RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 047709
(93 letters)
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia
coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A*
1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Length = 330
Score = 168 bits (428), Expect = 1e-53
Identities = 64/99 (64%), Positives = 74/99 (74%), Gaps = 13/99 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
VGKVLP LNGKLTGMAFR+P K ATY+ IKAA K A++GEMKG+ GY
Sbjct: 214 VGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGY 273
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
EDDVVSTDF G+ +S+FDAKAGI+L+DNF KLVSWYD
Sbjct: 274 TEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYD 312
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis,
malaria, structural genomics; HET: NAD; 1.90A
{Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A*
3chz_A 3cie_A* 3cif_A* 3sth_A*
Length = 354
Score = 168 bits (427), Expect = 3e-53
Identities = 56/99 (56%), Positives = 67/99 (67%), Gaps = 13/99 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
VGKV+P+LNGKLTGMA R+P K A+ ++I A KEAS G MKGI GY
Sbjct: 235 VGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGY 294
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
DDVVSTDF+G SSIFD A I+L+D+F KL+SWYD
Sbjct: 295 TSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYD 333
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding
rossmann-fold domain, alpha and beta protein,
oxidoreductase; HET: NAD; 2.00A {Saccharomyces
cerevisiae} PDB: 2i5p_O*
Length = 332
Score = 166 bits (422), Expect = 1e-52
Identities = 58/99 (58%), Positives = 69/99 (69%), Gaps = 13/99 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
VGKVLP L GKLTGMAFR+P K+ TYD+IK K A++G++KG+ GY
Sbjct: 215 VGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGY 274
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
ED VVS+DF+GD+ SSIFDA AGI LS F KLVSWYD
Sbjct: 275 TEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYD 313
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH,
RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET:
NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Length = 337
Score = 165 bits (421), Expect = 1e-52
Identities = 64/99 (64%), Positives = 78/99 (78%), Gaps = 13/99 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
VGKVLP LNGKLTGM+FR+P K A+YD IK+A K AS+G++KGI GY
Sbjct: 219 VGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGY 278
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
+E+D+VSTDFVGD+RSSIFDAKAGI+L+DNF KLV+WYD
Sbjct: 279 VEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYD 317
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase,
structural genomics, structural genomics CON SGC,
glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB:
3pfw_O* 2vyn_D* 2vyv_D*
Length = 346
Score = 166 bits (422), Expect = 2e-52
Identities = 57/99 (57%), Positives = 67/99 (67%), Gaps = 13/99 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
V KV+P L GKLTGMAFR+P + A Y IK A K A++G M GI Y
Sbjct: 221 VTKVIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAY 280
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
ED+VVSTDF+GD SSIFDAKAGI+L+DNF KL+SWYD
Sbjct: 281 TEDEVVSTDFLGDTHSSIFDAKAGIALNDNFVKLISWYD 319
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural
genomics, PSI, structural genomi pathogenic protozoa
consortium; HET: NAD AES; 2.25A {Plasmodium falciparum}
SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Length = 345
Score = 165 bits (421), Expect = 2e-52
Identities = 58/99 (58%), Positives = 71/99 (71%), Gaps = 13/99 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
VGKVLP LNGKLTG+AFR+P K A Y+++ K+A++G +KGI GY
Sbjct: 228 VGKVLPELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGY 287
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
ED+VVS DFV DNRSSIFD KAG++L+DNF KLVSWYD
Sbjct: 288 TEDEVVSQDFVHDNRSSIFDMKAGLALNDNFFKLVSWYD 326
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann
fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A
{Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O*
1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A*
1gpd_G* 4gpd_1
Length = 335
Score = 164 bits (418), Expect = 4e-52
Identities = 57/99 (57%), Positives = 67/99 (67%), Gaps = 13/99 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
VGKV+P LNGKLTGMAFR+P K A YDDIK K+AS+G +KGI GY
Sbjct: 217 VGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGY 276
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
E VVS+DF D SS FDA AGI+L+D+F KL+SWYD
Sbjct: 277 TEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYD 315
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso;
irreversible inhibitor, protein-ligand complex,X-RAY,
glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma
cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A*
1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Length = 359
Score = 161 bits (410), Expect = 1e-50
Identities = 46/103 (44%), Positives = 62/103 (60%), Gaps = 17/103 (16%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
VG V+PS GKLTGM+FR+P + + +I AA K AS+ MKGI GY
Sbjct: 232 VGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGY 291
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISL----SDNFEKLVSWYD 86
++++VS DF+ DNRSSI+D+KA + F K+VSWYD
Sbjct: 292 TDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWYD 334
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase;
microspectrophotometry, reaction intermediate,
dehydrogenase phosphate binding site; HET: G3H NAD;
1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3
d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O*
1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Length = 334
Score = 142 bits (360), Expect = 2e-43
Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 13/99 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
V VLP L GKL GMA R+P K+ T +++ AA K A++GE+KGI Y
Sbjct: 215 VALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAY 274
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
E+ +VS D+ G SS DA + + + K+VSWYD
Sbjct: 275 SEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYD 313
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A*
3k2b_A* 3rvd_A* 2pkq_O*
Length = 337
Score = 131 bits (333), Expect = 2e-39
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 13/99 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
V VLP+L GKL G+A R+P KK +++ AA +E++ E+KGI
Sbjct: 217 VALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSV 276
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
++ +VS DF + SS D+ + + D+ K+++WYD
Sbjct: 277 CDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYD 315
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural
genomics, national institute of allergy AN infectious
diseases; 2.55A {Bacillus anthracis}
Length = 345
Score = 131 bits (333), Expect = 3e-39
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 13/99 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
+ KVLP LNGKL GMA R+P + T + I A K + G +KGI +
Sbjct: 218 LAKVLPHLNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEF 277
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
E+ +VS DF + S+I D + + + D K+++WYD
Sbjct: 278 SEEPLVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYD 316
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 131 bits (333), Expect = 3e-39
Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 15/101 (14%)
Query: 1 VGKVLPSLNGKLTGMAFRLP--------------PKKATYDDIKAAHKEASQG-EMKGIF 45
VG VLP L GKL G + R+P K T ++I + ++AS+ E+KGI
Sbjct: 238 VGLVLPELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGIL 297
Query: 46 GYIEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
GY ED +VS+D G++ SSI D + L + F K++SWYD
Sbjct: 298 GYTEDPIVSSDIKGNSHSSIVDGLETMVLENGFAKILSWYD 338
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold,
protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A
{Synechococcus SP} PDB: 2duu_A
Length = 380
Score = 132 bits (334), Expect = 4e-39
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 13/99 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
V V+P L GKL G+A R+P K + + ++ASQ MKGI Y
Sbjct: 219 VALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKY 278
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
+ +VS+DF G + SSI D+ + + + K+++WYD
Sbjct: 279 SDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYD 317
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold,
oxidoreductase-protein binding complex; HET: NAD; 2.20A
{Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Length = 339
Score = 130 bits (330), Expect = 8e-39
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 13/99 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
V V+P L GKL G+A R+P K + + ++ASQ MKGI Y
Sbjct: 219 VALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKY 278
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
+ +VS+DF G + SSI D+ + + + K+++WYD
Sbjct: 279 SDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYD 317
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis,
oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A
{Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O*
1vc2_A*
Length = 331
Score = 129 bits (328), Expect = 1e-38
Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 14/99 (14%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
VLPSL G+ GMA R+P ++ T +++ AA K A++G +KGI Y
Sbjct: 213 TALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAY 272
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
ED++V D V D SSI DAK +L N K+ +WYD
Sbjct: 273 TEDEIVLQDIVMDPHSSIVDAKLTKAL-GNMVKVFAWYD 310
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 332
Score = 125 bits (317), Expect = 5e-37
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 13/99 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
V V+P + GKL GMA R+P K+ T +++ A KEA++G +KGI GY
Sbjct: 215 VALVVPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGY 274
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
++ +VS+D +G S IFDA + K+ SWYD
Sbjct: 275 NDEPIVSSDIIGTTFSGIFDATITNVIGGKLVKVASWYD 313
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
oxidoreductase, glycolysis, rossmann fold; HET: NAD;
1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O*
3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q*
3ksz_O*
Length = 338
Score = 121 bits (305), Expect = 4e-35
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 21/103 (20%)
Query: 1 VGKVLPSLNGKLTGMAFRLP--------------PKKATYDDIKAAHKEASQGEMKGIFG 46
+GKV+P ++GKL G A R+P + T + + A K AS FG
Sbjct: 219 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FG 274
Query: 47 YIEDDVVSTDFVGDNRSSIFDAKAGISLS---DNFEKLVSWYD 86
Y ED++VS+D VG S+FDA +S K+ +WYD
Sbjct: 275 YTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYD 317
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 119 bits (302), Expect = 9e-35
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 22/107 (20%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-P-------------KKATYDDIKAAHKEASQG------- 39
+G+V+P L GKL G A R+P P ++ +++ +EA+Q
Sbjct: 216 IGEVIPELKGKLDGTARRVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKV 275
Query: 40 EMKGIFGYIEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
+K I Y ED +VSTD VG+ S+IFDA + DN + +WYD
Sbjct: 276 YLKEILQYCEDPIVSTDIVGNPHSAIFDAPLTQ-VIDNLVHIAAWYD 321
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural
genomics, PSI, protein structure initiative; HET: NAD;
2.40A {Brucella melitensis biovar ABORTUS2308} PDB:
3l0d_A*
Length = 335
Score = 115 bits (291), Expect = 4e-33
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 13/99 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
VG VLP L GKL G+A R+P ++ T +++ A +EA+ G +KGI GY
Sbjct: 217 VGLVLPELKGKLDGVAIRVPTPNVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGY 276
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
++ +VS DF D+ SS+F + +++SWYD
Sbjct: 277 TDEKLVSHDFNHDSHSSVFHTDQTKVMDGTMVRILSWYD 315
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase,
hydride transfer, aldehyde dehydrogenase, PY
biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A*
2x5k_O*
Length = 339
Score = 108 bits (273), Expect = 2e-30
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
+ + P N + +A R+P K +++ ++A+QG GI Y
Sbjct: 219 ITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDY 278
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
E +VS DF D S+I D + K + W D
Sbjct: 279 TELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCD 317
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway,
oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A
{Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB:
3gnq_A*
Length = 335
Score = 106 bits (266), Expect = 2e-29
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
VG VLP L+GKL G A R+P + T +++ K AS+GE+KGI Y
Sbjct: 218 VGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDY 277
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
+ +VS D+ D SS DA +S K+ SWYD
Sbjct: 278 NTEPLVSVDYNHDPASSTVDASL-TKVSGRLVKVSSWYD 315
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase,
oxidoreductase; HET: NAP; 2.10A {Methanothermus
fervidus} SCOP: c.2.1.3 d.81.1.1
Length = 337
Score = 92.5 bits (230), Expect = 2e-24
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 17/97 (17%)
Query: 3 KVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGYIE 49
V L+ + MA +P + T DDI ++ + I E
Sbjct: 197 DVKTVLDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTP----RVILISAE 252
Query: 50 DDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
D + ST + + + ++ + + + ++ D
Sbjct: 253 DGLTSTAEIMEYAKELGRSRNDLFEIPVWRESITVVD 289
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde
3-phosphate binding, alpha and beta proteins (A/B)
class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus
jannaschii}
Length = 343
Score = 46.3 bits (110), Expect = 1e-07
Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 21/109 (19%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQ-GEMKGIFG 46
V V+P GK+ A +P + DDI A K+ + ++ G
Sbjct: 202 VVSVVPEFEGKILTSAVIVPTTLMHMHTLMVEVDGDVSRDDILEAIKKTPRIITVRAEDG 261
Query: 47 YIEDDVV---STDFVGDNRSSIFD---AKAGISLSDNFEKLVSWYDSDA 89
+ + D G R I + + I++ +N L+ ++
Sbjct: 262 FSSTAKIIEYGRDL-GRLRYDINELVVWEESINVLENEIFLMQAVHQES 309
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 41.3 bits (97), Expect = 8e-06
Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 21/109 (19%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQG----EMKG 43
V + + MAF +P K T DD+ + ++ + KG
Sbjct: 193 GPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEKG 252
Query: 44 IFGYIEDDVVSTDFVGDNRSSIFD---AKAGISLSDNFEKLVSWYDSDA 89
+ + D +++++ K I++ N + ++
Sbjct: 253 FDSTAQIIEFARDL-HREWNNLYEIAVWKESINIKGNRLFYIQAVHQES 300
>2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A
{Xylella fastidiosa}
Length = 207
Score = 29.1 bits (66), Expect = 0.14
Identities = 10/87 (11%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 10 GKLTGMAFRLPPKKATYDDIKAAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFDA- 68
+ F + A ++ ++ +++ ++ + + +++ + + S DA
Sbjct: 105 HPMYWALFG-GTAYLQDPQMIARSQDNARQKLRVLYQRADAHLKHHNWLANGQRSGADAY 163
Query: 69 ---------KAGISLSDNFEKLVSWYD 86
K G+ LS + L ++++
Sbjct: 164 LYVTLRWAKKVGVDLSS-LDALSAFFE 189
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 28.4 bits (63), Expect = 0.33
Identities = 4/34 (11%), Positives = 10/34 (29%)
Query: 17 FRLPPKKATYDDIKAAHKEASQGEMKGIFGYIED 50
F +A D ++ E++ +
Sbjct: 48 FHGAVMRALDDMDHEGRDTLAREELRQGLSELPA 81
>1pmt_A PMGST, GST B1-1, glutathione transferase; glutathione-conjugating,
A putative oxidoreduct; HET: GSH; 2.50A {Proteus
mirabilis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pmt_A*
Length = 203
Score = 26.4 bits (59), Expect = 1.3
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 11/66 (16%)
Query: 31 AAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFDA----------KAGISLSDNFEK 80
++ + ++K F YI D + V + ++ DA + L+D
Sbjct: 119 ESYLPVVKNKLKSKFVYINDVLSKQKCVCGDHFTVADAYLFTLSQWAPHVALDLTD-LSH 177
Query: 81 LVSWYD 86
L +
Sbjct: 178 LQDYLA 183
>1n2a_A Glutathione S-transferase; HET: GTS; 1.90A {Escherichia coli} SCOP:
a.45.1.1 c.47.1.5 PDB: 1a0f_A*
Length = 201
Score = 26.4 bits (59), Expect = 1.4
Identities = 8/66 (12%), Positives = 24/66 (36%), Gaps = 11/66 (16%)
Query: 31 AAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFDA----------KAGISLSDNFEK 80
+K + +++ Y+ + + ++ R +I DA ++L E
Sbjct: 119 EEYKPTVRAQLEKKLQYVNEALKDEHWICGQRFTIADAYLFTVLRWAYAVKLNLEG-LEH 177
Query: 81 LVSWYD 86
+ ++
Sbjct: 178 IAAFMQ 183
>4g9h_A Glutathione S-transferase; GST, enzyme function initiative,
structural genomics; HET: GSH; 2.10A {Yersinia pestis}
Length = 211
Score = 25.6 bits (57), Expect = 2.5
Identities = 8/66 (12%), Positives = 22/66 (33%), Gaps = 11/66 (16%)
Query: 31 AAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFDA----------KAGISLSDNFEK 80
+K + + F Y++ + D++ + S+ DA + + +
Sbjct: 122 DEYKTIVRERLDKQFSYVDSVLAEHDYLLGKKFSVADAYLFTVSRWANALNLQIKE-RSH 180
Query: 81 LVSWYD 86
L +
Sbjct: 181 LDQYMA 186
>2dsa_A Glutathione S-transferase; HET: GSH HPX; 2.10A {Burkholderia
xenovorans} PDB: 2gdr_A*
Length = 203
Score = 25.3 bits (56), Expect = 3.5
Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 11/66 (16%)
Query: 31 AAHKEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFDA----------KAGISLSDNFEK 80
K A + + G + + ++ ++ S+ D I LS +
Sbjct: 119 DEWKNAVRQSLNTRLGQVARQLEHAPYLLGDQLSVADIYLFVVLGWSAYVNIDLSP-WPS 177
Query: 81 LVSWYD 86
L ++
Sbjct: 178 LQAFQG 183
>1f2e_A Glutathione S-transferase; GST complexed with glutathione,
thioredoxin superfamily fold transferase; HET: GSH;
2.30A {Sphingomonas paucimobilis} SCOP: a.45.1.1
c.47.1.5
Length = 201
Score = 24.5 bits (54), Expect = 5.1
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 11/63 (17%)
Query: 34 KEASQGEMKGIFGYIEDDVVSTDFVGDNRSSIFDA----------KAGISLSDNFEKLVS 83
K A+ +K ++ ++ D N S+ D GI ++ + L +
Sbjct: 122 KAAAAESVKNHLAALDKELAGRDHYAGNAFSVADIYLYVMLGWPAYVGIDMAA-YPALGA 180
Query: 84 WYD 86
+
Sbjct: 181 YAG 183
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural
genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens}
PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A*
2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Length = 421
Score = 24.7 bits (54), Expect = 5.2
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 18 RLPPKKATYDDIKAAHKEA 36
L +KA+ +++++ H E
Sbjct: 84 CLRGRKASLEELQSVHSER 102
>2yb5_A FUSC, putative fusidic acid resistance protein; translation,
antibiotic resistance, zinc finger; 2.10A
{Staphylococcus aureus}
Length = 215
Score = 24.2 bits (52), Expect = 7.5
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 4 VLPSLNGKLTGMAFRLPPKK 23
V +L+ K G+ + P K
Sbjct: 134 VYKNLDDKFEGIYGEISPNK 153
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A
{Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A*
2vcg_A*
Length = 369
Score = 24.2 bits (53), Expect = 8.0
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 18 RLPPKKATYDDIKAAHKEA 36
+ AT DI AH A
Sbjct: 61 PIAAVAATDADILRAHSAA 79
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold,
deacetylase, hydrolase-HYDR inhibitor complex; HET:
B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A*
3q9e_A*
Length = 341
Score = 23.9 bits (52), Expect = 10.0
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 11 KLTGMAFRLPPKKATYDDIKAAHKEA 36
K G + P + + + H
Sbjct: 41 KEAGFDDVVAPARHGLETVLKVHDAG 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.381
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,462,048
Number of extensions: 75707
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 39
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)