 97.9 5.2E-06 1.8E-10 68.1 4.0 106 113-218 34-161 (185)
158 3rw6_A Nuclear RNA export fact 97.8 2E-05 6.8E-10 68.1 5.7 102 115-217 141-260 (267)
159 3rw6_A Nuclear RNA export fact 97.8 1.5E-05 5.2E-10 68.9 4.8 104 135-239 137-257 (267)
160 4h09_A Hypothetical leucine ri 97.8 0.00042 1.4E-08 63.5 14.2 77 91-171 44-122 (379)
161 1vt4_I APAF-1 related killer D 97.0 0.00048 1.6E-08 69.9 4.3 56 1-67 382-437 (1221)
162 3sfz_A APAF-1, apoptotic pepti 96.8 0.0012 4.1E-08 70.2 6.4 60 1-72 390-451 (1249)
163 4h09_A Hypothetical leucine ri 96.8 0.017 5.8E-07 52.7 12.7 125 113-242 215-342 (379)
164 3rfe_A Platelet glycoprotein I 96.1 0.011 3.7E-07 44.9 6.2 54 97-151 12-67 (130)
165 3rfe_A Platelet glycoprotein I 95.8 0.016 5.4E-07 44.0 5.8 54 189-245 12-67 (130)
166 1z6t_A APAF-1, apoptotic prote 95.0 0.028 9.6E-07 54.6 5.8 58 1-70 390-449 (591)
167 1pgv_A TMD-1, tropomodulin TMD 94.9 0.03 1E-06 45.6 5.0 82 136-217 38-135 (197)
168 1pgv_A TMD-1, tropomodulin TMD 94.9 0.042 1.4E-06 44.7 5.8 104 114-217 40-166 (197)
169 2lz0_A Uncharacterized protein 37.4 36 0.0012 23.8 3.8 43 128-171 9-52 (100)
170 2kzc_A Uncharacterized protein 35.5 21 0.00073 24.1 2.1 37 7-50 9-45 (85)
171 2lz0_A Uncharacterized protein 31.5 55 0.0019 22.8 3.9 37 113-150 18-54 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=4.4e-25 Score=202.80 Aligned_cols=268 Identities=20% Similarity=0.227 Sum_probs=177.4
Q ss_pred CCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhc
Q 047708 80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLS 159 (397)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~ 159 (397)
+..+..++....++++++|++++|.+..++....+++|++|++++|.+..++. +..+++|++|++++|.+..++. +.
T Consensus 53 ~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~ 129 (347)
T 4fmz_A 53 GEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP-LA 129 (347)
T ss_dssp SSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GT
T ss_pred CCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccCchh-hc
Confidence 45556667777888999999999988887775588899999999988777653 6889999999999988877766 78
Q ss_pred CcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEE
Q 047708 160 FLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELY 239 (397)
Q Consensus 160 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 239 (397)
.+++|++|++++|.....++.+..+++|++|++++|.+..++. +..+++|++|++++ +.+..++. +..+++|+.|+
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~-n~l~~~~~--~~~l~~L~~L~ 205 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNY-NQIEDISP--LASLTSLHYFT 205 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTT-SCCCCCGG--GGGCTTCCEEE
T ss_pred cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccC-Cccccccc--ccCCCccceee
Confidence 8888999999888776777778888888888888888877665 77888888888888 45566665 66777777777
Q ss_pred eecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhc
Q 047708 240 MSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKF 318 (397)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~ 318 (397)
+++|.+.+. ..+..+++|++|++++|....++. +. +++|+.|+++.|..... ..+..
T Consensus 206 l~~n~l~~~-------------~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~------~~~~~-- 263 (347)
T 4fmz_A 206 AYVNQITDI-------------TPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI------NAVKD-- 263 (347)
T ss_dssp CCSSCCCCC-------------GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC------GGGTT--
T ss_pred cccCCCCCC-------------chhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC------hhHhc--
Confidence 777766541 114555666666666666555554 33 56666666655543211 12222
Q ss_pred ccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708 319 KKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN 383 (397)
Q Consensus 319 ~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~ 383 (397)
+++|+.|++ ++.++.+| .+..+ ++|++|++++|. +...... ..+.+++|++|++++|+
T Consensus 264 ---l~~L~~L~l~~n~l~~~~-~~~~l-~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 264 ---LTKLKMLNVGSNQISDIS-VLNNL-SQLNSLFLNNNQ-LGNEDME-VIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ---CTTCCEEECCSSCCCCCG-GGGGC-TTCSEEECCSSC-CCGGGHH-HHHTCTTCSEEECCSSS
T ss_pred ---CCCcCEEEccCCccCCCh-hhcCC-CCCCEEECcCCc-CCCcChh-HhhccccCCEEEccCCc
Confidence 455555555 44444443 22222 455555555542 2222111 11245555555555553
No 2
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=7.1e-25 Score=210.19 Aligned_cols=210 Identities=25% Similarity=0.222 Sum_probs=152.3
Q ss_pred cCCccCCCCCccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh
Q 047708 79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS 156 (397)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 156 (397)
.+..+..+|.. -.++++.|++++|.+..++. .+ ++++|+.|++++|.+..+.+..|.++++|++|++++|.+..+|.
T Consensus 19 ~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 19 HRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp CSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred CCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCc
Confidence 34445555553 34678899999998888643 33 78899999999988777766667889999999999988877765
Q ss_pred -hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCcc-chhhhCCCCCCeeecCCCCCCCCCchhhhcCCC
Q 047708 157 -SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDDLELIPRGVLSRLR 233 (397)
Q Consensus 157 -~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 233 (397)
.+.++++|++|++++|.+....+ .+..+++|++|++++|.+..+ |..+..+++|++|++++ +.++.++...++.++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~ 176 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPTEALSHLH 176 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCCHHHHTTCT
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC-CcCcccChhHhcccC
Confidence 46788999999999988877665 788889999999998888855 45788888999999988 566777776688888
Q ss_pred CCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccC-CCCCCCccc-CCCccEEEEEecC
Q 047708 234 KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPN-GKIMSSDMS-FQNLTSFSITIGD 301 (397)
Q Consensus 234 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~-~~~L~~L~l~~~~ 301 (397)
+|+.|++.+|.+.+.. ...+..+++|++|++++|. ...++.... ..+|+.|+++.|.
T Consensus 177 ~L~~L~l~~n~i~~~~-----------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 177 GLIVLRLRHLNINAIR-----------DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp TCCEEEEESCCCCEEC-----------TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred CCcEEeCCCCcCcEeC-----------hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence 8888888888876522 2344555556666655544 333333333 3455555555443
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2e-24 Score=198.36 Aligned_cols=268 Identities=17% Similarity=0.210 Sum_probs=221.2
Q ss_pred cCCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhh
Q 047708 79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSL 158 (397)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~ 158 (397)
.++.+..++....+++|++|++++|.+..++...++++|++|++++|.+..++. +..+++|++|++++|.....+..+
T Consensus 74 ~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~ 151 (347)
T 4fmz_A 74 NGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPL 151 (347)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGG
T ss_pred cCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccch
Confidence 345566666678899999999999999998766699999999999999888876 789999999999999764455569
Q ss_pred cCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEE
Q 047708 159 SFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEEL 238 (397)
Q Consensus 159 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 238 (397)
..+++|++|++++|.+.... .+..+++|++|++++|.+..++. +..+++|++|++++ +.+..++. ++.+++|++|
T Consensus 152 ~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-n~l~~~~~--~~~~~~L~~L 226 (347)
T 4fmz_A 152 SNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYV-NQITDITP--VANMTRLNSL 226 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG--GGGCTTCCEE
T ss_pred hhCCCCcEEEecCCCcCCch-hhccCCCCCEEEccCCccccccc-ccCCCccceeeccc-CCCCCCch--hhcCCcCCEE
Confidence 99999999999999885544 48899999999999999998876 88999999999999 56666665 7899999999
Q ss_pred EeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhh
Q 047708 239 YMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRK 317 (397)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~ 317 (397)
++++|.+.. ...+..+++|++|++++|.+..++ .+. +++|+.|+++.|..... ..+..
T Consensus 227 ~l~~n~l~~-------------~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~------~~~~~- 285 (347)
T 4fmz_A 227 KIGNNKITD-------------LSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDI------SVLNN- 285 (347)
T ss_dssp ECCSSCCCC-------------CGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC------GGGGG-
T ss_pred EccCCccCC-------------CcchhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCC------hhhcC-
Confidence 999999875 122788999999999999988775 455 99999999998865432 23334
Q ss_pred cccccccccceec-cccccc-chHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708 318 FKKRCSRAMGLSQ-DMRISG-VHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN 383 (397)
Q Consensus 318 ~~~~~~~L~~L~l-~~~~~~-lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~ 383 (397)
+++|+.|++ ++.+.. .|..+..+ ++|++|++++|. ++..+. ...+++|++|++++|+
T Consensus 286 ----l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 286 ----LSQLNSLFLNNNQLGNEDMEVIGGL-TNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp ----CTTCSEEECCSSCCCGGGHHHHHTC-TTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred ----CCCCCEEECcCCcCCCcChhHhhcc-ccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 889999999 666664 44556666 699999999965 666652 4589999999999985
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1e-24 Score=203.56 Aligned_cols=271 Identities=17% Similarity=0.102 Sum_probs=148.8
Q ss_pred cccCceEEccCCCcccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEE
Q 047708 92 FEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLS 168 (397)
Q Consensus 92 ~~~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~ 168 (397)
+++++.+++.++.+..+|... .+++|+.|++++|.+..++...|..+++|++|++++|.+..++ ..++++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 444555555555555544432 4455555555555544444434455555555555555553332 2344555555555
Q ss_pred ccCccCcCCCcc-ccCCCCCCEEEccCCCCCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCC-----------
Q 047708 169 LHDCRRFGDLPL-IGELSLLEILDLSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKL----------- 235 (397)
Q Consensus 169 l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L----------- 235 (397)
+++|.+...++. +..+++|++|++++|.++.++ ..+..+++|++|++++ +.++.++ ++.+++|
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCccc---cccccccceeeccccccc
Confidence 555554433332 345555555555555554332 2344555555555554 2333332 1222333
Q ss_pred --------CEEEeecccccccccCC---------CccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEE
Q 047708 236 --------EELYMSRSFHHWQFEGE---------EDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFS 296 (397)
Q Consensus 236 --------~~L~l~~~~~~~~~~~~---------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~ 296 (397)
++|++++|.+... +.. .....-.....+..+++|++|++++|.+..+ |..+. +++|+.|+
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVV-RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEE-ECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred ccCCCCcceEEECCCCeeeec-cccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 3333333322211 000 0000001124567788888888888886555 55566 88888888
Q ss_pred EEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCcc
Q 047708 297 ITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELM 375 (397)
Q Consensus 297 l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~ 375 (397)
++.|..... + ... ..+++|+.|++ ++.+..+|.++..+ ++|++|+++++ .++.++ ...+++|+
T Consensus 279 L~~n~l~~~--~---~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~l-~~L~~L~L~~N-~i~~~~----~~~~~~L~ 342 (390)
T 3o6n_A 279 ISNNRLVAL--N---LYG-----QPIPTLKVLDLSHNHLLHVERNQPQF-DRLENLYLDHN-SIVTLK----LSTHHTLK 342 (390)
T ss_dssp CCSSCCCEE--E---CSS-----SCCTTCCEEECCSSCCCCCGGGHHHH-TTCSEEECCSS-CCCCCC----CCTTCCCS
T ss_pred CCCCcCccc--C---ccc-----CCCCCCCEEECCCCcceecCcccccc-CcCCEEECCCC-ccceeC----chhhccCC
Confidence 887765421 1 011 23788999999 77888899888877 69999999984 455543 56889999
Q ss_pred EEEEeccC
Q 047708 376 FLGIFGCN 383 (397)
Q Consensus 376 ~L~i~~c~ 383 (397)
.|++++++
T Consensus 343 ~L~l~~N~ 350 (390)
T 3o6n_A 343 NLTLSHND 350 (390)
T ss_dssp EEECCSSC
T ss_pred EEEcCCCC
Confidence 99999875
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=8.7e-25 Score=208.31 Aligned_cols=291 Identities=20% Similarity=0.218 Sum_probs=201.2
Q ss_pred ecCCccCCCCCccccccCceEEccCCCcccC-CCcC-CCCCccEEEccCCCC-cccChhhhcCCCcccEEEcCCCCCCCC
Q 047708 78 KAGVELKDWPSINKFEDLTGISLMFNDIHEV-PDEL-ECPKLQALLLQENSL-LVIPDRFFQGMKDLKVLDMGGIRGFSL 154 (397)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~l 154 (397)
..+..+..+|. -.+++++|++++|.+..+ +..+ ++++|+.|++++|.+ ..++...|.++++|++|++++|.+..+
T Consensus 17 c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 94 (455)
T 3v47_A 17 CINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94 (455)
T ss_dssp CCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE
T ss_pred cCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc
Confidence 34455666666 347899999999998885 4444 889999999999985 467666788999999999999998655
Q ss_pred -ChhhcCcccCcEEEccCccCcCCCc---cccCCCCCCEEEccCCCCCcc-chh-hhCCCCCCeeecCCCCCCCCCchhh
Q 047708 155 -PSSLSFLINLRTLSLHDCRRFGDLP---LIGELSLLEILDLSKSDVSEI-PIS-FGRLSHLRLLDLTDCDDLELIPRGV 228 (397)
Q Consensus 155 -~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~l-p~~-i~~l~~L~~L~l~~~~~~~~~~~~~ 228 (397)
|..++++++|++|++++|.+.+..+ .+..+++|++|++++|.+..+ |.. +.++++|++|++++|. +..++...
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 173 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEED 173 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTT
T ss_pred ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhh
Confidence 7788999999999999998866433 388899999999999988866 544 7889999999998844 43333222
Q ss_pred hc----------------------------------CCCCCCEEEeecccccccccCC----------------------
Q 047708 229 LS----------------------------------RLRKLEELYMSRSFHHWQFEGE---------------------- 252 (397)
Q Consensus 229 ~~----------------------------------~l~~L~~L~l~~~~~~~~~~~~---------------------- 252 (397)
+. .+++|++|++++|.+.+..+..
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence 32 2356777888777665422210
Q ss_pred ------------------------------CccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEec
Q 047708 253 ------------------------------EDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIG 300 (397)
Q Consensus 253 ------------------------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~ 300 (397)
.+......+..++.+++|++|++++|.+..+ |..+. +++|+.|+++.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp CCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 0000112234466777888888888876555 34566 788888888777
Q ss_pred CcccchhhhHHHHhhhhcccccccccceec-ccccccc-hHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEE
Q 047708 301 DLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGV-HSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLG 378 (397)
Q Consensus 301 ~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~l-p~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~ 378 (397)
..... .+ ..+.. +++|+.|++ ++.++.+ |.++..+ ++|++|+|++ +.++.++.. ....+++|++|+
T Consensus 334 ~l~~~-~~---~~~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~ 401 (455)
T 3v47_A 334 FLGSI-DS---RMFEN-----LDKLEVLDLSYNHIRALGDQSFLGL-PNLKELALDT-NQLKSVPDG-IFDRLTSLQKIW 401 (455)
T ss_dssp CCCEE-CG---GGGTT-----CTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCS-SCCSCCCTT-TTTTCTTCCEEE
T ss_pred ccCCc-Ch---hHhcC-----cccCCEEECCCCcccccChhhcccc-ccccEEECCC-CccccCCHh-HhccCCcccEEE
Confidence 54321 11 22333 777888888 6666655 5556665 5888888887 566666522 235778888888
Q ss_pred EeccC
Q 047708 379 IFGCN 383 (397)
Q Consensus 379 i~~c~ 383 (397)
+++|+
T Consensus 402 l~~N~ 406 (455)
T 3v47_A 402 LHTNP 406 (455)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 88765
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=5.4e-25 Score=211.01 Aligned_cols=272 Identities=21% Similarity=0.181 Sum_probs=221.9
Q ss_pred CccccccCceEEccCCCcccC-CCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccC
Q 047708 88 SINKFEDLTGISLMFNDIHEV-PDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINL 164 (397)
Q Consensus 88 ~~~~~~~l~~l~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L 164 (397)
....+++|+.|++++|.+..+ +..+ ++++|+.|++++|.+..++...|.++++|++|++++|.+..+ +..+..+++|
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 346789999999999999986 4445 899999999999999999988889999999999999999654 6678999999
Q ss_pred cEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeec
Q 047708 165 RTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242 (397)
Q Consensus 165 ~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 242 (397)
++|++++|.+....+ .+..+++|++|++++|.++.+|. .+..+++|+.|++++ +.+..++...+..+++|+.|++++
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH-LNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES-CCCCEECTTCSCSCTTCCEEEEEC
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC-CcCcEeChhhcccCcccceeeCCC
Confidence 999999999877666 89999999999999999998875 688999999999999 566667766689999999999999
Q ss_pred ccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc-cc-CCCccEEEEEecCcccchhhhHHHHhhhhccc
Q 047708 243 SFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-MS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKK 320 (397)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~ 320 (397)
|...+.+ ........+|++|++++|.+..+|.. +. +++|+.|+++.|..... +...+.
T Consensus 210 ~~~~~~~-----------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------~~~~~~ 269 (477)
T 2id5_A 210 WPYLDTM-----------TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI---------EGSMLH 269 (477)
T ss_dssp CTTCCEE-----------CTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE---------CTTSCT
T ss_pred Ccccccc-----------CcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc---------Chhhcc
Confidence 9877633 34444556899999999998888854 66 99999999998874421 112223
Q ss_pred ccccccceec-ccccccc-hHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708 321 RCSRAMGLSQ-DMRISGV-HSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN 383 (397)
Q Consensus 321 ~~~~L~~L~l-~~~~~~l-p~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~ 383 (397)
.+++|+.|++ ++.+..+ |..+..+ ++|++|+|++ +.++.++.. ....+++|+.|++.++|
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAVVEPYAFRGL-NYLRVLNVSG-NQLTTLEES-VFHSVGNLETLILDSNP 331 (477)
T ss_dssp TCTTCCEEECCSSCCSEECTTTBTTC-TTCCEEECCS-SCCSCCCGG-GBSCGGGCCEEECCSSC
T ss_pred ccccCCEEECCCCccceECHHHhcCc-ccCCEEECCC-CcCceeCHh-HcCCCcccCEEEccCCC
Confidence 4888999999 6777655 4455555 6999999998 567776532 23578999999999876
No 7
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=5.3e-25 Score=202.71 Aligned_cols=272 Identities=18% Similarity=0.145 Sum_probs=204.3
Q ss_pred ccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEc
Q 047708 91 KFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSL 169 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l 169 (397)
.++.....+.+++.++.+|... .++|+.|++++|.+..++...|.++++|++|++++|.+..+ |..++++++|++|++
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCCeEeeCCCCCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 3444556777888888887755 25889999999998888876778899999999999988665 456888999999999
Q ss_pred cCccCcCCCc-cccCCCCCCEEEccCCCCCccch--hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708 170 HDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI--SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH 246 (397)
Q Consensus 170 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 246 (397)
++|.+...++ .++.+++|++|++++|.++.+|. .+..+++|++|++++|+.++.++...++.+++|++|++++|.+.
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 9998877666 48889999999999998888876 68889999999999876777776666888999999999998887
Q ss_pred ccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc--CCCccEEEEEecCcccchhhhHHHHhhhhccccccc
Q 047708 247 WQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS--FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSR 324 (397)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 324 (397)
+ ..+..++.+++|++|++++|....++..+. +++|+.|+++.|........ .+..... ...
T Consensus 188 ~-----------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~~~~-----~~~ 250 (353)
T 2z80_A 188 S-----------YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS-ELSTGET-----NSL 250 (353)
T ss_dssp E-----------ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------C-----CCC
T ss_pred c-----------cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc-ccccccc-----cch
Confidence 6 335677888899999999998877776643 88999999998765432111 0111111 333
Q ss_pred ccceec------ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708 325 AMGLSQ------DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN 383 (397)
Q Consensus 325 L~~L~l------~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~ 383 (397)
++.+++ +..+..+|.++..+ ++|++|++++ +.++.++... .+.+++|++|++++|+
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~l-~~L~~L~Ls~-N~l~~i~~~~-~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQI-SGLLELEFSR-NQLKSVPDGI-FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHTC-TTCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred hhccccccccccCcchhhhHHHHhcc-cCCCEEECCC-CCCCccCHHH-HhcCCCCCEEEeeCCC
Confidence 444444 33344678777776 6999999998 5677766332 3578999999999986
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=2.1e-24 Score=196.37 Aligned_cols=200 Identities=22% Similarity=0.292 Sum_probs=162.9
Q ss_pred cccCceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEcc
Q 047708 92 FEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLH 170 (397)
Q Consensus 92 ~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 170 (397)
..+++.|+++++.+..+|..+ ++++|+.|++++|.+..+|.. ++++++|++|++++|.+..+|..++.+++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 367888999999888888766 788999999999887777765 488889999999999888888888889999999999
Q ss_pred CccCcCCCc-ccc---------CCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEe
Q 047708 171 DCRRFGDLP-LIG---------ELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYM 240 (397)
Q Consensus 171 ~~~~~~~~~-~~~---------~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 240 (397)
+|...+..| .+. .+++|++|++++|.++.+|..++++++|++|++++ +.++.+|.. ++.+++|++|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hccCCCCCEEEC
Confidence 887766655 444 48889999999888888888888899999999988 556677776 888889999999
Q ss_pred ecccccccccCCCccCccccccccCCCCCCCEEEEeccC-CCCCCCccc-CCCccEEEEEecCcccc
Q 047708 241 SRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPN-GKIMSSDMS-FQNLTSFSITIGDLAAG 305 (397)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~-~~~L~~L~l~~~~~~~~ 305 (397)
++|.+.+ .++..++.+++|++|++++|. .+.+|..+. +++|+.|+++.|.....
T Consensus 237 s~n~~~~-----------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 237 RGCTALR-----------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp TTCTTCC-----------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred cCCcchh-----------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 8888877 345667788889999998876 677777777 88888888887765433
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.1e-24 Score=211.15 Aligned_cols=269 Identities=17% Similarity=0.081 Sum_probs=150.8
Q ss_pred ccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh-hcCcccCcEE
Q 047708 91 KFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS-LSFLINLRTL 167 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L 167 (397)
.+++|+.|++++|.+..++. .+ .+++|+.|++++|.+..+++..|+++++|++|++++|.+..+|.. ++.+++|++|
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 34455555555555554332 22 455555555555555555544455555555555555555444443 2455555555
Q ss_pred EccCccCcCCCc-cccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708 168 SLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH 246 (397)
Q Consensus 168 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 246 (397)
++++|.+...++ .++.+++|++|++++|.++.++ ++.+++|++|++++| .++.+ ...++|+.|++++|.+.
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n-~l~~l-----~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN-LLSTL-----AIPIAVEELDASHNSIN 224 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSS-CCSEE-----ECCTTCSEEECCSSCCC
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccC-ccccc-----cCCchhheeeccCCccc
Confidence 555555544444 4555555555555555554442 233344444444431 11111 11222333333333322
Q ss_pred ccccCC--------CccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEecCcccchhhhHHHHhhh
Q 047708 247 WQFEGE--------EDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSR 316 (397)
Q Consensus 247 ~~~~~~--------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 316 (397)
...+.. .+...-..+..+..+++|+.|++++|.+..+ |..+. +++|+.|+++.|..... + ...
T Consensus 225 ~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~---~~~-- 297 (597)
T 3oja_B 225 VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--N---LYG-- 297 (597)
T ss_dssp EEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE--E---CSS--
T ss_pred ccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC--C---ccc--
Confidence 110000 0000001135577788899999999886555 55677 88999999887765421 1 011
Q ss_pred hcccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708 317 KFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN 383 (397)
Q Consensus 317 ~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~ 383 (397)
..+++|+.|++ ++.+..+|.++..+ ++|++|+|++|. +..+ ....+++|+.|++++|+
T Consensus 298 ---~~l~~L~~L~Ls~N~l~~i~~~~~~l-~~L~~L~L~~N~-l~~~----~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 298 ---QPIPTLKVLDLSHNHLLHVERNQPQF-DRLENLYLDHNS-IVTL----KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp ---SCCTTCCEEECCSSCCCCCGGGHHHH-TTCSEEECCSSC-CCCC----CCCTTCCCSEEECCSSC
T ss_pred ---ccCCCCcEEECCCCCCCccCcccccC-CCCCEEECCCCC-CCCc----ChhhcCCCCEEEeeCCC
Confidence 23788999999 88888999988877 699999999854 5544 35688999999999876
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=2.5e-24 Score=217.75 Aligned_cols=153 Identities=27% Similarity=0.255 Sum_probs=68.6
Q ss_pred CCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCC-CCCChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEc
Q 047708 115 PKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG-FSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDL 192 (397)
Q Consensus 115 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l 192 (397)
+.|+.|++++|.+....+..+..+++|++|++++|.+ ..+|..++.+++|++|++++|.+.+..| .+..+++|++|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 3444444444443221122234444455555554444 2344444444445555554444443333 4444444555555
Q ss_pred cCCCCC-ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCC
Q 047708 193 SKSDVS-EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLT 271 (397)
Q Consensus 193 ~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 271 (397)
++|.++ .+|..++++++|++|++++|...+.+|.. ++.+++|++|++++|.+.+ .++..++.+++|+
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~-----------~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSG-----------NIPAELGDCRSLI 541 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEE-----------ECCGGGGGCTTCC
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCcccC-----------cCCHHHcCCCCCC
Confidence 444444 34444444444555554443333334433 4444444444444444444 2234444445555
Q ss_pred EEEEeccC
Q 047708 272 SLHIHIPN 279 (397)
Q Consensus 272 ~L~l~~~~ 279 (397)
.|++++|.
T Consensus 542 ~L~Ls~N~ 549 (768)
T 3rgz_A 542 WLDLNTNL 549 (768)
T ss_dssp EEECCSSE
T ss_pred EEECCCCc
Confidence 55554443
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=6.7e-25 Score=221.92 Aligned_cols=255 Identities=18% Similarity=0.189 Sum_probs=192.3
Q ss_pred cccCceEEccCCCccc-CCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCC-CCCChhhcCcccCcEEE
Q 047708 92 FEDLTGISLMFNDIHE-VPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG-FSLPSSLSFLINLRTLS 168 (397)
Q Consensus 92 ~~~l~~l~l~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~~~~~l~~L~~L~ 168 (397)
+++++.|++.+|.+.+ +|..+ ++++|+.|++++|.+....+..+..+++|++|++++|.+ ..+|..++.+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 6779999999998885 66666 899999999999996644444579999999999999999 47899999999999999
Q ss_pred ccCccCcCCCc-cccCCCCCCEEEccCCCCC-ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708 169 LHDCRRFGDLP-LIGELSLLEILDLSKSDVS-EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH 246 (397)
Q Consensus 169 l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 246 (397)
+++|.+.+..| .+..+++|++|++++|.+. .+|..++.+++|++|++++|...+.+|.. ++.+++|+.|++++|.+.
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccC
Confidence 99999987766 8999999999999999998 88999999999999999997666678877 899999999999999999
Q ss_pred ccccCCCccC-----------------------------------------------------------ccccccccCCC
Q 047708 247 WQFEGEEDSS-----------------------------------------------------------SNAKFIELGSL 267 (397)
Q Consensus 247 ~~~~~~~~~~-----------------------------------------------------------~~~~~~~l~~l 267 (397)
+.+|...... ....+..++.+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 8777542110 01122334556
Q ss_pred CCCCEEEEeccCC-CCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccc-cchHHHHH
Q 047708 268 SRLTSLHIHIPNG-KIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRIS-GVHSWIKN 343 (397)
Q Consensus 268 ~~L~~L~l~~~~~-~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~-~lp~~~~~ 343 (397)
++|+.|++++|.+ +.+|..++ +++|+.|+++.|......+ ..+.. +.+|+.|++ .+.++ .+|..+..
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip----~~l~~-----L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP----DEVGD-----LRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC----GGGGG-----CTTCCEEECCSSCCEECCCGGGGG
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC----hHHhC-----CCCCCEEECCCCcccCcCChHHhC
Confidence 6677777777763 45666666 7777777776665432221 23333 556666666 44443 56665555
Q ss_pred HHhhccceecccCC
Q 047708 344 LLLRSEILALVDVN 357 (397)
Q Consensus 344 ~~~~L~~L~l~~c~ 357 (397)
+ ++|++|+|+++.
T Consensus 703 l-~~L~~L~ls~N~ 715 (768)
T 3rgz_A 703 L-TMLTEIDLSNNN 715 (768)
T ss_dssp C-CCCSEEECCSSE
T ss_pred C-CCCCEEECcCCc
Confidence 5 466666666643
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.5e-25 Score=221.87 Aligned_cols=208 Identities=14% Similarity=0.141 Sum_probs=115.9
Q ss_pred CCCcccEEEcCCCCC-CCCChhhcCcccCcEEEccCcc-CcC-CCc-cccCC------CCCCEEEccCCCCCccch--hh
Q 047708 137 GMKDLKVLDMGGIRG-FSLPSSLSFLINLRTLSLHDCR-RFG-DLP-LIGEL------SLLEILDLSKSDVSEIPI--SF 204 (397)
Q Consensus 137 ~l~~L~~L~l~~~~~-~~l~~~~~~l~~L~~L~l~~~~-~~~-~~~-~~~~l------~~L~~L~l~~~~~~~lp~--~i 204 (397)
++++|++|++++|.+ ..+|..++++++|++|++++|. +.+ ..| .++.+ ++|++|++++|.++.+|. .+
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l 326 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh
Confidence 455555555555544 4445555555555555555554 433 222 33333 555555555555555554 55
Q ss_pred hCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCC-CCEEEEeccCCCCC
Q 047708 205 GRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSR-LTSLHIHIPNGKIM 283 (397)
Q Consensus 205 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~ 283 (397)
+++++|++|++++|...+.+| . ++.+++|++|++++|.+. .++..+..+++ |++|++++|.+..+
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~------------~lp~~l~~l~~~L~~L~Ls~N~l~~l 392 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQIT------------EIPANFCGFTEQVENLSFAHNKLKYI 392 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEE------------ECCTTSEEECTTCCEEECCSSCCSSC
T ss_pred ccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccc------------cccHhhhhhcccCcEEEccCCcCccc
Confidence 555555555555532222444 2 455555555555555443 34566777888 99999999998888
Q ss_pred CCccc-C--CCccEEEEEecCcccchhhhHHHHhhh--hcccccccccceec-ccccccchHHHHHHHhhccceecccCC
Q 047708 284 SSDMS-F--QNLTSFSITIGDLAAGFISAAIEVFSR--KFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVN 357 (397)
Q Consensus 284 ~~~~~-~--~~L~~L~l~~~~~~~~~~~~~~~~l~~--~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~ 357 (397)
|..+. . ++|+.|+++.|........ .++. .......+|+.|++ ++.++.+|..+....++|++|++++ +
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~-N 467 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGK----NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG-N 467 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTC----SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS-S
T ss_pred chhhhhcccCccCEEECcCCcCCCcchh----hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC-C
Confidence 88766 3 4888998887765422111 1210 00002456777777 6667777776665335677777765 3
Q ss_pred Chhhhh
Q 047708 358 DLENIV 363 (397)
Q Consensus 358 ~l~~l~ 363 (397)
.++.++
T Consensus 468 ~l~~i~ 473 (636)
T 4eco_A 468 MLTEIP 473 (636)
T ss_dssp CCSBCC
T ss_pred CCCCcC
Confidence 344443
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2.3e-23 Score=198.91 Aligned_cols=278 Identities=19% Similarity=0.221 Sum_probs=151.9
Q ss_pred CCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhc
Q 047708 80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLS 159 (397)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~ 159 (397)
+..+..++....++++++|++++|.+..++...++++|+.|++++|.+..+++ +.++++|++|++++|.+..++. +.
T Consensus 55 ~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~ 131 (466)
T 1o6v_A 55 RLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LK 131 (466)
T ss_dssp SSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GT
T ss_pred CCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-Hc
Confidence 33455566666778888888888888877664478888888888888776665 6788888888888887766655 77
Q ss_pred CcccCcEEEccCccCcCCC--------------------ccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCC
Q 047708 160 FLINLRTLSLHDCRRFGDL--------------------PLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCD 219 (397)
Q Consensus 160 ~l~~L~~L~l~~~~~~~~~--------------------~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~ 219 (397)
.+++|++|++++|.+.... +.+..+++|++|++++|.+..++ .+..+++|++|++++|
T Consensus 132 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n- 209 (466)
T 1o6v_A 132 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNN- 209 (466)
T ss_dssp TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-
T ss_pred CCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCC-
Confidence 7788888888777654321 12344455555555555555443 2455555555555552
Q ss_pred CCCCCchhhhcCCCCCCEEEeecccccccccCC----------CccCccccccccCCCCCCCEEEEeccCCCCCCCccc-
Q 047708 220 DLELIPRGVLSRLRKLEELYMSRSFHHWQFEGE----------EDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS- 288 (397)
Q Consensus 220 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~- 288 (397)
.+..+++ ++.+++|++|++++|.+.+. +.. .....-.....+..+++|++|++++|.+..++. +.
T Consensus 210 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~ 285 (466)
T 1o6v_A 210 QISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAG 285 (466)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTT
T ss_pred ccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccC
Confidence 3333332 34455555555555544321 000 000000001113344444455554444444433 33
Q ss_pred CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccc
Q 047708 289 FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLA 367 (397)
Q Consensus 289 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 367 (397)
+++|+.|+++.|..... ..+.. +++|+.|++ ++.+..++. +..+ ++|++|++++| .+..++ .
T Consensus 286 l~~L~~L~L~~n~l~~~------~~~~~-----l~~L~~L~L~~n~l~~~~~-~~~l-~~L~~L~l~~n-~l~~~~---~ 348 (466)
T 1o6v_A 286 LTALTNLELNENQLEDI------SPISN-----LKNLTYLTLYFNNISDISP-VSSL-TKLQRLFFYNN-KVSDVS---S 348 (466)
T ss_dssp CTTCSEEECCSSCCSCC------GGGGG-----CTTCSEEECCSSCCSCCGG-GGGC-TTCCEEECCSS-CCCCCG---G
T ss_pred CCccCeEEcCCCcccCc------hhhcC-----CCCCCEEECcCCcCCCchh-hccC-ccCCEeECCCC-ccCCch---h
Confidence 45555555554432211 01222 555666666 444544443 3333 46666666654 444443 2
Q ss_pred cCCCCCccEEEEeccC
Q 047708 368 NDGFNELMFLGIFGCN 383 (397)
Q Consensus 368 ~~~~~~L~~L~i~~c~ 383 (397)
...+++|+.|++++|+
T Consensus 349 l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQ 364 (466)
T ss_dssp GTTCTTCCEEECCSSC
T ss_pred hccCCCCCEEeCCCCc
Confidence 3466777777777664
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=3.8e-25 Score=218.92 Aligned_cols=286 Identities=17% Similarity=0.163 Sum_probs=206.8
Q ss_pred ccccCceEEccCCCccc-CCCcC-CCCCccEEEccCCC-Ccc--cChhhhcCC------CcccEEEcCCCCCCCCCh--h
Q 047708 91 KFEDLTGISLMFNDIHE-VPDEL-ECPKLQALLLQENS-LLV--IPDRFFQGM------KDLKVLDMGGIRGFSLPS--S 157 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~-~~~~~-~~~~L~~L~l~~~~-~~~--~~~~~~~~l------~~L~~L~l~~~~~~~l~~--~ 157 (397)
.+++|++|++++|.+.+ +|..+ ++++|+.|++++|. +.. +|..+ +.+ ++|++|++++|.+..+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLKTFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCCccCchhh
Confidence 78999999999998776 77766 89999999999998 764 66654 544 999999999999999998 8
Q ss_pred hcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCC-CCeeecCCCCCCCCCchhhhcCCC--C
Q 047708 158 LSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSH-LRLLDLTDCDDLELIPRGVLSRLR--K 234 (397)
Q Consensus 158 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~l~--~ 234 (397)
++.+++|++|++++|.+.+.+|.++.+++|++|++++|.++.+|..++.+++ |++|++++ +.++.+|.. ++.++ +
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~-N~l~~lp~~-~~~~~l~~ 403 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH-NKLKYIPNI-FDAKSVSV 403 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS-SCCSSCCSC-CCTTCSSC
T ss_pred hccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC-CcCcccchh-hhhcccCc
Confidence 9999999999999999985555888999999999999998899999999999 99999999 456688875 55544 8
Q ss_pred CCEEEeecccccccccCCCc-------------------cCccccccc-cCCCCCCCEEEEeccCCCCCCCccc--CC--
Q 047708 235 LEELYMSRSFHHWQFEGEED-------------------SSSNAKFIE-LGSLSRLTSLHIHIPNGKIMSSDMS--FQ-- 290 (397)
Q Consensus 235 L~~L~l~~~~~~~~~~~~~~-------------------~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~--~~-- 290 (397)
|++|++++|.+.+.+|.... .....++.. +..+++|++|++++|.+..+|.... ..
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence 99999999988875543211 001112221 2235667777777776666665533 22
Q ss_pred -----CccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccceecccCC------C
Q 047708 291 -----NLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVN------D 358 (397)
Q Consensus 291 -----~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~------~ 358 (397)
+|+.|+++.|... .+ + ..+.. ..+++|+.|++ ++.++.+|.++..+ ++|++|+|+++. -
T Consensus 484 ~~~l~~L~~L~Ls~N~l~-~l-p---~~~~~---~~l~~L~~L~Ls~N~l~~ip~~~~~l-~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLT-KL-S---DDFRA---TTLPYLVGIDLSYNSFSKFPTQPLNS-STLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp CTTGGGCCEEECCSSCCC-BC-C---GGGST---TTCTTCCEEECCSSCCSSCCCGGGGC-SSCCEEECCSCBCTTCCBC
T ss_pred ccccCCccEEECcCCcCC-cc-C---hhhhh---ccCCCcCEEECCCCCCCCcChhhhcC-CCCCEEECCCCcccccCcc
Confidence 6777777666543 11 1 11210 13677888888 66777777777766 588888885422 2
Q ss_pred hhhhhhccccCCCCCccEEEEeccCCceEeecC
Q 047708 359 LENIVSDLANDGFNELMFLGIFGCNEMKCLLNS 391 (397)
Q Consensus 359 l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~~~ 391 (397)
...++.. .+.+++|++|++++|. ++.+|..
T Consensus 555 ~~~~p~~--l~~l~~L~~L~Ls~N~-l~~ip~~ 584 (636)
T 4eco_A 555 LREWPEG--ITLCPSLTQLQIGSND-IRKVNEK 584 (636)
T ss_dssp CCCCCTT--GGGCSSCCEEECCSSC-CCBCCSC
T ss_pred cccChHH--HhcCCCCCEEECCCCc-CCccCHh
Confidence 2333322 3468888888888885 4777765
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.1e-24 Score=219.86 Aligned_cols=276 Identities=13% Similarity=0.114 Sum_probs=191.2
Q ss_pred ccccccCceEEccCCCccc------------------CCCcC---CCCCccEEEccCCC-CcccChhhhcCCCcccEEEc
Q 047708 89 INKFEDLTGISLMFNDIHE------------------VPDEL---ECPKLQALLLQENS-LLVIPDRFFQGMKDLKVLDM 146 (397)
Q Consensus 89 ~~~~~~l~~l~l~~~~~~~------------------~~~~~---~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l 146 (397)
+..+++|+.|++++|.+.+ +|..+ ++++|+.|++++|. ...+|.. +.++++|++|++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEEC
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEEC
Confidence 4567888888888888887 77765 57888888888887 5556644 588888888888
Q ss_pred CCCC-CC--CCChhhcCcc-------cCcEEEccCccCcCCCc--cccCCCCCCEEEccCCCCCccchhhhCCCCCCeee
Q 047708 147 GGIR-GF--SLPSSLSFLI-------NLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLD 214 (397)
Q Consensus 147 ~~~~-~~--~l~~~~~~l~-------~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 214 (397)
++|. +. .+|..++.+. +|++|++++|.+...++ .++.+++|++|++++|.++.+| .++.+++|++|+
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLK 601 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEE
Confidence 8887 64 4777777666 88888888888875555 5888888888888888888777 778888888888
Q ss_pred cCCCCCCCCCchhhhcCCCC-CCEEEeecccccccccCCCccC--------------c----cccccccC--CCCCCCEE
Q 047708 215 LTDCDDLELIPRGVLSRLRK-LEELYMSRSFHHWQFEGEEDSS--------------S----NAKFIELG--SLSRLTSL 273 (397)
Q Consensus 215 l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~--------------~----~~~~~~l~--~l~~L~~L 273 (397)
+++ +.+..+|.. +..+++ |++|++++|.+. .+|...... . ..+...+. .+++|+.|
T Consensus 602 Ls~-N~l~~lp~~-l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 602 LDY-NQIEEIPED-FCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp CCS-SCCSCCCTT-SCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred CcC-CccccchHH-HhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence 888 445577766 777777 888888888776 444321100 0 01111122 23477788
Q ss_pred EEeccCCCCCCCccc--CCCccEEEEEecCcccchhhhHHHHhhhhccc-------ccccccceec-ccccccchHHHH-
Q 047708 274 HIHIPNGKIMSSDMS--FQNLTSFSITIGDLAAGFISAAIEVFSRKFKK-------RCSRAMGLSQ-DMRISGVHSWIK- 342 (397)
Q Consensus 274 ~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~-------~~~~L~~L~l-~~~~~~lp~~~~- 342 (397)
++++|.+..+|..+. +++|+.|+++.|... . ++...+. .+++|+.|++ ++.++.+|..+.
T Consensus 679 ~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~--------ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~ 749 (876)
T 4ecn_A 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMT-S--------IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749 (876)
T ss_dssp ECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-C--------CCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred EccCCcCCccCHHHHccCCCCCEEECCCCcCC-c--------cChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence 888888777776653 778888888776543 1 1111111 1337888888 777778887776
Q ss_pred -HHHhhccceecccCCChhhhhhccccCCCCCccEEEEecc
Q 047708 343 -NLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGC 382 (397)
Q Consensus 343 -~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c 382 (397)
.+ ++|+.|+|++ +.+..++..+ +.+++|+.|++++|
T Consensus 750 ~~l-~~L~~L~Ls~-N~L~~lp~~l--~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 750 TTL-PYLSNMDVSY-NCFSSFPTQP--LNSSQLKAFGIRHQ 786 (876)
T ss_dssp TTC-TTCCEEECCS-SCCSSCCCGG--GGCTTCCEEECCCC
T ss_pred ccC-CCcCEEEeCC-CCCCccchhh--hcCCCCCEEECCCC
Confidence 55 6888888887 4566655333 47888888888763
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.7e-23 Score=202.79 Aligned_cols=140 Identities=14% Similarity=0.067 Sum_probs=80.5
Q ss_pred cCCCCCCEEEeecccccccccCCCc------------cCcc---ccccccCCCCCCCEEEEeccCCCC-CCCc-cc-CCC
Q 047708 230 SRLRKLEELYMSRSFHHWQFEGEED------------SSSN---AKFIELGSLSRLTSLHIHIPNGKI-MSSD-MS-FQN 291 (397)
Q Consensus 230 ~~l~~L~~L~l~~~~~~~~~~~~~~------------~~~~---~~~~~l~~l~~L~~L~l~~~~~~~-~~~~-~~-~~~ 291 (397)
+.+++|++|++++|.+.+.+|.... .... .++..++.+++|++|++++|.+.. +|.. +. +++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 4566777777777777663332100 0000 122335556666666666666544 5543 33 566
Q ss_pred ccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCC
Q 047708 292 LTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDG 370 (397)
Q Consensus 292 L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 370 (397)
|+.|+++.|........ ..+++|+.|++ ++.++.+|.++..+ ++|++|++++ +.++.++.. ....
T Consensus 401 L~~L~Ls~N~l~~~~~~-----------~l~~~L~~L~Ls~N~l~~ip~~~~~l-~~L~~L~L~~-N~l~~l~~~-~~~~ 466 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFR-----------CLPPRIKVLDLHSNKIKSIPKQVVKL-EALQELNVAS-NQLKSVPDG-IFDR 466 (520)
T ss_dssp CCEEECCSSCCCGGGGG-----------SCCTTCCEEECCSSCCCCCCGGGGGC-TTCCEEECCS-SCCCCCCTT-TTTT
T ss_pred CCEEECcCCCCCcchhh-----------hhcccCCEEECCCCcccccchhhhcC-CCCCEEECCC-CcCCccCHH-Hhcc
Confidence 66666665543321111 11257777777 66777788777655 5888888887 456666533 2346
Q ss_pred CCCccEEEEeccC
Q 047708 371 FNELMFLGIFGCN 383 (397)
Q Consensus 371 ~~~L~~L~i~~c~ 383 (397)
+++|++|++++|+
T Consensus 467 l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 467 LTSLQKIWLHTNP 479 (520)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCcccEEECcCCC
Confidence 7788888887775
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=4.1e-24 Score=194.41 Aligned_cols=219 Identities=18% Similarity=0.152 Sum_probs=127.6
Q ss_pred CCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEcc
Q 047708 114 CPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLS 193 (397)
Q Consensus 114 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 193 (397)
.++++.|++++|.+..+|..+ ..+++|++|++++|.+..+|..++.+++|++|++++|.+...++.++.+++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 356666666666666666553 4466666666666666666666666666666666666665444466666666666666
Q ss_pred CCCC-CccchhhhC---------CCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccc
Q 047708 194 KSDV-SEIPISFGR---------LSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIE 263 (397)
Q Consensus 194 ~~~~-~~lp~~i~~---------l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 263 (397)
+|.. ..+|..++. +++|++|++++ +.++.+|.. ++.+++|++|++++|.+.+ ++..
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~lp~~-l~~l~~L~~L~L~~N~l~~------------l~~~ 224 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEW-TGIRSLPAS-IANLQNLKSLKIRNSPLSA------------LGPA 224 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE-ECCCCCCGG-GGGCTTCCEEEEESSCCCC------------CCGG
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcC-CCcCcchHh-hcCCCCCCEEEccCCCCCc------------Cchh
Confidence 6533 355554443 66666666666 344455554 5666666666666666553 2334
Q ss_pred cCCCCCCCEEEEeccC-CCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceecccccccchHHH
Q 047708 264 LGSLSRLTSLHIHIPN-GKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWI 341 (397)
Q Consensus 264 l~~l~~L~~L~l~~~~-~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~lp~~~ 341 (397)
++.+++|++|++++|. .+.+|..+. +++|+.|+++.|... +.+|.++
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-------------------------------~~~p~~~ 273 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL-------------------------------LTLPLDI 273 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC-------------------------------CBCCTTG
T ss_pred hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch-------------------------------hhcchhh
Confidence 5556666666666654 445555555 666666665554433 3344444
Q ss_pred HHHHhhccceecccCCChhhhhhccccCCCCCccEEEEec
Q 047708 342 KNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFG 381 (397)
Q Consensus 342 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~ 381 (397)
..+ ++|++|+|++|..+..+|..+ +.+++|+.+.+..
T Consensus 274 ~~l-~~L~~L~L~~n~~~~~iP~~l--~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 274 HRL-TQLEKLDLRGCVNLSRLPSLI--AQLPANCIILVPP 310 (328)
T ss_dssp GGC-TTCCEEECTTCTTCCCCCGGG--GGSCTTCEEECCG
T ss_pred hcC-CCCCEEeCCCCCchhhccHHH--hhccCceEEeCCH
Confidence 444 466666666666666555433 3566666665543
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=5.5e-23 Score=202.91 Aligned_cols=290 Identities=17% Similarity=0.114 Sum_probs=195.7
Q ss_pred CCccCCCCCccccccCceEEccCCCcccCC-CcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-Ch
Q 047708 80 GVELKDWPSINKFEDLTGISLMFNDIHEVP-DEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PS 156 (397)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~ 156 (397)
+..+..+|.. -.+++++|++++|.++.++ ..+ ++++|++|++++|.+..+.+..|.++++|++|++++|.+..+ |.
T Consensus 21 ~~~l~~iP~~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 99 (606)
T 3t6q_A 21 NLGLNEIPGT-LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET 99 (606)
T ss_dssp TSCCSSCCTT-SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT
T ss_pred CCCcccCcCC-CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh
Confidence 4445555543 2457899999999998864 344 889999999999997777766788999999999999988554 67
Q ss_pred hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCCCC
Q 047708 157 SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRK 234 (397)
Q Consensus 157 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 234 (397)
.++++++|++|++++|.+....+ .++.+++|++|++++|.+..++ ..+..+++|++|++++ +.++.+++..++.+++
T Consensus 100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQQ 178 (606)
T ss_dssp TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTTT
T ss_pred hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhhcc
Confidence 88899999999999998877644 7888999999999999888652 3444588999999988 5666666555888888
Q ss_pred CC--EEEeecccccccccCCCcc---------------------------------------------------------
Q 047708 235 LE--ELYMSRSFHHWQFEGEEDS--------------------------------------------------------- 255 (397)
Q Consensus 235 L~--~L~l~~~~~~~~~~~~~~~--------------------------------------------------------- 255 (397)
|+ +|++++|.+.+..+.....
T Consensus 179 L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~ 258 (606)
T 3t6q_A 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258 (606)
T ss_dssp CCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred cceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence 88 8888888776644322110
Q ss_pred -------CccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccc
Q 047708 256 -------SSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMG 327 (397)
Q Consensus 256 -------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~ 327 (397)
........++.+++|++|++++|.+..+|..+. +++|++|+++.|...... + ..+.. +++|+.
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~-~---~~~~~-----l~~L~~ 329 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-Q---ISASN-----FPSLTH 329 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG-G---GCGGG-----CTTCSE
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc-h---hhhhc-----cCcCCE
Confidence 000112236778899999999999889998888 899999999877644221 1 12222 556666
Q ss_pred eec-ccccc-cchHH-HHHHHhhccceecccCCChhhhhh-ccccCCCCCccEEEEecc
Q 047708 328 LSQ-DMRIS-GVHSW-IKNLLLRSEILALVDVNDLENIVS-DLANDGFNELMFLGIFGC 382 (397)
Q Consensus 328 L~l-~~~~~-~lp~~-~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L~~L~i~~c 382 (397)
|++ ++.+. .+|.. +..+ ++|++|+++++ .+..... ....+.+++|++|++++|
T Consensus 330 L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENL-ENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTC-TTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred EECCCCCcccccchhhhhcc-CcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCC
Confidence 666 33322 33322 3333 46666666653 2322210 112234555555555554
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=5.7e-23 Score=202.82 Aligned_cols=146 Identities=24% Similarity=0.286 Sum_probs=120.3
Q ss_pred ecCCccCCCCCccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-
Q 047708 78 KAGVELKDWPSINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL- 154 (397)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l- 154 (397)
..+..+..+|.. -.+++++|++++|.+..++. .+ ++++|++|++++|.+..+++..|.++++|++|++++|.+..+
T Consensus 18 c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 18 CMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96 (606)
T ss_dssp CTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC
T ss_pred ccCCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC
Confidence 445556666664 34789999999999988665 33 889999999999998888777789999999999999998666
Q ss_pred ChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCC--ccchhhhCCCCCCeeecCCCCCCCCCc
Q 047708 155 PSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS--EIPISFGRLSHLRLLDLTDCDDLELIP 225 (397)
Q Consensus 155 ~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~ 225 (397)
|..++++++|++|++++|.+...++ .++.+++|++|++++|.+. .+|..++++++|++|++++| .++.++
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~ 169 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTIT 169 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEEC
T ss_pred hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecC
Confidence 7789999999999999999877775 7899999999999999887 57889999999999999984 444443
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=3e-24 Score=216.74 Aligned_cols=287 Identities=17% Similarity=0.146 Sum_probs=224.5
Q ss_pred ccccCceEEccCCCccc-CCCcC-CCCCccEEEccCCC-Ccc--cChhh------hcCCCcccEEEcCCCCCCCCCh--h
Q 047708 91 KFEDLTGISLMFNDIHE-VPDEL-ECPKLQALLLQENS-LLV--IPDRF------FQGMKDLKVLDMGGIRGFSLPS--S 157 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~-~~~~~-~~~~L~~L~l~~~~-~~~--~~~~~------~~~l~~L~~L~l~~~~~~~l~~--~ 157 (397)
.+++|+.|++++|.+.. +|..+ ++++|+.|++++|. +.. +|..+ +..+++|++|++++|.+..+|. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 78999999999998766 77666 89999999999998 664 66543 2345599999999999999998 9
Q ss_pred hcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCC-CCeeecCCCCCCCCCchhhhcCCC--C
Q 047708 158 LSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSH-LRLLDLTDCDDLELIPRGVLSRLR--K 234 (397)
Q Consensus 158 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~l~--~ 234 (397)
++++++|++|++++|.+. .+|.++.+++|+.|++++|.+..+|..+..+++ |++|++++ +.++.+|.. ++.++ +
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~-N~L~~lp~~-~~~~~~~~ 645 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH-NKLKYIPNI-FNAKSVYV 645 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS-SCCCSCCSC-CCTTCSSC
T ss_pred hhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC-CCCCcCchh-hhccccCC
Confidence 999999999999999987 555999999999999999999999999999999 99999999 456688865 66554 4
Q ss_pred CCEEEeecccccccccCCC-----------------ccCcccccccc-CCCCCCCEEEEeccCCCCCCCccc-C------
Q 047708 235 LEELYMSRSFHHWQFEGEE-----------------DSSSNAKFIEL-GSLSRLTSLHIHIPNGKIMSSDMS-F------ 289 (397)
Q Consensus 235 L~~L~l~~~~~~~~~~~~~-----------------~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~-~------ 289 (397)
|+.|++++|.+.+.+|... ......++..+ ..+++|+.|++++|.+..+|..+. .
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~ 725 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCT
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccc
Confidence 9999999998877654221 11111233333 368999999999999888887754 2
Q ss_pred --CCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccceecccCC------Chh
Q 047708 290 --QNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVN------DLE 360 (397)
Q Consensus 290 --~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~------~l~ 360 (397)
++|+.|+++.|... .. + ..+.. ..+++|+.|++ ++.+..+|..+..+ ++|+.|+|+++. -..
T Consensus 726 nl~~L~~L~Ls~N~L~-~l-p---~~l~~---~~l~~L~~L~Ls~N~L~~lp~~l~~L-~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKLT-SL-S---DDFRA---TTLPYLSNMDVSYNCFSSFPTQPLNS-SQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp TGGGCCEEECCSSCCC-CC-C---GGGST---TTCTTCCEEECCSSCCSSCCCGGGGC-TTCCEEECCCCBCTTCCBCCC
T ss_pred ccCCccEEECCCCCCc-cc-h---HHhhh---ccCCCcCEEEeCCCCCCccchhhhcC-CCCCEEECCCCCCcccccccc
Confidence 29999999988654 21 1 12220 23789999999 88888899888877 699999998733 233
Q ss_pred hhhhccccCCCCCccEEEEeccCCceEeecCC
Q 047708 361 NIVSDLANDGFNELMFLGIFGCNEMKCLLNSL 392 (397)
Q Consensus 361 ~l~~~~~~~~~~~L~~L~i~~c~~L~~i~~~~ 392 (397)
.++.. .+.+++|+.|++++|. +..+|...
T Consensus 797 ~ip~~--l~~L~~L~~L~Ls~N~-L~~Ip~~l 825 (876)
T 4ecn_A 797 QWPTG--ITTCPSLIQLQIGSND-IRKVDEKL 825 (876)
T ss_dssp CCCTT--GGGCSSCCEEECCSSC-CCBCCSCC
T ss_pred cChHH--HhcCCCCCEEECCCCC-CCccCHhh
Confidence 33422 3479999999999995 58888763
No 21
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.6e-23 Score=198.88 Aligned_cols=244 Identities=15% Similarity=0.116 Sum_probs=125.9
Q ss_pred cCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcc
Q 047708 83 LKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLI 162 (397)
Q Consensus 83 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~ 162 (397)
+...+....++++++|++++|.+.+++ ...+++|+.|++++|.+..++ ++.+++|++|++++|.+..+| ++.++
T Consensus 54 l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~ 127 (457)
T 3bz5_A 54 ITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNP 127 (457)
T ss_dssp CCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred cccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCeec--CCCCC
Confidence 333344444555555555555555543 224555555555555544443 345555555555555554443 45555
Q ss_pred cCcEEEccCccCcCCCccccCCCCCCEEEccCC-CCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEee
Q 047708 163 NLRTLSLHDCRRFGDLPLIGELSLLEILDLSKS-DVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMS 241 (397)
Q Consensus 163 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 241 (397)
+|++|++++|.+... .++.+++|++|++++| .+..+ .++.+++|++|++++ +.++.+| ++.+++|+.|+++
T Consensus 128 ~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~-n~l~~l~---l~~l~~L~~L~l~ 199 (457)
T 3bz5_A 128 LLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF-NKITELD---VSQNKLLNRLNCD 199 (457)
T ss_dssp TCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS-SCCCCCC---CTTCTTCCEEECC
T ss_pred cCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC-Cccceec---cccCCCCCEEECc
Confidence 555555555554432 2445555555555555 23333 244555555555555 3344444 4455555566555
Q ss_pred cccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhh--c
Q 047708 242 RSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRK--F 318 (397)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~--~ 318 (397)
+|.+.+ + .++.+++|+.|++++|++..+| +. +++|+.|+++.|......+ ..++.. .
T Consensus 200 ~N~l~~------------~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~----~~l~~L~~L 259 (457)
T 3bz5_A 200 TNNITK------------L--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDV----STLSKLTTL 259 (457)
T ss_dssp SSCCSC------------C--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCC----TTCTTCCEE
T ss_pred CCcCCe------------e--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCH----HHCCCCCEE
Confidence 555543 1 3666777888888887776666 55 7778888877765432211 111110 0
Q ss_pred ccccccccceec--ccccccchHHHHHHHhhccceecccCCChhhhh
Q 047708 319 KKRCSRAMGLSQ--DMRISGVHSWIKNLLLRSEILALVDVNDLENIV 363 (397)
Q Consensus 319 ~~~~~~L~~L~l--~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~ 363 (397)
.....+++.|++ +...+.+|. ..+ ++|+.|++++|..+..++
T Consensus 260 ~l~~n~L~~L~l~~n~~~~~~~~--~~l-~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 260 HCIQTDLLEIDLTHNTQLIYFQA--EGC-RKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCEEEC--TTC-TTCCCCCCTTCTTCCEEE
T ss_pred eccCCCCCEEECCCCccCCcccc--ccc-ccCCEEECCCCcccceec
Confidence 001113445555 222344552 223 577888888777665554
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=7.8e-23 Score=195.26 Aligned_cols=282 Identities=19% Similarity=0.240 Sum_probs=173.2
Q ss_pred CCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh---
Q 047708 80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS--- 156 (397)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~--- 156 (397)
++.+..++....+++|+.|++++|.+..++...++++|+.|++++|.+..++. +..+++|++|++++|.+..++.
T Consensus 77 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~ 154 (466)
T 1o6v_A 77 NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG 154 (466)
T ss_dssp SSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTT
T ss_pred CCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhcc
Confidence 34444444455667777777777776665554466777777777766555554 4566666666666555433221
Q ss_pred -----------------hhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCC
Q 047708 157 -----------------SLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCD 219 (397)
Q Consensus 157 -----------------~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~ 219 (397)
.+.++++|++|++++|.+.. .+.+..+++|++|++++|.+..++. ++.+++|++|++++ +
T Consensus 155 l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-n 231 (466)
T 1o6v_A 155 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNG-N 231 (466)
T ss_dssp CTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCS-S
T ss_pred CCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-ChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCC-C
Confidence 24455566666666665432 2345556666666666665554433 44555555555555 2
Q ss_pred CCCCCchhhhcCCCCCCEEEeecccccccccCC----------CccCccccccccCCCCCCCEEEEeccCCCCCCCccc-
Q 047708 220 DLELIPRGVLSRLRKLEELYMSRSFHHWQFEGE----------EDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS- 288 (397)
Q Consensus 220 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~- 288 (397)
.++.++. +..+++|++|++++|.+.+..+.. .+..... ...+..+++|+.|++++|.+..++. +.
T Consensus 232 ~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~ 307 (466)
T 1o6v_A 232 QLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISP-ISN 307 (466)
T ss_dssp CCCCCGG--GGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCSCCGG-GGG
T ss_pred Ccccchh--hhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCc-cccccCCCccCeEEcCCCcccCchh-hcC
Confidence 3333332 444555555555554443322210 0000001 2237789999999999999888776 56
Q ss_pred CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccc
Q 047708 289 FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLA 367 (397)
Q Consensus 289 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 367 (397)
+++|+.|+++.|...... .+.. +++|+.|++ ++.+..++ .+..+ ++|++|++++| .+..++ .
T Consensus 308 l~~L~~L~L~~n~l~~~~------~~~~-----l~~L~~L~l~~n~l~~~~-~l~~l-~~L~~L~l~~n-~l~~~~---~ 370 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDIS------PVSS-----LTKLQRLFFYNNKVSDVS-SLANL-TNINWLSAGHN-QISDLT---P 370 (466)
T ss_dssp CTTCSEEECCSSCCSCCG------GGGG-----CTTCCEEECCSSCCCCCG-GGTTC-TTCCEEECCSS-CCCBCG---G
T ss_pred CCCCCEEECcCCcCCCch------hhcc-----CccCCEeECCCCccCCch-hhccC-CCCCEEeCCCC-ccCccc---h
Confidence 999999999988754321 1333 889999999 77777775 45555 69999999985 466554 2
Q ss_pred cCCCCCccEEEEeccCCceEe
Q 047708 368 NDGFNELMFLGIFGCNEMKCL 388 (397)
Q Consensus 368 ~~~~~~L~~L~i~~c~~L~~i 388 (397)
...+++|+.|++++|+ +..+
T Consensus 371 ~~~l~~L~~L~l~~n~-~~~~ 390 (466)
T 1o6v_A 371 LANLTRITQLGLNDQA-WTNA 390 (466)
T ss_dssp GTTCTTCCEEECCCEE-EECC
T ss_pred hhcCCCCCEEeccCCc-ccCC
Confidence 5689999999999984 4443
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=6.2e-23 Score=187.08 Aligned_cols=262 Identities=17% Similarity=0.184 Sum_probs=136.2
Q ss_pred cCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCc
Q 047708 94 DLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDC 172 (397)
Q Consensus 94 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~ 172 (397)
+++.++++++.+..+|... .+.++.|++++|.+..++...|.++++|++|++++|.+..+ |..++.+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 4556666666555555433 24566666666665555554456666666666666666444 555666666666666666
Q ss_pred cCcCCCccccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCC-CCchhhhcCCCCCCEEEeeccccccccc
Q 047708 173 RRFGDLPLIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLE-LIPRGVLSRLRKLEELYMSRSFHHWQFE 250 (397)
Q Consensus 173 ~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 250 (397)
.+...+..+. ++|++|++++|.++.++. .+..+++|++|++++|.... ......++.+++|++|++++|.+..
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--- 185 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--- 185 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS---
T ss_pred cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc---
Confidence 6544433332 566666666666664443 45566666666666632211 1222225566666666666665542
Q ss_pred CCCccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccce
Q 047708 251 GEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGL 328 (397)
Q Consensus 251 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L 328 (397)
++..+ .++|++|++++|.+..+ +..+. +++|+.|+++.|....... ..+.. +++|+.|
T Consensus 186 ---------l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~-----l~~L~~L 245 (330)
T 1xku_A 186 ---------IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN----GSLAN-----TPHLREL 245 (330)
T ss_dssp ---------CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT----TTGGG-----STTCCEE
T ss_pred ---------CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh----hhccC-----CCCCCEE
Confidence 11111 14566666666654444 23344 5666666665554322110 12222 5556666
Q ss_pred ec-ccccccchHHHHHHHhhccceecccCCChhhhhhcccc-----CCCCCccEEEEeccC
Q 047708 329 SQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLAN-----DGFNELMFLGIFGCN 383 (397)
Q Consensus 329 ~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~-----~~~~~L~~L~i~~c~ 383 (397)
++ ++.+..+|.++..+ ++|++|++++ +.++.++..... ..++.|+.|++.++|
T Consensus 246 ~L~~N~l~~lp~~l~~l-~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 246 HLNNNKLVKVPGGLADH-KYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp ECCSSCCSSCCTTTTTC-SSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ECCCCcCccCChhhccC-CCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCc
Confidence 66 55555566555544 4666666665 334444321111 123556666666655
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=7e-23 Score=186.74 Aligned_cols=274 Identities=16% Similarity=0.149 Sum_probs=209.2
Q ss_pred CCccCCCCCccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh
Q 047708 80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS 157 (397)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~ 157 (397)
+..+..+|.. ..++++.|++++|.+..++.. + ++++|++|++++|.+..+.+..|..+++|++|++++|.+..+|..
T Consensus 40 ~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~ 118 (330)
T 1xku_A 40 DLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 118 (330)
T ss_dssp TSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS
T ss_pred CCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh
Confidence 3345555543 347899999999999997663 3 899999999999998888666689999999999999999888876
Q ss_pred hcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCC---ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCC
Q 047708 158 LSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS---EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLR 233 (397)
Q Consensus 158 ~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~---~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 233 (397)
+. ++|++|++++|.+...++ .+..+++|++|++++|.+. ..+..+..+++|++|++++ +.++.+|.. + .+
T Consensus 119 ~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~~-~--~~ 192 (330)
T 1xku_A 119 MP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITTIPQG-L--PP 192 (330)
T ss_dssp CC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCSCCSS-C--CT
T ss_pred hc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC-CccccCCcc-c--cc
Confidence 65 799999999999877776 6899999999999999886 4567888999999999999 667778765 2 37
Q ss_pred CCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCC-ccc-CCCccEEEEEecCcccchhhhHH
Q 047708 234 KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSS-DMS-FQNLTSFSITIGDLAAGFISAAI 311 (397)
Q Consensus 234 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~~~L~~L~l~~~~~~~~~~~~~~ 311 (397)
+|++|++++|.+.+ ..+..+..+++|++|++++|.+..++. .+. +++|+.|+++.|... . ++
T Consensus 193 ~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~-lp--- 256 (330)
T 1xku_A 193 SLTELHLDGNKITK-----------VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K-VP--- 256 (330)
T ss_dssp TCSEEECTTSCCCE-----------ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-S-CC---
T ss_pred cCCEEECCCCcCCc-----------cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-c-CC---
Confidence 89999999998876 235678889999999999999776665 566 899999999988654 1 11
Q ss_pred HHhhhhcccccccccceec-ccccccchHHHHHH------HhhccceecccCCChhhhh-hccccCCCCCccEEEEecc
Q 047708 312 EVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNL------LLRSEILALVDVNDLENIV-SDLANDGFNELMFLGIFGC 382 (397)
Q Consensus 312 ~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~------~~~L~~L~l~~c~~l~~l~-~~~~~~~~~~L~~L~i~~c 382 (397)
..+.. +++|+.|++ ++.++.+|...... ..+|+.|++.+++ +..+. ......++++|+.++++++
T Consensus 257 ~~l~~-----l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 257 GGLAD-----HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTTTT-----CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred hhhcc-----CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence 23333 788999999 77787776433211 1478899999855 33321 1123356788999998876
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=1.7e-23 Score=206.66 Aligned_cols=196 Identities=20% Similarity=0.191 Sum_probs=95.2
Q ss_pred cCceEEccCCCcccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEcc
Q 047708 94 DLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLH 170 (397)
Q Consensus 94 ~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~ 170 (397)
+++.+++.++.+..++... .+++|+.|++++|.+..+|.. +..+++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 4555555555555544332 455555555555555555543 35555555555555555433 3345555555555555
Q ss_pred CccCcCCCc--cccCCCCCCEEEccCCCCCcc---chhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccc
Q 047708 171 DCRRFGDLP--LIGELSLLEILDLSKSDVSEI---PISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFH 245 (397)
Q Consensus 171 ~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 245 (397)
+|.+....+ .+..+++|++|++++|.+..+ |..++.+++|++|++++| .+..+++..++.+++|++|++++|.+
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcC
Confidence 555443222 355555555555555555533 344555555555555552 22333222355555555555555554
Q ss_pred cccccCCCccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEecC
Q 047708 246 HWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGD 301 (397)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~ 301 (397)
.+..+ ...+..+++|++|++++|..... |..+. +++|+.|+++.|.
T Consensus 413 ~~~~~----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 413 KVKDA----------QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp ECCTT----------CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred CCccc----------chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 43110 11234444555555555543222 22333 4555555554443
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=4.6e-23 Score=201.58 Aligned_cols=140 Identities=10% Similarity=0.082 Sum_probs=81.3
Q ss_pred cCCCCCCEEEeecccccccccCCC------------ccCc---cccccccCCCCCCCEEEEeccCCCC-CCCc-cc-CCC
Q 047708 230 SRLRKLEELYMSRSFHHWQFEGEE------------DSSS---NAKFIELGSLSRLTSLHIHIPNGKI-MSSD-MS-FQN 291 (397)
Q Consensus 230 ~~l~~L~~L~l~~~~~~~~~~~~~------------~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~-~~-~~~ 291 (397)
+.+++|++|++++|.+.+.+|... +... ...+..++.+++|++|++++|.+.. +|.. +. +++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 455666777777666665332110 0000 0122345566666666666666544 5544 33 666
Q ss_pred ccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCC
Q 047708 292 LTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDG 370 (397)
Q Consensus 292 L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 370 (397)
|+.|+++.|........ .-+++|+.|++ ++.++.+|.++..+ ++|++|++++ +.++.++.. ....
T Consensus 430 L~~L~l~~n~l~~~~~~-----------~l~~~L~~L~L~~N~l~~ip~~~~~l-~~L~~L~L~~-N~l~~l~~~-~~~~ 495 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFR-----------CLPPKVKVLDLHNNRIMSIPKDVTHL-QALQELNVAS-NQLKSVPDG-VFDR 495 (562)
T ss_dssp CCEEECCSSCCCGGGGS-----------SCCTTCSEEECCSSCCCCCCTTTTSS-CCCSEEECCS-SCCCCCCTT-STTT
T ss_pred CCEEECCCCCCCcchhh-----------hhcCcCCEEECCCCcCcccChhhcCC-CCCCEEECCC-CCCCCCCHH-HHhc
Confidence 66666666554321111 01157888888 67777788777755 5888888887 566666533 2357
Q ss_pred CCCccEEEEeccC
Q 047708 371 FNELMFLGIFGCN 383 (397)
Q Consensus 371 ~~~L~~L~i~~c~ 383 (397)
+++|+.|+++++|
T Consensus 496 l~~L~~L~l~~N~ 508 (562)
T 3a79_B 496 LTSLQYIWLHDNP 508 (562)
T ss_dssp CTTCCCEECCSCC
T ss_pred CCCCCEEEecCCC
Confidence 7888888888775
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=3e-23 Score=189.35 Aligned_cols=264 Identities=18% Similarity=0.179 Sum_probs=144.0
Q ss_pred cccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEc
Q 047708 92 FEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSL 169 (397)
Q Consensus 92 ~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l 169 (397)
.++++.|++++|.+..++. .+ ++++|+.|++++|.+..+++..|.++++|++|++++|.+..+|..+. ++|++|++
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEEC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEEC
Confidence 3566666666666666433 22 66666666666666655554555666666666666666666655444 56666666
Q ss_pred cCccCcCCCc-cccCCCCCCEEEccCCCCC---ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccc
Q 047708 170 HDCRRFGDLP-LIGELSLLEILDLSKSDVS---EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFH 245 (397)
Q Consensus 170 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~---~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 245 (397)
++|.+...++ .+..+++|++|++++|.++ ..|..+..+ +|++|++++ +.++.+|.. + .++|++|++++|.+
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~-n~l~~l~~~-~--~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE-AKLTGIPKD-L--PETLNELHLDHNKI 205 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS-SBCSSCCSS-S--CSSCSCCBCCSSCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC-CCCCccCcc-c--cCCCCEEECCCCcC
Confidence 6666655544 4666666666666666654 233444555 666666666 445555543 2 25666666666665
Q ss_pred cccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCC-ccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccc
Q 047708 246 HWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSS-DMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCS 323 (397)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 323 (397)
.+ ..+..+..+++|++|++++|.+..++. .+. +++|+.|+++.|... . ++ ..+.. ++
T Consensus 206 ~~-----------~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~-lp---~~l~~-----l~ 264 (332)
T 2ft3_A 206 QA-----------IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R-VP---AGLPD-----LK 264 (332)
T ss_dssp CC-----------CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B-CC---TTGGG-----CT
T ss_pred Cc-----------cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e-cC---hhhhc-----Cc
Confidence 54 223455566667777777666555544 345 666777766665433 1 11 12222 55
Q ss_pred cccceec-ccccccchHHHHH-H-----HhhccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708 324 RAMGLSQ-DMRISGVHSWIKN-L-----LLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN 383 (397)
Q Consensus 324 ~L~~L~l-~~~~~~lp~~~~~-~-----~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~ 383 (397)
+|+.|++ ++.++.+|..... . ..+|+.|++.+++-...-........+++|+.|++++|.
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 6666666 5555555432111 0 134666666664422111111223456666666666654
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=3.9e-24 Score=193.36 Aligned_cols=196 Identities=21% Similarity=0.268 Sum_probs=124.8
Q ss_pred ccCceEEccCCCccc---CCCcC-CCCCccEEEccC-CCCc-ccChhhhcCCCcccEEEcCCCCCC-CCChhhcCcccCc
Q 047708 93 EDLTGISLMFNDIHE---VPDEL-ECPKLQALLLQE-NSLL-VIPDRFFQGMKDLKVLDMGGIRGF-SLPSSLSFLINLR 165 (397)
Q Consensus 93 ~~l~~l~l~~~~~~~---~~~~~-~~~~L~~L~l~~-~~~~-~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~ 165 (397)
.+++.|+++++.+.+ +|..+ ++++|++|++++ |.+. .+|.. +.++++|++|++++|.+. .+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 456677777777663 55544 667777777774 5533 44443 467777777777777763 5666677777777
Q ss_pred EEEccCccCcCCCc-cccCCCCCCEEEccCCCCC-ccchhhhCCC-CCCeeecCCCCCCCCCchhhhcCCCCCCEEEeec
Q 047708 166 TLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS-EIPISFGRLS-HLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242 (397)
Q Consensus 166 ~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 242 (397)
+|++++|.+....| .+..+++|++|++++|.++ .+|..++.++ +|++|++++|...+.+|.. ++.++ |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcC
Confidence 77777777664444 6677777777777777766 6666777766 7777777774333345544 56665 77777777
Q ss_pred ccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCc
Q 047708 243 SFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDL 302 (397)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~ 302 (397)
|.+.+ ..+..+..+++|+.|++++|.+...+..+. +++|+.|+++.|..
T Consensus 207 N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 207 NMLEG-----------DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp SEEEE-----------CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCC
T ss_pred CcccC-----------cCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcc
Confidence 76665 234556666777777777776544333444 66666666665554
No 29
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=2.7e-23 Score=189.66 Aligned_cols=263 Identities=17% Similarity=0.160 Sum_probs=210.0
Q ss_pred ccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccC
Q 047708 93 EDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHD 171 (397)
Q Consensus 93 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~ 171 (397)
.+++.++++++.+..+|... .+.|+.|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 36899999999999888766 47899999999998888777789999999999999999766 77899999999999999
Q ss_pred ccCcCCCccccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCC-CCchhhhcCCCCCCEEEeecccccccc
Q 047708 172 CRRFGDLPLIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLE-LIPRGVLSRLRKLEELYMSRSFHHWQF 249 (397)
Q Consensus 172 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~ 249 (397)
|.+...++.+. ++|++|++++|.++.+|. .+..+++|++|++++|.... ......++.+ +|++|++++|.+.+
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-- 186 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-- 186 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS--
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc--
Confidence 99876665554 899999999999998875 58899999999999954321 2333336777 99999999999875
Q ss_pred cCCCccCccccccccCCCCCCCEEEEeccCCCCCC-Cccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccc
Q 047708 250 EGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMS-SDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMG 327 (397)
Q Consensus 250 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~ 327 (397)
++..+ .++|++|++++|.+..++ ..+. +++|+.|+++.|...... + ..+.. +++|+.
T Consensus 187 ----------l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~---~~~~~-----l~~L~~ 245 (332)
T 2ft3_A 187 ----------IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-N---GSLSF-----LPTLRE 245 (332)
T ss_dssp ----------CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-T---TGGGG-----CTTCCE
T ss_pred ----------cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-h---hHhhC-----CCCCCE
Confidence 22222 278999999999977776 4577 999999999988654321 1 13333 889999
Q ss_pred eec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccC-----CCCCccEEEEeccCC
Q 047708 328 LSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLAND-----GFNELMFLGIFGCNE 384 (397)
Q Consensus 328 L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~-----~~~~L~~L~i~~c~~ 384 (397)
|++ ++.++.+|.++..+ ++|++|++++ +.++.++.....+ .+++|+.|++.++|-
T Consensus 246 L~L~~N~l~~lp~~l~~l-~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 246 LHLDNNKLSRVPAGLPDL-KLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp EECCSSCCCBCCTTGGGC-TTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred EECCCCcCeecChhhhcC-ccCCEEECCC-CCCCccChhHccccccccccccccceEeecCcc
Confidence 999 88899999888777 6999999998 5677765332211 267899999999974
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=2.8e-23 Score=203.51 Aligned_cols=167 Identities=23% Similarity=0.266 Sum_probs=130.8
Q ss_pred cCCccCCCCCccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-
Q 047708 79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP- 155 (397)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~- 155 (397)
.+..+..+|.. -.++++.|++++|.++.++.. + ++++|++|++++|.+..+++..|.++++|++|++++|.+..++
T Consensus 15 ~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 15 MELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp CSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence 34445555653 346789999999998886543 3 8899999999999988888777899999999999999886664
Q ss_pred hhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCc--cchhhhCCCCCCeeecCCCCCCCCCchhhhcCC
Q 047708 156 SSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSE--IPISFGRLSHLRLLDLTDCDDLELIPRGVLSRL 232 (397)
Q Consensus 156 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l 232 (397)
..++++++|++|++++|.+...++ .++.+++|++|++++|.++. +|..++++++|++|++++ +.++.++...++.+
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l 172 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVL 172 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT-SCCCEECGGGGHHH
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC-CccceecHHHccch
Confidence 678899999999999998877666 68899999999999998874 788899999999999998 45555554446666
Q ss_pred CCC----CEEEeecccccc
Q 047708 233 RKL----EELYMSRSFHHW 247 (397)
Q Consensus 233 ~~L----~~L~l~~~~~~~ 247 (397)
++| +.+++++|.+.+
T Consensus 173 ~~L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 173 HQMPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp HTCTTCCCEEECTTCCCCE
T ss_pred hccchhhhhcccCCCCcee
Confidence 666 667777666544
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=3.4e-23 Score=193.28 Aligned_cols=263 Identities=15% Similarity=0.198 Sum_probs=185.6
Q ss_pred cCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccCccCcCCCc-cccCCCCCC
Q 047708 111 ELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLE 188 (397)
Q Consensus 111 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~ 188 (397)
...+++++.|+++++.+..+|..+|..+++|++|+++++.+..++ ..+..+++|++|++++|.+...++ .++.+++|+
T Consensus 41 ~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 346789999999999999999999999999999999999997765 488999999999999999988877 689999999
Q ss_pred EEEccCCCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccC-----cccccc
Q 047708 189 ILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSS-----SNAKFI 262 (397)
Q Consensus 189 ~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~~~ 262 (397)
+|++++|.++.+|.. +.++++|++|++++ +.++.+++..++.+++|++|++++|.+.+.-......- ....+.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccc
Confidence 999999999999876 48999999999999 56677766668999999999999998875211000000 000000
Q ss_pred ccCC---------------------CCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhccc
Q 047708 263 ELGS---------------------LSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKK 320 (397)
Q Consensus 263 ~l~~---------------------l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~ 320 (397)
.+.. .++|+.|++++|.+...+ ++. +++|+.|+++.|...... + ..+..
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~---~~~~~---- 270 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIM-Y---HPFVK---- 270 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEE-S---GGGTT----
T ss_pred ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcC-h---hHccc----
Confidence 1111 234555555555554443 344 677777777766543211 1 12333
Q ss_pred ccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEee
Q 047708 321 RCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLL 389 (397)
Q Consensus 321 ~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~ 389 (397)
+++|+.|++ ++.++.+|.....+ ++|++|++++| .++.++..+ +.+++|+.|++++|+ ++.++
T Consensus 271 -l~~L~~L~L~~n~l~~~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~N~-i~~~~ 334 (390)
T 3o6n_A 271 -MQRLERLYISNNRLVALNLYGQPI-PTLKVLDLSHN-HLLHVERNQ--PQFDRLENLYLDHNS-IVTLK 334 (390)
T ss_dssp -CSSCCEEECCSSCCCEEECSSSCC-TTCCEEECCSS-CCCCCGGGH--HHHTTCSEEECCSSC-CCCCC
T ss_pred -cccCCEEECCCCcCcccCcccCCC-CCCCEEECCCC-cceecCccc--cccCcCCEEECCCCc-cceeC
Confidence 667777777 66666666554444 57777777764 555554332 367778888877764 44443
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.4e-22 Score=192.47 Aligned_cols=144 Identities=18% Similarity=0.130 Sum_probs=65.1
Q ss_pred cccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEc
Q 047708 90 NKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSL 169 (397)
Q Consensus 90 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l 169 (397)
..+++|+.|++++|.+.+++ ..++++|+.|++++|.+..++ +..+++|++|++++|.+..++ ++.+++|++|++
T Consensus 82 ~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l 155 (457)
T 3bz5_A 82 SQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDC 155 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEEC
T ss_pred ccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec--cccCCcCCEEEC
Confidence 34444455555544444442 224444555555544444333 344445555555554444332 444444555555
Q ss_pred cCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708 170 HDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH 246 (397)
Q Consensus 170 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 246 (397)
++|...+.. .++.+++|++|++++|.++.+| ++.+++|+.|++++ +.++.++ ++.+++|++|++++|.+.
T Consensus 156 ~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~-N~l~~~~---l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 156 HLNKKITKL-DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDT-NNITKLD---LNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp TTCSCCCCC-CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCS-SCCSCCC---CTTCTTCSEEECCSSCCS
T ss_pred CCCCccccc-ccccCCcCCEEECCCCccceec--cccCCCCCEEECcC-CcCCeec---cccCCCCCEEECcCCccc
Confidence 444332222 3444444555555554444443 44444455555544 2333332 344444555555444443
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=1.6e-24 Score=195.98 Aligned_cols=246 Identities=17% Similarity=0.159 Sum_probs=201.8
Q ss_pred CCccEEEccCCCCc---ccChhhhcCCCcccEEEcCC-CCC-CCCChhhcCcccCcEEEccCccCcCCCc-cccCCCCCC
Q 047708 115 PKLQALLLQENSLL---VIPDRFFQGMKDLKVLDMGG-IRG-FSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLE 188 (397)
Q Consensus 115 ~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~-~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~ 188 (397)
.+++.|++++|.+. .+|.. +.++++|++|++++ +.+ ..+|..++.+++|++|++++|.+.+..| .+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 57999999999966 46654 69999999999995 777 5789999999999999999999985555 899999999
Q ss_pred EEEccCCCCC-ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCC-CCCEEEeecccccccccCCCccCccccccccCC
Q 047708 189 ILDLSKSDVS-EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLR-KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGS 266 (397)
Q Consensus 189 ~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 266 (397)
+|++++|.++ .+|..+..+++|++|++++|...+.+|.. ++.++ +|++|++++|.+.+. .+..+..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~-----------~~~~~~~ 196 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGK-----------IPPTFAN 196 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEE-----------CCGGGGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeecc-----------CChHHhC
Confidence 9999999998 88999999999999999995554478877 88888 999999999999873 4566667
Q ss_pred CCCCCEEEEeccCCC-CCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccc-cchHHHH
Q 047708 267 LSRLTSLHIHIPNGK-IMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRIS-GVHSWIK 342 (397)
Q Consensus 267 l~~L~~L~l~~~~~~-~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~-~lp~~~~ 342 (397)
++ |++|++++|.+. ..|..+. +++|+.|+++.|..... ++ .+.. +++|+.|++ ++.+. .+|.++.
T Consensus 197 l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~----~~~~-----l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-LG----KVGL-----SKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-GG----GCCC-----CTTCCEEECCSSCCEECCCGGGG
T ss_pred Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee-cC----cccc-----cCCCCEEECcCCcccCcCChHHh
Confidence 76 999999999854 5666677 99999999998875422 11 2333 789999999 66676 7898888
Q ss_pred HHHhhccceecccCCChh-hhhhccccCCCCCccEEEEeccCCceEee
Q 047708 343 NLLLRSEILALVDVNDLE-NIVSDLANDGFNELMFLGIFGCNEMKCLL 389 (397)
Q Consensus 343 ~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~~~L~~L~i~~c~~L~~i~ 389 (397)
.+ ++|++|+|+++. +. .+| . .+.+++|+.|++.+++.+...|
T Consensus 266 ~l-~~L~~L~Ls~N~-l~~~ip-~--~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 266 QL-KFLHSLNVSFNN-LCGEIP-Q--GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GC-TTCCEEECCSSE-EEEECC-C--STTGGGSCGGGTCSSSEEESTT
T ss_pred cC-cCCCEEECcCCc-ccccCC-C--CccccccChHHhcCCCCccCCC
Confidence 77 699999999854 54 445 2 2689999999999998665433
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=7.8e-23 Score=199.46 Aligned_cols=209 Identities=22% Similarity=0.251 Sum_probs=163.5
Q ss_pred CCccCCCCCccccccCceEEccCCCcccCC-CcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh
Q 047708 80 GVELKDWPSINKFEDLTGISLMFNDIHEVP-DEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS 157 (397)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~ 157 (397)
++.+..+|.. -.+++++|++++|.+..++ ..+ ++++|++|++++|.+..+++..|.++++|++|++++|.+..++..
T Consensus 14 ~~~l~~ip~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 14 SRSFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp TSCCSSCCSC-CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred CCcccccccc-CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH
Confidence 4456666664 3478999999999998864 344 899999999999998888877789999999999999999777664
Q ss_pred -hcCcccCcEEEccCccCcCC--CccccCCCCCCEEEccCCC-CCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCC
Q 047708 158 -LSFLINLRTLSLHDCRRFGD--LPLIGELSLLEILDLSKSD-VSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRL 232 (397)
Q Consensus 158 -~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~-~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l 232 (397)
++++++|++|++++|.+... ++.++.+++|++|++++|. +..+| ..+..+++|++|++++|...+..|.. ++.+
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l 171 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSI 171 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTC
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhcc
Confidence 99999999999999998753 3478999999999999997 66776 57899999999999995544445554 8899
Q ss_pred CCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCC---Ccc-c-CCCccEEEEEecC
Q 047708 233 RKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMS---SDM-S-FQNLTSFSITIGD 301 (397)
Q Consensus 233 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~-~-~~~L~~L~l~~~~ 301 (397)
++|++|++..|.... + ....+..+++|++|++++|....++ ..+ . +++|+.|++..+.
T Consensus 172 ~~L~~L~l~~n~~~~-~----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 172 RDIHHLTLHLSESAF-L----------LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp SEEEEEEEECSBSTT-H----------HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred ccCceEecccCcccc-c----------chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 999999999887653 1 1112346899999999999866542 222 2 5666776666553
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=8.7e-23 Score=194.47 Aligned_cols=281 Identities=17% Similarity=0.166 Sum_probs=200.4
Q ss_pred ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCC-CC-ChhhcCcccCcEEEccCcc
Q 047708 96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGF-SL-PSSLSFLINLRTLSLHDCR 173 (397)
Q Consensus 96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l-~~~~~~l~~L~~L~l~~~~ 173 (397)
+.++..++.++.+|. -.++|++|++++|.+..+++..|.++++|++|++++|.+. .+ +..+.++++|++|++++|.
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 467777788888887 3478999999999988887777899999999999999884 44 5678999999999999999
Q ss_pred CcCCCc-cccCCCCCCEEEccCCCCCc-cchh--hhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccc
Q 047708 174 RFGDLP-LIGELSLLEILDLSKSDVSE-IPIS--FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQF 249 (397)
Q Consensus 174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~-lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 249 (397)
+....+ .++.+++|++|++++|.++. .|.. +..+++|++|++++|...+..|...++.+++|++|++++|.+.+..
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 987755 89999999999999999984 4544 8999999999999955444446555889999999999999987754
Q ss_pred cCCCccCc--------------cc---------cccccCCC---------------------------------------
Q 047708 250 EGEEDSSS--------------NA---------KFIELGSL--------------------------------------- 267 (397)
Q Consensus 250 ~~~~~~~~--------------~~---------~~~~l~~l--------------------------------------- 267 (397)
+....... .. ....+..+
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 43211000 00 00001111
Q ss_pred ------------------------CCCCEEEEeccCCCC-CCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccc
Q 047708 268 ------------------------SRLTSLHIHIPNGKI-MSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKR 321 (397)
Q Consensus 268 ------------------------~~L~~L~l~~~~~~~-~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~ 321 (397)
++|++|++++|.+.. .|..+. +++|+.|+++.|....... ..+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~----- 321 (455)
T 3v47_A 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD----NAFWG----- 321 (455)
T ss_dssp TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT----TTTTT-----
T ss_pred ccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh----hHhcC-----
Confidence 345555555555333 344456 7788888877665432211 12333
Q ss_pred cccccceec-ccccccc-hHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEeecC
Q 047708 322 CSRAMGLSQ-DMRISGV-HSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNS 391 (397)
Q Consensus 322 ~~~L~~L~l-~~~~~~l-p~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~~~ 391 (397)
+++|+.|++ ++.++.+ |..+..+ ++|++|+|+++ .++.++ .....++++|++|++++| .++.++..
T Consensus 322 l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~ 389 (455)
T 3v47_A 322 LTHLLKLNLSQNFLGSIDSRMFENL-DKLEVLDLSYN-HIRALG-DQSFLGLPNLKELALDTN-QLKSVPDG 389 (455)
T ss_dssp CTTCCEEECCSSCCCEECGGGGTTC-TTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred cccCCEEECCCCccCCcChhHhcCc-ccCCEEECCCC-cccccC-hhhccccccccEEECCCC-ccccCCHh
Confidence 778888888 6667665 4455555 68999999874 555553 122357899999999887 56777654
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=2.6e-22 Score=179.02 Aligned_cols=211 Identities=24% Similarity=0.296 Sum_probs=157.3
Q ss_pred CCccCCCCCccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCC-CCCC-C
Q 047708 80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIR-GFSL-P 155 (397)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l-~ 155 (397)
+..+..+|.. ..++++.|+++++.+..++.. + ++++|+.|++++|.+..+.+..|..+++|++|++++|. +..+ |
T Consensus 20 ~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 20 QQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp SSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred cCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 3445555542 456788888888888876543 3 77888888888888777766667888888888888886 6655 6
Q ss_pred hhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCC
Q 047708 156 SSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLR 233 (397)
Q Consensus 156 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 233 (397)
..+..+++|++|++++|.+...++ .+..+++|++|++++|.++.+|. .++.+++|++|++++ +.++.++...+..++
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLH 177 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCT
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCcc
Confidence 677788888888888888776655 67788888888888888887664 477888888888888 566677766577888
Q ss_pred CCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc-cc-CCCccEEEEEecCcc
Q 047708 234 KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-MS-FQNLTSFSITIGDLA 303 (397)
Q Consensus 234 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~~~~~~ 303 (397)
+|++|++++|.+.+ ..+..+..+++|+.|++++|.+..++.. +. +++|+.|+++.|+..
T Consensus 178 ~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 178 SLDRLLLHQNRVAH-----------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccCEEECCCCcccc-----------cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 88888888888765 2345677788888888888887776644 55 788888888877644
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=1.8e-22 Score=199.30 Aligned_cols=195 Identities=17% Similarity=0.158 Sum_probs=157.1
Q ss_pred CceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCcc
Q 047708 95 LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCR 173 (397)
Q Consensus 95 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~ 173 (397)
-++++.++..++.+|..+. +.++.|++++|.+..++...|.++++|++|++++|.+..+ |..++++++|++|++++|.
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCceEccCCCcccCCCCCC-CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 4678888899999987654 8999999999999888887789999999999999999766 6678999999999999999
Q ss_pred CcCCCc-cccCCCCCCEEEccCCCCCccc-hhhhCCCCCCeeecCCCCCCC-CCchhhhcCCCCCCEEEeeccccccccc
Q 047708 174 RFGDLP-LIGELSLLEILDLSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLE-LIPRGVLSRLRKLEELYMSRSFHHWQFE 250 (397)
Q Consensus 174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 250 (397)
+....| .++.+++|++|++++|.+..++ ..++++++|++|++++|...+ .+|.. ++++++|++|++++|.+.+..
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~- 169 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTIT- 169 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEEC-
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecC-
Confidence 988866 8999999999999999999776 689999999999999954433 46766 999999999999999987632
Q ss_pred CCCccCccccccccCCCCC----CCEEEEeccCCCCCCCccc-CCCccEEEEEecCc
Q 047708 251 GEEDSSSNAKFIELGSLSR----LTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDL 302 (397)
Q Consensus 251 ~~~~~~~~~~~~~l~~l~~----L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~ 302 (397)
+..++.+++ +.+|++++|.+..++.... ..+|+.|+++.+..
T Consensus 170 ----------~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~ 216 (606)
T 3vq2_A 170 ----------VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216 (606)
T ss_dssp ----------TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS
T ss_pred ----------hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCcc
Confidence 223333333 3367777777666655544 44677777666543
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=8.3e-23 Score=199.26 Aligned_cols=291 Identities=14% Similarity=0.159 Sum_probs=209.2
Q ss_pred CccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCC--CChhhcCccc
Q 047708 88 SINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFS--LPSSLSFLIN 163 (397)
Q Consensus 88 ~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~ 163 (397)
....++++++|++++|.+..++. .+ ++++|++|++++|.+..+++..|+++++|++|++++|.+.. .|..++++++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 34678999999999999998654 34 89999999999999999998888999999999999999964 4678999999
Q ss_pred CcEEEccCccCcC-CCc-cccCCCCCCEEEccCCCCC-ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEe
Q 047708 164 LRTLSLHDCRRFG-DLP-LIGELSLLEILDLSKSDVS-EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYM 240 (397)
Q Consensus 164 L~~L~l~~~~~~~-~~~-~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 240 (397)
|++|++++|.... .++ .+..+++|++|++++|.++ ..|..++.+++|++|+++. +....+|...++.+++|++|++
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL-SESAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC-SBSTTHHHHHHHSTTTBSEEEE
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc-CcccccchhhHhhcccccEEEc
Confidence 9999999998444 343 7899999999999999998 5788999999999999998 5567778776678999999999
Q ss_pred ecccccccc--cCCCcc--C------------c----ccc---------------------------------cccc---
Q 047708 241 SRSFHHWQF--EGEEDS--S------------S----NAK---------------------------------FIEL--- 264 (397)
Q Consensus 241 ~~~~~~~~~--~~~~~~--~------------~----~~~---------------------------------~~~l--- 264 (397)
++|.+.+.. +..... . . ..+ +..+
T Consensus 204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 283 (549)
T 2z81_A 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283 (549)
T ss_dssp ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence 999887631 000000 0 0 000 0000
Q ss_pred -----------------------CCCCCCCEEEEeccCCCCCCCcc-c-CCCccEEEEEecCcccchhhhHHHHhhhhcc
Q 047708 265 -----------------------GSLSRLTSLHIHIPNGKIMSSDM-S-FQNLTSFSITIGDLAAGFISAAIEVFSRKFK 319 (397)
Q Consensus 265 -----------------------~~l~~L~~L~l~~~~~~~~~~~~-~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~ 319 (397)
....+|++|++++|.+..+|..+ . +++|+.|+++.|......+. ....+.
T Consensus 284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~---- 358 (549)
T 2z81_A 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK-NSACKG---- 358 (549)
T ss_dssp CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHH-HHTCTT----
T ss_pred ccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcccccccc-chhhhh----
Confidence 11245677777777777777665 3 78888888887765432111 001122
Q ss_pred cccccccceec-ccccccchH---HHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEeec
Q 047708 320 KRCSRAMGLSQ-DMRISGVHS---WIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLN 390 (397)
Q Consensus 320 ~~~~~L~~L~l-~~~~~~lp~---~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~~ 390 (397)
.+++|+.|++ ++.++.+|. .+..+ ++|++|++++| .++.++.. .+.+++|++|++++|. ++.++.
T Consensus 359 -~l~~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N-~l~~lp~~--~~~~~~L~~L~Ls~N~-l~~l~~ 427 (549)
T 2z81_A 359 -AWPSLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRN-TFHPMPDS--CQWPEKMRFLNLSSTG-IRVVKT 427 (549)
T ss_dssp -SSTTCCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTC-CCCCCCSC--CCCCTTCCEEECTTSC-CSCCCT
T ss_pred -ccccCcEEEccCCcccccccchhhhhcC-CCCCEEECCCC-CCccCChh--hcccccccEEECCCCC-cccccc
Confidence 2677888888 677776653 23333 68888888874 56665532 2356777777777763 444443
No 39
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=4.6e-22 Score=177.43 Aligned_cols=262 Identities=18% Similarity=0.188 Sum_probs=197.9
Q ss_pred ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCcc-
Q 047708 96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCR- 173 (397)
Q Consensus 96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~- 173 (397)
+.++..++.+..+|... .++|+.|++++|.+..++...|..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 67888888888887644 57999999999999888887789999999999999999666 7789999999999999997
Q ss_pred CcCCCc-cccCCCCCCEEEccCCCCCcc-chhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccC
Q 047708 174 RFGDLP-LIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEG 251 (397)
Q Consensus 174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 251 (397)
+....+ .+..+++|++|++++|.++.+ |..+..+++|++|++++ +.++.++...++.+++|++|++++|.+.+
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---- 167 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISS---- 167 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCE----
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCcccc----
Confidence 655544 889999999999999999966 56789999999999999 66777777768999999999999998875
Q ss_pred CCccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEecCcccchhhhHHHHhhhhccccccccccee
Q 047708 252 EEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLS 329 (397)
Q Consensus 252 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~ 329 (397)
.....+..+++|++|++++|.+..+ |..+. +++|+.|+++.|..... .+ ..+.. +++|+.|+
T Consensus 168 -------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~---~~~~~-----l~~L~~L~ 231 (285)
T 1ozn_A 168 -------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-PT---EALAP-----LRALQYLR 231 (285)
T ss_dssp -------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CH---HHHTT-----CTTCCEEE
T ss_pred -------cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC-CH---HHccc-----CcccCEEe
Confidence 2233578899999999999997665 66777 99999999998865432 11 23444 88899999
Q ss_pred c-cccccc-ch-HHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEecc
Q 047708 330 Q-DMRISG-VH-SWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGC 382 (397)
Q Consensus 330 l-~~~~~~-lp-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c 382 (397)
+ ++.+.. .+ .|+. ..++.+......---..|..+....+..++..++.+|
T Consensus 232 l~~N~~~c~~~~~~~~---~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 232 LNDNPWVCDCRARPLW---AWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp CCSSCEECSGGGHHHH---HHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred ccCCCccCCCCcHHHH---HHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 9 555542 11 1222 2333333333111112232333334556666666666
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=1.8e-22 Score=191.37 Aligned_cols=227 Identities=22% Similarity=0.259 Sum_probs=159.3
Q ss_pred CCccCCCCCccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-
Q 047708 80 GVELKDWPSINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS- 156 (397)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~- 156 (397)
+..+..+|.. -.++++.|++++|.+..++. .+ ++++|+.|++++|.+..++...|.++++|++|++++|.+..++.
T Consensus 52 ~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 130 (440)
T 3zyj_A 52 RKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130 (440)
T ss_dssp SCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred CCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHh
Confidence 3445555543 34677888888888777543 23 77888888888888777776677888888888888888876655
Q ss_pred hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCC-CCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCC
Q 047708 157 SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKS-DVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLR 233 (397)
Q Consensus 157 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~-~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 233 (397)
.+..+++|++|++++|.+...++ .+..+++|++|++++| .+..++. .+..+++|++|++++ +.++.+|. +..++
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l~ 207 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPN--LTPLI 207 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCCC--CTTCS
T ss_pred HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC-CcCccccc--cCCCc
Confidence 57778888888888887766655 6777888888888874 4555554 577788888888888 56667774 77788
Q ss_pred CCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCC-ccc-CCCccEEEEEecCcccchhhhHH
Q 047708 234 KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSS-DMS-FQNLTSFSITIGDLAAGFISAAI 311 (397)
Q Consensus 234 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~~~L~~L~l~~~~~~~~~~~~~~ 311 (397)
+|++|++++|.+.+ .....+..+++|++|++++|.+..++. .+. +++|+.|+++.|....
T Consensus 208 ~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------- 269 (440)
T 3zyj_A 208 KLDELDLSGNHLSA-----------IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL------- 269 (440)
T ss_dssp SCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC-------
T ss_pred ccCEEECCCCccCc-----------cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc-------
Confidence 88888888887765 234567777888888888887655543 355 7888888887765431
Q ss_pred HHhhhhcccccccccceec
Q 047708 312 EVFSRKFKKRCSRAMGLSQ 330 (397)
Q Consensus 312 ~~l~~~~~~~~~~L~~L~l 330 (397)
++...+..+++|+.|++
T Consensus 270 --~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 270 --LPHDLFTPLHHLERIHL 286 (440)
T ss_dssp --CCTTTTSSCTTCCEEEC
T ss_pred --cChhHhccccCCCEEEc
Confidence 11122233677777777
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=1.5e-22 Score=192.47 Aligned_cols=227 Identities=22% Similarity=0.245 Sum_probs=155.6
Q ss_pred CCccCCCCCccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-
Q 047708 80 GVELKDWPSINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS- 156 (397)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~- 156 (397)
+..+..+|.. -.++++.|++++|.+..++. .+ ++++|+.|++++|.+..++...|.++++|++|++++|.+..+|.
T Consensus 63 ~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 141 (452)
T 3zyi_A 63 RRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG 141 (452)
T ss_dssp SSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred CCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChh
Confidence 3444444542 33577888888887777533 33 77888888888887777776667778888888888887766654
Q ss_pred hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCC-CCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCC
Q 047708 157 SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKS-DVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLR 233 (397)
Q Consensus 157 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~-~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 233 (397)
.+..+++|++|++++|.+...++ .+..+++|++|++++| .+..++. .+..+++|++|++++ +.++.+|. +..++
T Consensus 142 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l~ 218 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPN--LTPLV 218 (452)
T ss_dssp TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCC--CTTCT
T ss_pred hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-Cccccccc--ccccc
Confidence 36677888888888887766555 6777888888888774 5556654 567778888888887 55666664 67778
Q ss_pred CCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCC-Cccc-CCCccEEEEEecCcccchhhhHH
Q 047708 234 KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMS-SDMS-FQNLTSFSITIGDLAAGFISAAI 311 (397)
Q Consensus 234 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~-~~~L~~L~l~~~~~~~~~~~~~~ 311 (397)
+|++|++++|.+.+ ..+..+..+++|++|++++|.+..++ ..+. +++|+.|+++.|....
T Consensus 219 ~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------- 280 (452)
T 3zyi_A 219 GLEELEMSGNHFPE-----------IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS------- 280 (452)
T ss_dssp TCCEEECTTSCCSE-----------ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-------
T ss_pred cccEEECcCCcCcc-----------cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc-------
Confidence 88888888887765 23456777788888888888765553 3455 7888888887775431
Q ss_pred HHhhhhcccccccccceec
Q 047708 312 EVFSRKFKKRCSRAMGLSQ 330 (397)
Q Consensus 312 ~~l~~~~~~~~~~L~~L~l 330 (397)
++...+..+++|+.|++
T Consensus 281 --~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 281 --LPHDLFTPLRYLVELHL 297 (452)
T ss_dssp --CCTTSSTTCTTCCEEEC
T ss_pred --cChHHhccccCCCEEEc
Confidence 11222233667777777
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=3.5e-22 Score=193.56 Aligned_cols=147 Identities=21% Similarity=0.210 Sum_probs=108.7
Q ss_pred cCCccCCCCCccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh
Q 047708 79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS 156 (397)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 156 (397)
.++.+..+|... .+++++|++++|.+..++. .+ ++++|++|++++|.+..+++..|.++++|++|++++|.+..+|.
T Consensus 8 s~n~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 86 (520)
T 2z7x_B 8 SKNGLIHVPKDL-SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC 86 (520)
T ss_dssp TTSCCSSCCCSC-CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC
T ss_pred CCCCcccccccc-cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc
Confidence 344555555532 2788888888888887653 23 78888888888888777766667888888888888888877776
Q ss_pred hhcCcccCcEEEccCccCcCC-C-ccccCCCCCCEEEccCCCCCccchhhhCCCCC--CeeecCCCCC--CCCCchhhhc
Q 047708 157 SLSFLINLRTLSLHDCRRFGD-L-PLIGELSLLEILDLSKSDVSEIPISFGRLSHL--RLLDLTDCDD--LELIPRGVLS 230 (397)
Q Consensus 157 ~~~~l~~L~~L~l~~~~~~~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L--~~L~l~~~~~--~~~~~~~~~~ 230 (397)
. .+++|++|++++|.+... . ..++.+++|++|++++|.++. ..+..+++| ++|++++|.. ....|.. ++
T Consensus 87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~ 161 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQ 161 (520)
T ss_dssp C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TT
T ss_pred c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-cc
Confidence 6 788888888888888663 3 478888888888888888775 356667777 8888888554 3444544 55
Q ss_pred C
Q 047708 231 R 231 (397)
Q Consensus 231 ~ 231 (397)
.
T Consensus 162 ~ 162 (520)
T 2z7x_B 162 D 162 (520)
T ss_dssp T
T ss_pred c
Confidence 4
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=2.6e-22 Score=184.70 Aligned_cols=260 Identities=20% Similarity=0.209 Sum_probs=205.1
Q ss_pred cCCccCCCCCccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh
Q 047708 79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS 156 (397)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 156 (397)
.+..+..+|.. -.+++++|++++|.+..++. .+ ++++|+.|++++|.+..+++..|.++++|++|++++|.+..+|.
T Consensus 39 ~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 117 (353)
T 2z80_A 39 SSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117 (353)
T ss_dssp CSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred CCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence 34556666653 45689999999999999776 33 89999999999999888877778999999999999999988887
Q ss_pred h-hcCcccCcEEEccCccCcCCCc--cccCCCCCCEEEccCC-CCCcc-chhhhCCCCCCeeecCCCCCCCCCchhhhcC
Q 047708 157 S-LSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKS-DVSEI-PISFGRLSHLRLLDLTDCDDLELIPRGVLSR 231 (397)
Q Consensus 157 ~-~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~-~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 231 (397)
. ++.+++|++|++++|.+...++ .+..+++|++|++++| .+..+ |..++.+++|++|++++| .++.+++..++.
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~ 196 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKS 196 (353)
T ss_dssp HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTT
T ss_pred hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhc
Confidence 6 8899999999999999977665 6889999999999999 57766 468899999999999994 455554444899
Q ss_pred CCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc----cc-CCCccEEEEEecCcccch
Q 047708 232 LRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD----MS-FQNLTSFSITIGDLAAGF 306 (397)
Q Consensus 232 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~ 306 (397)
+++|++|++++|.+.. + ....+..+++|++|++++|.+..++.. .. ...++.+++..+......
T Consensus 197 l~~L~~L~l~~n~l~~-~----------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 197 IQNVSHLILHMKQHIL-L----------LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CSEEEEEEEECSCSTT-H----------HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cccCCeecCCCCcccc-c----------hhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 9999999999998753 1 122344578999999999996665432 22 677889999877654332
Q ss_pred hhhHHHHhhhhcccccccccceec-ccccccchHHH-HHHHhhccceecccCC
Q 047708 307 ISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWI-KNLLLRSEILALVDVN 357 (397)
Q Consensus 307 ~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~-~~~~~~L~~L~l~~c~ 357 (397)
.......+.. +++|+.|++ ++.++.+|.++ ..+ ++|++|+|++++
T Consensus 266 l~~l~~~l~~-----l~~L~~L~Ls~N~l~~i~~~~~~~l-~~L~~L~L~~N~ 312 (353)
T 2z80_A 266 LFQVMKLLNQ-----ISGLLELEFSRNQLKSVPDGIFDRL-TSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHT-----CTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSC
T ss_pred hhhhHHHHhc-----ccCCCEEECCCCCCCccCHHHHhcC-CCCCEEEeeCCC
Confidence 2212233444 889999999 88889999886 445 799999999865
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.1e-22 Score=200.02 Aligned_cols=278 Identities=17% Similarity=0.130 Sum_probs=213.7
Q ss_pred ccccCceEEccCCCcccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEE
Q 047708 91 KFEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTL 167 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L 167 (397)
.+++++.+++.++.+..+|... ++++|+.|++++|.+..+++..|..+++|++|++++|.+..+|. .++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 5788999999999999988865 79999999999999888887778999999999999999976654 57899999999
Q ss_pred EccCccCcCCCcc-ccCCCCCCEEEccCCCCCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccc
Q 047708 168 SLHDCRRFGDLPL-IGELSLLEILDLSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFH 245 (397)
Q Consensus 168 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 245 (397)
++++|.+...++. ++.+++|++|++++|.+..++ ..++.+++|++|++++ +.++.++ ++.+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcC---hhhhhhhhhhhcccCcc
Confidence 9999999877774 699999999999999998665 4789999999999999 5666665 56789999999999987
Q ss_pred cccccCC-------CccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhh
Q 047708 246 HWQFEGE-------EDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRK 317 (397)
Q Consensus 246 ~~~~~~~-------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~ 317 (397)
.+..... .......+... ..++|+.|++++|.+... .++. +++|+.|+++.|....... ..+..
T Consensus 205 ~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~~- 276 (597)
T 3oja_B 205 STLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMY----HPFVK- 276 (597)
T ss_dssp SEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEES----GGGTT-
T ss_pred ccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCH----HHhcC-
Confidence 6521110 00001111111 135788888888887665 4566 8999999998876543211 23333
Q ss_pred cccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEee
Q 047708 318 FKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLL 389 (397)
Q Consensus 318 ~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~ 389 (397)
+++|+.|++ ++.+..+|..+..+ ++|+.|+|++ +.+..++..+ +.+++|+.|++++|+ +..++
T Consensus 277 ----l~~L~~L~Ls~N~l~~l~~~~~~l-~~L~~L~Ls~-N~l~~i~~~~--~~l~~L~~L~L~~N~-l~~~~ 340 (597)
T 3oja_B 277 ----MQRLERLYISNNRLVALNLYGQPI-PTLKVLDLSH-NHLLHVERNQ--PQFDRLENLYLDHNS-IVTLK 340 (597)
T ss_dssp ----CSSCCEEECTTSCCCEEECSSSCC-TTCCEEECCS-SCCCCCGGGH--HHHTTCSEEECCSSC-CCCCC
T ss_pred ----ccCCCEEECCCCCCCCCCcccccC-CCCcEEECCC-CCCCccCccc--ccCCCCCEEECCCCC-CCCcC
Confidence 788999999 77788787666555 6999999998 4566665433 478999999999875 44443
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=7.4e-22 Score=201.69 Aligned_cols=291 Identities=19% Similarity=0.206 Sum_probs=191.3
Q ss_pred EecCCccCCCCCccccccCceEEccCCCcccC-CCcC-CCCCccEEEccCCC-CcccChhhhcCCCcccEEEcCCCCCCC
Q 047708 77 IKAGVELKDWPSINKFEDLTGISLMFNDIHEV-PDEL-ECPKLQALLLQENS-LLVIPDRFFQGMKDLKVLDMGGIRGFS 153 (397)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~ 153 (397)
...+..+..+|. ..+++++|++++|.++.+ +..+ ++++|+.|++++|. ...+++..|.++++|++|++++|.+..
T Consensus 10 dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 10 FYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp EESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred EccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 344566777777 568899999999999885 4444 89999999999996 677766678999999999999999965
Q ss_pred C-ChhhcCcccCcEEEccCccCcCCCc---cccCCCCCCEEEccCCCCCcc--chhhhCCCCCCeeecCCCCCCCCCchh
Q 047708 154 L-PSSLSFLINLRTLSLHDCRRFGDLP---LIGELSLLEILDLSKSDVSEI--PISFGRLSHLRLLDLTDCDDLELIPRG 227 (397)
Q Consensus 154 l-~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~l--p~~i~~l~~L~~L~l~~~~~~~~~~~~ 227 (397)
+ |..++++++|++|++++|.+....+ .++.+++|++|++++|.++.+ +..++++++|++|++++|......+..
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 5 7889999999999999999876443 389999999999999988855 357899999999999985433333332
Q ss_pred hhcCC--CCCCEEEeecccccccccC------------------------------CCccC-------------------
Q 047708 228 VLSRL--RKLEELYMSRSFHHWQFEG------------------------------EEDSS------------------- 256 (397)
Q Consensus 228 ~~~~l--~~L~~L~l~~~~~~~~~~~------------------------------~~~~~------------------- 256 (397)
++.+ ++|+.|+++.|.+.+..+. .....
T Consensus 168 -l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 168 -LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp -GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred -cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 4443 4555555555444432221 10000
Q ss_pred ------ccccccccCC--CCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEecCcccchhhhHHHHhhhhccccccccc
Q 047708 257 ------SNAKFIELGS--LSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAM 326 (397)
Q Consensus 257 ------~~~~~~~l~~--l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~ 326 (397)
.......+.. .++|+.|++++|.+..+ +..+. +++|+.|+++.|...... + ..+. .+++|+
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~---~~~~-----~l~~L~ 317 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-D---EAFY-----GLDNLQ 317 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-T---TTTT-----TCSSCC
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-h---HHhc-----CCCCCC
Confidence 0000001111 25677777777775444 33455 777888888776543211 1 1222 366777
Q ss_pred ceec-ccccccc-hHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEecc
Q 047708 327 GLSQ-DMRISGV-HSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGC 382 (397)
Q Consensus 327 ~L~l-~~~~~~l-p~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c 382 (397)
.|++ ++.++.+ |..+..+ ++|++|+++++ .+..++.. ...++++|+.|++++|
T Consensus 318 ~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFYGL-PKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDN 372 (844)
T ss_dssp EEEEESCCCSCCCSCSCSSC-TTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETC
T ss_pred EEECCCCCCCccCHHHhcCC-CCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCC
Confidence 7777 5555544 4444444 47777777763 45544311 2345667777777665
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=7.5e-22 Score=197.42 Aligned_cols=167 Identities=20% Similarity=0.190 Sum_probs=112.7
Q ss_pred CCccCCCCCccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-
Q 047708 80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS- 156 (397)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~- 156 (397)
+..+..+|.. -.+++++|++++|.+..++.. + ++++|++|++++|.+..+++..|.++++|++|++++|.+..+|.
T Consensus 13 ~~~L~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 91 (680)
T 1ziw_A 13 HLKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK 91 (680)
T ss_dssp SSCCSSCCSC-SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccccccc-cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh
Confidence 3444555543 236777788887777776553 2 67777888887777666666667777778888887777766665
Q ss_pred hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCcc-chhhhCCCCCCeeecCCCCCCCCCchhhhc--CC
Q 047708 157 SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDDLELIPRGVLS--RL 232 (397)
Q Consensus 157 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~--~l 232 (397)
.++++++|++|++++|.+...++ .++.+++|++|++++|.++.. |..++++++|++|++++ +.++.++...++ .+
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN-NKIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS-SCCCCBCHHHHGGGTT
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC-CcccccCHHHhhcccc
Confidence 47777777888877777766654 677777777777777777643 45567777777777777 344444443333 44
Q ss_pred CCCCEEEeeccccccc
Q 047708 233 RKLEELYMSRSFHHWQ 248 (397)
Q Consensus 233 ~~L~~L~l~~~~~~~~ 248 (397)
++|++|++++|.+.+.
T Consensus 171 ~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEF 186 (680)
T ss_dssp CEESEEECTTCCCCCB
T ss_pred ccccEEECCCCccccc
Confidence 6777777777766543
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.2e-21 Score=191.55 Aligned_cols=139 Identities=22% Similarity=0.159 Sum_probs=111.8
Q ss_pred EecCCccCCCCCccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC
Q 047708 77 IKAGVELKDWPSINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL 154 (397)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 154 (397)
...+..+..+|.. -.+++++|++++|.+..++. .+ ++++|++|++++|.+..+++..|.++++|++|++++|.+..+
T Consensus 37 ~ls~~~L~~ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 115 (562)
T 3a79_B 37 DYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI 115 (562)
T ss_dssp ECTTSCCCSCCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred EcCCCCCccCCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCcc
Confidence 3445566666654 34789999999999998764 33 889999999999998888777789999999999999999888
Q ss_pred ChhhcCcccCcEEEccCccCcCCC--ccccCCCCCCEEEccCCCCCccchhhhCCCCC--CeeecCCCCC
Q 047708 155 PSSLSFLINLRTLSLHDCRRFGDL--PLIGELSLLEILDLSKSDVSEIPISFGRLSHL--RLLDLTDCDD 220 (397)
Q Consensus 155 ~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L--~~L~l~~~~~ 220 (397)
|.. .+++|++|++++|.+...+ ..++.+++|++|++++|.++.. .+..+++| ++|++++|..
T Consensus 116 p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 116 SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence 876 8999999999999987643 3889999999999999988752 45555666 9999988544
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=8.3e-22 Score=197.13 Aligned_cols=287 Identities=21% Similarity=0.223 Sum_probs=207.6
Q ss_pred CCccCCCCC--ccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC
Q 047708 80 GVELKDWPS--INKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP 155 (397)
Q Consensus 80 ~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 155 (397)
++.+...+. ...+++|++|++++|.+..++.. + ++++|++|++++|.+..++...|.++++|++|++++|.+..++
T Consensus 34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 113 (680)
T 1ziw_A 34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113 (680)
T ss_dssp SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC
Confidence 444444443 46789999999999999986443 4 8999999999999999999877899999999999999997775
Q ss_pred -hhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccch-hh--hCCCCCCeeecCCCCCCCCCchhhhc
Q 047708 156 -SSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SF--GRLSHLRLLDLTDCDDLELIPRGVLS 230 (397)
Q Consensus 156 -~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i--~~l~~L~~L~l~~~~~~~~~~~~~~~ 230 (397)
..++++++|++|++++|.+...++ .++.+++|++|++++|.++.++. .+ ..+++|++|++++| .++.+++..++
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~ 192 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFH 192 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGGG
T ss_pred hhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC-cccccChhhhh
Confidence 579999999999999999877766 78899999999999999987764 33 35689999999994 55666555466
Q ss_pred CCCCC---------------------------CEEEeecccccccccCCCccCccccccccCCCC--CCCEEEEeccCCC
Q 047708 231 RLRKL---------------------------EELYMSRSFHHWQFEGEEDSSSNAKFIELGSLS--RLTSLHIHIPNGK 281 (397)
Q Consensus 231 ~l~~L---------------------------~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~ 281 (397)
.+++| +.|++++|.+.+ ..+..+..++ +|++|++++|.+.
T Consensus 193 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~-----------~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-----------TSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE-----------ECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc-----------cChhHhhccCcCCCCEEECCCCCcC
Confidence 66554 455555554443 2234455554 4999999999866
Q ss_pred CCC-Cccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceecc-cccc------cchH----HHHHHHhhc
Q 047708 282 IMS-SDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQD-MRIS------GVHS----WIKNLLLRS 348 (397)
Q Consensus 282 ~~~-~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~-~~~~------~lp~----~~~~~~~~L 348 (397)
.++ ..+. +++|+.|+++.|...... + ..+.. +++|+.|++. +... .+|. .+..+ ++|
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~-~---~~~~~-----l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L 331 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLF-S---HSLHG-----LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCL 331 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEEC-T---TTTTT-----CTTCCEEECTTCBCCC------CCEECTTTTTTC-TTC
T ss_pred ccCcccccCcccccEeeCCCCccCccC-h---hhhcC-----CCCccEEeccchhhhcccccccccccChhhcccC-CCC
Confidence 554 4567 899999999877644221 1 13333 7888888883 2211 2332 33334 689
Q ss_pred cceecccCCChhhhhhccccCCCCCccEEEEeccC-CceEeec
Q 047708 349 EILALVDVNDLENIVSDLANDGFNELMFLGIFGCN-EMKCLLN 390 (397)
Q Consensus 349 ~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~-~L~~i~~ 390 (397)
++|+++++ .+..++ .....++++|++|++++|. .+..++.
T Consensus 332 ~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~l~~ 372 (680)
T 1ziw_A 332 EHLNMEDN-DIPGIK-SNMFTGLINLKYLSLSNSFTSLRTLTN 372 (680)
T ss_dssp CEEECCSC-CBCCCC-TTTTTTCTTCCEEECTTCBSCCCEECT
T ss_pred CEEECCCC-ccCCCC-hhHhccccCCcEEECCCCchhhhhcch
Confidence 99999874 455543 2224588999999999885 3444443
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=2e-22 Score=181.67 Aligned_cols=235 Identities=20% Similarity=0.169 Sum_probs=183.9
Q ss_pred cCCccCCCCCccccccCceEEccCCCcccCCCcC--CCCCccEEEccCCCCccc---ChhhhcCCCcccEEEcCCCCCCC
Q 047708 79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVI---PDRFFQGMKDLKVLDMGGIRGFS 153 (397)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~ 153 (397)
.+..+..+|.. ..+++++|+++++.+..++... ++++|+.|++++|.+..+ +.. +..+++|++|++++|.+..
T Consensus 15 ~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~ 92 (306)
T 2z66_A 15 NSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVIT 92 (306)
T ss_dssp CSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEE
T ss_pred CCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCcccc
Confidence 34455555653 4578999999999999988753 899999999999986654 344 5679999999999999988
Q ss_pred CChhhcCcccCcEEEccCccCcCCCc--cccCCCCCCEEEccCCCCC-ccchhhhCCCCCCeeecCCCCCCC-CCchhhh
Q 047708 154 LPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVS-EIPISFGRLSHLRLLDLTDCDDLE-LIPRGVL 229 (397)
Q Consensus 154 l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~~ 229 (397)
+|..+..+++|++|++++|.+...++ .+..+++|++|++++|.+. ..|..+..+++|++|++++|...+ .+|.. +
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~ 171 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-F 171 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-C
T ss_pred ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-H
Confidence 88889999999999999999877664 7889999999999999888 455678899999999999954333 24544 8
Q ss_pred cCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCC-ccc-CCCccEEEEEecCcccchh
Q 047708 230 SRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSS-DMS-FQNLTSFSITIGDLAAGFI 307 (397)
Q Consensus 230 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~~~L~~L~l~~~~~~~~~~ 307 (397)
+.+++|++|++++|.+.+ ..+..+..+++|++|++++|.+..++. .+. +++|+.|+++.|.......
T Consensus 172 ~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 172 TELRNLTFLDLSQCQLEQ-----------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp TTCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred hhCcCCCEEECCCCCcCC-----------cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 899999999999998876 234677889999999999999877765 456 8999999999887543221
Q ss_pred hhHHHHhhhhcccccccccceec-ccccc
Q 047708 308 SAAIEVFSRKFKKRCSRAMGLSQ-DMRIS 335 (397)
Q Consensus 308 ~~~~~~l~~~~~~~~~~L~~L~l-~~~~~ 335 (397)
. .+.. -+++|+.|++ ++.+.
T Consensus 241 ~----~~~~----~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 241 Q----ELQH----FPSSLAFLNLTQNDFA 261 (306)
T ss_dssp S----SCCC----CCTTCCEEECTTCCEE
T ss_pred H----HHHh----hhccCCEEEccCCCee
Confidence 1 2222 1248899999 55554
No 50
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=6.8e-21 Score=169.99 Aligned_cols=201 Identities=20% Similarity=0.171 Sum_probs=176.7
Q ss_pred ccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEE
Q 047708 89 INKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLS 168 (397)
Q Consensus 89 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~ 168 (397)
...+++++.+++.++.++.+|..+. +.++.|++++|.+..++...|..+++|++|++++|.+..++.. +.+++|++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 3467889999999999999887663 7899999999998888877789999999999999999877664 7899999999
Q ss_pred ccCccCcCCCccccCCCCCCEEEccCCCCCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccc
Q 047708 169 LHDCRRFGDLPLIGELSLLEILDLSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHW 247 (397)
Q Consensus 169 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 247 (397)
+++|.+...+..+..+++|++|++++|.++.+| ..+..+++|++|++++ +.++.+|.+.+..+++|+.|++++|.+..
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCc
Confidence 999999877668899999999999999999887 5789999999999999 67788888878999999999999999875
Q ss_pred cccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcc
Q 047708 248 QFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLA 303 (397)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~ 303 (397)
.....+..+++|+.|++++|.+..+|..+. .++|+.+.++.|+..
T Consensus 163 -----------l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 -----------LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp -----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred -----------cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 123446789999999999999999999888 889999999988754
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=4.4e-21 Score=172.91 Aligned_cols=241 Identities=17% Similarity=0.123 Sum_probs=170.4
Q ss_pred ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC---ChhhcCcccCcEEEccCc
Q 047708 96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL---PSSLSFLINLRTLSLHDC 172 (397)
Q Consensus 96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~ 172 (397)
+.++..++.++.+|... .++|+.|++++|.+..++..+|.++++|++|++++|.+..+ +..+..+++|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 45677777777777644 36788888888888788877778888888888888887544 566777888888888888
Q ss_pred cCcCCCccccCCCCCCEEEccCCCCCccch--hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccccc
Q 047708 173 RRFGDLPLIGELSLLEILDLSKSDVSEIPI--SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFE 250 (397)
Q Consensus 173 ~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 250 (397)
.+...++.+..+++|++|++++|.++.++. .+..+++|++|++++| .+...+...++.+++|++|++++|.+.+.
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 165 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQEN-- 165 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGGG--
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccccc--
Confidence 876655577888888888888888776653 6778888888888884 44444444477888888888888877641
Q ss_pred CCCccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccce
Q 047708 251 GEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGL 328 (397)
Q Consensus 251 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L 328 (397)
..+..+..+++|++|++++|.+..+ |..+. +++|+.|+++.|....... ..+. .+++|+.|
T Consensus 166 --------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~-----~l~~L~~L 228 (306)
T 2z66_A 166 --------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT----FPYK-----CLNSLQVL 228 (306)
T ss_dssp --------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS----GGGT-----TCTTCCEE
T ss_pred --------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh----hhcc-----CcccCCEe
Confidence 1345677788888888888886665 45566 8888888888776432211 1222 36778888
Q ss_pred ec-cccccc-chHHHHHHHhhccceecccCC
Q 047708 329 SQ-DMRISG-VHSWIKNLLLRSEILALVDVN 357 (397)
Q Consensus 329 ~l-~~~~~~-lp~~~~~~~~~L~~L~l~~c~ 357 (397)
++ ++.+.. .|..+..++++|++|+|++++
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 88 555543 333444432478888888743
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=5.5e-20 Score=179.89 Aligned_cols=249 Identities=18% Similarity=0.091 Sum_probs=193.4
Q ss_pred ecCCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh
Q 047708 78 KAGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS 157 (397)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~ 157 (397)
..++.+..+|... .++++.|++++|.++.+|. .+++|+.|++++|.+..+|. .+++|++|++++|.+..+|.
T Consensus 47 ls~n~L~~lp~~l-~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~- 118 (622)
T 3g06_A 47 VGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA- 118 (622)
T ss_dssp CCSSCCSCCCSCC-CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC-
T ss_pred ecCCCcCccChhh-CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC-
Confidence 3455566666542 3789999999999998887 67899999999999888875 78999999999999988877
Q ss_pred hcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCE
Q 047708 158 LSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEE 237 (397)
Q Consensus 158 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 237 (397)
.+.+|++|++++|.+...+.. +++|++|++++|.++.+|. .+.+|+.|++++ +.++.+| ..+++|+.
T Consensus 119 --~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~-N~l~~l~----~~~~~L~~ 185 (622)
T 3g06_A 119 --LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYN-NQLTSLP----MLPSGLQE 185 (622)
T ss_dssp --CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCC----CCCTTCCE
T ss_pred --CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCC-CCCCCCc----ccCCCCcE
Confidence 678899999999988765543 4889999999999998875 346889999998 6677777 35788999
Q ss_pred EEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhh
Q 047708 238 LYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRK 317 (397)
Q Consensus 238 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~ 317 (397)
|++++|.+.+ + +. .+++|+.|++++|.+..+|.. +++|+.|+++.|.... ++
T Consensus 186 L~Ls~N~l~~-l-----------~~---~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~---------lp-- 237 (622)
T 3g06_A 186 LSVSDNQLAS-L-----------PT---LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTS---------LP-- 237 (622)
T ss_dssp EECCSSCCSC-C-----------CC---CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSC---------CC--
T ss_pred EECCCCCCCC-C-----------CC---ccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCc---------CC--
Confidence 9999998864 1 11 247888999999888777743 5788999888775432 11
Q ss_pred cccccccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCC
Q 047708 318 FKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNE 384 (397)
Q Consensus 318 ~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~ 384 (397)
..+++|+.|++ ++.++.+|. .+++|+.|+|++ +.++.++.. ...+++|+.|++++|+-
T Consensus 238 --~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~-N~L~~lp~~--l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 238 --VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYR-NQLTRLPES--LIHLSSETTVNLEGNPL 296 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCS-SCCCSCCGG--GGGSCTTCEEECCSCCC
T ss_pred --CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCC-CCCCcCCHH--HhhccccCEEEecCCCC
Confidence 23678888988 777888886 236899999987 467777643 34789999999998864
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.1e-20 Score=179.15 Aligned_cols=240 Identities=20% Similarity=0.239 Sum_probs=179.1
Q ss_pred CceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccCcc
Q 047708 95 LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHDCR 173 (397)
Q Consensus 95 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~ 173 (397)
.+.++..+..++.+|..+. +.++.|++++|.+..++...|.++++|++|++++|.+..++ ..+.++++|++|++++|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4567777777777776553 67888888888877777767788888888888888886654 567788888888888888
Q ss_pred CcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccC
Q 047708 174 RFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEG 251 (397)
Q Consensus 174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 251 (397)
+...++ .+..+++|++|++++|.++.+|. .+.++++|++|++++|+.++.++...+..+++|++|++++|.+..
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---- 199 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE---- 199 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS----
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc----
Confidence 876666 68888888888888888887664 677888888888888888888887768888888888888887763
Q ss_pred CCccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEecCcccchhhhHHHHhhhhccccccccccee
Q 047708 252 EEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLS 329 (397)
Q Consensus 252 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~ 329 (397)
+..+..+++|++|++++|.+..+ |..+. +++|+.|+++.|..... ....+..+++|+.|+
T Consensus 200 ---------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 200 ---------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI---------ERNAFDNLQSLVEIN 261 (440)
T ss_dssp ---------CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE---------CTTSSTTCTTCCEEE
T ss_pred ---------ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE---------ChhhhcCCCCCCEEE
Confidence 23567788888888888886665 44566 88888888887664321 112223377888888
Q ss_pred c-ccccccchHHHHHHHhhccceecccCC
Q 047708 330 Q-DMRISGVHSWIKNLLLRSEILALVDVN 357 (397)
Q Consensus 330 l-~~~~~~lp~~~~~~~~~L~~L~l~~c~ 357 (397)
+ ++.++.+|.......++|+.|+|++++
T Consensus 262 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 8 777777775443323688888888644
No 54
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2e-20 Score=168.54 Aligned_cols=194 Identities=18% Similarity=0.241 Sum_probs=169.9
Q ss_pred CccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEE
Q 047708 88 SINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTL 167 (397)
Q Consensus 88 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L 167 (397)
....+++++.|++.++.+..++....+++|+.|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred cHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 344688999999999999998866689999999999999888887 799999999999999998776 58999999999
Q ss_pred EccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccc
Q 047708 168 SLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHW 247 (397)
Q Consensus 168 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 247 (397)
++++|.+... +.+..+++|++|++++|.++.++. +..+++|++|++++ +.++.++. ++.+++|++|++++|.+.+
T Consensus 113 ~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 113 DLTSTQITDV-TPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGN-AQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp ECTTSCCCCC-GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred ECCCCCCCCc-hhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccC-CcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 9999998654 458999999999999999998876 88999999999999 56777776 8899999999999999875
Q ss_pred cccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcc
Q 047708 248 QFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLA 303 (397)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~ 303 (397)
...+..+++|++|++++|.+..++. +. +++|+.|+++.|...
T Consensus 188 -------------~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 188 -------------ISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp -------------CGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred -------------ChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence 2237789999999999999888874 56 999999999988754
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.4e-20 Score=178.99 Aligned_cols=240 Identities=21% Similarity=0.192 Sum_probs=178.4
Q ss_pred CceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCcc
Q 047708 95 LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCR 173 (397)
Q Consensus 95 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~ 173 (397)
.+.++..+..++.+|..+ .+.++.|++++|.+..++...|.++++|++|++++|.+..+ +..+.++++|++|++++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 456777777777777644 36788888888887777766678888888888888888655 4577888888888888888
Q ss_pred CcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccC
Q 047708 174 RFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEG 251 (397)
Q Consensus 174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 251 (397)
+...++ .+..+++|++|++++|.++.+|. .+.++++|++|++++|+.++.++...+..+++|++|++++|.+.+
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---- 210 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---- 210 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS----
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc----
Confidence 876666 57788888888888888887765 677888888888888888888887768888888888888888764
Q ss_pred CCccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEEEecCcccchhhhHHHHhhhhccccccccccee
Q 047708 252 EEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLS 329 (397)
Q Consensus 252 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~ 329 (397)
...+..+++|++|++++|.+..+ |..+. +++|+.|+++.|....... ..+. .+++|+.|+
T Consensus 211 ---------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~-----~l~~L~~L~ 272 (452)
T 3zyi_A 211 ---------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER----NAFD-----GLASLVELN 272 (452)
T ss_dssp ---------CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT----TTTT-----TCTTCCEEE
T ss_pred ---------cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH----HHhc-----CCCCCCEEE
Confidence 23567788888888888886665 44566 8888888888766432211 1232 377888888
Q ss_pred c-ccccccchHHHHHHHhhccceecccCC
Q 047708 330 Q-DMRISGVHSWIKNLLLRSEILALVDVN 357 (397)
Q Consensus 330 l-~~~~~~lp~~~~~~~~~L~~L~l~~c~ 357 (397)
+ ++.++.+|.......++|+.|+|++++
T Consensus 273 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 273 LAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCcCCccChHHhccccCCCEEEccCCC
Confidence 8 777777775543333688888888744
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=1.3e-20 Score=186.79 Aligned_cols=139 Identities=24% Similarity=0.281 Sum_probs=113.3
Q ss_pred cCCccCCCCCccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh
Q 047708 79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS 156 (397)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 156 (397)
.+..+..+|.. --+.+++|++++|.++.+++. + ++++|++|++++|.+..+++..|.++++|++|+|++|.+..+|.
T Consensus 39 ~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 39 MELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp TTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 34455566643 124789999999999987653 3 88999999999999888888888999999999999999877765
Q ss_pred -hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCC--ccchhhhCCCCCCeeecCCC
Q 047708 157 -SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVS--EIPISFGRLSHLRLLDLTDC 218 (397)
Q Consensus 157 -~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~ 218 (397)
.+.++++|++|++++|.+...++ .++.+++|++|++++|.++ .+|..++.+++|++|++++|
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 57889999999999998877766 6889999999999999887 45778888999999988874
No 57
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=5.9e-21 Score=195.03 Aligned_cols=273 Identities=17% Similarity=0.147 Sum_probs=188.3
Q ss_pred CccccccCceEEccCCCcc-cC-CCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCC-CChh--hcCc
Q 047708 88 SINKFEDLTGISLMFNDIH-EV-PDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFS-LPSS--LSFL 161 (397)
Q Consensus 88 ~~~~~~~l~~l~l~~~~~~-~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~--~~~l 161 (397)
....+++|+.|++++|... .+ +..+ ++++|++|++++|.+..+++..|.++++|++|++++|.+.. +|.. ++++
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 3467889999999998544 45 4444 88999999999999887766678999999999999998854 4554 8889
Q ss_pred ccCcEEEccCccCcCCCc--cccCCCCCCEEEccCCCCCc-cchhhhCC--CCCCeeecCCCCCCCCCchhhhcCC----
Q 047708 162 INLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSE-IPISFGRL--SHLRLLDLTDCDDLELIPRGVLSRL---- 232 (397)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~-lp~~i~~l--~~L~~L~l~~~~~~~~~~~~~~~~l---- 232 (397)
++|++|++++|.+....+ .++++++|++|++++|.++. .|..+..+ ++|+.|+++.|......|.. ++.+
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~~ 201 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD-WGKCMNPF 201 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC-CCSSSCTT
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc-hhhcCCcc
Confidence 999999999998876643 68899999999999988763 34455444 44555554443322222221 2222
Q ss_pred ----------------------------------------------------------------CCCCEEEeeccccccc
Q 047708 233 ----------------------------------------------------------------RKLEELYMSRSFHHWQ 248 (397)
Q Consensus 233 ----------------------------------------------------------------~~L~~L~l~~~~~~~~ 248 (397)
++|++|++++|.+.+
T Consensus 202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~- 280 (844)
T 3j0a_A 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS- 280 (844)
T ss_dssp TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-
T ss_pred ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc-
Confidence 345555555554443
Q ss_pred ccCCCccCccccccccCCCCCCCEEEEeccCCCCCC-Cccc-CCCccEEEEEecCcccchhhhHHHHhhhhccccccccc
Q 047708 249 FEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMS-SDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAM 326 (397)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~ 326 (397)
.....+..+++|+.|++++|.+..++ ..+. +++|+.|+++.|..... .+ ..+ ..+++|+
T Consensus 281 ----------~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~---~~~-----~~l~~L~ 341 (844)
T 3j0a_A 281 ----------LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-YS---SNF-----YGLPKVA 341 (844)
T ss_dssp ----------ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-CS---CSC-----SSCTTCC
T ss_pred ----------cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-CH---HHh-----cCCCCCC
Confidence 23456778899999999999966654 4566 89999999998864321 11 122 3378899
Q ss_pred ceec-ccccccchHH-HHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEeec
Q 047708 327 GLSQ-DMRISGVHSW-IKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLN 390 (397)
Q Consensus 327 ~L~l-~~~~~~lp~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~~ 390 (397)
.|++ ++.++.++.. +..+ ++|++|++++ +.++.++ .+++|+.|.+.+|. +..+|.
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~-N~l~~i~------~~~~L~~L~l~~N~-l~~l~~ 398 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFL-EKLQTLDLRD-NALTTIH------FIPSIPDIFLSGNK-LVTLPK 398 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSC-CCCCEEEEET-CCSCCCS------SCCSCSEEEEESCC-CCCCCC
T ss_pred EEECCCCCCCccChhhhcCC-CCCCEEECCC-CCCCccc------CCCCcchhccCCCC-cccccc
Confidence 9999 6677766643 3334 6899999987 4455443 47888888888773 455543
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=2.4e-23 Score=188.60 Aligned_cols=239 Identities=15% Similarity=0.136 Sum_probs=188.8
Q ss_pred ccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEE
Q 047708 91 KFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLS 168 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~ 168 (397)
.+++++.|++++|.+..++. .+ .+++|+.|++++|.+...++ +..+++|++|++++|.+..++ ..++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEEE
Confidence 45689999999999988764 33 88999999999999776665 789999999999999886554 348999999
Q ss_pred ccCccCcCCCccccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhh-cCCCCCCEEEeeccccc
Q 047708 169 LHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVL-SRLRKLEELYMSRSFHH 246 (397)
Q Consensus 169 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~ 246 (397)
+++|.+...++. .+++|++|++++|.++.++. .++.+++|++|++++ +.++.++...+ +.+++|++|++++|.+.
T Consensus 106 l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC-CCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 999988665543 47889999999999997754 788899999999999 55565544334 57899999999999987
Q ss_pred ccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccc
Q 047708 247 WQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRA 325 (397)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L 325 (397)
+ ......+++|++|++++|.+..+|..+. +++|+.|+++.|.... . + ..+. .+++|
T Consensus 183 ~-------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-l-~---~~~~-----~l~~L 239 (317)
T 3o53_A 183 D-------------VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-I-E---KALR-----FSQNL 239 (317)
T ss_dssp E-------------EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-E-C---TTCC-----CCTTC
T ss_pred c-------------cccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc-h-h---hHhh-----cCCCC
Confidence 5 1334458999999999999888888887 9999999999886542 1 1 1233 37889
Q ss_pred cceec-ccccc--cchHHHHHHHhhccceecccCCChhhh
Q 047708 326 MGLSQ-DMRIS--GVHSWIKNLLLRSEILALVDVNDLENI 362 (397)
Q Consensus 326 ~~L~l-~~~~~--~lp~~~~~~~~~L~~L~l~~c~~l~~l 362 (397)
+.|++ ++.+. .+|.++..+ ++|+.|++.++..++..
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~-~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKN-QRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTC-HHHHHHHHHHHHHHHSS
T ss_pred CEEEccCCCccCcCHHHHHhcc-ccceEEECCCchhccCC
Confidence 99999 66665 677787777 58999999877766654
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=184.96 Aligned_cols=193 Identities=20% Similarity=0.174 Sum_probs=152.5
Q ss_pred CceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCcc
Q 047708 95 LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCR 173 (397)
Q Consensus 95 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~ 173 (397)
.+.++..+.++..+|... .+.++.|++++|.+..++...|.++++|++|++++|.+..+ +..++++++|++|++++|.
T Consensus 9 ~~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp TTEEECCSSCCSSCCSSS-CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CcEEEeCCCCccccCCCc-cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 355677777788888754 36799999999998888877789999999999999999766 4578999999999999999
Q ss_pred CcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCC-CCchhhhcCCCCCCEEEeeccccccccc
Q 047708 174 RFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLE-LIPRGVLSRLRKLEELYMSRSFHHWQFE 250 (397)
Q Consensus 174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 250 (397)
+...++ .++.+++|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~-- 164 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI-- 164 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEE--
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCcccee--
Confidence 887775 89999999999999999998875 68999999999999954333 36766 89999999999999988762
Q ss_pred CCCccCccccccccCCCCCC----CEEEEeccCCCCCCCcc-cCCCccEEEEEec
Q 047708 251 GEEDSSSNAKFIELGSLSRL----TSLHIHIPNGKIMSSDM-SFQNLTSFSITIG 300 (397)
Q Consensus 251 ~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~ 300 (397)
....++.+++| ++|++++|....++... ...+|+.|++..+
T Consensus 165 ---------~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 210 (570)
T 2z63_A 165 ---------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210 (570)
T ss_dssp ---------CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred ---------cHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccc
Confidence 23445555555 67777777755544332 2335666666654
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=3.3e-22 Score=181.13 Aligned_cols=214 Identities=17% Similarity=0.135 Sum_probs=111.5
Q ss_pred CCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEcc
Q 047708 114 CPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLS 193 (397)
Q Consensus 114 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 193 (397)
+++|+.|++++|.+..+++..|..+++|++|++++|.+...+. +..+++|++|++++|.+...+ ..++|++|+++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~ 107 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAA 107 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCEEECC
Confidence 4456666666666555555455666666666666665543333 555666666666665543222 23556666666
Q ss_pred CCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCcccccccc-CCCCCCCE
Q 047708 194 KSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIEL-GSLSRLTS 272 (397)
Q Consensus 194 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~ 272 (397)
+|.++.++.. .+++|++|++++ +.++.++...++.+++|++|++++|.+.+. .+..+ ..+++|++
T Consensus 108 ~n~l~~~~~~--~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 108 NNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTV-----------NFAELAASSDTLEH 173 (317)
T ss_dssp SSCCSEEEEC--CCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCCCEE-----------EGGGGGGGTTTCCE
T ss_pred CCccCCcCcc--ccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCCCcc-----------cHHHHhhccCcCCE
Confidence 6665544432 245566666665 344444443355556666666666655441 12222 24556666
Q ss_pred EEEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccce
Q 047708 273 LHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEIL 351 (397)
Q Consensus 273 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L 351 (397)
|++++|.+..++....+++|+.|+++.|..... .+ .+.. +++|+.|++ ++.++.+|..+..+ ++|+.|
T Consensus 174 L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l-~~----~~~~-----l~~L~~L~L~~N~l~~l~~~~~~l-~~L~~L 242 (317)
T 3o53_A 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-GP----EFQS-----AAGVTWISLRNNKLVLIEKALRFS-QNLEHF 242 (317)
T ss_dssp EECTTSCCCEEECCCCCTTCCEEECCSSCCCEE-CG----GGGG-----GTTCSEEECTTSCCCEECTTCCCC-TTCCEE
T ss_pred EECCCCcCcccccccccccCCEEECCCCcCCcc-hh----hhcc-----cCcccEEECcCCcccchhhHhhcC-CCCCEE
Confidence 666666655554333355666666665543211 11 1222 555666666 55555555544443 456666
Q ss_pred ecccCC
Q 047708 352 ALVDVN 357 (397)
Q Consensus 352 ~l~~c~ 357 (397)
++++++
T Consensus 243 ~l~~N~ 248 (317)
T 3o53_A 243 DLRGNG 248 (317)
T ss_dssp ECTTCC
T ss_pred EccCCC
Confidence 666533
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=5.7e-20 Score=162.46 Aligned_cols=197 Identities=21% Similarity=0.328 Sum_probs=168.2
Q ss_pred cCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh-hcCcccCcEEEccCc
Q 047708 94 DLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS-LSFLINLRTLSLHDC 172 (397)
Q Consensus 94 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~ 172 (397)
+.+.++++++.++.+|..+. +.++.|++++|.+..++...|.++++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 46789999999998887553 6899999999998888887789999999999999999888765 478999999999999
Q ss_pred cCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccccc
Q 047708 173 RRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFE 250 (397)
Q Consensus 173 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 250 (397)
.+...++ .+..+++|++|++++|.++.+|. .+..+++|++|++++ +.++.+|...++.+++|++|++++|.+..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--- 171 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQLKR--- 171 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSC---
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcCcE---
Confidence 9877776 67899999999999999997764 578999999999999 67778887778899999999999998875
Q ss_pred CCCccCccccccccCCCCCCCEEEEeccCCCCCCCc-cc-CCCccEEEEEecCcc
Q 047708 251 GEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-MS-FQNLTSFSITIGDLA 303 (397)
Q Consensus 251 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~~~~~~ 303 (397)
.....+..+++|++|++++|.+..++.. +. +++|+.|+++.|+..
T Consensus 172 --------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 172 --------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp --------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred --------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 2234577889999999999998888775 55 899999999887743
No 62
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=2.4e-21 Score=171.49 Aligned_cols=153 Identities=25% Similarity=0.375 Sum_probs=69.0
Q ss_pred ccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEEEc
Q 047708 91 KFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSL 169 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l 169 (397)
.+++++.|++.++.+..++....+++|+.|++++|.+..++ .+..+++|++|++++|.+..++. .++.+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 44455555555555544444334455555555555444332 13444555555555554433332 2344444555555
Q ss_pred cCccCcCCCc-cccCCCCCCEEEccCCCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708 170 HDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH 246 (397)
Q Consensus 170 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 246 (397)
++|.+...++ .++.+++|++|++++|.++.+|.. ++.+++|++|++++ +.++.++...++.+++|++|++++|.+.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC-CCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 5444443333 234444444444444444443322 34444444444444 2333333333344444444444444443
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=6.9e-20 Score=162.52 Aligned_cols=209 Identities=21% Similarity=0.228 Sum_probs=164.9
Q ss_pred CccCCCCCccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-hh
Q 047708 81 VELKDWPSINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SS 157 (397)
Q Consensus 81 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~ 157 (397)
..+..+|.. -.++++.|++++|.+..++. .+ ++++|+.|++++|.+..++...|.++++|++|++++|.+..++ ..
T Consensus 17 ~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 17 LNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp SCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 334444542 23579999999999988665 33 8899999999999988888777889999999999999986654 57
Q ss_pred hcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCc--cchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCC
Q 047708 158 LSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSE--IPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRK 234 (397)
Q Consensus 158 ~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 234 (397)
+.++++|++|++++|.+....+ .++.+++|++|++++|.++. +|..+..+++|++|++++ +.++.++...+..+++
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHT
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCCHHHhhhhhh
Confidence 8889999999999998877766 78899999999999998885 688999999999999999 5666666544666666
Q ss_pred CC----EEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc-cc-CCCccEEEEEecCcc
Q 047708 235 LE----ELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-MS-FQNLTSFSITIGDLA 303 (397)
Q Consensus 235 L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~~~~~~ 303 (397)
|+ .|++++|.+.+ +........+|++|++++|.+..+|.. +. +++|+.|+++.|+..
T Consensus 175 L~~l~l~L~ls~n~l~~------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNF------------IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CTTCCEEEECCSSCCCE------------ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ccccceeeecCCCcccc------------cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 65 88999988875 222333345899999999998888776 45 899999999877654
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=1.5e-19 Score=171.45 Aligned_cols=246 Identities=17% Similarity=0.132 Sum_probs=132.9
Q ss_pred ccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCc
Q 047708 93 EDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDC 172 (397)
Q Consensus 93 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~ 172 (397)
++++.|++++|.+..++... ++|++|++++|.+..+|. ++++++|++|++++|.+..+|..+ .+|++|++++|
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n 183 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN 183 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC
Confidence 34444444444444333211 456666666666555552 466666666666666665555432 35666666666
Q ss_pred cCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCC
Q 047708 173 RRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGE 252 (397)
Q Consensus 173 ~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 252 (397)
.+.. +|.++.+++|++|++++|.++.+|... .+|++|++++| .++.+|. ++.+++|++|++++|.+.+ +|
T Consensus 184 ~l~~-l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~-l~-- 253 (454)
T 1jl5_A 184 QLEE-LPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKT-LP-- 253 (454)
T ss_dssp CCSS-CCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSS-CC--
T ss_pred cCCc-CccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCc-cc--
Confidence 5544 335666666666666666666555432 36666666663 4446663 6677777777777776654 11
Q ss_pred CccCccccccccCCCCCCCEEEEeccCCCCCCCcccCCCccEEEEEecCcccc-hhhhH----------HHHhhhhcccc
Q 047708 253 EDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAG-FISAA----------IEVFSRKFKKR 321 (397)
Q Consensus 253 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~----------~~~l~~~~~~~ 321 (397)
. .+++|++|++++|.+..+|.. +++|+.|+++.|....- ..+.. +..++. .
T Consensus 254 ---------~---~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~----~ 315 (454)
T 1jl5_A 254 ---------D---LPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD----L 315 (454)
T ss_dssp ---------S---CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECC----C
T ss_pred ---------c---cccccCEEECCCCcccccCcc--cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccC----C
Confidence 1 124555555555554444432 24455555544432210 00000 000111 1
Q ss_pred cccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708 322 CSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN 383 (397)
Q Consensus 322 ~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~ 383 (397)
+.+|+.|++ ++.+..+|..+ ++|++|++++| .++.++. .+++|++|++++|+
T Consensus 316 ~~~L~~L~Ls~N~l~~lp~~~----~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 316 PPSLEELNVSNNKLIELPALP----PRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP 368 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCC----TTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC
T ss_pred cCcCCEEECCCCccccccccC----CcCCEEECCCC-ccccccc-----hhhhccEEECCCCC
Confidence 246777777 66666666542 57888888774 5665552 46788888888875
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=1.3e-19 Score=177.22 Aligned_cols=238 Identities=18% Similarity=0.134 Sum_probs=196.5
Q ss_pred cCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCcc
Q 047708 94 DLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCR 173 (397)
Q Consensus 94 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 173 (397)
+++.++++++.++.+|..+. ++|+.|++++|.+..+|. .+++|++|++++|.+..+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 47899999999999887665 899999999999888886 67999999999999988887 78999999999999
Q ss_pred CcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCC
Q 047708 174 RFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEE 253 (397)
Q Consensus 174 ~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 253 (397)
+...++ .+++|+.|++++|.++.+|.. +++|++|++++ +.++.+|. .+++|+.|++.+|.+.+
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~-N~l~~l~~----~~~~L~~L~L~~N~l~~------ 175 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPA----LPSELCKLWAYNNQLTS------ 175 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSC------
T ss_pred CCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcC-CcCCCcCC----ccCCCCEEECCCCCCCC------
Confidence 876655 678999999999999999874 48999999999 56677764 35789999999999875
Q ss_pred ccCccccccccCCCCCCCEEEEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-cc
Q 047708 254 DSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DM 332 (397)
Q Consensus 254 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~ 332 (397)
++ ..+++|+.|++++|.+..+|.. +++|+.|+++.|.... ++. .+++|+.|++ ++
T Consensus 176 ------l~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~---------l~~----~~~~L~~L~Ls~N 231 (622)
T 3g06_A 176 ------LP---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTS---------LPA----LPSGLKELIVSGN 231 (622)
T ss_dssp ------CC---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSS---------CCC----CCTTCCEEECCSS
T ss_pred ------Cc---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccc---------cCC----CCCCCCEEEccCC
Confidence 22 4578999999999998887753 5789999998776432 111 2578999999 78
Q ss_pred ccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccCCceEeecC
Q 047708 333 RISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKCLLNS 391 (397)
Q Consensus 333 ~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~i~~~ 391 (397)
.++.+|.. +++|++|+|++ +.++.++. .+++|+.|++++| .++.+|.+
T Consensus 232 ~L~~lp~~----l~~L~~L~Ls~-N~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~ 279 (622)
T 3g06_A 232 RLTSLPVL----PSELKELMVSG-NRLTSLPM-----LPSGLLSLSVYRN-QLTRLPES 279 (622)
T ss_dssp CCSCCCCC----CTTCCEEECCS-SCCSCCCC-----CCTTCCEEECCSS-CCCSCCGG
T ss_pred ccCcCCCC----CCcCcEEECCC-CCCCcCCc-----ccccCcEEeCCCC-CCCcCCHH
Confidence 88888822 26999999998 57777762 6799999999998 67788764
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=3.4e-19 Score=168.92 Aligned_cols=262 Identities=18% Similarity=0.129 Sum_probs=167.6
Q ss_pred ccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCc
Q 047708 93 EDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDC 172 (397)
Q Consensus 93 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~ 172 (397)
+++++|++++|.+..+|...++++|+.|++++|.+..+|.. ..+|++|++++|.+..+| .++.+++|++|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence 68999999999999998655899999999999997777642 458999999999998887 5899999999999999
Q ss_pred cCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCC
Q 047708 173 RRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGE 252 (397)
Q Consensus 173 ~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 252 (397)
.+.+.+... ++|++|++++|.++.+| .++.+++|++|++++ +.++.+|.. +++|++|++++|.+.+ +|..
T Consensus 206 ~l~~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~-N~l~~l~~~----~~~L~~L~l~~N~l~~-l~~~ 275 (454)
T 1jl5_A 206 SLKKLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADN-NLLKTLPDL----PPSLEALNVRDNYLTD-LPEL 275 (454)
T ss_dssp CCSSCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS-SCCSSCCSC----CTTCCEEECCSSCCSC-CCCC
T ss_pred cCCcCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCC-CcCCccccc----ccccCEEECCCCcccc-cCcc
Confidence 886644322 58899999999888888 488899999999988 556666642 4778888888887765 2211
Q ss_pred CccC-----ccccccccC-CCCCCCEEEEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhhccccccccc
Q 047708 253 EDSS-----SNAKFIELG-SLSRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAM 326 (397)
Q Consensus 253 ~~~~-----~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~ 326 (397)
...- ....+..+. -.++|+.|++++|.+..++.. .++|+.|+++.|.... ++ ..+++|+
T Consensus 276 ~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~--~~~L~~L~Ls~N~l~~---------lp----~~~~~L~ 340 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIE---------LP----ALPPRLE 340 (454)
T ss_dssp CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCC--CTTCCEEECCSSCCSC---------CC----CCCTTCC
T ss_pred cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCC--cCcCCEEECCCCcccc---------cc----ccCCcCC
Confidence 0000 000000000 013555555555554433211 2578888887765432 11 1257899
Q ss_pred ceec-ccccccchHHHHHHHhhccceecccCCChhh---hhhccccCCC-------------CCccEEEEeccCCce--E
Q 047708 327 GLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLEN---IVSDLANDGF-------------NELMFLGIFGCNEMK--C 387 (397)
Q Consensus 327 ~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~---l~~~~~~~~~-------------~~L~~L~i~~c~~L~--~ 387 (397)
.|++ ++.++.+|. .+++|++|+++++ .+.. +|..+ +.+ ++|+.|++++++--. .
T Consensus 341 ~L~L~~N~l~~lp~----~l~~L~~L~L~~N-~l~~l~~ip~~l--~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~ 413 (454)
T 1jl5_A 341 RLIASFNHLAEVPE----LPQNLKQLHVEYN-PLREFPDIPESV--EDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD 413 (454)
T ss_dssp EEECCSSCCSCCCC----CCTTCCEEECCSS-CCSSCCCCCTTC--CEEECCC---------------------------
T ss_pred EEECCCCccccccc----hhhhccEEECCCC-CCCcCCCChHHH--HhhhhcccccccccccCcCCEEECCCCcCCcccc
Confidence 9999 788888987 2379999999984 4544 33222 233 889999999986444 5
Q ss_pred eecC
Q 047708 388 LLNS 391 (397)
Q Consensus 388 i~~~ 391 (397)
+|.+
T Consensus 414 iP~s 417 (454)
T 1jl5_A 414 IPES 417 (454)
T ss_dssp ----
T ss_pred chhh
Confidence 6654
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=5e-19 Score=156.38 Aligned_cols=189 Identities=24% Similarity=0.368 Sum_probs=161.2
Q ss_pred cCCccCCCCCccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh
Q 047708 79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS 156 (397)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 156 (397)
.+..+..+|.. ..++++.|+++++.+..++.. + ++++|+.|++++|.+..++..+|..+++|++|++++|.+..+|.
T Consensus 24 ~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 102 (270)
T 2o6q_A 24 SSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI 102 (270)
T ss_dssp TTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT
T ss_pred cCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH
Confidence 34455555543 346799999999999997753 3 89999999999999999999888999999999999999987765
Q ss_pred -hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCC
Q 047708 157 -SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLR 233 (397)
Q Consensus 157 -~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 233 (397)
.+..+++|++|++++|.+...++ .+..+++|++|++++|.++.+|.. +..+++|++|++++ +.++.++...+..++
T Consensus 103 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~ 181 (270)
T 2o6q_A 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLT 181 (270)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCT
T ss_pred hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCC
Confidence 56889999999999999988776 689999999999999999988764 78999999999999 677778877688999
Q ss_pred CCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCC
Q 047708 234 KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNG 280 (397)
Q Consensus 234 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 280 (397)
+|++|++++|.+... ....+..+++|+.|++++|..
T Consensus 182 ~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 182 ELKTLKLDNNQLKRV-----------PEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCCEEECCSSCCSCC-----------CTTTTTTCTTCCEEECCSSCB
T ss_pred CcCEEECCCCcCCcC-----------CHHHhccccCCCEEEecCCCe
Confidence 999999999988752 234577889999999999874
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=2e-22 Score=182.09 Aligned_cols=55 Identities=20% Similarity=0.128 Sum_probs=36.5
Q ss_pred cccccceec-ccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708 322 CSRAMGLSQ-DMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN 383 (397)
Q Consensus 322 ~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~ 383 (397)
+++|+.|++ ++.++.+|.++. ++|++|++++ +.++.++. ...+++|++|++++++
T Consensus 252 l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~-N~l~~~p~---~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSY-NRLDRNPS---PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTCCEEECTTSCCSSCCSSCC---SEEEEEECCS-SCCCSCCC---TTTSCEEEEEECTTCT
T ss_pred cCCCCEEECCCCccChhhhhcc---CCceEEECCC-CCCCCChh---HhhCCCCCEEeccCCC
Confidence 344555555 445555665554 4888888887 56777652 4578888888888875
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=1.4e-20 Score=180.06 Aligned_cols=232 Identities=15% Similarity=0.102 Sum_probs=177.4
Q ss_pred ccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEE
Q 047708 91 KFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLS 168 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~ 168 (397)
.+++++.|++++|.+..+++ .+ .+++|+.|++++|.+...++ +..+++|++|++++|.+..+|. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 45689999999999988654 33 88999999999999776655 7899999999999998866553 37899999
Q ss_pred ccCccCcCCCccccCCCCCCEEEccCCCCCcc-chhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccc
Q 047708 169 LHDCRRFGDLPLIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHW 247 (397)
Q Consensus 169 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 247 (397)
+++|.+...++. .+++|++|++++|.++.+ |..++.+++|++|++++|...+..|..+.+.+++|++|++++|.+.+
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 999988666543 468899999999998865 55788899999999999444333454433478999999999999875
Q ss_pred cccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhccccccccc
Q 047708 248 QFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAM 326 (397)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~ 326 (397)
. .....+++|+.|++++|.+..+|..+. +++|+.|+++.|.... . + ..+.. +++|+
T Consensus 184 ~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-l-p---~~l~~-----l~~L~ 240 (487)
T 3oja_A 184 V-------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-I-E---KALRF-----SQNLE 240 (487)
T ss_dssp E-------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-E-C---TTCCC-----CTTCC
T ss_pred c-------------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-c-c---hhhcc-----CCCCC
Confidence 2 334468899999999999888888877 8999999998876542 1 1 12222 67888
Q ss_pred ceec-ccccc--cchHHHHHHHhhccceecc
Q 047708 327 GLSQ-DMRIS--GVHSWIKNLLLRSEILALV 354 (397)
Q Consensus 327 ~L~l-~~~~~--~lp~~~~~~~~~L~~L~l~ 354 (397)
.|++ ++.+. .+|.++..+ +.|+.+++.
T Consensus 241 ~L~l~~N~l~c~~~~~~~~~l-~~L~~l~~~ 270 (487)
T 3oja_A 241 HFDLRGNGFHCGTLRDFFSKN-QRVQTVAKQ 270 (487)
T ss_dssp EEECTTCCBCHHHHHHHHTTC-HHHHHHHHH
T ss_pred EEEcCCCCCcCcchHHHHHhC-CCCcEEecc
Confidence 8888 55555 667777665 477777765
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=7.4e-19 Score=155.45 Aligned_cols=222 Identities=18% Similarity=0.260 Sum_probs=171.8
Q ss_pred ccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEcc
Q 047708 91 KFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLH 170 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 170 (397)
.+.++..+++..+.+.+......+++|+.|++++|.+..++. +..+++|++|++++|.+..++ .++.+++|++|+++
T Consensus 17 ~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 17 AFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECT
T ss_pred hHHHHHHHHhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECC
Confidence 444555566666666655444477899999999998777765 688999999999999987764 68889999999999
Q ss_pred CccCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccc
Q 047708 171 DCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQ 248 (397)
Q Consensus 171 ~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 248 (397)
+|.+...++ .+..+++|++|++++|.++.+|. .++.+++|++|++++ +.++.++...++.+++|++|++++|.+.+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 171 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDLSYNQLQS- 171 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC-CccCccCHHHhccCccCCEEECCCCCcCc-
Confidence 999877766 57899999999999999987765 468899999999999 46777777767889999999999998875
Q ss_pred ccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc-cc-CCCccEEEEEecCcccchhhhHHHHhhhhccccccccc
Q 047708 249 FEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-MS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAM 326 (397)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~ 326 (397)
.....++.+++|++|++++|.+..++.. +. +++|+.|+++.|+.... ++.++
T Consensus 172 ----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----------------~~~l~ 225 (272)
T 3rfs_A 172 ----------LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----------------CPGIR 225 (272)
T ss_dssp ----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC----------------TTTTH
T ss_pred ----------cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc----------------CcHHH
Confidence 2234467889999999999997777665 56 89999999988765432 55677
Q ss_pred ceec--ccccccchHHHHH
Q 047708 327 GLSQ--DMRISGVHSWIKN 343 (397)
Q Consensus 327 ~L~l--~~~~~~lp~~~~~ 343 (397)
.+.+ +...+.+|.+++.
T Consensus 226 ~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 226 YLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp HHHHHHHHTGGGBBCTTSC
T ss_pred HHHHHHHhCCCcccCcccc
Confidence 7766 3333467765543
No 71
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=1.2e-19 Score=179.90 Aligned_cols=121 Identities=22% Similarity=0.244 Sum_probs=102.3
Q ss_pred cCCccCCCCC--ccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC
Q 047708 79 AGVELKDWPS--INKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL 154 (397)
Q Consensus 79 ~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 154 (397)
.++.+..++. ...+++|++|++++|.++.+++. + ++++|++|++++|.+..++...|.++++|++|++++|.+..+
T Consensus 60 s~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l 139 (635)
T 4g8a_A 60 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 139 (635)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCS
T ss_pred eCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCC
Confidence 3455555543 46789999999999999998764 3 899999999999999999998899999999999999999877
Q ss_pred Ch-hhcCcccCcEEEccCccCcCC--CccccCCCCCCEEEccCCCCCc
Q 047708 155 PS-SLSFLINLRTLSLHDCRRFGD--LPLIGELSLLEILDLSKSDVSE 199 (397)
Q Consensus 155 ~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~ 199 (397)
|. .++++++|++|++++|.+... +..++.+++|++|++++|.++.
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 140 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 65 589999999999999998654 2378889999999999887653
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=8.2e-19 Score=157.97 Aligned_cols=186 Identities=21% Similarity=0.236 Sum_probs=161.9
Q ss_pred cCCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhh
Q 047708 79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSL 158 (397)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~ 158 (397)
.+..+..++....+++|+.|++++|.+..++....+++|+.|++++|.+..++. +..+++|++|++++|.+..++. +
T Consensus 49 ~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-l 125 (308)
T 1h6u_A 49 FGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP-L 125 (308)
T ss_dssp TTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCCCCCGG-G
T ss_pred eCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCCCCCCchh-h
Confidence 345566677788899999999999999998875589999999999999888763 7899999999999999988765 8
Q ss_pred cCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEE
Q 047708 159 SFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEEL 238 (397)
Q Consensus 159 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 238 (397)
..+++|++|++++|.+...+ .+..+++|++|++++|.++.++. +..+++|++|++++ +.++.++. +..+++|++|
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L 200 (308)
T 1h6u_A 126 AGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD-NKISDISP--LASLPNLIEV 200 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCCEE
T ss_pred cCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCC-CccCcChh--hcCCCCCCEE
Confidence 99999999999999986554 48899999999999999998876 89999999999999 66777776 8899999999
Q ss_pred EeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCC
Q 047708 239 YMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSS 285 (397)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 285 (397)
++++|.+.+. ..+..+++|+.|++++|.+...|.
T Consensus 201 ~L~~N~l~~~-------------~~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 201 HLKNNQISDV-------------SPLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp ECTTSCCCBC-------------GGGTTCTTCCEEEEEEEEEECCCE
T ss_pred EccCCccCcc-------------ccccCCCCCCEEEccCCeeecCCe
Confidence 9999998751 247889999999999998766553
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=2.6e-19 Score=158.75 Aligned_cols=216 Identities=19% Similarity=0.187 Sum_probs=169.3
Q ss_pred eEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEEEccCccCc
Q 047708 97 GISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSLHDCRRF 175 (397)
Q Consensus 97 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~ 175 (397)
.++..+..+..+|..+ .+.|+.|++++|.+..++...|.++++|++|++++|.+..++. .+..+++|++|++++|.+.
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 4455556677777654 2579999999999888887778999999999999999976654 7889999999999999997
Q ss_pred CCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCC--CchhhhcCCCCCCEEEeecccccccccC
Q 047708 176 GDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLEL--IPRGVLSRLRKLEELYMSRSFHHWQFEG 251 (397)
Q Consensus 176 ~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 251 (397)
..++ .+..+++|++|++++|.+..++. .++.+++|++|++++ +.++. +|.. ++.+++|++|++++|.+.+..
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~-- 165 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY-- 165 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC--
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC-CccceecCchh-hccCCCCCEEECCCCCCCcCC--
Confidence 7775 78999999999999999997765 689999999999999 45554 5655 899999999999999987622
Q ss_pred CCccCccccccccCCCCCCC----EEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhccccccccc
Q 047708 252 EEDSSSNAKFIELGSLSRLT----SLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAM 326 (397)
Q Consensus 252 ~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~ 326 (397)
...+..+++|+ +|++++|.+..++.... ..+|+.|+++.|..... +...+..+++|+
T Consensus 166 ---------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~ 227 (276)
T 2z62_A 166 ---------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV---------PDGIFDRLTSLQ 227 (276)
T ss_dssp ---------GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCC---------CTTTTTTCCSCC
T ss_pred ---------HHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeec---------CHhHhccccccc
Confidence 23344444454 89999999888877655 67899999998874321 112223377888
Q ss_pred ceec-ccccc
Q 047708 327 GLSQ-DMRIS 335 (397)
Q Consensus 327 ~L~l-~~~~~ 335 (397)
.|++ ++.+.
T Consensus 228 ~L~l~~N~~~ 237 (276)
T 2z62_A 228 KIWLHTNPWD 237 (276)
T ss_dssp EEECCSSCBC
T ss_pred EEEccCCccc
Confidence 8888 44443
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=1.7e-19 Score=156.41 Aligned_cols=201 Identities=13% Similarity=0.213 Sum_probs=159.9
Q ss_pred cCCCCCccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCC-CcccChhhhcCCCcccEEEcCC-CCCCCCC-hh
Q 047708 83 LKDWPSINKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENS-LLVIPDRFFQGMKDLKVLDMGG-IRGFSLP-SS 157 (397)
Q Consensus 83 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~l~-~~ 157 (397)
+..+|. ..++++.|++++|.++.++.. + ++++|+.|++++|. +..++...|.++++|++|++++ +.+..++ ..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 555555 345799999999999987763 3 88999999999997 8888887789999999999998 8887765 46
Q ss_pred hcCcccCcEEEccCccCcCCCccccCCCCCC---EEEccCC-CCCccch-hhhCCCCCC-eeecCCCCCCCCCchhhhcC
Q 047708 158 LSFLINLRTLSLHDCRRFGDLPLIGELSLLE---ILDLSKS-DVSEIPI-SFGRLSHLR-LLDLTDCDDLELIPRGVLSR 231 (397)
Q Consensus 158 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~lp~-~i~~l~~L~-~L~l~~~~~~~~~~~~~~~~ 231 (397)
+..+++|++|++++|.+...+ .+..+++|+ +|++++| .++.+|. .+..+++|+ +|++++ +.++.+|...+..
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFP-DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNG 178 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCC-CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTT
T ss_pred hCCCCCCCEEeCCCCCCcccc-ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCC
Confidence 788999999999999886644 477788887 9999999 8888775 478899999 999988 5667888775555
Q ss_pred CCCCCEEEeeccc-ccccccCCCccCccccccccCCC-CCCCEEEEeccCCCCCCCcccCCCccEEEEEec
Q 047708 232 LRKLEELYMSRSF-HHWQFEGEEDSSSNAKFIELGSL-SRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIG 300 (397)
Q Consensus 232 l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 300 (397)
++|++|++++|. +.. .....+..+ ++|+.|++++|.+..+|.. .+++|+.|.+..+
T Consensus 179 -~~L~~L~L~~n~~l~~-----------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 179 -TKLDAVYLNKNKYLTV-----------IDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIARNT 236 (239)
T ss_dssp -CEEEEEECTTCTTCCE-----------ECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECTTC
T ss_pred -CCCCEEEcCCCCCccc-----------CCHHHhhccccCCcEEECCCCccccCChh-HhccCceeeccCc
Confidence 889999999985 653 123456777 8999999999998888765 5788888877643
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=2.9e-20 Score=177.92 Aligned_cols=236 Identities=15% Similarity=0.106 Sum_probs=185.8
Q ss_pred CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEc
Q 047708 113 ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDL 192 (397)
Q Consensus 113 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 192 (397)
.+++|+.|++++|.+..+++..|..+++|++|++++|.+...++ ++.+++|++|++++|.+...+ ..++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC----CCCCcCEEEC
Confidence 45689999999999888887778999999999999999966554 899999999999999875443 3489999999
Q ss_pred cCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccC-CCCCCC
Q 047708 193 SKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELG-SLSRLT 271 (397)
Q Consensus 193 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~ 271 (397)
++|.+..++.. .+++|++|++++ +.++.+++..++.+++|++|++++|.+.+. .+..+. .+++|+
T Consensus 107 ~~N~l~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~l~~~l~~L~ 172 (487)
T 3oja_A 107 ANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTV-----------NFAELAASSDTLE 172 (487)
T ss_dssp CSSCCCCEEEC--CCSSCEEEECCS-SCCCSGGGBCGGGGSSEEEEECTTSCCCEE-----------EGGGGGGGTTTCC
T ss_pred cCCcCCCCCcc--ccCCCCEEECCC-CCCCCCCchhhcCCCCCCEEECCCCCCCCc-----------ChHHHhhhCCccc
Confidence 99999987653 578999999999 556666554488999999999999999873 344554 689999
Q ss_pred EEEEeccCCCCCCCcccCCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhccc
Q 047708 272 SLHIHIPNGKIMSSDMSFQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSEI 350 (397)
Q Consensus 272 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~~ 350 (397)
+|++++|.+..++....+++|+.|+++.|.... .++ .+.. +++|+.|++ ++.+..+|.++..+ ++|+.
T Consensus 173 ~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~----~~~~-----l~~L~~L~Ls~N~l~~lp~~l~~l-~~L~~ 241 (487)
T 3oja_A 173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGP----EFQS-----AAGVTWISLRNNKLVLIEKALRFS-QNLEH 241 (487)
T ss_dssp EEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-ECG----GGGG-----GTTCSEEECTTSCCCEECTTCCCC-TTCCE
T ss_pred EEecCCCccccccccccCCCCCEEECCCCCCCC-CCH----hHcC-----CCCccEEEecCCcCcccchhhccC-CCCCE
Confidence 999999998888765559999999999887542 222 2333 788999999 88888888877665 69999
Q ss_pred eecccCCCh-hhhhhccccCCCCCccEEEEe
Q 047708 351 LALVDVNDL-ENIVSDLANDGFNELMFLGIF 380 (397)
Q Consensus 351 L~l~~c~~l-~~l~~~~~~~~~~~L~~L~i~ 380 (397)
|++++++-. ..++. ....++.|+.+.+.
T Consensus 242 L~l~~N~l~c~~~~~--~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 242 FDLRGNGFHCGTLRD--FFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECTTCCBCHHHHHH--HHTTCHHHHHHHHH
T ss_pred EEcCCCCCcCcchHH--HHHhCCCCcEEecc
Confidence 999986544 13322 22356666666654
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=2.7e-18 Score=149.93 Aligned_cols=174 Identities=22% Similarity=0.306 Sum_probs=117.4
Q ss_pred cCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccCc
Q 047708 94 DLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHDC 172 (397)
Q Consensus 94 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~ 172 (397)
..+.+++.++.+..+|..+. +.++.|++++|.+..++...|.++++|++|++++|.+..++ ..+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 34667777777777776553 57777788777777666666677777777777777775543 34667777777777777
Q ss_pred cCcCCCc-cccCCCCCCEEEccCCCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccccc
Q 047708 173 RRFGDLP-LIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFE 250 (397)
Q Consensus 173 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 250 (397)
.+...++ .+..+++|++|++++|.++.+|.. +..+++|++|++++ +.++.++...++.+++|++|++++|.+.+
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--- 169 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQS--- 169 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSC---
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCCc---
Confidence 7766555 566777777777777777766653 46677777777777 45566665546667777777777776654
Q ss_pred CCCccCccccccccCCCCCCCEEEEeccCC
Q 047708 251 GEEDSSSNAKFIELGSLSRLTSLHIHIPNG 280 (397)
Q Consensus 251 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 280 (397)
.....+..+++|+.|++++|.+
T Consensus 170 --------~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 170 --------VPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp --------CCTTTTTTCTTCCEEECCSCCB
T ss_pred --------cCHHHHhCCCCCCEEEeeCCce
Confidence 1123455566666666666654
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=1.8e-18 Score=154.33 Aligned_cols=177 Identities=26% Similarity=0.298 Sum_probs=131.2
Q ss_pred CCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcE
Q 047708 87 PSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRT 166 (397)
Q Consensus 87 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 166 (397)
.....+++++.|++.++.+..++....+++|+.|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++
T Consensus 40 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred cchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 3344677888888888888877765578888888888888777766 6788888888888888766654 777888888
Q ss_pred EEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708 167 LSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH 246 (397)
Q Consensus 167 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 246 (397)
|++++|.+.. ++.+..+++|++|++++|.++.+ ..+..+++|++|++++ +.++.++. ++.+++|++|++++|.+.
T Consensus 117 L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 117 LSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCC-ChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccccchh--hcCCCccCEEECCCCcCC
Confidence 8888887754 36677788888888888877776 4677788888888887 45566655 777888888888877765
Q ss_pred ccccCCCccCccccccccCCCCCCCEEEEeccCCCCCC
Q 047708 247 WQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMS 284 (397)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 284 (397)
. +..+..+++|+.|++++|.+...|
T Consensus 192 ~-------------l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 D-------------LRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp B-------------CGGGTTCTTCSEEEEEEEEEECCC
T ss_pred C-------------ChhhccCCCCCEEECcCCcccCCc
Confidence 4 234677777888888777654433
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=8.5e-20 Score=164.84 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=35.5
Q ss_pred CCcccEEEcCCCCCC-CCChhh--cCcccCcEEEccCccCcCCCccccCC-----CCCCEEEccCCCCCccc-hhhhCCC
Q 047708 138 MKDLKVLDMGGIRGF-SLPSSL--SFLINLRTLSLHDCRRFGDLPLIGEL-----SLLEILDLSKSDVSEIP-ISFGRLS 208 (397)
Q Consensus 138 l~~L~~L~l~~~~~~-~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~lp-~~i~~l~ 208 (397)
+++|++|++++|.+. .+|..+ +.+++|++|++++|.+...++.++.+ ++|++|++++|.+..++ ..++.++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 444444444444442 334333 44444444444444444432233333 44444444444444333 3444444
Q ss_pred CCCeeecCC
Q 047708 209 HLRLLDLTD 217 (397)
Q Consensus 209 ~L~~L~l~~ 217 (397)
+|++|++++
T Consensus 174 ~L~~L~Ls~ 182 (312)
T 1wwl_A 174 ALSTLDLSD 182 (312)
T ss_dssp SCCEEECCS
T ss_pred CCCEEECCC
Confidence 444444444
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=4e-18 Score=152.00 Aligned_cols=186 Identities=20% Similarity=0.130 Sum_probs=160.0
Q ss_pred CCccCCCCCccccccCceEEccCCCcccCCC-cC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh
Q 047708 80 GVELKDWPSINKFEDLTGISLMFNDIHEVPD-EL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS 157 (397)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~ 157 (397)
+..+..+|.. -.++++.|++++|.+..++. .+ .+++|+.|++++|.+..++.. ..+++|++|++++|.+..+|..
T Consensus 19 ~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~ 95 (290)
T 1p9a_G 19 KRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLL 95 (290)
T ss_dssp TSCCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSSCCCC
T ss_pred CCCCCcCCCC-CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCcCchh
Confidence 4455555543 34789999999999988643 33 899999999999998887763 7899999999999999999999
Q ss_pred hcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCCCC
Q 047708 158 LSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKL 235 (397)
Q Consensus 158 ~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 235 (397)
+..+++|++|++++|.+...++ .+..+++|++|++++|.++.+|.. +..+++|++|++++ +.++.+|...+..+++|
T Consensus 96 ~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENL 174 (290)
T ss_dssp TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTC
T ss_pred hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCC
Confidence 9999999999999999988876 799999999999999999988764 67899999999999 67888998878899999
Q ss_pred CEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCC
Q 047708 236 EELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGK 281 (397)
Q Consensus 236 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 281 (397)
++|++++|.+.. ++..+..+.+|+.|++++|...
T Consensus 175 ~~L~L~~N~l~~------------ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 175 DTLLLQENSLYT------------IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CEEECCSSCCCC------------CCTTTTTTCCCSEEECCSCCBC
T ss_pred CEEECCCCcCCc------------cChhhcccccCCeEEeCCCCcc
Confidence 999999999873 4566667789999999998843
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=3.9e-19 Score=154.17 Aligned_cols=182 Identities=18% Similarity=0.193 Sum_probs=130.9
Q ss_pred CcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCC-CCCCCh-hhcCcccCcEEEccC-ccCcCCCc-
Q 047708 104 DIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIR-GFSLPS-SLSFLINLRTLSLHD-CRRFGDLP- 179 (397)
Q Consensus 104 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~-~~~~l~~L~~L~l~~-~~~~~~~~- 179 (397)
.++.+|. -.+.|+.|++++|.+..++...|..+++|++|++++|. +..++. .+.++++|++|++++ |.+...++
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 4666776 34588899999999888888778889999999999986 776654 678888899999988 77766655
Q ss_pred cccCCCCCCEEEccCCCCCccchhhhCCCCCC---eeecCCCCCCCCCchhhhcCCCCCC-EEEeecccccccccCCCcc
Q 047708 180 LIGELSLLEILDLSKSDVSEIPISFGRLSHLR---LLDLTDCDDLELIPRGVLSRLRKLE-ELYMSRSFHHWQFEGEEDS 255 (397)
Q Consensus 180 ~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~---~L~l~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~ 255 (397)
.+..+++|++|++++|.++.+|. +..+++|+ +|++++|..++.++...++.+++|+ +|++++|.+.. +
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i------ 171 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-V------ 171 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-E------
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-c------
Confidence 67888888888888888888876 77777777 8888885477777776677778888 88887777652 2
Q ss_pred CccccccccCCCCCCCEEEEeccC-CCCCCCc-cc-C-CCccEEEEEec
Q 047708 256 SSNAKFIELGSLSRLTSLHIHIPN-GKIMSSD-MS-F-QNLTSFSITIG 300 (397)
Q Consensus 256 ~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~-~~-~-~~L~~L~l~~~ 300 (397)
.......++|++|++++|. +..++.. +. + ++|+.|+++.+
T Consensus 172 -----~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 172 -----QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp -----CTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred -----CHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 1111122567777777773 5555433 33 4 56666655543
No 81
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.2e-18 Score=155.42 Aligned_cols=191 Identities=19% Similarity=0.254 Sum_probs=160.1
Q ss_pred ccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEcc
Q 047708 91 KFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLH 170 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 170 (397)
.+.++..+.+....+.++.....+++|+.|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|+++
T Consensus 22 ~l~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 22 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECC
Confidence 344444555666666655444478899999999999888865 6889999999999999988877 9999999999999
Q ss_pred CccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccccc
Q 047708 171 DCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFE 250 (397)
Q Consensus 171 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 250 (397)
+|.+.. ++.+..+++|++|++++|.++.++ .+..+++|++|++++ +.++.++. ++.+++|++|++++|.+.+.
T Consensus 99 ~n~l~~-~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~L~~N~l~~~-- 171 (291)
T 1h6t_A 99 ENKVKD-LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQISDI-- 171 (291)
T ss_dssp SSCCCC-GGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCCCC--
T ss_pred CCcCCC-ChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccC-CcCCcchh--hccCCCCCEEEccCCccccc--
Confidence 999855 557999999999999999999874 688999999999999 56676743 89999999999999998752
Q ss_pred CCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcc
Q 047708 251 GEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLA 303 (397)
Q Consensus 251 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~ 303 (397)
..+..+++|+.|++++|.+..++. +. +++|+.|+++.|...
T Consensus 172 -----------~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 172 -----------VPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -----------GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred -----------hhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCccc
Confidence 228889999999999999888875 66 999999999988754
No 82
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=3.3e-19 Score=169.93 Aligned_cols=178 Identities=19% Similarity=0.109 Sum_probs=86.7
Q ss_pred cCceEEccCCCccc-----CCCcC-CCCCccEEEccCCCCcccCh-----hhhcCCCcccEEEcCCCCCCC-----CChh
Q 047708 94 DLTGISLMFNDIHE-----VPDEL-ECPKLQALLLQENSLLVIPD-----RFFQGMKDLKVLDMGGIRGFS-----LPSS 157 (397)
Q Consensus 94 ~l~~l~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~~-----~~~~~l~~L~~L~l~~~~~~~-----l~~~ 157 (397)
++++|++++|.+.. ++..+ .+++|+.|++++|.+.+... .++...++|++|++++|.+.. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 46666666666552 23333 55666666666665432211 112234456666666665532 2334
Q ss_pred hcCcccCcEEEccCccCcCCCc-ccc-----CCCCCCEEEccCCCCCc-----cchhhhCCCCCCeeecCCCCCCCCC--
Q 047708 158 LSFLINLRTLSLHDCRRFGDLP-LIG-----ELSLLEILDLSKSDVSE-----IPISFGRLSHLRLLDLTDCDDLELI-- 224 (397)
Q Consensus 158 ~~~l~~L~~L~l~~~~~~~~~~-~~~-----~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~~-- 224 (397)
+..+++|++|++++|.+..... .+. ..++|++|++++|.++. ++..+..+++|++|++++| .++..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~ 244 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGM 244 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHH
Confidence 4455666666666665432211 111 24466666666665553 3455555666666666663 23221
Q ss_pred ---chhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccC
Q 047708 225 ---PRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPN 279 (397)
Q Consensus 225 ---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 279 (397)
+......+++|++|++++|.++..- ...+...+..+++|++|++++|.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~-------~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKG-------CGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHH-------HHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHH-------HHHHHHHHhhCCCcceEECCCCC
Confidence 1222224556666666665554310 00123334445555555555554
No 83
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=1.7e-17 Score=140.64 Aligned_cols=173 Identities=23% Similarity=0.353 Sum_probs=114.7
Q ss_pred ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh-hcCcccCcEEEccCccC
Q 047708 96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS-LSFLINLRTLSLHDCRR 174 (397)
Q Consensus 96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~ 174 (397)
+.++..++.+..+|... .++|+.|++++|.+..++...|..+++|++|++++|.+..++.. +..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 34555556666555433 35677777777776666666667777777777777777666543 46677777777777777
Q ss_pred cCCCc-cccCCCCCCEEEccCCCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCC
Q 047708 175 FGDLP-LIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGE 252 (397)
Q Consensus 175 ~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 252 (397)
...++ .+..+++|++|++++|.++.+|.. +..+++|++|++++ +.++.++...+..+++|++|++++|.+.+
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 65555 456777777777777777766543 56777777777777 45556666556777777777777776543
Q ss_pred CccCccccccccCCCCCCCEEEEeccC-CCCCCCccc
Q 047708 253 EDSSSNAKFIELGSLSRLTSLHIHIPN-GKIMSSDMS 288 (397)
Q Consensus 253 ~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~ 288 (397)
.+++|+.|+++.|. .+.+|.+++
T Consensus 163 -------------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 163 -------------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp -------------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred -------------CCCCHHHHHHHHHhCCceeeccCc
Confidence 34566666666665 445665555
No 84
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.7e-17 Score=162.07 Aligned_cols=176 Identities=26% Similarity=0.297 Sum_probs=133.9
Q ss_pred CCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcE
Q 047708 87 PSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRT 166 (397)
Q Consensus 87 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 166 (397)
.....+++|+.|++.++.+..++....+++|+.|++++|.+..+++ +..+++|+.|+|++|.+..+| .+..+++|++
T Consensus 37 ~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp ECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred cchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 3344677788888888888877765578888888888888777766 678888888888888887665 5778888888
Q ss_pred EEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708 167 LSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH 246 (397)
Q Consensus 167 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 246 (397)
|++++|.+.. ++.+..+++|+.|++++|.+..+ ..+..+++|+.|++++ +.+..+++ +..+++|+.|++++|.+.
T Consensus 114 L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 114 LSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEecCCCCCC-CccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcC-CcCCCchh--hccCCCCCEEECcCCCCC
Confidence 8888887754 46677888888888888888877 5677888888888888 45555555 778888888888888776
Q ss_pred ccccCCCccCccccccccCCCCCCCEEEEeccCCCCC
Q 047708 247 WQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM 283 (397)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 283 (397)
+ +..+..+++|+.|++++|.+...
T Consensus 189 ~-------------l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 D-------------LRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp B-------------CGGGTTCTTCSEEECCSEEEECC
T ss_pred C-------------ChHHccCCCCCEEEccCCcCcCC
Confidence 4 24577788888888888764443
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=7.3e-17 Score=140.86 Aligned_cols=167 Identities=25% Similarity=0.352 Sum_probs=144.6
Q ss_pred cCCccCCCCCccccccCceEEccCCCcccCCCc-C-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-
Q 047708 79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDE-L-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP- 155 (397)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~- 155 (397)
.+..+..+|.. -.++++.|++++|.+..++.. + ++++|+.|++++|.+..++...|..+++|++|++++|.+..++
T Consensus 22 ~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 100 (251)
T 3m19_A 22 QGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100 (251)
T ss_dssp TTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh
Confidence 44556666654 347899999999999986653 3 8999999999999988888888899999999999999997776
Q ss_pred hhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCC
Q 047708 156 SSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLR 233 (397)
Q Consensus 156 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 233 (397)
..+..+++|++|++++|.+...++ .+..+++|++|++++|.++.+|. .++.+++|++|++++ +.++.++...+..++
T Consensus 101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCT
T ss_pred hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCC
Confidence 457889999999999999987776 57899999999999999998876 688999999999999 677778776689999
Q ss_pred CCCEEEeecccccc
Q 047708 234 KLEELYMSRSFHHW 247 (397)
Q Consensus 234 ~L~~L~l~~~~~~~ 247 (397)
+|+.|++++|.+..
T Consensus 180 ~L~~L~l~~N~~~c 193 (251)
T 3m19_A 180 KLQTITLFGNQFDC 193 (251)
T ss_dssp TCCEEECCSCCBCT
T ss_pred CCCEEEeeCCceeC
Confidence 99999999999875
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=3.6e-19 Score=165.70 Aligned_cols=39 Identities=21% Similarity=0.039 Sum_probs=19.2
Q ss_pred cCCCcccEEEcCCCCCCC-----CChhhcCcccCcEEEccCccC
Q 047708 136 QGMKDLKVLDMGGIRGFS-----LPSSLSFLINLRTLSLHDCRR 174 (397)
Q Consensus 136 ~~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~ 174 (397)
..+++|++|++++|.+.. +|..+..+++|++|++++|.+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 344555555555555432 344444455555555555544
No 87
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=3.5e-19 Score=169.83 Aligned_cols=281 Identities=17% Similarity=0.108 Sum_probs=180.5
Q ss_pred cccccCceEEccCCCccc--CCCcC-CCC----CccEEEccCCCCccc----ChhhhcCCCcccEEEcCCCCCCCC-Chh
Q 047708 90 NKFEDLTGISLMFNDIHE--VPDEL-ECP----KLQALLLQENSLLVI----PDRFFQGMKDLKVLDMGGIRGFSL-PSS 157 (397)
Q Consensus 90 ~~~~~l~~l~l~~~~~~~--~~~~~-~~~----~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~l-~~~ 157 (397)
..++++++|++++|.+.+ +.... .++ +|++|++++|.+.+. ....+..+++|++|++++|.+... +..
T Consensus 53 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 132 (461)
T 1z7x_W 53 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 132 (461)
T ss_dssp HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH
T ss_pred HhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH
Confidence 345778888888887654 11111 233 688888888875532 234457788888888888876321 222
Q ss_pred hc-----CcccCcEEEccCccCcCCC----c-cccCCCCCCEEEccCCCCCcc-chhhh-----CCCCCCeeecCCCCCC
Q 047708 158 LS-----FLINLRTLSLHDCRRFGDL----P-LIGELSLLEILDLSKSDVSEI-PISFG-----RLSHLRLLDLTDCDDL 221 (397)
Q Consensus 158 ~~-----~l~~L~~L~l~~~~~~~~~----~-~~~~l~~L~~L~l~~~~~~~l-p~~i~-----~l~~L~~L~l~~~~~~ 221 (397)
+. ..++|++|++++|.+.... + .+..+++|++|++++|.+... +..+. ..++|++|++++| .+
T Consensus 133 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l 211 (461)
T 1z7x_W 133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GV 211 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CC
T ss_pred HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CC
Confidence 22 2456888888888765432 2 456678888888888877632 22222 3568888888885 34
Q ss_pred CC-----CchhhhcCCCCCCEEEeecccccccccCCCccCccccccc-cCCCCCCCEEEEeccCCCC-----CCCccc-C
Q 047708 222 EL-----IPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIE-LGSLSRLTSLHIHIPNGKI-----MSSDMS-F 289 (397)
Q Consensus 222 ~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~-----~~~~~~-~ 289 (397)
+. ++.. +..+++|++|++++|.+.... ...+... ...+++|++|++++|.+.. ++..+. +
T Consensus 212 ~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~-------~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 283 (461)
T 1z7x_W 212 TSDNCRDLCGI-VASKASLRELALGSNKLGDVG-------MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283 (461)
T ss_dssp BTTHHHHHHHH-HHHCTTCCEEECCSSBCHHHH-------HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHH-HHhCCCccEEeccCCcCChHH-------HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC
Confidence 43 3433 667888999998888765410 0011122 2357899999999998766 566677 8
Q ss_pred CCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-cccccc-----chHHHHHHHhhccceecccCCChhhhh
Q 047708 290 QNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISG-----VHSWIKNLLLRSEILALVDVNDLENIV 363 (397)
Q Consensus 290 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~-----lp~~~~~~~~~L~~L~l~~c~~l~~l~ 363 (397)
++|++|+++.|..... ....+......+.++|+.|++ ++.++. +|.++... ++|++|+|+++ .+.+..
T Consensus 284 ~~L~~L~Ls~n~i~~~----~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n-~i~~~~ 357 (461)
T 1z7x_W 284 ESLKELSLAGNELGDE----GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN-RFLLELQISNN-RLEDAG 357 (461)
T ss_dssp TTCCEEECTTCCCHHH----HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC-SSCCEEECCSS-BCHHHH
T ss_pred CCcceEECCCCCCchH----HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhC-CCccEEEccCC-cccccc
Confidence 9999999998764322 233444433344579999999 666653 45566655 69999999986 566542
Q ss_pred hc-cc---cCCCCCccEEEEeccCCce
Q 047708 364 SD-LA---NDGFNELMFLGIFGCNEMK 386 (397)
Q Consensus 364 ~~-~~---~~~~~~L~~L~i~~c~~L~ 386 (397)
.. +. ....++|++|++++|. +.
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n~-i~ 383 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADCD-VS 383 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSC-CC
T ss_pred HHHHHHHHcCCCCceEEEECCCCC-CC
Confidence 22 11 1236799999999994 44
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=6.2e-18 Score=152.48 Aligned_cols=197 Identities=13% Similarity=0.063 Sum_probs=123.7
Q ss_pred cCceEEccCCCccc-----CCCcCCCCCccEEEccCCCCcccChhhh--cCCCcccEEEcCCCCCCC-CC----hhhcCc
Q 047708 94 DLTGISLMFNDIHE-----VPDELECPKLQALLLQENSLLVIPDRFF--QGMKDLKVLDMGGIRGFS-LP----SSLSFL 161 (397)
Q Consensus 94 ~l~~l~l~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~-l~----~~~~~l 161 (397)
.++.+.+..+.+.. +.....+++|+.|++++|.+....+..+ ..+++|++|++++|.+.. .+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 35666666655442 1122244567788887777543333323 677778888888777743 22 233457
Q ss_pred ccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCc---cch--hhhCCCCCCeeecCCCCCCCCCchh---hhcCC
Q 047708 162 INLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSE---IPI--SFGRLSHLRLLDLTDCDDLELIPRG---VLSRL 232 (397)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~---lp~--~i~~l~~L~~L~l~~~~~~~~~~~~---~~~~l 232 (397)
++|++|++++|.+...++ .++.+++|++|++++|.+.. ++. .++.+++|++|++++ +.++.++.. .++.+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN-TGMETPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS-SCCCCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC-CCCCchHHHHHHHHhcC
Confidence 778888888877766665 67777788888888777652 332 235777788888877 445544432 34667
Q ss_pred CCCCEEEeecccccccccCCCccCccccccccCCC---CCCCEEEEeccCCCCCCCcccCCCccEEEEEecCcc
Q 047708 233 RKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSL---SRLTSLHIHIPNGKIMSSDMSFQNLTSFSITIGDLA 303 (397)
Q Consensus 233 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 303 (397)
++|++|++++|.+.+.. +..+..+ ++|++|++++|.+..+|..+ +++|+.|+++.|...
T Consensus 224 ~~L~~L~Ls~N~l~~~~-----------p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATV-----------NPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLN 285 (310)
T ss_dssp CCCSSEECTTSCCCCCC-----------CSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCC
T ss_pred CCCCEEECCCCCCCccc-----------hhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCC
Confidence 77888888877776532 2233333 67778888777777776655 367777777766543
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=1.3e-18 Score=158.73 Aligned_cols=224 Identities=15% Similarity=0.038 Sum_probs=118.0
Q ss_pred CCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCC--CChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEE
Q 047708 115 PKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFS--LPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILD 191 (397)
Q Consensus 115 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 191 (397)
+.++.|++++|.+...+..+ ..+++|++|++++|.+.. ++..+..+++|++|++++|.+....+ .++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 45566666665544433332 345666666666665532 44555556666666666665443322 455566666666
Q ss_pred ccCC-CCC--ccchhhhCCCCCCeeecCCCCCCCC--CchhhhcCCC-CCCEEEeeccc--ccccccCCCccCccccccc
Q 047708 192 LSKS-DVS--EIPISFGRLSHLRLLDLTDCDDLEL--IPRGVLSRLR-KLEELYMSRSF--HHWQFEGEEDSSSNAKFIE 263 (397)
Q Consensus 192 l~~~-~~~--~lp~~i~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~-~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~ 263 (397)
+++| .++ .++..+..+++|++|++++|..++. ++. .+..++ +|++|++++|. ++. ..+...
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~~~~~~----------~~l~~~ 217 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQK----------SDLSTL 217 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCH----------HHHHHH
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCcccCCH----------HHHHHH
Confidence 6666 455 3555566666666666666534443 232 255566 66666666663 221 123334
Q ss_pred cCCCCCCCEEEEeccC-C-CCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceecccccccchH-
Q 047708 264 LGSLSRLTSLHIHIPN-G-KIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHS- 339 (397)
Q Consensus 264 l~~l~~L~~L~l~~~~-~-~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~lp~- 339 (397)
+..+++|++|++++|. . ...+..+. +++|++|+++.|..... ..+..+.. +++|+.|++.+. ++.
T Consensus 218 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~l~~-----~~~L~~L~l~~~---i~~~ 286 (336)
T 2ast_B 218 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP---ETLLELGE-----IPTLKTLQVFGI---VPDG 286 (336)
T ss_dssp HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG---GGGGGGGG-----CTTCCEEECTTS---SCTT
T ss_pred HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH---HHHHHHhc-----CCCCCEEeccCc---cCHH
Confidence 4556666666666665 2 23344445 66666666666642211 11223333 666666666333 222
Q ss_pred HHHHHHhhccceecccCCChhhh
Q 047708 340 WIKNLLLRSEILALVDVNDLENI 362 (397)
Q Consensus 340 ~~~~~~~~L~~L~l~~c~~l~~l 362 (397)
.+..+...++.|+++ |+.++..
T Consensus 287 ~~~~l~~~l~~L~l~-~n~l~~~ 308 (336)
T 2ast_B 287 TLQLLKEALPHLQIN-CSHFTTI 308 (336)
T ss_dssp CHHHHHHHSTTSEES-CCCSCCT
T ss_pred HHHHHHhhCcceEEe-cccCccc
Confidence 233333457777776 4555554
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=6.5e-19 Score=160.79 Aligned_cols=218 Identities=15% Similarity=0.096 Sum_probs=164.6
Q ss_pred CccEEEccCCCCcccChhhhcCC--CcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCC-Cc-cccCCCCCCEEE
Q 047708 116 KLQALLLQENSLLVIPDRFFQGM--KDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGD-LP-LIGELSLLEILD 191 (397)
Q Consensus 116 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-~~-~~~~l~~L~~L~ 191 (397)
.++.++++++.+. +..+..+ +++++|+++++.+...+..+..+++|++|++++|.+... .+ .+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 3567777776544 3345666 889999999999877766688899999999999987543 44 788999999999
Q ss_pred ccCCCCC-ccchhhhCCCCCCeeecCCCCCCCC--CchhhhcCCCCCCEEEeecc-cccccccCCCccCccccccccCCC
Q 047708 192 LSKSDVS-EIPISFGRLSHLRLLDLTDCDDLEL--IPRGVLSRLRKLEELYMSRS-FHHWQFEGEEDSSSNAKFIELGSL 267 (397)
Q Consensus 192 l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~l~~l 267 (397)
+++|.++ ..|..++.+++|++|++++|..++. ++.. ++.+++|++|++++| .+.+. .+...+..+
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~----------~~~~~~~~l 193 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK----------HVQVAVAHV 193 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH----------HHHHHHHHS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH----------HHHHHHHhc
Confidence 9999888 6778899999999999999756664 4443 788999999999999 76541 234567788
Q ss_pred C-CCCEEEEeccC--C--CCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceecccccccchH--
Q 047708 268 S-RLTSLHIHIPN--G--KIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHS-- 339 (397)
Q Consensus 268 ~-~L~~L~l~~~~--~--~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~lp~-- 339 (397)
+ +|++|++++|. . ..++..+. +++|+.|+++.|...... .+..+.. +++|+.|++.++-...|.
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~---~~~~l~~-----l~~L~~L~l~~~~~~~~~~~ 265 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND---CFQEFFQ-----LNYLQHLSLSRCYDIIPETL 265 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG---GGGGGGG-----CTTCCEEECTTCTTCCGGGG
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH---HHHHHhC-----CCCCCEeeCCCCCCCCHHHH
Confidence 8 99999999984 2 44566666 999999999988743321 1235555 788999999322232333
Q ss_pred -HHHHHHhhccceecccC
Q 047708 340 -WIKNLLLRSEILALVDV 356 (397)
Q Consensus 340 -~~~~~~~~L~~L~l~~c 356 (397)
.+..+ ++|++|++++|
T Consensus 266 ~~l~~~-~~L~~L~l~~~ 282 (336)
T 2ast_B 266 LELGEI-PTLKTLQVFGI 282 (336)
T ss_dssp GGGGGC-TTCCEEECTTS
T ss_pred HHHhcC-CCCCEEeccCc
Confidence 34444 69999999988
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=8.9e-18 Score=154.08 Aligned_cols=193 Identities=17% Similarity=0.128 Sum_probs=107.4
Q ss_pred ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCC-CCCCh-hhcCcccCcE-EEccCc
Q 047708 96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG-FSLPS-SLSFLINLRT-LSLHDC 172 (397)
Q Consensus 96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~-~~~~l~~L~~-L~l~~~ 172 (397)
++++.++++++.+|..+ .+.++.|++++|.+..++...|.++++|++|++++|.+ +.+|. .+.+++++++ +.+..|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 34555555666666544 34566666666666666666566666666666666665 33433 3455665554 334445
Q ss_pred cCcCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCC-CCCEEEeecccccccc
Q 047708 173 RRFGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLR-KLEELYMSRSFHHWQF 249 (397)
Q Consensus 173 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~ 249 (397)
.+...++ .+..+++|++|++++|.++.+|. .+....++..|++.+++.+..++...+..+. .++.|++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-- 168 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-- 168 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--
Confidence 5544444 55666666666666666665543 3334455566666555566665554444443 46666666666542
Q ss_pred cCCCccCccccccccCCCCCCCEEEEec-cCCCCCCCc-cc-CCCccEEEEEecC
Q 047708 250 EGEEDSSSNAKFIELGSLSRLTSLHIHI-PNGKIMSSD-MS-FQNLTSFSITIGD 301 (397)
Q Consensus 250 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~-~~-~~~L~~L~l~~~~ 301 (397)
+........+|++|.+.+ |.++.+|.. +. +++|+.|+++.|.
T Consensus 169 ----------i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 169 ----------IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp ----------ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred ----------CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence 222333345566666653 345555543 33 5666666665543
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=150.28 Aligned_cols=196 Identities=15% Similarity=0.094 Sum_probs=153.4
Q ss_pred cccCceEEccCCCccc-CCCc---CCCCCccEEEccCCCCccc----ChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcc
Q 047708 92 FEDLTGISLMFNDIHE-VPDE---LECPKLQALLLQENSLLVI----PDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLI 162 (397)
Q Consensus 92 ~~~l~~l~l~~~~~~~-~~~~---~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~ 162 (397)
.++++.|++++|.+.+ .|.. ..+++|++|++++|.+... +...+..+++|++|++++|.+..+ +..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4569999999999886 4444 4689999999999996542 223345799999999999999665 46788999
Q ss_pred cCcEEEccCccCcCC---Cc--cccCCCCCCEEEccCCCCCccchh----hhCCCCCCeeecCCCCCCCCCchhhhcCC-
Q 047708 163 NLRTLSLHDCRRFGD---LP--LIGELSLLEILDLSKSDVSEIPIS----FGRLSHLRLLDLTDCDDLELIPRGVLSRL- 232 (397)
Q Consensus 163 ~L~~L~l~~~~~~~~---~~--~~~~l~~L~~L~l~~~~~~~lp~~----i~~l~~L~~L~l~~~~~~~~~~~~~~~~l- 232 (397)
+|++|++++|.+.+. ++ .+..+++|++|++++|.++.+|.. +..+++|++|++++|......|.. ++.+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhcc
Confidence 999999999987542 22 457899999999999999877653 578899999999995443434655 5555
Q ss_pred --CCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcc
Q 047708 233 --RKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLA 303 (397)
Q Consensus 233 --~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~ 303 (397)
++|++|++++|.+.. + +..+. ++|++|++++|.+..+|. +. +++|+.|+++.|+..
T Consensus 249 ~~~~L~~L~Ls~N~l~~-l-----------p~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQ-V-----------PKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCTTCCCEECCSSCCCS-C-----------CSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred CcCcCCEEECCCCCCCc-h-----------hhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 799999999999873 3 33332 799999999999888876 45 999999999877643
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=3.2e-18 Score=159.28 Aligned_cols=265 Identities=16% Similarity=0.087 Sum_probs=186.0
Q ss_pred cCCCcC-CCCCccEEEccCCCCcccChh----hhcCCCcccEEEcCCCCCC----CCChhh-------cCcccCcEEEcc
Q 047708 107 EVPDEL-ECPKLQALLLQENSLLVIPDR----FFQGMKDLKVLDMGGIRGF----SLPSSL-------SFLINLRTLSLH 170 (397)
Q Consensus 107 ~~~~~~-~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~----~l~~~~-------~~l~~L~~L~l~ 170 (397)
.++..+ .++.|+.|++++|.+...... .+..+++|++|++++|.+. .+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 344444 678899999999986553322 2568999999999998664 334444 688999999999
Q ss_pred CccCcCC----Cc-cccCCCCCCEEEccCCCCC-----ccchhhhCC---------CCCCeeecCCCCCC-CCCch--hh
Q 047708 171 DCRRFGD----LP-LIGELSLLEILDLSKSDVS-----EIPISFGRL---------SHLRLLDLTDCDDL-ELIPR--GV 228 (397)
Q Consensus 171 ~~~~~~~----~~-~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l---------~~L~~L~l~~~~~~-~~~~~--~~ 228 (397)
+|.+... ++ .+..+++|++|++++|.+. .++..+..+ ++|++|++++|... ..++. ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 9998762 33 7789999999999999986 233444445 89999999995433 23442 23
Q ss_pred hcCCCCCCEEEeecccccccccCCCccCcccccc-ccCCCCCCCEEEEeccCC-----CCCCCccc-CCCccEEEEEecC
Q 047708 229 LSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFI-ELGSLSRLTSLHIHIPNG-----KIMSSDMS-FQNLTSFSITIGD 301 (397)
Q Consensus 229 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~-----~~~~~~~~-~~~L~~L~l~~~~ 301 (397)
+..+++|++|++++|.+... ....... .+..+++|++|++++|.+ ..+|..+. +++|++|+++.|.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~-------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPE-------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHH-------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHhCCCcCEEECcCCCCCHh-------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 67899999999999988631 0001233 778899999999999997 56777777 9999999999887
Q ss_pred cccchhhhHHHHhhhhcc-cccccccceec-cccccc-----chHHHHHHHhhccceecccCCChhhhh--hccccCCCC
Q 047708 302 LAAGFISAAIEVFSRKFK-KRCSRAMGLSQ-DMRISG-----VHSWIKNLLLRSEILALVDVNDLENIV--SDLANDGFN 372 (397)
Q Consensus 302 ~~~~~~~~~~~~l~~~~~-~~~~~L~~L~l-~~~~~~-----lp~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~~ 372 (397)
..... ...++..+. ..+++|+.|++ ++.++. +|..+....++|++|++++|. +.... .......++
T Consensus 256 i~~~~----~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~ 330 (386)
T 2ca6_A 256 LSARG----AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREVFS 330 (386)
T ss_dssp CCHHH----HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHH
T ss_pred Cchhh----HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcchhHHHHHHHHhh
Confidence 54321 112222111 23788999999 777776 888885543799999999854 33322 111234567
Q ss_pred CccEEEEeccC
Q 047708 373 ELMFLGIFGCN 383 (397)
Q Consensus 373 ~L~~L~i~~c~ 383 (397)
+++.+++....
T Consensus 331 ~~~~~~l~~~d 341 (386)
T 2ca6_A 331 TRGRGELDELD 341 (386)
T ss_dssp HHTCCEECCCC
T ss_pred hcCcchhhhcc
Confidence 77766665443
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=9e-18 Score=164.01 Aligned_cols=191 Identities=19% Similarity=0.243 Sum_probs=161.8
Q ss_pred ccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEcc
Q 047708 91 KFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLH 170 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 170 (397)
.+..+..+.+..+.+..+.....++.|+.|++++|.+..++. +..+++|+.|+|++|.+..++. +..+++|++|+++
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence 445556666776676665555578899999999999888874 6899999999999999988876 8999999999999
Q ss_pred CccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccccc
Q 047708 171 DCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFE 250 (397)
Q Consensus 171 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 250 (397)
+|.+.. ++.+..+++|++|++++|.+..++ .+..+++|+.|++++ +.++.++. ++.+++|+.|++++|.+.+.
T Consensus 96 ~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~N~l~~~-- 168 (605)
T 1m9s_A 96 ENKIKD-LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQISDI-- 168 (605)
T ss_dssp SSCCCC-CTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCS-SCCCCCGG--GGSCTTCSEEECCSSCCCCC--
T ss_pred CCCCCC-ChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCC-CccCCchh--hcccCCCCEEECcCCcCCCc--
Confidence 998854 568999999999999999999875 688999999999999 56666643 89999999999999998762
Q ss_pred CCCccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCcc
Q 047708 251 GEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLA 303 (397)
Q Consensus 251 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~ 303 (397)
.. +..+++|+.|++++|.+..++ .+. +++|+.|+++.|...
T Consensus 169 ----------~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 169 ----------VP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp ----------GG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred ----------hh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence 22 788999999999999988886 466 999999999987654
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=1.8e-16 Score=153.23 Aligned_cols=179 Identities=18% Similarity=0.266 Sum_probs=150.2
Q ss_pred cCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCcc
Q 047708 94 DLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCR 173 (397)
Q Consensus 94 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 173 (397)
+++.|+++++.+.++|..+ +++|+.|++++|.+..+| ..+++|++|++++|.+..+|. +.. +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 7899999999999988765 488999999999988888 457999999999999988888 665 99999999999
Q ss_pred CcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCC
Q 047708 174 RFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEE 253 (397)
Q Consensus 174 ~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 253 (397)
+...++ .+++|+.|++++|.++.+|. .+++|++|++++ +.++.+|. +. ++|+.|++++|.+.. +|
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~N~L~~-lp--- 196 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVSTNLLES-LP--- 196 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCSSCCSS-CC---
T ss_pred CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcCCCCCc-hh---
Confidence 877544 78999999999999999987 678999999999 56677887 55 899999999998873 32
Q ss_pred ccCccccccccCC-----CCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecCccc
Q 047708 254 DSSSNAKFIELGS-----LSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAA 304 (397)
Q Consensus 254 ~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~ 304 (397)
. +.. .+.|+.|++++|.+..+|..+. +++|+.|+++.|....
T Consensus 197 --------~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 197 --------A-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp --------C-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred --------h-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 2 222 2333999999999999999888 9999999999887653
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.3e-17 Score=146.44 Aligned_cols=169 Identities=19% Similarity=0.158 Sum_probs=96.8
Q ss_pred ccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEcc
Q 047708 91 KFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLH 170 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 170 (397)
.+.++..+++..+.+.+++....+++|+.|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 344455555555555555433355666666666666555552 4566666666666666655554 5666666666666
Q ss_pred CccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccccc
Q 047708 171 DCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFE 250 (397)
Q Consensus 171 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 250 (397)
+|.+...++ +.. ++|++|++++|.++.++ .+..+++|++|++++ +.++.++. ++.+++|++|++++|.+.+
T Consensus 94 ~N~l~~l~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~N~i~~--- 164 (263)
T 1xeu_A 94 RNRLKNLNG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEITN--- 164 (263)
T ss_dssp SSCCSCCTT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTTSCCCB---
T ss_pred CCccCCcCc-ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCCCcCcc---
Confidence 666544332 222 66666666666666554 356666666666666 44555542 5666666666666666553
Q ss_pred CCCccCccccccccCCCCCCCEEEEeccCCC
Q 047708 251 GEEDSSSNAKFIELGSLSRLTSLHIHIPNGK 281 (397)
Q Consensus 251 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 281 (397)
...+..+++|+.|++++|...
T Consensus 165 ----------~~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 165 ----------TGGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ----------CTTSTTCCCCCEEEEEEEEEE
T ss_pred ----------hHHhccCCCCCEEeCCCCccc
Confidence 144555666666666666543
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=2.5e-16 Score=135.33 Aligned_cols=151 Identities=25% Similarity=0.316 Sum_probs=127.4
Q ss_pred CceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEEEccCcc
Q 047708 95 LTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSLHDCR 173 (397)
Q Consensus 95 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~ 173 (397)
-+.++.+++.+..+|.... ++|+.|++++|.+..+++..|..+++|++|++++|.+..+|. .+..+++|++|++++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 4668888888888886553 789999999999888877778899999999999999987765 45789999999999998
Q ss_pred CcCCCc-cccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccc
Q 047708 174 RFGDLP-LIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHW 247 (397)
Q Consensus 174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 247 (397)
+...++ .+..+++|++|++++|.++.+|..+..+++|++|++++ +.++.++...+..+++|+.|++.+|.+..
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 877766 57889999999999999999998899999999999998 67777877668889999999998888764
No 98
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=1.2e-17 Score=164.18 Aligned_cols=271 Identities=13% Similarity=0.133 Sum_probs=168.5
Q ss_pred ccccCceEEccCCCccc-----CCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCC----------------
Q 047708 91 KFEDLTGISLMFNDIHE-----VPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGG---------------- 148 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~---------------- 148 (397)
.+++|+.|+++++.+.. ++... ++++|+.|++++|.+..++. .+..+++|+.|+++.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH-HHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 56889999998888763 33333 67889999998888666553 356677777777653
Q ss_pred -----------CCCCCCChhhcCcccCcEEEccCccCcCCCc--cccCCCCCCEEEccCCCCC--ccchhhhCCCCCCee
Q 047708 149 -----------IRGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVS--EIPISFGRLSHLRLL 213 (397)
Q Consensus 149 -----------~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L 213 (397)
+....+|..+..+++|++|++++|.+..... .+..+++|++|++.+ .+. .++.....+++|++|
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEE
Confidence 2223344455556677777777766422211 246677777777763 222 344444567777888
Q ss_pred ecCC----------CCCCCCCch-hhhcCCCCCCEEEeecccccccccCCCccCccccccccCC-CCCCCEEEEe----c
Q 047708 214 DLTD----------CDDLELIPR-GVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGS-LSRLTSLHIH----I 277 (397)
Q Consensus 214 ~l~~----------~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~----~ 277 (397)
++++ |+.++.... .....+++|++|++..+.+++ ..+..+.. +++|++|+++ .
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~-----------~~~~~l~~~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN-----------ESLESIGTYLKNLCDFRLVLLDRE 416 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH-----------HHHHHHHHHCCSCCEEEEEECSCC
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH-----------HHHHHHHhhCCCCcEEEEeecCCC
Confidence 7774 555553221 223457888888886666654 33444444 7889999997 3
Q ss_pred cCCCCCCC------ccc-CCCccEEEEEecCcc-cchhhhHHHHhhhhcccccccccceec-cccccc--chHHHHHHHh
Q 047708 278 PNGKIMSS------DMS-FQNLTSFSITIGDLA-AGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISG--VHSWIKNLLL 346 (397)
Q Consensus 278 ~~~~~~~~------~~~-~~~L~~L~l~~~~~~-~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~--lp~~~~~~~~ 346 (397)
+.++..|. .+. +++|++|+++.|... .. ..+..+.. .+++|+.|++ ++.++. ++..+..+ +
T Consensus 417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~---~~~~~~~~----~~~~L~~L~L~~n~l~~~~~~~~~~~~-~ 488 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD---LGLSYIGQ----YSPNVRWMLLGYVGESDEGLMEFSRGC-P 488 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH---HHHHHHHH----SCTTCCEEEECSCCSSHHHHHHHHTCC-T
T ss_pred ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH---HHHHHHHH----hCccceEeeccCCCCCHHHHHHHHhcC-c
Confidence 34554332 244 889999999876531 11 12333332 3678999999 555542 44444444 6
Q ss_pred hccceecccCCChhhhhhccccCCCCCccEEEEeccC
Q 047708 347 RSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCN 383 (397)
Q Consensus 347 ~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~ 383 (397)
+|++|+|++|. +...........+++|++|++++|+
T Consensus 489 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 489 NLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp TCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred ccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 89999999987 5443212223478999999999986
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=7.8e-17 Score=135.24 Aligned_cols=128 Identities=21% Similarity=0.251 Sum_probs=62.2
Q ss_pred cCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcC-CCccccCCCCCCEEEccCCCCC-ccchhhhCCCCCCee
Q 047708 136 QGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFG-DLPLIGELSLLEILDLSKSDVS-EIPISFGRLSHLRLL 213 (397)
Q Consensus 136 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L 213 (397)
..+++|++|++++|.+..++ .+..+++|++|++++|.+.. .++.++.+++|++|++++|.++ ..|..++.+++|++|
T Consensus 63 ~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 63 EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence 44444444444444333332 34445555555555554433 2234455555555555555554 244455555555555
Q ss_pred ecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccC
Q 047708 214 DLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPN 279 (397)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 279 (397)
++++|..++.++. ++.+++|++|++++|.+.. +..+..+++|++|++++|.
T Consensus 142 ~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~-------------~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 142 DLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD-------------YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC-------------CTTGGGCSSCCEEEECBC-
T ss_pred EccCCCCccccHh--hcCCCCCCEEECCCCCCcC-------------hHHhccCCCCCEEEeeCcc
Confidence 5555433444442 5555555555555555442 1134455555555555554
No 100
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=2.9e-17 Score=161.46 Aligned_cols=287 Identities=15% Similarity=0.105 Sum_probs=157.2
Q ss_pred ccccCceEEccCCCcccCCC-----cC-CCCCccEEEccCCCCcccC----hhhhcCCCcccEEEcCCCCCCCCChhhcC
Q 047708 91 KFEDLTGISLMFNDIHEVPD-----EL-ECPKLQALLLQENSLLVIP----DRFFQGMKDLKVLDMGGIRGFSLPSSLSF 160 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~-----~~-~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~l~~~~~~ 160 (397)
.+++|++|++.+|.+.+... .. .+++|+.|++++|.+..+. ..++.++++|++|+++++.+..+|..+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 56778888888876654321 11 5778888888887754222 23356788888888888877777777888
Q ss_pred cccCcEEEccCccCc----CCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCC-CchhhhcCCCCC
Q 047708 161 LINLRTLSLHDCRRF----GDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLEL-IPRGVLSRLRKL 235 (397)
Q Consensus 161 l~~L~~L~l~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L 235 (397)
+++|++|+++..... .....+..+++|+.+++..+....+|..+..+++|++|++++|. ++. .....++.+++|
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCC
Confidence 888888888754322 11225667778888888776666777777788888888888866 332 222335677777
Q ss_pred CEEEeecccccccccCC------------C-------------ccCccccccccCCCCCCCEEEEeccCCCC-CCCccc-
Q 047708 236 EELYMSRSFHHWQFEGE------------E-------------DSSSNAKFIELGSLSRLTSLHIHIPNGKI-MSSDMS- 288 (397)
Q Consensus 236 ~~L~l~~~~~~~~~~~~------------~-------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~- 288 (397)
++|++..+.....++.. . .............+++|++|++.++.+.. .+..+.
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 77777633211100000 0 00000011112224444555444433211 111122
Q ss_pred -CCCccEEEEEecC---cccch-hhhHHHHhhhhcccccccccceec---ccccc-cchHHHHHHHhhccceecccCCCh
Q 047708 289 -FQNLTSFSITIGD---LAAGF-ISAAIEVFSRKFKKRCSRAMGLSQ---DMRIS-GVHSWIKNLLLRSEILALVDVNDL 359 (397)
Q Consensus 289 -~~~L~~L~l~~~~---~~~~~-~~~~~~~l~~~~~~~~~~L~~L~l---~~~~~-~lp~~~~~~~~~L~~L~l~~c~~l 359 (397)
+++|++|+++.+. ...+. .+.++..+. ..+++|+.|++ .+.++ ..+..+....++|++|+|++|. +
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~----~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l 475 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLL----IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-E 475 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH----HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-S
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHH----HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-C
Confidence 4555555555322 11110 000111111 12666777777 22122 2233343323578888887643 5
Q ss_pred hhhhhccccCCCCCccEEEEeccC
Q 047708 360 ENIVSDLANDGFNELMFLGIFGCN 383 (397)
Q Consensus 360 ~~l~~~~~~~~~~~L~~L~i~~c~ 383 (397)
..........++++|++|+|++|+
T Consensus 476 ~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 476 SDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CHHHHHHHHhcCcccCeeeccCCC
Confidence 442212233578999999999987
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1.1e-16 Score=134.21 Aligned_cols=152 Identities=19% Similarity=0.210 Sum_probs=131.1
Q ss_pred cccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCC-CChhhcCcccCcEEE
Q 047708 90 NKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFS-LPSSLSFLINLRTLS 168 (397)
Q Consensus 90 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~ 168 (397)
..+++++.|+++++.+..++....+++|+.|++++|.+..++. +..+++|++|++++|.+.. .+..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4788999999999999998865589999999999998776653 7899999999999999954 677899999999999
Q ss_pred ccCccCcCCCc-cccCCCCCCEEEccCCC-CCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708 169 LHDCRRFGDLP-LIGELSLLEILDLSKSD-VSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH 246 (397)
Q Consensus 169 l~~~~~~~~~~-~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 246 (397)
+++|.+....+ .++.+++|++|++++|. ++.+| .+..+++|++|++++ +.++.++. +..+++|++|++++|.+.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCTT--GGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChHH--hccCCCCCEEEeeCcccC
Confidence 99999976444 78999999999999997 88887 789999999999999 56677773 899999999999999875
Q ss_pred c
Q 047708 247 W 247 (397)
Q Consensus 247 ~ 247 (397)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=4.8e-16 Score=132.70 Aligned_cols=149 Identities=24% Similarity=0.344 Sum_probs=111.5
Q ss_pred ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCccC
Q 047708 96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCRR 174 (397)
Q Consensus 96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~ 174 (397)
+.++..++.++.+|..+. +.++.|++++|.+..++...|..+++|++|++++|.+..+ |..+.++++|++|++++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 567777777777776543 6788888888887777776678888888888888888555 66778888888888888887
Q ss_pred cCCCc-cccCCCCCCEEEccCCCCCcc-chhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708 175 FGDLP-LIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH 246 (397)
Q Consensus 175 ~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 246 (397)
...++ .+..+++|++|++++|.++.+ |..+..+++|++|++++ +.++.++...+..+++|++|++++|.+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 76665 467788888888888877755 45677778888888877 5566666655777777788877777654
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=3.6e-16 Score=132.40 Aligned_cols=162 Identities=22% Similarity=0.238 Sum_probs=137.2
Q ss_pred CCccCCCCCccccccCceEEccCCCcccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh
Q 047708 80 GVELKDWPSINKFEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS 157 (397)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~ 157 (397)
+..+..+|.. ..++++.|+++++.+..++... .+++|+.|++++|.+..++...|..+++|++|++++|.+..++..
T Consensus 16 ~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 16 SQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp SSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 3344444433 4578999999999999877643 899999999999999999988889999999999999999877664
Q ss_pred -hcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCCC
Q 047708 158 -LSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRK 234 (397)
Q Consensus 158 -~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 234 (397)
+..+++|++|++++|.+...++ .+..+++|++|++++|.++.+|.. +..+++|++|++++|.. .+.+++
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~ 166 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPG 166 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTT
T ss_pred HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCC
Confidence 6889999999999999987776 578999999999999999988764 78899999999999532 346778
Q ss_pred CCEEEeeccccccccc
Q 047708 235 LEELYMSRSFHHWQFE 250 (397)
Q Consensus 235 L~~L~l~~~~~~~~~~ 250 (397)
|+.|+++.|.+.+.+|
T Consensus 167 l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 167 IRYLSEWINKHSGVVR 182 (208)
T ss_dssp THHHHHHHHHCTTTBB
T ss_pred HHHHHHHHHhCCceee
Confidence 9999999999998654
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=2.2e-17 Score=152.24 Aligned_cols=235 Identities=13% Similarity=0.126 Sum_probs=158.8
Q ss_pred cccCceEEccCCCcccCCC-----cC-CCC-CccEEEccCCCCcccChhhhcCC-----CcccEEEcCCCCCCCCC-hh-
Q 047708 92 FEDLTGISLMFNDIHEVPD-----EL-ECP-KLQALLLQENSLLVIPDRFFQGM-----KDLKVLDMGGIRGFSLP-SS- 157 (397)
Q Consensus 92 ~~~l~~l~l~~~~~~~~~~-----~~-~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~l~-~~- 157 (397)
.++++.|++++|.+...+. .+ .++ +|+.|++++|.+.......+..+ ++|++|++++|.+...+ ..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3459999999999888653 23 677 89999999999777655444443 89999999999985443 33
Q ss_pred ---hcCc-ccCcEEEccCccCcCCCc-c----ccC-CCCCCEEEccCCCCC-----ccchhhhCCC-CCCeeecCCCCCC
Q 047708 158 ---LSFL-INLRTLSLHDCRRFGDLP-L----IGE-LSLLEILDLSKSDVS-----EIPISFGRLS-HLRLLDLTDCDDL 221 (397)
Q Consensus 158 ---~~~l-~~L~~L~l~~~~~~~~~~-~----~~~-l~~L~~L~l~~~~~~-----~lp~~i~~l~-~L~~L~l~~~~~~ 221 (397)
+..+ ++|++|++++|.+....+ . +.. .++|++|++++|.++ .++..+..++ +|++|++++| .+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-NL 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-CC
Confidence 4444 799999999999866654 2 334 368999999999887 4555666666 8999999994 45
Q ss_pred CCCchh----hhcCC-CCCCEEEeecccccccccCCCccCccccccccCC-CCCCCEEEEeccCCCCCCC-----ccc-C
Q 047708 222 ELIPRG----VLSRL-RKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGS-LSRLTSLHIHIPNGKIMSS-----DMS-F 289 (397)
Q Consensus 222 ~~~~~~----~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~-----~~~-~ 289 (397)
+..... .+..+ ++|++|++++|.+.... ...+...+.. .++|++|++++|.++..+. .+. +
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKS-------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChhH-------HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence 444432 24455 59999999999876411 1123444544 3589999999998766543 234 7
Q ss_pred CCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-cccccc
Q 047708 290 QNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISG 336 (397)
Q Consensus 290 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~ 336 (397)
++|+.|+++.|..... .+..+..+...+ ..+.+|+.|++ ++.+..
T Consensus 253 ~~L~~L~L~~n~l~~i-~~~~~~~l~~~~-~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 253 KHLQTVYLDYDIVKNM-SKEQCKALGAAF-PNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp TTCSEEEEEHHHHTTC-CHHHHHHHHTTS-TTCCEEEEECTTSCBCCG
T ss_pred CCccEEEeccCCcccc-CHHHHHHHHHHh-ccCCceEEEecCCCcCCC
Confidence 8999999998862110 111122332211 13777888888 555553
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=6.8e-16 Score=131.73 Aligned_cols=150 Identities=18% Similarity=0.262 Sum_probs=110.8
Q ss_pred ceEEccCCCcccCCCcCCCCCccEEEccCCCCccc-ChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEEEccCcc
Q 047708 96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVI-PDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSLHDCR 173 (397)
Q Consensus 96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~ 173 (397)
+.++++++.++.+|..+ ...++.|++++|.+..+ +...|..+++|++|++++|.+..++. .+..+++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 57788888888777654 34567888888887666 34556788888888888888866644 67788888888888888
Q ss_pred CcCCCc-cccCCCCCCEEEccCCCCCcc-chhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccc
Q 047708 174 RFGDLP-LIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHW 247 (397)
Q Consensus 174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 247 (397)
+...++ .+..+++|++|++++|.++.+ |..+..+++|++|++++ +.++.+++..+..+++|++|++++|.+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 876666 577788888888888887755 56677788888888887 55555644447778888888887777654
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=8.2e-16 Score=134.97 Aligned_cols=156 Identities=21% Similarity=0.211 Sum_probs=136.0
Q ss_pred cCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcc
Q 047708 83 LKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLI 162 (397)
Q Consensus 83 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~ 162 (397)
+..++....+++++.|++.+|.+..++....+++|+.|++++|.+..++. +..+++|++|++++|.+..+|.... .
T Consensus 31 i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~ 106 (263)
T 1xeu_A 31 VTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--A 106 (263)
T ss_dssp TTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--S
T ss_pred cccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--C
Confidence 44445556789999999999999999865689999999999999888887 7999999999999999988876433 9
Q ss_pred cCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeec
Q 047708 163 NLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242 (397)
Q Consensus 163 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 242 (397)
+|++|++++|.+.. ++.+..+++|++|++++|.++.++ .+..+++|++|++++ +.++.++ .+..+++|+.|++++
T Consensus 107 ~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~-N~i~~~~--~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 107 CLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NEITNTG--GLTRLKKVNWIDLTG 181 (263)
T ss_dssp SCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT-SCCCBCT--TSTTCCCCCEEEEEE
T ss_pred cccEEEccCCccCC-ChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCC-CcCcchH--HhccCCCCCEEeCCC
Confidence 99999999999865 467999999999999999999887 789999999999999 5666663 289999999999999
Q ss_pred ccccc
Q 047708 243 SFHHW 247 (397)
Q Consensus 243 ~~~~~ 247 (397)
|.+..
T Consensus 182 N~~~~ 186 (263)
T 1xeu_A 182 QKCVN 186 (263)
T ss_dssp EEEEC
T ss_pred CcccC
Confidence 99875
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=6.5e-17 Score=149.02 Aligned_cols=246 Identities=15% Similarity=0.102 Sum_probs=169.9
Q ss_pred EEccCCCccc-CCCcCC-CCCccEEEccCCCCcccCh----hhhcCCC-cccEEEcCCCCCCCC-ChhhcCc-----ccC
Q 047708 98 ISLMFNDIHE-VPDELE-CPKLQALLLQENSLLVIPD----RFFQGMK-DLKVLDMGGIRGFSL-PSSLSFL-----INL 164 (397)
Q Consensus 98 l~l~~~~~~~-~~~~~~-~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~l-~~~~~~l-----~~L 164 (397)
+.++.+.+.+ +|.... .++|+.|++++|.+...+. ..+..++ +|++|++++|.+... +..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677777776 454444 4559999999999888776 6678888 999999999998554 5556664 899
Q ss_pred cEEEccCccCcCCCc-c----ccCC-CCCCEEEccCCCCCccch-h----hhC-CCCCCeeecCCCCCCCC-----Cchh
Q 047708 165 RTLSLHDCRRFGDLP-L----IGEL-SLLEILDLSKSDVSEIPI-S----FGR-LSHLRLLDLTDCDDLEL-----IPRG 227 (397)
Q Consensus 165 ~~L~l~~~~~~~~~~-~----~~~l-~~L~~L~l~~~~~~~lp~-~----i~~-l~~L~~L~l~~~~~~~~-----~~~~ 227 (397)
++|++++|.+....+ . +..+ ++|++|++++|.++..+. . +.. .++|++|++++| .++. ++..
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~ 161 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQI 161 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHH
Confidence 999999999876655 2 4455 899999999999885543 2 334 369999999994 4442 2332
Q ss_pred hhcCCC-CCCEEEeecccccccccCCCccCccccccccCCC-CCCCEEEEeccCCCC-----CCCccc--CCCccEEEEE
Q 047708 228 VLSRLR-KLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSL-SRLTSLHIHIPNGKI-----MSSDMS--FQNLTSFSIT 298 (397)
Q Consensus 228 ~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~-----~~~~~~--~~~L~~L~l~ 298 (397)
+..++ +|++|++++|.+.... ...+...+..+ ++|++|++++|.++. ++..+. .++|+.|+++
T Consensus 162 -l~~~~~~L~~L~Ls~n~l~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 162 -LAAIPANVNSLNLRGNNLASKN-------CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp -HHTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred -HhcCCccccEeeecCCCCchhh-------HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 45565 9999999999887521 11223345555 599999999999666 454454 3599999999
Q ss_pred ecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHH-HHHHH------hhccceecccCC
Q 047708 299 IGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSW-IKNLL------LRSEILALVDVN 357 (397)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~-~~~~~------~~L~~L~l~~c~ 357 (397)
.|........ .+.. .+..+++|+.|++ ++.+..++.. +..+. ++|++|+++++.
T Consensus 234 ~N~l~~~~~~----~l~~-~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 234 LNCLHGPSLE----NLKL-LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp SSCCCCCCHH----HHHH-TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCCCCcHHHH----HHHH-HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 8876543221 2211 1123788999999 5554433322 22221 568888898744
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=1.4e-16 Score=146.06 Aligned_cols=236 Identities=13% Similarity=0.087 Sum_probs=181.4
Q ss_pred cEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEEEccCccCcCCCc--cccCCCCCCE-EEcc
Q 047708 118 QALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEI-LDLS 193 (397)
Q Consensus 118 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~-L~l~ 193 (397)
++++.+++.+..+|..+ .+++++|++++|.+..+|. .+.++++|++|++++|.+.+.++ .+..++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57788888888998754 4689999999999998876 58999999999999999866554 6788988876 5556
Q ss_pred CCCCCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCC-CCCC
Q 047708 194 KSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSL-SRLT 271 (397)
Q Consensus 194 ~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~ 271 (397)
+|+++.++ ..+..+++|++|++++ +.++.++...+....++..+++.++.....++ ...+..+ ..++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~----------~~~f~~~~~~l~ 157 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE----------RNSFVGLSFESV 157 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC----------TTSSTTSBSSCE
T ss_pred CCcccccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhcccccccccc----------ccchhhcchhhh
Confidence 67888775 5778999999999999 66777776545566778888887755443221 1233344 4688
Q ss_pred EEEEeccCCCCCCCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceec-ccccccchHHHHHHHhhcc
Q 047708 272 SLHIHIPNGKIMSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQ-DMRISGVHSWIKNLLLRSE 349 (397)
Q Consensus 272 ~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l-~~~~~~lp~~~~~~~~~L~ 349 (397)
.|++++|.+..++.... ..+|+.+.+..+..... ++...|..+++|+.|++ ++.++.+|.+. +.+|+
T Consensus 158 ~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~--------i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~ 226 (350)
T 4ay9_X 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE--------LPNDVFHGASGPVILDISRTRIHSLPSYG---LENLK 226 (350)
T ss_dssp EEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCC--------CCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCC
T ss_pred hhccccccccCCChhhccccchhHHhhccCCcccC--------CCHHHhccCcccchhhcCCCCcCccChhh---hccch
Confidence 99999999998888766 77889998876554433 22333445889999999 88899998654 26899
Q ss_pred ceecccCCChhhhhhccccCCCCCccEEEEec
Q 047708 350 ILALVDVNDLENIVSDLANDGFNELMFLGIFG 381 (397)
Q Consensus 350 ~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~ 381 (397)
.|.+.++.+++.+| ....|++|+.+++..
T Consensus 227 ~L~~l~~~~l~~lP---~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 227 KLRARSTYNLKKLP---TLEKLVALMEASLTY 255 (350)
T ss_dssp EEECTTCTTCCCCC---CTTTCCSCCEEECSC
T ss_pred HhhhccCCCcCcCC---CchhCcChhhCcCCC
Confidence 99998999999988 456899999999854
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=6.9e-16 Score=142.06 Aligned_cols=149 Identities=21% Similarity=0.222 Sum_probs=87.7
Q ss_pred ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhc-CCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccCcc
Q 047708 96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQ-GMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHDCR 173 (397)
Q Consensus 96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~ 173 (397)
+.+++.++.+..+|..+ .+.++.|++++|.+..++...|. ++++|++|++++|.+..++ ..+..+++|++|++++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 45666666666665543 23466666666666666655555 6666666666666665543 346666666666666666
Q ss_pred CcCCCc-cccCCCCCCEEEccCCCCCcc-chhhhCCCCCCeeecCCCCCCCCCchhhh---cCCCCCCEEEeeccccc
Q 047708 174 RFGDLP-LIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDDLELIPRGVL---SRLRKLEELYMSRSFHH 246 (397)
Q Consensus 174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~ 246 (397)
+...++ .+..+++|++|++++|.+..+ |..+..+++|++|++++ +.++.+|...+ ..+++|+.|++++|.+.
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 655444 456666666666666666644 34556666666666666 45555555433 34556666666665554
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=2.6e-15 Score=138.16 Aligned_cols=167 Identities=24% Similarity=0.302 Sum_probs=141.4
Q ss_pred ecCCccCCCCCccccccCceEEccCCCcccCCCcC---CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC
Q 047708 78 KAGVELKDWPSINKFEDLTGISLMFNDIHEVPDEL---ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL 154 (397)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 154 (397)
..+..+..+|.. -.+.++.|++++|.+..++... ++++|+.|++++|.+..++...|.++++|++|++++|.+..+
T Consensus 25 c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 103 (361)
T 2xot_A 25 CSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103 (361)
T ss_dssp CCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred eCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC
Confidence 344556666653 3467899999999999876543 789999999999999999888789999999999999999777
Q ss_pred Ch-hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccchhh----hCCCCCCeeecCCCCCCCCCchhh
Q 047708 155 PS-SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPISF----GRLSHLRLLDLTDCDDLELIPRGV 228 (397)
Q Consensus 155 ~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~i----~~l~~L~~L~l~~~~~~~~~~~~~ 228 (397)
+. .+..+.+|++|++++|.+....+ .+..+++|++|++++|.++.+|..+ ..+++|++|++++ +.++.+|...
T Consensus 104 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~ 182 (361)
T 2xot_A 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTD 182 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHH
T ss_pred CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHH
Confidence 55 68899999999999999987765 8999999999999999999998765 6799999999999 7788888777
Q ss_pred hcCCCC--CCEEEeeccccc
Q 047708 229 LSRLRK--LEELYMSRSFHH 246 (397)
Q Consensus 229 ~~~l~~--L~~L~l~~~~~~ 246 (397)
+..++. ++.|++.+|.+.
T Consensus 183 ~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHSCHHHHTTEECCSSCEE
T ss_pred hhhccHhhcceEEecCCCcc
Confidence 888887 488999998764
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=4e-15 Score=126.96 Aligned_cols=145 Identities=18% Similarity=0.263 Sum_probs=71.0
Q ss_pred EEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCcc-chhhhCCCCCCeeecCCCCC
Q 047708 143 VLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTDCDD 220 (397)
Q Consensus 143 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~ 220 (397)
.++++++.+..+|..+. .+|+.|++++|.+...++ .+..+++|++|++++|.++.+ |..+..+++|++|++++ +.
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NK 91 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-Cc
Confidence 34444444444443332 344555555554444333 444555555555555555433 34455555555555555 34
Q ss_pred CCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc-cc-CCCccEEEEE
Q 047708 221 LELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-MS-FQNLTSFSIT 298 (397)
Q Consensus 221 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~ 298 (397)
++.+|...+..+++|++|++++|.+.+ .....+..+++|+.|++++|.+..++.. +. +++|+.|+++
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINC-----------LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCE-----------eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 444554444555555555555555543 1123444555555555555554444433 33 5556666555
Q ss_pred ecC
Q 047708 299 IGD 301 (397)
Q Consensus 299 ~~~ 301 (397)
.|+
T Consensus 161 ~N~ 163 (220)
T 2v9t_B 161 QNP 163 (220)
T ss_dssp SSC
T ss_pred CCC
Confidence 554
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=8.3e-15 Score=125.83 Aligned_cols=147 Identities=23% Similarity=0.282 Sum_probs=89.3
Q ss_pred ccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccC
Q 047708 117 LQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSK 194 (397)
Q Consensus 117 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~ 194 (397)
-+.++++++.+..+|..+ .++|++|++++|.+..+ |..+..+++|++|++++|.+...++ .+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345666666666666532 36677777777776544 4556666777777777776655544 456666777777776
Q ss_pred CCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEE
Q 047708 195 SDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSL 273 (397)
Q Consensus 195 ~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 273 (397)
|.++.+|.. +..+++|++|++++ +.++.+|.. +..+++|++|++++|.+.+. ....+..+++|+.|
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRG-IERLTHLTHLALDQNQLKSI-----------PHGAFDRLSSLTHA 164 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTT-GGGCTTCSEEECCSSCCCCC-----------CTTTTTTCTTCCEE
T ss_pred CcCCccChhHhCcchhhCeEeccC-CcccccCcc-cccCCCCCEEECCCCcCCcc-----------CHHHHhCCCCCCEE
Confidence 666655543 45666666666666 455566655 56666666666666665531 12334555666666
Q ss_pred EEeccC
Q 047708 274 HIHIPN 279 (397)
Q Consensus 274 ~l~~~~ 279 (397)
++++|.
T Consensus 165 ~l~~N~ 170 (229)
T 3e6j_A 165 YLFGNP 170 (229)
T ss_dssp ECTTSC
T ss_pred EeeCCC
Confidence 666655
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=7.6e-15 Score=125.23 Aligned_cols=146 Identities=14% Similarity=0.174 Sum_probs=72.6
Q ss_pred EEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCc--cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCC
Q 047708 143 VLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCD 219 (397)
Q Consensus 143 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 219 (397)
.++++++.+..+|..+. ..+++|++++|.+...++ .+..+++|++|++++|.++.++. .+..+++|++|++++ +
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N 91 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS-N 91 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-S
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC-C
Confidence 44444444444444332 223455555555444322 24455555555555555554433 455555555555555 3
Q ss_pred CCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCC-CCccc-CCCccEEEE
Q 047708 220 DLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SSDMS-FQNLTSFSI 297 (397)
Q Consensus 220 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l 297 (397)
.++.++...++.+++|++|++++|.+.+ ..+..+..+++|++|++++|.+..+ |..+. +++|+.|++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITC-----------VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCC-----------BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCe-----------ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 4444444445555555555555555544 1223444555555555555554444 33444 566666666
Q ss_pred EecCc
Q 047708 298 TIGDL 302 (397)
Q Consensus 298 ~~~~~ 302 (397)
+.|+.
T Consensus 161 ~~N~l 165 (220)
T 2v70_A 161 LANPF 165 (220)
T ss_dssp CSCCE
T ss_pred cCcCC
Confidence 55543
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=1.3e-14 Score=140.26 Aligned_cols=177 Identities=17% Similarity=0.151 Sum_probs=142.9
Q ss_pred cCCccCCCCCccccccCceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhh
Q 047708 79 AGVELKDWPSINKFEDLTGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSL 158 (397)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~ 158 (397)
.++.+..+|.. -+++++.|++++|.+..+| ..+++|+.|++++|.+..+|. +.+ +|++|++++|.+..+|.
T Consensus 67 s~n~L~~lp~~-l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~-- 137 (571)
T 3cvr_A 67 NRLNLSSLPDN-LPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTMLPE-- 137 (571)
T ss_dssp CSSCCSCCCSC-CCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCCCC--
T ss_pred CCCCCCccCHh-HcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCCCC--
Confidence 34556666653 2588999999999999988 457999999999999888887 344 99999999999988887
Q ss_pred cCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCC---
Q 047708 159 SFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKL--- 235 (397)
Q Consensus 159 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--- 235 (397)
.+++|++|++++|.+...++ .+++|++|++++|.++.+|. +. ++|++|++++ +.++.+|. +.. +|
T Consensus 138 -~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~--~~~--~L~~~ 205 (571)
T 3cvr_A 138 -LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST-NLLESLPA--VPV--RNHHS 205 (571)
T ss_dssp -CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS-SCCSSCCC--CC--------
T ss_pred -cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC-CCCCchhh--HHH--hhhcc
Confidence 78999999999999877544 67899999999999999998 65 8999999999 57778887 433 66
Q ss_pred ----CEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCC-CCCCCccc
Q 047708 236 ----EELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNG-KIMSSDMS 288 (397)
Q Consensus 236 ----~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~ 288 (397)
+.|++++|.+.. ++..+..+++|+.|++++|.+ +..|..+.
T Consensus 206 ~~~L~~L~Ls~N~l~~------------lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 206 EETEIFFRCRENRITH------------IPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp --CCEEEECCSSCCCC------------CCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred cccceEEecCCCccee------------cCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 999999999873 456677799999999999985 33444433
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=8.7e-18 Score=163.11 Aligned_cols=79 Identities=27% Similarity=0.381 Sum_probs=37.3
Q ss_pred CcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecc
Q 047708 164 LRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRS 243 (397)
Q Consensus 164 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 243 (397)
|++|++++|.+...+ .++.+++|+.|++++|.++.+|..++.+++|++|++++ +.++.+| . ++.+++|++|++++|
T Consensus 443 L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~-l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-G-VANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-G-GTTCSSCCEEECCSS
T ss_pred ceEEEecCCCCCCCc-CccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-c-cCCCCCCcEEECCCC
Confidence 444455554443322 24444555555555554444444455555555555544 3333344 2 444555555555544
Q ss_pred ccc
Q 047708 244 FHH 246 (397)
Q Consensus 244 ~~~ 246 (397)
.+.
T Consensus 519 ~l~ 521 (567)
T 1dce_A 519 RLQ 521 (567)
T ss_dssp CCC
T ss_pred CCC
Confidence 444
No 116
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=6.7e-16 Score=151.80 Aligned_cols=38 Identities=11% Similarity=-0.009 Sum_probs=21.1
Q ss_pred hhccceecccCCChhhhhhccccCCCCCccEEEEeccCC
Q 047708 346 LRSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNE 384 (397)
Q Consensus 346 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~ 384 (397)
++|++|+|++|.- ...........+++|++|++++|+.
T Consensus 481 ~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 481 DSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp TTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 5666666666553 3222121234567777777777753
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=9e-15 Score=119.28 Aligned_cols=140 Identities=18% Similarity=0.146 Sum_probs=102.2
Q ss_pred CCCcccEEEcCCCCCC--CCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCc-cchhhhCCCCCCee
Q 047708 137 GMKDLKVLDMGGIRGF--SLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSE-IPISFGRLSHLRLL 213 (397)
Q Consensus 137 ~l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L 213 (397)
..++|++|++++|.+. .+|..+..+++|++|++++|.+... +.+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3467888888888776 7777777888888888888877655 777788888888888888876 67777778888888
Q ss_pred ecCCCCCCCCCch-hhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc
Q 047708 214 DLTDCDDLELIPR-GVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD 286 (397)
Q Consensus 214 ~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 286 (397)
++++ +.++.++. ..++.+++|++|++++|.+.+..+ .....+..+++|++|++++|....+|..
T Consensus 101 ~Ls~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 101 NLSG-NKLKDISTLEPLKKLECLKSLDLFNCEVTNLND--------YRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp ECBS-SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT--------HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred eccC-CccCcchhHHHHhcCCCCCEEEeeCCcCcchHH--------HHHHHHHhCccCcEecCCCCChhhcccc
Confidence 8888 46666652 337788888888888887764110 0012567788888888888887666653
No 118
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=5.7e-16 Score=152.33 Aligned_cols=266 Identities=16% Similarity=0.088 Sum_probs=139.9
Q ss_pred CCCCccEEEccCCCCcccC-hhhhcCCCcccEEEcCCC-CCCC--CChhhcCcccCcEEEccCccCcCCCc-----cccC
Q 047708 113 ECPKLQALLLQENSLLVIP-DRFFQGMKDLKVLDMGGI-RGFS--LPSSLSFLINLRTLSLHDCRRFGDLP-----LIGE 183 (397)
Q Consensus 113 ~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~-~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~ 183 (397)
.+++|+.|++++|.+.+.. ..+...+++|++|++++| .+.. ++..+..+++|++|++++|.+....+ ....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 4556666666666633322 222224666666666666 2222 33333456666666666666433221 1224
Q ss_pred CCCCCEEEccCCC--CC--ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc-------c-----
Q 047708 184 LSLLEILDLSKSD--VS--EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH-------W----- 247 (397)
Q Consensus 184 l~~L~~L~l~~~~--~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-------~----- 247 (397)
+++|++|++++|. +. .++..+.++++|++|++++|..++.++.. +..+++|++|++..+... +
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 5566666666664 22 22233344566666666665444444433 556666666665433210 0
Q ss_pred -------cccCCCccCccccccccCCCCCCCEEEEeccCCCC--CCCccc-CCCccEEEEEecCcccchhhhHHHHhhhh
Q 047708 248 -------QFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKI--MSSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRK 317 (397)
Q Consensus 248 -------~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~ 317 (397)
.+..........+...+..+++|++|++++|.+.. +...+. +++|++|++..| ... ..+..+..
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~----~~l~~l~~- 335 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED----AGLEVLAS- 335 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH----HHHHHHHH-
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH----HHHHHHHH-
Confidence 00000001111233333467889999998887432 222244 788999999876 211 12233322
Q ss_pred cccccccccceec-c---------cccccc-hHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEe-----c
Q 047708 318 FKKRCSRAMGLSQ-D---------MRISGV-HSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIF-----G 381 (397)
Q Consensus 318 ~~~~~~~L~~L~l-~---------~~~~~l-p~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~-----~ 381 (397)
.+++|+.|++ . +.++.. ...+....++|++|.+. |+.+...........+|+|+.|++. +
T Consensus 336 ---~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~ 411 (594)
T 2p1m_B 336 ---TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKA 411 (594)
T ss_dssp ---HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTC
T ss_pred ---hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCC
Confidence 3678888877 2 122211 11122212688999654 6777665323233468999999999 6
Q ss_pred cCCceEee
Q 047708 382 CNEMKCLL 389 (397)
Q Consensus 382 c~~L~~i~ 389 (397)
|..++..|
T Consensus 412 ~~~l~~~~ 419 (594)
T 2p1m_B 412 PDYLTLEP 419 (594)
T ss_dssp CCTTTCCC
T ss_pred cccccCCc
Confidence 77777544
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=2e-14 Score=117.13 Aligned_cols=129 Identities=25% Similarity=0.289 Sum_probs=70.5
Q ss_pred CCccEEEccCCCCc--ccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEE
Q 047708 115 PKLQALLLQENSLL--VIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILD 191 (397)
Q Consensus 115 ~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 191 (397)
++|+.|++++|.+. .++.. +..+++|++|++++|.+..+ ..+..+++|++|++++|.+...++ .+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555533 44432 35555556666655555444 445555666666666665554333 334466666666
Q ss_pred ccCCCCCccc--hhhhCCCCCCeeecCCCCCCCCCch---hhhcCCCCCCEEEeeccccc
Q 047708 192 LSKSDVSEIP--ISFGRLSHLRLLDLTDCDDLELIPR---GVLSRLRKLEELYMSRSFHH 246 (397)
Q Consensus 192 l~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~ 246 (397)
+++|.++.+| ..+..+++|++|++++ +.++.+|. ..+..+++|++|++.+|...
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666665544 4555666666666666 34444443 23566666666666666543
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=4.1e-14 Score=112.90 Aligned_cols=123 Identities=22% Similarity=0.158 Sum_probs=67.7
Q ss_pred cccCceEEccCCCcc--cCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCC-CChhhcCcccCcEE
Q 047708 92 FEDLTGISLMFNDIH--EVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFS-LPSSLSFLINLRTL 167 (397)
Q Consensus 92 ~~~l~~l~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L 167 (397)
.++++.|++++|.+. .+|..+ .+++|+.|++++|.+..+ ..+..+++|++|++++|.+.. +|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 355667777776666 455543 556666666666665444 224556666666666666544 44444455556666
Q ss_pred EccCccCcCCC--ccccCCCCCCEEEccCCCCCccch----hhhCCCCCCeeecC
Q 047708 168 SLHDCRRFGDL--PLIGELSLLEILDLSKSDVSEIPI----SFGRLSHLRLLDLT 216 (397)
Q Consensus 168 ~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~lp~----~i~~l~~L~~L~l~ 216 (397)
++++|.+...+ ..+..+++|++|++++|.++.+|. .+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66555554432 345555555555555555554443 44555555555543
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=3.7e-14 Score=113.16 Aligned_cols=129 Identities=20% Similarity=0.147 Sum_probs=76.9
Q ss_pred CCcccEEEcCCCCCC--CCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCc-cchhhhCCCCCCeee
Q 047708 138 MKDLKVLDMGGIRGF--SLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSE-IPISFGRLSHLRLLD 214 (397)
Q Consensus 138 l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~ 214 (397)
.++|+.|++++|.+. .+|..+..+++|++|++++|.+... +.++.+++|++|++++|.++. +|..++.+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 455666666666665 5666666666677777766666444 566666677777777766664 666666667777777
Q ss_pred cCCCCCCCCCch-hhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEe
Q 047708 215 LTDCDDLELIPR-GVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIH 276 (397)
Q Consensus 215 l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 276 (397)
+++ +.++.++. ..++.+++|++|++++|.+.+..+ .....+..+++|+.|+++
T Consensus 95 ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND--------YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTT-SCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT--------HHHHHHHHCTTCCEETTB
T ss_pred CCC-CcCCChHHHHHHhhCCCCCEEeCcCCcccchHH--------HHHHHHHHCCCcccccCC
Confidence 766 34554431 226666777777777666654110 000245556666666554
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.50 E-value=1.9e-13 Score=113.98 Aligned_cols=124 Identities=25% Similarity=0.326 Sum_probs=68.6
Q ss_pred EEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCC
Q 047708 119 ALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDV 197 (397)
Q Consensus 119 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~ 197 (397)
.++++++.+..+|..+ .++|++|++++|.+..+|..+..+++|++|++++|.+....+ .+..+++|++|++++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 3444444444444322 234555566655555555555556666666666665555444 455666666666666666
Q ss_pred Cccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccc
Q 047708 198 SEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHH 246 (397)
Q Consensus 198 ~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 246 (397)
+.++. .+..+++|++|++++ +.++.+|...+..+++|+.|++.+|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence 54443 455566666666666 4455555544556666666666665543
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=1.8e-14 Score=118.43 Aligned_cols=129 Identities=16% Similarity=0.153 Sum_probs=57.4
Q ss_pred CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccc-cCCCCCCEEE
Q 047708 113 ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLI-GELSLLEILD 191 (397)
Q Consensus 113 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~ 191 (397)
++++|+.|++++|.+..++. +....++|++|++++|.+..+ ..++.+++|++|++++|.+...++.+ ..+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 34444444444444443322 112222455555555544433 33444445555555555444333322 4445555555
Q ss_pred ccCCCCCccch--hhhCCCCCCeeecCCCCCCCCCchh---hhcCCCCCCEEEeeccc
Q 047708 192 LSKSDVSEIPI--SFGRLSHLRLLDLTDCDDLELIPRG---VLSRLRKLEELYMSRSF 244 (397)
Q Consensus 192 l~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~ 244 (397)
+++|.+..+|. .+..+++|++|++++ +.+..+|.. .++.+++|+.|++++|.
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 55554444443 444455555555544 233333332 24444555555544443
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=5.6e-14 Score=140.57 Aligned_cols=156 Identities=22% Similarity=0.231 Sum_probs=95.9
Q ss_pred cccCceEEccCCCcccCCCcC-CCCCccEEEc-----cCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCc
Q 047708 92 FEDLTGISLMFNDIHEVPDEL-ECPKLQALLL-----QENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLR 165 (397)
Q Consensus 92 ~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l-----~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~ 165 (397)
-++++.+.+..+.+...+... ....|+.+.+ ..|.+. ++...|..++.|++|+|++|.+..+|..+..+++|+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 355777888777776654433 3333333332 333333 445557888889999999988888888888889999
Q ss_pred EEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccc
Q 047708 166 TLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFH 245 (397)
Q Consensus 166 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 245 (397)
+|++++|.+...++.++.+++|++|++++|.++.+|..++.+++|++|++++ +.++.+|.. ++.+++|++|++++|.+
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC-CCCCccChh-hhcCCCccEEeCCCCcc
Confidence 9999998887555578889999999999998888888888899999999988 567788877 88889999999999888
Q ss_pred ccccc
Q 047708 246 HWQFE 250 (397)
Q Consensus 246 ~~~~~ 250 (397)
.+.+|
T Consensus 329 ~~~~p 333 (727)
T 4b8c_D 329 EKQFL 333 (727)
T ss_dssp CSHHH
T ss_pred CCCCh
Confidence 87554
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=2e-13 Score=113.77 Aligned_cols=121 Identities=22% Similarity=0.303 Sum_probs=61.6
Q ss_pred ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChh-hhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCcc
Q 047708 96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDR-FFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCR 173 (397)
Q Consensus 96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~ 173 (397)
+.++++++.+..+|..+. ..++.|++++|.+..++.. .|..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 455566665555554331 2555555555555444432 345555555555555555333 4445555555555555555
Q ss_pred CcCCCc-cccCCCCCCEEEccCCCCCcc-chhhhCCCCCCeeecCC
Q 047708 174 RFGDLP-LIGELSLLEILDLSKSDVSEI-PISFGRLSHLRLLDLTD 217 (397)
Q Consensus 174 ~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 217 (397)
+...++ .+..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 544443 345555555555555555532 34444455555555554
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=1.3e-14 Score=145.05 Aligned_cols=139 Identities=21% Similarity=0.207 Sum_probs=112.2
Q ss_pred CCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCC
Q 047708 109 PDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLL 187 (397)
Q Consensus 109 ~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L 187 (397)
+..+ .++.|+.|++++|.+..++..++ .+++|++|+|++|.+..+|..++.+++|++|++++|.+...+..++.+++|
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence 3334 78999999999999889988865 899999999999999999999999999999999999998666689999999
Q ss_pred CEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCC-CCCEEEeecccccccc
Q 047708 188 EILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLR-KLEELYMSRSFHHWQF 249 (397)
Q Consensus 188 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~ 249 (397)
++|++++|.++.+|..++.+++|++|++++|...+.+|.. +..+. .+..+++.+|.+.+.+
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCCCCC
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcccCcC
Confidence 9999999999999999999999999999995444444433 44332 1223567777776643
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.47 E-value=2.9e-13 Score=112.75 Aligned_cols=124 Identities=21% Similarity=0.217 Sum_probs=52.8
Q ss_pred cEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh--hcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccC
Q 047708 118 QALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS--LSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSK 194 (397)
Q Consensus 118 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~ 194 (397)
+.++++++.+..+|..++ .+|++|++++|.+..++.. ++.+++|++|++++|.+....+ .+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 344455544444443221 1444555555544444332 4444444444444444444433 444444444444444
Q ss_pred CCCCccch-hhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccc
Q 047708 195 SDVSEIPI-SFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFH 245 (397)
Q Consensus 195 ~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 245 (397)
|.++.++. .+..+++|++|++++ +.++.+++..++.+++|++|++++|.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 44443332 234444444444444 222222222234444444444444443
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=8.3e-14 Score=114.41 Aligned_cols=129 Identities=16% Similarity=0.127 Sum_probs=112.1
Q ss_pred ccccccCceEEccCCCcccCCCcCCCC-CccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhh-cCcccCcE
Q 047708 89 INKFEDLTGISLMFNDIHEVPDELECP-KLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSL-SFLINLRT 166 (397)
Q Consensus 89 ~~~~~~l~~l~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~-~~l~~L~~ 166 (397)
...+.+++.|++++|.+..++....+. +|+.|++++|.+..++ .+..+++|++|++++|.+..+|..+ ..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 346778999999999999987766554 9999999999987773 3789999999999999998887655 88999999
Q ss_pred EEccCccCcCCCc--cccCCCCCCEEEccCCCCCccchh----hhCCCCCCeeecCCCC
Q 047708 167 LSLHDCRRFGDLP--LIGELSLLEILDLSKSDVSEIPIS----FGRLSHLRLLDLTDCD 219 (397)
Q Consensus 167 L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~lp~~----i~~l~~L~~L~l~~~~ 219 (397)
|++++|.+...++ .+..+++|++|++++|.+..+|.. ++.+++|++|++++|.
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999966555 788999999999999999988875 8999999999999843
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.43 E-value=2e-12 Score=106.23 Aligned_cols=121 Identities=25% Similarity=0.338 Sum_probs=67.7
Q ss_pred ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh-hcCcccCcEEEccCccC
Q 047708 96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS-LSFLINLRTLSLHDCRR 174 (397)
Q Consensus 96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~ 174 (397)
+.+++.++++..+|... .+.|+.|++++|.+..++...|..+++|++|++++|.+..++.. +..+++|++|++++|.+
T Consensus 10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 45666666666555332 24566666666665555555556666666666666666554432 35556666666666655
Q ss_pred cCCCc-cccCCCCCCEEEccCCCCCccchh-hhCCCCCCeeecCC
Q 047708 175 FGDLP-LIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTD 217 (397)
Q Consensus 175 ~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~ 217 (397)
...++ .+..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 54444 345555555555555555555443 24455555555555
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=2.7e-12 Score=106.92 Aligned_cols=123 Identities=25% Similarity=0.304 Sum_probs=106.7
Q ss_pred ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccCccC
Q 047708 96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHDCRR 174 (397)
Q Consensus 96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~ 174 (397)
+.++++++.+..+|..+ .+.|+.|++++|.+..+|. .|..+++|++|++++|.+..++ ..+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 57888888888888755 3689999999999888884 4799999999999999997775 4688999999999999999
Q ss_pred cCCCc-cccCCCCCCEEEccCCCCCccch-hhhCCCCCCeeecCCCCC
Q 047708 175 FGDLP-LIGELSLLEILDLSKSDVSEIPI-SFGRLSHLRLLDLTDCDD 220 (397)
Q Consensus 175 ~~~~~-~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~ 220 (397)
...++ .+..+++|++|++++|.++.+|. .+..+++|++|++++|..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 88777 78999999999999999998886 578899999999999543
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.42 E-value=2.2e-12 Score=105.90 Aligned_cols=127 Identities=22% Similarity=0.357 Sum_probs=96.0
Q ss_pred ccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCCh-hhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccC
Q 047708 117 LQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPS-SLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSK 194 (397)
Q Consensus 117 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~ 194 (397)
.+.++++++.+..+|..+ .++|++|+++++.+..++. .+..+++|++|++++|.+...++ .+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 456777777777777533 4678888888888866655 45778888888888888876665 467888888888888
Q ss_pred CCCCccchh-hhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccc
Q 047708 195 SDVSEIPIS-FGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHW 247 (397)
Q Consensus 195 ~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 247 (397)
|.++.+|.. +..+++|++|++++ +.++.+|...+..+++|++|++++|.+.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 888877654 57788888888888 56667777656778888888888887765
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=2.5e-12 Score=124.83 Aligned_cols=172 Identities=21% Similarity=0.186 Sum_probs=132.4
Q ss_pred ccccCceEEccCCCcccCCCcC-CCCCccEEEccCCC-------------CcccChhhhc--------------------
Q 047708 91 KFEDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENS-------------LLVIPDRFFQ-------------------- 136 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~-------------~~~~~~~~~~-------------------- 136 (397)
..++++.|++++|.+..+|..+ ++++|+.|++++|. ....++..++
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 4567788888888888777766 77778877765542 1111110000
Q ss_pred ------------CCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhh
Q 047708 137 ------------GMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISF 204 (397)
Q Consensus 137 ------------~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i 204 (397)
....|++|++++|.+..+|. ++.+++|++|++++|.+...++.++.+++|++|++++|.++.+| .+
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l 504 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GV 504 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GG
T ss_pred hhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-cc
Confidence 01258899999999988987 99999999999999999866669999999999999999999998 89
Q ss_pred hCCCCCCeeecCCCCCCCCC--chhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEE
Q 047708 205 GRLSHLRLLDLTDCDDLELI--PRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLH 274 (397)
Q Consensus 205 ~~l~~L~~L~l~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 274 (397)
+.+++|++|++++ +.++.+ |.. ++.+++|+.|++++|.+.+..+ .....+..+++|+.|+
T Consensus 505 ~~l~~L~~L~Ls~-N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~--------~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 505 ANLPRLQELLLCN-NRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG--------IQERLAEMLPSVSSIL 566 (567)
T ss_dssp TTCSSCCEEECCS-SCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS--------CTTHHHHHCTTCSEEE
T ss_pred CCCCCCcEEECCC-CCCCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc--------HHHHHHHHCcccCccC
Confidence 9999999999999 566766 555 9999999999999999886332 1122233467788775
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.34 E-value=3.2e-12 Score=115.97 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=33.9
Q ss_pred CCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccC
Q 047708 114 CPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHD 171 (397)
Q Consensus 114 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~ 171 (397)
|++|+.+.+.. .+..++...|.+|++|+.+++..+.+..++ ..+..+.++.++....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 67777777766 666666666777777777777776654442 2344444454444433
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=5.2e-14 Score=118.03 Aligned_cols=117 Identities=23% Similarity=0.179 Sum_probs=82.6
Q ss_pred CcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhC
Q 047708 127 LLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGR 206 (397)
Q Consensus 127 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~ 206 (397)
+..++. .+..+++|++|++++|.+..+| .+..+++|++|++++|.+...+..+..+++|++|++++|.++.+| .+..
T Consensus 37 l~~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 37 IEKMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp CCCCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HhhhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 444444 3577778888888877776676 677777888888888777654445566677788888777777776 5777
Q ss_pred CCCCCeeecCCCCCCCCCch-hhhcCCCCCCEEEeecccccc
Q 047708 207 LSHLRLLDLTDCDDLELIPR-GVLSRLRKLEELYMSRSFHHW 247 (397)
Q Consensus 207 l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~ 247 (397)
+++|++|++++ +.++.++. ..+..+++|++|++++|.+.+
T Consensus 114 l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 114 LVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 77788888777 45555543 336777778888887777665
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=4.4e-11 Score=97.71 Aligned_cols=97 Identities=23% Similarity=0.292 Sum_probs=43.0
Q ss_pred cEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCC
Q 047708 118 QALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKS 195 (397)
Q Consensus 118 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~ 195 (397)
+.++++++.+..+|..+ .++|++|++++|.+..+ |..+.++++|++|++++|.+...++ .+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34444444444444322 14444555555444333 3334444444444444444444333 2344444444444444
Q ss_pred CCCccchh-hhCCCCCCeeecCC
Q 047708 196 DVSEIPIS-FGRLSHLRLLDLTD 217 (397)
Q Consensus 196 ~~~~lp~~-i~~l~~L~~L~l~~ 217 (397)
.++.+|.. +..+++|++|++++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCS
T ss_pred ccceeCHHHhccccCCCEEEeCC
Confidence 44444432 44444444444444
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.25 E-value=4.6e-11 Score=97.26 Aligned_cols=102 Identities=26% Similarity=0.449 Sum_probs=52.3
Q ss_pred cEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccchh-hhCCCCCCeeecCCCC
Q 047708 142 KVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPIS-FGRLSHLRLLDLTDCD 219 (397)
Q Consensus 142 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 219 (397)
++++++++.+..+|..+ ..+|++|++++|.+...++ .+..+++|++|++++|.++.+|.. +..+++|++|++++ +
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-N 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-C
Confidence 44555555555555433 2455555555555544433 455555555555555555544442 34555555555555 3
Q ss_pred CCCCCchhhhcCCCCCCEEEeeccccc
Q 047708 220 DLELIPRGVLSRLRKLEELYMSRSFHH 246 (397)
Q Consensus 220 ~~~~~~~~~~~~l~~L~~L~l~~~~~~ 246 (397)
.++.++...++.+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 444454444555555555555555543
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=4.5e-11 Score=97.68 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=95.3
Q ss_pred ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh-hcCcccCcEEEccCccC
Q 047708 96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS-LSFLINLRTLSLHDCRR 174 (397)
Q Consensus 96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~ 174 (397)
+.++++++.+..+|..+. +.|+.|++++|.+..+++..|.++++|++|++++|.+..+|.. +..+++|++|++++|.+
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 688999999998887664 8999999999999988877789999999999999999888775 57899999999999999
Q ss_pred cCCCc-cccCCCCCCEEEccCCCCCccchhh
Q 047708 175 FGDLP-LIGELSLLEILDLSKSDVSEIPISF 204 (397)
Q Consensus 175 ~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~i 204 (397)
...++ .+..+++|++|++++|.+...+..+
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred ceeCHHHhccccCCCEEEeCCCCcccccccH
Confidence 88777 5899999999999999988666543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.23 E-value=1.6e-13 Score=115.09 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=106.1
Q ss_pred ccEEEcCCC--CCCCCChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCC
Q 047708 141 LKVLDMGGI--RGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDC 218 (397)
Q Consensus 141 L~~L~l~~~--~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 218 (397)
++...+.+. .+..+|..+..+++|++|++++|.+... +.+..+++|++|++++|.++.+|..+..+++|++|++++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~- 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY- 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-CCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE-
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-cccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC-
Confidence 344444443 3455666889999999999999988664 488889999999999998888888888888999999998
Q ss_pred CCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCC-CC----------cc
Q 047708 219 DDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIM-SS----------DM 287 (397)
Q Consensus 219 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~----------~~ 287 (397)
+.++.+|. ++.+++|++|++++|.+... ..+..+..+++|++|++++|.+... |. .+
T Consensus 103 N~l~~l~~--~~~l~~L~~L~l~~N~i~~~----------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 103 NQIASLSG--IEKLVNLRVLYMSNNKITNW----------GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp EECCCHHH--HHHHHHSSEEEESEEECCCH----------HHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCcCCc--cccCCCCCEEECCCCcCCch----------hHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 56666763 78888999999999887641 1124677888899999988874332 22 14
Q ss_pred c-CCCccEEE
Q 047708 288 S-FQNLTSFS 296 (397)
Q Consensus 288 ~-~~~L~~L~ 296 (397)
. +++|+.|+
T Consensus 171 ~~l~~L~~Ld 180 (198)
T 1ds9_A 171 KRLPNLKKLD 180 (198)
T ss_dssp HHCSSCSEEC
T ss_pred HhCCCcEEEC
Confidence 4 77777775
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.21 E-value=1.2e-10 Score=94.72 Aligned_cols=102 Identities=22% Similarity=0.225 Sum_probs=56.9
Q ss_pred ceEEccCCCcccCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChh-hcCcccCcEEEccCccC
Q 047708 96 TGISLMFNDIHEVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSS-LSFLINLRTLSLHDCRR 174 (397)
Q Consensus 96 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~ 174 (397)
+.++++++.+..+|..+ .+.|+.|++++|.+..+++..|.++++|++|++++|.+..+|.. +..+++|++|++++|.+
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 45666666666655443 25556666666665555544455566666666666655554443 34555555555555555
Q ss_pred cCCCc-cccCCCCCCEEEccCCCCC
Q 047708 175 FGDLP-LIGELSLLEILDLSKSDVS 198 (397)
Q Consensus 175 ~~~~~-~~~~l~~L~~L~l~~~~~~ 198 (397)
...++ .+..+++|++|++++|.+.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 54444 3555555555555555444
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=3.1e-11 Score=109.47 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=59.6
Q ss_pred cccCceEEccCCCccc--CCCcCCCCCccEEEccCCCCcccChhhhcC--------CCcccEEEcCCCCCCCCCh-hhcC
Q 047708 92 FEDLTGISLMFNDIHE--VPDELECPKLQALLLQENSLLVIPDRFFQG--------MKDLKVLDMGGIRGFSLPS-SLSF 160 (397)
Q Consensus 92 ~~~l~~l~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~l~~-~~~~ 160 (397)
+++|+.|++++|.+.. .... .++.++.+.+..+ .++...|.+ +.+|+.|++.. .+..++. .+.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~-~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAG-TYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSS-SSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCccc-ccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 4455666666665551 1111 1111233333332 566667788 99999999988 7766644 6788
Q ss_pred cccCcEEEccCccCcCCCc-cccCCCCCCEEEccC
Q 047708 161 LINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSK 194 (397)
Q Consensus 161 l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~ 194 (397)
+++|+.+++.++.+....+ .+..+.++..+....
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 8999999999887755554 566666666665544
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.08 E-value=1.7e-09 Score=100.42 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=22.5
Q ss_pred ccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEe
Q 047708 181 IGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYM 240 (397)
Q Consensus 181 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 240 (397)
+..+.+|+.+++..+.++.+|.......+|+.+.+.. .+..++...|..+++|+.+.+
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEEC
T ss_pred hhCcccCCeeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEec
Confidence 3344444444444444443333222233444444432 133333333444444444443
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.05 E-value=3.6e-09 Score=98.19 Aligned_cols=255 Identities=12% Similarity=0.147 Sum_probs=177.3
Q ss_pred ccCceEEccCCCcccCCCcC-CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEcc
Q 047708 93 EDLTGISLMFNDIHEVPDEL-ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLH 170 (397)
Q Consensus 93 ~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~ 170 (397)
..++.+.+. +.++.++... .-.+|+.+.+..+ +..++...|.++ +|+.+.+.. .+..+ +..+.++.+|+.+++.
T Consensus 113 ~~l~~i~ip-~~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 113 KGYNEIILP-NSVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SSCSEEECC-TTCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CCccEEEEC-CccCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 455666654 3445444433 2247999998766 777777778885 699999986 55555 3578889999999999
Q ss_pred CccCcCCCc-cccCCCCCCEEEccCCCCCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeeccccccc
Q 047708 171 DCRRFGDLP-LIGELSLLEILDLSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQ 248 (397)
Q Consensus 171 ~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 248 (397)
.+.+..... .+. ..+|+.+.+..+ ++.++ ..+..+.+|+.+.+.. .++.++...|.. .+|+.+.+..+ +..
T Consensus 189 ~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~-i~~- 261 (401)
T 4fdw_A 189 KTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNG-VTN- 261 (401)
T ss_dssp TSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETT-CCE-
T ss_pred CCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCC-ccE-
Confidence 988876666 444 689999999754 77665 4788899999999986 367788777777 78999999543 221
Q ss_pred ccCCCccCccccccccCCCCCCCEEEEeccCCC-----CCCCc-cc-CCCccEEEEEecCcccchhhhHHHHhhhhcccc
Q 047708 249 FEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGK-----IMSSD-MS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKR 321 (397)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~-~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~ 321 (397)
.....+..|++|+.+.+.++... .++.. +. |++|+.+.+... +..++...|..
T Consensus 262 ----------I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~----------i~~I~~~aF~~ 321 (401)
T 4fdw_A 262 ----------IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES----------IRILGQGLLGG 321 (401)
T ss_dssp ----------ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT----------CCEECTTTTTT
T ss_pred ----------EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc----------eEEEhhhhhcC
Confidence 12456788999999999887654 34433 55 899999987621 22344445566
Q ss_pred cccccceecccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCC-CccEEEEec
Q 047708 322 CSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFN-ELMFLGIFG 381 (397)
Q Consensus 322 ~~~L~~L~l~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~-~L~~L~i~~ 381 (397)
|.+|+.+.+...+..++...+... +|+.+.+.+ +.+..+... ...+++ .++.|++-.
T Consensus 322 c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~-~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 322 NRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEK-VWYGFPDDITVIRVPA 379 (401)
T ss_dssp CCSCCEEEECTTCCEECTTSSSSS-CCCEEEECC-SSCCBCCCS-SCCCSCTTCCEEEECG
T ss_pred CCCccEEEECccccEEcHHhCCCC-CCCEEEEcC-CCCcccccc-cccCCCCCccEEEeCH
Confidence 899999999666777776555443 888998887 444444322 123453 567777654
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.96 E-value=8.9e-11 Score=107.90 Aligned_cols=159 Identities=16% Similarity=0.084 Sum_probs=83.1
Q ss_pred CCccEEEccCCCCcccChhhhc-----CCCcccEEEcCCCCCCCC--ChhhcCcccCcEEEccCccCcCCCc-cc-----
Q 047708 115 PKLQALLLQENSLLVIPDRFFQ-----GMKDLKVLDMGGIRGFSL--PSSLSFLINLRTLSLHDCRRFGDLP-LI----- 181 (397)
Q Consensus 115 ~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~~~~~-~~----- 181 (397)
+.|+.|++++|.+.......+. ..++|++|++++|.+... ..-...+.+|++|++++|.+..... .+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 3455555555554332221111 235666666666665321 1112234566666776666533211 11
Q ss_pred cCCCCCCEEEccCCCCCc-----cchhhhCCCCCCeeecCCCCCCCCCc----hhhhcCCCCCCEEEeecccccccccCC
Q 047708 182 GELSLLEILDLSKSDVSE-----IPISFGRLSHLRLLDLTDCDDLELIP----RGVLSRLRKLEELYMSRSFHHWQFEGE 252 (397)
Q Consensus 182 ~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~ 252 (397)
...++|++|++++|.++. ++..+...++|++|++++| .++... ...+...++|++|++++|.+...-
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g--- 227 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA--- 227 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH---
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH---
Confidence 235667777777776652 4445566677777777773 343221 112455667777777777665310
Q ss_pred CccCccccccccCCCCCCCEEEEeccCCC
Q 047708 253 EDSSSNAKFIELGSLSRLTSLHIHIPNGK 281 (397)
Q Consensus 253 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 281 (397)
...+...+...++|++|++++|.++
T Consensus 228 ----~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 ----ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp ----HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred ----HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 1123334445667777777777643
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.89 E-value=6.1e-09 Score=94.97 Aligned_cols=99 Identities=19% Similarity=0.094 Sum_probs=74.5
Q ss_pred EEEccCC-CCcccChhhhcCCCcccEEEcCC-CCCCCCC-hhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEEEccC
Q 047708 119 ALLLQEN-SLLVIPDRFFQGMKDLKVLDMGG-IRGFSLP-SSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSK 194 (397)
Q Consensus 119 ~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~ 194 (397)
.++++++ .+..+|. +..+.+|++|+|++ |.+..++ ..++++.+|++|++++|.+.+.++ .+..+++|++|++++
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 6777777 57888888888885 7876665 467788888888888888877766 678888888888888
Q ss_pred CCCCccchhhhCCCCCCeeecCCCC
Q 047708 195 SDVSEIPISFGRLSHLRLLDLTDCD 219 (397)
Q Consensus 195 ~~~~~lp~~i~~l~~L~~L~l~~~~ 219 (397)
|.++.+|..+.....|+.|++.+|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CccceeCHHHcccCCceEEEeeCCC
Confidence 8888777655444448888888743
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.84 E-value=1.4e-08 Score=92.46 Aligned_cols=102 Identities=18% Similarity=0.137 Sum_probs=83.0
Q ss_pred ceEEccCC-CcccCCCcCCCCCccEEEccC-CCCcccChhhhcCCCcccEEEcCCCCCCCCC-hhhcCcccCcEEEccCc
Q 047708 96 TGISLMFN-DIHEVPDELECPKLQALLLQE-NSLLVIPDRFFQGMKDLKVLDMGGIRGFSLP-SSLSFLINLRTLSLHDC 172 (397)
Q Consensus 96 ~~l~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~ 172 (397)
..++.+++ .+..+|....+++|+.|++++ |.+..++...|.++++|++|+|++|.+..++ ..+.++++|++|++++|
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 34677777 788888822788899999986 8888888877899999999999999986664 46788999999999999
Q ss_pred cCcCCCcc-ccCCCCCCEEEccCCCCC
Q 047708 173 RRFGDLPL-IGELSLLEILDLSKSDVS 198 (397)
Q Consensus 173 ~~~~~~~~-~~~l~~L~~L~l~~~~~~ 198 (397)
.+...++. +..+. |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 98877764 44444 999999999877
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.80 E-value=8.3e-10 Score=101.43 Aligned_cols=155 Identities=13% Similarity=-0.013 Sum_probs=113.5
Q ss_pred cccCceEEccCCCccc-----CCCcC--CCCCccEEEccCCCCccc-ChhhhcCCCcccEEEcCCCCCCCC-----Chhh
Q 047708 92 FEDLTGISLMFNDIHE-----VPDEL--ECPKLQALLLQENSLLVI-PDRFFQGMKDLKVLDMGGIRGFSL-----PSSL 158 (397)
Q Consensus 92 ~~~l~~l~l~~~~~~~-----~~~~~--~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~l-----~~~~ 158 (397)
.++++.|++++|.+.. +.... ..+.|+.|++++|.+.+. ...++..+++|++|++++|.+... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678999999998875 22222 347999999999986543 233345567899999999988432 1222
Q ss_pred -cCcccCcEEEccCccCcCCC-----ccccCCCCCCEEEccCCCCC-----ccchhhhCCCCCCeeecCCCCCCCCCch-
Q 047708 159 -SFLINLRTLSLHDCRRFGDL-----PLIGELSLLEILDLSKSDVS-----EIPISFGRLSHLRLLDLTDCDDLELIPR- 226 (397)
Q Consensus 159 -~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~~~~~- 226 (397)
...++|++|++++|.+.... ..+...++|++|++++|.+. .++..+...++|++|++++| .++....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHH
Confidence 24678999999999875421 24578899999999999987 34567788899999999994 5554322
Q ss_pred ---hhhcCCCCCCEEEeecccccc
Q 047708 227 ---GVLSRLRKLEELYMSRSFHHW 247 (397)
Q Consensus 227 ---~~~~~l~~L~~L~l~~~~~~~ 247 (397)
..+...++|++|++++|.+..
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCH
Confidence 124567899999999999875
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.61 E-value=6.1e-08 Score=88.34 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=26.5
Q ss_pred hcCcccCcEEEccCccCcCCCccccCCCCCCEEEccCCCCC-ccchhhh--CCCCCCeeecC
Q 047708 158 LSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSKSDVS-EIPISFG--RLSHLRLLDLT 216 (397)
Q Consensus 158 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~--~l~~L~~L~l~ 216 (397)
+..+++|+.|+++++.....+ .+ .+++|++|++..|.+. .....+. .+++|++|+++
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~-~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIG-KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCC-SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCceec-cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 344556666666554211211 22 2556666666555544 1112222 45566665553
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.60 E-value=3.6e-07 Score=84.76 Aligned_cols=63 Identities=10% Similarity=-0.002 Sum_probs=36.8
Q ss_pred hhcccccccccceecccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEec
Q 047708 316 RKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFG 381 (397)
Q Consensus 316 ~~~~~~~~~L~~L~l~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~ 381 (397)
...|..|.+|+.+.+...++.++..-+....+|+.+.|.. +++.+. .....++++|+.+++..
T Consensus 313 ~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~-~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPL--SLRKIG-ANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCT--TCCEEC-TTTBTTCTTCCEEEEEG
T ss_pred hhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECc--cccEeh-HHHhhCCCCCCEEEECC
Confidence 3344557778888775556666544332224777777753 355543 22334677788887754
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.44 E-value=1.4e-07 Score=86.03 Aligned_cols=80 Identities=20% Similarity=0.174 Sum_probs=51.4
Q ss_pred CCCCccEEEccCCCCc---------ccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEEccCccCcCCC-ccc-
Q 047708 113 ECPKLQALLLQENSLL---------VIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDL-PLI- 181 (397)
Q Consensus 113 ~~~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~- 181 (397)
++++|+.|.+...... .-...++..+|+|+.|.++++....++. + .+++|+.|++..|.+.... ..+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 4677888877544211 0122456788999999998874333443 3 3788999999887753322 133
Q ss_pred -cCCCCCCEEEccC
Q 047708 182 -GELSLLEILDLSK 194 (397)
Q Consensus 182 -~~l~~L~~L~l~~ 194 (397)
..+++|++|+++.
T Consensus 215 ~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 215 GSDLPNLEKLVLYV 228 (362)
T ss_dssp HSBCTTCCEEEEEC
T ss_pred HccCCCCcEEEEec
Confidence 3789999998853
No 150
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.41 E-value=8.4e-08 Score=92.90 Aligned_cols=70 Identities=10% Similarity=0.093 Sum_probs=51.5
Q ss_pred CCCccccHHHHHHHHHhh--ccccccccHHHHHHHHHHHHHHHhhcceeeecC--CcCeEEechHHHHHHHHHhcccce
Q 047708 1 QEDYNIPIEVLARYGWGL--RCLQNVDSVEKARGRARSAVSTLIFSYLLIDGG--KEGYVKMHDVVRYVAQQIASKNKF 75 (397)
Q Consensus 1 P~~~~~~~~~Li~~Wia~--g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~--~~~~~~~hd~~~~~~~~~~~~~~~ 75 (397)
|+||.|+ |++|+|+ ||+...+.....++.++ ||++|+++||++... ...+|+|||++|++++.++.+++.
T Consensus 400 p~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 400 PPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 8899998 8999999 99975431122455566 999999999999873 345799999999999998875443
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.32 E-value=6.6e-06 Score=76.17 Aligned_cols=270 Identities=13% Similarity=0.073 Sum_probs=139.3
Q ss_pred cCceEEccCCCcccCCCcC--CCCCccEEEccCCC---CcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEE
Q 047708 94 DLTGISLMFNDIHEVPDEL--ECPKLQALLLQENS---LLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTL 167 (397)
Q Consensus 94 ~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L 167 (397)
.|+.+.+.. .++.+.... +|++|+.+.+..+. +..+....|..+.+|+.+.+..+ +..+ ...+..+.+|+.+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 367777753 355554433 77888888886653 66677777777877777766543 3333 2345667778877
Q ss_pred EccCccCcCCCccccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccc
Q 047708 168 SLHDCRRFGDLPLIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHW 247 (397)
Q Consensus 168 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 247 (397)
.+......-....+..+..|+.+.+..+ ++.+....-...+|+.+.+.. ....+....+..+..+............
T Consensus 143 ~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~--~~~~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 143 TIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPA--KVTRIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECT--TCCEECTTTTTTCTTCCEEEECCSSSCB
T ss_pred cccceeeeecccceecccccccccccce-eeEeccccccccceeEEEECC--cccccccchhhhccccceeccccccccc
Confidence 7765322111125667777777777543 444443322335566666543 1223333335555555555443221110
Q ss_pred cccC-----------------C--------CccCccccccccCCCCCCCEEEEeccCCCCCCCccc-CCCccEEEEEecC
Q 047708 248 QFEG-----------------E--------EDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSDMS-FQNLTSFSITIGD 301 (397)
Q Consensus 248 ~~~~-----------------~--------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~ 301 (397)
.-.. . .+.........+..+.+|+.+.+......--...+. +++|+.+.+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~- 298 (394)
T 4gt6_A 220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR- 298 (394)
T ss_dssp SSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-
T ss_pred ccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccceecCcccccccccccccCCCc-
Confidence 0000 0 000000011234566777777765433211112233 667777665311
Q ss_pred cccchhhhHHHHhhhhcccccccccceecccccccchHHHHHHHhhccceecccCCChhhhhhccccCCCCCccEEEEec
Q 047708 302 LAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDLANDGFNELMFLGIFG 381 (397)
Q Consensus 302 ~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~ 381 (397)
+..++...|..|.+|+.+.+...++.+...-+....+|+.+.|.. +++.+. .....++++|+.+++.+
T Consensus 299 ---------i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~-~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 299 ---------ITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPS--SVTKIP-ESAFSNCTALNNIEYSG 366 (394)
T ss_dssp ---------CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECT--TCCBCC-GGGGTTCTTCCEEEESS
T ss_pred ---------ccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECc--ccCEEh-HhHhhCCCCCCEEEECC
Confidence 223333444557777777775556666544333224777777752 344443 22334667777777654
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=2.2e-06 Score=68.85 Aligned_cols=91 Identities=11% Similarity=0.107 Sum_probs=55.4
Q ss_pred CCCEEEEeccCCCCC-CCccc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceecccccccchHHHHHHHh
Q 047708 269 RLTSLHIHIPNGKIM-SSDMS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLL 346 (397)
Q Consensus 269 ~L~~L~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~lp~~~~~~~~ 346 (397)
+|++|+++++.++.. -..+. +++|++|+++.|...++ .++..++. . ....+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD---~gL~~L~~--------------------~----~~~~~ 114 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED---GCLERLSQ--------------------L----ENLQK 114 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH---HHHHHHHT--------------------C----HHHHH
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH---HHHHHHHh--------------------c----ccccC
Confidence 466666666653221 11233 66666666666654433 22333333 0 00114
Q ss_pred hccceecccCCChhhhhhccccCCCCCccEEEEeccCCceE
Q 047708 347 RSEILALVDVNDLENIVSDLANDGFNELMFLGIFGCNEMKC 387 (397)
Q Consensus 347 ~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~i~~c~~L~~ 387 (397)
+|++|+|++|+++++..... ...+++|++|+|++|+.++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~-L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIA-LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHH-GGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHH-HhcCCCCCEEECCCCCCCCc
Confidence 79999999999888865332 34689999999999998764
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=2e-06 Score=69.14 Aligned_cols=82 Identities=15% Similarity=0.236 Sum_probs=41.8
Q ss_pred cCcEEEccCccCcCC-CccccCCCCCCEEEccCC-CCCc-cchhhhCC----CCCCeeecCCCCCCCCCchhhhcCCCCC
Q 047708 163 NLRTLSLHDCRRFGD-LPLIGELSLLEILDLSKS-DVSE-IPISFGRL----SHLRLLDLTDCDDLELIPRGVLSRLRKL 235 (397)
Q Consensus 163 ~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~-~~~~-lp~~i~~l----~~L~~L~l~~~~~~~~~~~~~~~~l~~L 235 (397)
+|+.|++++|.++.. +..+..+++|++|++++| .++. --..+..+ ++|++|++++|..++......+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 566667766664321 234555666666666666 3441 11233332 2455666655555554333334555555
Q ss_pred CEEEeeccc
Q 047708 236 EELYMSRSF 244 (397)
Q Consensus 236 ~~L~l~~~~ 244 (397)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555554
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.10 E-value=2.3e-05 Score=72.49 Aligned_cols=260 Identities=11% Similarity=0.066 Sum_probs=134.8
Q ss_pred cccccCceEEccCCC---cccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccC
Q 047708 90 NKFEDLTGISLMFND---IHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINL 164 (397)
Q Consensus 90 ~~~~~l~~l~l~~~~---~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L 164 (397)
..+.+|+.+.+..+. ++.+.... .|..|+.+.+..+ +..+....|..+.+|+.+.+......--...+..+..|
T Consensus 84 ~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L 162 (394)
T 4gt6_A 84 YNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSL 162 (394)
T ss_dssp TTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTC
T ss_pred hCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccceeeeecccceeccccc
Confidence 457788888886542 44444333 6777777666543 45556666777888888877643221112345556666
Q ss_pred cEEEccCccCcCCCc-cccCCCCCCEEEccCCCCCccchhhhCCCCCCeeecCC--------------------------
Q 047708 165 RTLSLHDCRRFGDLP-LIGELSLLEILDLSKSDVSEIPISFGRLSHLRLLDLTD-------------------------- 217 (397)
Q Consensus 165 ~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~-------------------------- 217 (397)
+.+.+..+-. .... .+. ..+|+.+.+...-...-...+..+.++.......
T Consensus 163 ~~i~~~~~~~-~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T 4gt6_A 163 HTVTLPDSVT-AIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPS 240 (394)
T ss_dssp CEEECCTTCC-EECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCT
T ss_pred ccccccceee-Eecccccc-ccceeEEEECCcccccccchhhhccccceecccccccccccceeeccccccccccccccc
Confidence 6666654311 1111 221 2345555443321111111222222222221110
Q ss_pred ---------CCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCCCEEEEeccCCCCCCCc-c
Q 047708 218 ---------CDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRLTSLHIHIPNGKIMSSD-M 287 (397)
Q Consensus 218 ---------~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~ 287 (397)
...+..+....+..+..|+.+.+...... .....+..+++|+.+.+.. ....++.. +
T Consensus 241 ~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~------------I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF 307 (394)
T 4gt6_A 241 QREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS------------IGTGAFMNCPALQDIEFSS-RITELPESVF 307 (394)
T ss_dssp TCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE------------ECTTTTTTCTTCCEEECCT-TCCEECTTTT
T ss_pred ccccceEEcCCcceEcccceeeecccccEEecccccce------------ecCcccccccccccccCCC-cccccCceee
Confidence 01122333344667788888877543321 1234566788888888853 34445544 4
Q ss_pred c-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceecccccccchHHHHHHHhhccceecccCCChhhhhhcc
Q 047708 288 S-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRSEILALVDVNDLENIVSDL 366 (397)
Q Consensus 288 ~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 366 (397)
. |.+|+.+.+..+ +..++...|..|.+|+++.+...++.++..-+....+|+.+++.+. ...+. .
T Consensus 308 ~~c~~L~~i~lp~~----------v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~--~~~~~-~- 373 (394)
T 4gt6_A 308 AGCISLKSIDIPEG----------ITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGS--RSQWN-A- 373 (394)
T ss_dssp TTCTTCCEEECCTT----------CCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSC--HHHHH-T-
T ss_pred cCCCCcCEEEeCCc----------ccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCc--eeehh-h-
Confidence 4 888998887522 2234444556689999999966677776554433258888888752 22222 1
Q ss_pred ccCCCCCccEEEEe
Q 047708 367 ANDGFNELMFLGIF 380 (397)
Q Consensus 367 ~~~~~~~L~~L~i~ 380 (397)
...+..|+.+.+.
T Consensus 374 -~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 374 -ISTDSGLQNLPVA 386 (394)
T ss_dssp -CBCCCCC------
T ss_pred -hhccCCCCEEEeC
Confidence 2245666666654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.06 E-value=2.4e-06 Score=70.14 Aligned_cols=111 Identities=13% Similarity=0.085 Sum_probs=56.7
Q ss_pred hcCCCcccEEEcCCC-CCCC-----CChhhcCcccCcEEEccCccCcCCC-----ccccCCCCCCEEEccCCCCCc----
Q 047708 135 FQGMKDLKVLDMGGI-RGFS-----LPSSLSFLINLRTLSLHDCRRFGDL-----PLIGELSLLEILDLSKSDVSE---- 199 (397)
Q Consensus 135 ~~~l~~L~~L~l~~~-~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~~~~~~---- 199 (397)
+...++|++|++++| .+.. +...+...++|++|++++|.+...- ..+...++|++|++++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 455666666666666 5521 2333444555666666666553211 123344556666666666552
Q ss_pred -cchhhhCCCCCCeeec--CCCCCCCCCch----hhhcCCCCCCEEEeeccccc
Q 047708 200 -IPISFGRLSHLRLLDL--TDCDDLELIPR----GVLSRLRKLEELYMSRSFHH 246 (397)
Q Consensus 200 -lp~~i~~l~~L~~L~l--~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~ 246 (397)
+...+...++|++|++ ++ +.++.... ..+...++|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445555566666666 44 33332111 11344556666666666543
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.03 E-value=1.5e-05 Score=73.74 Aligned_cols=212 Identities=11% Similarity=0.126 Sum_probs=132.3
Q ss_pred CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCccCcCCCccccCCCCCCEEE
Q 047708 113 ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILD 191 (397)
Q Consensus 113 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 191 (397)
+|++|+.+.+..+ ...++...|.++.+|+.+.+..+ +..+ ...+.++..|+.+.+..+... ..........|+.+.
T Consensus 160 ~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ 236 (394)
T 4fs7_A 160 TCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNII 236 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEE
T ss_pred ccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEE
Confidence 7889999998754 45567777899999999988765 3333 335666777777776554321 112233446777777
Q ss_pred ccCCCCCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccccccccCCCccCccccccccCCCCCC
Q 047708 192 LSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFHHWQFEGEEDSSSNAKFIELGSLSRL 270 (397)
Q Consensus 192 l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 270 (397)
+... ++.+. ..+..+..|+.+.+..+ ...+....+..+..++.+......+. -..+..+.+|
T Consensus 237 ip~~-~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~--------------~~~F~~~~~L 299 (394)
T 4fs7_A 237 IPDS-FTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVP--------------EKTFYGCSSL 299 (394)
T ss_dssp ECTT-CCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEEC--------------TTTTTTCTTC
T ss_pred ECCC-ceecccccccccccceeEEcCCC--cceeeccccccccccceeccCceeec--------------cccccccccc
Confidence 7543 33333 35667788888877652 33455555777888888776543322 1345667888
Q ss_pred CEEEEeccCCCCCCCc-cc-CCCccEEEEEecCcccchhhhHHHHhhhhcccccccccceecccccccchHHHHHHHhhc
Q 047708 271 TSLHIHIPNGKIMSSD-MS-FQNLTSFSITIGDLAAGFISAAIEVFSRKFKKRCSRAMGLSQDMRISGVHSWIKNLLLRS 348 (397)
Q Consensus 271 ~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~lp~~~~~~~~~L 348 (397)
+.+.+..+ ...+... +. +.+|+.+++... +..++...|..|.+|+.+.+...+..++...+....+|
T Consensus 300 ~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~----------v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 300 TEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL----------VEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINL 368 (394)
T ss_dssp CEEEECTT-CCEECTTTTTTCTTCCEECCCTT----------CCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTC
T ss_pred cccccccc-cceechhhhcCCCCCCEEEeCCc----------ccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCC
Confidence 88888654 3344333 44 788888876421 22334444556888888888555766665433322578
Q ss_pred cceeccc
Q 047708 349 EILALVD 355 (397)
Q Consensus 349 ~~L~l~~ 355 (397)
+.++|..
T Consensus 369 ~~i~lp~ 375 (394)
T 4fs7_A 369 KKVELPK 375 (394)
T ss_dssp CEEEEEG
T ss_pred CEEEECC
Confidence 8887763
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.95 E-value=5.2e-06 Score=68.07 Aligned_cols=106 Identities=16% Similarity=0.149 Sum_probs=71.8
Q ss_pred CCCCccEEEccCC-CCcccC----hhhhcCCCcccEEEcCCCCCCC-----CChhhcCcccCcEEEccCccCcCC-----
Q 047708 113 ECPKLQALLLQEN-SLLVIP----DRFFQGMKDLKVLDMGGIRGFS-----LPSSLSFLINLRTLSLHDCRRFGD----- 177 (397)
Q Consensus 113 ~~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~----- 177 (397)
..+.|+.|++++| .+.+-. ...+...++|++|++++|.+.. +...+...++|++|++++|.+...
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4567777777777 544321 1224567788888888887732 344455567788888888877432
Q ss_pred CccccCCCCCCEEEc--cCCCCC-----ccchhhhCCCCCCeeecCCC
Q 047708 178 LPLIGELSLLEILDL--SKSDVS-----EIPISFGRLSHLRLLDLTDC 218 (397)
Q Consensus 178 ~~~~~~l~~L~~L~l--~~~~~~-----~lp~~i~~l~~L~~L~l~~~ 218 (397)
...+...++|++|++ ++|.+. .+...+...++|++|++++|
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 225667778888888 778777 24566677788999998874
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.82 E-value=2e-05 Score=68.13 Aligned_cols=102 Identities=21% Similarity=0.195 Sum_probs=71.8
Q ss_pred CCccE--EEccCCCCcccC---hhhhcCCCcccEEEcCCCCCCCC---ChhhcCcccCcEEEccCccCcCCCccccCCC-
Q 047708 115 PKLQA--LLLQENSLLVIP---DRFFQGMKDLKVLDMGGIRGFSL---PSSLSFLINLRTLSLHDCRRFGDLPLIGELS- 185 (397)
Q Consensus 115 ~~L~~--L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~- 185 (397)
+.|.. ++++.|....++ ..+..++++|+.|+|++|.+..+ |..+..+++|++|++++|.+... ..+..+.
T Consensus 141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~ 219 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKG 219 (267)
T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTT
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhccc
Confidence 44444 555666522222 22335789999999999998654 46677899999999999998654 3333333
Q ss_pred -CCCEEEccCCCCC-ccc-------hhhhCCCCCCeeecCC
Q 047708 186 -LLEILDLSKSDVS-EIP-------ISFGRLSHLRLLDLTD 217 (397)
Q Consensus 186 -~L~~L~l~~~~~~-~lp-------~~i~~l~~L~~L~l~~ 217 (397)
+|++|++.+|.+. .+| ..+..+++|+.|+-..
T Consensus 220 l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 220 LKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp SCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred CCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcC
Confidence 8999999999887 344 3477899999997543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.82 E-value=1.5e-05 Score=68.86 Aligned_cols=104 Identities=19% Similarity=0.196 Sum_probs=71.5
Q ss_pred hcCCCcccE--EEcCCCCCCCCCh----hhcCcccCcEEEccCccCcCCC--c-cccCCCCCCEEEccCCCCCccchhhh
Q 047708 135 FQGMKDLKV--LDMGGIRGFSLPS----SLSFLINLRTLSLHDCRRFGDL--P-LIGELSLLEILDLSKSDVSEIPISFG 205 (397)
Q Consensus 135 ~~~l~~L~~--L~l~~~~~~~l~~----~~~~l~~L~~L~l~~~~~~~~~--~-~~~~l~~L~~L~l~~~~~~~lp~~i~ 205 (397)
+...+.|.. ++++.|....++. ...++++|+.|++++|.+.... + .+..+++|+.|++++|.++.+ ..+.
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhh
Confidence 344444544 4566664433322 2245789999999999987643 2 556899999999999999876 3344
Q ss_pred CCC--CCCeeecCCCCCCCCCc------hhhhcCCCCCCEEE
Q 047708 206 RLS--HLRLLDLTDCDDLELIP------RGVLSRLRKLEELY 239 (397)
Q Consensus 206 ~l~--~L~~L~l~~~~~~~~~~------~~~~~~l~~L~~L~ 239 (397)
.+. +|+.|++.+|...+.+| ..++..+++|+.|+
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 444 89999999966554454 23477899999987
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.77 E-value=0.00042 Score=63.51 Aligned_cols=77 Identities=9% Similarity=0.105 Sum_probs=39.7
Q ss_pred ccccCceEEccCCCcccCCCcC--CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCCChhhcCcccCcEEE
Q 047708 91 KFEDLTGISLMFNDIHEVPDEL--ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSLPSSLSFLINLRTLS 168 (397)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~ 168 (397)
...+++.+.+. ..++.++... +|.+|+.+.+..+ +..+....|.++ +|..+.+..+ +..++...-...+|+.+.
T Consensus 44 ~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~ 119 (379)
T 4h09_A 44 DRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFE 119 (379)
T ss_dssp GGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEE
T ss_pred cccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCccccc
Confidence 34566676665 3455554433 6777777777543 555566666665 4555554332 222222222223555555
Q ss_pred ccC
Q 047708 169 LHD 171 (397)
Q Consensus 169 l~~ 171 (397)
+..
T Consensus 120 lp~ 122 (379)
T 4h09_A 120 FPG 122 (379)
T ss_dssp CCT
T ss_pred CCC
Confidence 543
No 161
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.96 E-value=0.00048 Score=69.93 Aligned_cols=56 Identities=14% Similarity=0.077 Sum_probs=48.0
Q ss_pred CCCccccHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhhcceeeecCCcCeEEechHHHHHHH
Q 047708 1 QEDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEGYVKMHDVVRYVAQ 67 (397)
Q Consensus 1 P~~~~~~~~~Li~~Wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~hd~~~~~~~ 67 (397)
|+++.|+++.++.+|+++|. +.+.+++++|+++||++..+....|+|||++++++.
T Consensus 382 Ped~~I~~elLa~LW~aeGe-----------edAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 382 PPSAHIPTILLSLIWFDVIK-----------SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp CTTSCEEHHHHHHHHCSSCS-----------HHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHhcCCCH-----------HHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 78999999999999999981 127789999999999998655678999999999653
No 162
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.84 E-value=0.0012 Score=70.20 Aligned_cols=60 Identities=15% Similarity=0.104 Sum_probs=50.4
Q ss_pred CCCccccHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhhcceeeecCCcC--eEEechHHHHHHHHHhcc
Q 047708 1 QEDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGGKEG--YVKMHDVVRYVAQQIASK 72 (397)
Q Consensus 1 P~~~~~~~~~Li~~Wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~--~~~~hd~~~~~~~~~~~~ 72 (397)
|+++.|+++.++.+|.+++ +.+++++++|++++|++...... .|+||+++|++++..+.+
T Consensus 390 ~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 390 QKDVKVPTKVLCVLWDLET------------EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp CTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred CCCCeeCHHHHHHHhCCCH------------HHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 7899999999999998763 33788999999999999773322 599999999999988663
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.76 E-value=0.017 Score=52.69 Aligned_cols=125 Identities=18% Similarity=0.136 Sum_probs=85.5
Q ss_pred CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccCccCcCCCc-cccCCCCCCEE
Q 047708 113 ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEIL 190 (397)
Q Consensus 113 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L 190 (397)
.+..|+.+.+..+ +..+....|.++..|+.+.+..+ +..+ ...+.++.+|+.+.+..+ +..... .+..+.+|+.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 5667777776543 44455556778888888888664 3333 335566777888887653 222222 67788888888
Q ss_pred EccCCCCCccc-hhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeec
Q 047708 191 DLSKSDVSEIP-ISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSR 242 (397)
Q Consensus 191 ~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 242 (397)
.+..+.++.++ ..+.++.+|+.+.+.. .++.+....|.++++|+.+.+..
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 88877777765 4677888888888864 36677777788888888887754
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.15 E-value=0.011 Score=44.89 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=36.5
Q ss_pred eEEccCCCcc--cCCCcCCCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCCC
Q 047708 97 GISLMFNDIH--EVPDELECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIRG 151 (397)
Q Consensus 97 ~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 151 (397)
.++.+++.++ .+|..+ .+.|+.|++++|.+..++...|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5566666666 566433 23577777777777777777777777777777777765
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.83 E-value=0.016 Score=43.98 Aligned_cols=54 Identities=22% Similarity=0.401 Sum_probs=35.3
Q ss_pred EEEccCCCCC--ccchhhhCCCCCCeeecCCCCCCCCCchhhhcCCCCCCEEEeecccc
Q 047708 189 ILDLSKSDVS--EIPISFGRLSHLRLLDLTDCDDLELIPRGVLSRLRKLEELYMSRSFH 245 (397)
Q Consensus 189 ~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 245 (397)
.++.++.+++ .+|..+. .+|++|++++ +.++.++.+.+..+++|+.|+|.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 5556666666 6665432 3567777777 666677776667777777777776654
No 166
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=94.97 E-value=0.028 Score=54.63 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=46.7
Q ss_pred CCCccccHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhhcceeeecC--CcCeEEechHHHHHHHHHh
Q 047708 1 QEDYNIPIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDGG--KEGYVKMHDVVRYVAQQIA 70 (397)
Q Consensus 1 P~~~~~~~~~Li~~Wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~--~~~~~~~hd~~~~~~~~~~ 70 (397)
|+|+.|+...++.+|.+++ +.+.+++++|++++|++... ....|+||+++++++....
T Consensus 390 ~~~~~i~~~~l~~l~~~~~------------~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 390 QKDVKVPTKVLCILWDMET------------EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp CTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred CCCCccCHHHHHHHhccCH------------HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 6788999999999997652 12678999999999998652 3347999999999998873
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.95 E-value=0.03 Score=45.57 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=37.0
Q ss_pred cCCCcccEEEcCCC-CCC-----CCChhhcCcccCcEEEccCccCcCCC-----ccccCCCCCCEEEccCCCCC-----c
Q 047708 136 QGMKDLKVLDMGGI-RGF-----SLPSSLSFLINLRTLSLHDCRRFGDL-----PLIGELSLLEILDLSKSDVS-----E 199 (397)
Q Consensus 136 ~~l~~L~~L~l~~~-~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~~~~~-----~ 199 (397)
.+-+.|+.|+|+++ .++ .+...+..-+.|+.|++++|.+...- ..+..-+.|++|++++|.+. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34445555555543 332 12233334445555555555542110 12223345555555555554 2
Q ss_pred cchhhhCCCCCCeeecCC
Q 047708 200 IPISFGRLSHLRLLDLTD 217 (397)
Q Consensus 200 lp~~i~~l~~L~~L~l~~ 217 (397)
+...+..-+.|+.|++++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 233444444566666654
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.90 E-value=0.042 Score=44.73 Aligned_cols=104 Identities=8% Similarity=-0.016 Sum_probs=60.2
Q ss_pred CCCccEEEccCC-CCcccC----hhhhcCCCcccEEEcCCCCCC-----CCChhhcCcccCcEEEccCccCcCCC-----
Q 047708 114 CPKLQALLLQEN-SLLVIP----DRFFQGMKDLKVLDMGGIRGF-----SLPSSLSFLINLRTLSLHDCRRFGDL----- 178 (397)
Q Consensus 114 ~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~----- 178 (397)
-+.|+.|+++++ .+++-. ...+..-..|+.|+|++|.++ .+...+..-+.|++|++++|.+...-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 355666666664 443211 122355677788888877773 33444555667888888887764321
Q ss_pred ccccCCCCCCEEEccCCC---CC-----ccchhhhCCCCCCeeecCC
Q 047708 179 PLIGELSLLEILDLSKSD---VS-----EIPISFGRLSHLRLLDLTD 217 (397)
Q Consensus 179 ~~~~~l~~L~~L~l~~~~---~~-----~lp~~i~~l~~L~~L~l~~ 217 (397)
..+..-..|++|+++++. +. .+...+..-+.|+.|+++.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 134445568888887542 23 2334455556677777654
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=37.35 E-value=36 Score=23.77 Aligned_cols=43 Identities=16% Similarity=0.089 Sum_probs=18.3
Q ss_pred cccChhhhcCCCcccEEEcCCCCCCCC-ChhhcCcccCcEEEccC
Q 047708 128 LVIPDRFFQGMKDLKVLDMGGIRGFSL-PSSLSFLINLRTLSLHD 171 (397)
Q Consensus 128 ~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~ 171 (397)
..+....|.+|.+|+.+.+..+ +..+ ...+.++.+|+.+.+.+
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3344444555555555554432 1222 22344444454444443
No 170
>2kzc_A Uncharacterized protein; DUF1476, JCSG, structutral genomics, PSI-biology, protein ST initiative, structural genomics; NMR {Jannaschia SP}
Probab=35.50 E-value=21 Score=24.10 Aligned_cols=37 Identities=11% Similarity=-0.077 Sum_probs=26.7
Q ss_pred cHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhhcceeeec
Q 047708 7 PIEVLARYGWGLRCLQNVDSVEKARGRARSAVSTLIFSYLLIDG 50 (397)
Q Consensus 7 ~~~~Li~~Wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 50 (397)
++++|+-+|.|+=+-. +.++ ++.|..+++..-|-+++
T Consensus 9 RRNklLglWAAe~lGl---tg~~----aeaYa~~vv~adfee~g 45 (85)
T 2kzc_A 9 RRNKLMGLWVAEVLGK---SGDE----ANAYAAEVVKADFEEAG 45 (85)
T ss_dssp HHHHHHHHHHHHHHTC---CHHH----HHHHHHHGGGSSSSSSS
T ss_pred HHHHHHHHHHHHHcCC---CHHH----HHHHHHHHHHHhcccCC
Confidence 5889999999996532 2222 67788888888777665
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.48 E-value=55 Score=22.76 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=25.9
Q ss_pred CCCCccEEEccCCCCcccChhhhcCCCcccEEEcCCCC
Q 047708 113 ECPKLQALLLQENSLLVIPDRFFQGMKDLKVLDMGGIR 150 (397)
Q Consensus 113 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 150 (397)
+|..|+.+.+... +..+....|.+|.+|+.+.+.+..
T Consensus 18 ~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 18 GNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp TCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 6777777777654 455555668888888888887643
Done!