RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 047712
         (452 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 97.4 bits (242), Expect = 6e-23
 Identities = 41/238 (17%), Positives = 76/238 (31%), Gaps = 32/238 (13%)

Query: 113 NSVYGLEKLHDALLHRPKNKSLITVSNHVASVDDPFVIASLLPPSVLLDAQNLRWTLCAT 172
           + V  L    D      +  +++ +SNH  +  DP +I+ LL  +    A+N  +   A 
Sbjct: 111 SFVGNLSLFKDIEEKLQQGHNVVLISNH-QTEADPAIISLLLEKTNPYIAENTIFV--AG 167

Query: 173 DRCFKNPATTAFFRSVKVLPVSRGDGIY-------------QKGMDMAIAKLNSGG-WVH 218
           DR   +P    F     ++ V     ++              + +      L  G   + 
Sbjct: 168 DRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIW 227

Query: 219 IFPEGSRSRDGGKTV-------GSPKRGVGRLILDADNVP-LVVPFVHTGMQDVMPIGAT 270
           I P G R R    T         +      R ++   +VP  + P        + P    
Sbjct: 228 IAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQV 287

Query: 271 FPRIGK-------TVTVLIGDPIEFDDLVDEEQTKHLSRGKLYDAVASRIGHQLKKLK 321
              IG+          + +   I F+++    +     R     A+   +  Q   LK
Sbjct: 288 EIEIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNVLK 345


>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 63

 Score = 25.0 bits (55), Expect = 4.0
 Identities = 9/44 (20%), Positives = 14/44 (31%)

Query: 17 RALQLQLRDRFRVAVDKHRRRPAIFSQNGSFSSTVERWLRLFRD 60
          R L   +R R      +  R   I  Q       V + L  + +
Sbjct: 13 RPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 56


>d1wbaa_ b.42.4.1 (A:) Winged bean albumin 1 {Goa bean (Psophocarpus
           tetragonolobus) [TaxId: 3891]}
          Length = 171

 Score = 26.8 bits (59), Expect = 4.0
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 206 MAIAKLNSGGWVHIF---PEGSRSRDGGKTVGSPKRGVGRLILDADNVPLVVPFV 257
             I K ++    +     P GS  ++ G  + +   G  RL++   + PLVV F 
Sbjct: 117 FTIQKGSNTPRTYKLLFCPVGSPCKNIG--ISTDPEGKKRLVVSYQSDPLVVKFH 169


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,679,083
Number of extensions: 78233
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 6
Length of query: 452
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 364
Effective length of database: 1,199,356
Effective search space: 436565584
Effective search space used: 436565584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.9 bits)