BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047709
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
Length = 336
Score = 129 bits (324), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 81/104 (77%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKVLP LNGKLTGM+FR+P K A+YD IK+A K AS+G++KGI GY
Sbjct: 218 VGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGY 277
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
+E+D+VSTDFVGD+RSSIFDAKAGI+L+DNF KLV+WYD++ +
Sbjct: 278 VEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGY 321
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3V1Y|O Chain O, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|A Chain A, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|B Chain B, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|C Chain C, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
Length = 337
Score = 129 bits (324), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 81/104 (77%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKVLP LNGKLTGM+FR+P K A+YD IK+A K AS+G++KGI GY
Sbjct: 219 VGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGY 278
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
+E+D+VSTDFVGD+RSSIFDAKAGI+L+DNF KLV+WYD++ +
Sbjct: 279 VEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGY 322
>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAE|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
Length = 330
Score = 128 bits (322), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 77/104 (74%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKVLP LNGKLTGMAFR+P K ATY+ IKAA K A++GEMKG+ GY
Sbjct: 214 VGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGY 273
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
EDDVVSTDF G+ +S+FDAKAGI+L+DNF KLVSWYD++ +
Sbjct: 274 TEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDTETGY 317
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 331
Score = 128 bits (322), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 77/104 (74%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKVLP LNGKLTGMAFR+P K ATY+ IKAA K A++GEMKG+ GY
Sbjct: 215 VGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGY 274
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
EDDVVSTDF G+ +S+FDAKAGI+L+DNF KLVSWYD++ +
Sbjct: 275 TEDDVVSTDFNGEVXTSVFDAKAGIALNDNFVKLVSWYDNETGY 318
>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAD|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
Length = 330
Score = 128 bits (321), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 77/104 (74%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKVLP LNGKLTGMAFR+P K ATY+ IKAA K A++GEMKG+ GY
Sbjct: 214 VGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGY 273
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
EDDVVSTDF G+ +S+FDAKAGI+L+DNF KLVSWYD++ +
Sbjct: 274 TEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGY 317
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of
Glyceraldehyde 3- Phosphate Dehydrogenase From
Escherichia Coli
Length = 331
Score = 128 bits (321), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 77/104 (74%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKVLP LNGKLTGMAFR+P K ATY+ IKAA K A++GEMKG+ GY
Sbjct: 215 VGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGY 274
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
EDDVVSTDF G+ +S+FDAKAGI+L+DNF KLVSWYD++ +
Sbjct: 275 TEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGY 318
>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|B Chain B, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|C Chain C, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|D Chain D, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHY|A Chain A, Gapdh Complexed With Adp-Ribose
pdb|1IHY|B Chain B, Gapdh Complexed With Adp-Ribose
pdb|1IHY|C Chain C, Gapdh Complexed With Adp-Ribose
pdb|1IHY|D Chain D, Gapdh Complexed With Adp-Ribose
Length = 333
Score = 126 bits (317), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 76/106 (71%), Gaps = 13/106 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKV+P L+GKLTGMAFR+P K+ +YDDIKAA K AS+G ++G+ GY
Sbjct: 213 VGKVIPELDGKLTGMAFRVPTPNVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGVLGY 272
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAFEK 93
EDDVVS DF GDNRSSIFDAKAGI LS F K+VSWYD++ + +
Sbjct: 273 TEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQ 318
>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|1GPD|R Chain R, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 334
Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 77/106 (72%), Gaps = 13/106 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKV+P L+GKLTGMAFR+P K+ +YDDIKAA K AS+G ++G GY
Sbjct: 214 VGKVIPELDGKLTGMAFRVPTPDVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGY 273
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAFEK 93
EDDVVS+DF+GDNRSSIFDAKAGI LS F K+VSWYD++ + +
Sbjct: 274 TEDDVVSSDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQ 319
>pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|2 Chain 2, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|3 Chain 3, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|4 Chain 4, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
Length = 333
Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 77/106 (72%), Gaps = 13/106 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKV+P L+GKLTGMAFR+P K+ +YDDIKAA K AS+G ++G GY
Sbjct: 213 VGKVIPELDGKLTGMAFRVPTPDVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGY 272
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAFEK 93
EDDVVS+DF+GDNRSSIFDAKAGI LS F K+VSWYD++ + +
Sbjct: 273 TEDDVVSSDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQ 318
>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1SZJ|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1CRW|G Chain G, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
pdb|1CRW|R Chain R, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
Length = 333
Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 76/106 (71%), Gaps = 13/106 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKV+P L+GKLTGMAFR+P K+ +YDDIKAA K AS+G ++G+ GY
Sbjct: 213 VGKVIPELDGKLTGMAFRVPTPNVSVVDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGY 272
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAFEK 93
EDDVVS DF GDNRSSIFDAKAGI LS F K+VSWYD++ + +
Sbjct: 273 TEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQ 318
>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
pdb|1DSS|R Chain R, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
Length = 333
Score = 126 bits (316), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 76/106 (71%), Gaps = 13/106 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKV+P L+GKLTGMAFR+P K+ +YDDIKAA K AS+G ++G+ GY
Sbjct: 213 VGKVIPELDGKLTGMAFRVPTPNVSVVDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGY 272
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAFEK 93
EDDVVS DF GDNRSSIFDAKAGI LS F K+VSWYD++ + +
Sbjct: 273 TEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQ 318
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC4|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 122 bits (305), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 75/104 (72%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKVLP LNGKLTG AFR+P K ATY+ IKAA K A++GE KG+ GY
Sbjct: 214 VGKVLPELNGKLTGXAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEXKGVLGY 273
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
EDDVVSTDF G+ +S+FDAKAGI+L+DNF KLVSWYD++ +
Sbjct: 274 TEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGY 317
>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
Length = 334
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 72/106 (67%), Gaps = 13/106 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKV+P L+GKLTGMAFR+P K A YDDIK KEAS+G +KGI GY
Sbjct: 216 VGKVIPELDGKLTGMAFRVPTANVSVLDLTCRLEKPAKYDDIKKVVKEASEGPLKGILGY 275
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAFEK 93
ED+VVS DF G N SSIFDA AGI L+D F KLVSWYD++ + +
Sbjct: 276 TEDEVVSDDFNGSNHSSIFDAGAGIELNDTFVKLVSWYDNEFGYSE 321
>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 334
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 72/104 (69%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKV+P LNGKLTGMAFR+P + A+Y IK A K A++G M GI Y
Sbjct: 215 VGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLAQPASYTAIKEAVKAAAKGPMAGILAY 274
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
ED VVSTDF GD+ SSIFDAKAGI+L+DNF KLVSWYD++ +
Sbjct: 275 TEDQVVSTDFNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYGY 318
>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
Length = 345
Score = 115 bits (289), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 74/104 (71%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
VGKVLP LNGKLTG+AFR+P K A Y+++ K+A++G +KGI GY
Sbjct: 228 VGKVLPELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGY 287
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
ED+VVS DFV DNRSSIFD KAG++L+DNF KLVSWYD++ +
Sbjct: 288 TEDEVVSQDFVHDNRSSIFDMKAGLALNDNFFKLVSWYDNEWGY 331
>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|P Chain P, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|Q Chain Q, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|R Chain R, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
Length = 337
Score = 115 bits (289), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 74/104 (71%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
VGKVLP LNGKLTG+AFR+P K A Y+++ K+A++G +KGI GY
Sbjct: 220 VGKVLPELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGY 279
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
ED+VVS DFV DNRSSIFD KAG++L+DNF KLVSWYD++ +
Sbjct: 280 TEDEVVSQDFVHDNRSSIFDMKAGLALNDNFFKLVSWYDNEWGY 323
>pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
pdb|3PYM|B Chain B, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
Length = 332
Score = 115 bits (288), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 72/104 (69%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKVLP L GKLTGMAFR+P K+ TYD+IK K A++G++KG+ GY
Sbjct: 215 VGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGY 274
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
ED VVS+DF+GD+ SSIFDA AGI LS F KLVSWYD++ +
Sbjct: 275 TEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGY 318
>pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase 3 From Saccharomyces Cerevisiae
Length = 340
Score = 115 bits (288), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 72/104 (69%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKVLP L GKLTGMAFR+P K+ TYD+IK K A++G++KG+ GY
Sbjct: 223 VGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGY 282
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
ED VVS+DF+GD+ SSIFDA AGI LS F KLVSWYD++ +
Sbjct: 283 TEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGY 326
>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|P Chain P, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|Q Chain Q, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|R Chain R, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
Length = 332
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 70/104 (67%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKV+P LNGKLTGMAFR+P K A YDDIK K+AS+G +KGI GY
Sbjct: 214 VGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGY 273
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
ED VVS DF D SS FDA AGI+L+D+F KL+SWYD++ +
Sbjct: 274 TEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGY 317
>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
pdb|2I5P|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
Length = 342
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 72/104 (69%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKVLP L GKLTGMAFR+P K ATYD+IKAA K+ S+G++K + GY
Sbjct: 227 VGKVLPELQGKLTGMAFRVPTTDVSVVDLTVKLVKAATYDEIKAAVKKVSEGKLKDVVGY 286
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
ED VVS+DF+GD S+IFDA AGI LS F KLV+WYD++ +
Sbjct: 287 TEDAVVSSDFLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGY 330
>pdb|3H9E|A Chain A, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3H9E|B Chain B, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3PFW|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3PFW|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3H9E|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
pdb|3H9E|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
Length = 346
Score = 112 bits (280), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 70/104 (67%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
V KV+P L GKLTGMAFR+P + A Y IK A K A++G M GI Y
Sbjct: 221 VTKVIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAY 280
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
ED+VVSTDF+GD SSIFDAKAGI+L+DNF KL+SWYD++ +
Sbjct: 281 TEDEVVSTDFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGY 324
>pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|P Chain P, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|Q Chain Q, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|R Chain R, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
Length = 335
Score = 112 bits (279), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 70/104 (67%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKV+P LNGKLTGMAFR+P K A YDDIK K+AS+G +KGI GY
Sbjct: 217 VGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGY 276
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
E VVS+DF D SS FDA AGI+L+D+F KL+SWYD++ +
Sbjct: 277 TEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGY 320
>pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|P Chain P, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|R Chain R, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|Q Chain Q, Crsytal Structure Of Human Liver Gapdh
Length = 338
Score = 112 bits (279), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 70/104 (67%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKV+P LNGKLTGMAFR+P K A YDDIK K+AS+G +KGI GY
Sbjct: 220 VGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGY 279
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
E VVS+DF D SS FDA AGI+L+D+F KL+SWYD++ +
Sbjct: 280 TEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGY 323
>pdb|3CPS|A Chain A, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|3CPS|B Chain B, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 354
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 71/104 (68%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKV+P+LNGKLTGMA R+P K A+ ++I A KEAS G MKGI GY
Sbjct: 235 VGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGY 294
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
DDVVSTDF+G SSIFD A I+L+D+F KL+SWYD+++ +
Sbjct: 295 TSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGY 338
>pdb|1VSU|A Chain A, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|B Chain B, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|C Chain C, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|D Chain D, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|A Chain A, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|B Chain B, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|C Chain C, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|D Chain D, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 71/104 (68%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKV+P+LNGKLTGMA R+P K A+ ++I A KEAS G MKGI GY
Sbjct: 240 VGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGY 299
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
DDVVSTDF+G SSIFD A I+L+D+F KL+SWYD+++ +
Sbjct: 300 TSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGY 343
>pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|B Chain B, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|C Chain C, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|D Chain D, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 108 bits (270), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 70/104 (67%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKV+P+LNGKLTGMA R+P K A+ ++I A KEAS G MKGI GY
Sbjct: 240 VGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGY 299
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
DDVVSTDF+G SSI D A I+L+D+F KL+SWYD+++ +
Sbjct: 300 TSDDVVSTDFIGCKYSSILDKNACIALNDSFVKLISWYDNESGY 343
>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
Length = 361
Score = 98.6 bits (244), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 70/105 (66%), Gaps = 14/105 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEA-SQGEMKGIFG 46
VGK++PSLNGKLTGMAFR+P K A Y+DI AA KEA + G MKGI
Sbjct: 240 VGKIIPSLNGKLTGMAFRVPVPDVSVVDLTCKLAKPAKYEDIVAAVKEAATSGPMKGIIS 299
Query: 47 YIEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
Y +++VVS+DFV SS+FD AGI L+D F KLVSWYD++ +
Sbjct: 300 YTDEEVVSSDFVHCKFSSVFDINAGIMLNDTFVKLVSWYDNEWGY 344
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 68/110 (61%), Gaps = 21/110 (19%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VG V+PS GKLTGM+FR+P + + +I AA K AS+ MKGI GY
Sbjct: 232 VGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGY 291
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDN------FEKLVSWYDSDAAF 91
++++VS DF+ DNRSSI+D+KA +L +N F K+VSWYD++ +
Sbjct: 292 TDEELVSADFINDNRSSIYDSKA--TLQNNLPKERRFFKIVSWYDNEWGY 339
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 68/110 (61%), Gaps = 21/110 (19%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VG V+PS GKLTGM+FR+P + + +I AA K AS+ MKGI GY
Sbjct: 232 VGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGY 291
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDN------FEKLVSWYDSDAAF 91
++++VS DF+ DNRSSI+D+KA +L +N F K+VSWYD++ +
Sbjct: 292 TDEELVSADFINDNRSSIYDSKA--TLQNNLPKERRFFKIVSWYDNEWGY 339
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 71/110 (64%), Gaps = 21/110 (19%)
Query: 1 VGKVLPSLNGKLTGMAFRLPPK---------KATYD----DIKAAHKEASQGEMKGIFGY 47
VG V+PS GKLTGM+FR+P +AT D +I A K+A+Q MKGI G+
Sbjct: 232 VGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGILGF 291
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDN------FEKLVSWYDSDAAF 91
++++VS DF+ DNRSS++D+KA +L +N F K+VSWYD++ A+
Sbjct: 292 TDEELVSADFINDNRSSVYDSKA--TLQNNLPGEKRFFKVVSWYDNEWAY 339
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 71/110 (64%), Gaps = 21/110 (19%)
Query: 1 VGKVLPSLNGKLTGMAFRLPPK---------KATYD----DIKAAHKEASQGEMKGIFGY 47
VG V+PS GKLTGM+FR+P +AT D +I A K+A+Q MKGI G+
Sbjct: 232 VGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGILGF 291
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDN------FEKLVSWYDSDAAF 91
++++VS DF+ DNRSS++D+KA +L +N F K+VSWYD++ A+
Sbjct: 292 TDEELVSADFINDNRSSVYDSKA--TLQNNLPGEKRFFKVVSWYDNEWAY 339
>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|O Chain O, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|P Chain P, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|Q Chain Q, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|R Chain R, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
Length = 359
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 67/110 (60%), Gaps = 21/110 (19%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VG V+PS GKLTGMAFR+P + + +I AA K AS+ MK I GY
Sbjct: 232 VGMVIPSTQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGY 291
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDN------FEKLVSWYDSDAAF 91
++++VS DF+ D+RSSI+D+KA +L +N F K+VSWYD++ +
Sbjct: 292 TDEELVSADFISDSRSSIYDSKA--TLQNNLPNERRFFKIVSWYDNEWGY 339
>pdb|1NQ5|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQO|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
Length = 334
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
V VLP L GKL GMA R+P K+ T +++ AA K A++GE+KGI Y
Sbjct: 215 VALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAY 274
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
E+ +VS D+ G SS DA + + + K+VSWYD++ +
Sbjct: 275 SEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGY 318
>pdb|1NPT|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NQA|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
Length = 334
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
V VLP L GKL GMA R+P K+ T +++ AA K A++GE+KGI Y
Sbjct: 215 VALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAY 274
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
E+ +VS D+ G SS DA + + + K+VSWYD++ +
Sbjct: 275 SEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGY 318
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
V VLP L GKL GMA R+P K+ T +++ AA K A++GE+KGI Y
Sbjct: 215 VALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAY 274
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
E+ +VS D+ G SS DA + + + K+VSWYD++ +
Sbjct: 275 SEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGY 318
>pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
V VLP L GKL GMA R+P K+ T +++ AA K A++GE+KGI Y
Sbjct: 215 VALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAY 274
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
E+ +VS D+ G SS DA + + + K+VSWYD++ +
Sbjct: 275 SEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGY 318
>pdb|1GD1|O Chain O, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|P Chain P, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|Q Chain Q, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|2GD1|O Chain O, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|P Chain P, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|Q Chain Q, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|R Chain R, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|3CMC|O Chain O, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|P Chain P, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|Q Chain Q, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|R Chain R, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
Length = 334
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
V VLP L GKL GMA R+P K+ T +++ AA K A++GE+KGI Y
Sbjct: 215 VALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAY 274
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
E+ +VS D+ G SS DA + + + K+VSWYD++ +
Sbjct: 275 SEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGY 318
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 15/106 (14%)
Query: 1 VGKVLPSLNGKLTGMAFRLP--------------PKKATYDDIKAAHKEASQG-EMKGIF 45
VG VLP L GKL G + R+P K T ++I + ++AS+ E+KGI
Sbjct: 238 VGLVLPELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGIL 297
Query: 46 GYIEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
GY ED +VS+D G++ SSI D + L + F K++SWYD++ +
Sbjct: 298 GYTEDPIVSSDIKGNSHSSIVDGLETMVLENGFAKILSWYDNEFGY 343
>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
pdb|1HDG|Q Chain Q, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
Length = 332
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
V V+P + GKL GMA R+P K+ T +++ A KEA++G +KGI GY
Sbjct: 215 VALVVPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGY 274
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
++ +VS+D +G S IFDA + K+ SWYD++ +
Sbjct: 275 NDEPIVSSDIIGTTFSGIFDATITNVIGGKLVKVASWYDNEYGY 318
>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|P Chain P, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|Q Chain Q, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|R Chain R, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|A Chain A, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|B Chain B, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|C Chain C, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|D Chain D, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
Length = 331
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 14/98 (14%)
Query: 4 VLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIED 50
VLPSL G+ GMA R+P ++ T +++ AA K A++G +KGI Y ED
Sbjct: 216 VLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTED 275
Query: 51 DVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSD 88
++V D V D SSI DAK +L N K+ +WYD++
Sbjct: 276 EIVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYDNE 312
>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|P Chain P, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|Q Chain Q, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|R Chain R, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|A Chain A, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|B Chain B, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|C Chain C, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|D Chain D, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
Length = 331
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 14/98 (14%)
Query: 4 VLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIED 50
VLPSL G+ GMA R+P ++ T +++ AA K A++G +KGI Y ED
Sbjct: 216 VLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTED 275
Query: 51 DVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSD 88
++V D V D SSI DAK +L N K+ +WYD++
Sbjct: 276 EIVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYDNE 312
>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|E Chain E, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|F Chain F, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|G Chain G, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|H Chain H, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
Length = 344
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 55/104 (52%), Gaps = 14/104 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VG VLP LNGKL G A R+P + T ++ A KEAS+G +KGI GY
Sbjct: 227 VGLVLPELNGKLDGYAIRVPTINVSIVDLSFIAKRDTTAAEVNAIMKEASEGALKGILGY 286
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
E +VS DF + SS FDA +S K+ SWYD++ F
Sbjct: 287 NEAPLVSIDFNHNPASSTFDATL-TKVSGRLVKVSSWYDNEWGF 329
>pdb|3DOC|A Chain A, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|B Chain B, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|C Chain C, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|D Chain D, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
Length = 335
Score = 69.3 bits (168), Expect = 5e-13, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
VG VLP L GKL G+A R+P ++ T +++ A +EA+ G +KGI GY
Sbjct: 217 VGLVLPELKGKLDGVAIRVPTPNVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGY 276
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
++ +VS DF D+ SS+F + +++SWYD++ F
Sbjct: 277 TDEKLVSHDFNHDSHSSVFHTDQTKVMDGTMVRILSWYDNEWGF 320
>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Thermus Thermophilus Hb8
Length = 331
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 14/101 (13%)
Query: 4 VLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIED 50
VLPSL G+ GMA R+P ++ T +++ AA K A++G +KGI Y ED
Sbjct: 216 VLPSLKGRFDGMALRVPTPTGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTED 275
Query: 51 DVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
++V D V D SSI D K ++ N K+ +WYD++ +
Sbjct: 276 EIVLRDIVMDPHSSIVDGKLTKAIG-NLVKVFAWYDNEWGY 315
>pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|A Chain A, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|B Chain B, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1RM4|O Chain O, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|A Chain A, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|B Chain B, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|2HKI|A Chain A, Crystal Structure Of Photosynthetic
Glyceraldehyde-3-Phosphate Dehydrogenase A4 Isoform
pdb|2PKQ|P Chain P, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|R Chain R, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|S Chain S, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 337
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 13/106 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
V VLP+L GKL G+A R+P KK +++ AA +E++ E+KGI
Sbjct: 217 VALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSV 276
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAFEK 93
++ +VS DF + SS D+ + + D+ K+++WYD++ + +
Sbjct: 277 CDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQ 322
>pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|A Chain A, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|B Chain B, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 13/106 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
V VLP+L GKL G+A R+P KK +++ AA +E++ E+KGI
Sbjct: 217 VALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSV 276
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAFEK 93
++ +VS DF + SS D+ + + D+ K+++WYD++ + +
Sbjct: 277 CDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQ 322
>pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|A Chain A, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|B Chain B, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 13/106 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
V VLP+L GKL G+A R+P KK +++ AA +E++ E+KGI
Sbjct: 217 VALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSV 276
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAFEK 93
++ +VS DF + SS D+ + + D+ K+++WYD++ + +
Sbjct: 277 CDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQ 322
>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|B Chain B, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|C Chain C, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|D Chain D, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|E Chain E, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|F Chain F, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|G Chain G, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|H Chain H, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
Length = 345
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 13/106 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
+ KVLP LNGKL GMA R+P + T + I A K + G +KGI +
Sbjct: 218 LAKVLPHLNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEF 277
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAFEK 93
E+ +VS DF + S+I D + + + D K+++WYD++ + +
Sbjct: 278 SEEPLVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEWGYSR 323
>pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|R Chain R, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|P Chain P, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|Q Chain Q, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|A Chain A, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|B Chain B, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|C Chain C, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|D Chain D, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|H Chain H, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|I Chain I, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|L Chain L, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|M Chain M, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
Length = 365
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 13/106 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
V VLP+L GKL G+A R+P KK +++ AA +E++ E+KGI
Sbjct: 217 VALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSV 276
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAFEK 93
++ +VS DF + SS D+ + + D+ K+++WYD++ + +
Sbjct: 277 CDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQ 322
>pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|A Chain A, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|B Chain B, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
Length = 335
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 13/106 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
V VLP L GKL G+A R+P KK +++ AA +E++ E+KGI
Sbjct: 215 VALVLPQLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADQELKGILSV 274
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAFEK 93
++ +VS DF + SS D+ + + D+ K+++WYD++ + +
Sbjct: 275 CDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQ 320
>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution.
pdb|1OBF|P Chain P, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution
Length = 335
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 14/104 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VG VLP L+GKL G A R+P + T +++ K AS+GE+KGI Y
Sbjct: 218 VGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDY 277
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
+ +VS D+ D SS DA +S K+ SWYD++ F
Sbjct: 278 NTEPLVSVDYNHDPASSTVDASL-TKVSGRLVKVSSWYDNEWGF 320
>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|B Chain B, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|C Chain C, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|D Chain D, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|E Chain E, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|F Chain F, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|G Chain G, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|H Chain H, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|O Chain O, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|Q Chain Q, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3QV1|A Chain A, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|B Chain B, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|C Chain C, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|D Chain D, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|E Chain E, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|F Chain F, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3RVD|A Chain A, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|B Chain B, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|C Chain C, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|D Chain D, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|E Chain E, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|F Chain F, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|G Chain G, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|H Chain H, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|O Chain O, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|Q Chain Q, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana
Length = 337
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 13/106 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
V VLP+L GKL G+A R+P KK +++ AA +++++ E+KGI
Sbjct: 218 VALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDV 277
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAFEK 93
++ +VS DF + S+ D+ + + D+ K+++WYD++ + +
Sbjct: 278 CDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQ 323
>pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese
pdb|3B1J|B Chain B, Crystal Structure Of Dehydrogenese
pdb|3B1K|A Chain A, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|B Chain B, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|G Chain G, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|H Chain H, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B20|A Chain A, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|B Chain B, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|O Chain O, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|P Chain P, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|Q Chain Q, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|R Chain R, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
Length = 339
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
V V+P L GKL G+A R+P K + + ++ASQ MKGI Y
Sbjct: 219 VALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKY 278
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAFEK 93
+ +VS+DF G + SSI D+ + + + K+++WYD++ + +
Sbjct: 279 SDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQ 324
>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|B Chain B, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|O Chain O, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|P Chain P, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|Q Chain Q, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|R Chain R, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2DUU|A Chain A, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|B Chain B, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|O Chain O, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|P Chain P, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|Q Chain Q, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|R Chain R, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp
Length = 380
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
V V+P L GKL G+A R+P K + + ++ASQ MKGI Y
Sbjct: 219 VALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKY 278
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAFEK 93
+ +VS+DF G + SSI D+ + + + K+++WYD++ + +
Sbjct: 279 SDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQ 324
>pdb|2EP7|A Chain A, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
pdb|2EP7|B Chain B, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
Length = 342
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 22/112 (19%)
Query: 1 VGKVLPSLNGKLTGMAFRLPPKKATYDDI-------------------KAAHKEASQGE- 40
+G+V+P L GKL G A R+P + D+ +AA K G+
Sbjct: 216 IGEVIPELKGKLDGTARRVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKV 275
Query: 41 -MKGIFGYIEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
+K I Y ED +VSTD VG+ S+IFDA + DN + +WYD++ +
Sbjct: 276 YLKEILQYCEDPIVSTDIVGNPHSAIFDAPL-TQVIDNLVHIAAWYDNEWGY 326
>pdb|3L0D|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
pdb|3L0D|B Chain B, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
Length = 356
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
VG VLP L G L G++ R+P + T ++I A + A+QG +KGI Y
Sbjct: 238 VGLVLPELKGLLDGVSIRVPTPNVSVVDLTFTAKRSTTIEEINTAIRTAAQGSLKGILDY 297
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
++ +VS DF + S+IF + +++ WYD++ F
Sbjct: 298 TDEKLVSCDFNHNPHSAIFHNDQTKVIDGQLCRVLVWYDNEWGF 341
>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|Q Chain Q, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|T Chain T, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 368
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 14/107 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLPPKKA--------------TYDDIKAAHKEASQGEMKGIFG 46
V VLP L GKL G+A R+P T +D+ A ++A+ G +KG+
Sbjct: 219 VSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNIEKVGVTAEDVNNAFRKAAAGPLKGVLD 278
Query: 47 YIEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAFEK 93
+ +VS DF + SS D+ + + + K+V+WYD++ + +
Sbjct: 279 VCDIPLVSVDFRCSDFSSTIDSSLTMVMGGDMVKVVAWYDNEWGYSQ 325
>pdb|3KSD|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSZ|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
Length = 336
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 21/108 (19%)
Query: 1 VGKVLPSLNGKLTGMAFRLP--------------PKKATYDDIKAAHKEASQGEMKGIFG 46
+GKV+P ++GKL G A R+P + T + + A K AS FG
Sbjct: 217 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FG 272
Query: 47 YIEDDVVSTDFVGDNRSSIFDAKAG--ISLSD-NFEKLVSWYDSDAAF 91
Y ED++VS+D VG S+FDA +S+ D K+ +WYD++ ++
Sbjct: 273 YTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSY 320
>pdb|3LC1|P Chain P, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|R Chain R, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|O Chain O, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|Q Chain Q, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution
Length = 336
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 21/108 (19%)
Query: 1 VGKVLPSLNGKLTGMAFRLP--------------PKKATYDDIKAAHKEASQGEMKGIFG 46
+GKV+P ++GKL G A R+P + T + + A K AS FG
Sbjct: 217 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FG 272
Query: 47 YIEDDVVSTDFVGDNRSSIFDAKAG--ISLSD-NFEKLVSWYDSDAAF 91
Y ED++VS+D VG S+FDA +S+ D K+ +WYD++ ++
Sbjct: 273 YTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSY 320
>pdb|3HQ4|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3KV3|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
Length = 336
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 21/108 (19%)
Query: 1 VGKVLPSLNGKLTGMAFRLP--------------PKKATYDDIKAAHKEASQGEMKGIFG 46
+GKV+P ++GKL G A R+P + T + + A K AS FG
Sbjct: 217 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FG 272
Query: 47 YIEDDVVSTDFVGDNRSSIFDAKAG--ISLSD-NFEKLVSWYDSDAAF 91
Y ED++VS+D VG S+FDA +S+ D K+ +WYD++ ++
Sbjct: 273 YTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSY 320
>pdb|3VAZ|P Chain P, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|R Chain R, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|O Chain O, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|Q Chain Q, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|B Chain B, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|A Chain A, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
Length = 344
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 21/108 (19%)
Query: 1 VGKVLPSLNGKLTGMAFRLP--------------PKKATYDDIKAAHKEASQGEMKGIFG 46
+GKV+P ++GKL G A R+P + T + + A K AS FG
Sbjct: 225 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FG 280
Query: 47 YIEDDVVSTDFVGDNRSSIFDAKAG--ISLSD-NFEKLVSWYDSDAAF 91
Y ED++VS+D VG S+FDA +S+ D K+ +WYD++ ++
Sbjct: 281 YTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSY 328
>pdb|3LVF|P Chain P, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|R Chain R, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|O Chain O, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|Q Chain Q, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
Length = 338
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 21/108 (19%)
Query: 1 VGKVLPSLNGKLTGMAFRLP--------------PKKATYDDIKAAHKEASQGEMKGIFG 46
+GKV+P ++GKL G A R+P + T + + A K AS FG
Sbjct: 219 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FG 274
Query: 47 YIEDDVVSTDFVGDNRSSIFDAKAG--ISLSD-NFEKLVSWYDSDAAF 91
Y ED++VS+D VG S+FDA +S+ D K+ +WYD++ ++
Sbjct: 275 YTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSY 322
>pdb|3K73|Q Chain Q, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|O Chain O, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|P Chain P, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|R Chain R, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3L6O|Q Chain Q, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|P Chain P, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|R Chain R, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|O Chain O, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3LC2|O Chain O, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|Q Chain Q, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|R Chain R, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|P Chain P, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
Length = 336
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 21/108 (19%)
Query: 1 VGKVLPSLNGKLTGMAFRLP--------------PKKATYDDIKAAHKEASQGEMKGIFG 46
+GKV+P ++GKL G A R+P + T + + A K AS FG
Sbjct: 217 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FG 272
Query: 47 YIEDDVVSTDFVGDNRSSIFDAKAG--ISLSD-NFEKLVSWYDSDAAF 91
Y ED++VS+D VG S+FDA +S+ D K+ +WYD++ ++
Sbjct: 273 YTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSY 320
>pdb|3K9Q|Q Chain Q, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|O Chain O, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|P Chain P, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|R Chain R, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3L4S|Q Chain Q, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|P Chain P, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|O Chain O, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|R Chain R, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
Length = 336
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 21/108 (19%)
Query: 1 VGKVLPSLNGKLTGMAFRLP--------------PKKATYDDIKAAHKEASQGEMKGIFG 46
+GKV+P ++GKL G A R+P + T + + A K AS FG
Sbjct: 217 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FG 272
Query: 47 YIEDDVVSTDFVGDNRSSIFDAKAG--ISLSD-NFEKLVSWYDSDAAF 91
Y ED++VS+D VG S+FDA +S+ D K+ +WYD++ ++
Sbjct: 273 YTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSY 320
>pdb|3LC7|O Chain O, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|R Chain R, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|Q Chain Q, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|P Chain P, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
Length = 339
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 21/108 (19%)
Query: 1 VGKVLPSLNGKLTGMAFRLP--------------PKKATYDDIKAAHKEASQGEMKGIFG 46
+GKV+P ++GKL G A R+P + T + + A K AS FG
Sbjct: 220 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FG 275
Query: 47 YIEDDVVSTDFVGDNRSSIFDAKAG--ISLSD-NFEKLVSWYDSDAAF 91
Y ED++VS+D VG S+FDA +S+ D K+ +WYD++ ++
Sbjct: 276 YTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSY 323
>pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|P Chain P, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|Q Chain Q, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|R Chain R, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPPKKATYDDIKAAHKE-------------ASQGEMKGIFGY 47
+ + P N + +A R+P T D+ K+ A+QG GI Y
Sbjct: 219 ITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDY 278
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
E +VS DF D S+I D + K + W D++ F
Sbjct: 279 TELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGF 322
>pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|B Chain B, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|C Chain C, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|D Chain D, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|E Chain E, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|F Chain F, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|G Chain G, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|H Chain H, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|I Chain I, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|J Chain J, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|K Chain K, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|L Chain L, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|M Chain M, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|N Chain N, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|O Chain O, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|P Chain P, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
Length = 338
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPPKKATYDDIKAAHKE-------------ASQGEMKGIFGY 47
+ + P N + +A R+P T D+ K+ A+QG GI Y
Sbjct: 218 ITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDY 277
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
E +VS DF D S+I D + K + W D++ F
Sbjct: 278 TELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGF 321
>pdb|2X5K|O Chain O, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|P Chain P, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|Q Chain Q, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|R Chain R, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 1 VGKVLPSLNGKLTGMAFRLPPKKATYDDIKAAHKE-------------ASQGEMKGIFGY 47
+ + P N + +A R+P T D+ K+ A+QG GI Y
Sbjct: 219 ITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDY 278
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDSDAAF 91
E +VS DF D S+I D + K + W D++ F
Sbjct: 279 TELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGF 322
>pdb|3OMB|A Chain A, Crystal Structure Of Extracellular Solute-Binding Protein
From Bifidobacterium Longum Subsp. Infantis
Length = 535
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 29 IKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKL 81
IK HK S+G + + +DD + D + D +++ G S SDNF KL
Sbjct: 268 IKYYHKLISEGLIPAEWATKDDDAYNADQISDGKTAKTGVVFGWSPSDNFGKL 320
>pdb|3FM3|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FM3|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FMQ|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMQ|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMR|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
pdb|3FMR|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
Length = 358
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 31 AAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLV 82
AAH + GE + EDDV+ DF + I D+ ++ +N E L+
Sbjct: 107 AAHYTVNPGEQDIVLK--EDDVLKIDFGTHSDGRIMDSAFTVAFKENLEPLL 156
>pdb|2PQY|A Chain A, E. Coli Rnase 1 (in Vitro Refolded With Dsba Only)
pdb|2PQX|A Chain A, E. Coli Rnase 1 (In Vivo Folded)
pdb|2EA1|A Chain A, Crystal Structure Of Ribonuclease I From Escherichia Coli
Complexed With Guanylyl-2(Prime),5(Prime)-Guanosine
pdb|2Z70|A Chain A, E.Coli Rnase 1 In Complex With D(Cgcgatcgcg)
Length = 245
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 65 IFDAKAGISLSDNFEKLVSWYDSDAAFEK 93
I +++AG L+DN+ K VS D DAAF K
Sbjct: 155 IKESEAGKFLADNYGKTVSRRDFDAAFAK 183
>pdb|2D36|A Chain A, The Crystal Structure Of Flavin Reductase Hpac
pdb|2D37|A Chain A, The Crystal Structure Of Flavin Reductase Hpac Complexed
With Nad+
pdb|2D38|A Chain A, The Crystal Structure Of Flavin Reductase Hpac Complexed
With Nadp+
Length = 176
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 17 FRLPPKKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFDAKAGISLSD 76
F L P K + +IK + + YIE + T VGD+ + + G + D
Sbjct: 99 FALKPVKERFREIKYKEGIGGCPILYDSYAYIEAKLYDTIDVGDHSIIVGEVIDGYQIRD 158
Query: 77 NFEKLV 82
NF LV
Sbjct: 159 NFTPLV 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,790,795
Number of Sequences: 62578
Number of extensions: 96792
Number of successful extensions: 301
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 73
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)