BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047710
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 88/156 (56%), Positives = 109/156 (69%), Gaps = 6/156 (3%)
Query: 15 LPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFF 74
LPPGFRF+PTDEEL+ YL +K +F+ + IAE+DL K +PW LP KA GEKEWYFF
Sbjct: 17 LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFF 76
Query: 75 SLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSN 134
S RDRKYP G R NR +GYWKATG D+ I S VG+KK LVFY G+APKG K+N
Sbjct: 77 SPRDRKYPNGSRPNRVAGSGYWKATGTDKII--STEGQRVGIKKALVFYIGKAPKGTKTN 134
Query: 135 WVMHEYRLEGKFAYQYLSRSSK-DEWVISRVFQKSS 169
W+MHEYRL + S+K D+WV+ R+++K S
Sbjct: 135 WIMHEYRL---IEPSRRNGSTKLDDWVLCRIYKKQS 167
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 110/160 (68%), Gaps = 6/160 (3%)
Query: 11 SDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKE 70
+ LPPGFRF+PTDEEL+ YL +K +F+ + IAE+DL K +PW LP KA GEKE
Sbjct: 16 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE 75
Query: 71 WYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKG 130
WYFFS RDRKYP G R NR +GYWKATG D+ I S VG+KK LVFY G+APKG
Sbjct: 76 WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII--STEGQRVGIKKALVFYIGKAPKG 133
Query: 131 EKSNWVMHEYRLEGKFAYQYLSRSSK-DEWVISRVFQKSS 169
K+NW+MHEYRL + S+K D+WV+ R+++K S
Sbjct: 134 TKTNWIMHEYRL---IEPSRRNGSTKLDDWVLCRIYKKQS 170
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 106/162 (65%), Gaps = 5/162 (3%)
Query: 11 SDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKE 70
++ +LPPGFRFHPTD+EL+ +YL +K IAEVDL K +PW+LP +A G +E
Sbjct: 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGARE 70
Query: 71 WYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKG 130
WYFF+ RDRKYP G R NRA GYWKATG D+ + + +G+KK LVFY G+AP+G
Sbjct: 71 WYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPV--APRGRTLGIKKALVFYAGKAPRG 128
Query: 131 EKSNWVMHEYRLEGKFAYQYLSRSSK---DEWVISRVFQKSS 169
K++W+MHEYRL ++ D+WV+ R++ K +
Sbjct: 129 VKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170
>pdb|1KXJ|A Chain A, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
pdb|1KXJ|B Chain B, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
Length = 205
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 18 GFRFHPTDEELITYYLLKKVLDCNFTGRA 46
GF+FHP I LL+KV++C+ + R
Sbjct: 176 GFQFHPEKSSKIGRKLLEKVIECSLSRRG 204
>pdb|1GPW|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1K9V|F Chain F, Structural Evidence For Ammonia Tunelling Across The
(Beta- Alpha)8-Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
Length = 201
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 18 GFRFHPTDEELITYYLLKKVLDCNFTGR 45
GF+FHP I LL+KV++C+ + R
Sbjct: 174 GFQFHPEKSSKIGRKLLEKVIECSLSRR 201
>pdb|2WJZ|B Chain B, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|D Chain D, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|F Chain F, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
Length = 201
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 18 GFRFHPTDEELITYYLLKKVLDCNFTGR 45
GF+FHP I LL+KV++C+ + R
Sbjct: 174 GFQFHPEASSKIGRKLLEKVIECSLSRR 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,781,118
Number of Sequences: 62578
Number of extensions: 303052
Number of successful extensions: 564
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 9
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)