Query 047712
Match_columns 452
No_of_seqs 249 out of 2217
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 00:46:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.9 4.8E-24 1.6E-28 214.4 7.2 200 115-324 113-344 (367)
2 2d2p_A Pituitary adenylate cyc 19.9 1.1E+02 0.0037 20.6 3.4 32 43-83 2-33 (39)
3 2xw6_A MGS, methylglyoxal synt 9.1 6.8E+02 0.023 21.0 6.4 73 172-251 31-107 (134)
4 1uf5_A N-carbamyl-D-amino acid 8.5 4.2E+02 0.014 24.4 5.4 51 205-256 29-95 (303)
5 1j27_A Hypothetical protein TT 8.4 1.1E+02 0.0037 24.9 0.9 24 16-39 26-54 (102)
6 1jrj_A Exendin-4; Trp-CAGE, GL 7.9 4.5E+02 0.015 17.6 3.6 30 43-81 2-31 (39)
7 2rrh_A VIP peptides; peptide h 7.6 2.1E+02 0.0073 17.8 1.8 17 43-59 2-18 (29)
8 2g49_C Glucagon preproprotein; 6.4 5.1E+02 0.018 16.1 3.1 17 43-59 2-18 (29)
9 1vmd_A MGS, methylglyoxal synt 6.3 9E+02 0.031 21.4 6.0 73 172-251 55-131 (178)
10 2l63_A GLP-2, glucagon-like pe 5.9 3.6E+02 0.012 17.3 2.3 28 43-79 2-29 (33)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.89 E-value=4.8e-24 Score=214.43 Aligned_cols=200 Identities=19% Similarity=0.252 Sum_probs=141.3
Q ss_pred EecchheecccccCCCCCeEEEEECCCCCChHHHHHHHhcCCchhhccccchhhhhhccccccCchHHHHH--HHCCcEE
Q 047712 115 VYGLEKLHDALLHRPKNKSLITVSNHVASVDDPFVIASLLPPSVLLDAQNLRWTLCATDRCFKNPATTAFF--RSVKVLP 192 (452)
Q Consensus 115 V~G~E~l~~~le~lP~~gpvIiVaNH~S~lDD~~ll~~~lp~~~~~~~r~lr~~fvak~~l~~~P~lg~ll--~~~G~Ip 192 (452)
|.|.|++.++.+++|+++++|+++||+|++| +.++..+++........ +..|+|++++..+|+...+- +.++|++
T Consensus 113 V~G~e~~~~~~E~l~~~~~vIfisNHQS~~D-~~vi~~~l~~~~~~l~~--~~~fVAk~eL~~~Pl~~Pfs~g~~l~cI~ 189 (367)
T 1iuq_A 113 VGNLSLFKDIEEKLQQGHNVVLISNHQTEAD-PAIISLLLEKTNPYIAE--NTIFVAGDRVLADPLCKPFSIGRNLICVY 189 (367)
T ss_dssp EECHHHHHHHHHHHHTTCEEEEEECCCCTTH-HHHHHHHHTTTCHHHHH--HCEEEECTHHHHCTTTHHHHHTSEEEECC
T ss_pred eecchhhhhHHhhccCCCcEEEEECCccchh-HHHHHHHHhhccccccc--ceEEEeehhhhcCccccchhhhhheeeEE
Confidence 9999999999999999999999999999995 77777777542211122 23589999999888875531 2334666
Q ss_pred e----e------cCCch-hHHHHHHHHHHHhC-CCeEEEEcCceecCC----CCcccCCCChHHH----HHHHHcCCCC-
Q 047712 193 V----S------RGDGI-YQKGMDMAIAKLNS-GGWVHIFPEGSRSRD----GGKTVGSPKRGVG----RLILDADNVP- 251 (452)
Q Consensus 193 V----~------R~~~~-~~~~l~~a~~~L~~-G~~V~IFPEGtrs~~----~~~~l~~fk~G~~----~LA~~a~~vP- 251 (452)
. + |.+.. ..++++++.+.|++ |.+++|||||||+++ +...+.+|+.|.+ +||.+++ +|
T Consensus 190 ~kk~id~~p~l~r~~~r~n~ksl~~~~~~Lk~GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg-~P~ 268 (367)
T 1iuq_A 190 SKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSD-VPG 268 (367)
T ss_dssp CGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSS-SCE
T ss_pred ecccCCCcchhhhhhhHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcC-CCc
Confidence 4 3 33222 56788899999999 559999999999995 4444677999999 9999999 77
Q ss_pred eEEEEEEEcCCCcccCC---------CCCCcCCCEEEEEECCeecCCCCCchHhhhccCHHHHHHHHHHHHHHHHHHHHH
Q 047712 252 LVVPFVHTGMQDVMPIG---------ATFPRIGKTVTVLIGDPIEFDDLVDEEQTKHLSRGKLYDAVASRIGHQLKKLKL 322 (452)
Q Consensus 252 ~IVPV~i~G~~~~~p~~---------~~~pr~~~~v~V~~GePI~~~~~~~~~~~~~~~~~el~~~v~~~I~~~l~~L~~ 322 (452)
.|||+++. +++++|.. ..+.++ +.|.|.||+||+++++....++ .++..+++.+.+++.|.+...
T Consensus 269 hIvPvaI~-t~~imppp~~ve~~~g~~r~i~~-~~V~v~ig~pI~~~~l~~~~e~----~~e~~~~l~e~v~~~I~~~y~ 342 (367)
T 1iuq_A 269 HLFPLALL-CHDIMPPPSQVEIEIGEKRVIAF-NGAGLSVAPEISFEEIAATHKN----PEEVREAYSKALFDSVAMQYN 342 (367)
T ss_dssp EEEEEEEE-CGGGSCCC----------CCCCC-BCCEEEECCCCCHHHHHHTSSS----HHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEE-eccccCCcccccccccccceeec-ccEEEEECCccchhhccccccc----hHHHHHHHHHHHHHHHHHHHH
Confidence 57999999 57888753 112233 4799999999999875422221 222233444455555444444
Q ss_pred HH
Q 047712 323 QV 324 (452)
Q Consensus 323 e~ 324 (452)
++
T Consensus 343 ~l 344 (367)
T 1iuq_A 343 VL 344 (367)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 2
>2d2p_A Pituitary adenylate cyclase activating polypeptide-38; hormone/growth factor complex; NMR {Homo sapiens} PDB: 2jod_B
Probab=19.87 E-value=1.1e+02 Score=20.61 Aligned_cols=32 Identities=13% Similarity=0.335 Sum_probs=23.0
Q ss_pred CCCCcchhHHHHHHHHHhhhccCCCchhHHHHHHhhhhhhh
Q 047712 43 QNGSFSSTVERWLRLFRDFRRDSLPSTSTFYRKRVTKDLNA 83 (452)
Q Consensus 43 ~~~~~~~~~~~~~~~~r~~~~~~l~s~~~f~~~~~~~~~~~ 83 (452)
+||-|++......++.+ .-.|+.+++.+.+..
T Consensus 2 sdg~FTs~yskyl~~~~---------ak~fl~~l~~kr~~~ 33 (39)
T 2d2p_A 2 SDGIFTDSYSRYRKQMA---------VKKYLAAVLGKRYKQ 33 (39)
T ss_dssp CTTTHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHH---------HHHHHHHHhcCcccc
Confidence 68888888888888776 456777777665543
No 3
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=9.12 E-value=6.8e+02 Score=21.01 Aligned_cols=73 Identities=15% Similarity=0.047 Sum_probs=43.2
Q ss_pred ccccccCchHHHHHHHCCcEEeecCCchhHHHHHHHHHHHhCCC--eEEEEcC--ceecCCCCcccCCCChHHHHHHHHc
Q 047712 172 TDRCFKNPATTAFFRSVKVLPVSRGDGIYQKGMDMAIAKLNSGG--WVHIFPE--GSRSRDGGKTVGSPKRGVGRLILDA 247 (452)
Q Consensus 172 k~~l~~~P~lg~ll~~~G~IpV~R~~~~~~~~l~~a~~~L~~G~--~V~IFPE--Gtrs~~~~~~l~~fk~G~~~LA~~a 247 (452)
.-.++...--+.+++...+++|.+-.+.....-..+.+.+++|+ .|+.||+ |..... +--.-.-+.|...
T Consensus 31 Gf~l~AT~gTa~~L~e~~Gl~v~~v~k~~~eG~p~I~d~I~~geIdlVInt~~pl~~~~h~------~D~~~IrR~A~~~ 104 (134)
T 2xw6_A 31 RFPLVATGTTGRRIEEATGLTVEKLLSGPLGGDQQMGARVAEGRILAVIFFRDPLTAQPHE------PDVQALLRVCDVH 104 (134)
T ss_dssp TSCEEECHHHHHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTCEEEEEEECCTTTCCTTS------CCSHHHHHHHHHH
T ss_pred CCEEEEccHHHHHHHHhhCceEEEEEecCCCCcchHHHHHHCCCccEEEEccCcccCCCcc------chHHHHHHHHHHc
Confidence 34455555666777663346666533221123346899999998 4555787 633211 2244567888888
Q ss_pred CCCC
Q 047712 248 DNVP 251 (452)
Q Consensus 248 ~~vP 251 (452)
+ +|
T Consensus 105 ~-IP 107 (134)
T 2xw6_A 105 G-VP 107 (134)
T ss_dssp T-CC
T ss_pred C-CC
Confidence 8 66
No 4
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=8.52 E-value=4.2e+02 Score=24.44 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=29.7
Q ss_pred HHHHHHHhCCCeEEEEcCceecCCC-Cc---------c------cCCCChHHHHHHHHcCCCCeEEEE
Q 047712 205 DMAIAKLNSGGWVHIFPEGSRSRDG-GK---------T------VGSPKRGVGRLILDADNVPLVVPF 256 (452)
Q Consensus 205 ~~a~~~L~~G~~V~IFPEGtrs~~~-~~---------~------l~~fk~G~~~LA~~a~~vP~IVPV 256 (452)
+.+.++.++|-.|++|||-..+... .. . ..+...-+..+|.+.+ +.+|+.+
T Consensus 29 ~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~-~~iv~G~ 95 (303)
T 1uf5_A 29 DMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFEKAAELG-IGFNLGY 95 (303)
T ss_dssp HHHHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHHHHHHHHT-CEEEEEE
T ss_pred HHHHHHHhcCCCEEEeccccccCCCccccccchhhhHHHHhhcCCCHHHHHHHHHHHHhC-eEEEEee
Confidence 3344555678899999996553211 00 0 1233445677888888 6644444
No 5
>1j27_A Hypothetical protein TT1725; structural genomics, hypothetical protein from thermus therm HB8, MAD; 1.70A {Thermus thermophilus} SCOP: d.58.50.1
Probab=8.35 E-value=1.1e+02 Score=24.87 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=19.5
Q ss_pred HHHhhHhhhcceeee---cccc--cCCCc
Q 047712 16 ARALQLQLRDRFRVA---VDKH--RRRPA 39 (452)
Q Consensus 16 ~~~~~~~~~~~~~~~---~~~~--~~~~~ 39 (452)
.|++-.++|+||-|+ ||.+ |+|..
T Consensus 26 vksl~~rlr~rFnVSvAEv~~qD~~q~a~ 54 (102)
T 1j27_A 26 IKPALERLKARFPVSAARLYGLDAWGYEV 54 (102)
T ss_dssp HHHHHHHHHHHSSCEEEEEECTTCSSEEE
T ss_pred HHHHHHHHhhcCCeEEEEecCccccceEE
Confidence 567889999999976 7777 88775
No 6
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=7.94 E-value=4.5e+02 Score=17.59 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=21.1
Q ss_pred CCCCcchhHHHHHHHHHhhhccCCCchhHHHHHHhhhhh
Q 047712 43 QNGSFSSTVERWLRLFRDFRRDSLPSTSTFYRKRVTKDL 81 (452)
Q Consensus 43 ~~~~~~~~~~~~~~~~r~~~~~~l~s~~~f~~~~~~~~~ 81 (452)
|||-|.|.+...++..+ .-.|..|++....
T Consensus 2 sdGtFTsdyS~~l~~~a---------ak~fv~wL~~~k~ 31 (39)
T 1jrj_A 2 GEGTFTSDLSKQMEEEA---------VRLFIEWLKNGGP 31 (39)
T ss_dssp CCCTTHHHHHHHHHHHH---------HHHHHHHHHTTGG
T ss_pred CCccchHHHHHHHHHHH---------HHHHHHHHHcCCC
Confidence 68888888888887666 3457777776543
No 7
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=7.59 E-value=2.1e+02 Score=17.76 Aligned_cols=17 Identities=12% Similarity=0.278 Sum_probs=10.3
Q ss_pred CCCCcchhHHHHHHHHH
Q 047712 43 QNGSFSSTVERWLRLFR 59 (452)
Q Consensus 43 ~~~~~~~~~~~~~~~~r 59 (452)
+||-|++.+....++.+
T Consensus 2 sdg~FTsdysk~l~~~~ 18 (29)
T 2rrh_A 2 SDAVFTDNYTRLRKQMA 18 (29)
T ss_dssp CTHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHH
Confidence 46666666666666554
No 8
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=6.40 E-value=5.1e+02 Score=16.12 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=11.0
Q ss_pred CCCCcchhHHHHHHHHH
Q 047712 43 QNGSFSSTVERWLRLFR 59 (452)
Q Consensus 43 ~~~~~~~~~~~~~~~~r 59 (452)
|||-|+|.+...+++.+
T Consensus 2 adGtFTsdysk~l~~~a 18 (29)
T 2g49_C 2 SQGTFTSDYSKYLDSRR 18 (29)
T ss_pred CCccchHHHHHHHHHHH
Confidence 57777776666666444
No 9
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=6.27 E-value=9e+02 Score=21.39 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=43.4
Q ss_pred ccccccCchHHHHHHHCCcEEeecCCchhHHHHHHHHHHHhCCC--eEEEEcC--ceecCCCCcccCCCChHHHHHHHHc
Q 047712 172 TDRCFKNPATTAFFRSVKVLPVSRGDGIYQKGMDMAIAKLNSGG--WVHIFPE--GSRSRDGGKTVGSPKRGVGRLILDA 247 (452)
Q Consensus 172 k~~l~~~P~lg~ll~~~G~IpV~R~~~~~~~~l~~a~~~L~~G~--~V~IFPE--Gtrs~~~~~~l~~fk~G~~~LA~~a 247 (452)
.-.++...--+.+++...+++|.+-.+.....-..+.+.+++|. .|+.||+ |..... +--.-+-++|...
T Consensus 55 Gf~L~AT~gTa~~L~e~~Gl~v~~v~k~~eGG~pqI~d~I~~geIdlVInt~dPl~~~~h~------~D~~~IRR~A~~~ 128 (178)
T 1vmd_A 55 KHELYATGTTGALLQEKLGLKVHRLKSGPLGGDQQIGAMIAEGKIDVLIFFWDPLEPQAHD------VDVKALIRIATVY 128 (178)
T ss_dssp TSEEEECHHHHHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTSCCEEEEECCSSSCCTTS------CCHHHHHHHHHHT
T ss_pred CCEEEEchHHHHHHHHHhCceeEEEeecCCCCCchHHHHHHCCCccEEEEccCccCCCccc------ccHHHHHHHHHHc
Confidence 44555566677777773446666533221113346899999998 5566787 622211 2234457889999
Q ss_pred CCCC
Q 047712 248 DNVP 251 (452)
Q Consensus 248 ~~vP 251 (452)
+ +|
T Consensus 129 ~-IP 131 (178)
T 1vmd_A 129 N-IP 131 (178)
T ss_dssp T-CC
T ss_pred C-CC
Confidence 9 66
No 10
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=5.89 E-value=3.6e+02 Score=17.35 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=17.1
Q ss_pred CCCCcchhHHHHHHHHHhhhccCCCchhHHHHHHhhh
Q 047712 43 QNGSFSSTVERWLRLFRDFRRDSLPSTSTFYRKRVTK 79 (452)
Q Consensus 43 ~~~~~~~~~~~~~~~~r~~~~~~l~s~~~f~~~~~~~ 79 (452)
|||-|+|.+...+++.+ .-.|..|++..
T Consensus 2 aDGtFTsd~s~~l~~~a---------ak~fl~wL~~~ 29 (33)
T 2l63_A 2 ADGSFSDEMNTILDNLA---------ARDFINWLIQT 29 (33)
T ss_dssp CCSHHHHGGGHHHHHHH---------HHHHHHHHHTT
T ss_pred CCCcccHHHHHHHHHHH---------HHHHHHHHHcC
Confidence 57777777666666555 33466665543
Done!