Query 047710
Match_columns 384
No_of_seqs 224 out of 984
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 00:44:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 4.1E-57 1.4E-61 410.8 15.0 159 10-170 10-171 (174)
2 1ut7_A No apical meristem prot 100.0 7.7E-57 2.6E-61 407.9 14.3 158 10-171 12-169 (171)
3 1cmb_A Met APO-repressor; DNA- 24.9 54 0.0019 26.8 3.2 40 22-65 50-89 (104)
4 1ldd_A APC2WHB, anaphase promo 16.4 63 0.0022 25.1 1.9 27 15-42 36-63 (74)
5 2c4b_A Barnase mcoeeti fusion; 12.6 1.7E+02 0.0058 25.5 3.7 62 24-99 4-73 (143)
6 3nr5_A MAF1, repressor of RNA 12.6 41 0.0014 30.0 -0.2 13 47-59 119-131 (164)
7 1r8u_A CBP/P300-interacting tr 12.4 77 0.0026 22.9 1.2 17 368-384 24-40 (50)
8 2crr_A Stromal membrane-associ 11.1 1.7E+02 0.0059 25.1 3.3 32 13-45 99-130 (141)
9 2k2v_A ALR1010 protein, CCBP; 10.6 60 0.002 27.9 0.1 10 320-329 36-45 (126)
10 1na6_A Ecorii, restriction end 10.4 4.2E+02 0.014 26.8 6.2 43 117-164 79-123 (404)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=4.1e-57 Score=410.81 Aligned_cols=159 Identities=48% Similarity=0.950 Sum_probs=137.0
Q ss_pred CCCCCCCCCeeECCChHHHHHHHHHhhhcCCCCCCCceeeccCCCCCCCCCCccccCCCeeEEEeccCCccCCCCCCccc
Q 047710 10 NSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGLRTNR 89 (384)
Q Consensus 10 ~~~~~LPPGFRF~PTDEELI~~YL~~Kv~g~pl~~~~I~evDVY~~ePWdLP~~~~~gekeWYFFs~r~rKy~~G~R~nR 89 (384)
..++.|||||||||||||||.|||++|+.+.+++..+|+|+|||++|||+||+.+..++++||||+++++||++|.|++|
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence 35679999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred ccCCceEeecCCceeeeeCCCceeeeeEEEEEeeecCCCCCCccCeEEEEEEeCCccccc---cccCCCCCceEEEEEEE
Q 047710 90 ATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYQ---YLSRSSKDEWVISRVFQ 166 (384)
Q Consensus 90 at~gGyWKatGkdk~I~~~~~G~vVG~KKtLvFY~Grapkg~KT~WvMhEYrL~~~~~~~---~~~~~~~dewVLCRVf~ 166 (384)
+|++||||++|+++.|... |.+||+||+|+||+|++|++.||+|+||||+|.+..... .......++|||||||+
T Consensus 90 ~t~~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~ 167 (174)
T 3ulx_A 90 AAGNGYWKATGADKPVAPR--GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167 (174)
T ss_dssp EETTEEEEECSCCEEECCS--SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred ecCCceEccCCCCcEEeeC--CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence 9999999999999999864 789999999999999999999999999999998763211 00112468999999999
Q ss_pred ccCc
Q 047710 167 KSSG 170 (384)
Q Consensus 167 Ks~~ 170 (384)
|++.
T Consensus 168 K~~~ 171 (174)
T 3ulx_A 168 KKNE 171 (174)
T ss_dssp SCC-
T ss_pred cCCC
Confidence 9864
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=7.7e-57 Score=407.86 Aligned_cols=158 Identities=54% Similarity=0.981 Sum_probs=133.5
Q ss_pred CCCCCCCCCeeECCChHHHHHHHHHhhhcCCCCCCCceeeccCCCCCCCCCCccccCCCeeEEEeccCCccCCCCCCccc
Q 047710 10 NSDAHLPPGFRFHPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGLRTNR 89 (384)
Q Consensus 10 ~~~~~LPPGFRF~PTDEELI~~YL~~Kv~g~pl~~~~I~evDVY~~ePWdLP~~~~~gekeWYFFs~r~rKy~~G~R~nR 89 (384)
..+..|||||||||||||||.|||++|+.+.+++..+|+|+|||++|||+||+.++.++++||||+++++||++|.|++|
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R 91 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNR 91 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCE
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccc
Confidence 34679999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred ccCCceEeecCCceeeeeCCCceeeeeEEEEEeeecCCCCCCccCeEEEEEEeCCccccccccCCCCCceEEEEEEEccC
Q 047710 90 ATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVISRVFQKSS 169 (384)
Q Consensus 90 at~gGyWKatGkdk~I~~~~~G~vVG~KKtLvFY~Grapkg~KT~WvMhEYrL~~~~~~~~~~~~~~dewVLCRVf~Ks~ 169 (384)
+|++||||++|+++.|... +.+||+||+|+||+|++|++.||+|+||||+|..... ......+++|||||||+|+.
T Consensus 92 ~t~~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~--~~~~~~~~~~VlCrv~~k~~ 167 (171)
T 1ut7_A 92 VAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR--RNGSTKLDDWVLCRIYKKQS 167 (171)
T ss_dssp EETTEEEEEEEEEEEEEET--TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------CCEEEEEEEECC-
T ss_pred cCCCCEEeccCCCceEEec--CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc--ccCcccCCCEEEEEEEEcCC
Confidence 9999999999999999974 6999999999999999999999999999999987631 11123468999999999986
Q ss_pred cc
Q 047710 170 GA 171 (384)
Q Consensus 170 ~~ 171 (384)
..
T Consensus 168 ~~ 169 (171)
T 1ut7_A 168 SA 169 (171)
T ss_dssp --
T ss_pred CC
Confidence 53
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=24.86 E-value=54 Score=26.77 Aligned_cols=40 Identities=30% Similarity=0.393 Sum_probs=34.2
Q ss_pred CCChHHHHHHHHHhhhcCCCCCCCceeeccCCCCCCCCCCcccc
Q 047710 22 HPTDEELITYYLLKKVLDCNFTGRAIAEVDLNKCEPWELPAKAK 65 (384)
Q Consensus 22 ~PTDEELI~~YL~~Kv~g~pl~~~~I~evDVY~~ePWdLP~~~~ 65 (384)
|-|..||+|.-.+.-..|.|+|. +.||-+..|.++|..++
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~ak 89 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAAK 89 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHHH
Confidence 67888999987788889999987 67999999999997753
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=16.38 E-value=63 Score=25.11 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=22.1
Q ss_pred CCCCeeECC-ChHHHHHHHHHhhhcCCCC
Q 047710 15 LPPGFRFHP-TDEELITYYLLKKVLDCNF 42 (384)
Q Consensus 15 LPPGFRF~P-TDEELI~~YL~~Kv~g~pl 42 (384)
.|.|+.|.. |++||-. ||.+|+..+.+
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 367899998 8888887 79999987754
No 5
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=12.61 E-value=1.7e+02 Score=25.53 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHhhhcCCCCCCCceeec--cCCCCCCCC------CCccccCCCeeEEEeccCCccCCCCCCcccccCCce
Q 047710 24 TDEELITYYLLKKVLDCNFTGRAIAEV--DLNKCEPWE------LPAKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGY 95 (384)
Q Consensus 24 TDEELI~~YL~~Kv~g~pl~~~~I~ev--DVY~~ePWd------LP~~~~~gekeWYFFs~r~rKy~~G~R~nRat~gGy 95 (384)
|+++-|..||.. ...+|...|... +--.=+|-+ +|++...|+- |..+.+.-|. ..+||
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~kgnL~~v~pgk~igG~v----F~NrE~~LP~-------~~~~~ 69 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGDI----FSNREGKLPG-------KSGRT 69 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGGTCHHHHSTTCEEEEEE----ECCTTCCSCC-------CTTCC
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCcCcHhhcCCCcccCCce----EecCCCcCCC-------CCCCE
Confidence 455666678876 356777777443 333445533 4555443322 5555444343 23678
Q ss_pred Eeec
Q 047710 96 WKAT 99 (384)
Q Consensus 96 WKat 99 (384)
|+..
T Consensus 70 y~E~ 73 (143)
T 2c4b_A 70 WREA 73 (143)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8654
No 6
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=12.58 E-value=41 Score=30.02 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=10.9
Q ss_pred eeeccCCCCCCCC
Q 047710 47 IAEVDLNKCEPWE 59 (384)
Q Consensus 47 I~evDVY~~ePWd 59 (384)
+.++|||.++|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 6788999999983
No 7
>1r8u_A CBP/P300-interacting transactivator 2; zinc-binding motifs, protein-protein complex, TAZ zinc finger, transcription/transcription activator complex; NMR {Homo sapiens} SCOP: j.96.1.1
Probab=12.35 E-value=77 Score=22.94 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=13.5
Q ss_pred CCccccCCCcccccccC
Q 047710 368 GGRLNVGPTELDCMWTY 384 (384)
Q Consensus 368 ~~~~~~~~~~~~~~~~~ 384 (384)
-+.+-+|+.|+||||.+
T Consensus 24 LPEL~LgqnEfd~~~D~ 40 (50)
T 1r8u_A 24 LPELWLGQNEFDFMTDF 40 (50)
T ss_dssp CCCCCTTSGGGCTTCCS
T ss_pred hHHHHhccchHHHHHhh
Confidence 35667899999999964
No 8
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=11.15 E-value=1.7e+02 Score=25.06 Aligned_cols=32 Identities=22% Similarity=0.587 Sum_probs=24.1
Q ss_pred CCCCCCeeECCChHHHHHHHHHhhhcCCCCCCC
Q 047710 13 AHLPPGFRFHPTDEELITYYLLKKVLDCNFTGR 45 (384)
Q Consensus 13 ~~LPPGFRF~PTDEELI~~YL~~Kv~g~pl~~~ 45 (384)
..||++++ .|+.++.+..|++.|-....+...
T Consensus 99 ~~lp~~~~-~P~~~~~~e~fIr~KY~~k~f~~~ 130 (141)
T 2crr_A 99 ANLPENFR-RPQTDQAVEFFIRDKYEKKKYYDK 130 (141)
T ss_dssp GSCCTTCC-CCCSHHHHHHHHHHHHTSCTTCCC
T ss_pred hcCCcccC-CCCchHHHHHHHHHHHhcCcccCC
Confidence 46788765 577777888899999887766543
No 9
>2k2v_A ALR1010 protein, CCBP; calcium-binding, calcium-binding protein; NMR {Anabaena SP} PDB: 2p0p_A 2p0q_A
Probab=10.56 E-value=60 Score=27.88 Aligned_cols=10 Identities=40% Similarity=1.065 Sum_probs=9.2
Q ss_pred cccccCccee
Q 047710 320 LQENLQLPFF 329 (384)
Q Consensus 320 ~q~nl~lp~f 329 (384)
|+|+|+|||=
T Consensus 36 Led~L~fPF~ 45 (126)
T 2k2v_A 36 LDDTLEFPFM 45 (126)
T ss_dssp HHHHCCSSEE
T ss_pred HHHhhCCCeE
Confidence 8999999996
No 10
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=10.40 E-value=4.2e+02 Score=26.77 Aligned_cols=43 Identities=9% Similarity=0.097 Sum_probs=27.2
Q ss_pred EEEEEeeecCCCCCCccCeEEEEEEeC--CccccccccCCCCCceEEEEE
Q 047710 117 KKTLVFYRGRAPKGEKSNWVMHEYRLE--GKFAYQYLSRSSKDEWVISRV 164 (384)
Q Consensus 117 KKtLvFY~Grapkg~KT~WvMhEYrL~--~~~~~~~~~~~~~dewVLCRV 164 (384)
.-++.||..|..+++|. ||||. .....-.......+-.||++.
T Consensus 79 d~~~twYn~R~~~~tRn-----EyRLt~~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 79 EARAIYYNSAHFGKTRN-----EKRITRWGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEEEECGGGTTSCCC-----EEEEECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEEEEecccccCCCCC-----ceEEeecCCCCcccccCCCCCEEEEEEe
Confidence 67899999887777777 88887 443211112233455677765
Done!