BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047714
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 79/205 (38%), Gaps = 27/205 (13%)
Query: 38 PHGLPFIGNVHQFDFSKPQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKET------ 91
P LP IGN+ Q L LSK+YGP +L+ G+ PI+V+ E KE
Sbjct: 14 PTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGE 73
Query: 92 --------------SKTHDIQFCS---WLAKIRKLCGSYLFNPSRAQSFRPIREDEVSRM 134
++ I F + W +IR+ L N + R E +R
Sbjct: 74 EFSGRGIFPLAERANRGFGIVFSNGKKW-KEIRRFSLMTLRNFGMGKRSIEDRVQEEARC 132
Query: 135 IEYILKSAASKQVNLSGIMRSLASNIICRIGFGKRHGNEYEAISGRSRFLTFFTEIQASP 194
+ L+ + + + I+ N+IC I F KR + + L EI +SP
Sbjct: 133 LVEELRKTKASPCDPTFILGCAPCNVICSIIFHKRFDYKDQQFLNLMEKLNENIEILSSP 192
Query: 195 VGFFVTDYFPFMGWIDKLRGMMRRL 219
++ Y F +D G +L
Sbjct: 193 ---WIQVYNNFPALLDYFPGTHNKL 214
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 38 PHGLPFIGNVHQFDFSKPQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKET 91
P LP IGN+ Q L LSK+YGP +L+ G+ PI+V+ E KE
Sbjct: 16 PTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEA 69
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 24/155 (15%)
Query: 38 PHGLPFIGNVHQFDFSKPQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKE------- 90
P LP IGN+ Q D L LSKIYGP +L+ G+ ++V+ E+ KE
Sbjct: 16 PTPLPVIGNILQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVLHGYEVVKEALIDLGE 75
Query: 91 -------------TSKTHDIQFCS---WLAKIRKLCGSYLFNPSRAQSFRPIREDEVSRM 134
++ I F + W +IR+ L N + R E +R
Sbjct: 76 EFSGRGHFPLAERANRGFGIVFSNGKRW-KEIRRFSLMTLRNFGMGKRSIEDRVQEEARC 134
Query: 135 IEYILKSAASKQVNLSGIMRSLASNIICRIGFGKR 169
+ L+ + + + I+ N+IC I F KR
Sbjct: 135 LVEELRKTKASPCDPTFILGCAPCNVICSIIFQKR 169
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 24/155 (15%)
Query: 38 PHGLPFIGNVHQFDFSKPQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKETSKTHDI 97
P LP IGN+ Q D SK+YGP +++ G+ PI+V E KE +
Sbjct: 15 PTPLPIIGNMLQIDVKDICKSFTNFSKVYGPVFTVYFGMNPIVVFHGYEAVKEALIDNGE 74
Query: 98 QFCS-----WLAKIRKLCGSYLFNPSRAQSFRPIR------------------EDEVSRM 134
+F +I K G N R + R ++E +
Sbjct: 75 EFSGRGNSPISQRITKGLGIISSNGKRWKEIRRFSLTTLRNFGMGKRSIEDRVQEEAHCL 134
Query: 135 IEYILKSAASKQVNLSGIMRSLASNIICRIGFGKR 169
+E + K+ AS + + I+ N+IC + F KR
Sbjct: 135 VEELRKTKASP-CDPTFILGCAPCNVICSVVFQKR 168
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 33/208 (15%)
Query: 38 PHGLPFIGNVHQFDFSKPQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKETSKTHDI 97
P P IGN+ Q D L + S+ YGP +++LG+ P +V+ E KE
Sbjct: 15 PTPFPIIGNILQIDAKDISKSLTKFSECYGPVFTVYLGMKPTVVLHGYEAVKEALVDLGE 74
Query: 98 QFCS-----WLAKIRKLCGSYLFNPSRAQSFRPIR---------------------EDEV 131
+F L K+ K G S A++++ +R ++E
Sbjct: 75 EFAGRGSVPILEKVSKGLGIAF---SNAKTWKEMRRFSLMTLRNFGMGKRSIEDRIQEEA 131
Query: 132 SRMIEYILKSAASKQVNLSGIMRSLASNIICRIGFGKRHGNEYEAISGRSRFLTFFTEIQ 191
++E + K+ AS + + I+ N+IC + F R + E L E+
Sbjct: 132 RCLVEELRKTNASP-CDPTFILGCAPCNVICSVIFHNRFDYKDEEFLKLMESLHENVELL 190
Query: 192 ASPVGFFVTDYFPFMGWIDKLRGMMRRL 219
+P ++ Y F +D G+ + L
Sbjct: 191 GTP---WLQVYNNFPALLDYFPGIHKTL 215
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 30/158 (18%)
Query: 38 PHGLPFIGNVHQFDFSKPQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKETSKTHDI 97
P LPFIGN Q + + L ++S+ YGP ++HLG ++V+ + KE
Sbjct: 15 PTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVKEALVDQAE 74
Query: 98 QFC--------SWLAKIRKLCGSYLFNPSRAQSFRPIR------------------EDEV 131
+F WL K G N RA+ R ++E
Sbjct: 75 EFSGRGEQATFDWLFKG---YGVAFSNGERAKQLRRFSIATLRGFGVGKRGIEERIQEEA 131
Query: 132 SRMIEYILKSAASKQVNLSGIMRSLASNIICRIGFGKR 169
+I+ L+ ++ + + SN+I I FG R
Sbjct: 132 GFLID-ALRGTHGANIDPTFFLSRTVSNVISSIVFGDR 168
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 24/155 (15%)
Query: 38 PHGLPFIGNVHQFDFSKPQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKETSKTHDI 97
P LPFIGN Q + + L ++S+ YGP ++HLG ++V+ + +E
Sbjct: 15 PTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAE 74
Query: 98 QFCSWLAK-----IRKLCGSYLFNPSRAQSFRPIR------------------EDEVSRM 134
+F + + K G N RA+ R ++E +
Sbjct: 75 EFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVGKRGIEERIQEEAGFL 134
Query: 135 IEYILKSAASKQVNLSGIMRSLASNIICRIGFGKR 169
I+ L+ ++ + + SN+I I FG R
Sbjct: 135 ID-ALRGTGGANIDPTFFLSRTVSNVISSIVFGDR 168
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 24/155 (15%)
Query: 38 PHGLPFIGNVHQFDFSKPQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKETSKTHDI 97
P LPFIGN Q + + L ++S+ YGP ++HLG ++V+ + +E
Sbjct: 15 PTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAE 74
Query: 98 QFCSWLAK-----IRKLCGSYLFNPSRAQSFRPIR------------------EDEVSRM 134
+F + + K G N RA+ R ++E +
Sbjct: 75 EFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVGKRGIEERIQEEAGFL 134
Query: 135 IEYILKSAASKQVNLSGIMRSLASNIICRIGFGKR 169
I+ L+ ++ + + SN+I I FG R
Sbjct: 135 ID-ALRGTGGANIDPTFFLSRTVSNVISSIVFGDR 168
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 24/155 (15%)
Query: 38 PHGLPFIGNVHQFDFSKPQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKETSKTHDI 97
P LPFIGN Q + + L ++S+ YGP ++HLG ++V+ + +E
Sbjct: 15 PTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAE 74
Query: 98 QFCSWLAK-----IRKLCGSYLFNPSRAQSFRPIR------------------EDEVSRM 134
+F + + K G N RA+ R ++E +
Sbjct: 75 EFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVGKRGIEERIQEEAGFL 134
Query: 135 IEYILKSAASKQVNLSGIMRSLASNIICRIGFGKR 169
I+ L+ ++ + + SN+I I FG R
Sbjct: 135 ID-ALRGTGGANIDPTFFLSRTVSNVISSIVFGDR 168
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 24/155 (15%)
Query: 38 PHGLPFIGNVHQFDFSKPQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKETSKTHDI 97
P LPFIGN Q + + L ++S+ YGP ++HLG ++V+ + +E
Sbjct: 15 PTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAE 74
Query: 98 QFCSWLAK-----IRKLCGSYLFNPSRAQSFRPIR------------------EDEVSRM 134
+F + + K G N RA+ R ++E +
Sbjct: 75 EFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVGKRGIEERIQEEAGFL 134
Query: 135 IEYILKSAASKQVNLSGIMRSLASNIICRIGFGKR 169
I+ L+ ++ + + SN+I I FG R
Sbjct: 135 ID-ALRGTGGANIDPTFFLSRTVSNVISSIVFGDR 168
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 24/155 (15%)
Query: 38 PHGLPFIGNVHQFDFSKPQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKETSKTHDI 97
P LPFIGN Q + + L ++S+ YGP ++HLG ++V+ + +E
Sbjct: 15 PTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAE 74
Query: 98 QFCSWLAK-----IRKLCGSYLFNPSRAQSFRPIR------------------EDEVSRM 134
+F + + K G N RA+ R ++E +
Sbjct: 75 EFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVGKRGIEERIQEEAGFL 134
Query: 135 IEYILKSAASKQVNLSGIMRSLASNIICRIGFGKR 169
I+ L+ ++ + + SN+I I FG R
Sbjct: 135 ID-ALRGTGGANIDPTFFLSRTVSNVISSIVFGDR 168
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 24/155 (15%)
Query: 38 PHGLPFIGNVHQFDFSKPQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKETSKTHDI 97
P LP +GN+ Q D L + YG +++LG P++V+ + +E
Sbjct: 15 PSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAE 74
Query: 98 QFCSW--LAKIRKLCGSYLFNPSRAQSFRPIR---------------------EDEVSRM 134
F +A + + Y + + +R +R ++E +
Sbjct: 75 AFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATMRDFGMGKRSVEERIQEEARCL 134
Query: 135 IEYILKSAASKQVNLSGIMRSLASNIICRIGFGKR 169
+E + KS + N + + S+ SNIIC I FGKR
Sbjct: 135 VEELRKSKGALLDN-TLLFHSITSNIICSIVFGKR 168
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 24/155 (15%)
Query: 38 PHGLPFIGNVHQFDFSKPQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKETSKTHDI 97
P LP +GN+ Q D L + YG +++LG P++V+ + +E
Sbjct: 15 PSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAE 74
Query: 98 QFCSW--LAKIRKLCGSYLFNPSRAQSFRPIR---------------------EDEVSRM 134
F +A + + Y + + +R +R ++E +
Sbjct: 75 AFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATMRDFGMGKRSVEERIQEEARCL 134
Query: 135 IEYILKSAASKQVNLSGIMRSLASNIICRIGFGKR 169
+E + KS + N + + S+ SNIIC I FGKR
Sbjct: 135 VEELRKSKGALLDN-TLLFHSITSNIICSIVFGKR 168
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 24/155 (15%)
Query: 38 PHGLPFIGNVHQFDFSKPQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKETSKTHDI 97
P LP +GN+ Q D L + YG +++LG P++V+ + +E
Sbjct: 15 PSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAE 74
Query: 98 QFCSW--LAKIRKLCGSYLFNPSRAQSFRPIR---------------------EDEVSRM 134
F +A + + Y + + +R +R ++E +
Sbjct: 75 AFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATMRDFGMGKRSVEERIQEEARCL 134
Query: 135 IEYILKSAASKQVNLSGIMRSLASNIICRIGFGKR 169
+E + KS + N + + S+ SNIIC I FGKR
Sbjct: 135 VEELRKSKGALLDN-TLLFHSITSNIICSIVFGKR 168
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 24/155 (15%)
Query: 38 PHGLPFIGNVHQFDFSKPQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKETSKTHDI 97
P LP +GN+ Q D L + YG +++LG P++V+ + +E
Sbjct: 15 PSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAE 74
Query: 98 QFCSW--LAKIRKLCGSYLFNPSRAQSFRPIR---------------------EDEVSRM 134
F +A + + Y + + +R +R ++E +
Sbjct: 75 AFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATMRDFGMGKRSVEERIQEEARCL 134
Query: 135 IEYILKSAASKQVNLSGIMRSLASNIICRIGFGKR 169
+E + KS + N + + S+ SNIIC I FGKR
Sbjct: 135 VEELRKSKGALLDN-TLLFHSITSNIICSIVFGKR 168
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 24/155 (15%)
Query: 38 PHGLPFIGNVHQFDFSKPQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKETSKTHDI 97
P LP +GN+ Q D L + YG +++LG P++V+ + +E
Sbjct: 15 PSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAE 74
Query: 98 QFCSW--LAKIRKLCGSYLFNPSRAQSFRPIR---------------------EDEVSRM 134
F +A + + Y + + +R +R ++E +
Sbjct: 75 AFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATMRDFGMGKRSVEERIQEEARCL 134
Query: 135 IEYILKSAASKQVNLSGIMRSLASNIICRIGFGKR 169
+E + KS + N + + S+ SNIIC I FGKR
Sbjct: 135 VEELRKSKGALLDN-TLLFHSITSNIICSIVFGKR 168
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 41/205 (20%)
Query: 38 PHGLPFIGNVHQFDFSK-PQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKET----- 91
P G P IG H K P + L +S+ YG + + +G P++V+S + ++
Sbjct: 16 PWGWPLIG--HMLTLGKNPHLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQALVRQG 73
Query: 92 ---------------SKTHDIQFCS-----WLAKIRKLC----GSYLFNPSRAQSFRPIR 127
S + F W A+ R+L S+ A S
Sbjct: 74 DDFKGRPDLYTFTLISNGQSMSFSPDSGPVWAAR-RRLAQNGLKSFSIASDPASSTSCYL 132
Query: 128 EDEVSRMIEYILKS-----AASKQVNLSGIMRSLASNIICRIGFGKRHGNEYEAISGRSR 182
E+ VS+ E ++ + A N + +N+IC I FG+R+ + ++ +
Sbjct: 133 EEHVSKEAEVLISTLQELMAGPGHFNPYRYVVVSVTNVICAICFGRRYDHNHQELLSLVN 192
Query: 183 FLTFFTEIQAS--PVGFF-VTDYFP 204
F E+ S P F + Y P
Sbjct: 193 LNNNFGEVVGSGNPADFIPILRYLP 217
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In
Complex With Alpha-Naphthoflavone
Length = 495
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 38 PHGLPFIGNVHQFDFSKPQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKE 90
P G P +G+V P + L +S+ YG + + +G P++V+S + ++
Sbjct: 21 PWGWPLLGHVLTLG-KNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQ 72
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
4- Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
4- Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 38 PHGLPFIGNVHQFDFSKPQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKET 91
P LP IGN+ Q + L++ +GP +L++G ++V+ + KE
Sbjct: 15 PFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEA 68
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 25/151 (16%)
Query: 66 YGPFISLHLGVVPIIVVSSAEMAKET--SKTHDIQFCSWLAKIRKLCGSY---------- 113
YG ++HLG P++++ E +E K +A + Y
Sbjct: 43 YGDVFTVHLGPRPVVMLCGVEAIREALVDKAEAFSGRGKIAMVDPFFRGYGVIFANGNRW 102
Query: 114 ----LFNPSRAQSF----RPIRE---DEVSRMIEYILKSAASKQVNLSGIMRSLASNIIC 162
F+ + + F R + E +E +IE + KS + ++ + + +S+ +NIIC
Sbjct: 103 KVLRRFSVTTMRDFGMGKRSVEERIQEEAQCLIEELRKSKGA-LMDPTFLFQSITANIIC 161
Query: 163 RIGFGKR-HGNEYEAISGRSRFLTFFTEIQA 192
I FGKR H + E + + F F+ I +
Sbjct: 162 SIVFGKRFHYQDQEFLKMLNLFYQTFSLISS 192
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 55 PQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKE 90
P V + + S++YG SL LG + +V++ ++ KE
Sbjct: 36 PHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKE 71
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 55 PQVLLWELSKIYGPFISLHLGVVPIIVVSSAEMAKE 90
P V + + S++YG SL LG + +V++ ++ KE
Sbjct: 36 PHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKE 71
>pdb|1A7M|A Chain A, Leukaemia Inhibitory Factor Chimera (Mh35-Lif), Nmr, 20
Structures
Length = 180
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 19/86 (22%)
Query: 105 KIRKLCGSYL--FNPSRAQSFRPIREDEVSRMIEYILKSAAS-----KQVNLSGI----- 152
+ KLCG + F P A + E+ RM+ Y+ S + K +N S +
Sbjct: 55 NLDKLCGPNVTDFPPFHANGTEKAKLVELYRMVAYLSASLTNITRDQKVLNPSAVSLHSK 114
Query: 153 -------MRSLASNIICRIGFGKRHG 171
MR L SN++CR+ R G
Sbjct: 115 LNATIDVMRGLLSNVLCRLCNKYRVG 140
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With
Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With
Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With
Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With
Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 60 WELSKIYGPFISLHLGVVPIIVVSSAEMAKE 90
++L K YGP S+ +G ++V ++AKE
Sbjct: 36 FKLQKKYGPIYSVRMGTKTTVIVGHHQLAKE 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,680,860
Number of Sequences: 62578
Number of extensions: 201215
Number of successful extensions: 522
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 36
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)