RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 047712
(452 letters)
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four
helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1
PDB: 1k30_A
Length = 367
Score = 57.1 bits (137), Expect = 4e-09
Identities = 43/236 (18%), Positives = 72/236 (30%), Gaps = 32/236 (13%)
Query: 115 VYGLEKLHDALLHRPKNKSLITVSNHVASVDDPFVIASLLPPSVLLDAQNLRWTLCATDR 174
V L D + +++ +SNH + DP +I+ LL + A+N A DR
Sbjct: 113 VGNLSLFKDIEEKLQQGHNVVLISNHQ-TEADPAIISLLLEKTNPYIAENT--IFVAGDR 169
Query: 175 CFKNPATTAFFRSVKVLPV-------------SRGDGIYQKGMDMAIAKLNSGGWV-HIF 220
+P F ++ V + + L G + I
Sbjct: 170 VLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIA 229
Query: 221 PEGSRSRDGGKTVG--------SPKRGVGRLILDADNVPLVVPFVHTGMQDVMPIGATFP 272
P G R R T S + RLI +D + P + P
Sbjct: 230 PSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEI 289
Query: 273 RIGKT-------VTVLIGDPIEFDDLVDEEQTKHLSRGKLYDAVASRIGHQLKKLK 321
IG+ + + I F+++ + R A+ + Q LK
Sbjct: 290 EIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNVLK 345
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 4e-07
Identities = 74/464 (15%), Positives = 138/464 (29%), Gaps = 148/464 (31%)
Query: 22 QLRDRFRVAVDKHRRRPAIFSQNGSFSSTVERWLR-----------------------LF 58
QL+++F + + F+ + ++ E +
Sbjct: 32 QLQEQFNKILPEPTEG---FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 59 RDFRRD------------SLPSTS------------TFYRKRVT--KDLNAEEDCVIHRM 92
+F L + + R+ + + + + +
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN---SAL 145
Query: 93 LQAVAVPVIGNVCHIFM----HGLNSVY--GLEKLHDALLHRPKNKSLITVSNHVASVDD 146
+AV GN + G Y L L+ + LI S A
Sbjct: 146 FRAVG---EGNA-QLVAIFGGQGNTDDYFEELRDLYQT--YHVLVGDLIKFS---AETLS 196
Query: 147 PFVIASLLPPSVL---LDAQNLRWTLCATDRCFKNPATT---AFFRSVKV-LPVSRGDGI 199
+ +L V L+ L W +NP+ T + S+ + P+ G+
Sbjct: 197 ELIRTTLDAEKVFTQGLNI--LEW--------LENPSNTPDKDYLLSIPISCPLI---GV 243
Query: 200 YQKGMDMAIAKLNSGGWVHIFPEGSRSRDGGKTVGSPKRGVGRLILDA------------ 247
Q + AKL G+ P RS G T G + ++ A
Sbjct: 244 IQLAHYVVTAKL--LGFT---PGELRSYLKGAT------GHSQGLVTAVAIAETDSWESF 292
Query: 248 -DNVPLVVPFV-HTGM--QDVMPIGATFPRI-GKTVTVLIGDP--------IEFDDLVDE 294
+V + + G+ + P + P I ++ G P + + + D
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 295 -EQT-KHLSRGK-----LYDA----VASRIGH--QLKKLKLQVDRLA----LEQ---PSA 334
+T HL GK L + V S G L L L + + L+Q P +
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVS--GPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 335 ERVADILHQVDRESLGLQNHLLNEDYSLAQEALVQSKLDISPTQ 378
ER ++ + +HLL L + LV++ + +
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Score = 42.0 bits (98), Expect = 4e-04
Identities = 84/498 (16%), Positives = 142/498 (28%), Gaps = 185/498 (37%)
Query: 31 VDKHRRRPAIFSQNGSFSSTV----ERWL---RLFRDFRRDSLPSTSTFYRKRVTKDLNA 83
+D + RP S GS + + +L F LP T+ A
Sbjct: 1 MDAYSTRPLTLSH-GSLEHVLLVPTASFFIASQLQEQFN-KILPE--------PTEGFAA 50
Query: 84 EED--CVIH---RMLQAVAVPVIGNVCHIFMHGLNSVYGLEKLHDALLHRPKNKSLITVS 138
+++ + L V+ V + F LN L + + L
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC--LTEFENCYLE----------G 98
Query: 139 NHVASVDDPFVIASLLPPSVLLDAQNLRWTLC------ATDRCFKNPATTAFFRSVKVLP 192
N + ++ A LL + + R F + +A FR+
Sbjct: 99 NDIHAL-----AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA----- 148
Query: 193 VSRGD-GIY-----QKGMDMAIAKLNSGGWVHIFPEGSRSRDGGKTVGSPKRGVGRLILD 246
V G+ + Q G N+ + F E RD +T VG LI
Sbjct: 149 VGEGNAQLVAIFGGQ-G--------NTDDY---FEE---LRDLYQT---YHVLVGDLIKF 190
Query: 247 ADNV--PLV-----VPFVHT-GMQDVM------------------PIGATFPRIGKT--- 277
+ L+ V T G+ +++ PI + P IG
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIPI--SCPLIGVIQLA 247
Query: 278 ---VT--VLIGDPIEFDDLVDEEQTKH---------LSRGK----LYDAVAS------RI 313
VT +L P E + + T H ++ + +V I
Sbjct: 248 HYVVTAKLLGFTPGELRSYL-KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 314 G---HQ-------------------------------LKKLKLQ--VDRLALEQPSAERV 337
G ++ L + ++Q V++ P+ ++V
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 338 ADILHQVDR--------ESL-GLQNHLLNEDYSLAQEALVQSKLDISPTQERSFFRMR-L 387
L + +SL GL L A L QS+ I ++ + F R L
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAK---APSGLDQSR--IPFSERKLKFSNRFL 421
Query: 388 SYGDAFASRMRGYMDPTE 405
F S + P
Sbjct: 422 PVASPFHSH---LLVPAS 436
Score = 39.3 bits (91), Expect = 0.003
Identities = 40/245 (16%), Positives = 75/245 (30%), Gaps = 86/245 (35%)
Query: 234 GSPKRGVG----------RLILD-ADNVPLVVPFVHTGMQ---DVMPIGATFPRIGKTVT 279
GS ++G+G + + + ADN H ++ I P +T
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADN--------HFKDTYGFSILDIVINNP---VNLT 1673
Query: 280 VLIGDPIEFDDLVDEEQTKHLSRGK-LYDAVASRIGHQLKKLKLQVDRLALEQPSAERVA 338
+ G +GK + + ++ I + KL+ +++ E E
Sbjct: 1674 IHFGGE----------------KGKRIRENYSAMIFETIVDGKLKTEKIFKEIN--EHST 1715
Query: 339 DILHQVDRESLGL-QNHLLNEDYSLAQEALVQSKLDISPTQERSFFR-MR----LSYGDA 392
+ ++ L Q Q AL E++ F ++ +
Sbjct: 1716 SYTFRSEKGLLSATQF---------TQPALT--------LMEKAAFEDLKSKGLIPADAT 1758
Query: 393 FASRMRG-----YMDPTELMGFAARGLFMNERTTDIAAIVRERGPLRAWKQYMEANLLGK 447
FA G Y L A + E + +V RG + + + LG+
Sbjct: 1759 FA----GHSLGEY---AALASLA--DVMSIE---SLVEVVFYRG--MTMQVAVPRDELGR 1804
Query: 448 WNLLM 452
N M
Sbjct: 1805 SNYGM 1809
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 1e-06
Identities = 81/502 (16%), Positives = 154/502 (30%), Gaps = 152/502 (30%)
Query: 1 MSVQRIERGDLWKNKARALQLQLRDRFRVAVDKHRRRPAIFSQNGSFSSTVERWL--RLF 58
+V R++ K R L+LR V + GS + W+ +
Sbjct: 129 YNVSRLQP----YLKLRQALLELRPAKNVLI--D-------GVLGSGKT----WVALDVC 171
Query: 59 RDFRRDSLPSTSTFYRKRVT-KDLNAEEDCVIHRMLQAVAVPVIGNVCHIFMHGLNSVYG 117
++ F+ + K+ N+ E + MLQ + + N H N
Sbjct: 172 LSYKVQCKMDFKIFW---LNLKNCNSPETVLE--MLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 118 LEKLHDAL----LHRPKNKSLITVSNHVASVDDPFVIASLLPPSVLLDAQNLRWTLCATD 173
+ + L +P L+ VLL+ QN A +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLL----------------------VLLNVQN-AKAWNAFN 263
Query: 174 -RCFKNPATTAFFRSVKVLPVSRGDGIYQKGMDMAIAKLNSGGWVHIFPEGSRSRDGGKT 232
C K+L +R + L++ HI + T
Sbjct: 264 LSC-------------KILLTTRFKQV--------TDFLSAATTTHISLD---HHSMTLT 299
Query: 233 VGSPKRGVGRLILDADNVPLVVPFVHTGMQDVMPIGA--TFPRIGKTVTVLIGDPIEFDD 290
+ L++ ++ QD +P T PR +I + I D
Sbjct: 300 -------------PDEVKSLLLKYLDCRPQD-LPREVLTTNPR----RLSIIAESIR-DG 340
Query: 291 LVDEEQTKHLSRGKLYDAVASRIGHQ----LKKL--KLQV---------DRLAL--EQPS 333
L + KH++ KL + S + +K+ +L V L+L
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 334 AERVADILHQVDRESLGLQNHLLNEDYSLAQEAL-VQSKLDISPTQERSF---FRMRLSY 389
V +++++ + SL ++ S+ L ++ KL+ RS + + ++
Sbjct: 401 KSDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 390 --GDAFASRMRGY-----------MDPTELMG-FAARGLFMNERTTDIAAIVRERGP--- 432
D + Y ++ E M F R +F++ R + +R
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF--RMVFLDFRF--LEQKIRHDSTAWN 515
Query: 433 -----------LRAWKQYMEAN 443
L+ +K Y+ N
Sbjct: 516 ASGSILNTLQQLKFYKPYICDN 537
Score = 34.8 bits (79), Expect = 0.072
Identities = 62/417 (14%), Positives = 116/417 (27%), Gaps = 139/417 (33%)
Query: 10 DLW-KNKARALQLQ---L---RDR--FRVAVDKHRRRPAIFSQNGSFSSTVERWLRLFRD 60
++ A L L R + ++ + + T + L
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLLK 309
Query: 61 F---RRDSLPSTSTFYRKRVTKDLNAEEDCVIHRMLQAVAVPVIGNVCHIFMHGLNSV-- 115
+ R LP E + + +I + ++
Sbjct: 310 YLDCRPQDLP----------------REVLTTNPR----RLSIIAESIRDGLATWDNWKH 349
Query: 116 YGLEKLHDALLHRPKNKSLITVSNHVASVDDPFVIASLLPPSVLLDAQNLRWTLCATDRC 175
+KL + +S++ L+ R +
Sbjct: 350 VNCDKLTTIIE---------------SSLNV-------------LEPAEYR-------KM 374
Query: 176 FKNPATTAFFR-SVK----VLPVSRGDGIYQKGMDMAIAKLNSGGWVHIFPEGSRSRDGG 230
F + F S +L + D I M + KL+ V P+ S
Sbjct: 375 FDR---LSVFPPSAHIPTILLSLIWFDVIKSDVMVVV-NKLHKYSLVEKQPKESTISIPS 430
Query: 231 -----KTVGSPKRGVGRLILDADNVP-------LVVP------FVHTG--MQDVMPIG-- 268
K + + R I+D N+P L+ P + H G ++++
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 269 ATFPRIGKTVTVLIGDPIEFDDL------VDEEQTKHLSRGKLYDAVASRIGHQLKKLKL 322
F + F D + + T + G + + + QLK K
Sbjct: 491 TLFRMV-------------FLDFRFLEQKIRHDSTAWNASGSILNTL-----QQLKFYK- 531
Query: 323 QVDRLALEQPSAER-VADILHQVDR--ESLG-------LQNHLLNEDYSLAQEALVQ 369
+ P ER V IL + + E+L L+ L+ ED ++ +EA Q
Sbjct: 532 --PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.17
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 4/25 (16%)
Query: 315 HQLKKLKLQVDRLALEQP-SAERVA 338
LKKL+ L L SA +A
Sbjct: 20 QALKKLQ---ASLKLYADDSAPALA 41
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase,
family GH74; HET: GLC BGC GAL; 1.95A {Clostridium
thermocellum} PDB: 2cn2_A*
Length = 737
Score = 31.5 bits (71), Expect = 0.70
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 18/97 (18%)
Query: 180 ATTAFFRSVKVLPVSRGDGIYQKGMDMAIAKLNSGGWVHIFPEGSRSRDGGKT----VGS 235
F P + IY + +A N I+ RS DGG T G
Sbjct: 194 VVWVVFDKSSSTPGNPTKTIY-----VGVADKNES----IY----RSTDGGVTWKAVPGQ 240
Query: 236 PKRGVGRLIL-DADNVPLVVPFVHTGMQDVMPIGATF 271
PK + + ++ + + G D G +
Sbjct: 241 PKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVW 277
>2atr_A Acetyltransferase, GNAT family; MCSG, structural genomics, PSI,
protein structure INIT midwest center for structural
genomics; 2.01A {Streptococcus pneumoniae} SCOP:
d.108.1.1
Length = 138
Score = 28.7 bits (64), Expect = 2.0
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 168 TLCATDRCFKNPATTAFFRSVKVLPVSRGDGIYQKGMDMAIAKLNSGGWVHIF 220
+ R + ++ F + + VLP + GI M A+ V +
Sbjct: 52 AVVGLIRLVGDGFSSVFVQDLIVLPSYQRQGIGSSLMKEALGNFKEAYQVQLA 104
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase,
hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP:
b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19
d.315.1.1
Length = 1151
Score = 30.0 bits (68), Expect = 2.2
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 23/57 (40%)
Query: 281 LIGDPIEFDDL----VDEEQTKHLSRGKLYDAVASRIG--H--QLKKLKLQVDRLAL 329
L+ ++F DL VDEE R G H ++K ++ VD L L
Sbjct: 716 LLQSDVKFKDLGLLIVDEEH---------------RFGVRHKERIKAMRANVDILTL 757
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export,
transcription; 2.12A {Homo sapiens}
Length = 203
Score = 28.0 bits (62), Expect = 5.3
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 354 HLLNEDYSLAQEALVQSKLDISPTQERSFFRMRLSY 389
+ + D+ A+E L + + + RM L Y
Sbjct: 24 AMFDSDFKQAEEYLSFA-FEHCHRSSQKNKRMILIY 58
>3efa_A Putative acetyltransferase; structural genom 2, protein structure
initiative, midwest center for structu genomics, MCSG;
2.42A {Lactobacillus plantarum WCFS1}
Length = 147
Score = 26.9 bits (60), Expect = 8.4
Identities = 10/53 (18%), Positives = 14/53 (26%)
Query: 168 TLCATDRCFKNPATTAFFRSVKVLPVSRGDGIYQKGMDMAIAKLNSGGWVHIF 220
T R F V RG G ++ + A G+ H
Sbjct: 57 LPITTLRLEPQADHVMRFGRVCTRKAYRGHGWGRQLLTAAEEWATQRGFTHGE 109
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.409
Gapped
Lambda K H
0.267 0.0595 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,063,289
Number of extensions: 440209
Number of successful extensions: 844
Number of sequences better than 10.0: 1
Number of HSP's gapped: 836
Number of HSP's successfully gapped: 21
Length of query: 452
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 355
Effective length of database: 3,993,456
Effective search space: 1417676880
Effective search space used: 1417676880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.8 bits)