RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 047709
(93 letters)
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 163
Score = 127 bits (320), Expect = 8e-40
Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 13/99 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
V VLP L GKL GMA R+P K+ T +++ AA K A++GE+KGI Y
Sbjct: 65 VALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAY 124
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
E+ +VS D+ G SS DA + + + K+VSWYD
Sbjct: 125 SEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYD 163
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 164
Score = 123 bits (310), Expect = 3e-38
Identities = 57/99 (57%), Positives = 67/99 (67%), Gaps = 13/99 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VGKV+P LNGKLTGMAFR+P K A YDDIK K+AS+G +KGI GY
Sbjct: 66 VGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGY 125
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
E VVS+DF D SS FDA AGI+L+D+F KL+SWYD
Sbjct: 126 TEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYD 164
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 162
Score = 121 bits (306), Expect = 8e-38
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 14/98 (14%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VG VLP L+GKL G A R+P + T +++ K AS+GE+KGI Y
Sbjct: 66 VGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDY 125
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWY 85
+ +VS D+ D SS DA +S K+ SWY
Sbjct: 126 NTEPLVSVDYNHDPASSTVDASL-TKVSGRLVKVSSWY 162
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 163
Score = 116 bits (292), Expect = 1e-35
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 13/99 (13%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
V VLP+L GKL G+A R+P KK +++ AA +E++ E+KGI
Sbjct: 65 VALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSV 124
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
++ +VS DF + SS D+ + + D+ K+++WYD
Sbjct: 125 CDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYD 163
>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 162
Score = 102 bits (256), Expect = 4e-30
Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 14/99 (14%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
VLPSL G+ GMA R+P ++ T +++ AA K A++G +KGI Y
Sbjct: 65 TALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAY 124
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYD 86
ED++V D V D SSI DAK +L N K+ +WYD
Sbjct: 125 TEDEIVLQDIVMDPHSSIVDAKLTKAL-GNMVKVFAWYD 162
>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 169
Score = 94.8 bits (235), Expect = 6e-27
Identities = 45/102 (44%), Positives = 61/102 (59%), Gaps = 17/102 (16%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGIFGY 47
VG V+PS GKLTGM+FR+P + + +I AA K AS+ MKGI GY
Sbjct: 68 VGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGY 127
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISL----SDNFEKLVSWY 85
++++VS DF+ DNRSSI+D+KA + F K+VSWY
Sbjct: 128 TDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWY 169
>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 162
Score = 34.9 bits (80), Expect = 5e-04
Identities = 14/100 (14%), Positives = 25/100 (25%), Gaps = 25/100 (25%)
Query: 1 VGKVLPSLNGKLTGMAFRLPP-------------KKATYDDIKAAHKEASQGEMKGIFGY 47
V V+ +L + MA P K DI + + + +
Sbjct: 59 VNSVIRNL--DIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIVLIS---- 112
Query: 48 IEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDS 87
D +D E ++ + DS
Sbjct: 113 -----SKYDAEATAELVEVARDLKRDRNDIPEVMI-FSDS 146
>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 165
Score = 33.3 bits (76), Expect = 0.001
Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 29/103 (28%)
Query: 1 VGKVLPSLNGKLTGMAFRLP-------------PKKATYDDIKAAHKEASQGEMKGI--- 44
V L+ + MA +P + T DDI ++ + +
Sbjct: 57 GPDVKTVLDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPRVILISAEDG 116
Query: 45 FGYIEDDVVSTDFVGDNRSSIFDAKAGISLSDNFEKLVSWYDS 87
+ + +G +R+ +F ++ W +S
Sbjct: 117 LTSTAEIMEYAKELGRSRNDLF-------------EIPVWRES 146
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 364
Score = 25.1 bits (54), Expect = 1.5
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 18 RLPPKKATYDDIKAAHKEA 36
+ PK A+ +++ H +A
Sbjct: 43 IVKPKVASMEEMATFHTDA 61
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 24.8 bits (53), Expect = 2.1
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 18 RLPPKKATYDDIKAAHKEA 36
+ + AT +++ H E
Sbjct: 45 LIKSRPATKEELLLFHTED 63
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 24.5 bits (52), Expect = 2.8
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 18 RLPPKKATYDDIKAAHKEA 36
L +KA+ +++++ H E
Sbjct: 52 CLRGRKASLEELQSVHSER 70
>d1yq2a2 b.1.4.1 (A:220-312) beta-Galactosidase, domains 2 and 4
{Arthrobacter sp. c2-2 [TaxId: 192168]}
Length = 93
Score = 22.3 bits (47), Expect = 8.0
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 46 GYIEDDVVSTDFVGDNRSSIFDAKAGIS 73
G I D + T + + + I+
Sbjct: 1 GGITDAWLRTGWSARSGAGTGTIDPEIT 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.381
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 348,805
Number of extensions: 13626
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 12
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)