RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 047712
(452 letters)
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 128 bits (323), Expect = 6e-35
Identities = 60/184 (32%), Positives = 84/184 (45%), Gaps = 23/184 (12%)
Query: 115 VYGLEKLHDALLHRPKNKSLITVSNHVASVDDPFVIASLLPPSVLLDAQNLRWTLCATDR 174
V GLE L P +I V+NH + +D P V+ + LP +R+
Sbjct: 14 VEGLENL-------PPKGPVIIVANHQSYLD-PLVLGAALPR-------PIRFVAKKEL- 57
Query: 175 CFKNPATTAFFRSVKVLPVSRGDGI-YQKGMDMAIAKLNSGGWVHIFPEGSRSRDGGKTV 233
FK P R + +P+ RG+G ++ + AI L G V IFPEG+RSRDG +
Sbjct: 58 -FKIPFLGWLLRLLGAIPIDRGNGRSAREALREAIEALKEGESVVIFPEGTRSRDG--EL 114
Query: 234 GSPKRGVGRLILDADNVPLVVPFVHTGMQDVMPIGATFPRIGKTVTVLIGDPIEFDDLVD 293
K G RL +A VP +VP +G +P G VTV IG+PI + L
Sbjct: 115 LPFKSGAFRLAKEA-GVP-IVPVAISGTWGSLPKGK-KLPRPGRVTVRIGEPIPPEGLEL 171
Query: 294 EEQT 297
E+
Sbjct: 172 AEED 175
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 89.0 bits (221), Expect = 2e-21
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 12/129 (9%)
Query: 134 LITVSNHVASVDDPFVIASLLPPSVLLDAQNLRWTLCATDRCFKNPATTAFFRSVKVLPV 193
+ V+NH S DP V+++LLP + R A F P R + + +
Sbjct: 1 ALVVANHQ-SFLDPLVLSALLPR------KLGRVRFVAKKELFYVPLLGWLLRLLGAIFI 53
Query: 194 SRGDG-IYQKGMDMAIAKLNSGGWVHIFPEGSRSRDGGKTVGSPKRGVGRLILDADNVPL 252
R +G + + A+ L G W+ IFPEG+RSR G + K+G RL L+A
Sbjct: 54 DRSNGRKARAALREAVELLKEGEWLLIFPEGTRSRPG--KLLPFKKGAARLALEAG--VP 109
Query: 253 VVPFVHTGM 261
+VP G
Sbjct: 110 IVPVAIRGT 118
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 79.6 bits (196), Expect = 7e-17
Identities = 56/181 (30%), Positives = 84/181 (46%), Gaps = 25/181 (13%)
Query: 115 VYGLEKLHDALLHRPKNKSLITVSNHVASVDDPFVIASLLPPSVLLDAQNLRWTLCATDR 174
V GLE L PK + V+NH + +D P +++ LP + + L
Sbjct: 54 VEGLENL-------PKGGPALVVANHQSFLD-PLLLSLALPRRGPV-RFVAKKEL----- 99
Query: 175 CFKNPATTAFFRSVKVLPVSRGDGIYQKGMDMAIAKLNSGG-WVHIFPEGSRSRDGGKTV 233
FK P R + +PV R + + + A+A+L +GG + IFPEG+RSR G + +
Sbjct: 100 -FKVPLLGWLLRLLGAIPVDRENPDDE-TLRAAVARLKAGGRSLVIFPEGTRSRGGEE-L 156
Query: 234 GSPKRGVGRLILDADNVPLVVPFVHTGMQDVMPIGATFPRIGKTVTVLIGDPIEFDDLVD 293
KRG RL L+A VP +VP G +++ P V V IG PI+ L +
Sbjct: 157 LPFKRGAARLALEA-GVP-IVPVAIVGAEELFPSLKKGK-----VKVRIGPPIDISALPE 209
Query: 294 E 294
Sbjct: 210 P 210
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 74.3 bits (183), Expect = 4e-16
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 19/146 (13%)
Query: 115 VYGLEKLHDALLHRPKNKSLITVSNHVASVDDPFVIASLLPPSVLLDAQNLRWTLCATDR 174
V+GLE L P+ I V+NH + +D P +++ LLP A D
Sbjct: 4 VHGLENL-------PRGGPAIVVANHQSYLD-PLLLSLLLPKRGR------PLVFVAKDE 49
Query: 175 CFKNPATTAFFRSVKVLPVSRGD-GIYQKGMDMAIAKLNSGGWVHIFPEGSRSRDGGKTV 233
P R + + + R + ++ + L G V IFPEG+RSR G +
Sbjct: 50 LLNLPLLGWLMRLLGCIFIDRKNAKDAANTLEYLVELLREGELVLIFPEGTRSRGGE--L 107
Query: 234 GSPKRGVGRLILDADNVPLVVPFVHT 259
K+G RL +A VP +VP +
Sbjct: 108 LPFKKGAFRLAREAG-VP-IVPVAIS 131
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 62.7 bits (153), Expect = 2e-11
Identities = 51/200 (25%), Positives = 74/200 (37%), Gaps = 49/200 (24%)
Query: 114 SVYGLEKLHDALLHRPKNKSLITVSNHVASVDDPFVIASLLPPSVLLDAQNLRWTLCATD 173
+V G E + PK+ +I + NH ++ DP ++A+ L V A
Sbjct: 17 TVVGRENV-------PKDGPVIFLGNHPNALIDPLLLAATLRRPV---------RFLAKA 60
Query: 174 RCFKNPATTAFFRSVKVLPVSRGDGIYQKGMDMAIAK-------------LNSGGWVHIF 220
FKNP S +PV R + I K L +GG + IF
Sbjct: 61 DLFKNPLIGWLLESFGAIPVYR----PKDLARGGIGKISNAAVFDAVGEALKAGGAIGIF 116
Query: 221 PEGSRSRDGGKTVGSPKRGVGRLILDADNVPLVVPFVHTGMQDV--MPIGATF---PRIG 275
PEG S D + K G R+ L+A + G +DV +P+G + R
Sbjct: 117 PEGG-SHD-RPRLLPLKAGAARMALEA---------LEAGQKDVKIVPVGLNYEDKSRFR 165
Query: 276 KTVTVLIGDPIEFDDLVDEE 295
V V G PI + E
Sbjct: 166 SRVLVEFGKPISVSAFEEAE 185
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 43.9 bits (104), Expect = 2e-05
Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 14/128 (10%)
Query: 127 HRPKNKSLITVSNHVASVDDPFVIASLLPPSVLLDAQNLRWTLCATDRCFKNPATTAFFR 186
+ P ++ V+NH +++D + A+ PP V + + L+W P
Sbjct: 11 NLPAKSPVLVVANHQSNLDPLTLSAAFPPPIVFIAKKELKWI----------PFFGIMLW 60
Query: 187 SVKVLPVSRGDGIYQKGMDMAIAKLNSGGW-VHIFPEGSRSRDGGKTVGSPKRGVGRLIL 245
+ + R + A ++ G + +FPEG+RSR + K+G + +
Sbjct: 61 LTGAIFIDRENIRAIATALKAAIEVLKQGRSIGVFPEGTRSRGRD--ILPFKKGAFHIAI 118
Query: 246 DADNVPLV 253
A VP++
Sbjct: 119 KA-GVPIL 125
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 45.3 bits (108), Expect = 7e-05
Identities = 45/179 (25%), Positives = 65/179 (36%), Gaps = 36/179 (20%)
Query: 178 NPATTAFFRSVKVLPVSRGDGIYQKGMDMAIAK-LNSGGWVHIFPEGSRSRDGGKTVGSP 236
FF+ V+P+S G K I K L+ G V IFPEG+ +R+G +
Sbjct: 477 KWYLKWFFKLFGVIPISSGG---SKESLEFIRKALDDGEVVCIFPEGAITRNG--QLNEF 531
Query: 237 KRGVGRLILDADNVPLVVPF------------VHTGMQDVMPIGATFPRIGKTVTVLIGD 284
KRG ++ D VP ++PF P +P VTV G
Sbjct: 532 KRGFELIVKGTD-VP-IIPFYIRGLWGSIFSRASGKFLWRWPTRIPYP-----VTVAFGK 584
Query: 285 PIEFDDLVDEEQTKHLSRGKLY----DAVASRIGHQLKKLKLQVDRLALEQPSAERVAD 339
P+ T H + ++ D+ SR + +D A S VAD
Sbjct: 585 PM------PAHSTAHEVKQAVFELSFDSWKSRKEALPPLAEAWIDT-AKRNWSRLAVAD 636
>gnl|CDD|215488 PLN02901, PLN02901, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 214
Score = 40.5 bits (95), Expect = 7e-04
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 22/138 (15%)
Query: 167 WTLCATDRCFKNPATTAFF---------RSVKVLPVSRGDGIYQ-----KGMDMAIAKLN 212
+TL R FK + T+ F +P+ R D Q + M++ L
Sbjct: 65 YTLFHLGRPFKFISKTSIFLIPIIGWAMYMTGHIPLKRMDRRSQLECLKRCMEL----LK 120
Query: 213 SGGWVHIFPEGSRSRDGGKTVGSPKRGVGRLILDADNVPLVVPFVHTGMQDVMPIGATFP 272
G V FPEG+RS+DG + + K+G + VP VVP G +MP G
Sbjct: 121 KGASVFFFPEGTRSKDG--KLAAFKKGAFSVAAKT-GVP-VVPITLVGTGKIMPNGKEGI 176
Query: 273 RIGKTVTVLIGDPIEFDD 290
+V V+I PIE D
Sbjct: 177 LNPGSVKVVIHPPIEGSD 194
>gnl|CDD|153248 cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ACT14924. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Pectobacterium carotovorum subsp. carotovorum PC1 locus
ACT14924 putative acyltransferase, and similar proteins.
Length = 210
Score = 39.9 bits (94), Expect = 0.001
Identities = 45/208 (21%), Positives = 75/208 (36%), Gaps = 47/208 (22%)
Query: 123 DALLHRPKNKSLITVSNHVASVDDPFVIASLLPP----------SVLLDAQNLRWTLCAT 172
L + PK+ ++ V+NH + D ++A LL +L LR
Sbjct: 13 SGLENIPKDGPVVIVANHPFGILDGLILADLLGSVRPDVRILANQLLSKIPELRDLFIPV 72
Query: 173 DRCFKNPATTAFFRSVKVLPVSRGDGIYQKGMDMAIAKLNSGGWVHIFPEG---SRSRDG 229
D L +R + + A+ L +GG + IFP G + S
Sbjct: 73 D----------PLEGRAALAKNR------ESLREALRHLKNGGALIIFPAGRVSTASPPF 116
Query: 230 GKTVGSP-KRGVGRLILDADNVPLVVPF---------------VHTGMQDVMPIGATFPR 273
G+ P V RL A P VVP +H ++ ++ +
Sbjct: 117 GRVSDRPWNPFVARLARKA-KAP-VVPVYFSGRNSRLFYLAGLIHPTLRTLLLPRELLNK 174
Query: 274 IGKTVTVLIGDPIEFDDLVDEEQTKHLS 301
GKT+ + +G PI ++L E + L+
Sbjct: 175 RGKTIRIRVGRPIPPEELARFEDAEELA 202
>gnl|CDD|153249 cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
suubgroup are such LPLATs as 2-acylglycerol
O-acyltransferase (MGAT), and similar proteins.
Length = 212
Score = 34.2 bits (79), Expect = 0.090
Identities = 38/165 (23%), Positives = 55/165 (33%), Gaps = 27/165 (16%)
Query: 115 VYGLEKLHDALLHRPKNKSLITVSNHVASVDDPFVIASLLPPSVLLDAQNLRWTLCATDR 174
V GLE + P + V H D ++A+ LL A
Sbjct: 10 VRGLENI-------PDEGPALLVHPHGGLPIDGALLAAAF----LLLFPGRLPRALADHF 58
Query: 175 CFKNPATTAFFRSVKVLPVSRGDGIYQKGMDMAIAKLNSGGWVHIFPEGSR----SRDGG 230
F P R + +P SR + + L G V IFP G+R S+
Sbjct: 59 LFPLPGLRDLLRRLGAVPGSR---------ENCVRLLREGELVLIFPGGAREALKSKREE 109
Query: 231 KTVGSPKR-GVGRLILDADNVPLVVPFVHTGMQDVMPIGATFPRI 274
+ KR G RL L A P +VP G +++ +
Sbjct: 110 YYLLWKKRKGFARLALRA-GAP-IVPVFTFGEEELFRVLGDPDGP 152
>gnl|CDD|153255 cd07993, LPLAT_DHAPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
subgroup are such LPLATs as dihydroxyacetone phosphate
acyltransferase (DHAPAT, also known as 1
glycerol-3-phosphate O-acyltransferase 1) and similar
proteins.
Length = 205
Score = 33.7 bits (78), Expect = 0.11
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 12/58 (20%)
Query: 219 IFPEGSRSRDGGKTVGSPKRGVGRLILDADNVPLVVPFVHTGMQDVM--PIGATFPRI 274
F EG+RSR GK + PK G+ ++++A ++ + DV+ P+ ++ R+
Sbjct: 106 FFIEGTRSRT-GKLL-PPKLGLLSVVVEA--------YLKGSVPDVLIVPVSISYDRV 153
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 31.6 bits (72), Expect = 0.44
Identities = 42/193 (21%), Positives = 61/193 (31%), Gaps = 35/193 (18%)
Query: 127 HRPKNKSLITVSNHVASVDDPFVIASLL-----PPSVLLDAQNLRWTLCATDRCFKNPAT 181
P ++ VSNH + D + L L+D + L R
Sbjct: 21 PPPGGGPVLFVSNHSSWWDGLILFLLLERGLRRDVYGLMDEELLE-------RY------ 67
Query: 182 TAFFRSVKVLPVSRGDGIYQKG-MDMAIAKL-NSGGWVHIFPEGSRSRDGGKTVGSPKRG 239
FF + V R + L G V IFPEG+R+R K K G
Sbjct: 68 -PFFTRLGAFSVDRDSPRSAAKSLKYVARLLSKPGSVVWIFPEGTRTR-RDKRPLQFKPG 125
Query: 240 VGRLILDADNVPLV--VPFVHTGMQDVMPIGATFPRIGKTVTVLIGDPIEFDDLVDEEQT 297
V L A VP+V + + P + V IG PI + + E+
Sbjct: 126 VAHLAEKAG-VPIVPVALRYTFELFEQFP----------EIFVRIGPPIPYAETALGEEL 174
Query: 298 KHLSRGKLYDAVA 310
+L +
Sbjct: 175 AAELANRLTRLLD 187
>gnl|CDD|222426 pfam13870, DUF4201, Domain of unknown function (DUF4201). This is
a family of coiled-coil proteins from eukaryotes. The
function is not known.
Length = 177
Score = 31.4 bits (72), Expect = 0.59
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 315 HQLKKLKLQVDRLALEQPSAERVADILHQVDRESLGLQNHLLNE 358
H L K++ ++++ E + + LH +D E L ++N LNE
Sbjct: 20 HTLAKIQEKLEQK-------EELGEGLHLIDFEQLQIENQALNE 56
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 30.7 bits (70), Expect = 1.2
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 129 PKNKSLITVSNHVASVDDPFVIASLLPPSVL 159
P I V+NH S DP ++ S L PS++
Sbjct: 21 PPEAPRIIVANHT-SFIDPLILFSDLFPSIV 50
>gnl|CDD|224689 COG1775, HgdB, Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA
dehydratase subunit, BcrC/BadD/HgdB [Amino acid
transport and metabolism].
Length = 379
Score = 30.8 bits (70), Expect = 1.6
Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 276 KTVTVLIGDPIEFDDLVDEEQTKHLSRGKLYDAVASRIGHQLKKLKLQVDRLALEQPSAE 335
+V + +F +L++E ++ KL DA+A ++L++ ++ +LA +PS
Sbjct: 136 PSVKYWHNELDKFKELLEELTGNEITEEKLRDAIA--RYNRLREALAKLYKLAKHKPSPL 193
Query: 336 RVADILHQV 344
+D + +
Sbjct: 194 SGSDAFNVM 202
>gnl|CDD|107208 cd06447, D-Ser-dehyd, D-Serine dehydratase is a pyridoxal phosphate
(PLP)-dependent enzyme which catalyzes the conversion of
L- or D-serine to pyruvate and ammonia. D-serine
dehydratase serves as a detoxifying enzyme in most E.
coli strains where D-serine is a competitive antagonist
of beta-alanine in the biosynthetic pathway to
pentothenate and coenzyme A. D-serine dehydratase is
different from other pyridoxal-5'-phosphate-dependent
enzymes in that it catalyzes alpha, beta-elimination
reactions on amino acids.
Length = 404
Score = 30.4 bits (69), Expect = 1.8
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 292 VDEEQTKHLSRGKLYDAVASRIGHQLKKLKLQVD 325
VD+E ++ L G Y ASR+ QL +L ++VD
Sbjct: 210 VDDENSRDLFLG--YAVAASRLKAQLAELGIKVD 241
>gnl|CDD|218803 pfam05904, DUF863, Plant protein of unknown function (DUF863).
This family consists of a number of hypothetical
proteins from Arabidopsis thaliana and Oryza sativa. The
function of this family is unknown.
Length = 766
Score = 30.8 bits (69), Expect = 1.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 59 RDFRRDSLPSTSTFYRKRVTKDLN 82
RDF++D LP ++ R VT+D+
Sbjct: 661 RDFQKDILPGLASLSRHEVTEDIQ 684
>gnl|CDD|129460 TIGR00363, TIGR00363, lipoprotein, YaeC family. This family of
putative lipoproteins contains a consensus site for
lipoprotein signal sequence cleavage. Included in this
family is the E. coli hypothetical protein yaeC. About
half of the proteins between the noise and trusted
cutoffs contain the consensus lipoprotein signature and
may belong to this family [Cell envelope, Other].
Length = 258
Score = 29.5 bits (66), Expect = 3.5
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 335 ERVADILHQVDRESLGLQNHLLN-EDYSLAQEALVQSKLDISPTQERSFFRMRL------ 387
++VA++ +V +E GL L+ DY+L EA+ + LD + Q + +
Sbjct: 30 QQVAEVAAKVAKEKYGLDVELVEFNDYALPNEAVSKGDLDANAFQHKPYLDQDAKAKGYK 89
Query: 388 --SYGDAFASRMRGY 400
+ G+ F + GY
Sbjct: 90 LVAVGNTFVYPLAGY 104
>gnl|CDD|224118 COG1197, Mfd, Transcription-repair coupling factor (superfamily II
helicase) [DNA replication, recombination, and repair /
Transcription].
Length = 1139
Score = 29.9 bits (68), Expect = 3.6
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 23/57 (40%)
Query: 281 LIGDPIEFDDL----VDEEQTKHLSRGKLYDAVASRIG----HQLKKLKLQVDRLAL 329
L+ ++F DL +DEEQ R G +LK+L+ VD L L
Sbjct: 707 LLSKDVKFKDLGLLIIDEEQ---------------RFGVKHKEKLKELRANVDVLTL 748
>gnl|CDD|218037 pfam04348, LppC, LppC putative lipoprotein. This family includes
several bacterial outer membrane antigens, whose
molecular function is unknown.
Length = 535
Score = 29.8 bits (67), Expect = 3.8
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 17/107 (15%)
Query: 314 GHQLKKLKLQVDRLALEQPSAERVADILHQVDRESLG----LQNHLLNEDYSLA----QE 365
G Q KL R+ +E+ + +L ++ + L L LL + + A +
Sbjct: 20 GEQQNTYKLLAARVLIEENKIAQAQALLRELSVQQLTDEQKLDKSLLEAELAAAKRQNEV 79
Query: 366 ALVQSKL----DISPTQERSFFRMRL----SYGDAF-ASRMRGYMDP 403
AL Q +SP+Q+ ++ R + GDA A++ R MD
Sbjct: 80 ALQQLSHQHLSGLSPSQQSRYYEGRARIAEARGDAIEAAKARIQMDQ 126
>gnl|CDD|234005 TIGR02774, rexB_recomb, ATP-dependent nuclease subunit B. DNA
repair is accomplished by several different systems in
prokaryotes. Recombinational repair of double-stranded
DNA breaks involves the RecBCD pathway in some
lineages, and AddAB (also called RecAB) in other. The
AddA protein is conserved between the firmicutes and
the alphaproteobacteria, while the partner protein is
not. The partner may be designated AddB, as in Bacillus
and in alphaproteobacteria, or RexB as in Streptococcus
and Lactococcus. Note, however, that RexB proteins lack
an N-terminal GxxGxGK[ST] ATP-binding motif found in
Bacillus subtilis and related species, and this
difference may be important; this model represents
specifically RexB proteins as found in Streptococcus
and Lactococcus [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1076
Score = 29.8 bits (67), Expect = 4.3
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 14 NKARALQLQLRDRFRVA-----VDKHRRRPAIFSQNGSFSSTVERWLRLFRDFRRDSLPS 68
N+A + F +A +K R Q SFS TV R+ ++ R F + LP+
Sbjct: 17 NEAEEAAAAGKRVFYIAPNSLSFEKERAVLEYLPQQASFSITVTRFAQMARYFVLNDLPA 76
Query: 69 TST---------FYR 74
+T FYR
Sbjct: 77 KTTLDDIGLAMIFYR 91
>gnl|CDD|240337 PTZ00261, PTZ00261, acyltransferase; Provisional.
Length = 355
Score = 29.1 bits (65), Expect = 5.3
Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 36/197 (18%)
Query: 137 VSNHVASVDDPFVIASLLPPSVLLDAQNLRWTLCATDRCFKNPATTAFFRSVKVLPV--- 193
V NH S D + L P LL N R + ++ R K P F V PV
Sbjct: 134 VGNH-TSFWDVYAFIGLTPFRHLL---NTRTLMKSSLR--KIPIFGGVFDRVGHFPVHFK 187
Query: 194 SRGDG----------IYQKGMDMAIAKLNSGGWVHIFPEGSRSRDGGKTVGSPKRGVGRL 243
S DG Q+ +D A L GG + FPEG+ ++ + + + + G
Sbjct: 188 SDSDGNFEVDKEKQAQVQQAID---AHLRLGGSLAFFPEGAINKH-PQVLQTFRYGTFAT 243
Query: 244 ILDADNVPLVVPFVHTGMQDVMPIGATFPRIGKTVTVLIGD-PIEFDDLVDEEQTKHLSR 302
I+ + V V G + P + + + IG PI++ D + +K ++
Sbjct: 244 II--KHRMEVYYMVSVGSEKTWPWWMMIGGLPADMHIRIGAYPIDY----DRDSSKDVAV 297
Query: 303 G------KLYDAVASRI 313
G K+ D +A+ +
Sbjct: 298 GLQQRMQKVRDEIAAEV 314
>gnl|CDD|219347 pfam07247, AATase, Alcohol acetyltransferase. This family contains
a number of alcohol acetyltransferase (EC:2.3.1.84)
enzymes approximately 500 residues long found in both
bacteria and metazoa. These catalyze the esterification
of isoamyl alcohol by acetyl coenzyme A.
Length = 479
Score = 29.3 bits (66), Expect = 5.3
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 261 MQDVMPIGA---TFPRIGKTVTVLIGDPIEFDDLVDEEQ 296
++ P G V+I + I+ DD+V EQ
Sbjct: 51 ATNIYYTSDEYYNAPFNGHDFIVVILETIKLDDVVKNEQ 89
>gnl|CDD|219414 pfam07452, CHRD, CHRD domain. CHRD (after SWISS-PROT abbreviation
for chordin) is a novel domain identified in chordin, an
inhibitor of bone morphogenetic proteins. This family
includes bacterial homologues. It is anticipated to have
an immunoglobulin-like beta-barrel structure based on
limited similarity to superoxide dismutases but, as yet,
no clear functional prediction can be made. Its most
conserved feature is a GE[I/L]RCG[V/I/L] motif towards
its C-terminal end Most bacterial proteins in this
family have only one CHRD domain, whereas it is found
repeated in many eukaryotic proteins such as human
chordin and Drosophila SOG..
Length = 118
Score = 27.3 bits (61), Expect = 9.0
Identities = 21/92 (22%), Positives = 28/92 (30%), Gaps = 13/92 (14%)
Query: 233 VGSPKRGVGRLILDADNVPLVVPFVHTGMQDVMPIGATF--PRIGKTVTVLIG------- 283
V + G L LD D L +G+ P A GK VL
Sbjct: 16 VTTGASGSAWLTLDDDGNSLHYSVTLSGLSSP-PTAAHIHGAAAGKNGGVLEELTSNGGG 74
Query: 284 ---DPIEFDDLVDEEQTKHLSRGKLYDAVASR 312
E + Q + L G LY V ++
Sbjct: 75 QACGVWEGSADLTPAQLRLLLAGNLYVNVHTK 106
>gnl|CDD|235096 PRK02991, PRK02991, D-serine dehydratase; Provisional.
Length = 441
Score = 28.3 bits (64), Expect = 9.2
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 292 VDEEQTKHLSRGKLYDAVASRIGHQLKKLKLQVD 325
+D+E ++ L G Y R+ QL + + VD
Sbjct: 233 IDDENSRTLFLG--YAVAGLRLKAQLAEQGIVVD 264
>gnl|CDD|107330 cd06335, PBP1_ABC_ligand_binding_like_2, Type I periplasmic
ligand-binding domain of uncharacterized ABC (ATPase
Binding Cassette)-type active transport systems that are
predicted to be involved in transport of amino acids,
peptides, or inorganic ions. This subgroup includes the
type I periplasmic ligand-binding domain of
uncharacterized ABC (ATPase Binding Cassette)-type
active transport systems that are predicted to be
involved in transport of amino acids, peptides, or
inorganic ions. Members of this group are
sequence-similar to members of the family of ABC-type
hydrophobic amino acid transporters, such as
leucine-isoleucine-valine-binding protein (LIVBP);
however their ligand specificity has not been determined
experimentally.
Length = 347
Score = 28.0 bits (63), Expect = 9.8
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 203 GMDMAIAKLNSGGWVHIFPEGSRSRDGGKTVGSPKRGV--GRLILDADNVPLVVPFVHTG 260
G +AI ++N+ G V RD G+P RG+ + + + V V+ +HT
Sbjct: 22 GARLAIDEINAAGGVLGRKLELVERDDR---GNPARGLQNAQELAADEKVVAVLGGLHTP 78
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.409
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,668,376
Number of extensions: 2358382
Number of successful extensions: 2066
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2047
Number of HSP's successfully gapped: 36
Length of query: 452
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 352
Effective length of database: 6,502,202
Effective search space: 2288775104
Effective search space used: 2288775104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.3 bits)