Query 047709
Match_columns 93
No_of_seqs 132 out of 1057
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 00:43:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h9e_O Glyceraldehyde-3-phosph 100.0 6.4E-45 2.2E-49 281.1 6.4 93 1-93 221-326 (346)
2 3pym_A GAPDH 3, glyceraldehyde 100.0 6.1E-45 2.1E-49 280.0 5.7 93 1-93 215-320 (332)
3 3v1y_O PP38, glyceraldehyde-3- 100.0 9.3E-45 3.2E-49 279.4 6.3 93 1-93 219-324 (337)
4 4dib_A GAPDH, glyceraldehyde 3 100.0 7.9E-45 2.7E-49 280.5 5.4 92 2-93 219-323 (345)
5 3doc_A Glyceraldehyde 3-phosph 100.0 1.1E-44 3.6E-49 278.9 5.8 93 1-93 217-322 (335)
6 1obf_O Glyceraldehyde 3-phosph 100.0 2.9E-44 1E-48 276.3 5.5 92 1-93 218-322 (335)
7 2b4r_O Glyceraldehyde-3-phosph 100.0 2.5E-44 8.6E-49 277.6 4.8 93 1-93 228-333 (345)
8 3ids_C GAPDH, glyceraldehyde-3 100.0 2.1E-44 7.2E-49 279.3 2.8 93 1-93 232-341 (359)
9 3hja_A GAPDH, glyceraldehyde-3 100.0 7.7E-44 2.6E-48 275.9 5.5 93 1-93 238-345 (356)
10 2ep7_A GAPDH, glyceraldehyde-3 100.0 2.2E-43 7.4E-48 272.1 5.9 92 1-93 216-328 (342)
11 1rm4_O Glyceraldehyde 3-phosph 100.0 4.1E-43 1.4E-47 269.7 5.8 92 2-93 218-322 (337)
12 2g82_O GAPDH, glyceraldehyde-3 100.0 1E-42 3.5E-47 266.8 6.1 92 1-93 213-317 (331)
13 2d2i_A Glyceraldehyde 3-phosph 100.0 1E-42 3.6E-47 271.2 5.7 92 2-93 220-324 (380)
14 1hdg_O Holo-D-glyceraldehyde-3 100.0 2.8E-42 9.6E-47 264.2 6.6 93 1-93 215-320 (332)
15 3cmc_O GAPDH, glyceraldehyde-3 100.0 2E-42 7E-47 265.1 5.7 93 1-93 215-320 (334)
16 3e5r_O PP38, glyceraldehyde-3- 100.0 3E-42 1E-46 264.2 6.4 93 1-93 219-324 (337)
17 3cps_A Glyceraldehyde 3-phosph 100.0 2.3E-42 7.8E-47 267.0 5.7 93 1-93 235-340 (354)
18 3b1j_A Glyceraldehyde 3-phosph 100.0 3E-42 1E-46 264.6 5.7 92 2-93 220-324 (339)
19 1gad_O D-glyceraldehyde-3-phos 100.0 4.2E-42 1.4E-46 262.9 6.3 93 1-93 214-319 (330)
20 1u8f_O GAPDH, glyceraldehyde-3 100.0 1.6E-41 5.6E-46 259.4 6.4 93 1-93 217-322 (335)
21 2x5j_O E4PDH, D-erythrose-4-ph 100.0 1.2E-41 4E-46 261.2 3.4 93 1-93 219-324 (339)
22 3lvf_P GAPDH 1, glyceraldehyde 100.0 4E-41 1.4E-45 259.3 5.3 89 1-93 219-324 (338)
23 2yyy_A Glyceraldehyde-3-phosph 98.7 2.9E-09 9.9E-14 81.4 2.3 38 2-39 203-253 (343)
24 2hjs_A USG-1 protein homolog; 98.5 9.6E-08 3.3E-12 72.5 5.0 87 2-92 223-323 (340)
25 2r00_A Aspartate-semialdehyde 98.1 2.5E-06 8.6E-11 64.6 4.3 83 2-88 221-316 (336)
26 1b7g_O Protein (glyceraldehyde 98.1 1.1E-06 3.9E-11 66.6 2.4 35 2-38 198-245 (340)
27 1cf2_P Protein (glyceraldehyde 97.8 2.8E-06 9.5E-11 64.4 0.1 34 2-38 199-245 (337)
28 1xyg_A Putative N-acetyl-gamma 97.8 9.7E-06 3.3E-10 61.9 3.0 85 3-91 223-332 (359)
29 2czc_A Glyceraldehyde-3-phosph 97.7 1.7E-05 6E-10 59.6 2.5 38 1-41 196-246 (334)
30 2yv3_A Aspartate-semialdehyde 97.5 2.6E-05 8.8E-10 59.0 1.0 81 2-91 215-316 (331)
31 2ozp_A N-acetyl-gamma-glutamyl 97.3 9.3E-05 3.2E-09 56.1 2.0 37 3-39 209-264 (345)
32 2ep5_A 350AA long hypothetical 97.2 8.8E-05 3E-09 56.2 1.5 37 2-38 213-270 (350)
33 3dr3_A N-acetyl-gamma-glutamyl 97.0 0.00047 1.6E-08 52.5 3.7 78 3-87 216-311 (337)
34 1t4b_A Aspartate-semialdehyde 97.0 0.00028 9.7E-09 54.1 2.1 36 2-37 250-299 (367)
35 4dpk_A Malonyl-COA/succinyl-CO 96.6 0.00042 1.4E-08 53.0 0.8 38 2-39 215-275 (359)
36 4dpl_A Malonyl-COA/succinyl-CO 96.6 0.00042 1.4E-08 53.0 0.6 38 2-39 215-275 (359)
37 1ys4_A Aspartate-semialdehyde 96.2 0.001 3.5E-08 50.3 0.6 36 3-38 220-276 (354)
38 3hsk_A Aspartate-semialdehyde 93.2 0.019 6.5E-07 44.3 0.4 37 3-39 237-301 (381)
39 2nqt_A N-acetyl-gamma-glutamyl 90.1 0.12 4.1E-06 39.2 1.9 29 9-38 234-274 (352)
40 2rbg_A Putative uncharacterize 74.2 1.5 5.3E-05 29.1 1.8 26 26-51 72-97 (126)
41 1i2t_A HYD protein; four alpha 73.7 0.17 5.8E-06 29.8 -2.6 17 4-20 16-32 (61)
42 3pwk_A Aspartate-semialdehyde 71.5 1.7 5.9E-05 33.1 1.8 26 11-36 238-276 (366)
43 1oey_A P67-PHOX, neutrophil cy 68.3 8.9 0.0003 23.6 4.3 35 15-50 16-51 (83)
44 3uw3_A Aspartate-semialdehyde 66.4 2.2 7.4E-05 32.7 1.4 27 10-36 267-306 (377)
45 1g9l_A Polyadenylate-binding p 58.4 1.9 6.5E-05 29.3 -0.2 18 4-21 81-98 (144)
46 1nmr_A Poly(A)-binding protein 58.1 0.33 1.1E-05 30.4 -3.7 34 4-37 38-76 (85)
47 1ifw_A Polyadenylate-binding p 58.0 0.34 1.2E-05 30.8 -3.7 18 4-21 37-54 (92)
48 3pzr_A Aspartate-semialdehyde 55.3 5.2 0.00018 30.5 1.8 26 11-36 260-298 (370)
49 3kuj_A Polyadenylate-binding p 51.5 1.1 3.6E-05 28.2 -2.2 18 4-21 35-52 (88)
50 1vd2_A Protein kinase C, IOTA 51.1 35 0.0012 21.0 4.9 28 8-38 13-40 (89)
51 2dyd_A Poly(A)-binding protein 50.2 0.43 1.5E-05 29.9 -4.2 19 3-21 36-54 (85)
52 1o9a_B FNBB, fibronectin bindi 50.1 2.3 7.9E-05 22.1 -0.6 21 70-90 13-33 (36)
53 2ftc_I Mitochondrial ribosomal 49.7 22 0.00074 23.0 3.9 30 9-38 74-111 (118)
54 3tz6_A Aspartate-semialdehyde 45.6 8.4 0.00029 29.0 1.6 26 11-36 241-279 (344)
55 3r8s_M 50S ribosomal protein L 45.5 21 0.00072 23.7 3.4 30 9-38 86-122 (136)
56 1vkn_A N-acetyl-gamma-glutamyl 41.0 25 0.00087 26.5 3.6 28 10-38 234-273 (351)
57 2i1a_A DNA damage-inducible pr 38.9 14 0.00047 23.6 1.6 45 28-73 5-49 (148)
58 2v1y_A Phosphatidylinositol-4, 37.1 48 0.0016 21.2 4.0 39 16-55 33-72 (108)
59 1oao_C CODH, carbon monoxide d 36.5 13 0.00043 31.2 1.4 34 23-56 561-596 (729)
60 2ich_A Putative ATTH; structur 36.0 9.6 0.00033 28.7 0.6 24 69-92 173-198 (335)
61 2hu9_A MERP, mercuric transpor 29.2 17 0.00059 24.0 0.9 29 11-39 53-95 (130)
62 3bbo_O Ribosomal protein L16; 27.5 23 0.00077 23.5 1.2 30 9-38 87-123 (135)
63 1ip9_A BEM1 protein; ubiquitin 27.4 71 0.0024 19.7 3.4 20 15-35 24-43 (85)
64 4ddp_A Beclin-1; ECD, autophag 25.5 41 0.0014 23.9 2.4 20 18-37 52-71 (210)
65 3tia_A Neuraminidase; 6-bladed 25.3 31 0.0011 27.5 1.8 29 45-76 114-142 (469)
66 1w26_A Trigger factor, TF; cha 25.2 33 0.0011 26.2 2.0 64 4-67 111-178 (432)
67 3c0f_B Uncharacterized protein 24.9 28 0.00094 21.8 1.2 13 79-91 34-46 (91)
68 4a94_C Carboxypeptidase inhibi 23.7 23 0.00079 19.6 0.6 8 85-92 30-37 (53)
69 3vp7_A Vacuolar protein sortin 21.9 53 0.0018 23.5 2.4 20 18-37 26-45 (220)
No 1
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*
Probab=100.00 E-value=6.4e-45 Score=281.13 Aligned_cols=93 Identities=61% Similarity=1.025 Sum_probs=90.5
Q ss_pred CceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEe
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFD 67 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d 67 (93)
++||||||+|||+||+||||| |++++||||++||+|++|+|||||+|||+|+||+||+|+|||+|||
T Consensus 221 vgkViPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~~VS~Df~~~~~ssi~d 300 (346)
T 3h9e_O 221 VTKVIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFD 300 (346)
T ss_dssp HHHHSGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEE
T ss_pred hheechhhcCcEEEEEEEcccccceeEEEEEEECCcCCHHHHHHHHHHhccCccCCceeEEcCCeEeeccCCCCCceeEc
Confidence 368999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCeEEEEEEcCCCCccCC
Q 047709 68 AKAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 68 ~~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
+.+|++++++++|+++|||||||||+
T Consensus 301 ~~~~~~~~~~~vk~~~WYDNE~gys~ 326 (346)
T 3h9e_O 301 AKAGIALNDNFVKLISWYDNEYGYSH 326 (346)
T ss_dssp TTTCEEEETTEEEEEEEECTTHHHHH
T ss_pred ccccEEecCCEEEEEEEECCCcchHH
Confidence 99999999999999999999999984
No 2
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*
Probab=100.00 E-value=6.1e-45 Score=279.99 Aligned_cols=93 Identities=62% Similarity=1.067 Sum_probs=90.5
Q ss_pred CceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEe
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFD 67 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d 67 (93)
++||||||+|||+|||||||| |++++||||++||+|++|+|||||+|||+|+||+||+|++||+|||
T Consensus 215 v~kVlPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~a~~g~lkgil~yte~~~VS~Df~~~~~ssi~d 294 (332)
T 3pym_A 215 VGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFD 294 (332)
T ss_dssp HHHHSGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEE
T ss_pred HHHhhhhhcCCEEEEEEEcCCCCcEeeEEEEEECCcCCHHHHHHHHHHhccCccCceeEEEcCCeEeeccCCCCcceEEc
Confidence 368999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCeEEEEEEcCCCCccCC
Q 047709 68 AKAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 68 ~~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
+.+|++++++++|+++|||||||||+
T Consensus 295 ~~~~~~~~~~~vk~~~WYDNE~gys~ 320 (332)
T 3pym_A 295 ASAGIQLSPKFVKLVSWYDNEYGYST 320 (332)
T ss_dssp GGGCEEEETTEEEEEEEECTTHHHHH
T ss_pred cccccccCCCEEEEEEEECCccchHH
Confidence 99999999999999999999999984
No 3
>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O
Probab=100.00 E-value=9.3e-45 Score=279.43 Aligned_cols=93 Identities=69% Similarity=1.153 Sum_probs=90.5
Q ss_pred CceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEe
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFD 67 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d 67 (93)
++||||+|+|||+|||||||| |++++||||++||+|++|+|||||+|||+|+||+||+|++||+|||
T Consensus 219 v~kVlPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~a~~g~lkgil~yte~~~VS~Df~~~~~ssi~d 298 (337)
T 3v1y_O 219 VGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFD 298 (337)
T ss_dssp HHHHSGGGTTSEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTBTTEEEECSCCCGGGGTTCCCSEEEE
T ss_pred HHHhccccCCcEEEEEEEcCCCCcEEEEEEEEECCCCcHHHHHHHHHHhccCccCCeeEEEcCCEEeeccCCCCcceEEe
Confidence 368999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCeEEEEEEcCCCCccCC
Q 047709 68 AKAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 68 ~~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
+.+|++++++++|+++|||||||||+
T Consensus 299 ~~~~~~~~~~~vk~~~WYDNE~gys~ 324 (337)
T 3v1y_O 299 AKAGIALNDNFVKLVAWYDNEWGYSN 324 (337)
T ss_dssp TTTCEEEETTEEEEEEEECTTHHHHH
T ss_pred cccCeEECCCEEEEEEEECCccchHH
Confidence 99999999999999999999999984
No 4
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}
Probab=100.00 E-value=7.9e-45 Score=280.49 Aligned_cols=92 Identities=38% Similarity=0.714 Sum_probs=90.1
Q ss_pred ceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEeC
Q 047709 2 GKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFDA 68 (93)
Q Consensus 2 ~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d~ 68 (93)
+||||+|+|||+|||||||| |++++||||++||+|++|+|||||+|||+|+||+||+|+|||+|||+
T Consensus 219 ~kVlPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~As~g~lkgil~yte~~~VS~Df~~~~~ssi~d~ 298 (345)
T 4dib_A 219 AKVLPHLNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVSIDFNTNTHSAIIDG 298 (345)
T ss_dssp HHHCGGGTTTEEEEEEECCCSSEEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCCSEEEEG
T ss_pred hhhccccCCcEEEEEEEccCcccEEEEEEEEECCCCCHHHHHHHHHHhhcCcccceeeeEcCcEeeeecCCCCcchhhhh
Confidence 68999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCceeecCCeEEEEEEcCCCCccCC
Q 047709 69 KAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 69 ~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
.+|++++++++|+++|||||||||+
T Consensus 299 ~~t~~~~~~~vk~~~WYDNE~Gys~ 323 (345)
T 4dib_A 299 LSTMVMGDRKVKVLAWYDNEWGYSR 323 (345)
T ss_dssp GGCEEETTTEEEEEEEEETTHHHHH
T ss_pred hccEEECCCEEEEEEEECCCcchHH
Confidence 9999999999999999999999984
No 5
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*
Probab=100.00 E-value=1.1e-44 Score=278.94 Aligned_cols=93 Identities=39% Similarity=0.785 Sum_probs=90.4
Q ss_pred CceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEe
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFD 67 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d 67 (93)
++||||||+|||+|+|||||| |++++||||++||+|++|+|||||+|||+|+||+||+|+|||+|||
T Consensus 217 v~kVlPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~~VS~Df~~~~~ssi~d 296 (335)
T 3doc_A 217 VGLVLPELKGKLDGVAIRVPTPNVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFNHDSHSSVFH 296 (335)
T ss_dssp HHHHSGGGTTCEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCCSEEEE
T ss_pred HHHhccccCCCEEEEEEEeccccccceEEEEEECCCCCHHHHHHHHHHhhcCCcCCeeEEEcCCeEeeeeCCCCCccccC
Confidence 368999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCeEEEEEEcCCCCccCC
Q 047709 68 AKAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 68 ~~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
+.+|++++++++|+++|||||||||+
T Consensus 297 ~~~t~~~~~~~vk~~~WYDNE~gys~ 322 (335)
T 3doc_A 297 TDQTKVMDGTMVRILSWYDNEWGFSS 322 (335)
T ss_dssp GGGCEEETTTEEEEEEEECTTHHHHH
T ss_pred chhhEEEcCCEEEEEEEEcCccchHH
Confidence 99999999999999999999999984
No 6
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*
Probab=100.00 E-value=2.9e-44 Score=276.32 Aligned_cols=92 Identities=41% Similarity=0.706 Sum_probs=89.4
Q ss_pred CceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEe
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFD 67 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d 67 (93)
++||||+|+|||+||++|||| |++++||||++|++|++|+|||||+|||+|+||+||+|++||+|||
T Consensus 218 v~kVlP~L~gkltg~avRVPv~~~s~~dl~v~lek~~t~eei~~~lk~a~~~~lkgil~y~~~~~vS~d~~~~~~ssi~d 297 (335)
T 1obf_O 218 VGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTVD 297 (335)
T ss_dssp HHHHCGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEE
T ss_pred HhhhccccCCceEEEEEEeeccceEEEEEEEEECCCCCHHHHHHHHHHhhhcccCCeecccCCceEeeeeCCCCccceec
Confidence 368999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCeEEEEEEcCCCCccCC
Q 047709 68 AKAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 68 ~~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
+.+|++ +++++|+++|||||||||+
T Consensus 298 ~~~~~~-~~~~vk~~~WyDNE~gys~ 322 (335)
T 1obf_O 298 ASLTKV-SGRLVKVSSWYDNEWGFSN 322 (335)
T ss_dssp GGGCEE-ETTEEEEEEEECTTHHHHH
T ss_pred cccccc-cCCEEEEEEEeCCCcchHh
Confidence 999999 9999999999999999984
No 7
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Probab=100.00 E-value=2.5e-44 Score=277.65 Aligned_cols=93 Identities=62% Similarity=1.047 Sum_probs=90.4
Q ss_pred CceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEe
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFD 67 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d 67 (93)
+++|||+|+|||+|+++|||| |++++||||++||+|++|+|||||+|||+|+||+||+|++||+|||
T Consensus 228 v~kVlP~L~gkltg~avRVPv~~gs~~dltv~lek~~t~eei~~~lk~a~~~~lkgil~y~~~~~VS~d~~~~~~ssi~d 307 (345)
T 2b4r_O 228 VGKVLPELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNRSSIFD 307 (345)
T ss_dssp HHHHSGGGTTTEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEE
T ss_pred HHHhhhhcCCcEEEEEEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhhcccCCcccccCCCceEEeeCCCCcccccc
Confidence 368999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCeEEEEEEcCCCCccCC
Q 047709 68 AKAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 68 ~~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
+.+|++++++++|+++|||||||||+
T Consensus 308 ~~~~~~~~~~~vk~~~WyDNE~gys~ 333 (345)
T 2b4r_O 308 MKAGLALNDNFFKLVSWYDNEWGYSN 333 (345)
T ss_dssp EEEEEEEETTEEEEEEEECTTHHHHH
T ss_pred cccCeEecCCEEEEEEEeCCCcchHh
Confidence 99999999999999999999999984
No 8
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Probab=100.00 E-value=2.1e-44 Score=279.29 Aligned_cols=93 Identities=49% Similarity=0.881 Sum_probs=90.1
Q ss_pred CceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEe
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFD 67 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d 67 (93)
++||||||+|||+|||||||| |++++||||++||+|++|+|||||+|||+|+||+||+|+|||+|||
T Consensus 232 v~kVlPeL~gkltg~avRVPv~~vs~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~~VS~Df~~~~~ssi~d 311 (359)
T 3ids_C 232 VGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYD 311 (359)
T ss_dssp HHHHSGGGTTSEEEEEEEESCSSCEEEEEEEECSSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCSSEEEE
T ss_pred HhhhchhhcCceEEEEEEcCCCCcEEEEEEEEECCCCCHHHHHHHHHHhccCccCCceeEecCCEEeeecCCCCcceeEe
Confidence 368999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCceeec----CCeEEEEEEcCCCCccCC
Q 047709 68 AKAGISLS----DNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 68 ~~~t~~~~----~~~vkl~~WyDNE~gys~ 93 (93)
+.+|++++ ++++|+++|||||||||+
T Consensus 312 ~~~t~~~~~~~~~~~vk~~~WYDNE~Gys~ 341 (359)
T 3ids_C 312 SKATLQNNLPKERRFFKIVSWYDNEWGYSH 341 (359)
T ss_dssp HHHHHHSSCTTCSSEEEEEEEECTTHHHHH
T ss_pred cccceeecccCCCCEEEEeEEECCCcchHH
Confidence 99999998 899999999999999984
No 9
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Probab=100.00 E-value=7.7e-44 Score=275.91 Aligned_cols=93 Identities=42% Similarity=0.787 Sum_probs=90.1
Q ss_pred CceeccCCCCCcceeEEEeCC--------------CCCCHHHHHHHHHHhhcCc-cccccceeccceEeecCCCCCcceE
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP--------------KKATYDDIKAAHKEASQGE-MKGIFGYIEDDVVSTDFVGDNRSSI 65 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt--------------k~~~~~~in~~~k~aa~~~-lkgil~~t~~~~VS~Df~g~~~s~i 65 (93)
++||||||+|||+|++||||| |++++||||++||+|++|+ |||||+|||+|+||+||+|++||+|
T Consensus 238 v~kVlPeL~gkltg~avRVPv~~~s~~dlt~~l~ek~~t~eeI~~~lk~Aa~g~~lkgil~yte~~~VS~Df~~~~~ssi 317 (356)
T 3hja_A 238 VGLVLPELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGNSHSSI 317 (356)
T ss_dssp HHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESCTTCCHHHHHHHHHHHHHSTTTTTTEEEECSCCCGGGGTTCCCSEE
T ss_pred HHHhccccCCcEEEEEEEcCCCccEeEEEEEEEccCCCCHHHHHHHHHHHhcCchhccccceecCCeEeeeccCCCCceE
Confidence 368999999999999999999 7899999999999999999 9999999999999999999999999
Q ss_pred EeCCCceeecCCeEEEEEEcCCCCccCC
Q 047709 66 FDAKAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 66 ~d~~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
||+.+|++++++++|+++|||||||||+
T Consensus 318 ~d~~~t~~~~~~~vk~~~WYDNE~Gys~ 345 (356)
T 3hja_A 318 VDGLETMVLENGFAKILSWYDNEFGYST 345 (356)
T ss_dssp EEGGGCEECSTTEEEEEEEECTTHHHHH
T ss_pred EcCcCCEEEcCCEEEEEEEECCccchHH
Confidence 9999999999999999999999999984
No 10
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}
Probab=100.00 E-value=2.2e-43 Score=272.14 Aligned_cols=92 Identities=39% Similarity=0.715 Sum_probs=89.3
Q ss_pred CceeccCCCCCcceeEEEeCC-------------C-CCCHHHHHHHHHHhhcC-------ccccccceeccceEeecCCC
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP-------------K-KATYDDIKAAHKEASQG-------EMKGIFGYIEDDVVSTDFVG 59 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt-------------k-~~~~~~in~~~k~aa~~-------~lkgil~~t~~~~VS~Df~g 59 (93)
+++|||+|+|||+|+|+|||| | ++++||||++||+|++| +|||||+|||+|+|||||+|
T Consensus 216 v~kVlP~L~gkltg~avRVPv~~~s~~dltv~lek~~~t~eei~~~lk~a~~~~~~~~~~~lkgil~y~~~~~vS~d~~~ 295 (342)
T 2ep7_A 216 IGEVIPELKGKLDGTARRVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVG 295 (342)
T ss_dssp GGGTSGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCSCHHHHHHHHHHHHHHHHTSCCGGGTTSEEEECSCCCGGGGTT
T ss_pred HHHhhhccCCCEEEEEEEecccceEEEEEEEEEcCCCCCHHHHHHHHHHHhcCCcccccccccccccccCCCeEeeeECC
Confidence 478999999999999999999 7 99999999999999999 99999999999999999999
Q ss_pred CCcceEEeCCCceeecCCeEEEEEEcCCCCccCC
Q 047709 60 DNRSSIFDAKAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 60 ~~~s~i~d~~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
+|||+|||+.+|+++ ++++|+++|||||||||+
T Consensus 296 ~~~ssi~d~~~~~~~-~~~vk~~~wyDNE~gys~ 328 (342)
T 2ep7_A 296 NPHSAIFDAPLTQVI-DNLVHIAAWYDNEWGYSC 328 (342)
T ss_dssp CCCSEEEEGGGCEEE-TTEEEEEEEECTTHHHHH
T ss_pred CCccceecccccccc-CCEEEEEEEECCCccchh
Confidence 999999999999999 899999999999999984
No 11
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*
Probab=100.00 E-value=4.1e-43 Score=269.69 Aligned_cols=92 Identities=35% Similarity=0.689 Sum_probs=89.8
Q ss_pred ceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEeC
Q 047709 2 GKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFDA 68 (93)
Q Consensus 2 ~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d~ 68 (93)
+++||||+|||+|+++|||| |++++||||+++++|++|+|||||+|||+|+||+||+|+|||+|||+
T Consensus 218 ~kvlPel~gkl~~~a~RVP~~~gs~~dl~~~l~k~~t~eei~~~lk~a~~~~lkgil~y~~~~~vs~d~~~~~~s~i~d~ 297 (337)
T 1rm4_O 218 ALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDS 297 (337)
T ss_dssp HHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCSSEEEEG
T ss_pred HhhhhhhcCcEEEEEEEecCCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCCcCceecCcCCCeeecccCCCCcccccch
Confidence 58999999999999999999 88999999999999999999999999999999999999999999999
Q ss_pred CCceeecCCeEEEEEEcCCCCccCC
Q 047709 69 KAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 69 ~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
.+|++++++++|+++|||||||||+
T Consensus 298 ~~~~~~~~~~~k~~~wydne~gys~ 322 (337)
T 1rm4_O 298 SLTMVMGDDMVKVIAWYDNEWGYSQ 322 (337)
T ss_dssp GGCEEETTTEEEEEEEECTTHHHHH
T ss_pred hccceecCCEEEEEEEECCCccchh
Confidence 9999999999999999999999984
No 12
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*
Probab=100.00 E-value=1e-42 Score=266.81 Aligned_cols=92 Identities=42% Similarity=0.747 Sum_probs=89.2
Q ss_pred CceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEe
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFD 67 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d 67 (93)
+++|||+|+|||+|+++|||| |++++||||+++|+|++|+|||||+|||+|+||+||+|+|||+|||
T Consensus 213 v~kIlp~L~gkl~g~a~RVPv~~gs~~dl~v~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d 292 (331)
T 2g82_O 213 TALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVD 292 (331)
T ss_dssp HTTTCGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEE
T ss_pred hhhhHHhcCCCEEEEEEEeCCCCEEEEEEEEEECCCCCHHHHHHHHHHhhcCccCCccCCCCCCeeeeeeCCCCccceec
Confidence 368999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCeEEEEEEcCCCCccCC
Q 047709 68 AKAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 68 ~~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
+.+|+++ ++++|+++|||||||||+
T Consensus 293 ~~~~~~~-~~~~k~~~wydne~gys~ 317 (331)
T 2g82_O 293 AKLTKAL-GNMVKVFAWYDNEWGYAN 317 (331)
T ss_dssp GGGCEEE-TTEEEEEEEECTTHHHHH
T ss_pred chhcccc-CCEEEEEEEECCCchhHH
Confidence 9999999 899999999999999984
No 13
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A
Probab=100.00 E-value=1e-42 Score=271.20 Aligned_cols=92 Identities=35% Similarity=0.678 Sum_probs=89.7
Q ss_pred ceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEeC
Q 047709 2 GKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFDA 68 (93)
Q Consensus 2 ~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d~ 68 (93)
++|||||+|||+|+++|||| |++++||||+++|+|++|+|||||+|||+|+||+||+|++||+|||+
T Consensus 220 ~kvlPeL~gkl~g~avRVPt~~gs~~dlt~~l~k~~t~eeI~~~lk~a~~~~lkgil~y~~~~~vS~d~~~~~~ssi~d~ 299 (380)
T 2d2i_A 220 ALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDS 299 (380)
T ss_dssp HHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEG
T ss_pred HhhhHhhhCcEEEEEEEeccCCEEEEEEEEEECCcCCHHHHHHHHHHHhhCCCCCccCCcCCCeeeeeeCCCCcceEEec
Confidence 67999999999999999999 88999999999999999999999999999999999999999999999
Q ss_pred CCceeecCCeEEEEEEcCCCCccCC
Q 047709 69 KAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 69 ~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
.+|++++++++|+++|||||||||+
T Consensus 300 ~~~~~~~~~~vk~~~wyDNe~gys~ 324 (380)
T 2d2i_A 300 SLTLVMDGDLVKVIAWYDNEWGYSQ 324 (380)
T ss_dssp GGCEEETTTEEEEEEEECTTHHHHH
T ss_pred ccCceecCCEEEEEEEECCCcchHh
Confidence 9999999999999999999999984
No 14
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1
Probab=100.00 E-value=2.8e-42 Score=264.19 Aligned_cols=93 Identities=40% Similarity=0.767 Sum_probs=90.1
Q ss_pred CceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEe
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFD 67 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d 67 (93)
++++||+|+|||+|+++|||| |++++|||++++++|++|+|||||+|||+|+||+||+|++||+|||
T Consensus 215 i~kvLp~l~gkl~~~a~rVP~~~g~l~~l~~~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d 294 (332)
T 1hdg_O 215 VALVVPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFD 294 (332)
T ss_dssp HHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCCSEEEE
T ss_pred hhhhCccccCCEEEEeEEccccCcEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCcccccCCCeeeeeeCCCCccceec
Confidence 368999999999999999999 8899999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCeEEEEEEcCCCCccCC
Q 047709 68 AKAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 68 ~~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
+.+|++++++++|+++|||||||||+
T Consensus 295 ~~~~~~~~~~~~k~~~wydne~gys~ 320 (332)
T 1hdg_O 295 ATITNVIGGKLVKVASWYDNEYGYSN 320 (332)
T ss_dssp TTTCEEETTTEEEEEEEECTTHHHHH
T ss_pred cccCeEecCCEEEEEEEeCCCccchh
Confidence 99999999999999999999999984
No 15
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Probab=100.00 E-value=2e-42 Score=265.14 Aligned_cols=93 Identities=43% Similarity=0.774 Sum_probs=90.1
Q ss_pred CceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEe
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFD 67 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d 67 (93)
++++||+|+|||+|+++|||| |++++|||++++++|++|+|||||+|+|+|+||+||+|+|||+|||
T Consensus 215 i~kvlp~l~gkl~~~a~rVP~~~gs~~~l~~~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d 294 (334)
T 3cmc_O 215 VALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTID 294 (334)
T ss_dssp HHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCSSEEEE
T ss_pred hhhhChhhcCcEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCccCCcccCCCCCEeeeeeCCCCccceec
Confidence 368999999999999999999 8899999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCeEEEEEEcCCCCccCC
Q 047709 68 AKAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 68 ~~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
+.+|++++++++|+++|||||||||+
T Consensus 295 ~~~~~~~~~~~~k~~~wydne~gys~ 320 (334)
T 3cmc_O 295 ALSTMVIDGKMVKVVSWYDNETGYSH 320 (334)
T ss_dssp GGGCEEETTTEEEEEEEECTTHHHHH
T ss_pred cccCeEecCCEEEEEEEeCCCchhhh
Confidence 99999999999999999999999984
No 16
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Probab=100.00 E-value=3e-42 Score=264.17 Aligned_cols=93 Identities=69% Similarity=1.153 Sum_probs=90.1
Q ss_pred CceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEe
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFD 67 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d 67 (93)
++++||||+|||+|+++|||| |++++|||++++++|++|+|||||+|+|+|+||+||+|+|||+|||
T Consensus 219 i~kvlpel~gkl~~~a~rVP~~~g~~~~l~~~l~k~~t~eei~~~~~~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d 298 (337)
T 3e5r_O 219 VGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFD 298 (337)
T ss_dssp HHHHSGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEE
T ss_pred HHHHHHHhCCcEEEEEEEeccCCeEEEEEEEEECCCccHHHHHHHHHHHhhCCCCCcccCCCCCeeeeeecCCCCceEEe
Confidence 368999999999999999999 8899999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCeEEEEEEcCCCCccCC
Q 047709 68 AKAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 68 ~~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
+.+|++++++++|+++|||||||||+
T Consensus 299 ~~~~~~~~~~~~k~~~wydne~gys~ 324 (337)
T 3e5r_O 299 AKAGIALNDNFVKLVAWYDNEWGYSN 324 (337)
T ss_dssp TTTCEEEETTEEEEEEEECTTHHHHH
T ss_pred cccCcEecCCEEEEEEEeCCCcchHh
Confidence 99999999999999999999999984
No 17
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*
Probab=100.00 E-value=2.3e-42 Score=267.03 Aligned_cols=93 Identities=60% Similarity=0.989 Sum_probs=90.1
Q ss_pred CceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEe
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFD 67 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d 67 (93)
++++||+|+|||+|+++|||| |++++|||++++++|++|+|||||+|||+|+||+||+|+|||+|||
T Consensus 235 i~kvlp~l~gkl~~~a~rVP~~~gs~~dl~~~l~k~~t~eeI~~~~k~a~~~~lkgil~y~~~~~vs~d~~~~~~s~~~d 314 (354)
T 3cps_A 235 VGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFD 314 (354)
T ss_dssp HHHHSGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEE
T ss_pred HHHHHHhcCCcEEEEEEEeccCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCCCCCccCccCCCeeeEEEcCCCcceEEe
Confidence 368999999999999999999 8899999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCeEEEEEEcCCCCccCC
Q 047709 68 AKAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 68 ~~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
+.+|++++++++|+++|||||||||+
T Consensus 315 ~~~~~~~~~~~~k~~~wydne~gys~ 340 (354)
T 3cps_A 315 KNACIALNDSFVKLISWYDNESGYSN 340 (354)
T ss_dssp GGGCEEEETTEEEEEEEECTTHHHHH
T ss_pred cccCeEecCCEEEEEEEECCCcchHh
Confidence 99999999999999999999999984
No 18
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Probab=100.00 E-value=3e-42 Score=264.62 Aligned_cols=92 Identities=35% Similarity=0.678 Sum_probs=89.6
Q ss_pred ceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEeC
Q 047709 2 GKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFDA 68 (93)
Q Consensus 2 ~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d~ 68 (93)
++|||||+|||+|+++|||| |++++|||++++++|++|+|||||+|||+|+||+||+|+|||+|||+
T Consensus 220 ~kVlpeL~gkl~g~a~rVP~~~g~~~dl~v~l~k~~t~eeI~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~ 299 (339)
T 3b1j_A 220 ALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDS 299 (339)
T ss_dssp HHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHSTTBTTEEEECSCCCGGGGTTCCSSEEEEG
T ss_pred HHHhHhhcCcEEEEEEEeccCCEEEEEEEEEEcCcCCHHHHHHHHHHhhcCCCCCccCccCCceeehhcCCCCCceEEec
Confidence 68999999999999999999 88999999999999999999999999999999999999999999999
Q ss_pred CCceeecCCeEEEEEEcCCCCccCC
Q 047709 69 KAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 69 ~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
.+|++++++++|+++|||||||||+
T Consensus 300 ~~~~~~~~~~~k~~~wydne~gys~ 324 (339)
T 3b1j_A 300 SLTLVMDGDLVKVIAWYDNEWGYSQ 324 (339)
T ss_dssp GGCEEETTTEEEEEEEECTTHHHHH
T ss_pred ccCceecCCEEEEEEEeCCCcchHh
Confidence 9999999999999999999999984
No 19
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Probab=100.00 E-value=4.2e-42 Score=262.91 Aligned_cols=93 Identities=69% Similarity=1.123 Sum_probs=90.0
Q ss_pred CceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEe
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFD 67 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d 67 (93)
++++||||+|||+|+++|||| |++++|||++++++|++|+|||||+|||+|+||+||+|++||+|||
T Consensus 214 i~kvlpel~gkl~~~a~rVP~~~g~~~~l~~~l~k~~t~eei~~~~k~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d 293 (330)
T 1gad_O 214 VGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFD 293 (330)
T ss_dssp HHHHSGGGTTSEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCSSEEEE
T ss_pred HHHHHHHhcCcEEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhcCCCCCEEeeECCceeeeeECCCCcceEEe
Confidence 368999999999999999999 8899999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCeEEEEEEcCCCCccCC
Q 047709 68 AKAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 68 ~~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
+.+|++++++++|+++|||||||||+
T Consensus 294 ~~~~~~~~~~~~k~~~wydne~gys~ 319 (330)
T 1gad_O 294 AKAGIALNDNFVKLVSWYDNETGYSN 319 (330)
T ss_dssp TTTCEEEETTEEEEEEEECTTHHHHH
T ss_pred cccCeEecCCEEEEEEEECCCchhhh
Confidence 99999999999999999999999984
No 20
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1
Probab=100.00 E-value=1.6e-41 Score=259.36 Aligned_cols=93 Identities=61% Similarity=1.030 Sum_probs=89.9
Q ss_pred CceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEe
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFD 67 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d 67 (93)
++++||||+|||+|+++|||| |++++|||++++++|++|+|||||+|+|+|+||+||+|++||+|||
T Consensus 217 i~kvlpel~gkl~~~a~rVP~~~g~~~~l~~~l~~~~t~eei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d 296 (335)
T 1u8f_O 217 VGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFD 296 (335)
T ss_dssp HHHHSGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEE
T ss_pred HHHHHHHhCCcEEEEEEEeccCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCccCcEEcccCCCcceeeecCCCCceEEe
Confidence 368999999999999999999 8899999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCeEEEEEEcCCCCccCC
Q 047709 68 AKAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 68 ~~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
+.+|++++++++|+++|||||||||+
T Consensus 297 ~~~~~~~~~~~~k~~~wydne~gy~~ 322 (335)
T 1u8f_O 297 AGAGIALNDHFVKLISWYDNEFGYSN 322 (335)
T ss_dssp TTTCEEEETTEEEEEEEECTTHHHHH
T ss_pred CCCCEEecCCEEEEEEEEcCcchhHh
Confidence 99999999999999999999999984
No 21
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*
Probab=100.00 E-value=1.2e-41 Score=261.24 Aligned_cols=93 Identities=27% Similarity=0.504 Sum_probs=90.0
Q ss_pred CceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEe
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFD 67 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d 67 (93)
++++||+|+|||+|+++|||| |++++|||++++++|++|+|||||+|+|+|+||+||+|+|||+|||
T Consensus 219 i~kvlp~l~gkl~~~a~rVP~~~g~~~~l~v~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d 298 (339)
T 2x5j_O 219 ITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVD 298 (339)
T ss_dssp HHHHSGGGTTSEEEEEEECSSCSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCSSEEEE
T ss_pred HHHHHHHhcCcEEEEEEEecccCcEEEEEEEEECCCCCHHHHHHHHHHHhhcCCCcEEcccCCcccccccCCCCCceEEE
Confidence 368999999999999999999 8899999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCeEEEEEEcCCCCccCC
Q 047709 68 AKAGISLSDNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 68 ~~~t~~~~~~~vkl~~WyDNE~gys~ 93 (93)
+.+|++++++++|+++|||||||||+
T Consensus 299 ~~~~~~~~~~~~k~~~wydne~gys~ 324 (339)
T 2x5j_O 299 GTQTRVSGAHLIKTLVWCDNEWGFAN 324 (339)
T ss_dssp EEEEEEETTTEEEEEEEECHHHHHHH
T ss_pred cccceeccCCEEEEEEEeCCCcccHh
Confidence 99999999999999999999999984
No 22
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*
Probab=100.00 E-value=4e-41 Score=259.32 Aligned_cols=89 Identities=40% Similarity=0.741 Sum_probs=85.9
Q ss_pred CceeccCCCCCcceeEEEeCC-------------C-CCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEE
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP-------------K-KATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIF 66 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt-------------k-~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~ 66 (93)
++||||||+|||+|||||||| | ++++||||++||+|++|+ |+|||+|+||+||+|+|||+||
T Consensus 219 v~kVlPeL~gkltg~avRVPv~~~s~~dlt~~lek~~~t~eei~~~lk~As~g~----l~yte~~~VS~Df~~~~~ssi~ 294 (338)
T 3lvf_P 219 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLF 294 (338)
T ss_dssp GGGTCGGGTTSEEEEEEEESCSSCEEEEEEEEESSSSCCHHHHHHHHHHTCCSS----EEEECSCCCGGGGTTCCCSEEE
T ss_pred HhhhchhhcCcEEEEEEEcCCCceEEEEEEEEEccCCCCHHHHHHHHHHhhcCC----cccccCCEEeEeeCCCCcceEE
Confidence 478999999999999999999 7 999999999999999988 9999999999999999999999
Q ss_pred eCCCceeec---CCeEEEEEEcCCCCccCC
Q 047709 67 DAKAGISLS---DNFEKLVSWYDSDAAFEK 93 (93)
Q Consensus 67 d~~~t~~~~---~~~vkl~~WyDNE~gys~ 93 (93)
|+.+|++++ ++++|+++|||||||||+
T Consensus 295 d~~~t~~~~~~~~~~vk~~~WYDNE~gys~ 324 (338)
T 3lvf_P 295 DATQTRVMSVGDRQLVKVAAWYDNEMSYTA 324 (338)
T ss_dssp EGGGCEEEEETTEEEEEEEEEECTTHHHHH
T ss_pred ecccceEecCCCCCEEEEEEEECCccchHH
Confidence 999999998 899999999999999984
No 23
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}
Probab=98.74 E-value=2.9e-09 Score=81.39 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=35.7
Q ss_pred ceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcC
Q 047709 2 GKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQG 39 (93)
Q Consensus 2 ~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~ 39 (93)
+++||+|+||++|+++|||| +++++|||++++++|+..
T Consensus 203 ~kilp~l~gkl~~~avRVPv~~gh~~~l~v~l~~~~t~eei~~~l~~a~~v 253 (343)
T 2yyy_A 203 VSVVPEFEGKILTSAVIVPTTLMHMHTLMVEVDGDVSRDDILEAIKKTPRI 253 (343)
T ss_dssp HHHCGGGTTSEEEEEEEESCSSCEEEEEEEEEESCCCHHHHHHHHHHSTTE
T ss_pred HHhhhccccceeeEEEEecccceEEEEEEEEECCCCCHHHHHHHHHhCCCC
Confidence 58999999999999999999 899999999999999765
No 24
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1
Probab=98.51 E-value=9.6e-08 Score=72.50 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=57.4
Q ss_pred ceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEeC
Q 047709 2 GKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFDA 68 (93)
Q Consensus 2 ~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d~ 68 (93)
+++||++++|++++++|||+ +++++|||+++++++ ++--++...+-|-...+..|..+..|--.
T Consensus 223 ~kil~~~~~~v~~~~~rVP~~~g~~~~~~~~l~~~~t~eei~~~~~~~---~~V~v~~~~~~p~~~~~v~g~~~~~vgr~ 299 (340)
T 2hjs_A 223 QALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT---KGIEWVGEGDYPTVVGDALGQDETYVGRV 299 (340)
T ss_dssp HHHTGGGBCCEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHS---TTEEECCTTCCCCCCCCCTTSSCEEEEEE
T ss_pred HHHhCCCCCcEEEEeEEcCcCceEEEEEEEEECCCCCHHHHHHHHhcC---CCcEEeCCCCCCccHHHcCCCCEEEEEEE
Confidence 57899999999999999999 889999999999963 33333331112222115565554444222
Q ss_pred CCceeecCCeEEEEEEcCC-CCccC
Q 047709 69 KAGISLSDNFEKLVSWYDS-DAAFE 92 (93)
Q Consensus 69 ~~t~~~~~~~vkl~~WyDN-E~gys 92 (93)
+.... .++.+.+.++.|| .+|.|
T Consensus 300 r~~~~-~~~~l~~~~~~DNl~kGAA 323 (340)
T 2hjs_A 300 RAGQA-DPCQVNLWIVSDNVRKGAA 323 (340)
T ss_dssp EECSS-CTTEEEEEEEECCCCCCCH
T ss_pred EecCC-CCCEEEEEEEechHHHHHH
Confidence 22211 3567999999999 77753
No 25
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*
Probab=98.09 E-value=2.5e-06 Score=64.57 Aligned_cols=83 Identities=12% Similarity=0.059 Sum_probs=51.2
Q ss_pred ceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEeC
Q 047709 2 GKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFDA 68 (93)
Q Consensus 2 ~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d~ 68 (93)
+++||++++|++++++|||+ +++++|||+++++++ ++--++...+-|-...+..|..+..|--.
T Consensus 221 ~kil~~~~~~v~~t~~rVP~~~g~~~~~~~~l~~~~t~~ei~~~~~~~---~~v~v~~~~~~p~~~~~v~g~~~~~vgr~ 297 (336)
T 2r00_A 221 QKIFNDPSIMVNPTCVRVPVFYGHAEAVHVETRAPIDAEQVMDMLEQT---DGIELFRGADFPTQVRDAGGKDHVLVGRV 297 (336)
T ss_dssp HHHTTCTTCEEEEEEEEESSCBSEEEEEEEEESSCCCHHHHHHHHHHS---TTEEECCCCSSGGGCCCCCSSSCEEEEEE
T ss_pred HHHhCCCCCcEEEEeEEeccCcEEEEEEEEEeCCCCCHHHHHHHHHhC---CCeEEECCCCCCcCHHHhCCCceEEEEEE
Confidence 57899999999999999999 889999999999983 33223331112221114455443333211
Q ss_pred CCceeecCCeEEEEEEcCCC
Q 047709 69 KAGISLSDNFEKLVSWYDSD 88 (93)
Q Consensus 69 ~~t~~~~~~~vkl~~WyDNE 88 (93)
..... .++.+.+.+..||-
T Consensus 298 ~~d~~-~~~~l~~~~~~DNl 316 (336)
T 2r00_A 298 RNDIS-HHSGINLWVVADNV 316 (336)
T ss_dssp EEETT-EEEEEEEEEEESSH
T ss_pred EecCC-CCCEEEEEEEehhH
Confidence 11000 12467888889983
No 26
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1
Probab=98.09 E-value=1.1e-06 Score=66.65 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=31.9
Q ss_pred ceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhc
Q 047709 2 GKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQ 38 (93)
Q Consensus 2 ~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~ 38 (93)
+++||+|+ |+|+++|||| +++++|||+++++++++
T Consensus 198 ~~vlp~l~--l~~~a~rVPv~~gh~~~l~v~l~~~~t~eei~~~l~~a~~ 245 (340)
T 1b7g_O 198 NSVIRNLD--IATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPR 245 (340)
T ss_dssp HTTSTTCE--EEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTCTT
T ss_pred HHhCCCCc--EEEEEEEeccCCeEEEEEEEEECCCCCHHHHHHHHHcCCC
Confidence 57899996 9999999999 88999999999998765
No 27
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1
Probab=97.81 E-value=2.8e-06 Score=64.42 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=29.8
Q ss_pred ceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhc
Q 047709 2 GKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQ 38 (93)
Q Consensus 2 ~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~ 38 (93)
.++| +|+ ++++++|||+ +++++|||++++++++.
T Consensus 199 ~kil-~l~--v~~t~~rVPv~~g~~~~~~v~l~~~~t~eei~~~~~~~~~ 245 (337)
T 1cf2_P 199 KTVL-DIN--IDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPR 245 (337)
T ss_dssp HTTS-CCC--EEEEEEEESCCSCEEEEEEEEESSCCCHHHHHHHHHHSTT
T ss_pred Hhhh-eeE--EEEEEEEcCccCeEEEEEEEEECCCCCHHHHHHHHHhCCC
Confidence 4677 784 9999999999 88999999999999854
No 28
>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A
Probab=97.80 E-value=9.7e-06 Score=61.91 Aligned_cols=85 Identities=11% Similarity=0.081 Sum_probs=54.4
Q ss_pred eeccCCC---C-------CcceeEEEeCC-------------CCCCHHHHHHHHHHhhcC-ccccccceeccceEeecCC
Q 047709 3 KVLPSLN---G-------KLTGMAFRLPP-------------KKATYDDIKAAHKEASQG-EMKGIFGYIEDDVVSTDFV 58 (93)
Q Consensus 3 ~vlPeL~---G-------kl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~-~lkgil~~t~~~~VS~Df~ 58 (93)
+++||++ | |++++++|||+ ++++.|||+++++++.++ ++-.++...+-|-. .+..
T Consensus 223 ~h~pEi~~~l~~~~~~~~~v~~t~~rvP~~~G~~~~i~~~l~~~~t~eei~~~~~~~y~~~~~V~v~~~~~~p~~-~~v~ 301 (359)
T 1xyg_A 223 RHVPEIEQGLSDVAQSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVRTEDLHQQLKTSYEDEEFVKVLDEGVVPRT-HNVR 301 (359)
T ss_dssp THHHHHHHHHHHHHTSCCCCEEECEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCSSEEECCTTCCCBG-GGTT
T ss_pred ccHHHHHHHHHHhcCCCCCEEEEEEEecccceEEEEEEEEeCCCCCHHHHHHHHHHhhCCCCCEEEcCCCCCCCH-HHhc
Confidence 5677777 6 89999999999 779999999999998764 34333332112222 2455
Q ss_pred CCCcceEEeCCCceeecCCeEEEEEEcCCC-Ccc
Q 047709 59 GDNRSSIFDAKAGISLSDNFEKLVSWYDSD-AAF 91 (93)
Q Consensus 59 g~~~s~i~d~~~t~~~~~~~vkl~~WyDNE-~gy 91 (93)
|..+..|- ..... ..+.+.++++.||- .|.
T Consensus 302 g~n~~~ig-~~~d~--~~~~l~~~~~~DNl~kGA 332 (359)
T 1xyg_A 302 GSNYCHMS-VFPDR--IPGRAIIISVIDNLVKGA 332 (359)
T ss_dssp TSSCEEEE-EEECS--STTEEEEEEEECTTTTTT
T ss_pred CCCeEEEE-EEEeC--CCCEEEEEEEehhhhHhH
Confidence 55444442 11111 23678899999996 443
No 29
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=97.67 E-value=1.7e-05 Score=59.59 Aligned_cols=38 Identities=32% Similarity=0.519 Sum_probs=33.2
Q ss_pred CceeccCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCcc
Q 047709 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEM 41 (93)
Q Consensus 1 v~~vlPeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~l 41 (93)
++++|| |+ ++|+++|||+ +++++|||++++++|++..+
T Consensus 196 i~~~l~-l~--l~~~~~rVPv~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~l 246 (334)
T 2czc_A 196 VQTVIP-IN--IETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLL 246 (334)
T ss_dssp HTTTSC-CC--EEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTSTTEEE
T ss_pred hheEEE-EE--EEEEEEEcCCCceEEEEEEEEECCCCCHHHHHHHHHhccCCEe
Confidence 367889 87 9999999999 88999999999999987543
No 30
>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}
Probab=97.47 E-value=2.6e-05 Score=58.95 Aligned_cols=81 Identities=14% Similarity=0.172 Sum_probs=50.2
Q ss_pred ceec--cCCCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhhcCccccccceeccc-----eEeecCCCCC
Q 047709 2 GKVL--PSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGYIEDD-----VVSTDFVGDN 61 (93)
Q Consensus 2 ~~vl--PeL~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~~lkgil~~t~~~-----~VS~Df~g~~ 61 (93)
+++| |+|+ ++++++|||+ +++++|||++++++++. +.+.+++ .-..+..|..
T Consensus 215 ~kil~~~~l~--v~~~~~rVP~~~g~~~~~~~~l~~~~t~eei~~~~~~~~~------v~v~~~~~~~~~p~~~~~~g~~ 286 (331)
T 2yv3_A 215 HKIFGDDTIR--ISATAVRVPTLRAHAEAVSVEFARPVTPEAAREVLKEAPG------VEVVDEPEAKRYPMPLTASGKW 286 (331)
T ss_dssp HHHTTCTTCE--EEEECCBCSCSSEEEEEEEEEESSCCCHHHHHHHHTTSTT------CCBCCBTTTTBCCCHHHHTTCS
T ss_pred HHHhCCCCce--EEEEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHcCCC------eEEEeCCCcCCCCChhhccCCc
Confidence 4677 8885 9999999999 88999999999998542 1222211 1112445554
Q ss_pred cceEEeCCCceeecCCeEEEEEEcCCC-Ccc
Q 047709 62 RSSIFDAKAGISLSDNFEKLVSWYDSD-AAF 91 (93)
Q Consensus 62 ~s~i~d~~~t~~~~~~~vkl~~WyDNE-~gy 91 (93)
+..|--...... .++.+.++++.||- +|.
T Consensus 287 ~~~igr~~~d~~-~~~~l~~~~~~DNl~kGA 316 (331)
T 2yv3_A 287 DVEVGRIRKSLA-FENGLDFFVVGDQLLKGA 316 (331)
T ss_dssp SEEEEEEEECSS-STTEEEEEEEEETTHHHH
T ss_pred eEEEEEEEECCC-CCCEEEEEEEechHHHHH
Confidence 444421111110 24678999999996 443
No 31
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}
Probab=97.27 E-value=9.3e-05 Score=56.11 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=33.2
Q ss_pred eeccCCC-----C-CcceeEEEeCC-------------CCCCHHHHHHHHHHhhcC
Q 047709 3 KVLPSLN-----G-KLTGMAFRLPP-------------KKATYDDIKAAHKEASQG 39 (93)
Q Consensus 3 ~vlPeL~-----G-kl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~ 39 (93)
+++||++ + |++++++|||+ ++++.|||+++++++.++
T Consensus 209 ~~~pei~~~l~~~~~v~~~~~rvP~~~g~~~~i~~~l~~~~t~eei~~~~~~~y~~ 264 (345)
T 2ozp_A 209 RHTAEVVENLPGRPEVHLTAIATDRVRGILMTAQCFVQDGWSERDVWQAYREAYAG 264 (345)
T ss_dssp THHHHHHHTSSSCCCEEEEEEECSCSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTT
T ss_pred cChHhHHHHhCCCCCeEEEEEEeccccEEEEEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 6788887 7 99999999999 789999999999998764
No 32
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}
Probab=97.23 E-value=8.8e-05 Score=56.20 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=33.1
Q ss_pred ceeccCCCC--------CcceeEEEeCC-------------CCCCHHHHHHHHHHhhc
Q 047709 2 GKVLPSLNG--------KLTGMAFRLPP-------------KKATYDDIKAAHKEASQ 38 (93)
Q Consensus 2 ~~vlPeL~G--------kl~g~a~RVPt-------------k~~~~~~in~~~k~aa~ 38 (93)
.++||+|+| |++++++|||+ ++++.|||+++++++..
T Consensus 213 ~~~l~~~~g~~~~~~~~~v~~t~~rvP~~~g~~~~i~~~l~~~~t~eei~~~~~~~~~ 270 (350)
T 2ep5_A 213 TKLNGKLENNQIIPANLDSTVTSIRVPTRVGHMGVINIVTNERINIEEIKKTLKNFKS 270 (350)
T ss_dssp HHHTCEECSSSEECCCCEEEEEEEECSCSSCEEEEEEEECCSCCCHHHHHHHHHTCCC
T ss_pred HHHHhhccccccccccccEEEEeEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhc
Confidence 467899988 79999999999 78999999999998864
No 33
>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A
Probab=97.01 E-value=0.00047 Score=52.46 Aligned_cols=78 Identities=12% Similarity=0.050 Sum_probs=50.9
Q ss_pred eeccCCCC----CcceeEEEeCC-------------CCCCHHHHHHHHHHhh-cCccccccceeccceEeecCCCCCcce
Q 047709 3 KVLPSLNG----KLTGMAFRLPP-------------KKATYDDIKAAHKEAS-QGEMKGIFGYIEDDVVSTDFVGDNRSS 64 (93)
Q Consensus 3 ~vlPeL~G----kl~g~a~RVPt-------------k~~~~~~in~~~k~aa-~~~lkgil~~t~~~~VS~Df~g~~~s~ 64 (93)
+++||+.+ |++++++|||+ ++++.+||+++++++- ..++-.++.-.. |-. .+..|..+..
T Consensus 216 ~h~Pei~~~l~~~v~ft~~rvPv~rG~~~ti~~~l~~~~t~eev~~~l~~~Y~~~p~V~v~~~~~-P~~-~~v~gtn~~~ 293 (337)
T 3dr3_A 216 RHQPEIATHLGADVIFTPHLGNFPRGILETITCRLKSGVTQAQVAQALQQAYAHKPLVRLYDKGV-PAL-KNVVGLPFCD 293 (337)
T ss_dssp THHHHHHHHHTSCCEEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCTTEEECSSSC-CCG-GGTTTSSCEE
T ss_pred eechhHHhhhcCCEEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHHhCCCCCEEECCCCC-CCH-HHhCCCCcEE
Confidence 56888888 99999999999 7899999999999873 334433333211 322 2555544433
Q ss_pred EEeCCCceeecCCeEEEEEEcCC
Q 047709 65 IFDAKAGISLSDNFEKLVSWYDS 87 (93)
Q Consensus 65 i~d~~~t~~~~~~~vkl~~WyDN 87 (93)
|- ...+++.+.+++--||
T Consensus 294 ig-----~~~~~~~l~~~~~~DN 311 (337)
T 3dr3_A 294 IG-----FAVQGEHLIIVATEDN 311 (337)
T ss_dssp EE-----EEEETTEEEEEEEECT
T ss_pred EE-----EEEeCCEEEEEEEech
Confidence 31 1112456777777898
No 34
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*
Probab=96.97 E-value=0.00028 Score=54.07 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=31.4
Q ss_pred ceeccC-CCCCcceeEEEeCC-------------CCCCHHHHHHHHHHhh
Q 047709 2 GKVLPS-LNGKLTGMAFRLPP-------------KKATYDDIKAAHKEAS 37 (93)
Q Consensus 2 ~~vlPe-L~Gkl~g~a~RVPt-------------k~~~~~~in~~~k~aa 37 (93)
.+++|+ .+.|++++++|||+ ++++.|||++++++++
T Consensus 250 ~kil~~~~~~~v~~t~vrVPv~~g~~~~v~v~l~~~~t~eei~~~l~~~~ 299 (367)
T 1t4b_A 250 NKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHN 299 (367)
T ss_dssp HHHHTCSSCCCEEEECCEESCSSEEEEEEEEEESSCCCHHHHHHHHHHHC
T ss_pred HHHhCcCCCceEEEEEEEcCccceEEEEEEEEECCCCCHHHHHHHHHhcC
Confidence 467766 56699999999999 8899999999999984
No 35
>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*
Probab=96.64 E-value=0.00042 Score=53.01 Aligned_cols=38 Identities=11% Similarity=0.240 Sum_probs=33.2
Q ss_pred ceeccCCCC----------CcceeEEEeCC-------------CCCCHHHHHHHHHHhhcC
Q 047709 2 GKVLPSLNG----------KLTGMAFRLPP-------------KKATYDDIKAAHKEASQG 39 (93)
Q Consensus 2 ~~vlPeL~G----------kl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~ 39 (93)
.++||+|+| +++++++|||+ ++++.|||+++++++.++
T Consensus 215 ~kil~~l~g~~~~~~~~~~~v~~t~~rVPv~rG~~~tv~v~l~~~~t~eei~~~l~~~~~~ 275 (359)
T 4dpk_A 215 FRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGE 275 (359)
T ss_dssp HHHHHTSCCSCCCSCGGGCEEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHTCCCH
T ss_pred HHHHhhcccccccccccCCceEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHhhcc
Confidence 467888887 79999999999 789999999999998764
No 36
>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*
Probab=96.60 E-value=0.00042 Score=53.01 Aligned_cols=38 Identities=11% Similarity=0.240 Sum_probs=33.4
Q ss_pred ceeccCCCC----------CcceeEEEeCC-------------CCCCHHHHHHHHHHhhcC
Q 047709 2 GKVLPSLNG----------KLTGMAFRLPP-------------KKATYDDIKAAHKEASQG 39 (93)
Q Consensus 2 ~~vlPeL~G----------kl~g~a~RVPt-------------k~~~~~~in~~~k~aa~~ 39 (93)
.++||+|+| +++++++|||+ ++++.|||+++++++.++
T Consensus 215 ~kil~~l~g~~~~~~~~~~~v~~t~~rVPv~rG~~~tv~v~l~~~~t~eei~~~l~~~~~~ 275 (359)
T 4dpl_A 215 FRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGE 275 (359)
T ss_dssp HHHHTTSCCSSCCSCGGGCEEEEECEECSCSSCEEEEEEEEESSCCCHHHHHHHHHTCCCH
T ss_pred HHHHhhcccccccccccCCceEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHhhcc
Confidence 467888887 79999999999 789999999999998764
No 37
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}
Probab=96.19 E-value=0.001 Score=50.27 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=30.4
Q ss_pred eeccCCCC--------CcceeEEEeCC-------------CCCCHHHHHHHHHHhhc
Q 047709 3 KVLPSLNG--------KLTGMAFRLPP-------------KKATYDDIKAAHKEASQ 38 (93)
Q Consensus 3 ~vlPeL~G--------kl~g~a~RVPt-------------k~~~~~~in~~~k~aa~ 38 (93)
++||+++| |++++++|||+ ++++.|||+++++++..
T Consensus 220 ~~l~~~~g~~~~~~~~~v~~~~~rvP~~~G~~~~i~~~l~~~~t~eei~~~~~~~~~ 276 (354)
T 1ys4_A 220 KLLGTLKDGKVELANFKISASCNRVAVIDGHTESIFVKTKEGAEPEEIKEVMDKFDP 276 (354)
T ss_dssp HHTSEEETTEEECCCCEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHHHCCT
T ss_pred HHHhccccccccCCCceEEEEEEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhc
Confidence 34566666 79999999999 78999999999999874
No 38
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}
Probab=93.16 E-value=0.019 Score=44.29 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=30.7
Q ss_pred eeccCCCC-------------CcceeEEEeCC-------------C--CCCHHHHHHHHHHhhcC
Q 047709 3 KVLPSLNG-------------KLTGMAFRLPP-------------K--KATYDDIKAAHKEASQG 39 (93)
Q Consensus 3 ~vlPeL~G-------------kl~g~a~RVPt-------------k--~~~~~~in~~~k~aa~~ 39 (93)
++|+.++| +++++++|||+ + +++.|||+++++++..+
T Consensus 237 kiL~~l~~~~~~~~~~~~~~~~v~ft~~rVPv~rG~~~tv~v~l~~~~~~t~eei~~~l~~~y~~ 301 (381)
T 3hsk_A 237 KILGGVNAEGTEFVPIPESEMKVSAQCNRVPVIDGHTECISLRFANRPAPSVEDVKQCLREYECA 301 (381)
T ss_dssp HHTCEECTTSSSEECCCTTTCEEEEECCBCSCSSCCEEEEEEEESSSSCCCHHHHHHHHHHCBCH
T ss_pred HHhhhcccccccccccccCCCceEEEEEEeceeccEEEEEEEEeCCCCCCCHHHHHHHHHHhhcc
Confidence 45666666 78999999999 6 79999999999988643
No 39
>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A
Probab=90.12 E-value=0.12 Score=39.23 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=24.0
Q ss_pred CCCcceeEEEeCC------------CCCCHHHHHHHHHHhhc
Q 047709 9 NGKLTGMAFRLPP------------KKATYDDIKAAHKEASQ 38 (93)
Q Consensus 9 ~Gkl~g~a~RVPt------------k~~~~~~in~~~k~aa~ 38 (93)
+++++++++|||+ +.- .+||+++++++-+
T Consensus 234 ~~~v~ft~~rvP~~rG~~~ti~~~l~~~-~~ei~~~~~~~y~ 274 (352)
T 2nqt_A 234 DVSVSFTPVLIPASRGILATCTARTRSP-LSQLRAAYEKAYH 274 (352)
T ss_dssp CCEEEEEEEECSCSSCEEEEEEEECCSC-HHHHHHHHHHHHT
T ss_pred CCCEEEEEEEEccccEEEEEEEEEECCC-HHHHHHHHHHhhC
Confidence 6789999999999 323 8999999998643
No 40
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=74.24 E-value=1.5 Score=29.10 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhcCccccccceeccc
Q 047709 26 YDDIKAAHKEASQGEMKGIFGYIEDD 51 (93)
Q Consensus 26 ~~~in~~~k~aa~~~lkgil~~t~~~ 51 (93)
.+|+++.+++..+...+|++-|++|.
T Consensus 72 p~eVdkm~~k~~q~~~dGl~iYCDde 97 (126)
T 2rbg_A 72 KNEVDIFLKNLEKSEVDGLLVYCDDE 97 (126)
T ss_dssp GGGHHHHHHHHTTCCCCEEEEEECGG
T ss_pred HHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 47899999999999999999999875
No 41
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=73.68 E-value=0.17 Score=29.84 Aligned_cols=17 Identities=35% Similarity=0.702 Sum_probs=13.3
Q ss_pred eccCCCCCcceeEEEeC
Q 047709 4 VLPSLNGKLTGMAFRLP 20 (93)
Q Consensus 4 vlPeL~Gkl~g~a~RVP 20 (93)
.-|+++||+|||=.-.+
T Consensus 16 ~~p~~A~KITGMLLE~d 32 (61)
T 1i2t_A 16 MQPAFASKITGMLLELS 32 (61)
T ss_dssp HCGGGHHHHHHHHTTSC
T ss_pred hCcccccchhhhhccCC
Confidence 45999999999976433
No 42
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A
Probab=71.51 E-value=1.7 Score=33.10 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.1
Q ss_pred CcceeEEEeCC-------------CCCCHHHHHHHHHHh
Q 047709 11 KLTGMAFRLPP-------------KKATYDDIKAAHKEA 36 (93)
Q Consensus 11 kl~g~a~RVPt-------------k~~~~~~in~~~k~a 36 (93)
+++...+|||+ ++++.++|.++++++
T Consensus 238 ~v~ftp~rVPv~rG~~~tv~v~l~~~~s~eei~~~l~~~ 276 (366)
T 3pwk_A 238 AVSATCVRIPVLSAHSESVYIETKEVAPIEEVKAAIAAF 276 (366)
T ss_dssp EEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHHHS
T ss_pred CeEEEEEEechhccEEEEEEEEECCCCCHHHHHHHHHhC
Confidence 57888999999 779999999999986
No 43
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=68.32 E-value=8.9 Score=23.55 Aligned_cols=35 Identities=6% Similarity=0.092 Sum_probs=25.8
Q ss_pred eEEEeCCCCCCHHHHHHHHHHhhcC-ccccccceecc
Q 047709 15 MAFRLPPKKATYDDIKAAHKEASQG-EMKGIFGYIED 50 (93)
Q Consensus 15 ~a~RVPtk~~~~~~in~~~k~aa~~-~lkgil~~t~~ 50 (93)
.|+||| +.+++.++.+.+.+.-+= +-...|.|.++
T Consensus 16 vairvp-~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 16 VVMKTQ-PGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEEC-TTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEECC-CCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 799999 778999999988876542 22356777654
No 44
>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}
Probab=66.39 E-value=2.2 Score=32.72 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=23.9
Q ss_pred CCcceeEEEeCC-------------CCCCHHHHHHHHHHh
Q 047709 10 GKLTGMAFRLPP-------------KKATYDDIKAAHKEA 36 (93)
Q Consensus 10 Gkl~g~a~RVPt-------------k~~~~~~in~~~k~a 36 (93)
-+++...+|||+ ++++.++|.++++++
T Consensus 267 i~Vs~t~vrVPv~rGh~~tv~v~~~~~~~~eei~~~l~~~ 306 (377)
T 3uw3_A 267 VPVDGLCVRIGAMRCHSQALTIKLKKDVPLDEINGILASA 306 (377)
T ss_dssp CCEEEECCBCSBSSEEEEEEEEEESSCCCHHHHHHHHHTS
T ss_pred ceEEEEeEEecccceEEEEEEEEeCCCCCHHHHHHHHHhC
Confidence 368888999999 789999999999987
No 45
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=58.40 E-value=1.9 Score=29.33 Aligned_cols=18 Identities=39% Similarity=0.757 Sum_probs=14.6
Q ss_pred eccCCCCCcceeEEEeCC
Q 047709 4 VLPSLNGKLTGMAFRLPP 21 (93)
Q Consensus 4 vlPeL~Gkl~g~a~RVPt 21 (93)
+-|+++||||||=+=.+.
T Consensus 81 ~~p~~A~KITGMLLEmd~ 98 (144)
T 1g9l_A 81 MHPTLAGKITGMLLEIDN 98 (144)
T ss_dssp HTTSCCSSHHHHTTTSSS
T ss_pred hCccccchhhhhhccCCH
Confidence 459999999999776565
No 46
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=58.12 E-value=0.33 Score=30.43 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=21.4
Q ss_pred eccCCCCCcceeEEEeCC----C-CCCHHHHHHHHHHhh
Q 047709 4 VLPSLNGKLTGMAFRLPP----K-KATYDDIKAAHKEAS 37 (93)
Q Consensus 4 vlPeL~Gkl~g~a~RVPt----k-~~~~~~in~~~k~aa 37 (93)
.-|+++||+|||=.-.+. . -.+-|.+++-+.+|.
T Consensus 38 ~~p~~AgKITGMLLEmd~~ElL~Lle~~e~L~~kV~EA~ 76 (85)
T 1nmr_A 38 INPAAAAKVTGMLLEMDNGEILNLLDTPGLLDAKVQEAL 76 (85)
T ss_dssp TCHHHHHHHHHHCSCTHHHHHHTTCCTHHHHHHHHHHHH
T ss_pred hCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHH
Confidence 458999999999765554 1 123344666666553
No 47
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=58.01 E-value=0.34 Score=30.79 Aligned_cols=18 Identities=44% Similarity=0.746 Sum_probs=14.1
Q ss_pred eccCCCCCcceeEEEeCC
Q 047709 4 VLPSLNGKLTGMAFRLPP 21 (93)
Q Consensus 4 vlPeL~Gkl~g~a~RVPt 21 (93)
.-|+++||+|||=.=.+.
T Consensus 37 ~~pelAgKITGMLLEmd~ 54 (92)
T 1ifw_A 37 SNEEAAGKITGMILDLPP 54 (92)
T ss_dssp CCHHHHHHHHHHHTTSCH
T ss_pred cCccccchhhHhHhcCCH
Confidence 458999999999775554
No 48
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Probab=55.27 E-value=5.2 Score=30.53 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=23.4
Q ss_pred CcceeEEEeCC-------------CCCCHHHHHHHHHHh
Q 047709 11 KLTGMAFRLPP-------------KKATYDDIKAAHKEA 36 (93)
Q Consensus 11 kl~g~a~RVPt-------------k~~~~~~in~~~k~a 36 (93)
+++...+|||+ ++++.+|+.++++++
T Consensus 260 ~V~~t~vrVPv~rGh~~tv~v~~~~~~~~~ei~~~l~~~ 298 (370)
T 3pzr_A 260 PIDGTCVRIGAMRCHSQALTIKLKQNIPLDEIEEMIATH 298 (370)
T ss_dssp CEECCCCEESCSSEEEEEEEEEESSCCCHHHHHHHHHTS
T ss_pred eEEEEeEEecccceEEEEEEEEeCCCCCHHHHHHHHHhC
Confidence 67888999999 789999999999987
No 49
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=51.52 E-value=1.1 Score=28.21 Aligned_cols=18 Identities=39% Similarity=0.757 Sum_probs=14.6
Q ss_pred eccCCCCCcceeEEEeCC
Q 047709 4 VLPSLNGKLTGMAFRLPP 21 (93)
Q Consensus 4 vlPeL~Gkl~g~a~RVPt 21 (93)
.-|+++||+|||-.-.+.
T Consensus 35 ~~p~~A~KITGMLLEmd~ 52 (88)
T 3kuj_A 35 MHPTLAGKITGMLLEIDN 52 (88)
T ss_dssp HCTTTHHHHHHHHTTSCH
T ss_pred hCCCccchhhhHhhcCCH
Confidence 458999999999886554
No 50
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=51.06 E-value=35 Score=21.00 Aligned_cols=28 Identities=7% Similarity=0.292 Sum_probs=22.4
Q ss_pred CCCCcceeEEEeCCCCCCHHHHHHHHHHhhc
Q 047709 8 LNGKLTGMAFRLPPKKATYDDIKAAHKEASQ 38 (93)
Q Consensus 8 L~Gkl~g~a~RVPtk~~~~~~in~~~k~aa~ 38 (93)
++|.+ +++||| .+++++++.+-++....
T Consensus 13 ~~gdi--~~~~v~-~~i~~~~L~~kv~~~~~ 40 (89)
T 1vd2_A 13 YRGDI--MITHFE-PSISFEGLCNEVRDMCS 40 (89)
T ss_dssp SSSCE--EEEEEC-TTCCHHHHHHHHHHHTT
T ss_pred eCCeE--EEEECC-CCCCHHHHHHHHHHHhC
Confidence 56664 689999 68999999998887654
No 51
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=50.24 E-value=0.43 Score=29.90 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=14.4
Q ss_pred eeccCCCCCcceeEEEeCC
Q 047709 3 KVLPSLNGKLTGMAFRLPP 21 (93)
Q Consensus 3 ~vlPeL~Gkl~g~a~RVPt 21 (93)
..-|+++||+|||=.-.+.
T Consensus 36 ~~~p~~AgKITGMLLEmd~ 54 (85)
T 2dyd_A 36 QLEHDQAAKVTGMLLEMDQ 54 (85)
T ss_dssp CSCHHHHHHHHHHHHHHCH
T ss_pred HhCccccchhhhhhhcCCH
Confidence 3458999999999765554
No 52
>1o9a_B FNBB, fibronectin binding protein; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Streptococcus dysgalactiae}
Probab=50.14 E-value=2.3 Score=22.12 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=14.0
Q ss_pred CceeecCCeEEEEEEcCCCCc
Q 047709 70 AGISLSDNFEKLVSWYDSDAA 90 (93)
Q Consensus 70 ~t~~~~~~~vkl~~WyDNE~g 90 (93)
+|..+.+..-|+..-|||||-
T Consensus 13 sttevedskpk~sihfdnewp 33 (36)
T 1o9a_B 13 STTEVEDSKPKLSIHFDNEWP 33 (36)
T ss_dssp CCBCCCCSCCCCBCCCCCCCS
T ss_pred CceeeecCCcceEEeccCcCC
Confidence 344445556677777899994
No 53
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=49.65 E-value=22 Score=22.98 Aligned_cols=30 Identities=3% Similarity=0.234 Sum_probs=25.5
Q ss_pred CCCcceeEEEeCC-------CC-CCHHHHHHHHHHhhc
Q 047709 9 NGKLTGMAFRLPP-------KK-ATYDDIKAAHKEASQ 38 (93)
Q Consensus 9 ~Gkl~g~a~RVPt-------k~-~~~~~in~~~k~aa~ 38 (93)
+|+..+.+.||+. .- ++.+...++|+.|+.
T Consensus 74 KG~~~~wva~Vk~G~ilfEi~g~~~~~~a~eAlr~a~~ 111 (118)
T 2ftc_I 74 KGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAH 111 (118)
T ss_pred CCCccEEEEEECCCCEEEEEeccCCHHHHHHHHHHHHh
Confidence 4889999999998 33 888999999998874
No 54
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A
Probab=45.64 E-value=8.4 Score=28.97 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=22.2
Q ss_pred CcceeEEEeCC-------------CCCCHHHHHHHHHHh
Q 047709 11 KLTGMAFRLPP-------------KKATYDDIKAAHKEA 36 (93)
Q Consensus 11 kl~g~a~RVPt-------------k~~~~~~in~~~k~a 36 (93)
+++...+|||+ ++++.+||.++++.+
T Consensus 241 ~v~ft~vrvPv~rGh~~tv~v~l~~~~s~eei~~~l~~~ 279 (344)
T 3tz6_A 241 LVSGTCVRVPVFTGHSLSINAEFAQPLSPERARELLDGA 279 (344)
T ss_dssp EEEEECCBCSCSSCEEEEEEEEESSCCCHHHHHHHHHHC
T ss_pred ceEEEEEEeceeceEEEEEEEEECCCCCHHHHHHHHhcC
Confidence 57788899998 789999999999843
No 55
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=45.46 E-value=21 Score=23.68 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=26.0
Q ss_pred CCCcceeEEEeCC-------CCCCHHHHHHHHHHhhc
Q 047709 9 NGKLTGMAFRLPP-------KKATYDDIKAAHKEASQ 38 (93)
Q Consensus 9 ~Gkl~g~a~RVPt-------k~~~~~~in~~~k~aa~ 38 (93)
+|++++.+-||+. .-++.+...++|+.|+.
T Consensus 86 KG~~~~wva~Vk~G~ilfEi~g~~~~~A~eAlr~a~~ 122 (136)
T 3r8s_M 86 KGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAA 122 (136)
T ss_dssp CCEEEEEEEEECTTCEEEEEESSCHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 5789999999999 45788999999999875
No 56
>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1
Probab=41.03 E-value=25 Score=26.50 Aligned_cols=28 Identities=14% Similarity=0.110 Sum_probs=23.7
Q ss_pred CCcceeEEEeCC------------CCCCHHHHHHHHHHhhc
Q 047709 10 GKLTGMAFRLPP------------KKATYDDIKAAHKEASQ 38 (93)
Q Consensus 10 Gkl~g~a~RVPt------------k~~~~~~in~~~k~aa~ 38 (93)
.+++....|||+ + ++.+||+++++++-+
T Consensus 234 ~~v~ftp~rvPv~rG~~~tv~v~l~-~~~eei~~~l~~~Y~ 273 (351)
T 1vkn_A 234 VNVVFTPHLVPMTRGILSTIYVKTD-KSLEEIHEAYLEFYK 273 (351)
T ss_dssp CEEEEEEEEESSSSCEEEEEEEECS-SCHHHHHHHHHHHHT
T ss_pred CCEEEEEEEeccccEEEEEEEEEEc-CCHHHHHHHHHHhhC
Confidence 468899999999 6 899999999987543
No 57
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=38.87 E-value=14 Score=23.59 Aligned_cols=45 Identities=11% Similarity=0.088 Sum_probs=22.8
Q ss_pred HHHHHHHHhhcCccccccceeccceEeecCCCCCcceEEeCCCcee
Q 047709 28 DIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFDAKAGIS 73 (93)
Q Consensus 28 ~in~~~k~aa~~~lkgil~~t~~~~VS~Df~g~~~s~i~d~~~t~~ 73 (93)
+|.+-++.|.+. +...+.-.....|.+-++|.+...++|++++..
T Consensus 5 ~i~~~~~~a~e~-~p~~~~~~~~~~v~v~InG~~~~~LvDTGAs~s 49 (148)
T 2i1a_A 5 AIDEQLRNAIEY-TPEMFTQVPMLYINIEINNYPVKAFVDTGAQTT 49 (148)
T ss_dssp -------------------CCCCCEEEEEETTEEEEEEECTTCSSC
T ss_pred HHHHHHHhhhhh-CchhhcccceEEEEEEECCEEEEEEEECCCCcc
Confidence 444555555442 222344456788999999999999999998753
No 58
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=37.12 E-value=48 Score=21.17 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=28.0
Q ss_pred EEEeCCCCCCHHHHHH-HHHHhhcCccccccceeccceEee
Q 047709 16 AFRLPPKKATYDDIKA-AHKEASQGEMKGIFGYIEDDVVST 55 (93)
Q Consensus 16 a~RVPtk~~~~~~in~-~~k~aa~~~lkgil~~t~~~~VS~ 55 (93)
.+||| +.+|..+|++ ++++|..-||-+.|+=-++-+.++
T Consensus 33 ~l~~~-~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~ 72 (108)
T 2v1y_A 33 TLECL-REATLITIKHELFKEARKYPLHQLLQDESSYIFVS 72 (108)
T ss_dssp EEEEE-TTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEE
T ss_pred EEEee-ccccHHHHHHHHHHHHHhCchHHHhCCccceEEEE
Confidence 34555 7889999988 668898888888777555544433
No 59
>1oao_C CODH, carbon monoxide dehydrogenase/acetyl-COA synthase alpha; oxidoreductase-transferase complex, electron transfer, oxidoreductase; 1.90A {Moorella thermoacetica} SCOP: e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A 3s2x_A
Probab=36.52 E-value=13 Score=31.23 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHhhcCcccccccee--ccceEeec
Q 047709 23 KATYDDIKAAHKEASQGEMKGIFGYI--EDDVVSTD 56 (93)
Q Consensus 23 ~~~~~~in~~~k~aa~~~lkgil~~t--~~~~VS~D 56 (93)
.=-++.||++++++|+|.+..+--|+ ++|.-||-
T Consensus 561 ~G~y~gVNe~V~~~S~G~ve~v~LYSime~P~TsCG 596 (729)
T 1oao_C 561 KGIWKSVNDYLYTASNRNLEQVCLYTLMENPMTSCG 596 (729)
T ss_dssp TTEEHHHHHHHHHHTTTSCCCCCTTCSSSSCCCCCS
T ss_pred cceeccHHHHHHHhcCCceEEEEEEEeccCCCccch
Confidence 34578999999999999999888887 68887774
No 60
>2ich_A Putative ATTH; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: NHE; 2.00A {Nitrosomonas europaea} SCOP: b.176.1.1
Probab=36.00 E-value=9.6 Score=28.66 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=15.7
Q ss_pred CCceeecCCeEEE--EEEcCCCCccC
Q 047709 69 KAGISLSDNFEKL--VSWYDSDAAFE 92 (93)
Q Consensus 69 ~~t~~~~~~~vkl--~~WyDNE~gys 92 (93)
.-+..++|+.++| .+|||-|||-+
T Consensus 173 ~Gtl~~~G~~~~V~G~aW~DrEWss~ 198 (335)
T 2ich_A 173 SGIINRQGEDIPVTGTAWLDREWSSE 198 (335)
T ss_dssp EEEEEESSCEEEEEEEEEEEEEEESS
T ss_pred EEEEEECCEEEEEEecEEEcccCcCc
Confidence 3344556664444 48999999853
No 61
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=29.18 E-value=17 Score=23.96 Aligned_cols=29 Identities=7% Similarity=0.009 Sum_probs=22.6
Q ss_pred CcceeEEEeCC--------------CCCCHHHHHHHHHHhhcC
Q 047709 11 KLTGMAFRLPP--------------KKATYDDIKAAHKEASQG 39 (93)
Q Consensus 11 kl~g~a~RVPt--------------k~~~~~~in~~~k~aa~~ 39 (93)
+|+=..+|||+ +.+|.++|.+++++.+..
T Consensus 53 ~f~~~~vkv~v~~K~~~~~~~VC~C~gVT~~~I~eAv~~Ga~t 95 (130)
T 2hu9_A 53 VFRKGELKTRVGVKEREEPKPVCYCNRVTEKMLLEAAEKFGKE 95 (130)
T ss_dssp EEEGGGBSSCCGGGCSSSCCEEETTTTEEHHHHHHHHHHHCHH
T ss_pred eEEecceEEEeeccCCCCCCEEEEccCCcHHHHHHHHHcCCHH
Confidence 45555689998 778999999999876543
No 62
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=27.46 E-value=23 Score=23.47 Aligned_cols=30 Identities=13% Similarity=0.029 Sum_probs=25.4
Q ss_pred CCCcceeEEEeCC-------CCCCHHHHHHHHHHhhc
Q 047709 9 NGKLTGMAFRLPP-------KKATYDDIKAAHKEASQ 38 (93)
Q Consensus 9 ~Gkl~g~a~RVPt-------k~~~~~~in~~~k~aa~ 38 (93)
+|+.++.+.||+. .-++.+...++|+.|+.
T Consensus 87 KG~~~~wva~Vk~G~ilfEi~gv~~~~A~eAlr~a~~ 123 (135)
T 3bbo_O 87 KGSPEYWVAVVKPGRILYEISGVAENIARRAVAIAAS 123 (135)
T ss_dssp CSCSSCCCCCCCTTCEEEEECSSCTTHHHHHHHHHHH
T ss_pred CCCceEEEEEECCCCEEEEEecCCHHHHHHHHHHHHh
Confidence 5789999999998 55788899999998875
No 63
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=27.39 E-value=71 Score=19.66 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=16.3
Q ss_pred eEEEeCCCCCCHHHHHHHHHH
Q 047709 15 MAFRLPPKKATYDDIKAAHKE 35 (93)
Q Consensus 15 ~a~RVPtk~~~~~~in~~~k~ 35 (93)
.|+||| ..+++.++..-+..
T Consensus 24 iAIrvP-~di~~~~L~dKi~~ 43 (85)
T 1ip9_A 24 FALMLK-GDTTYKELRSKIAP 43 (85)
T ss_dssp EEEEEC-SCCCHHHHHHHHHH
T ss_pred EEEECC-CCCCHHHHHHHHHH
Confidence 699999 56889998887765
No 64
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}
Probab=25.50 E-value=41 Score=23.92 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=15.8
Q ss_pred EeCCCCCCHHHHHHHHHHhh
Q 047709 18 RLPPKKATYDDIKAAHKEAS 37 (93)
Q Consensus 18 RVPtk~~~~~~in~~~k~aa 37 (93)
|.|..++..+|||+|.=|++
T Consensus 52 rlp~~~V~W~EINAAwGq~~ 71 (210)
T 4ddp_A 52 RLPSVPVEWNEINAAWGQTV 71 (210)
T ss_dssp CBTTBCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 34557899999999987765
No 65
>3tia_A Neuraminidase; 6-bladed beta-propeller, calcium binding, glycosylation, ANT hydrolase-hydrolase inhibitor complex; HET: NAG BMA MAN LNV; 1.80A {Influenza a virus} PDB: 3tib_A* 3tic_A* 2bat_A* 1ivd_A* 1inh_A* 1inw_A* 1inx_A* 1ivc_A* 1ing_A* 1ive_A* 1ivf_A* 1ivg_A* 1nn2_A* 2aep_A* 2aeq_A* 4gzq_A* 4gzo_A* 4gzp_A* 4gzt_A* 4gzs_A* ...
Probab=25.30 E-value=31 Score=27.49 Aligned_cols=29 Identities=21% Similarity=0.118 Sum_probs=20.5
Q ss_pred cceeccceEeecCCCCCcceEEeCCCceeecC
Q 047709 45 FGYIEDDVVSTDFVGDNRSSIFDAKAGISLSD 76 (93)
Q Consensus 45 l~~t~~~~VS~Df~g~~~s~i~d~~~t~~~~~ 76 (93)
+=++.+|.||||-.... .|-..++..+++
T Consensus 114 v~VtREPyvSC~p~~C~---~FaL~QGt~L~~ 142 (469)
T 3tia_A 114 IWVTREPYVSCDPGKCY---QFALGQGTTLDN 142 (469)
T ss_dssp CEEEEEEEEEECSSCEE---EEEEEEEEESSS
T ss_pred eEEEecceeecCCccee---EEeecccccccC
Confidence 56789999999977654 455566665554
No 66
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=25.16 E-value=33 Score=26.24 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=38.4
Q ss_pred eccCCC-CCcceeEEEeCCCCCCHHHHHHHHHHhhc--Cccccc-cceeccceEeecCCCCCcceEEe
Q 047709 4 VLPSLN-GKLTGMAFRLPPKKATYDDIKAAHKEASQ--GEMKGI-FGYIEDDVVSTDFVGDNRSSIFD 67 (93)
Q Consensus 4 vlPeL~-Gkl~g~a~RVPtk~~~~~~in~~~k~aa~--~~lkgi-l~~t~~~~VS~Df~g~~~s~i~d 67 (93)
|.|+.. |.+.|..+-+|.-.+|-++|.+.++.-.+ +.+... -...+...|+.||.|..-...||
T Consensus 111 v~Pev~l~~y~~l~v~~~~~eVtde~Vd~~l~~l~~~~a~~~~~~~~~~~gD~V~i~y~g~~dG~~fd 178 (432)
T 1w26_A 111 VYPEVELQGLEAIEVEKPIVEVTDADVDGMLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFE 178 (432)
T ss_dssp ECCCCCCCCTTTCBCCEEECCCCHHHHHHHHHHHHHHTCEECCCSSCCCTTCEEEECEEEESSSCBCS
T ss_pred cCCCeecCCCCceEEEecCCCcCHHHHHHHHHHHHHhCCeeeecCCCCCCCCEEEEEEEEeeCCeEcc
Confidence 567754 33667776666677888999988865432 334322 11345578888887643333344
No 67
>3c0f_B Uncharacterized protein AF_1514; hot DOG fold, sulphur SAD, methylated, unknown function; HET: MLY; 1.80A {Archaeoglobus fulgidus dsm 4304}
Probab=24.90 E-value=28 Score=21.83 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=10.8
Q ss_pred EEEEEEcCCCCcc
Q 047709 79 EKLVSWYDSDAAF 91 (93)
Q Consensus 79 vkl~~WyDNE~gy 91 (93)
.-|++|+|-+-||
T Consensus 34 ~mLLaW~D~krg~ 46 (91)
T 3c0f_B 34 GILLSVHDSXTGY 46 (91)
T ss_dssp EEEEEEEETTTCC
T ss_pred cEEEEEeecccCc
Confidence 6788999988776
No 68
>4a94_C Carboxypeptidase inhibitor; hydrolase-hydrolase inhibitor complex, CPA4, NVCI, PCI, LCI; 1.70A {Nerita versicolor}
Probab=23.69 E-value=23 Score=19.60 Aligned_cols=8 Identities=38% Similarity=0.625 Sum_probs=6.6
Q ss_pred cCCCCccC
Q 047709 85 YDSDAAFE 92 (93)
Q Consensus 85 yDNE~gys 92 (93)
-||+|||.
T Consensus 30 adndfgye 37 (53)
T 4a94_C 30 ADNDFGYE 37 (53)
T ss_dssp CSSTTSEE
T ss_pred ccCCCCce
Confidence 49999984
No 69
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=21.85 E-value=53 Score=23.52 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=16.3
Q ss_pred EeCCCCCCHHHHHHHHHHhh
Q 047709 18 RLPPKKATYDDIKAAHKEAS 37 (93)
Q Consensus 18 RVPtk~~~~~~in~~~k~aa 37 (93)
|.|..++..+|||+|.=|++
T Consensus 26 rl~~~~V~W~EINAAwGq~~ 45 (220)
T 3vp7_A 26 SIPESVVPWKEINAALGQLI 45 (220)
T ss_dssp CBTTBCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 45667899999999997765
Done!