Query 047717
Match_columns 303
No_of_seqs 308 out of 2184
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 02:25:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3062 RNA polymerase II elon 100.0 5.4E-76 1.2E-80 496.0 24.3 277 1-297 1-277 (281)
2 PF08433 KTI12: Chromatin asso 100.0 6.7E-67 1.5E-71 468.7 23.7 269 1-296 1-270 (270)
3 COG4088 Predicted nucleotide k 100.0 1.4E-51 3.1E-56 344.7 15.8 248 1-297 1-258 (261)
4 TIGR03574 selen_PSTK L-seryl-t 100.0 4.4E-48 9.6E-53 345.4 22.8 249 3-296 1-249 (249)
5 TIGR03575 selen_PSTK_euk L-ser 100.0 2.5E-38 5.4E-43 290.9 27.1 198 69-291 122-325 (340)
6 KOG4622 Predicted nucleotide k 99.8 2E-20 4.4E-25 155.9 11.5 218 1-230 1-242 (291)
7 PF13671 AAA_33: AAA domain; P 99.8 4.4E-19 9.6E-24 144.4 12.9 138 3-145 1-143 (143)
8 PRK06762 hypothetical protein; 99.8 1.1E-17 2.4E-22 140.1 15.0 134 1-145 1-137 (166)
9 cd02021 GntK Gluconate kinase 99.7 2.1E-17 4.6E-22 136.0 12.1 139 3-147 1-140 (150)
10 PHA02530 pseT polynucleotide k 99.7 6.4E-17 1.4E-21 148.1 13.6 136 2-147 3-145 (300)
11 TIGR01663 PNK-3'Pase polynucle 99.7 2.7E-16 5.9E-21 152.6 14.3 130 2-153 370-501 (526)
12 COG0529 CysC Adenylylsulfate k 99.7 7.6E-16 1.6E-20 127.1 12.6 162 2-181 24-191 (197)
13 PF01583 APS_kinase: Adenylyls 99.7 5.3E-16 1.2E-20 127.8 9.8 145 2-161 3-153 (156)
14 TIGR01313 therm_gnt_kin carboh 99.7 3.3E-15 7.2E-20 124.6 14.6 155 4-180 1-162 (163)
15 cd00227 CPT Chloramphenicol (C 99.6 1.6E-14 3.5E-19 122.1 16.1 158 2-181 3-172 (175)
16 TIGR00455 apsK adenylylsulfate 99.6 3.1E-15 6.8E-20 127.4 11.6 149 2-163 19-171 (184)
17 COG4639 Predicted kinase [Gene 99.6 5.2E-15 1.1E-19 119.7 11.5 128 2-141 3-132 (168)
18 COG0645 Predicted kinase [Gene 99.6 2.7E-14 6E-19 117.6 13.5 149 2-155 2-153 (170)
19 cd02027 APSK Adenosine 5'-phos 99.5 5.1E-14 1.1E-18 116.1 10.7 114 3-121 1-116 (149)
20 PRK11545 gntK gluconate kinase 99.5 9.7E-13 2.1E-17 110.1 16.5 157 7-180 1-159 (163)
21 PRK05537 bifunctional sulfate 99.5 6.2E-13 1.3E-17 131.3 16.1 167 3-181 394-562 (568)
22 PF01591 6PF2K: 6-phosphofruct 99.5 1.6E-12 3.4E-17 113.5 14.1 138 3-141 14-167 (222)
23 PRK00889 adenylylsulfate kinas 99.5 8.8E-13 1.9E-17 111.3 12.1 111 2-119 5-117 (175)
24 PRK05506 bifunctional sulfate 99.4 9E-13 1.9E-17 132.4 13.3 113 2-119 461-575 (632)
25 KOG3354 Gluconate kinase [Carb 99.4 2.7E-12 5.8E-17 103.8 13.3 158 3-181 14-184 (191)
26 cd01672 TMPK Thymidine monopho 99.4 4.1E-12 8.9E-17 108.6 15.1 156 2-161 1-184 (200)
27 PRK03846 adenylylsulfate kinas 99.4 2.5E-12 5.3E-17 110.9 13.4 113 2-119 25-139 (198)
28 PRK14527 adenylate kinase; Pro 99.4 6.4E-13 1.4E-17 113.9 9.7 139 2-144 7-155 (191)
29 PRK14531 adenylate kinase; Pro 99.4 2E-12 4.3E-17 110.2 11.9 116 3-124 4-130 (183)
30 PRK14532 adenylate kinase; Pro 99.4 1.7E-12 3.7E-17 110.8 11.0 117 1-123 1-128 (188)
31 PRK05541 adenylylsulfate kinas 99.4 7.3E-12 1.6E-16 105.8 14.2 112 2-121 8-121 (176)
32 PRK09825 idnK D-gluconate kina 99.4 1.4E-11 3E-16 104.4 15.5 156 3-181 5-168 (176)
33 TIGR01359 UMP_CMP_kin_fam UMP- 99.4 1.8E-12 3.9E-17 110.0 9.2 115 3-124 1-126 (183)
34 TIGR00041 DTMP_kinase thymidyl 99.3 4.5E-11 9.8E-16 102.4 16.1 154 2-161 4-185 (195)
35 PRK06217 hypothetical protein; 99.3 6.7E-11 1.4E-15 100.7 16.5 104 1-124 1-106 (183)
36 COG3265 GntK Gluconate kinase 99.3 3.5E-11 7.7E-16 96.8 13.6 135 7-160 1-142 (161)
37 COG0283 Cmk Cytidylate kinase 99.3 1E-11 2.2E-16 106.2 11.1 163 2-182 5-216 (222)
38 cd01673 dNK Deoxyribonucleosid 99.3 2.4E-11 5.3E-16 104.0 13.3 154 3-164 1-188 (193)
39 TIGR01360 aden_kin_iso1 adenyl 99.3 1.2E-11 2.5E-16 105.2 11.1 118 1-124 3-129 (188)
40 KOG0635 Adenosine 5'-phosphosu 99.3 2.3E-11 4.9E-16 98.1 11.6 162 2-181 32-200 (207)
41 COG1428 Deoxynucleoside kinase 99.3 2.1E-11 4.5E-16 104.1 12.0 174 1-182 4-209 (216)
42 PRK13973 thymidylate kinase; P 99.3 1.5E-10 3.3E-15 101.0 17.3 155 2-161 4-190 (213)
43 PRK00698 tmk thymidylate kinas 99.3 1.4E-10 2.9E-15 100.1 16.9 154 2-161 4-186 (205)
44 PRK00625 shikimate kinase; Pro 99.3 7.3E-12 1.6E-16 105.7 8.2 114 3-124 2-118 (173)
45 PRK01184 hypothetical protein; 99.3 4.2E-11 9.1E-16 101.8 11.7 114 1-124 1-126 (184)
46 PRK13949 shikimate kinase; Pro 99.3 2.4E-11 5.2E-16 102.3 9.6 113 1-121 1-113 (169)
47 PRK02496 adk adenylate kinase; 99.3 2.7E-11 5.8E-16 103.1 9.7 135 1-144 1-147 (184)
48 PRK13946 shikimate kinase; Pro 99.3 3E-11 6.6E-16 103.0 9.7 161 2-180 11-175 (184)
49 PF07931 CPT: Chloramphenicol 99.3 1.2E-10 2.5E-15 98.1 12.9 116 2-125 2-133 (174)
50 PF06414 Zeta_toxin: Zeta toxi 99.2 1.5E-11 3.3E-16 106.1 7.3 118 3-125 17-144 (199)
51 cd02030 NDUO42 NADH:Ubiquinone 99.2 2.7E-10 5.8E-15 99.9 15.2 172 3-180 1-216 (219)
52 PRK00131 aroK shikimate kinase 99.2 2.4E-11 5.1E-16 101.9 7.8 148 2-164 5-157 (175)
53 PRK13947 shikimate kinase; Pro 99.2 8.5E-11 1.8E-15 98.6 11.1 114 1-124 1-116 (171)
54 PRK00279 adk adenylate kinase; 99.2 1E-10 2.2E-15 102.2 11.5 115 3-123 2-128 (215)
55 PLN02924 thymidylate kinase 99.2 2.7E-10 5.8E-15 99.8 14.1 137 2-144 17-175 (220)
56 PRK03839 putative kinase; Prov 99.2 1.7E-10 3.7E-15 97.8 12.4 100 3-123 2-101 (180)
57 COG0703 AroK Shikimate kinase 99.2 1.3E-10 2.8E-15 96.9 11.0 160 1-180 2-167 (172)
58 PLN02200 adenylate kinase fami 99.2 7.1E-11 1.5E-15 104.5 9.7 110 2-124 44-168 (234)
59 COG0125 Tmk Thymidylate kinase 99.2 7.3E-10 1.6E-14 95.9 15.7 171 1-180 3-202 (208)
60 PRK13808 adenylate kinase; Pro 99.2 2.4E-10 5.1E-15 105.3 13.1 117 1-122 1-127 (333)
61 PRK08118 topology modulation p 99.2 1.7E-10 3.7E-15 96.8 10.5 101 1-124 1-101 (167)
62 PRK07933 thymidylate kinase; V 99.2 2E-09 4.4E-14 93.9 17.5 156 2-160 1-196 (213)
63 cd01428 ADK Adenylate kinase ( 99.2 4.3E-10 9.3E-15 96.1 12.1 112 4-124 2-127 (194)
64 PRK08233 hypothetical protein; 99.2 1.1E-09 2.5E-14 92.4 14.5 111 2-124 4-120 (182)
65 PTZ00322 6-phosphofructo-2-kin 99.2 7.1E-10 1.5E-14 112.0 15.5 140 2-141 216-365 (664)
66 PRK14528 adenylate kinase; Pro 99.1 5.9E-10 1.3E-14 95.2 11.8 118 1-124 1-130 (186)
67 PRK10078 ribose 1,5-bisphospho 99.1 1.3E-09 2.7E-14 93.1 13.9 109 3-124 4-133 (186)
68 TIGR02322 phosphon_PhnN phosph 99.1 4.1E-09 8.8E-14 89.1 16.6 112 2-124 2-133 (179)
69 cd00464 SK Shikimate kinase (S 99.1 2.3E-10 5E-15 94.1 8.6 112 4-123 2-113 (154)
70 COG1102 Cmk Cytidylate kinase 99.1 7.8E-11 1.7E-15 96.2 5.5 110 2-124 1-113 (179)
71 PRK07261 topology modulation p 99.1 4.3E-10 9.3E-15 94.8 10.1 100 3-124 2-101 (171)
72 KOG3079 Uridylate kinase/adeny 99.1 3.6E-10 7.7E-15 94.3 9.2 117 2-125 9-136 (195)
73 PRK03731 aroL shikimate kinase 99.1 3.9E-10 8.4E-15 94.7 9.5 114 1-123 2-115 (171)
74 PRK13948 shikimate kinase; Pro 99.1 6.6E-10 1.4E-14 94.5 10.9 109 3-121 12-122 (182)
75 TIGR01351 adk adenylate kinase 99.1 2.8E-10 6.1E-15 99.0 8.5 114 4-124 2-126 (210)
76 PRK06696 uridine kinase; Valid 99.1 7.3E-10 1.6E-14 97.3 10.8 111 2-123 23-168 (223)
77 PRK14530 adenylate kinase; Pro 99.1 3.2E-10 6.8E-15 99.0 8.2 117 2-124 4-128 (215)
78 PRK05057 aroK shikimate kinase 99.1 9E-10 2E-14 92.9 10.5 144 2-162 5-155 (172)
79 PRK04040 adenylate kinase; Pro 99.1 2E-09 4.4E-14 92.0 11.6 113 1-121 2-130 (188)
80 PRK14529 adenylate kinase; Pro 99.0 1.3E-09 2.9E-14 95.4 10.4 120 1-123 1-127 (223)
81 PRK13975 thymidylate kinase; P 99.0 3.3E-09 7.1E-14 90.9 12.7 167 2-180 3-189 (196)
82 PRK06547 hypothetical protein; 99.0 2.3E-09 5E-14 90.4 11.3 110 1-124 15-140 (172)
83 COG1936 Predicted nucleotide k 99.0 1E-09 2.2E-14 90.9 8.7 133 2-165 1-143 (180)
84 PTZ00301 uridine kinase; Provi 99.0 6.5E-09 1.4E-13 90.4 14.2 115 2-124 4-149 (210)
85 COG0563 Adk Adenylate kinase a 99.0 1E-08 2.2E-13 86.9 14.3 148 3-160 2-157 (178)
86 PRK07667 uridine kinase; Provi 99.0 3.8E-09 8.2E-14 90.7 11.7 111 2-123 18-160 (193)
87 PRK12339 2-phosphoglycerate ki 99.0 6.5E-09 1.4E-13 89.5 13.1 114 2-126 4-144 (197)
88 PRK08356 hypothetical protein; 99.0 1.1E-08 2.3E-13 88.0 13.9 110 2-124 6-137 (195)
89 PRK13974 thymidylate kinase; P 99.0 4.1E-08 8.9E-13 85.6 17.5 123 2-124 4-157 (212)
90 TIGR00017 cmk cytidylate kinas 99.0 2.2E-09 4.7E-14 93.9 8.9 163 1-181 2-215 (217)
91 PRK13477 bifunctional pantoate 99.0 2.5E-09 5.5E-14 103.9 10.2 30 2-31 285-314 (512)
92 PRK04182 cytidylate kinase; Pr 99.0 4.3E-10 9.2E-15 94.8 4.2 110 3-124 2-114 (180)
93 PRK13976 thymidylate kinase; P 99.0 6.2E-08 1.3E-12 84.3 17.4 139 2-144 1-164 (209)
94 cd02025 PanK Pantothenate kina 99.0 5.7E-09 1.2E-13 91.5 10.6 119 3-124 1-151 (220)
95 PF13207 AAA_17: AAA domain; P 98.9 2.5E-09 5.5E-14 84.3 7.3 106 3-122 1-110 (121)
96 cd02020 CMPK Cytidine monophos 98.9 2.5E-09 5.5E-14 86.9 7.4 123 3-143 1-125 (147)
97 PF13238 AAA_18: AAA domain; P 98.9 8.9E-10 1.9E-14 87.4 3.8 107 4-124 1-114 (129)
98 PRK14738 gmk guanylate kinase; 98.9 8E-09 1.7E-13 89.7 9.9 163 2-181 14-194 (206)
99 PRK14737 gmk guanylate kinase; 98.9 2.5E-08 5.4E-13 85.2 12.8 130 1-141 4-151 (186)
100 PLN02674 adenylate kinase 98.9 7.1E-09 1.5E-13 91.9 9.6 122 2-124 32-160 (244)
101 cd02024 NRK1 Nicotinamide ribo 98.9 5.7E-09 1.2E-13 89.0 8.6 24 3-26 1-24 (187)
102 KOG3877 NADH:ubiquinone oxidor 98.9 4.2E-08 9.2E-13 86.7 13.6 143 2-144 72-261 (393)
103 PRK14730 coaE dephospho-CoA ki 98.9 9.7E-09 2.1E-13 88.4 9.4 114 1-123 1-147 (195)
104 PTZ00088 adenylate kinase 1; P 98.9 7.6E-09 1.6E-13 91.2 8.8 112 3-123 8-131 (229)
105 PRK09518 bifunctional cytidyla 98.9 1.1E-08 2.3E-13 104.3 11.1 70 104-180 157-226 (712)
106 cd02028 UMPK_like Uridine mono 98.9 1.5E-08 3.4E-13 85.9 10.2 138 3-154 1-168 (179)
107 PF02223 Thymidylate_kin: Thym 98.9 1.2E-08 2.7E-13 86.7 9.7 151 6-161 1-176 (186)
108 PRK05480 uridine/cytidine kina 98.9 2.6E-08 5.7E-13 86.4 11.8 110 2-123 7-147 (209)
109 KOG4238 Bifunctional ATP sulfu 98.9 5.9E-09 1.3E-13 95.0 7.9 164 2-182 51-221 (627)
110 PRK11860 bifunctional 3-phosph 98.9 5.2E-09 1.1E-13 105.8 8.5 162 2-182 443-652 (661)
111 PRK14526 adenylate kinase; Pro 98.9 2.3E-08 5E-13 87.1 11.3 114 1-123 1-123 (211)
112 PRK08154 anaerobic benzoate ca 98.9 5.7E-09 1.2E-13 96.1 7.9 145 2-162 134-285 (309)
113 PRK14021 bifunctional shikimat 98.9 1.1E-08 2.4E-13 101.0 9.9 166 2-180 7-175 (542)
114 TIGR02173 cyt_kin_arch cytidyl 98.8 3E-09 6.6E-14 88.9 5.0 111 2-124 1-114 (171)
115 PRK00081 coaE dephospho-CoA ki 98.8 9.3E-09 2E-13 88.4 7.8 53 75-142 107-160 (194)
116 COG0572 Udk Uridine kinase [Nu 98.8 4.8E-08 1E-12 84.5 11.5 126 3-140 10-166 (218)
117 PRK12337 2-phosphoglycerate ki 98.8 6.7E-08 1.5E-12 92.3 13.4 119 2-124 256-406 (475)
118 PRK05439 pantothenate kinase; 98.8 3E-08 6.6E-13 90.8 10.5 119 3-124 88-239 (311)
119 PF00406 ADK: Adenylate kinase 98.8 1.7E-08 3.7E-13 83.1 7.7 110 6-121 1-122 (151)
120 PRK14734 coaE dephospho-CoA ki 98.8 2.3E-08 4.9E-13 86.4 8.8 71 75-161 108-178 (200)
121 PRK05416 glmZ(sRNA)-inactivati 98.8 1.4E-07 3.1E-12 85.7 14.3 97 1-121 6-105 (288)
122 PTZ00451 dephospho-CoA kinase; 98.8 3.4E-08 7.5E-13 87.6 10.0 28 1-28 1-28 (244)
123 TIGR03263 guanyl_kin guanylate 98.8 1E-07 2.3E-12 80.5 12.5 130 2-143 2-149 (180)
124 PRK15453 phosphoribulokinase; 98.8 8.3E-08 1.8E-12 86.3 12.2 145 2-156 6-198 (290)
125 PLN02422 dephospho-CoA kinase 98.8 4.1E-08 8.9E-13 86.4 9.6 27 1-28 1-27 (232)
126 PLN02459 probable adenylate ki 98.8 1.5E-08 3.3E-13 90.3 6.9 116 4-124 32-155 (261)
127 PRK00023 cmk cytidylate kinase 98.8 3.2E-08 7E-13 87.0 8.6 31 2-32 5-35 (225)
128 COG0194 Gmk Guanylate kinase [ 98.8 3.2E-08 6.8E-13 83.2 7.9 132 2-144 5-153 (191)
129 PRK12338 hypothetical protein; 98.7 5.4E-08 1.2E-12 89.2 10.1 120 2-124 5-152 (319)
130 PLN02842 nucleotide kinase 98.7 8.1E-08 1.8E-12 92.9 11.2 116 5-123 1-122 (505)
131 smart00072 GuKc Guanylate kina 98.7 4.6E-08 9.9E-13 83.3 7.9 116 2-124 3-137 (184)
132 KOG3347 Predicted nucleotide k 98.7 4.6E-08 9.9E-13 79.0 7.3 101 2-124 8-115 (176)
133 TIGR00235 udk uridine kinase. 98.7 1.7E-07 3.8E-12 81.2 11.4 25 3-27 8-32 (207)
134 PF08303 tRNA_lig_kinase: tRNA 98.7 4.1E-07 8.8E-12 75.1 12.7 126 3-148 1-152 (168)
135 PRK13951 bifunctional shikimat 98.7 7.6E-08 1.6E-12 93.8 9.9 111 3-124 2-114 (488)
136 PF00485 PRK: Phosphoribulokin 98.7 4.1E-08 8.8E-13 84.3 7.0 27 3-29 1-27 (194)
137 PRK00300 gmk guanylate kinase; 98.7 7.3E-07 1.6E-11 76.9 14.6 128 3-143 7-153 (205)
138 PLN02199 shikimate kinase 98.7 1.2E-07 2.6E-12 85.7 9.7 111 3-121 104-214 (303)
139 PHA03132 thymidine kinase; Pro 98.7 6.1E-07 1.3E-11 88.1 15.0 139 1-144 257-444 (580)
140 COG4185 Uncharacterized protei 98.7 2.1E-07 4.5E-12 76.1 9.7 134 1-141 1-136 (187)
141 TIGR00554 panK_bact pantothena 98.7 1.9E-07 4E-12 85.0 10.5 119 3-123 64-218 (290)
142 PRK14732 coaE dephospho-CoA ki 98.6 1E-07 2.2E-12 82.1 7.7 42 73-123 102-143 (196)
143 PRK12269 bifunctional cytidyla 98.6 2.7E-07 5.8E-12 95.0 12.0 105 58-184 174-284 (863)
144 cd02023 UMPK Uridine monophosp 98.6 7E-07 1.5E-11 76.7 12.4 24 3-26 1-24 (198)
145 cd02022 DPCK Dephospho-coenzym 98.6 1.4E-07 3.1E-12 79.9 7.8 24 3-27 1-24 (179)
146 PRK09270 nucleoside triphospha 98.6 1.4E-06 3E-11 76.9 14.0 117 3-124 35-183 (229)
147 PRK06761 hypothetical protein; 98.6 4E-07 8.7E-12 82.4 10.7 120 2-124 4-129 (282)
148 PLN02348 phosphoribulokinase 98.6 5E-07 1.1E-11 84.8 11.5 26 2-27 50-75 (395)
149 cd02019 NK Nucleoside/nucleoti 98.6 2.1E-07 4.6E-12 66.3 7.0 23 3-25 1-23 (69)
150 PRK14733 coaE dephospho-CoA ki 98.6 2E-07 4.3E-12 80.6 8.1 26 3-28 8-33 (204)
151 TIGR00152 dephospho-CoA kinase 98.5 3.3E-07 7.1E-12 78.2 7.8 26 3-28 1-26 (188)
152 PRK14731 coaE dephospho-CoA ki 98.5 4.9E-07 1.1E-11 78.6 8.8 41 75-124 116-156 (208)
153 COG0237 CoaE Dephospho-CoA kin 98.5 2.7E-07 5.9E-12 79.5 7.0 26 1-27 2-27 (201)
154 cd02029 PRK_like Phosphoribulo 98.5 1.8E-06 3.9E-11 77.2 12.3 144 3-157 1-193 (277)
155 PF01202 SKI: Shikimate kinase 98.5 9.9E-08 2.1E-12 79.3 2.8 107 10-124 1-107 (158)
156 PF01121 CoaE: Dephospho-CoA k 98.4 6.7E-07 1.5E-11 75.9 7.6 119 2-140 1-156 (180)
157 COG1072 CoaA Panthothenate kin 98.4 9.4E-07 2E-11 78.6 8.3 117 3-124 84-233 (283)
158 COG2019 AdkA Archaeal adenylat 98.4 1.6E-06 3.5E-11 71.5 8.9 25 1-25 4-28 (189)
159 COG3709 Uncharacterized compon 98.4 2.1E-05 4.5E-10 64.7 14.8 141 2-161 6-166 (192)
160 cd00071 GMPK Guanosine monopho 98.4 3E-07 6.5E-12 74.6 3.6 102 3-111 1-120 (137)
161 PRK04220 2-phosphoglycerate ki 98.3 4.8E-06 1E-10 75.8 11.2 118 3-124 94-237 (301)
162 PF00625 Guanylate_kin: Guanyl 98.3 2.6E-06 5.7E-11 72.3 8.0 115 2-124 3-137 (183)
163 COG1618 Predicted nucleotide k 98.3 9.4E-06 2E-10 66.7 10.7 99 2-100 6-131 (179)
164 PLN02318 phosphoribulokinase/u 98.3 1.4E-05 3.1E-10 78.5 13.8 34 2-39 66-99 (656)
165 PRK07429 phosphoribulokinase; 98.3 1.1E-05 2.3E-10 74.9 12.2 36 2-39 9-44 (327)
166 cd02026 PRK Phosphoribulokinas 98.3 7.3E-06 1.6E-10 74.2 10.9 25 3-27 1-25 (273)
167 PRK03333 coaE dephospho-CoA ki 98.2 4.7E-06 1E-10 79.3 8.3 27 1-28 1-27 (395)
168 PRK00091 miaA tRNA delta(2)-is 98.2 2.5E-05 5.3E-10 71.8 12.6 27 2-28 5-31 (307)
169 KOG3308 Uncharacterized protei 98.2 6.6E-06 1.4E-10 69.9 7.3 26 3-28 6-31 (225)
170 PLN02165 adenylate isopentenyl 98.2 1E-05 2.2E-10 74.6 9.3 123 2-124 44-197 (334)
171 PLN02772 guanylate kinase 98.1 1.6E-05 3.4E-10 74.8 9.6 128 2-142 136-283 (398)
172 PHA00729 NTP-binding motif con 98.1 2.3E-05 5.1E-10 68.5 9.6 115 3-124 19-141 (226)
173 PRK09087 hypothetical protein; 98.1 5.2E-05 1.1E-09 66.8 11.7 128 2-143 45-186 (226)
174 PF00004 AAA: ATPase family as 98.0 4.3E-05 9.3E-10 60.4 9.6 68 4-83 1-68 (132)
175 PRK08084 DNA replication initi 98.0 0.00011 2.4E-09 65.0 12.8 26 2-27 46-71 (235)
176 KOG3220 Similar to bacterial d 98.0 1.5E-05 3.2E-10 67.7 6.0 113 1-123 1-147 (225)
177 PRK05800 cobU adenosylcobinami 98.0 2.2E-05 4.7E-10 66.1 6.9 26 1-26 1-26 (170)
178 PF03668 ATP_bind_2: P-loop AT 98.0 8.7E-05 1.9E-09 66.8 10.9 96 1-121 1-101 (284)
179 PF01712 dNK: Deoxynucleoside 98.0 1E-05 2.2E-10 66.3 4.6 81 95-176 60-142 (146)
180 KOG2702 Predicted panthothenat 97.9 5.5E-05 1.2E-09 65.7 7.8 119 3-125 121-282 (323)
181 KOG1533 Predicted GTPase [Gene 97.9 7.6E-05 1.6E-09 65.0 8.3 36 4-39 5-40 (290)
182 PHA03136 thymidine kinase; Pro 97.8 0.00028 6.1E-09 65.9 12.5 43 101-144 191-233 (378)
183 cd03115 SRP The signal recogni 97.8 0.00022 4.8E-09 59.7 10.8 36 3-40 2-37 (173)
184 COG3896 Chloramphenicol 3-O-ph 97.8 0.00021 4.5E-09 58.7 9.7 118 2-124 24-162 (205)
185 PRK06893 DNA replication initi 97.8 0.00037 8E-09 61.4 12.3 26 2-27 40-65 (229)
186 PF01745 IPT: Isopentenyl tran 97.8 0.0011 2.5E-08 57.2 14.4 134 1-146 1-164 (233)
187 KOG1384 tRNA delta(2)-isopente 97.7 0.00022 4.7E-09 65.0 9.9 117 3-124 9-160 (348)
188 TIGR00174 miaA tRNA isopenteny 97.7 0.00025 5.5E-09 64.5 10.3 25 3-27 1-25 (287)
189 KOG0234 Fructose-6-phosphate 2 97.7 0.00046 9.9E-09 65.3 12.1 118 3-121 30-160 (438)
190 PRK00771 signal recognition pa 97.7 0.00036 7.8E-09 67.2 11.6 36 3-40 97-132 (437)
191 PRK05642 DNA replication initi 97.7 0.00059 1.3E-08 60.4 12.0 34 3-38 47-80 (234)
192 PRK08727 hypothetical protein; 97.7 0.0014 3.1E-08 57.8 14.4 33 3-37 43-75 (233)
193 KOG2134 Polynucleotide kinase 97.7 0.0001 2.2E-09 68.2 6.9 123 3-147 271-395 (422)
194 PRK06620 hypothetical protein; 97.7 0.00097 2.1E-08 58.2 12.7 24 3-26 46-69 (214)
195 TIGR03707 PPK2_P_aer polyphosp 97.7 0.0021 4.5E-08 56.6 14.6 144 3-162 33-205 (230)
196 COG2074 2-phosphoglycerate kin 97.7 8.8E-05 1.9E-09 65.3 5.9 117 3-124 91-232 (299)
197 PF05729 NACHT: NACHT domain 97.6 0.00041 8.8E-09 56.9 9.5 26 3-28 2-27 (166)
198 PF13173 AAA_14: AAA domain 97.6 0.00055 1.2E-08 54.5 9.8 98 2-115 3-101 (128)
199 PLN03025 replication factor C 97.6 0.0023 4.9E-08 59.3 15.3 27 1-27 34-60 (319)
200 KOG3327 Thymidylate kinase/ade 97.6 0.0002 4.4E-09 60.2 7.3 125 2-132 6-151 (208)
201 cd00009 AAA The AAA+ (ATPases 97.6 0.00079 1.7E-08 53.3 10.7 34 3-38 21-54 (151)
202 PF13189 Cytidylate_kin2: Cyti 97.6 0.0003 6.5E-09 59.6 7.9 112 3-124 1-136 (179)
203 PLN02748 tRNA dimethylallyltra 97.6 0.00038 8.3E-09 67.3 9.5 28 2-29 23-50 (468)
204 cd03116 MobB Molybdenum is an 97.6 0.00014 3.1E-09 60.5 5.7 29 1-29 1-29 (159)
205 PRK10751 molybdopterin-guanine 97.6 0.00013 2.8E-09 61.4 5.5 29 1-29 6-34 (173)
206 TIGR03708 poly_P_AMP_trns poly 97.6 0.0028 6.1E-08 61.7 15.4 163 3-182 42-233 (493)
207 PRK12402 replication factor C 97.6 0.00077 1.7E-08 62.4 11.1 27 2-28 37-63 (337)
208 TIGR01425 SRP54_euk signal rec 97.5 0.0013 2.9E-08 62.9 12.6 37 3-41 102-138 (429)
209 cd01120 RecA-like_NTPases RecA 97.5 0.0006 1.3E-08 55.5 8.8 35 3-39 1-35 (165)
210 KOG0744 AAA+-type ATPase [Post 97.5 0.00019 4.2E-09 65.3 5.8 26 2-27 178-203 (423)
211 TIGR03709 PPK2_rel_1 polyphosp 97.5 0.0047 1E-07 55.5 14.6 144 3-162 58-230 (264)
212 TIGR00064 ftsY signal recognit 97.5 0.0017 3.7E-08 58.8 12.0 37 2-40 73-109 (272)
213 PRK14974 cell division protein 97.5 0.0013 2.9E-08 61.2 11.5 37 2-40 141-177 (336)
214 cd01131 PilT Pilus retraction 97.5 0.00061 1.3E-08 58.6 8.6 25 3-27 3-27 (198)
215 KOG4235 Mitochondrial thymidin 97.5 0.0013 2.8E-08 55.9 10.1 60 101-160 153-216 (244)
216 PRK13768 GTPase; Provisional 97.5 0.00053 1.1E-08 61.4 8.3 36 1-38 2-37 (253)
217 PF03976 PPK2: Polyphosphate k 97.5 0.0017 3.6E-08 57.2 11.1 138 3-162 33-205 (228)
218 COG1660 Predicted P-loop-conta 97.5 0.0017 3.7E-08 57.5 11.0 96 1-121 1-102 (286)
219 PRK04296 thymidine kinase; Pro 97.4 0.001 2.2E-08 56.9 9.6 105 2-109 3-115 (190)
220 PRK12377 putative replication 97.4 0.00067 1.5E-08 60.5 8.7 83 3-95 103-188 (248)
221 PLN02840 tRNA dimethylallyltra 97.4 0.00029 6.4E-09 67.1 6.6 27 2-28 22-48 (421)
222 COG2256 MGS1 ATPase related to 97.4 0.00081 1.7E-08 63.0 8.9 26 3-28 50-75 (436)
223 PF00448 SRP54: SRP54-type pro 97.4 0.0011 2.5E-08 57.0 9.3 37 2-40 2-38 (196)
224 cd01394 radB RadB. The archaea 97.4 0.0019 4.1E-08 56.2 10.8 35 3-39 21-55 (218)
225 COG0541 Ffh Signal recognition 97.4 0.0019 4.2E-08 61.1 11.4 106 3-111 102-223 (451)
226 smart00382 AAA ATPases associa 97.4 0.00012 2.7E-09 57.4 3.0 37 2-40 3-39 (148)
227 TIGR03420 DnaA_homol_Hda DnaA 97.4 0.0039 8.4E-08 54.3 12.7 25 3-27 40-64 (226)
228 PRK12422 chromosomal replicati 97.4 0.0054 1.2E-07 59.4 14.4 33 4-38 144-176 (445)
229 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00016 3.4E-09 67.6 3.6 26 2-27 79-104 (361)
230 PRK14088 dnaA chromosomal repl 97.3 0.0061 1.3E-07 59.0 14.4 35 4-38 133-167 (440)
231 PF03205 MobB: Molybdopterin g 97.3 0.00045 9.8E-09 56.2 5.5 28 2-29 1-28 (140)
232 COG2805 PilT Tfp pilus assembl 97.3 0.00044 9.6E-09 62.5 5.7 94 3-106 127-227 (353)
233 PF00308 Bac_DnaA: Bacterial d 97.3 0.0023 4.9E-08 56.1 10.1 36 3-38 36-71 (219)
234 CHL00195 ycf46 Ycf46; Provisio 97.3 0.002 4.4E-08 63.0 10.7 26 3-28 261-286 (489)
235 PRK05973 replicative DNA helic 97.3 0.0013 2.8E-08 58.2 8.5 34 3-38 66-99 (237)
236 PHA03134 thymidine kinase; Pro 97.3 0.0067 1.4E-07 56.0 13.3 41 103-144 165-205 (340)
237 TIGR01241 FtsH_fam ATP-depende 97.3 0.0031 6.8E-08 61.9 12.0 24 4-27 91-114 (495)
238 TIGR00362 DnaA chromosomal rep 97.3 0.0041 9E-08 59.4 12.6 36 3-38 138-173 (405)
239 PF13521 AAA_28: AAA domain; P 97.3 0.00017 3.7E-09 59.9 2.7 21 4-24 2-22 (163)
240 PRK00440 rfc replication facto 97.3 0.0091 2E-07 54.7 14.4 26 2-27 39-64 (319)
241 PRK00149 dnaA chromosomal repl 97.3 0.0025 5.4E-08 61.8 11.2 36 3-38 150-185 (450)
242 TIGR00959 ffh signal recogniti 97.3 0.0024 5.2E-08 61.4 10.7 37 3-40 101-137 (428)
243 PF03029 ATP_bind_1: Conserved 97.3 0.00025 5.4E-09 63.0 3.8 30 6-37 1-30 (238)
244 PRK10867 signal recognition pa 97.3 0.0024 5.1E-08 61.5 10.6 37 3-40 102-138 (433)
245 KOG1534 Putative transcription 97.3 0.0013 2.8E-08 56.6 7.8 36 3-38 5-40 (273)
246 KOG3078 Adenylate kinase [Nucl 97.3 0.00047 1E-08 60.5 5.2 112 4-124 18-140 (235)
247 PRK14493 putative bifunctional 97.2 0.00039 8.5E-09 62.9 4.8 29 1-29 1-29 (274)
248 PF05496 RuvB_N: Holliday junc 97.2 0.00026 5.6E-09 61.8 3.5 27 2-28 51-77 (233)
249 PHA02544 44 clamp loader, smal 97.2 0.0052 1.1E-07 56.5 12.3 24 3-26 45-68 (316)
250 PF13245 AAA_19: Part of AAA d 97.2 0.00033 7.2E-09 50.8 3.4 24 2-25 11-35 (76)
251 PF02224 Cytidylate_kin: Cytid 97.2 0.00098 2.1E-08 55.0 6.4 106 57-181 46-157 (157)
252 PRK14962 DNA polymerase III su 97.2 0.0042 9.1E-08 60.6 11.8 25 3-27 38-62 (472)
253 COG1341 Predicted GTPase or GT 97.2 0.0047 1E-07 58.1 11.6 110 2-113 74-212 (398)
254 PRK06526 transposase; Provisio 97.2 0.0011 2.4E-08 59.4 7.2 104 3-117 100-207 (254)
255 PRK08116 hypothetical protein; 97.2 0.0018 3.9E-08 58.5 8.6 33 4-38 117-149 (268)
256 TIGR03689 pup_AAA proteasome A 97.2 0.0027 5.9E-08 62.2 10.1 24 4-27 219-242 (512)
257 PF02492 cobW: CobW/HypB/UreG, 97.2 0.00051 1.1E-08 58.0 4.5 22 2-23 1-22 (178)
258 PRK14722 flhF flagellar biosyn 97.2 0.0052 1.1E-07 58.0 11.5 38 3-40 139-176 (374)
259 PRK14956 DNA polymerase III su 97.2 0.0048 1E-07 59.9 11.5 26 3-28 42-67 (484)
260 PRK13695 putative NTPase; Prov 97.1 0.0065 1.4E-07 50.9 11.1 24 3-26 2-25 (174)
261 PF03308 ArgK: ArgK protein; 97.1 0.00054 1.2E-08 60.9 4.6 38 2-39 30-67 (266)
262 PHA03135 thymidine kinase; Pro 97.1 0.0079 1.7E-07 55.6 12.3 40 103-143 161-200 (343)
263 PF07728 AAA_5: AAA domain (dy 97.1 0.0004 8.7E-09 55.9 3.5 24 4-27 2-25 (139)
264 PRK09435 membrane ATPase/prote 97.1 0.00054 1.2E-08 63.6 4.6 38 2-39 57-94 (332)
265 PRK13900 type IV secretion sys 97.1 0.0049 1.1E-07 57.4 11.0 34 3-39 162-195 (332)
266 cd01130 VirB11-like_ATPase Typ 97.1 0.0041 8.9E-08 52.9 9.7 25 3-27 27-51 (186)
267 PRK14086 dnaA chromosomal repl 97.1 0.0052 1.1E-07 61.3 11.7 35 4-38 317-351 (617)
268 TIGR03598 GTPase_YsxC ribosome 97.1 0.0036 7.8E-08 52.6 9.2 24 1-24 18-41 (179)
269 PRK14494 putative molybdopteri 97.1 0.00058 1.2E-08 60.1 4.4 29 1-29 1-29 (229)
270 PRK06645 DNA polymerase III su 97.1 0.0099 2.1E-07 58.4 13.4 26 3-28 45-70 (507)
271 KOG0991 Replication factor C, 97.1 0.00086 1.9E-08 58.7 5.3 26 1-26 48-73 (333)
272 PRK14963 DNA polymerase III su 97.1 0.007 1.5E-07 59.5 12.2 25 3-27 38-62 (504)
273 COG1855 ATPase (PilT family) [ 97.1 0.0004 8.7E-09 65.9 3.3 25 4-28 266-290 (604)
274 TIGR00150 HI0065_YjeE ATPase, 97.1 0.00049 1.1E-08 55.4 3.5 26 3-28 24-49 (133)
275 COG1763 MobB Molybdopterin-gua 97.1 0.0009 2E-08 55.6 5.1 30 1-30 2-31 (161)
276 COG0466 Lon ATP-dependent Lon 97.1 0.0007 1.5E-08 67.6 5.0 68 2-80 351-424 (782)
277 PLN02796 D-glycerate 3-kinase 97.1 0.00075 1.6E-08 62.7 5.0 26 3-28 102-127 (347)
278 PRK12724 flagellar biosynthesi 97.1 0.0019 4.1E-08 61.6 7.7 38 3-41 225-262 (432)
279 PRK13764 ATPase; Provisional 97.0 0.0079 1.7E-07 60.1 12.2 35 3-39 259-293 (602)
280 cd01983 Fer4_NifH The Fer4_Nif 97.0 0.00091 2E-08 49.4 4.3 34 3-38 1-34 (99)
281 PRK14964 DNA polymerase III su 97.0 0.012 2.6E-07 57.6 13.0 26 3-28 37-62 (491)
282 PF03266 NTPase_1: NTPase; In 97.0 0.00058 1.3E-08 57.3 3.5 24 4-27 2-25 (168)
283 PF00910 RNA_helicase: RNA hel 97.0 0.00052 1.1E-08 53.0 2.9 25 4-28 1-25 (107)
284 PRK09183 transposase/IS protei 97.0 0.0032 7E-08 56.6 8.4 34 3-38 104-137 (259)
285 KOG0733 Nuclear AAA ATPase (VC 97.0 0.0037 8.1E-08 61.5 9.1 25 4-28 226-250 (802)
286 TIGR02782 TrbB_P P-type conjug 97.0 0.0029 6.3E-08 58.1 8.1 37 3-39 134-170 (299)
287 TIGR01243 CDC48 AAA family ATP 97.0 0.0064 1.4E-07 62.6 11.5 24 4-27 490-513 (733)
288 PRK13894 conjugal transfer ATP 97.0 0.0087 1.9E-07 55.4 11.2 37 3-39 150-186 (319)
289 KOG0730 AAA+-type ATPase [Post 97.0 0.0056 1.2E-07 60.7 10.3 135 2-143 469-634 (693)
290 PRK14961 DNA polymerase III su 97.0 0.011 2.4E-07 55.7 12.2 25 3-27 40-64 (363)
291 COG1703 ArgK Putative periplas 97.0 0.00083 1.8E-08 60.7 4.2 38 2-39 52-89 (323)
292 PRK14952 DNA polymerase III su 97.0 0.029 6.3E-07 56.1 15.5 25 3-27 37-61 (584)
293 TIGR02012 tigrfam_recA protein 97.0 0.0062 1.3E-07 56.3 10.0 37 2-40 56-92 (321)
294 PRK14955 DNA polymerase III su 97.0 0.026 5.7E-07 53.9 14.7 26 3-28 40-65 (397)
295 PRK08181 transposase; Validate 97.0 0.0031 6.8E-08 56.9 7.9 121 3-140 108-232 (269)
296 TIGR02881 spore_V_K stage V sp 97.0 0.00065 1.4E-08 61.0 3.4 25 3-27 44-68 (261)
297 TIGR03499 FlhF flagellar biosy 97.0 0.003 6.4E-08 57.5 7.8 38 3-40 196-233 (282)
298 COG3911 Predicted ATPase [Gene 96.9 0.0016 3.5E-08 53.0 5.1 24 1-24 9-32 (183)
299 KOG0780 Signal recognition par 96.9 0.0067 1.5E-07 56.7 9.7 112 2-114 102-227 (483)
300 PRK05201 hslU ATP-dependent pr 96.9 0.0019 4.2E-08 61.5 6.4 26 3-28 52-77 (443)
301 TIGR00176 mobB molybdopterin-g 96.9 0.0012 2.6E-08 54.6 4.5 33 3-37 1-33 (155)
302 PRK14960 DNA polymerase III su 96.9 0.013 2.8E-07 59.0 12.3 26 3-28 39-64 (702)
303 PF01695 IstB_IS21: IstB-like 96.9 0.0014 3.1E-08 55.5 5.0 33 4-38 50-82 (178)
304 cd00984 DnaB_C DnaB helicase C 96.9 0.012 2.6E-07 51.8 11.2 35 3-38 15-49 (242)
305 PLN03046 D-glycerate 3-kinase; 96.9 0.0012 2.6E-08 62.7 5.0 26 3-28 214-239 (460)
306 PRK14489 putative bifunctional 96.9 0.0014 2.9E-08 62.0 5.3 29 1-29 205-233 (366)
307 PRK07764 DNA polymerase III su 96.9 0.011 2.5E-07 61.2 12.4 26 3-28 39-64 (824)
308 PRK11889 flhF flagellar biosyn 96.9 0.0075 1.6E-07 57.2 10.1 37 3-41 243-279 (436)
309 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0053 1.1E-07 55.3 8.9 35 3-39 82-116 (264)
310 cd04163 Era Era subfamily. Er 96.9 0.012 2.6E-07 47.6 10.2 23 2-24 4-26 (168)
311 PRK08099 bifunctional DNA-bind 96.9 0.00081 1.8E-08 64.1 3.6 27 1-27 219-245 (399)
312 PRK07952 DNA replication prote 96.9 0.0028 6.1E-08 56.4 6.8 34 3-38 101-134 (244)
313 TIGR00750 lao LAO/AO transport 96.9 0.0012 2.7E-08 60.5 4.6 28 1-28 34-61 (300)
314 cd02034 CooC The accessory pro 96.9 0.0016 3.6E-08 51.1 4.7 35 4-40 2-36 (116)
315 PRK12727 flagellar biosynthesi 96.9 0.018 3.9E-07 56.6 12.7 38 3-40 352-389 (559)
316 PRK05896 DNA polymerase III su 96.8 0.04 8.7E-07 55.0 15.1 26 3-28 40-65 (605)
317 TIGR02525 plasmid_TraJ plasmid 96.8 0.0078 1.7E-07 56.9 9.6 37 3-39 151-187 (372)
318 PRK12723 flagellar biosynthesi 96.8 0.008 1.7E-07 57.1 9.8 38 3-40 176-215 (388)
319 cd01393 recA_like RecA is a b 96.8 0.015 3.2E-07 50.7 10.9 23 3-25 21-43 (226)
320 cd01121 Sms Sms (bacterial rad 96.8 0.0088 1.9E-07 56.6 10.0 34 3-38 84-117 (372)
321 TIGR01420 pilT_fam pilus retra 96.8 0.005 1.1E-07 57.6 8.2 36 3-39 124-159 (343)
322 PRK13342 recombination factor 96.8 0.0044 9.5E-08 59.5 7.9 26 2-27 37-62 (413)
323 PF13401 AAA_22: AAA domain; P 96.8 0.0012 2.6E-08 52.2 3.4 25 3-27 6-30 (131)
324 PRK14087 dnaA chromosomal repl 96.8 0.023 5.1E-07 55.1 13.0 113 4-124 144-265 (450)
325 PRK07003 DNA polymerase III su 96.8 0.016 3.4E-07 59.1 12.0 26 3-28 40-65 (830)
326 KOG1532 GTPase XAB1, interacts 96.8 0.0049 1.1E-07 55.1 7.5 27 2-28 20-46 (366)
327 PHA02575 1 deoxynucleoside mon 96.8 0.00091 2E-08 58.3 2.9 23 3-25 2-24 (227)
328 PRK14495 putative molybdopteri 96.8 0.002 4.2E-08 61.6 5.3 30 1-30 1-30 (452)
329 PRK14957 DNA polymerase III su 96.8 0.024 5.2E-07 56.2 13.0 25 3-27 40-64 (546)
330 TIGR00073 hypB hydrogenase acc 96.8 0.0014 3E-08 56.7 3.9 27 1-27 22-48 (207)
331 PRK10416 signal recognition pa 96.8 0.0018 3.9E-08 59.9 4.9 36 3-40 116-151 (318)
332 PRK14949 DNA polymerase III su 96.8 0.015 3.3E-07 60.2 11.9 26 3-28 40-65 (944)
333 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.011 2.5E-07 52.2 9.8 35 2-38 22-56 (237)
334 PRK14958 DNA polymerase III su 96.8 0.021 4.5E-07 56.3 12.5 26 3-28 40-65 (509)
335 TIGR03015 pepcterm_ATPase puta 96.8 0.0011 2.5E-08 59.3 3.3 26 2-27 44-69 (269)
336 cd02037 MRP-like MRP (Multiple 96.7 0.0079 1.7E-07 50.1 8.2 77 3-85 2-79 (169)
337 TIGR00390 hslU ATP-dependent p 96.7 0.004 8.7E-08 59.3 7.0 26 3-28 49-74 (441)
338 COG0324 MiaA tRNA delta(2)-iso 96.7 0.0043 9.4E-08 56.8 6.9 28 1-28 3-30 (308)
339 cd01876 YihA_EngB The YihA (En 96.7 0.016 3.5E-07 46.9 9.8 19 4-22 2-20 (170)
340 TIGR02397 dnaX_nterm DNA polym 96.7 0.031 6.8E-07 52.1 12.9 25 3-27 38-62 (355)
341 COG1484 DnaC DNA replication p 96.7 0.0014 3.1E-08 58.7 3.6 72 4-85 108-179 (254)
342 PF03796 DnaB_C: DnaB-like hel 96.7 0.018 4E-07 51.4 10.9 36 3-39 21-56 (259)
343 TIGR01243 CDC48 AAA family ATP 96.7 0.013 2.8E-07 60.4 11.1 25 3-27 214-238 (733)
344 PRK12323 DNA polymerase III su 96.7 0.021 4.5E-07 57.4 12.0 25 3-27 40-64 (700)
345 PF13191 AAA_16: AAA ATPase do 96.7 0.0014 3.1E-08 54.9 3.3 27 2-28 25-51 (185)
346 TIGR02237 recomb_radB DNA repa 96.7 0.0026 5.7E-08 54.8 5.0 37 2-40 13-49 (209)
347 KOG0738 AAA+-type ATPase [Post 96.7 0.021 4.6E-07 53.6 11.0 24 4-27 248-271 (491)
348 PRK04195 replication factor C 96.7 0.01 2.2E-07 58.1 9.7 26 2-27 40-65 (482)
349 PRK12726 flagellar biosynthesi 96.7 0.018 4E-07 54.3 10.7 38 2-41 207-244 (407)
350 PLN00020 ribulose bisphosphate 96.7 0.0057 1.2E-07 57.4 7.3 68 3-81 150-220 (413)
351 PF02367 UPF0079: Uncharacteri 96.7 0.0021 4.5E-08 51.1 3.8 27 2-28 16-42 (123)
352 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.038 8.2E-07 44.9 11.3 101 3-115 28-130 (144)
353 PRK14959 DNA polymerase III su 96.6 0.033 7.2E-07 55.9 12.9 26 2-27 39-64 (624)
354 PRK14490 putative bifunctional 96.6 0.0032 7E-08 59.5 5.6 27 2-28 6-32 (369)
355 TIGR01526 nadR_NMN_Atrans nico 96.6 0.0017 3.7E-08 60.3 3.7 27 1-27 162-188 (325)
356 PRK14950 DNA polymerase III su 96.6 0.06 1.3E-06 54.1 14.9 25 3-27 40-64 (585)
357 PRK04328 hypothetical protein; 96.6 0.015 3.3E-07 51.8 9.6 34 3-38 25-58 (249)
358 PRK13833 conjugal transfer pro 96.6 0.0027 5.9E-08 58.8 4.9 37 3-39 146-182 (323)
359 cd01124 KaiC KaiC is a circadi 96.6 0.0024 5.1E-08 53.8 4.2 34 3-38 1-34 (187)
360 TIGR01650 PD_CobS cobaltochela 96.6 0.0017 3.6E-08 60.1 3.4 25 4-28 67-91 (327)
361 CHL00176 ftsH cell division pr 96.6 0.03 6.6E-07 56.6 12.6 25 3-27 218-242 (638)
362 CHL00181 cbbX CbbX; Provisiona 96.6 0.0017 3.8E-08 59.2 3.5 25 3-27 61-85 (287)
363 KOG2004 Mitochondrial ATP-depe 96.6 0.0024 5.2E-08 63.8 4.5 28 2-29 439-466 (906)
364 TIGR00416 sms DNA repair prote 96.6 0.016 3.5E-07 56.2 10.3 35 2-38 95-129 (454)
365 PRK13886 conjugal transfer pro 96.6 0.017 3.8E-07 51.2 9.5 104 3-109 5-122 (241)
366 cd03114 ArgK-like The function 96.6 0.0026 5.6E-08 52.2 4.1 34 3-38 1-34 (148)
367 TIGR00678 holB DNA polymerase 96.6 0.031 6.7E-07 47.4 10.8 26 2-27 15-40 (188)
368 PRK05703 flhF flagellar biosyn 96.6 0.02 4.4E-07 55.1 10.7 38 3-41 223-261 (424)
369 TIGR00763 lon ATP-dependent pr 96.6 0.0026 5.6E-08 65.9 4.8 27 2-28 348-374 (775)
370 PF10662 PduV-EutP: Ethanolami 96.6 0.0019 4.1E-08 52.6 3.0 24 1-24 1-24 (143)
371 PF07726 AAA_3: ATPase family 96.6 0.0012 2.6E-08 52.7 1.8 25 4-28 2-26 (131)
372 PF04665 Pox_A32: Poxvirus A32 96.6 0.034 7.4E-07 49.3 11.1 26 3-28 15-40 (241)
373 COG1126 GlnQ ABC-type polar am 96.6 0.0019 4E-08 56.0 3.0 20 3-22 30-49 (240)
374 PF00437 T2SE: Type II/IV secr 96.5 0.0029 6.2E-08 57.0 4.5 124 2-139 128-257 (270)
375 COG0470 HolB ATPase involved i 96.5 0.024 5.1E-07 52.0 10.7 25 4-28 27-51 (325)
376 PRK00093 GTP-binding protein D 96.5 0.015 3.3E-07 56.0 9.8 24 1-24 1-24 (435)
377 PRK08691 DNA polymerase III su 96.5 0.035 7.6E-07 56.2 12.4 26 3-28 40-65 (709)
378 PRK09354 recA recombinase A; P 96.5 0.022 4.8E-07 53.2 10.3 37 2-40 61-97 (349)
379 PRK10787 DNA-binding ATP-depen 96.5 0.0031 6.8E-08 65.1 5.1 27 2-28 350-376 (784)
380 TIGR02640 gas_vesic_GvpN gas v 96.5 0.0021 4.5E-08 57.8 3.4 24 4-27 24-47 (262)
381 PRK08939 primosomal protein Dn 96.5 0.026 5.5E-07 52.0 10.5 105 4-119 159-269 (306)
382 PRK08903 DnaA regulatory inact 96.5 0.0033 7.1E-08 55.1 4.5 34 3-38 44-77 (227)
383 TIGR03881 KaiC_arch_4 KaiC dom 96.5 0.023 5.1E-07 49.6 9.9 34 3-38 22-55 (229)
384 TIGR00635 ruvB Holliday juncti 96.5 0.0022 4.7E-08 58.7 3.4 25 3-27 32-56 (305)
385 cd00983 recA RecA is a bacter 96.5 0.011 2.5E-07 54.7 8.1 35 3-39 57-91 (325)
386 PRK15455 PrkA family serine pr 96.5 0.0019 4.2E-08 63.7 3.1 27 2-28 104-130 (644)
387 TIGR02524 dot_icm_DotB Dot/Icm 96.5 0.015 3.2E-07 54.7 9.0 25 3-27 136-160 (358)
388 PRK14969 DNA polymerase III su 96.5 0.035 7.7E-07 55.0 12.0 25 3-27 40-64 (527)
389 KOG0741 AAA+-type ATPase [Post 96.5 0.023 5E-07 55.2 10.2 67 4-82 541-607 (744)
390 PF06564 YhjQ: YhjQ protein; 96.5 0.097 2.1E-06 46.5 13.6 37 1-39 1-38 (243)
391 PRK06835 DNA replication prote 96.5 0.017 3.6E-07 53.8 9.2 34 3-38 185-218 (329)
392 PF07724 AAA_2: AAA domain (Cd 96.5 0.0035 7.5E-08 52.8 4.1 25 2-26 4-28 (171)
393 PRK00080 ruvB Holliday junctio 96.5 0.0022 4.8E-08 59.5 3.3 26 2-27 52-77 (328)
394 PRK09111 DNA polymerase III su 96.5 0.045 9.8E-07 54.9 12.7 26 3-28 48-73 (598)
395 PRK06647 DNA polymerase III su 96.4 0.049 1.1E-06 54.4 12.8 25 3-27 40-64 (563)
396 PRK14954 DNA polymerase III su 96.4 0.1 2.2E-06 52.6 15.1 26 3-28 40-65 (620)
397 cd01122 GP4d_helicase GP4d_hel 96.4 0.02 4.3E-07 51.4 9.3 35 3-38 32-66 (271)
398 PRK09361 radB DNA repair and r 96.4 0.0045 9.7E-08 54.1 4.9 37 2-40 24-60 (225)
399 KOG1969 DNA replication checkp 96.4 0.0088 1.9E-07 60.0 7.3 26 2-27 327-352 (877)
400 TIGR02880 cbbX_cfxQ probable R 96.4 0.0026 5.6E-08 58.0 3.4 26 3-28 60-85 (284)
401 cd00544 CobU Adenosylcobinamid 96.4 0.0024 5.1E-08 53.7 3.0 23 3-25 1-23 (169)
402 PLN03187 meiotic recombination 96.4 0.041 8.9E-07 51.5 11.4 39 2-40 127-169 (344)
403 cd03222 ABC_RNaseL_inhibitor T 96.4 0.022 4.8E-07 48.2 8.9 104 3-114 27-134 (177)
404 PRK07940 DNA polymerase III su 96.4 0.049 1.1E-06 51.9 12.2 26 3-28 38-63 (394)
405 PRK14723 flhF flagellar biosyn 96.4 0.036 7.8E-07 56.8 11.8 39 3-41 187-225 (767)
406 PF03215 Rad17: Rad17 cell cyc 96.4 0.0026 5.7E-08 62.6 3.6 27 2-28 46-72 (519)
407 TIGR02238 recomb_DMC1 meiotic 96.4 0.04 8.7E-07 50.9 11.2 39 2-40 97-139 (313)
408 cd03112 CobW_like The function 96.4 0.0026 5.7E-08 52.7 3.1 24 2-25 1-24 (158)
409 PRK14965 DNA polymerase III su 96.4 0.055 1.2E-06 54.2 13.0 26 3-28 40-65 (576)
410 cd00881 GTP_translation_factor 96.4 0.06 1.3E-06 44.8 11.5 23 4-26 2-24 (189)
411 KOG0707 Guanylate kinase [Nucl 96.4 0.014 2.9E-07 51.0 7.4 124 3-139 39-183 (231)
412 PRK14948 DNA polymerase III su 96.4 0.047 1E-06 55.1 12.4 26 2-27 39-64 (620)
413 TIGR03708 poly_P_AMP_trns poly 96.4 0.16 3.4E-06 49.7 15.5 144 3-162 301-473 (493)
414 KOG0733 Nuclear AAA ATPase (VC 96.4 0.012 2.6E-07 58.1 7.7 24 4-27 548-571 (802)
415 COG0378 HypB Ni2+-binding GTPa 96.4 0.0048 1E-07 52.6 4.4 28 1-28 13-40 (202)
416 PRK07994 DNA polymerase III su 96.4 0.039 8.5E-07 55.7 11.6 26 3-28 40-65 (647)
417 PRK03003 GTP-binding protein D 96.4 0.02 4.4E-07 55.9 9.4 109 1-111 38-157 (472)
418 cd01918 HprK_C HprK/P, the bif 96.3 0.0031 6.7E-08 51.8 3.0 21 4-24 17-37 (149)
419 COG0467 RAD55 RecA-superfamily 96.3 0.027 5.9E-07 50.4 9.4 34 3-38 25-58 (260)
420 TIGR01223 Pmev_kin_anim phosph 96.3 0.055 1.2E-06 45.5 10.4 113 3-122 1-135 (182)
421 COG5324 Uncharacterized conser 96.3 0.093 2E-06 50.5 13.0 156 3-181 376-547 (758)
422 TIGR02788 VirB11 P-type DNA tr 96.3 0.048 1E-06 50.2 11.1 34 3-39 146-179 (308)
423 COG3172 NadR Predicted ATPase/ 96.3 0.0037 8.1E-08 51.5 3.3 27 1-27 8-34 (187)
424 PRK03992 proteasome-activating 96.3 0.003 6.6E-08 60.1 3.3 24 4-27 168-191 (389)
425 PRK06851 hypothetical protein; 96.3 0.0059 1.3E-07 57.4 5.1 27 2-28 31-57 (367)
426 PF08477 Miro: Miro-like prote 96.3 0.0038 8.2E-08 48.4 3.3 22 4-25 2-23 (119)
427 PF01443 Viral_helicase1: Vira 96.3 0.0027 5.9E-08 55.5 2.7 22 4-25 1-22 (234)
428 PF06745 KaiC: KaiC; InterPro 96.3 0.021 4.7E-07 49.8 8.3 34 3-38 21-55 (226)
429 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.0057 1.2E-07 54.9 4.7 34 3-38 38-71 (259)
430 cd00820 PEPCK_HprK Phosphoenol 96.3 0.0037 8E-08 48.3 2.9 20 3-22 17-36 (107)
431 PRK13851 type IV secretion sys 96.3 0.0045 9.7E-08 57.9 4.0 34 3-39 164-197 (344)
432 COG0464 SpoVK ATPases of the A 96.2 0.028 6E-07 55.2 9.8 26 3-28 278-303 (494)
433 TIGR00101 ureG urease accessor 96.2 0.0046 9.9E-08 53.3 3.8 26 2-27 2-27 (199)
434 TIGR01618 phage_P_loop phage n 96.2 0.0029 6.4E-08 55.3 2.5 21 2-22 13-33 (220)
435 COG0593 DnaA ATPase involved i 96.2 0.092 2E-06 50.0 12.7 37 3-39 115-151 (408)
436 PRK05342 clpX ATP-dependent pr 96.2 0.004 8.6E-08 59.7 3.6 26 3-28 110-135 (412)
437 PF01926 MMR_HSR1: 50S ribosom 96.2 0.0041 8.8E-08 48.3 3.0 20 4-23 2-21 (116)
438 PF13479 AAA_24: AAA domain 96.2 0.017 3.7E-07 50.3 7.2 19 3-21 5-23 (213)
439 cd03216 ABC_Carb_Monos_I This 96.2 0.064 1.4E-06 44.5 10.5 107 3-114 28-144 (163)
440 PRK14970 DNA polymerase III su 96.2 0.042 9.1E-07 51.7 10.4 27 2-28 40-66 (367)
441 PF13555 AAA_29: P-loop contai 96.2 0.0064 1.4E-07 42.1 3.6 24 2-25 24-47 (62)
442 PF13604 AAA_30: AAA domain; P 96.2 0.0068 1.5E-07 52.1 4.6 34 3-38 20-53 (196)
443 PF09848 DUF2075: Uncharacteri 96.2 0.039 8.4E-07 51.8 10.1 24 2-25 2-25 (352)
444 TIGR01242 26Sp45 26S proteasom 96.2 0.0037 8E-08 58.9 3.1 25 3-27 158-182 (364)
445 PRK08451 DNA polymerase III su 96.2 0.081 1.8E-06 52.3 12.5 25 3-27 38-62 (535)
446 PRK14491 putative bifunctional 96.2 0.0075 1.6E-07 60.5 5.4 31 1-31 10-40 (597)
447 PRK07133 DNA polymerase III su 96.2 0.085 1.8E-06 53.8 12.9 26 3-28 42-67 (725)
448 PRK06305 DNA polymerase III su 96.2 0.069 1.5E-06 51.9 11.8 25 3-27 41-65 (451)
449 TIGR00382 clpX endopeptidase C 96.2 0.004 8.6E-08 59.6 3.2 25 3-27 118-142 (413)
450 PF13086 AAA_11: AAA domain; P 96.1 0.0049 1.1E-07 53.3 3.5 23 3-25 19-41 (236)
451 TIGR00665 DnaB replicative DNA 96.1 0.062 1.3E-06 51.8 11.5 35 3-38 197-231 (434)
452 PRK10463 hydrogenase nickel in 96.1 0.0053 1.2E-07 55.8 3.8 26 2-27 105-130 (290)
453 PHA03138 thymidine kinase; Pro 96.1 0.1 2.2E-06 48.4 12.1 35 3-39 14-48 (340)
454 PF01078 Mg_chelatase: Magnesi 96.1 0.0036 7.9E-08 54.0 2.4 24 4-27 25-48 (206)
455 cd02040 NifH NifH gene encodes 96.1 0.0082 1.8E-07 53.8 4.8 38 1-40 1-38 (270)
456 PRK06731 flhF flagellar biosyn 96.1 0.11 2.5E-06 46.9 12.1 36 2-39 76-111 (270)
457 COG4619 ABC-type uncharacteriz 96.1 0.0046 1E-07 51.7 2.8 24 3-26 31-54 (223)
458 COG0218 Predicted GTPase [Gene 96.1 0.065 1.4E-06 45.9 9.8 109 2-111 25-146 (200)
459 PF06068 TIP49: TIP49 C-termin 96.1 0.012 2.5E-07 55.2 5.6 25 3-27 52-76 (398)
460 COG4240 Predicted kinase [Gene 96.0 0.0067 1.5E-07 52.9 3.7 27 3-29 52-78 (300)
461 PRK05636 replicative DNA helic 96.0 0.062 1.3E-06 52.9 10.9 35 3-38 267-301 (505)
462 cd01894 EngA1 EngA1 subfamily. 96.0 0.035 7.6E-07 44.6 7.9 20 5-24 1-20 (157)
463 PRK00089 era GTPase Era; Revie 96.0 0.057 1.2E-06 49.1 10.1 21 3-23 7-27 (292)
464 PF00005 ABC_tran: ABC transpo 96.0 0.005 1.1E-07 49.1 2.8 24 3-26 13-36 (137)
465 PTZ00454 26S protease regulato 96.0 0.005 1.1E-07 58.8 3.2 25 3-27 181-205 (398)
466 PRK05563 DNA polymerase III su 96.0 0.088 1.9E-06 52.6 12.0 26 3-28 40-65 (559)
467 PRK14953 DNA polymerase III su 96.0 0.15 3.2E-06 50.1 13.4 25 3-27 40-64 (486)
468 cd01887 IF2_eIF5B IF2/eIF5B (i 96.0 0.0053 1.1E-07 50.3 2.9 23 2-24 1-23 (168)
469 PRK11331 5-methylcytosine-spec 96.0 0.0055 1.2E-07 59.0 3.4 25 3-27 196-220 (459)
470 PF00009 GTP_EFTU: Elongation 96.0 0.062 1.3E-06 45.5 9.6 40 72-111 94-133 (188)
471 PRK14951 DNA polymerase III su 96.0 0.042 9E-07 55.3 9.7 26 3-28 40-65 (618)
472 cd01852 AIG1 AIG1 (avrRpt2-ind 96.0 0.085 1.8E-06 45.0 10.3 20 4-23 3-22 (196)
473 PRK11537 putative GTP-binding 96.0 0.0056 1.2E-07 56.7 3.1 24 1-24 4-27 (318)
474 COG1474 CDC6 Cdc6-related prot 96.0 0.19 4.1E-06 47.5 13.4 139 4-145 45-206 (366)
475 PRK09169 hypothetical protein; 96.0 0.0095 2.1E-07 66.1 5.2 108 3-121 2112-2219(2316)
476 PRK10646 ADP-binding protein; 95.9 0.0074 1.6E-07 49.7 3.5 25 3-27 30-54 (153)
477 PRK06851 hypothetical protein; 95.9 0.0091 2E-07 56.2 4.5 28 2-29 215-242 (367)
478 PRK05707 DNA polymerase III su 95.9 0.14 3.1E-06 47.5 12.4 26 3-28 24-49 (328)
479 cd04105 SR_beta Signal recogni 95.9 0.026 5.7E-07 48.6 7.1 23 2-24 1-23 (203)
480 PRK08006 replicative DNA helic 95.9 0.091 2E-06 51.3 11.5 36 3-39 226-261 (471)
481 COG0802 Predicted ATPase or ki 95.9 0.0077 1.7E-07 49.2 3.4 25 3-27 27-51 (149)
482 PTZ00361 26 proteosome regulat 95.9 0.0064 1.4E-07 58.7 3.3 25 3-27 219-243 (438)
483 PRK14729 miaA tRNA delta(2)-is 95.9 0.013 2.9E-07 53.6 5.2 24 2-25 5-28 (300)
484 PRK00411 cdc6 cell division co 95.9 0.0096 2.1E-07 56.5 4.5 37 2-38 56-92 (394)
485 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.011 2.5E-07 51.7 4.7 24 2-25 20-43 (235)
486 cd04104 p47_IIGP_like p47 (47- 95.9 0.14 3.1E-06 43.7 11.4 21 3-23 3-23 (197)
487 PRK10436 hypothetical protein; 95.9 0.058 1.3E-06 52.5 9.7 74 3-81 220-294 (462)
488 TIGR00231 small_GTP small GTP- 95.9 0.007 1.5E-07 48.2 3.0 22 3-24 3-24 (161)
489 COG1136 SalX ABC-type antimicr 95.8 0.0079 1.7E-07 52.7 3.2 22 3-24 33-54 (226)
490 PRK10536 hypothetical protein; 95.8 0.038 8.3E-07 49.4 7.6 23 2-24 75-97 (262)
491 smart00173 RAS Ras subfamily o 95.8 0.0079 1.7E-07 49.2 3.1 20 4-23 3-22 (164)
492 PRK06321 replicative DNA helic 95.8 0.098 2.1E-06 51.1 11.1 35 3-38 228-262 (472)
493 PHA02244 ATPase-like protein 95.8 0.0082 1.8E-07 56.4 3.4 25 4-28 122-146 (383)
494 TIGR03600 phage_DnaB phage rep 95.8 0.11 2.4E-06 49.9 11.4 36 3-39 196-231 (421)
495 PF00931 NB-ARC: NB-ARC domain 95.8 0.0075 1.6E-07 54.4 3.1 24 2-25 20-43 (287)
496 KOG0739 AAA+-type ATPase [Post 95.8 0.1 2.2E-06 47.6 10.0 25 3-27 168-192 (439)
497 TIGR02475 CobW cobalamin biosy 95.8 0.008 1.7E-07 56.2 3.2 24 1-24 4-27 (341)
498 PHA03133 thymidine kinase; Pro 95.8 0.2 4.3E-06 46.8 12.3 35 3-40 42-76 (368)
499 PF02421 FeoB_N: Ferrous iron 95.7 0.055 1.2E-06 44.8 7.8 98 4-107 3-112 (156)
500 TIGR02533 type_II_gspE general 95.7 0.047 1E-06 53.5 8.7 35 3-39 244-278 (486)
No 1
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=100.00 E-value=5.4e-76 Score=496.02 Aligned_cols=277 Identities=54% Similarity=0.848 Sum_probs=250.0
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD 80 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD 80 (303)
||||+|||+|+|||||+|++|.+.|...+-...+.+++++.+++.+++.|.++..|+.+|+.++++++|.|+++.+||+|
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk~~iVI~D 80 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEKALRGKLRSAVDRSLSKGDIVIVD 80 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHHHHHHHHHHHHHhhcccCcEEEEe
Confidence 99999999999999999999999998875445778889999999888999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCC
Q 047717 81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCP 160 (303)
Q Consensus 81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~ 160 (303)
+.||||||||||||++|.+++.+|+||+.+|.|.|++||.+|...+++.|++++|+.|++|||+|+.+||||+|||++-+
T Consensus 81 slNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e~gy~~e~le~L~~RyEeP~s~NRWDsPLf~ll~ 160 (281)
T KOG3062|consen 81 SLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPGEDGYDDELLEALVQRYEEPNSRNRWDSPLFTLLP 160 (281)
T ss_pred cccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCCCCCCCCHHHHHHHHHHhhCCCccccccCcceEEec
Confidence 99999999999999999999999999999999999999999987666679999999999999999999999999999998
Q ss_pred CCcccccchHHHHHHHHHHHhccCCCCcccccCCCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 047717 161 YKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGIS 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~p~~~t~~~~~~~~~~l~~lD~~t~~iv~~i~~~~~~~~~~~~~~~~ 240 (303)
+++. ..+++|+++|++. ++++||+||+.+|++++||||+||++||+||..||++||..+++.+.+++
T Consensus 161 ~~~~-----~~~~~I~~al~~n--------k~~~PnqaT~~~p~s~~N~L~eLDk~tq~II~~Im~~~ks~~~~~l~vpg 227 (281)
T KOG3062|consen 161 DVIT-----LPIDDILKALFEN--------KPLPPNQATQAAPLSEANFLYELDKATQEIIKAIMEAQKSNGTALLRVPG 227 (281)
T ss_pred ccCC-----CcHHHHHHHHhcC--------CCCCCchhhhcCCcccccHHHHHHHHHHHHHHHHHHhhhccCceeEEecC
Confidence 4332 3479999999975 78999999999999999999999999999999999999866555555443
Q ss_pred cCCCCCceeeccCCCHHHHHhhHHHHHhhhcCCCCCCCCCCCChhHHHHHHHHHHHh
Q 047717 241 LGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNR 297 (303)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~r~rrqf~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~ 297 (303)
...+.+.+.+.++++||+|||||||+++|++.+ +.+.++++.+||+|||.
T Consensus 228 --t~~~~l~i~~~v~l~eL~RLRrqFI~~~~~~~~-----~t~~~q~~~lFv~yLN~ 277 (281)
T KOG3062|consen 228 --TELPPLPICRPVTLPELQRLRRQFIKLTKGQPL-----PTDLDQLKRLFVDYLNR 277 (281)
T ss_pred --CcCCCccccccccHHHHHHHHHHHHHhhcCCCC-----CCCHHHHHHHHHHHhcc
Confidence 223336667889999999999999999998754 56789999999999994
No 2
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=100.00 E-value=6.7e-67 Score=468.75 Aligned_cols=269 Identities=43% Similarity=0.742 Sum_probs=190.9
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD 80 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD 80 (303)
||||+|||+|||||||+|++|++++... +..+++++++.+++.+.. |.++..|+.+|+.+++.+.+.|+++.+||+|
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~--~~~v~~i~~~~~~~~~~~-y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~D 77 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEK--GKEVVIISDDSLGIDRND-YADSKKEKEARGSLKSAVERALSKDTIVILD 77 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHT--T--EEEE-THHHH-TTSS-S--GGGHHHHHHHHHHHHHHHHTT-SEEEE-
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhc--CCEEEEEcccccccchhh-hhchhhhHHHHHHHHHHHHHhhccCeEEEEe
Confidence 9999999999999999999999999874 577889998887765554 9999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCC
Q 047717 81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCP 160 (303)
Q Consensus 81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~ 160 (303)
++||+|||||++||+||++++++|+|||+||.+.|++||.+|... +.|++++|++|.+|||+|++++|||+|+|++++
T Consensus 78 d~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~--~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i~~ 155 (270)
T PF08433_consen 78 DNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEP--ERYPEETIDDMIQRFEEPDPKNRWDSPLFTIDS 155 (270)
T ss_dssp S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S----S-HHHHHHHHHH---TTSS-GGGS-SEEEE-
T ss_pred CCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCC--CCCCHHHHHHHHHHhcCCCCCCCccCCeEEEec
Confidence 999999999999999999999999999999999999999999862 469999999999999999999999999999996
Q ss_pred CCcccccchHHHHHHHHHHHhccCCCCcccccCCCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCC-Ccccc
Q 047717 161 YKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGG-PMNGI 239 (303)
Q Consensus 161 ~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~p~~~t~~~~~~~~~~l~~lD~~t~~iv~~i~~~~~~~~~~-~~~~~ 239 (303)
+++ ...+++|+++|.+. +.++||++|+.+|++++||||+||+.||+||++||++++.++.| .+.
T Consensus 156 ~~~-----~~~~~~I~~~l~~~--------~~~~pn~~t~~~~~~~~n~lh~lD~~tr~iv~~il~~~~~~~~~~~~~-- 220 (270)
T PF08433_consen 156 SDE-----ELPLEEIWNALFEN--------KPLPPNQATQSKPLSSTNFLHELDKITREIVSEILKAQKESGNGGKVK-- 220 (270)
T ss_dssp TTS--------HHHHHHHHHHH--------HTS--SSSTT-------HHHHHHHHHHHHHHHHHHH----HTT--HHH--
T ss_pred CCC-----CCCHHHHHHHHHhc--------CCCCCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHhhcccCCCCccc--
Confidence 433 24579999999864 67899999999999999999999999999999999999766533 333
Q ss_pred ccCCCCCceeeccCCCHHHHHhhHHHHHhhhcCCCCCCCCCCCChhHHHHHHHHHHH
Q 047717 240 SLGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLN 296 (303)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~r~rrqf~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~ 296 (303)
+++....+.+++.++++||+|||||||+++|+. ++.|.++|+.+||+|||
T Consensus 221 -~~~~~~~~~l~~~~~~~~L~rlRrqFl~~~~~~------~~~~~~~i~~~Fv~yLn 270 (270)
T PF08433_consen 221 -VPGSTLKVNLPRSVTLAELQRLRRQFLKYNKQH------PPIDVDKIARLFVQYLN 270 (270)
T ss_dssp ----------------HHHHHHHHHHHHHHHTTS------SS--HHHHHHHHHHHHH
T ss_pred -cccccccchhhhhhhHHHHHHHHHHHHHhhCCC------CCCCHHHHHHHHHHHhC
Confidence 344445688898999999999999999999932 56799999999999998
No 3
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.4e-51 Score=344.67 Aligned_cols=248 Identities=29% Similarity=0.469 Sum_probs=192.3
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCC-------ccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCC
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAK-------ETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSK 73 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~-------~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~ 73 (303)
||||+++|+|||||||+|+.|++.|...+.. +.+.++.|+++++. .+.|..+..+..+| .+.++++
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~-ke~yres~~ks~~r-lldSalk----- 73 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPIL-KEVYRESFLKSVER-LLDSALK----- 73 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchH-HHHHHHHHHHHHHH-HHHHHhc-----
Confidence 9999999999999999999999999876321 11223344445443 23555555556666 5555553
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCC
Q 047717 74 DNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDS 153 (303)
Q Consensus 74 ~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~ 153 (303)
+.+||+|++||++||||+|+|.|+...+++|+||+.||.++|.+||.+|+ +++|++++.+|++|||+|+++++||+
T Consensus 74 n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erg----epip~Evl~qly~RfEePn~~~rWDs 149 (261)
T COG4088 74 NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERG----EPIPEEVLRQLYDRFEEPNPDRRWDS 149 (261)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCC----CCCCHHHHHHHHHhhcCCCCCccccC
Confidence 78999999999999999999999999999999999999999999998775 48999999999999999999999999
Q ss_pred ceeeeCCCCcccccchHHHHHHHHHHHhccCCCCcccccCCCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCC
Q 047717 154 PLFELCPYKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALG 233 (303)
Q Consensus 154 pl~~i~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~p~~~t~~~~~~~~~~l~~lD~~t~~iv~~i~~~~~~~~~ 233 (303)
|+|++++.+.. ...++.++..+. .++| ....|+++.||..|++|+..+++..+..
T Consensus 150 pll~id~~d~~----t~~IDfiesvl~-----------~vek--------pke~n~~yvld~~tnkvi~~i~~~~ket-- 204 (261)
T COG4088 150 PLLVIDDSDVS----TEVIDFIESVLR-----------LVEK--------PKERNRRYVLDSSTNKVIVRIRQVMKET-- 204 (261)
T ss_pred ceEEEeccccc----ccchhHHHHHHH-----------hccC--------hhhcCceEecchhhHHHHHHHHHhcccc--
Confidence 99999975333 234566655444 1111 1357899999999999999999987632
Q ss_pred CCccccccCCC--CCceeeccCCCHHHHHhhHHHHHh-hhcCCCCCCCCCCCChhHHHHHHHHHHHh
Q 047717 234 GPMNGISLGQG--LPNISISRSVGLPELRRLRRTFIK-LTGQTSLSGPPPPSDADSAKRMFVDYLNR 297 (303)
Q Consensus 234 ~~~~~~~~~~~--~~~~~~~~~~~~~~l~r~rrqf~~-~~~~~~~~~~~~~~~~~~~~~~f~~~l~~ 297 (303)
+..++++ ...+++|+ +++||||||||||+ .+|+.. .+.+++..+|++|||.
T Consensus 205 ----r~ivsegi~~~q~dlp~--~L~elqrlrrqfi~~inK~~~-------~d~dr~~e~f~e~Lng 258 (261)
T COG4088 205 ----RRIVSEGIAATQLDLPR--KLSELQRLRRQFIEDINKAVR-------EDRDRAEEVFRECLNG 258 (261)
T ss_pred ----eEeeeccchhhhccccc--cHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHhcc
Confidence 1112222 12355565 89999999999999 888653 3788999999999993
No 4
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=100.00 E-value=4.4e-48 Score=345.41 Aligned_cols=249 Identities=22% Similarity=0.355 Sum_probs=203.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL 82 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~ 82 (303)
||+|+|+|||||||+|+.|++++... +.++++++.+.+...- ..|.. ..++..++.....+..++.++..||+|++
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~--~~~v~~i~~D~lr~~~-~~~~~-~~e~~~~~~~~~~i~~~l~~~~~VI~D~~ 76 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK--NIDVIILGTDLIRESF-PVWKE-KYEEFIRDSTLYLIKTALKNKYSVIVDDT 76 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc--CCceEEEccHHHHHHh-HHhhH-HhHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 69999999999999999999999754 3466676654331100 01221 23445555566677888888999999999
Q ss_pred CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCCCC
Q 047717 83 NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYK 162 (303)
Q Consensus 83 n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~ 162 (303)
|+++++|++++|+++..++++|+|||++|.++|.+|+.+|+. .++++++.++.++||+|...++|++|+|++++..
T Consensus 77 ~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~----~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~~ 152 (249)
T TIGR03574 77 NYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE----KIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDTTK 152 (249)
T ss_pred chHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC----CCCHHHHHHHHHhhCCCCCCCCccCceEEecCCC
Confidence 999999999999999999999999999999999999998853 5788999999999999999999999999998753
Q ss_pred cccccchHHHHHHHHHHHhccCCCCcccccCCCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCccccccC
Q 047717 163 DAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGISLG 242 (303)
Q Consensus 163 ~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~p~~~t~~~~~~~~~~l~~lD~~t~~iv~~i~~~~~~~~~~~~~~~~~~ 242 (303)
+ . .++++++.|++.+. .+++||++|+.+|.+++||||+||+.||+||++||++++ .
T Consensus 153 ~-~-----~~~ei~~~i~~~~~------~~~~~~~~~~~~~~~~~~~l~~ld~~~~~~i~~~~~~~~-----------~- 208 (249)
T TIGR03574 153 K-I-----DYNEILEEILEISE------NKLKIEKPKKPKRRTDENILNKIDKRTRQIVGELIKTGK-----------L- 208 (249)
T ss_pred C-C-----CHHHHHHHHHHHhh------ccCChhhhhhhcccccccHHHHHHHHHHHHHHHHHHhcc-----------C-
Confidence 2 1 24777777776421 456899999999999999999999999999999999743 1
Q ss_pred CCCCceeeccCCCHHHHHhhHHHHHhhhcCCCCCCCCCCCChhHHHHHHHHHHH
Q 047717 243 QGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLN 296 (303)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~r~rrqf~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~ 296 (303)
..++++||+|+|||||+++|++. +++.|.++|+++||+|||
T Consensus 209 ---------~~~~~~~l~~~r~~f~~~~~~~~----~~~~~~~~~~~~f~~~l~ 249 (249)
T TIGR03574 209 ---------DKELIKKLSELRKEFLKSIKDIK----AEKEDFRRVEKEFKDYLN 249 (249)
T ss_pred ---------CHHHHHHHHHHHHHHHHHhhhhh----hhhhHHHHHHHHHHHHhC
Confidence 12579999999999999998532 356689999999999997
No 5
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=100.00 E-value=2.5e-38 Score=290.85 Aligned_cols=198 Identities=19% Similarity=0.304 Sum_probs=160.7
Q ss_pred HhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCC-
Q 047717 69 RSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDR- 147 (303)
Q Consensus 69 ~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~- 147 (303)
..+++..+||+|++||++++||+++|+|+.++.++|+|||++|.++|++||.+|.. .+++++++.|.++||.|++
T Consensus 122 ~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ld~ple~~l~RN~~R~~----~v~devie~m~~r~E~P~~~ 197 (340)
T TIGR03575 122 PAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPVESCLLRNKQRPV----PLPDETIQLMGRKIEKPNPE 197 (340)
T ss_pred HHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEEeCCHHHHHHHHhcCCC----CCCHHHHHHHHHHhcCCCCC
Confidence 34466778999999999999999999999999999999999999999999999953 6899999999999999997
Q ss_pred CCCCCCceeeeCCCCcccccchHHHHHHHHHHHhccCCCCcccccCCCCcccc--cccCCCcchHHHHHHHHHHHHHHHH
Q 047717 148 RNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQ--NTRFSEANSLYELDRATQEVINAVV 225 (303)
Q Consensus 148 ~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~p~~~t~--~~~~~~~~~l~~lD~~t~~iv~~i~ 225 (303)
++|||+|+|++++..+. ......+++++..+++.. .++++||++|+ .+|++++||||+||+.||+||+++|
T Consensus 198 ~nrWd~pl~~v~~~~~~-~~~~~~~~~~~~~~~~~p------~~~~~~n~~~~~~~~~~~~~n~lh~lD~~tr~ii~~i~ 270 (340)
T TIGR03575 198 KNAWEHNSLVIQSSACI-SEDSLEVTDLLNTALENP------IKCVEENLEQKETDRIICSTNILHQADQTLRRIISQTM 270 (340)
T ss_pred CCCCCCCeEEEecCccc-cccchhHHHHHHHHHhCC------CCCCCCcccccccccCCCcccHHHHHHHHHHHHHHHHH
Confidence 99999999999985221 112346788988888531 24567899985 7889999999999999999999999
Q ss_pred HHHHhcCCCCccccccCCCCCceeeccCCCHHHHHhhHHHHHhhhcCCC---CCCCCCCCChhHHHHHH
Q 047717 226 EAQSKALGGPMNGISLGQGLPNISISRSVGLPELRRLRRTFIKLTGQTS---LSGPPPPSDADSAKRMF 291 (303)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~rrqf~~~~~~~~---~~~~~~~~~~~~~~~~f 291 (303)
++++... .+.. ..++-..+|+.+|++||+-.|... ..++....+...|...|
T Consensus 271 ~~~k~~~--------~~~~------~~~~~~~~l~~~rk~~L~~~r~~~~~~~~~~~~~~~~~~~~~~~ 325 (340)
T TIGR03575 271 REAKDEQ--------ASAY------NLKLLAEELNKLKADFLEDLRQGNCKKYLCFQQTCDLSDIISLF 325 (340)
T ss_pred HHHHhcc--------CChH------HHHHHHHHHHHHHHHHHHHHHhccccccccccccCCHHHHHHHH
Confidence 9998421 1110 023557799999999999987543 22444566788888888
No 6
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=99.84 E-value=2e-20 Score=155.89 Aligned_cols=218 Identities=17% Similarity=0.256 Sum_probs=145.0
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCc-cEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHH----------
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKE-TVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDR---------- 69 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~-~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~---------- 69 (303)
|+|+.+.|.|+|||||+++.|.-...+..+.+ ....+||..+...+ +.....+..|+.+...++.
T Consensus 1 i~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTp----SaD~a~keqRgr~~~~iEk~ISaiqedtd 76 (291)
T KOG4622|consen 1 IALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATP----SADKAAKEQRGRFECHIEKCISAIQEDTD 76 (291)
T ss_pred CceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCc----chhhhHHHHhchHHHHHHHHHHHHhcccC
Confidence 78999999999999999999875443321111 11122322111111 0111122333333322222
Q ss_pred -------hcC------CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHH
Q 047717 70 -------SVS------KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFE 136 (303)
Q Consensus 70 -------~L~------~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~ 136 (303)
.-+ ...++++|..+|++++|+.++.+|+..|.-+-+||+....+.|+++|..|... ++.+.+++.
T Consensus 77 wppqvrrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~Rsda--~k~~~dtiR 154 (291)
T KOG4622|consen 77 WPPQVRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHRSDA--EKQKNDTIR 154 (291)
T ss_pred CCchheeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhccccccc--hhCccHHHH
Confidence 111 23689999999999999999999999999999999999999999999999763 567889999
Q ss_pred HHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHHhccCCCCcccccCCCCcccccccCCCcchHHHHHHH
Q 047717 137 DLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIATQNTRFSEANSLYELDRA 216 (303)
Q Consensus 137 ~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~p~~~t~~~~~~~~~~l~~lD~~ 216 (303)
.|.++.|.|+..+.|+...+++.+.+.++. .+.+...+...+.. +........|..+....| .+++.||.||..
T Consensus 155 ki~EklE~PD~~ea~e~NSitLeg~dmd~~--geallafia~~~d~---~amet~~dl~~a~a~g~~-~d~S~l~rLDlL 228 (291)
T KOG4622|consen 155 KIFEKLEDPDEIEALEENSITLEGDDMDID--GEALLAFIAFDFDA---KAMETPEDLLKASAIGKP-PDPSKLERLDLL 228 (291)
T ss_pred HHHHhccCccHHHHHHhcceeeccccccch--HHHHHHHHHHhccC---CcccCccccchHhhcCCC-CChHHHHHHHHH
Confidence 999999999999999999999998654432 22333333333332 111111122222222222 368899999999
Q ss_pred HHHHHHHHHHHHHh
Q 047717 217 TQEVINAVVEAQSK 230 (303)
Q Consensus 217 t~~iv~~i~~~~~~ 230 (303)
+|+.|+++|+..+.
T Consensus 229 lR~~igaLldg~kq 242 (291)
T KOG4622|consen 229 LRRLIGALLDGDKQ 242 (291)
T ss_pred HHHHHHHHHccccc
Confidence 99999999986653
No 7
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.81 E-value=4.4e-19 Score=144.44 Aligned_cols=138 Identities=30% Similarity=0.466 Sum_probs=98.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc--cCCCcccc-CCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS--FHLDRNQS-YASMPAEKNLRGVLRSEVDRSVSKDNIIIV 79 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~--~~~~~~~~-y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv 79 (303)
||+|+|+|||||||+|+.|++.++.. ++..|+.. +....... .............+...+...+..|..+|+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~-----~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv 75 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAV-----VISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVV 75 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEE-----EEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCE-----EEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 79999999999999999999888632 22222211 10001111 111122333444666677788889999999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCC--CCCHHHHHHHHHHhcCC
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEA--AYDDKIFEDLVRRFEKP 145 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~--~~~~e~~~~l~~r~E~P 145 (303)
|++|+...+|..+..+++..+.++.+|+|++|.+++.+|+..|...++. .++.+.++++.++||+|
T Consensus 76 d~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~p 143 (143)
T PF13671_consen 76 DNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGDKRFEVPEEVFDRMLARFEPP 143 (143)
T ss_dssp ESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCTTS----HHHHHHHHHHHH--
T ss_pred ccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcccccccCcHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999875422 26789999999999987
No 8
>PRK06762 hypothetical protein; Provisional
Probab=99.77 E-value=1.1e-17 Score=140.10 Aligned_cols=134 Identities=16% Similarity=0.190 Sum_probs=96.5
Q ss_pred CE-EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEE
Q 047717 1 MA-LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNII 77 (303)
Q Consensus 1 M~-LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~V 77 (303)
|| +|+|+|+|||||||+|+.|++.++. .+.+++.+.+. .............. .+...+...+..|..|
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~-----~~~~i~~D~~r~~l~~~~~~~~~~~~~----~~~~~~~~~~~~g~~v 71 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGR-----GTLLVSQDVVRRDMLRVKDGPGNLSID----LIEQLVRYGLGHCEFV 71 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEecHHHHHHHhccccCCCCCcCHH----HHHHHHHHHHhCCCEE
Confidence 55 8999999999999999999999842 24444433221 10000011111111 2333444456788999
Q ss_pred EEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCC
Q 047717 78 IVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKP 145 (303)
Q Consensus 78 IvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P 145 (303)
|+|+++....+|..+..+++..+.++.+||+++|.++|.+|+.+|.. .+.++++.++.++..++.+
T Consensus 72 ild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~--~~~~~~~~l~~~~~~~~~~ 137 (166)
T PRK06762 72 ILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK--SHEFGEDDMRRWWNPHDTL 137 (166)
T ss_pred EEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc--cccCCHHHHHHHHhhcCCc
Confidence 99999888888888888888888899999999999999999999975 2457889999998887865
No 9
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.74 E-value=2.1e-17 Score=136.00 Aligned_cols=139 Identities=18% Similarity=0.098 Sum_probs=94.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHH-hcCCCCEEEEcC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDR-SVSKDNIIIVDS 81 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~-~L~~~~~VIvD~ 81 (303)
||+|+|+|||||||+|+.|++.++...++.+.+...........+..+.....+...+ .+...... .+..+..||+|+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~vVid~ 79 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQ-ALTDALLAKLASAGEGVVVAC 79 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCccchhhHHH-HHHHHHHHHHHhCCCCEEEEe
Confidence 6899999999999999999998765322211111000000000111222222233333 22222222 224778899999
Q ss_pred CCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCC
Q 047717 82 LNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDR 147 (303)
Q Consensus 82 ~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~ 147 (303)
+++.+.+|+.+.+++ .+.++.+|||+||.+++.+|+..|.. +.++.+.++.+.+.||+|+.
T Consensus 80 ~~~~~~~r~~~~~~~--~~~~~~~v~l~~~~~~~~~R~~~R~~---~~~~~~~~~~~~~~~~~p~~ 140 (150)
T cd02021 80 SALKRIYRDILRGGA--ANPRVRFVHLDGPREVLAERLAARKG---HFMPADLLDSQFETLEPPGE 140 (150)
T ss_pred ccccHHHHHHHHhcC--CCCCEEEEEEECCHHHHHHHHHhccc---CCCCHHHHHHHHHHhcCCCC
Confidence 999999999888877 67889999999999999999999964 35678899999999999886
No 10
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.72 E-value=6.4e-17 Score=148.06 Aligned_cols=136 Identities=18% Similarity=0.199 Sum_probs=102.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHH-ccccCCccEEEecCCcc-----CCCccccCCCc-hhhHHHHHHHHHHHHHhcCCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEAL-KESEAKETVRIIDEASF-----HLDRNQSYASM-PAEKNLRGVLRSEVDRSVSKD 74 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l-~~~~~~~~v~~~~~~~~-----~~~~~~~y~~~-~~e~~~r~~l~~~v~~~L~~~ 74 (303)
.+|+|+|+|||||||+|+.|++++ +. .+++.+.+ .......|... ..+...+......+...+..|
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~-------~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 75 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKA-------VNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSG 75 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCC-------EEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcC
Confidence 689999999999999999999998 33 22232211 00001112211 122233334555566677888
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCC
Q 047717 75 NIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDR 147 (303)
Q Consensus 75 ~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~ 147 (303)
..||+|+++..+.+|..+..+++..+..+.+||+++|.+++.+|+.+|+. +.+++++++.|..+++.+..
T Consensus 76 ~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~---~~~~~~~i~~~~~~~~~~~~ 145 (300)
T PHA02530 76 KSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGE---RAVPEDVLRSMFKQMKEYRG 145 (300)
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCc---CCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999954 56899999999999997654
No 11
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.69 E-value=2.7e-16 Score=152.64 Aligned_cols=130 Identities=16% Similarity=0.241 Sum_probs=106.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS 81 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~ 81 (303)
.||+|+|+|||||||+|+.++...+. .+++.+.++ .+. .+...+.++|..|..||+|+
T Consensus 370 ~LVil~G~pGSGKST~A~~l~~~~g~-------~~vn~D~lg--------------~~~-~~~~~a~~~L~~G~sVVIDa 427 (526)
T TIGR01663 370 EMVIAVGFPGAGKSHFCKKFFQPAGY-------KHVNADTLG--------------STQ-NCLTACERALDQGKRCAIDN 427 (526)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC-------eEECcHHHH--------------HHH-HHHHHHHHHHhCCCcEEEEC
Confidence 48999999999999999999887543 233332221 122 33446778899999999999
Q ss_pred CCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC--CCCCHHHHHHHHHHhcCCCCCCCCCC
Q 047717 82 LNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE--AAYDDKIFEDLVRRFEKPDRRNRWDS 153 (303)
Q Consensus 82 ~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~--~~~~~e~~~~l~~r~E~P~~~~rwd~ 153 (303)
+|..+..|..+..+|+.++.++..+|+++|.++|++||..|..... ..++++++..+..+||+|...++|+.
T Consensus 428 Tn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~s~~~vp~~v~~~~~k~fE~Pt~~EGF~~ 501 (526)
T TIGR01663 428 TNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDSAHIKIKDMVFNGMKKKFEAPALAEGFIA 501 (526)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCcccCCCCHHHHHHHHhhCCCCCcccCceE
Confidence 9999999999999999999999999999999999999999975221 24678999999999999998888874
No 12
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.67 E-value=7.6e-16 Score=127.14 Aligned_cols=162 Identities=21% Similarity=0.306 Sum_probs=110.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV 79 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv 79 (303)
.+|||+|++||||||+|.+|.+.|... +..++++|-+.+ ++.+.-.|+.......+| .+...++-....|-+||+
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~--G~~~y~LDGDnvR~gL~~dLgFs~edR~eniR-RvaevAkll~daG~iviv 100 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAK--GYHVYLLDGDNVRHGLNRDLGFSREDRIENIR-RVAEVAKLLADAGLIVIV 100 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHc--CCeEEEecChhHhhcccCCCCCChHHHHHHHH-HHHHHHHHHHHCCeEEEE
Confidence 489999999999999999999999876 567788876533 333444666555555566 343333334457888888
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH----hhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCce
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE----RHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPL 155 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~----R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl 155 (303)
-....++..|.+.+.+..+ ..+.-||++||.++|.+|.-+ +...|+ -..|..+..-||+|.. |.
T Consensus 101 a~ISP~r~~R~~aR~~~~~--~~FiEVyV~~pl~vce~RDpKGLYkKAr~Ge----I~~fTGid~pYE~P~~------Pe 168 (197)
T COG0529 101 AFISPYREDRQMARELLGE--GEFIEVYVDTPLEVCERRDPKGLYKKARAGE----IKNFTGIDSPYEAPEN------PE 168 (197)
T ss_pred EeeCccHHHHHHHHHHhCc--CceEEEEeCCCHHHHHhcCchHHHHHHHcCC----CCCCcCCCCCCCCCCC------Ce
Confidence 8777777777766654332 378999999999999999754 232221 1334556667999874 89
Q ss_pred eeeCCCCcccccchHHHHHHHHHHHh
Q 047717 156 FELCPYKDAIENSSAAILDAVAYLTK 181 (303)
Q Consensus 156 ~~i~~~~~~~~~~~~~~~ei~~~l~~ 181 (303)
+++++....+ ++..+.|+++|..
T Consensus 169 l~l~t~~~~v---ee~v~~i~~~l~~ 191 (197)
T COG0529 169 LHLDTDRNSV---EECVEQILDLLKE 191 (197)
T ss_pred eEeccccCCH---HHHHHHHHHHHHh
Confidence 9999865543 2335555555543
No 13
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.66 E-value=5.3e-16 Score=127.82 Aligned_cols=145 Identities=22% Similarity=0.297 Sum_probs=91.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV 79 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv 79 (303)
.+|||+|+|||||||+|+.|.++|... +..++++|-+.+ ++...-.|+....++.++ .+...+......|.+||+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~r-r~~~~A~ll~~~G~ivIv 79 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLDGDNLRHGLNADLGFSKEDREENIR-RIAEVAKLLADQGIIVIV 79 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEEHHHHCTTTTTT--SSHHHHHHHHH-HHHHHHHHHHHTTSEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEecCcchhhccCCCCCCCHHHHHHHHH-HHHHHHHHHHhCCCeEEE
Confidence 479999999999999999999999876 466777775432 222233455444455555 344344445578999999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH----hhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCce
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE----RHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPL 155 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~----R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl 155 (303)
.....++.+|...+...... ++..||++||.++|.+|..+ |...++ -..+..+-..||+|.. |-
T Consensus 80 a~isp~~~~R~~~R~~~~~~--~f~eVyv~~~~e~~~~RD~KglY~ka~~g~----i~~~~Gvd~~ye~P~~------pd 147 (156)
T PF01583_consen 80 AFISPYREDREWARELIPNE--RFIEVYVDCPLEVCRKRDPKGLYAKARAGE----IKNFTGVDDPYEEPLN------PD 147 (156)
T ss_dssp E----SHHHHHHHHHHHHTT--EEEEEEEES-HHHHHHHTTTSHHHHHHTTS----SSSHTTTSS-----SS-------S
T ss_pred eeccCchHHHHHHHHhCCcC--ceEEEEeCCCHHHHHHhCchhHHHHhhCCC----cCCccccccCCCCCCC------Ce
Confidence 99999999998888766543 78999999999999999753 332221 0122334456888774 78
Q ss_pred eeeCCC
Q 047717 156 FELCPY 161 (303)
Q Consensus 156 ~~i~~~ 161 (303)
++++++
T Consensus 148 l~idt~ 153 (156)
T PF01583_consen 148 LVIDTD 153 (156)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 888875
No 14
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.65 E-value=3.3e-15 Score=124.64 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=99.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC-------ccccCCCchhhHHHHHHHHHHHHHhcCCCCE
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD-------RNQSYASMPAEKNLRGVLRSEVDRSVSKDNI 76 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~-------~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~ 76 (303)
|+|+|+|||||||+|+.|++.++.. +++.+.+... .+..+.+...+..++ .+...+...+..+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~-------~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 72 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAK-------FIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQ-NLNDASTAAAAKNKV 72 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCe-------EEeCccccChHHHHHHHcCCCCChhhHHHHHH-HHHHHHHHHHhcCCC
Confidence 5799999999999999999998642 2333332110 011222222223333 334455556666777
Q ss_pred EEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCcee
Q 047717 77 IIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLF 156 (303)
Q Consensus 77 VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~ 156 (303)
+|+|.++..+.+|..+ +..+.++.+|||++|.++|.+|+..|.. +..+.+.++.....++.|...+. ..+
T Consensus 73 ~Vi~~t~~~~~~r~~~----~~~~~~~~~i~l~~~~e~~~~R~~~R~~---~~~~~~~i~~~~~~~~~~~~~e~---~~~ 142 (163)
T TIGR01313 73 GIITCSALKRHYRDIL----REAEPNLHFIYLSGDKDVILERMKARKG---HFMKADMLESQFAALEEPLADET---DVL 142 (163)
T ss_pred EEEEecccHHHHHHHH----HhcCCCEEEEEEeCCHHHHHHHHHhccC---CCCCHHHHHHHHHHhCCCCCCCC---ceE
Confidence 7888888877777544 3567788899999999999999999963 23466788888888888765331 346
Q ss_pred eeCCCCcccccchHHHHHHHHHHH
Q 047717 157 ELCPYKDAIENSSAAILDAVAYLT 180 (303)
Q Consensus 157 ~i~~~~~~~~~~~~~~~ei~~~l~ 180 (303)
+|++.... +...+.+++.|+
T Consensus 143 ~id~~~~~----~~~~~~~~~~~~ 162 (163)
T TIGR01313 143 RVDIDQPL----EGVEEDCIAVVL 162 (163)
T ss_pred EEECCCCH----HHHHHHHHHHHh
Confidence 77754221 234455555544
No 15
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.63 E-value=1.6e-14 Score=122.09 Aligned_cols=158 Identities=12% Similarity=0.035 Sum_probs=93.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccC--CccEEEecCCc-c-----CCCccc--c-CCCchhhHHHHHHHHHHHHHh
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEA--KETVRIIDEAS-F-----HLDRNQ--S-YASMPAEKNLRGVLRSEVDRS 70 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~--~~~v~~~~~~~-~-----~~~~~~--~-y~~~~~e~~~r~~l~~~v~~~ 70 (303)
.+|+|+|+|||||||+|+.|++.++...+ +.+.+...-.. . ++.-.. . +......+.+ +.+...+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~~~~~~~~ 81 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLE-GAWYEAVAAM 81 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHH-HHHHHHHHHH
Confidence 48999999999999999999999864321 11111100000 0 000000 0 1111111233 3566677788
Q ss_pred cCCCCEEEEcCCCC-chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCC
Q 047717 71 VSKDNIIIVDSLNS-IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRN 149 (303)
Q Consensus 71 L~~~~~VIvD~~n~-~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~ 149 (303)
+..|..||+|+++. ...+|..+..+ .+.++..|||.||.++|.+|+.+|+.. . ..........++.
T Consensus 82 l~~G~~VIvD~~~~~~~~~r~~~~~~---~~~~~~~v~l~~~~~~l~~R~~~R~~~----~-~~~~~~~~~~~~~----- 148 (175)
T cd00227 82 ARAGANVIADDVFLGRAALQDCWRSF---VGLDVLWVGVRCPGEVAEGRETARGDR----V-PGQARKQARVVHA----- 148 (175)
T ss_pred HhCCCcEEEeeeccCCHHHHHHHHHh---cCCCEEEEEEECCHHHHHHHHHhcCCc----c-chHHHHHHHHhcC-----
Confidence 89999999999887 55555443322 456789999999999999999998642 1 2222222222222
Q ss_pred CCCCceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717 150 RWDSPLFELCPYKDAIENSSAAILDAVAYLTK 181 (303)
Q Consensus 150 rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~ 181 (303)
|..+.++++++..+ .+++++.|.+
T Consensus 149 -~~~~dl~iDts~~s-------~~e~a~~i~~ 172 (175)
T cd00227 149 -GVEYDLEVDTTHKT-------PIECARAIAA 172 (175)
T ss_pred -CCcceEEEECCCCC-------HHHHHHHHHH
Confidence 44456888876433 3555555543
No 16
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.62 E-value=3.1e-15 Score=127.40 Aligned_cols=149 Identities=18% Similarity=0.259 Sum_probs=96.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV 79 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv 79 (303)
.+|+|+|+|||||||+|+.|...+... +..+++++.+.+. +.....|.+....+.++ .+.......+..|.+||+
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~~~--~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~VI~ 95 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLESK--GYRVYVLDGDNVRHGLNKDLGFSEEDRKENIR-RIGEVAKLFVRNGIIVIT 95 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECChHHHhhhccccCCCHHHHHHHHH-HHHHHHHHHHcCCCEEEE
Confidence 589999999999999999999998643 3345555543321 11223455444444444 333344556788999999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhc--CCCCCCHHHHHHHHHHhcCCCCCCCCCCceee
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEK--GEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFE 157 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~--~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~ 157 (303)
|+++..+.+|..+..+++. .++++|||+||.++|.+|+.++-.. ..... ..+..+...|++ |..|.++
T Consensus 96 d~~~~~~~~r~~~~~~~~~--~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~--~~l~~~~~~y~~------p~~adl~ 165 (184)
T TIGR00455 96 SFISPYRADRQMVRELIEK--GEFIEVFVDCPLEVCEQRDPKGLYKKARNGEI--KGFTGIDSPYEA------PENPEVV 165 (184)
T ss_pred ecCCCCHHHHHHHHHhCcC--CCeEEEEEeCCHHHHHHhCchhHHHHHhcCCc--cCcccccCCCCC------CCCCcEE
Confidence 9999998888777766553 3789999999999999995421000 00011 111233444554 4567899
Q ss_pred eCCCCc
Q 047717 158 LCPYKD 163 (303)
Q Consensus 158 i~~~~~ 163 (303)
|++++.
T Consensus 166 Idt~~~ 171 (184)
T TIGR00455 166 LDTDQN 171 (184)
T ss_pred EECCCC
Confidence 987643
No 17
>COG4639 Predicted kinase [General function prediction only]
Probab=99.62 E-value=5.2e-15 Score=119.74 Aligned_cols=128 Identities=21% Similarity=0.302 Sum_probs=95.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCC-c-hhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYAS-M-PAEKNLRGVLRSEVDRSVSKDNIIIV 79 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~-~-~~e~~~r~~l~~~v~~~L~~~~~VIv 79 (303)
.|++|+|.|||||||+|++. +. ...++.+++...... ...+.. + ...+.+-..+...++..|.+|...|+
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n---~~----~~~~lsld~~r~~lg-~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tii 74 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKEN---FL----QNYVLSLDDLRLLLG-VSASKENSQKNDELVWDILYKQLEQRLRRGKFTII 74 (168)
T ss_pred eEEEEecCCCCchhHHHHHh---CC----CcceecHHHHHHHhh-hchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 38999999999999999962 22 123455454322111 011111 1 11223334666778888999999999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRR 141 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r 141 (303)
|++|..+..|.++..+|+++|+....|++++|.+.|.+||..|.+ .++++++.++...
T Consensus 75 dAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~R----qv~~~VI~r~~r~ 132 (168)
T COG4639 75 DATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRER----QVPEEVIPRMLRE 132 (168)
T ss_pred EcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccch----hCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999996654 6789999988876
No 18
>COG0645 Predicted kinase [General function prediction only]
Probab=99.59 E-value=2.7e-14 Score=117.57 Aligned_cols=149 Identities=19% Similarity=0.184 Sum_probs=109.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC---CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH---LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIII 78 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~---~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VI 78 (303)
.|+++.|+|||||||+|+.|++.++...+..+++.-.-.+.. -...+.|......+.|. .+.......|+.|..||
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~-~l~~~A~l~l~~G~~VV 80 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYD-ELLGRAELLLSSGHSVV 80 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHH-HHHHHHHHHHhCCCcEE
Confidence 489999999999999999999999875322222110000100 01134677666666666 66667888999999999
Q ss_pred EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCce
Q 047717 79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPL 155 (303)
Q Consensus 79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl 155 (303)
+|+++.....|..+..+|+..+.++..|+|.+|.++...|..+|..+. ..-+-.++.....+++.+.. |+.+.
T Consensus 81 lDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~-sDA~~~il~~q~~~~~~~~~---~~~~~ 153 (170)
T COG0645 81 LDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDA-SDATFDILRVQLAEDEPWTE---WETAD 153 (170)
T ss_pred EecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCc-ccchHHHHHHHHhhhCCccc---ccchh
Confidence 999999999999999999999999999999999999999999997521 12244677777777776443 55443
No 19
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.54 E-value=5.1e-14 Score=116.07 Aligned_cols=114 Identities=19% Similarity=0.300 Sum_probs=81.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD 80 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD 80 (303)
+|+|+|.|||||||+|+.|++.+... +..+++++.+.+. +.....|.+......++ .+...+...+..|.+||+|
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~--g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~-~~~~~a~~l~~~G~~VIid 77 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQR--GRPVYVLDGDNVRHGLNKDLGFSREDREENIR-RIAEVAKLLADAGLIVIAA 77 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEEcCHHHHHhhhhccCCCcchHHHHHH-HHHHHHHHHHhCCCEEEEc
Confidence 48999999999999999999998643 2345555533221 11122454443444444 2333444556789999999
Q ss_pred CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717 81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE 121 (303)
Q Consensus 81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~ 121 (303)
+++..+.+|..+..+++ +.++++|||++|.++|.+|+.+
T Consensus 78 ~~~~~~~~R~~~~~l~~--~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 78 FISPYREDREAARKIIG--GGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred cCCCCHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhCch
Confidence 99998888877776665 6889999999999999999754
No 20
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.51 E-value=9.7e-13 Score=110.06 Aligned_cols=157 Identities=13% Similarity=0.141 Sum_probs=92.8
Q ss_pred EccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CCccccCCCchhhHHHHHHHHHHHHH-hcCCCCEEEEcCCCC
Q 047717 7 CGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LDRNQSYASMPAEKNLRGVLRSEVDR-SVSKDNIIIVDSLNS 84 (303)
Q Consensus 7 ~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~~~~~y~~~~~e~~~r~~l~~~v~~-~L~~~~~VIvD~~n~ 84 (303)
.|+|||||||+++.|++.++...++.+++.... ... ...+..|.+........ .+...+.. ....+..||+ +++.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~-~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~viv-~s~~ 77 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR-NIEKMASGEPLNDDDRKPWLQ-ALNDAAFAMQRTNKVSLIV-CSAL 77 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchh-hhccccCCCCCChhhHHHHHH-HHHHHHHHHHHcCCceEEE-Eecc
Confidence 499999999999999999975322222211000 000 00011222211111111 22222212 2234555666 7888
Q ss_pred chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCCCCcc
Q 047717 85 IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDA 164 (303)
Q Consensus 85 ~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~ 164 (303)
.+.+|.. ++..+.+++.|||+||.+++.+|+..|.. +..+.+++......+|+|...+ . -++++++.. .
T Consensus 78 ~~~~r~~----~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~---~~a~~~vl~~Q~~~~ep~~~~e-~--~~~~id~~~-~ 146 (163)
T PRK11545 78 KKHYRDL----LREGNPNLSFIYLKGDFDVIESRLKARKG---HFFKTQMLVTQFETLQEPGADE-T--DVLVVDIDQ-P 146 (163)
T ss_pred hHHHHHH----HHccCCCEEEEEEECCHHHHHHHHHhccC---CCCCHHHHHHHHHHcCCCCCCC-C--CEEEEeCCC-C
Confidence 7777744 34577899999999999999999999975 2357899999888999876544 1 236666542 1
Q ss_pred cccchHHHHHHHHHHH
Q 047717 165 IENSSAAILDAVAYLT 180 (303)
Q Consensus 165 ~~~~~~~~~ei~~~l~ 180 (303)
. .+..++++..+.
T Consensus 147 ~---~~~~~~~~~~~~ 159 (163)
T PRK11545 147 L---EGVVASTIEVIK 159 (163)
T ss_pred H---HHHHHHHHHHHH
Confidence 1 244566665554
No 21
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.49 E-value=6.2e-13 Score=131.25 Aligned_cols=167 Identities=15% Similarity=0.188 Sum_probs=107.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD 80 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD 80 (303)
+|+|+|+|||||||+|+.|++.++.. .+..+.++|.+.. .+.....|.+...+..++ .+.......++.|.+||+|
T Consensus 394 ~Ivl~Gl~GSGKSTia~~La~~L~~~-~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~-~l~~~a~~v~~~Gg~vI~~ 471 (568)
T PRK05537 394 TVFFTGLSGAGKSTIAKALMVKLMEM-RGRPVTLLDGDVVRKHLSSELGFSKEDRDLNIL-RIGFVASEITKNGGIAICA 471 (568)
T ss_pred EEEEECCCCChHHHHHHHHHHHhhhc-cCceEEEeCCcHHHHhccCCCCCCHHHHHHHHH-HHHHHHHHHHhCCCEEEEE
Confidence 79999999999999999999999851 1334556654432 222233465544444444 2333445567889999999
Q ss_pred CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCC
Q 047717 81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCP 160 (303)
Q Consensus 81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~ 160 (303)
.++.+...|.+++.+++..+ .+.+|||++|.++|.+|+.+.-- ..-..+.+..+. +.-.+-+.|..+.++|++
T Consensus 472 ~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~e~l~~R~rr~Ll---~~~~~~~i~~l~---~~R~~yy~p~~Adl~IDt 544 (568)
T PRK05537 472 PIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRDRKGLY---AKAREGKIKGFT---GISDPYEPPANPELVIDT 544 (568)
T ss_pred eCCchHHHHHHHHHHHhhcC-CEEEEEEcCCHHHHHHhcccccc---ccchhchhhccc---cccccccCCCCCcEEEEC
Confidence 99999999999999888765 46789999999999999732100 001123344433 222223446667889987
Q ss_pred CCcccccchHHHHHHHHHHHh
Q 047717 161 YKDAIENSSAAILDAVAYLTK 181 (303)
Q Consensus 161 ~~~~~~~~~~~~~ei~~~l~~ 181 (303)
+..++ ++..++|++.|.+
T Consensus 545 ~~~s~---~eiv~~Il~~L~~ 562 (568)
T PRK05537 545 TNVTP---DECAHKILLYLEE 562 (568)
T ss_pred CCCCH---HHHHHHHHHHHHH
Confidence 64332 2344555555543
No 22
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=99.46 E-value=1.6e-12 Score=113.47 Aligned_cols=138 Identities=21% Similarity=0.252 Sum_probs=87.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---cC-CCccccCCCchh-hHHHHH-----HHHHHHHHhc-
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---FH-LDRNQSYASMPA-EKNLRG-----VLRSEVDRSV- 71 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~~-~~~~~~y~~~~~-e~~~r~-----~l~~~v~~~L- 71 (303)
+|+|+|+||.|||++|++|+++|++.++...+..+++.. .+ ......|+.... ...+|. .+...+ ..|
T Consensus 14 ~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~-~~l~ 92 (222)
T PF01591_consen 14 VIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDLI-EWLQ 92 (222)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHHH-HHHh
Confidence 799999999999999999999999987777777766531 11 112234554432 223332 333222 344
Q ss_pred -CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC----CHHHHHHHHHH
Q 047717 72 -SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY----DDKIFEDLVRR 141 (303)
Q Consensus 72 -~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~----~~e~~~~l~~r 141 (303)
..|.+.|+|++|.++..|..+...++..+..+.+|.+.|+.+..+++|..........| +++.+++..+|
T Consensus 93 ~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~R 167 (222)
T PF01591_consen 93 EEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKR 167 (222)
T ss_dssp TS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHH
Confidence 36789999999999999999999999999888888899999999999987765331122 34455555544
No 23
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.45 E-value=8.8e-13 Score=111.35 Aligned_cols=111 Identities=18% Similarity=0.312 Sum_probs=73.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV 79 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv 79 (303)
.+|+|+|+|||||||+|+.|+..+... +..+.+++.+.+. ......|.....+..++. +..........|.+||+
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~--g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~-~~~~a~~~~~~g~~vi~ 81 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREA--GYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRR-IGFVANLLTRHGVIVLV 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEcCccHHHHHhcCCCCChhhHHHHHHH-HHHHHHHHHhCCCEEEE
Confidence 489999999999999999999998654 3446666544321 111123433333444442 22222223456889999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHH
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWN 119 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~ 119 (303)
|+++.+..+|+++... ...+.+||++||.+++.+|+
T Consensus 82 ~~~~~~~~~~~~l~~~----~~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 82 SAISPYRETREEVRAN----IGNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred ecCCCCHHHHHHHHhh----cCCeEEEEEcCCHHHHHHhC
Confidence 9987666666655433 35688999999999999996
No 24
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.44 E-value=9e-13 Score=132.40 Aligned_cols=113 Identities=17% Similarity=0.250 Sum_probs=83.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV 79 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv 79 (303)
.+|+++|+|||||||+|+.|++.|... +..+.+++.+.+ .+.....|.+....+.++. +...+...+..|.+||+
T Consensus 461 ~~i~~~G~~gsGKst~a~~l~~~l~~~--~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~-l~~~a~~~~~~G~~Viv 537 (632)
T PRK05506 461 ATVWFTGLSGSGKSTIANLVERRLHAL--GRHTYLLDGDNVRHGLNRDLGFSDADRVENIRR-VAEVARLMADAGLIVLV 537 (632)
T ss_pred EEEEecCCCCchHHHHHHHHHHHHHHc--CCCEEEEcChhhhhccCCCCCCCHHHHHHHHHH-HHHHHHHHHhCCCEEEE
Confidence 589999999999999999999999753 344556654433 2222335665555666663 33345556678999999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHH
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWN 119 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~ 119 (303)
|+++..+.+|+.++.+++. .++++|||++|.+.|.+|+
T Consensus 538 da~~~~~~~R~~~r~l~~~--~~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 538 SFISPFREERELARALHGE--GEFVEVFVDTPLEVCEARD 575 (632)
T ss_pred ECCCCCHHHHHHHHHhccc--CCeEEEEECCCHHHHHhhC
Confidence 9999888999877666543 3789999999999999996
No 25
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=2.7e-12 Score=103.80 Aligned_cols=158 Identities=17% Similarity=0.183 Sum_probs=109.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC-------ccccCCCchhhHHHHHHHHHHHHHhcCCCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD-------RNQSYASMPAEKNLRGVLRSEVDRSVSKDN 75 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~-------~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~ 75 (303)
.|++.|..||||||++++|.+.|+..++ +.+.+|.. ++....++.....+. .+.......+.++.
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~-------dgDd~Hp~~NveKM~~GipLnD~DR~pWL~-~i~~~~~~~l~~~q 85 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELGLKFI-------DGDDLHPPANVEKMTQGIPLNDDDRWPWLK-KIAVELRKALASGQ 85 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhCCccc-------ccccCCCHHHHHHHhcCCCCCcccccHHHH-HHHHHHHHHhhcCC
Confidence 7999999999999999999999987532 33333321 111223322222333 22233444556888
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHc------CCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCC
Q 047717 76 IIIVDSLNSIKGYRYELWCLARAA------GIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRN 149 (303)
Q Consensus 76 ~VIvD~~n~~k~~R~~l~~~ak~~------~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~ 149 (303)
.||+-....-+.||+.++...+.. ...+.+||+.++.++..+|..+|.. +-.+.+.++....-.|.|+..+
T Consensus 86 ~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~g---HFMp~~lleSQf~~LE~p~~~e 162 (191)
T KOG3354|consen 86 GVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKG---HFMPADLLESQFATLEAPDADE 162 (191)
T ss_pred eEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhccc---ccCCHHHHHHHHHhccCCCCCc
Confidence 899998888999999888744411 2356789999999999999999975 5678999999999999998632
Q ss_pred CCCCceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717 150 RWDSPLFELCPYKDAIENSSAAILDAVAYLTK 181 (303)
Q Consensus 150 rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~ 181 (303)
+..++|+-... ..+++++.|.+
T Consensus 163 ---~div~isv~~~-------~~e~iv~tI~k 184 (191)
T KOG3354|consen 163 ---EDIVTISVKTY-------SVEEIVDTIVK 184 (191)
T ss_pred ---cceEEEeeccC-------CHHHHHHHHHH
Confidence 25677664322 24667666665
No 26
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.43 E-value=4.1e-12 Score=108.60 Aligned_cols=156 Identities=13% Similarity=0.090 Sum_probs=90.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC---CccccCCC------chh-hHH-----HHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL---DRNQSYAS------MPA-EKN-----LRGVLRSE 66 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~---~~~~~y~~------~~~-e~~-----~r~~l~~~ 66 (303)
++|+|.|++||||||+++.|++++... +..++.+....-.. .-...|.. ... +.. ....+...
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 78 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEAR--GYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEV 78 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999754 33444443221100 00011111 101 100 01112223
Q ss_pred HHHhcCCCCEEEEcCCCCc------------hHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCC-CCCHH
Q 047717 67 VDRSVSKDNIIIVDSLNSI------------KGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEA-AYDDK 133 (303)
Q Consensus 67 v~~~L~~~~~VIvD~~n~~------------k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~-~~~~e 133 (303)
+...+..+.+||+|-..+. ..+.+++...+.....+..+||+++|++++.+|+.+|+..... ....+
T Consensus 79 ~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~ 158 (200)
T cd01672 79 IKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEGLE 158 (200)
T ss_pred HHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHH
Confidence 3445678899999943211 1233444444444446788999999999999999998753211 12356
Q ss_pred HHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717 134 IFEDLVRRFEKPDRRNRWDSPLFELCPY 161 (303)
Q Consensus 134 ~~~~l~~r~E~P~~~~rwd~pl~~i~~~ 161 (303)
.++++...|+....... .+++++++.
T Consensus 159 ~~~~~~~~y~~~~~~~~--~~~~~id~~ 184 (200)
T cd01672 159 FHERVREGYLELAAQEP--ERIIVIDAS 184 (200)
T ss_pred HHHHHHHHHHHHHHhCC--CeEEEEeCC
Confidence 66777777776443322 367777764
No 27
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.43 E-value=2.5e-12 Score=110.95 Aligned_cols=113 Identities=17% Similarity=0.247 Sum_probs=79.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV 79 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv 79 (303)
.+|+|+|.+||||||+|+.|+..+... +..+++++.+.+. ......|........++ .+...+...+..|.+||.
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l~~~--~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~-~l~~~a~~~~~~G~~VI~ 101 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHEL--GVSTYLLDGDNVRHGLCSDLGFSDADRKENIR-RVGEVAKLMVDAGLVVLT 101 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhC--CCCEEEEcCEeHHhhhhhcCCcCcccHHHHHH-HHHHHHHHHhhCCCEEEE
Confidence 379999999999999999999988543 3345566543321 11123454444444444 343344456678888888
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHH
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWN 119 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~ 119 (303)
+..+..+.+|..+..+++.. .+.+|||++|.+++.+|.
T Consensus 102 ~~~~~~~~~R~~~r~~l~~~--~~i~V~L~~~~e~~~~R~ 139 (198)
T PRK03846 102 AFISPHRAERQMVRERLGEG--EFIEVFVDTPLAICEARD 139 (198)
T ss_pred EeCCCCHHHHHHHHHHcccC--CEEEEEEcCCHHHHHhcC
Confidence 87777889998888876654 466899999999999993
No 28
>PRK14527 adenylate kinase; Provisional
Probab=99.43 E-value=6.4e-13 Score=113.90 Aligned_cols=139 Identities=13% Similarity=0.185 Sum_probs=82.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc----cccCCC--chhhHHHHHHHHHHHHHhcCC--
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR----NQSYAS--MPAEKNLRGVLRSEVDRSVSK-- 73 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~----~~~y~~--~~~e~~~r~~l~~~v~~~L~~-- 73 (303)
++|+|.|+|||||||+|+.|+++++..++..+.++......+... ...+.. ..... .+...+...+.+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~----~~~~l~~~~l~~~~ 82 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDE----LILALIRDELAGME 82 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHH----HHHHHHHHHHhcCC
Confidence 489999999999999999999999865433321111100000000 000000 00011 122233333322
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHcCCcE-EEEEEecCHHHHHHHHHHhhhcC-CCCCCHHHHHHHHHHhcC
Q 047717 74 DNIIIVDSLNSIKGYRYELWCLARAAGIRY-CVLYCDLEEDHCRKWNKERHEKG-EAAYDDKIFEDLVRRFEK 144 (303)
Q Consensus 74 ~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~-~vI~l~~~~e~~~~R~~~R~~~~-~~~~~~e~~~~l~~r~E~ 144 (303)
+..+|+||......++..+..+++..+.+. ++|+++||.+++.+|+.+|.... .....++.+.+-...|..
T Consensus 83 ~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~ 155 (191)
T PRK14527 83 PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYRE 155 (191)
T ss_pred CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHH
Confidence 356999997777777877777777776654 68999999999999999986421 112245656555555543
No 29
>PRK14531 adenylate kinase; Provisional
Probab=99.42 E-value=2e-12 Score=110.17 Aligned_cols=116 Identities=14% Similarity=0.099 Sum_probs=72.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC----------CccccCCCchhhHHHHHHHHHHHHHhcC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL----------DRNQSYASMPAEKNLRGVLRSEVDRSVS 72 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~----------~~~~~y~~~~~e~~~r~~l~~~v~~~L~ 72 (303)
-|+|+|+|||||||+|+.|++.++..+++..-++..+..-+. ..+..+. +......+...+...
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~----d~l~~~~~~~~l~~~-- 77 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVS----DALVLAIVESQLKAL-- 77 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhhc--
Confidence 689999999999999999999987653222111100000000 0011111 122222222222221
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHcCC-cEEEEEEecCHHHHHHHHHHhhh
Q 047717 73 KDNIIIVDSLNSIKGYRYELWCLARAAGI-RYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
.+..+|+||.+....++..+..++...+. ..++|+++||.+++.+|+..|++
T Consensus 78 ~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r 130 (183)
T PRK14531 78 NSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGR 130 (183)
T ss_pred cCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCC
Confidence 34568889998888877777766666554 45689999999999999999875
No 30
>PRK14532 adenylate kinase; Provisional
Probab=99.41 E-value=1.7e-12 Score=110.80 Aligned_cols=117 Identities=14% Similarity=0.167 Sum_probs=73.4
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC----ccC------CCccccCCCchhhHHHHHHHHHHHHHh
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA----SFH------LDRNQSYASMPAEKNLRGVLRSEVDRS 70 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~----~~~------~~~~~~y~~~~~e~~~r~~l~~~v~~~ 70 (303)
|. |+|.|+|||||||+|+.|++.++..+++.+-++.... ..+ +..+..+. ...+...+...+ ..
T Consensus 1 ~~-i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~-~~ 74 (188)
T PRK14532 1 MN-LILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVS----DEIVIALIEERL-PE 74 (188)
T ss_pred CE-EEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccC----HHHHHHHHHHHH-hC
Confidence 44 8889999999999999999998764322111110000 000 00111111 122222333222 22
Q ss_pred cCCCCEEEEcCCCCchHHHHHHHHHHHHcCC-cEEEEEEecCHHHHHHHHHHhh
Q 047717 71 VSKDNIIIVDSLNSIKGYRYELWCLARAAGI-RYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 71 L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
+..+..+|+||.+.....+..+..+++..+. +..+|+|++|.+++.+|+..|.
T Consensus 75 ~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~ 128 (188)
T PRK14532 75 AEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRF 128 (188)
T ss_pred cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence 3456789999988888888777766666553 5589999999999999999885
No 31
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.40 E-value=7.3e-12 Score=105.83 Aligned_cols=112 Identities=19% Similarity=0.271 Sum_probs=69.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CCccccCCCchhhHHHHHHHHHHHHH-hcCCCCEEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LDRNQSYASMPAEKNLRGVLRSEVDR-SVSKDNIIIV 79 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~~~~~y~~~~~e~~~r~~l~~~v~~-~L~~~~~VIv 79 (303)
.+|+|+|+|||||||+|+.|++.+...+ ..+++++.+.+. ......|......... .....+.+ ....|..||+
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~~~~--~~~~~~~~d~~r~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~g~~VI~ 83 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLKLKY--SNVIYLDGDELREILGHYGYDKQSRIEMA--LKRAKLAKFLADQGMIVIV 83 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcC--CcEEEEecHHHHhhcCCCCCCHHHHHHHH--HHHHHHHHHHHhCCCEEEE
Confidence 3899999999999999999999997542 234455433221 0011123322111111 12222333 3357889999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE 121 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~ 121 (303)
|+.++.+. +++.++....++++|||+||++++.+|...
T Consensus 84 ~~~~~~~~----~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 84 TTISMFDE----IYAYNRKHLPNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred EeCCcHHH----HHHHHHhhcCCeEEEEEeCCHHHHHHhchh
Confidence 99876543 344445444567899999999999999764
No 32
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.40 E-value=1.4e-11 Score=104.39 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=96.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC-------CccccCCCchhhHHHHHHHHHHHHHhcC-CC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL-------DRNQSYASMPAEKNLRGVLRSEVDRSVS-KD 74 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~-------~~~~~y~~~~~e~~~r~~l~~~v~~~L~-~~ 74 (303)
+++|.|++||||||+++.|+..++.. .++.+.++. ..+..|.+.... .+...+...+...+. ..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~-------~i~gd~~~~~~~~r~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 76 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAK-------FIDGDDLHPAKNIDKMSQGIPLTDEDRL-PWLERLNDASYSLYKKNE 76 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE-------EECCcccCCHhHHHHHhcCCCCCcccch-HHHHHHHHHHHHHHhcCC
Confidence 79999999999999999999987642 222222111 001122221111 111112211111111 13
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCc
Q 047717 75 NIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSP 154 (303)
Q Consensus 75 ~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~p 154 (303)
..+|+ ++++.+.+|.. ++..+.++.+|||+||.+++.+|+.+|.. +..+.++++.....||+|...+ ..
T Consensus 77 ~g~iv-~s~~~~~~R~~----~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~---~~~~~~vl~~Q~~~~e~~~~~e---~~ 145 (176)
T PRK09825 77 TGFIV-CSSLKKQYRDI----LRKSSPNVHFLWLDGDYETILARMQRRAG---HFMPPDLLQSQFDALERPCADE---HD 145 (176)
T ss_pred CEEEE-EEecCHHHHHH----HHhhCCCEEEEEEeCCHHHHHHHHhcccC---CCCCHHHHHHHHHHcCCCCCCc---CC
Confidence 45566 66777777754 46667889999999999999999999975 3468899999999999775422 23
Q ss_pred eeeeCCCCcccccchHHHHHHHHHHHh
Q 047717 155 LFELCPYKDAIENSSAAILDAVAYLTK 181 (303)
Q Consensus 155 l~~i~~~~~~~~~~~~~~~ei~~~l~~ 181 (303)
.++++++... ....++++..+-+
T Consensus 146 ~~~~d~~~~~----~~~~~~~~~~~~~ 168 (176)
T PRK09825 146 IARIDVNHDI----ENVTEQCRQAVQA 168 (176)
T ss_pred eEEEECCCCH----HHHHHHHHHHHHH
Confidence 6777765331 2345556555543
No 33
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.38 E-value=1.8e-12 Score=110.02 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=70.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc-cCCCccc-------cCC---CchhhHHHHHHHHHHHHHhc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS-FHLDRNQ-------SYA---SMPAEKNLRGVLRSEVDRSV 71 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~-~~~~~~~-------~y~---~~~~e~~~r~~l~~~v~~~L 71 (303)
+|+|+|+|||||||+|+.|+++++..+ +..++.- ..+.... .|. ...........+...+.. .
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~-----is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~-~ 74 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTH-----LSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQA-D 74 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeE-----EECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhc-c
Confidence 589999999999999999999987542 2222210 0000000 000 000011112223222221 1
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
. +..+|+||.+.....+..|..++.....+..+||+++|.+++.+|+.+|..
T Consensus 75 ~-~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 75 G-SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred C-CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence 2 678999998877777776665544333455699999999999999999865
No 34
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.35 E-value=4.5e-11 Score=102.43 Aligned_cols=154 Identities=17% Similarity=0.214 Sum_probs=90.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc-cCCCc--ccc--CC-CchhhHHH--------H-HHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS-FHLDR--NQS--YA-SMPAEKNL--------R-GVLRSE 66 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~-~~~~~--~~~--y~-~~~~e~~~--------r-~~l~~~ 66 (303)
++|+|.|+|||||||+++.|+++++.. +..++.+.... ..... ... +. ........ | ..+...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~--g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~ 81 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN--GYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDK 81 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999864 33444433221 00000 000 00 00001000 1 122234
Q ss_pred HHHhcCCCCEEEEcCCCCchHH----------HHHHHHHHHHcCC--cEEEEEEecCHHHHHHHHHHhhhcCCC-CCCHH
Q 047717 67 VDRSVSKDNIIIVDSLNSIKGY----------RYELWCLARAAGI--RYCVLYCDLEEDHCRKWNKERHEKGEA-AYDDK 133 (303)
Q Consensus 67 v~~~L~~~~~VIvD~~n~~k~~----------R~~l~~~ak~~~~--~~~vI~l~~~~e~~~~R~~~R~~~~~~-~~~~e 133 (303)
+...+..+.+||+|... ..++ ...++++.+.... +.++|||++|++++++|+..|...... ..+.+
T Consensus 82 i~~~l~~~~~VI~DR~~-~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~~~~~~~~~~ 160 (195)
T TIGR00041 82 IKPALAEGKLVISDRYV-FSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELDREEFEKLD 160 (195)
T ss_pred HHHHHhCCCEEEECCcc-cHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCcchHHHHHHH
Confidence 55567788999999632 2221 1233444444333 789999999999999999988652111 12345
Q ss_pred HHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717 134 IFEDLVRRFEKPDRRNRWDSPLFELCPY 161 (303)
Q Consensus 134 ~~~~l~~r~E~P~~~~rwd~pl~~i~~~ 161 (303)
.++.+...|++.... ..+.++|+.+
T Consensus 161 ~~~~~~~~y~~~~~~---~~~~~~id~~ 185 (195)
T TIGR00041 161 FFEKVRQRYLELADK---EKSIHVIDAT 185 (195)
T ss_pred HHHHHHHHHHHHHcC---CCcEEEEeCC
Confidence 677777888764432 4567778754
No 35
>PRK06217 hypothetical protein; Validated
Probab=99.34 E-value=6.7e-11 Score=100.71 Aligned_cols=104 Identities=18% Similarity=0.214 Sum_probs=62.3
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccc-cC-CCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQ-SY-ASMPAEKNLRGVLRSEVDRSVSKDNIII 78 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~-~y-~~~~~e~~~r~~l~~~v~~~L~~~~~VI 78 (303)
|..|+|.|.|||||||+|++|++.++..+ +..|+ +...... .| .....+...+ .+...+..+..+|
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~-----~~~D~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v 68 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPH-----LDTDD--YFWLPTDPPFTTKRPPEERLR-----LLLEDLRPREGWV 68 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcE-----EEcCc--eeeccCCCCccccCCHHHHHH-----HHHHHHhcCCCEE
Confidence 78899999999999999999999987542 22222 1111110 01 1111111111 2223333456688
Q ss_pred EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
+||.. . .++.. +... ...+||+++|.++|.+|...|..
T Consensus 69 i~G~~-~-~~~~~---~~~~---~d~~i~Ld~~~~~~~~Rl~~R~~ 106 (183)
T PRK06217 69 LSGSA-L-GWGDP---LEPL---FDLVVFLTIPPELRLERLRLREF 106 (183)
T ss_pred EEccH-H-HHHHH---HHhh---CCEEEEEECCHHHHHHHHHcCcc
Confidence 99743 2 23222 2222 33489999999999999998863
No 36
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=3.5e-11 Score=96.81 Aligned_cols=135 Identities=19% Similarity=0.189 Sum_probs=92.6
Q ss_pred EccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC-------ccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717 7 CGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD-------RNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV 79 (303)
Q Consensus 7 ~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~-------~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv 79 (303)
.|..||||||++..|++.|+.. +++-+.+|.. .+.-..+......+. .+...+.....++..+|+
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~-------fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~-~l~~~~~~~~~~~~~~vi 72 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAK-------FIDGDDLHPPANIEKMSAGIPLNDDDRWPWLE-ALGDAAASLAQKNKHVVI 72 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCc-------eecccccCCHHHHHHHhCCCCCCcchhhHHHH-HHHHHHHHhhcCCCceEE
Confidence 3899999999999999999864 3444445431 111223322222222 233333344455565666
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeC
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELC 159 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~ 159 (303)
-....-++||+.|+.. .....+||++.+.+++.+|+..|.. +-.+.+.++....-.|+|...+ -.++|+
T Consensus 73 ~CSALKr~YRD~LR~~----~~~~~Fv~L~g~~~~i~~Rm~~R~g---HFM~~~ll~SQfa~LE~P~~de----~vi~id 141 (161)
T COG3265 73 ACSALKRSYRDLLREA----NPGLRFVYLDGDFDLILERMKARKG---HFMPASLLDSQFATLEEPGADE----DVLTID 141 (161)
T ss_pred ecHHHHHHHHHHHhcc----CCCeEEEEecCCHHHHHHHHHhccc---CCCCHHHHHHHHHHhcCCCCCC----CEEEee
Confidence 6666888999888643 2347899999999999999999975 6689999999999999999643 355665
Q ss_pred C
Q 047717 160 P 160 (303)
Q Consensus 160 ~ 160 (303)
-
T Consensus 142 i 142 (161)
T COG3265 142 I 142 (161)
T ss_pred C
Confidence 4
No 37
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.34 E-value=1e-11 Score=106.19 Aligned_cols=163 Identities=20% Similarity=0.216 Sum_probs=102.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEE-------------ecCC----------ccCCCc-cccC-CCch--
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRI-------------IDEA----------SFHLDR-NQSY-ASMP-- 54 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~-------------~~~~----------~~~~~~-~~~y-~~~~-- 54 (303)
+.|.|.||.||||||+|+.|+++|+..+++....+ +++. .+.... ...| ....
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedvs 84 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDVS 84 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchhh
Confidence 78999999999999999999999998764322110 1110 011111 1112 1110
Q ss_pred ----------------hhHHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcE-----EEEEEecCHH
Q 047717 55 ----------------AEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRY-----CVLYCDLEED 113 (303)
Q Consensus 55 ----------------~e~~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~-----~vI~l~~~~e 113 (303)
....+|..+....++....+..+|+|| +..|+-+ ..||++++++
T Consensus 85 ~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dG---------------RDiGTvV~PdA~lKiFLtAS~e 149 (222)
T COG0283 85 EEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADG---------------RDIGTVVFPDAELKIFLTASPE 149 (222)
T ss_pred hhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEec---------------CCCcceECCCCCeEEEEeCCHH
Confidence 012444444433433444557799999 4555533 4799999998
Q ss_pred H-HHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHHhc
Q 047717 114 H-CRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKK 182 (303)
Q Consensus 114 ~-~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~~ 182 (303)
+ +.+|..+....+....-++++.++..|.+. +++|-.+||.....+ -.++++...++|+++.+++.
T Consensus 150 ~RA~RR~~q~~~~g~~~~~e~ll~eI~~RD~~--D~~R~~~PLk~A~DA-~~iDTs~msieeVv~~il~~ 216 (222)
T COG0283 150 ERAERRYKQLQAKGFSEVFEELLAEIKERDER--DSNRAVAPLKPAEDA-LLLDTSSLSIEEVVEKILEL 216 (222)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHhhhc--cccCcCCCCcCCCCe-EEEECCCCcHHHHHHHHHHH
Confidence 8 677777766543112236888889999886 678889998765543 34556677788888888753
No 38
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.33 E-value=2.4e-11 Score=104.03 Aligned_cols=154 Identities=22% Similarity=0.212 Sum_probs=90.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc-----cCCCccccCCCchh-----hHHH---H-HHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS-----FHLDRNQSYASMPA-----EKNL---R-GVLRSEVD 68 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~-----~~~~~~~~y~~~~~-----e~~~---r-~~l~~~v~ 68 (303)
+|+|.|.+||||||+++.|+++++.. .+.+.. .+..-...|.+... +..+ | ..+.....
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~-------~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~ 73 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYE-------VVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALE 73 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCc-------cccccccccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999986532 122211 01001123332110 0000 0 01111121
Q ss_pred HhcCCCCEEEEcCCCCch----------HH----HHH----HHH-HHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCC
Q 047717 69 RSVSKDNIIIVDSLNSIK----------GY----RYE----LWC-LARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAA 129 (303)
Q Consensus 69 ~~L~~~~~VIvD~~n~~k----------~~----R~~----l~~-~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~ 129 (303)
.+..+.+||+|-..+.. +. .+. ++. +......+.++||+++++++|.+|+.+|++..+..
T Consensus 74 -~~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r~~e~~ 152 (193)
T cd01673 74 -HLSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGRPEEQG 152 (193)
T ss_pred -hcccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCcHhhhc
Confidence 24578999999753211 10 111 222 22224568899999999999999999997643223
Q ss_pred CCHHHHHHHHHHhcCCCCC-CCCCCceeeeCCCCcc
Q 047717 130 YDDKIFEDLVRRFEKPDRR-NRWDSPLFELCPYKDA 164 (303)
Q Consensus 130 ~~~e~~~~l~~r~E~P~~~-~rwd~pl~~i~~~~~~ 164 (303)
.+.+.+..+...|+.-... ..+..|.++++++..+
T Consensus 153 ~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid~~~~~ 188 (193)
T cd01673 153 IPLDYLEDLHEAYEKWFLPQMYEKAPVLIIDANEAD 188 (193)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCEEEEECCccc
Confidence 4567888888888874432 2456789999876533
No 39
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.33 E-value=1.2e-11 Score=105.18 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=72.5
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC---------ccccCCCchhhHHHHHHHHHHHHHhc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD---------RNQSYASMPAEKNLRGVLRSEVDRSV 71 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~---------~~~~y~~~~~e~~~r~~l~~~v~~~L 71 (303)
+|+|+|.|+|||||||+|+.|++.++..++...-++..+...... ....+.+ .......+...+...+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~ 79 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVP---LDTVLDLLKDAMVAAL 79 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHccc
Confidence 589999999999999999999999865422211000010000000 0001111 1122224444555567
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
..+..||+||.... ..+...+.+....+..+||+++|.+++.+|+.+|..
T Consensus 80 ~~~~~~i~dg~~~~---~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (188)
T TIGR01360 80 GTSKGFLIDGYPRE---VKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE 129 (188)
T ss_pred CcCCeEEEeCCCCC---HHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc
Confidence 78889999996533 233334444555678899999999999999998864
No 40
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=99.32 E-value=2.3e-11 Score=98.08 Aligned_cols=162 Identities=20% Similarity=0.252 Sum_probs=96.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc--cCCCccccCCCchhhHHHHHHHHHHHHHhcCC-CCEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS--FHLDRNQSYASMPAEKNLRGVLRSEVDRSVSK-DNIII 78 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~--~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~-~~~VI 78 (303)
++|||+|++||||||+|-+|.+.|... +.-.+.+|-+. +++.+.-.|......+.+| .+- .|.+.+.. +-+-|
T Consensus 32 cviWiTGLSgSGKStlACaL~q~L~qr--gkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIR-Rig-eVaKLFADag~ici 107 (207)
T KOG0635|consen 32 CVIWITGLSGSGKSTLACALSQALLQR--GKLTYILDGDNVRHGLNKDLGFKAEDRNENIR-RIG-EVAKLFADAGVICI 107 (207)
T ss_pred cEEEEeccCCCCchhHHHHHHHHHHhc--CceEEEecCcccccccccccCcchhhhhhhHH-HHH-HHHHHHhccceeee
Confidence 689999999999999999999999776 34445555443 3443344565444445565 333 34444443 33333
Q ss_pred EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHH----HhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCc
Q 047717 79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK----ERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSP 154 (303)
Q Consensus 79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~----~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~p 154 (303)
..-...++..|+.-+.+.+ ..++.-||+++|.++|.+|.- ++.+.+ .-.-|..+-.-||.|.. |
T Consensus 108 aSlISPYR~dRdacRel~~--~~~FiEvfmdvpl~vcE~RDPKGLYK~ARaG----kIKgFTGIddPYEaP~~------c 175 (207)
T KOG0635|consen 108 ASLISPYRKDRDACRELLP--EGDFIEVFMDVPLEVCEARDPKGLYKLARAG----KIKGFTGIDDPYEAPLN------C 175 (207)
T ss_pred ehhcCchhccHHHHHHhcc--CCCeEEEEecCcHHHhhccCchhHHHHHhcc----cccccccCCCcccCCCC------c
Confidence 2222334444544444433 348899999999999999864 333322 11224455567888774 5
Q ss_pred eeeeCCCCcccccchHHHHHHHHHHHh
Q 047717 155 LFELCPYKDAIENSSAAILDAVAYLTK 181 (303)
Q Consensus 155 l~~i~~~~~~~~~~~~~~~ei~~~l~~ 181 (303)
-+++...+...+ ++-.+.|++.|.+
T Consensus 176 Ei~l~~~~~~sp--~~mae~iv~YL~~ 200 (207)
T KOG0635|consen 176 EIVLKSHESSSP--EEMAEIIVSYLDN 200 (207)
T ss_pred EEEEccCCCCCH--HHHHHHHHHHHhh
Confidence 677765432221 2345667777775
No 41
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.32 E-value=2.1e-11 Score=104.05 Aligned_cols=174 Identities=21% Similarity=0.217 Sum_probs=103.7
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHH--HHH---HHHHHhcCCC-
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRG--VLR---SEVDRSVSKD- 74 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~--~l~---~~v~~~L~~~- 74 (303)
+++|+|.|+.|+||||+|+.|+++++.. .-...+++..+ -...|.+.......-+ -+. ...+..++.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~---~~~E~vednp~---L~~FY~d~~~yaf~~QiyFL~~Rfk~~k~~~~~~~ 77 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK---VFYELVEDNPF---LDLFYEDPERYAFLLQIYFLLNRFKKIKKALSDKN 77 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc---eeeecccCChH---HHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 4689999999999999999999999843 11122222211 1123443221111000 011 1122333333
Q ss_pred ----CEEEEcC-C----CC-----ch----HHHHHHHHHH----HHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCC-CC
Q 047717 75 ----NIIIVDS-L----NS-----IK----GYRYELWCLA----RAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAA-YD 131 (303)
Q Consensus 75 ----~~VIvD~-~----n~-----~k----~~R~~l~~~a----k~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~-~~ 131 (303)
+.|+-|. . ++ .+ -|..-+..+. ...+.|..+||++|+.++.++|+.+|++.-+.. ++
T Consensus 78 ~i~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~ 157 (216)
T COG1428 78 NILDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRPFEIDNFD 157 (216)
T ss_pred cccCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCCCccccccc
Confidence 3344443 1 11 11 1222222112 223488999999999999999999999865422 22
Q ss_pred --HHHHHHHHHHhcCCCCCCCCC-CceeeeCCCCcccccchHHHHHHHHHHHhc
Q 047717 132 --DKIFEDLVRRFEKPDRRNRWD-SPLFELCPYKDAIENSSAAILDAVAYLTKK 182 (303)
Q Consensus 132 --~e~~~~l~~r~E~P~~~~rwd-~pl~~i~~~~~~~~~~~~~~~ei~~~l~~~ 182 (303)
.+.+.++..+|..-- ..++ +|.+.++.+..+...++++++.++..|.+.
T Consensus 158 ~~~~Y~~~l~~~Y~~~~--~~~~~~~~l~i~~~~~D~~~~~~d~~~v~~~I~~~ 209 (216)
T COG1428 158 ENKDYLKDLHRRYDDWF--ENYDACPVLGIDGDSIDFVNNEQDLEKVLDQILAK 209 (216)
T ss_pred chHHHHHHHHHHHHHHH--HhcccCCeeeeccceecccCCHHHHHHHHHHHHHH
Confidence 368999999988621 2233 799999988777777788888888877753
No 42
>PRK13973 thymidylate kinase; Provisional
Probab=99.31 E-value=1.5e-10 Score=100.98 Aligned_cols=155 Identities=16% Similarity=0.147 Sum_probs=89.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC----c-------cccCCCchhhHH----HH-HHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD----R-------NQSYASMPAEKN----LR-GVLRS 65 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~----~-------~~~y~~~~~e~~----~r-~~l~~ 65 (303)
.+|+|.|.+||||||+++.|+++|... +..++...+.+-... + ...+. ...+.. .| ..+..
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~--g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~-~~~~~ll~~a~r~~~~~~ 80 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAA--GYDVLVTREPGGSPGAEAIRHVLLSGAAELYG-PRMEALLFAAARDDHVEE 80 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEECCCCCchHHHHHHHHcCCCccCCC-HHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999765 455665543321100 0 00111 111111 11 12233
Q ss_pred HHHHhcCCCCEEEEcCCCC----chH--------HHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcC-CCCCC-
Q 047717 66 EVDRSVSKDNIIIVDSLNS----IKG--------YRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKG-EAAYD- 131 (303)
Q Consensus 66 ~v~~~L~~~~~VIvD~~n~----~k~--------~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~-~~~~~- 131 (303)
.+..+|.+|.+||+|...+ +.+ +...+...+.....|.++||+++|++++.+|+.+|.... .+.+.
T Consensus 81 ~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~ 160 (213)
T PRK13973 81 VIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEK 160 (213)
T ss_pred HHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhh
Confidence 4566788899999998542 111 222322222222468999999999999999999986421 12333
Q ss_pred --HHHHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717 132 --DKIFEDLVRRFEKPDRRNRWDSPLFELCPY 161 (303)
Q Consensus 132 --~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~ 161 (303)
.+.++.....|..-.. .+...+++|+..
T Consensus 161 ~~~~~~~~~~~~y~~l~~--~~~~~~~~Ida~ 190 (213)
T PRK13973 161 EDLAFHEKRREAFLQIAA--QEPERCVVIDAT 190 (213)
T ss_pred chHHHHHHHHHHHHHHHH--hCCCcEEEEcCC
Confidence 2455555555554221 122235667654
No 43
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.31 E-value=1.4e-10 Score=100.06 Aligned_cols=154 Identities=16% Similarity=0.092 Sum_probs=86.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc---cc----CCCchh-hHH------HHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN---QS----YASMPA-EKN------LRGVLRSEV 67 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~---~~----y~~~~~-e~~------~r~~l~~~v 67 (303)
++|+|.|++||||||+++.|++++...+ ..++...+..-..... .. +.+... ... ....+...+
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i 81 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQG--RDVVFTREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVI 81 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC--CceeEeeCCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999987642 3344333221000000 00 111110 100 011233345
Q ss_pred HHhcCCCCEEEEcCCCCc------------hHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC---CH
Q 047717 68 DRSVSKDNIIIVDSLNSI------------KGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY---DD 132 (303)
Q Consensus 68 ~~~L~~~~~VIvD~~n~~------------k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~---~~ 132 (303)
...+.+|.+||+|-..+. ..+-+.+.........+.++||+++|++++.+|+.+|+.. +.+ +.
T Consensus 82 ~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~--~~~~~~~~ 159 (205)
T PRK00698 82 KPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGEL--DRIEQEGL 159 (205)
T ss_pred HHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCc--chhhhhhH
Confidence 556778999999942211 1111122222222245789999999999999999999741 222 23
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717 133 KIFEDLVRRFEKPDRRNRWDSPLFELCPY 161 (303)
Q Consensus 133 e~~~~l~~r~E~P~~~~rwd~pl~~i~~~ 161 (303)
+.+.++...|+..... .....++++++
T Consensus 160 ~~~~~~~~~y~~~~~~--~~~~~~~Id~~ 186 (205)
T PRK00698 160 DFFERVREGYLELAEK--EPERIVVIDAS 186 (205)
T ss_pred HHHHHHHHHHHHHHHh--CCCeEEEEeCC
Confidence 5666676667753321 22346777754
No 44
>PRK00625 shikimate kinase; Provisional
Probab=99.30 E-value=7.3e-12 Score=105.66 Aligned_cols=114 Identities=15% Similarity=0.075 Sum_probs=63.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD 80 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD 80 (303)
.|+|+|+|||||||+++.|+++++..+++.+.++....+.. ....+.|.. ..+..+|..-...+ +.+..+..||..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~~-~Ge~~fr~~E~~~l-~~l~~~~~VIs~ 79 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQA-YGEEGFCREEFLAL-TSLPVIPSIVAL 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHHH-HCHHHHHHHHHHHH-HHhccCCeEEEC
Confidence 48999999999999999999999764322221111101100 011112211 12334442222223 334445556655
Q ss_pred C-CCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 81 S-LNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 81 ~-~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
| ...... +.++..+.. .++||+++|.+++.+|+.+|+.
T Consensus 80 GGg~~~~~---e~~~~l~~~---~~Vv~L~~~~e~l~~Rl~~R~~ 118 (173)
T PRK00625 80 GGGTLMIE---PSYAHIRNR---GLLVLLSLPIATIYQRLQKRGL 118 (173)
T ss_pred CCCccCCH---HHHHHHhcC---CEEEEEECCHHHHHHHHhcCCC
Confidence 4 333333 334433433 4599999999999999998864
No 45
>PRK01184 hypothetical protein; Provisional
Probab=99.28 E-value=4.2e-11 Score=101.84 Aligned_cols=114 Identities=13% Similarity=0.172 Sum_probs=63.1
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCC---chhh--HHHHH-----HHHHHHHHh
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYAS---MPAE--KNLRG-----VLRSEVDRS 70 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~---~~~e--~~~r~-----~l~~~v~~~ 70 (303)
|.+|+|+|+|||||||+|+ +++.++. .++..+|.--.......+.. ...+ ...+. .+...+...
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~-----~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 74 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMGI-----PVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPK 74 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcCC-----cEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 8999999999999999987 6666654 34443321000000000100 0000 01111 111111122
Q ss_pred c--CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 71 V--SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 71 L--~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
+ ..+..||+|+. ........+. +..+..+.+|+++||.+++.+|+..|.+
T Consensus 75 i~~~~~~~vvidg~-r~~~e~~~~~---~~~~~~~~~i~v~~~~~~~~~Rl~~R~~ 126 (184)
T PRK01184 75 IREKGDEVVVIDGV-RGDAEVEYFR---KEFPEDFILIAIHAPPEVRFERLKKRGR 126 (184)
T ss_pred HHhcCCCcEEEeCC-CCHHHHHHHH---HhCCcccEEEEEECCHHHHHHHHHHcCC
Confidence 2 24678999996 2333333332 2234467899999999999999998864
No 46
>PRK13949 shikimate kinase; Provisional
Probab=99.27 E-value=2.4e-11 Score=102.25 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=65.1
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD 80 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD 80 (303)
|.-|+|+|+|||||||+++.|++.++...++.+..+.. .++..-...|. ...+...|......+......+..||.+
T Consensus 1 m~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~--~~~~~~~~~~~-~~g~~~fr~~e~~~l~~l~~~~~~vis~ 77 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIEN--RFHKTVGDIFA-ERGEAVFRELERNMLHEVAEFEDVVIST 77 (169)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHH--HHCccHHHHHH-HhCHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 67799999999999999999999997643332211110 11111111222 1123344433343444433345667767
Q ss_pred CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717 81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE 121 (303)
Q Consensus 81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~ 121 (303)
|...... ++-+...+..+. +||+++|.+++.+|+..
T Consensus 78 Ggg~~~~--~~~~~~l~~~~~---vi~L~~~~~~~~~Ri~~ 113 (169)
T PRK13949 78 GGGAPCF--FDNMELMNASGT---TVYLKVSPEVLFVRLRL 113 (169)
T ss_pred CCcccCC--HHHHHHHHhCCe---EEEEECCHHHHHHHHhc
Confidence 6433211 112223355554 89999999999999974
No 47
>PRK02496 adk adenylate kinase; Provisional
Probab=99.26 E-value=2.7e-11 Score=103.12 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=78.8
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc-CCCccc-------cC---CCchhhHHHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF-HLDRNQ-------SY---ASMPAEKNLRGVLRSEVDR 69 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~-~~~~~~-------~y---~~~~~e~~~r~~l~~~v~~ 69 (303)
|+-|+|.|+|||||||+|+.|++.++.. .+..++.-. .+.... .| .....+......+...+.+
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~-----~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~ 75 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIP-----HISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQ 75 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCc-----EEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhC
Confidence 7779999999999999999999998754 222221100 000000 00 0000111111122222221
Q ss_pred hcCCCCEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717 70 SVSKDNIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK 144 (303)
Q Consensus 70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~ 144 (303)
. .....+|+||......+...+.......+ .+..+|++++|.+++.+|+..|++. ...++.+.+....|+.
T Consensus 76 ~-~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~---dd~~~~~~~r~~~y~~ 147 (184)
T PRK02496 76 P-DAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRK---DDTEEVIRRRLEVYRE 147 (184)
T ss_pred c-CccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCC---CCCHHHHHHHHHHHHH
Confidence 1 23357999997665555444444444443 4678999999999999999999652 3356666666665554
No 48
>PRK13946 shikimate kinase; Provisional
Probab=99.26 E-value=3e-11 Score=102.97 Aligned_cols=161 Identities=13% Similarity=0.110 Sum_probs=89.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS 81 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~ 81 (303)
..|+|+|+|||||||+++.|++.|+..+++.+..... ..+......+. ...+..++..-...+...+..+..||..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~--~~g~~~~e~~~-~~ge~~~~~~e~~~l~~l~~~~~~Vi~~g 87 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIER--AARMTIAEIFA-AYGEPEFRDLERRVIARLLKGGPLVLATG 87 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHH--HhCCCHHHHHH-HHCHHHHHHHHHHHHHHHHhcCCeEEECC
Confidence 4799999999999999999999997654333321100 01111111111 11233444333444555555667777775
Q ss_pred C--CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC--CCCCHHHHHHHHHHhcCCCCCCCCCCceee
Q 047717 82 L--NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE--AAYDDKIFEDLVRRFEKPDRRNRWDSPLFE 157 (303)
Q Consensus 82 ~--n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~--~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~ 157 (303)
. ...+..|..+. ..+ .+|||++|.+++.+|+..|...+- ...+.+.++++..++++ . |...-++
T Consensus 88 gg~~~~~~~r~~l~----~~~---~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~-~----y~~~dl~ 155 (184)
T PRK13946 88 GGAFMNEETRAAIA----EKG---ISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYP-V----YAEADLT 155 (184)
T ss_pred CCCcCCHHHHHHHH----cCC---EEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHH-H----HHhCCEE
Confidence 3 34444444432 233 589999999999999998764210 11234677777766553 2 2222356
Q ss_pred eCCCCcccccchHHHHHHHHHHH
Q 047717 158 LCPYKDAIENSSAAILDAVAYLT 180 (303)
Q Consensus 158 i~~~~~~~~~~~~~~~ei~~~l~ 180 (303)
+++....+ +...++|+++|.
T Consensus 156 i~~~~~~~---~~~~~~i~~~i~ 175 (184)
T PRK13946 156 VASRDVPK---EVMADEVIEALA 175 (184)
T ss_pred EECCCCCH---HHHHHHHHHHHH
Confidence 66543322 233444444443
No 49
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.25 E-value=1.2e-10 Score=98.12 Aligned_cols=116 Identities=20% Similarity=0.219 Sum_probs=69.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--C-C----ccccC--CC------chhhHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--L-D----RNQSY--AS------MPAEKNLRGVLRSE 66 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~-~----~~~~y--~~------~~~e~~~r~~l~~~ 66 (303)
.+|+|.|.|+|||||+|+.|++.+... .+.++-+.+. + . ....+ .. ......++ .+...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p-----~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~ 75 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEP-----WLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYA-AMHAA 75 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS------EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHH-HHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCC-----eEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHH-HHHHH
Confidence 489999999999999999999998754 2333311110 1 0 00011 10 11112233 55566
Q ss_pred HHHhcCCCCEEEEcCCCCchHH-HHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhc
Q 047717 67 VDRSVSKDNIIIVDSLNSIKGY-RYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEK 125 (303)
Q Consensus 67 v~~~L~~~~~VIvD~~n~~k~~-R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~ 125 (303)
+....+.|..||+|.......+ .+.+..+. .+.++.+|-+.||.+++.+|...|+.+
T Consensus 76 iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L--~~~~vl~VgV~Cpleil~~RE~~RgDR 133 (174)
T PF07931_consen 76 IAAMARAGNNVIVDDVFLGPRWLQDCLRRLL--AGLPVLFVGVRCPLEILERRERARGDR 133 (174)
T ss_dssp HHHHHHTT-EEEEEE--TTTHHHHHHHHHHH--TTS-EEEEEEE--HHHHHHHHHHHTSS
T ss_pred HHHHHhCCCCEEEecCccCcHHHHHHHHHHh--CCCceEEEEEECCHHHHHHHHHhcCCc
Confidence 7777789999999987665554 22222222 378899999999999999999999863
No 50
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.24 E-value=1.5e-11 Score=106.09 Aligned_cols=118 Identities=25% Similarity=0.296 Sum_probs=75.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCC----------chhhHHHHHHHHHHHHHhcC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYAS----------MPAEKNLRGVLRSEVDRSVS 72 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~----------~~~e~~~r~~l~~~v~~~L~ 72 (303)
+|++.|.|||||||++..+.+.+. ....+.++.+.+..... .|.. .........+....+..++.
T Consensus 17 ~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~ 91 (199)
T PF06414_consen 17 LIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHP-DYDELLKADPDEASELTQKEASRLAEKLIEYAIE 91 (199)
T ss_dssp EEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGST-THHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhcc-chhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999998874 12345555443321000 1111 11223333355556677788
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhc
Q 047717 73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEK 125 (303)
Q Consensus 73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~ 125 (303)
.+..+|+|+++....+-.++...+++.|+.+.++++.+|++.++.|...|...
T Consensus 92 ~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~ 144 (199)
T PF06414_consen 92 NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEE 144 (199)
T ss_dssp CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHH
T ss_pred cCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHc
Confidence 89999999999887777767788899999999999999999999999998653
No 51
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.24 E-value=2.7e-10 Score=99.86 Aligned_cols=172 Identities=16% Similarity=0.101 Sum_probs=94.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCcc---EEEecCCc-cCCC--------ccccCCCch--------hh-HHH--
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKET---VRIIDEAS-FHLD--------RNQSYASMP--------AE-KNL-- 59 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~---v~~~~~~~-~~~~--------~~~~y~~~~--------~e-~~~-- 59 (303)
+|+|.|..||||||+++.|+++++...+..+ .....+.. ..+. -...|.+.. .+ ..+
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 5899999999999999999999875321111 00000000 0000 001232211 00 001
Q ss_pred H-HHHHHHHHHhcCCCCEEEEcCCCC--------------chHHHHHHHH-H----HHHcCCcEEEEEEecCHHHHHHHH
Q 047717 60 R-GVLRSEVDRSVSKDNIIIVDSLNS--------------IKGYRYELWC-L----ARAAGIRYCVLYCDLEEDHCRKWN 119 (303)
Q Consensus 60 r-~~l~~~v~~~L~~~~~VIvD~~n~--------------~k~~R~~l~~-~----ak~~~~~~~vI~l~~~~e~~~~R~ 119 (303)
| ..+...+...+..|.+||+|...+ ..+.-+.++. + ......|..+||+++|++.+.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 1 122233444567788999998632 1111122222 1 122245789999999999999999
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHhcCCCCC-CCCCCceeeeCCCCcccccchHHHHHHHHHHH
Q 047717 120 KERHEKGEAAYDDKIFEDLVRRFEKPDRR-NRWDSPLFELCPYKDAIENSSAAILDAVAYLT 180 (303)
Q Consensus 120 ~~R~~~~~~~~~~e~~~~l~~r~E~P~~~-~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~ 180 (303)
.+|++..+...+.+.++.+...|+.-... .+-.++.++++.+. ...+++|++.|.
T Consensus 161 ~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~~------~~~~e~i~~~I~ 216 (219)
T cd02030 161 KKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTE------AGDTEKVVEDIE 216 (219)
T ss_pred HHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCCC------hhhHHHHHHHHH
Confidence 99886433446677777777777542100 00124778887531 234677776654
No 52
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.23 E-value=2.4e-11 Score=101.85 Aligned_cols=148 Identities=16% Similarity=0.131 Sum_probs=75.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---ccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIII 78 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VI 78 (303)
++|+|+|+|||||||+|+.|++.++... +..|+. ..+......+.. ..+..++......+...+.....||
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~~~~-----~d~d~~~~~~~g~~~~~~~~~-~g~~~~~~~~~~~~~~l~~~~~~vi 78 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLGYDF-----IDTDHLIEARAGKSIPEIFEE-EGEAAFRELEEEVLAELLARHNLVI 78 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCE-----EEChHHHHHHcCCCHHHHHHH-HCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 5899999999999999999999997542 222211 111110111110 1122233233333444444444555
Q ss_pred EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCC--CCHHHHHHHHHHhcCCCCCCCCCCcee
Q 047717 79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAA--YDDKIFEDLVRRFEKPDRRNRWDSPLF 156 (303)
Q Consensus 79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~--~~~e~~~~l~~r~E~P~~~~rwd~pl~ 156 (303)
..+.... ++...+...+. ...+||+++|.+.+.+|..+|....... ...+.+..+..+.... .. ....+
T Consensus 79 ~~g~~~~--~~~~~r~~l~~---~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~---~~~dl 149 (175)
T PRK00131 79 STGGGAV--LREENRALLRE---RGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPL-YE---EVADI 149 (175)
T ss_pred EeCCCEe--ecHHHHHHHHh---CCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHH-HH---hhcCe
Confidence 5553221 11122222232 3468999999999999998765421111 1234455555443321 10 11347
Q ss_pred eeCCCCcc
Q 047717 157 ELCPYKDA 164 (303)
Q Consensus 157 ~i~~~~~~ 164 (303)
+++++...
T Consensus 150 ~idt~~~~ 157 (175)
T PRK00131 150 TVETDGRS 157 (175)
T ss_pred EEeCCCCC
Confidence 78765443
No 53
>PRK13947 shikimate kinase; Provisional
Probab=99.23 E-value=8.5e-11 Score=98.60 Aligned_cols=114 Identities=15% Similarity=0.120 Sum_probs=63.7
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD 80 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD 80 (303)
|.-|+|+|+|||||||+|+.|++.|+..+++.+..+-. ..+....+.|. ...+..++..-...++.....+..||..
T Consensus 1 m~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~--~~g~~~~~~~~-~~ge~~~~~~e~~~~~~l~~~~~~vi~~ 77 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEK--MTGMTVAEIFE-KDGEVRFRSEEKLLVKKLARLKNLVIAT 77 (171)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhh--hcCCcHHHHHH-HhChHHHHHHHHHHHHHHhhcCCeEEEC
Confidence 78899999999999999999999998653322221100 11111111111 1223344433232333333344555544
Q ss_pred CCCC--chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 81 SLNS--IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 81 ~~n~--~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
+..+ ....+ ...+..+ .+||++++.+.+.+|...|..
T Consensus 78 g~g~vl~~~~~----~~l~~~~---~vv~L~~~~~~l~~Rl~~r~~ 116 (171)
T PRK13947 78 GGGVVLNPENV----VQLRKNG---VVICLKARPEVILRRVGKKKS 116 (171)
T ss_pred CCCCcCCHHHH----HHHHhCC---EEEEEECCHHHHHHHhcCCCC
Confidence 4322 12222 2223333 499999999999999987643
No 54
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.22 E-value=1e-10 Score=102.18 Aligned_cols=115 Identities=14% Similarity=0.180 Sum_probs=67.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CCccc--------cCCC--chhhHHHHHHHHHHHHHhc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LDRNQ--------SYAS--MPAEKNLRGVLRSEVDRSV 71 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~~~~--------~y~~--~~~e~~~r~~l~~~v~~~L 71 (303)
.|+|.|+|||||||+|+.|+++++..+ +..++.-.. +.... .... ..........+...+.. .
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~-----is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~-~ 75 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPH-----ISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQ-P 75 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE-----EECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhc-c
Confidence 389999999999999999999987643 332221000 00000 0000 00111112122222211 1
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHHHcCC-cEEEEEEecCHHHHHHHHHHhh
Q 047717 72 SKDNIIIVDSLNSIKGYRYELWCLARAAGI-RYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
..+..+|+||..........+.......+. ..++|+++||.+++.+|+..|.
T Consensus 76 ~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (215)
T PRK00279 76 DCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR 128 (215)
T ss_pred CccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence 123479999976665555555444455554 4589999999999999999985
No 55
>PLN02924 thymidylate kinase
Probab=99.22 E-value=2.7e-10 Score=99.81 Aligned_cols=137 Identities=21% Similarity=0.195 Sum_probs=82.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC----ccccC-----CCchhhH----HHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD----RNQSY-----ASMPAEK----NLRGVLRSEVD 68 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~----~~~~y-----~~~~~e~----~~r~~l~~~v~ 68 (303)
++|+|.|.+||||||+++.|+++|...+ ..+....+...... -.... -+...+. .-|......+.
T Consensus 17 ~~IviEGiDGsGKsTq~~~L~~~l~~~g--~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~I~ 94 (220)
T PLN02924 17 ALIVLEGLDRSGKSTQCAKLVSFLKGLG--VAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSLME 94 (220)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC--CCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998764 34444332211000 00000 0111110 11111223466
Q ss_pred HhcCCCCEEEEcCCCC-------chHHHHHHH-HHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC-CHHHHHHHH
Q 047717 69 RSVSKDNIIIVDSLNS-------IKGYRYELW-CLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY-DDKIFEDLV 139 (303)
Q Consensus 69 ~~L~~~~~VIvD~~n~-------~k~~R~~l~-~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~-~~e~~~~l~ 139 (303)
.+|..|.+||+|-..+ .++...++. .+....-.|.++|||++|++++.+|...+. +.+ ..+.+.++.
T Consensus 95 pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~----~~~E~~~~~~rv~ 170 (220)
T PLN02924 95 RKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGG----ERYEKLEFQKKVA 170 (220)
T ss_pred HHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc----cccccHHHHHHHH
Confidence 7888999999998654 122222221 122223468999999999999999865322 223 346777777
Q ss_pred HHhcC
Q 047717 140 RRFEK 144 (303)
Q Consensus 140 ~r~E~ 144 (303)
..|..
T Consensus 171 ~~Y~~ 175 (220)
T PLN02924 171 KRFQT 175 (220)
T ss_pred HHHHH
Confidence 77765
No 56
>PRK03839 putative kinase; Provisional
Probab=99.22 E-value=1.7e-10 Score=97.76 Aligned_cols=100 Identities=20% Similarity=0.193 Sum_probs=58.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL 82 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~ 82 (303)
.|+|+|+|||||||+|+.|++.++..+ +..++.-....-...+.+ ..+...+ .+...+...+. +..||+||.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~-----id~d~~~~~~~~~~~~~~-~~~~~~~-~l~~~~~~~~~-~~~vIidG~ 73 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEY-----VDLTEFALKKGIGEEKDD-EMEIDFD-KLAYFIEEEFK-EKNVVLDGH 73 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE-----EehhhhhhhcCCcccCCh-hhhcCHH-HHHHHHHHhcc-CCCEEEEec
Confidence 599999999999999999999997643 223321000000011111 1111223 23233333333 456899984
Q ss_pred CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 83 NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 83 n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
+.. + . .+..+||++++++++.+|+..|.
T Consensus 74 ~~~---------l-~---~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 74 LSH---------L-L---PVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred ccc---------c-c---CCCEEEEEECCHHHHHHHHHHcC
Confidence 310 1 1 23458999999999999998875
No 57
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.21 E-value=1.3e-10 Score=96.85 Aligned_cols=160 Identities=16% Similarity=0.181 Sum_probs=91.5
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD 80 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD 80 (303)
|+-|+|+|++||||||+++.||+.|+..+++.|..+-.. .+..-..+|.. ..|...|..-...+.+.+..+..||.-
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~--~g~sI~eIF~~-~GE~~FR~~E~~vl~~l~~~~~~ViaT 78 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKR--TGMSIAEIFEE-EGEEGFRRLETEVLKELLEEDNAVIAT 78 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHH--HCcCHHHHHHH-HhHHHHHHHHHHHHHHHhhcCCeEEEC
Confidence 346899999999999999999999987654444332221 12211223321 235566644444455555565677777
Q ss_pred CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC-C-CCCHHHHHHHHHH----hcCCCCCCCCCCc
Q 047717 81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE-A-AYDDKIFEDLVRR----FEKPDRRNRWDSP 154 (303)
Q Consensus 81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~-~-~~~~e~~~~l~~r----~E~P~~~~rwd~p 154 (303)
|.-..- ..+-+...+..+ .+||+++|.++..+|.......+. . .-+.+.+++++.. |++ .-
T Consensus 79 GGG~v~--~~enr~~l~~~g---~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e--------~a 145 (172)
T COG0703 79 GGGAVL--SEENRNLLKKRG---IVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYRE--------VA 145 (172)
T ss_pred CCcccc--CHHHHHHHHhCC---eEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHH--------hC
Confidence 644321 123333445555 499999999999999983322110 1 1122555555553 443 23
Q ss_pred eeeeCCCCcccccchHHHHHHHHHHH
Q 047717 155 LFELCPYKDAIENSSAAILDAVAYLT 180 (303)
Q Consensus 155 l~~i~~~~~~~~~~~~~~~ei~~~l~ 180 (303)
.+++++++.. ....++|++.|.
T Consensus 146 ~~~~~~~~~~----~~v~~~i~~~l~ 167 (172)
T COG0703 146 DFIIDTDDRS----EEVVEEILEALE 167 (172)
T ss_pred cEEecCCCCc----HHHHHHHHHHHH
Confidence 5666654222 345566666554
No 58
>PLN02200 adenylate kinase family protein
Probab=99.20 E-value=7.1e-11 Score=104.46 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=67.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---ccCC-C-----------ccccCCCchhhHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---SFHL-D-----------RNQSYASMPAEKNLRGVLRSE 66 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---~~~~-~-----------~~~~y~~~~~e~~~r~~l~~~ 66 (303)
.+|+|+|+|||||||+|+.|+++++..+ +..++. .+.. . .+..+. .......+...
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~h-----is~gdllR~~i~~~s~~~~~i~~~~~~G~~vp----~e~~~~~l~~~ 114 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKH-----LSAGDLLRREIASNSEHGAMILNTIKEGKIVP----SEVTVKLIQKE 114 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeE-----EEccHHHHHHHhccChhHHHHHHHHHcCCCCc----HHHHHHHHHHH
Confidence 3789999999999999999999987542 222211 0000 0 000111 11111122222
Q ss_pred HHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 67 VDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 67 v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
+.. ..+..+|+||......++..+...+. ..+..+|++++|.+++.+|..+|..
T Consensus 115 l~~--~~~~~~ILDG~Prt~~q~~~l~~~~~--~~pd~vi~Ld~~~e~~~~Rl~~R~~ 168 (234)
T PLN02200 115 MES--SDNNKFLIDGFPRTEENRIAFERIIG--AEPNVVLFFDCPEEEMVKRVLNRNQ 168 (234)
T ss_pred Hhc--CCCCeEEecCCcccHHHHHHHHHHhc--cCCCEEEEEECCHHHHHHHHHcCcC
Confidence 221 13457999997776666655543321 2466899999999999999998854
No 59
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.20 E-value=7.3e-10 Score=95.94 Aligned_cols=171 Identities=16% Similarity=0.188 Sum_probs=102.7
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC----CccccCCC-----chhhH-----HHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL----DRNQSYAS-----MPAEK-----NLRGVLRSE 66 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~----~~~~~y~~-----~~~e~-----~~r~~l~~~ 66 (303)
+.+|+|.|.-||||||.++.|+++|...+ .+|+...+.+... -+...... ...+. .....+...
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g--~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~ 80 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERG--IKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEV 80 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999998874 4666665543211 01111111 11111 111134445
Q ss_pred HHHhcCCCCEEEEcCCCC----ch--------HHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCH--
Q 047717 67 VDRSVSKDNIIIVDSLNS----IK--------GYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDD-- 132 (303)
Q Consensus 67 v~~~L~~~~~VIvD~~n~----~k--------~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~-- 132 (303)
+..++..|.+||+|-..+ +. .+..++.+.+...-.|..++|+++|++++.+|..+|+.. .+.+..
T Consensus 81 i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~-~~r~E~~~ 159 (208)
T COG0125 81 IKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL-RDRFEKED 159 (208)
T ss_pred HHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCc-cchhhhHH
Confidence 666788999999996431 22 223333333333226899999999999999999999763 123433
Q ss_pred -HHHHHHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHH
Q 047717 133 -KIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLT 180 (303)
Q Consensus 133 -e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~ 180 (303)
+.+++....|.+-. ..|....++|+.... + +...++|.+.|.
T Consensus 160 ~~f~~kvr~~Y~~la--~~~~~r~~vIda~~~-~---e~v~~~i~~~l~ 202 (208)
T COG0125 160 DEFLEKVREGYLELA--AKFPERIIVIDASRP-L---EEVHEEILKILK 202 (208)
T ss_pred HHHHHHHHHHHHHHH--hhCCCeEEEEECCCC-H---HHHHHHHHHHHH
Confidence 35777777887633 222224778876532 2 334444444443
No 60
>PRK13808 adenylate kinase; Provisional
Probab=99.20 E-value=2.4e-10 Score=105.27 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=68.3
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc----cCCC-----ccccCCCchhhHHHHHHHHHHHHHhc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS----FHLD-----RNQSYASMPAEKNLRGVLRSEVDRSV 71 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~----~~~~-----~~~~y~~~~~e~~~r~~l~~~v~~~L 71 (303)
|. |+|.|+|||||||+|+.|++.++..+++..-++..+.. .+.. ..+.+. ....+...+...+...
T Consensus 1 mr-Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lV---Pdeiv~~li~e~l~~~- 75 (333)
T PRK13808 1 MR-LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLV---PDEVVVGIISDRIEQP- 75 (333)
T ss_pred CE-EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCC---CHHHHHHHHHHHHhcc-
Confidence 44 78899999999999999999987643222111111000 0000 000011 1122222333333221
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHh
Q 047717 72 SKDNIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKER 122 (303)
Q Consensus 72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R 122 (303)
.....+|+||......+...|..+....+ .+..+|+|++|.+++++|+..|
T Consensus 76 ~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 76 DAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETR 127 (333)
T ss_pred cccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence 23467999997666665555554444333 4778999999999999999987
No 61
>PRK08118 topology modulation protein; Reviewed
Probab=99.18 E-value=1.7e-10 Score=96.84 Aligned_cols=101 Identities=21% Similarity=0.236 Sum_probs=62.7
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD 80 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD 80 (303)
|+-|+|+|+|||||||+|+.|++.++.. ++.+|+.-.. . .+.....+ . +...+...+.. ..+|+|
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~-----~~~lD~l~~~--~--~w~~~~~~-~----~~~~~~~~~~~-~~wVid 65 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIP-----VHHLDALFWK--P--NWEGVPKE-E----QITVQNELVKE-DEWIID 65 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCC-----ceecchhhcc--c--CCcCCCHH-H----HHHHHHHHhcC-CCEEEe
Confidence 7889999999999999999999998754 3444422111 1 11111111 1 12223333433 568999
Q ss_pred CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
|.. .... .. ... ....+||+++|.++|..|..+|..
T Consensus 66 G~~-~~~~-~~---~l~---~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 66 GNY-GGTM-DI---RLN---AADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred CCc-chHH-HH---HHH---hCCEEEEEeCCHHHHHHHHHHHHH
Confidence 963 2222 11 112 245599999999999999999854
No 62
>PRK07933 thymidylate kinase; Validated
Probab=99.18 E-value=2e-09 Score=93.91 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=88.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CC----cc---ccCCC---c-hhhHHH----HHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LD----RN---QSYAS---M-PAEKNL----RGVLR 64 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~----~~---~~y~~---~-~~e~~~----r~~l~ 64 (303)
++|+|.|+.||||||+++.|+++|... +..|+...+...+ .. +. ..+.+ + ..+..+ |....
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~--g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~ 78 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEAR--GRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGAR 78 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhH
Confidence 389999999999999999999999876 4456555433111 00 00 00101 1 111100 11111
Q ss_pred HHHHHhcCCCCEEEEcCCCCch----HHH----------HHHHHHHH---HcCCcEEEEEEecCHHHHHHHHHHhhhcC-
Q 047717 65 SEVDRSVSKDNIIIVDSLNSIK----GYR----------YELWCLAR---AAGIRYCVLYCDLEEDHCRKWNKERHEKG- 126 (303)
Q Consensus 65 ~~v~~~L~~~~~VIvD~~n~~k----~~R----------~~l~~~ak---~~~~~~~vI~l~~~~e~~~~R~~~R~~~~- 126 (303)
..+..+|.+|.+||+|...+.. +.+ ..+..+.. ....|.++||+++|++++.+|..+|+...
T Consensus 79 ~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~ 158 (213)
T PRK07933 79 DELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQDA 158 (213)
T ss_pred HHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhccccC
Confidence 2355667889999999754321 111 11111221 11258999999999999999999986320
Q ss_pred ---CCCCC--HHHHHHHHHHhcCCCCCCCCCCceeeeCC
Q 047717 127 ---EAAYD--DKIFEDLVRRFEKPDRRNRWDSPLFELCP 160 (303)
Q Consensus 127 ---~~~~~--~e~~~~l~~r~E~P~~~~rwd~pl~~i~~ 160 (303)
.+.+. .+.+.++.+.|..-.. ..|....++++.
T Consensus 159 ~~~~d~~E~~~~f~~~v~~~Y~~~~~-~~~~~~~~~ida 196 (213)
T PRK07933 159 DRARDAYERDDGLQQRTGAVYAELAA-QGWGGPWLVVDP 196 (213)
T ss_pred CcccccccccHHHHHHHHHHHHHHHH-hcCCCCeEEeCC
Confidence 02232 4566666666654221 114445667765
No 63
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.16 E-value=4.3e-10 Score=96.06 Aligned_cols=112 Identities=14% Similarity=0.076 Sum_probs=68.2
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc-CCCccc--------cCC--CchhhHHHHHHHHHHHHHhcC
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF-HLDRNQ--------SYA--SMPAEKNLRGVLRSEVDRSVS 72 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~-~~~~~~--------~y~--~~~~e~~~r~~l~~~v~~~L~ 72 (303)
|+|+|+|||||||+|+.|++.++.. ++..++.-. ...... ... ...... .+...+...+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~-----~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~l~~~~l~ 72 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLP-----HISTGDLLREEIASGTELGKKAKEYIDSGKLVPDE----IVIKLLKERLK 72 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe-----EEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHH----HHHHHHHHHHh
Confidence 8999999999999999999998653 233322100 000000 000 000011 12222333333
Q ss_pred ---CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 73 ---KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 73 ---~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
.+..+|+||..........+.......+.+..+|++++|.+++.+|+.+|..
T Consensus 73 ~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 73 KPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred cccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 3567999997666555555554443334678899999999999999999875
No 64
>PRK08233 hypothetical protein; Provisional
Probab=99.16 E-value=1.1e-09 Score=92.42 Aligned_cols=111 Identities=18% Similarity=0.134 Sum_probs=63.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc---cccCCCc-hhhHHHHHHHHHHHHHhcCCC--C
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR---NQSYASM-PAEKNLRGVLRSEVDRSVSKD--N 75 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~---~~~y~~~-~~e~~~r~~l~~~v~~~L~~~--~ 75 (303)
.+|+|+|.|||||||+|+.|+++++.. .+...+........ ...+... ..+......+...+...++.. .
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNS----KALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVD 79 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCC----ceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCce
Confidence 489999999999999999999998632 34444433221100 0001100 001111123444555555544 6
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 76 IIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 76 ~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
+||+|+.... ...++. .. ...+||+++|.+++.+|..+|..
T Consensus 80 ~vivd~~~~~--~~~~~~---~~---~d~~i~l~~~~~~~~~R~~~R~~ 120 (182)
T PRK08233 80 YIIVDYPFAY--LNSEMR---QF---IDVTIFIDTPLDIAMARRILRDF 120 (182)
T ss_pred EEEEeeehhh--ccHHHH---HH---cCEEEEEcCCHHHHHHHHHHHHh
Confidence 7888875321 111111 11 34699999999999999887753
No 65
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.16 E-value=7.1e-10 Score=112.04 Aligned_cols=140 Identities=15% Similarity=0.221 Sum_probs=89.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc--ccCCCch-hhHHHH--HHHHHHHHH-hcCCCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN--QSYASMP-AEKNLR--GVLRSEVDR-SVSKDN 75 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~--~~y~~~~-~e~~~r--~~l~~~v~~-~L~~~~ 75 (303)
.+|+|.|+||+||||+|+.|+++|++.+++.+++..++....+... ..+.... .+...+ ..+...+.. .++.|.
T Consensus 216 ~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~~Gg 295 (664)
T PTZ00322 216 LIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICKTDG 295 (664)
T ss_pred eeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4899999999999999999999999887777777766543322111 1111111 111122 112111222 445688
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCC----cEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 047717 76 IIIVDSLNSIKGYRYELWCLARAAGI----RYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRR 141 (303)
Q Consensus 76 ~VIvD~~n~~k~~R~~l~~~ak~~~~----~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r 141 (303)
++|+|++|.....|..+....++.+. .+..|.+.|+.....++|..|.........++...++..+
T Consensus 296 vaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~~~e~~~~~~~~~ 365 (664)
T PTZ00322 296 VAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPGAPEDFVDRYYEV 365 (664)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999999888877777777664 5667777888888889888776532222233444444444
No 66
>PRK14528 adenylate kinase; Provisional
Probab=99.14 E-value=5.9e-10 Score=95.22 Aligned_cols=118 Identities=16% Similarity=0.183 Sum_probs=70.3
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc-CCCcc-------ccCCCc---hhhHHHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF-HLDRN-------QSYASM---PAEKNLRGVLRSEVDR 69 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~-~~~~~-------~~y~~~---~~e~~~r~~l~~~v~~ 69 (303)
|+.|+|.|+|||||||+|+.|++.++.. ++..++.-. .+... ..|.+. .....+...+...+.+
T Consensus 1 ~~~i~i~G~pGsGKtt~a~~la~~~~~~-----~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~ 75 (186)
T PRK14528 1 MKNIIFMGPPGAGKGTQAKILCERLSIP-----QISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIRE 75 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCC-----eeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhC
Confidence 7889999999999999999999998754 333332100 00000 001000 0111111122222222
Q ss_pred hcCCCCEEEEcCCCCchHHHHHHHHHHHHc-CCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 70 SVSKDNIIIVDSLNSIKGYRYELWCLARAA-GIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~-~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
. .....+|+||.......-..+..+.... ..+..+|+++||.+++.+|+..|..
T Consensus 76 ~-~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~ 130 (186)
T PRK14528 76 A-DCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAE 130 (186)
T ss_pred c-CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCcc
Confidence 2 2346799999665555555555544332 3467899999999999999998853
No 67
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.13 E-value=1.3e-09 Score=93.07 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=64.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CCcc--ccCCCchhhHHHH------------------H
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LDRN--QSYASMPAEKNLR------------------G 61 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~~~--~~y~~~~~e~~~r------------------~ 61 (303)
+|+|+|++||||||+++.|+..++.. +. +.+.... ..+. ..|.....+...+ +
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg 77 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQ-----LL-VAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYG 77 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCe-----EE-EcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccC
Confidence 78999999999999999998876431 22 2211100 0000 0010000111000 1
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 62 VLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 62 ~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
... .+...+..+..||+||. +.....+.+..+....+||+++|.+++.+|+..|.+
T Consensus 78 ~~~-~~~~~l~~g~~VI~~G~------~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~ 133 (186)
T PRK10078 78 VGI-EIDLWLHAGFDVLVNGS------RAHLPQARARYQSALLPVCLQVSPEILRQRLENRGR 133 (186)
T ss_pred CcH-HHHHHHhCCCEEEEeCh------HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCC
Confidence 112 35567778888999875 222223445566678899999999999999998854
No 68
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.13 E-value=4.1e-09 Score=89.13 Aligned_cols=112 Identities=15% Similarity=0.188 Sum_probs=62.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC-c-cCCCccccCCCchhhHH------------------HHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA-S-FHLDRNQSYASMPAEKN------------------LRG 61 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~-~-~~~~~~~~y~~~~~e~~------------------~r~ 61 (303)
.+|+|+|+|||||||+++.|+..+...+ .+.+.... . -.......|.....+.. +.+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDP---RVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCC---cEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 4789999999999999999999875421 11111000 0 00000001110000000 000
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 62 VLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 62 ~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
. ...+...+.++..||+|+. ...+..+ +.......+|||++|.+++.+|+..|.+
T Consensus 79 ~-~~~i~~~~~~g~~vv~~g~---~~~~~~~----~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 133 (179)
T TIGR02322 79 I-PAEIDQWLEAGDVVVVNGS---RAVLPEA----RQRYPNLLVVNITASPDVLAQRLAARGR 133 (179)
T ss_pred C-hHHHHHHHhcCCEEEEECC---HHHHHHH----HHHCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 0 1123345567889999985 2222222 2223356899999999999999998854
No 69
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.12 E-value=2.3e-10 Score=94.05 Aligned_cols=112 Identities=18% Similarity=0.130 Sum_probs=61.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCCC
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLN 83 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~n 83 (303)
|+|+|+|||||||+|+.|++.++...++.+.++.. ..+......+. ...+..++......+......+..||..+..
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~--~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~ 78 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQ--RAGMSIPEIFA-EEGEEGFRELEREVLLLLLTKENAVIATGGG 78 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHH--HcCCCHHHHHH-HHCHHHHHHHHHHHHHHHhccCCcEEECCCC
Confidence 78999999999999999999997643222211100 00110011111 1112233322233444445555666665544
Q ss_pred CchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 84 SIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 84 ~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
.+-.... +.... ....+||+.+|.+++.+|+.+|.
T Consensus 79 ~i~~~~~--~~~~~---~~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 79 AVLREEN--RRLLL---ENGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred ccCcHHH--HHHHH---cCCeEEEEeCCHHHHHHHhccCC
Confidence 3322111 11222 24469999999999999999885
No 70
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.12 E-value=7.8e-11 Score=96.24 Aligned_cols=110 Identities=16% Similarity=0.212 Sum_probs=62.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC-CccCCCccc--cCCCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE-ASFHLDRNQ--SYASMPAEKNLRGVLRSEVDRSVSKDNIII 78 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~-~~~~~~~~~--~y~~~~~e~~~r~~l~~~v~~~L~~~~~VI 78 (303)
++|.|.|+|||||||+|+.|+++++..+++...++.+- ...+++-.+ .|..... .+...+........ ....||
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p--~iD~~iD~rq~e~a-~~~nvV 77 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDP--EIDKEIDRRQKELA-KEGNVV 77 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCc--hhhHHHHHHHHHHH-HcCCeE
Confidence 36999999999999999999999986532211111110 011111111 1111111 11111111111222 256788
Q ss_pred EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
++|. ..+| +++ ......||+.+|.++..+|+.+|..
T Consensus 78 legr--LA~W------i~k--~~adlkI~L~Apl~vRa~Ria~REg 113 (179)
T COG1102 78 LEGR--LAGW------IVR--EYADLKIWLKAPLEVRAERIAKREG 113 (179)
T ss_pred Ehhh--hHHH------Hhc--cccceEEEEeCcHHHHHHHHHHhcC
Confidence 9983 2232 223 4566789999999999999999964
No 71
>PRK07261 topology modulation protein; Provisional
Probab=99.12 E-value=4.3e-10 Score=94.78 Aligned_cols=100 Identities=21% Similarity=0.240 Sum_probs=62.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL 82 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~ 82 (303)
-|+|+|.|||||||+|+.|++.++.. ++..|.... . . .+.....+ .+...+...+.++. +|+||+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~-----~i~~D~~~~--~-~-~~~~~~~~-----~~~~~~~~~~~~~~-wIidg~ 66 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCP-----VLHLDTLHF--Q-P-NWQERDDD-----DMIADISNFLLKHD-WIIDGN 66 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC-----eEecCCEEe--c-c-ccccCCHH-----HHHHHHHHHHhCCC-EEEcCc
Confidence 48999999999999999999887643 344332211 1 1 12211111 22234445566666 999997
Q ss_pred CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 83 NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 83 n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
+....+. . ..... ..+||+++|..+|..|..+|.-
T Consensus 67 ~~~~~~~-~---~l~~a---d~vI~Ld~p~~~~~~R~lkR~~ 101 (171)
T PRK07261 67 YSWCLYE-E---RMQEA---DQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred chhhhHH-H---HHHHC---CEEEEEcCCHHHHHHHHHHHHH
Confidence 5321211 1 12233 3499999999999999998864
No 72
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.12 E-value=3.6e-10 Score=94.25 Aligned_cols=117 Identities=17% Similarity=0.131 Sum_probs=73.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCC----------chhhHHHHHHHHHHHHHhc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYAS----------MPAEKNLRGVLRSEVDRSV 71 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~----------~~~e~~~r~~l~~~v~~~L 71 (303)
|+|++.|.|||||-|+|..+++.++..+++..-++..+..- . +.-|.. -...+.....+..++....
T Consensus 9 ~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~--~-gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~~ 85 (195)
T KOG3079|consen 9 PIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIAS--A-GSERGALIKEIIKNGDLVPVEITLSLLEEAMRSSG 85 (195)
T ss_pred CEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHcc--c-cChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999986433221111111000 0 001110 0112333434554444433
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhhc
Q 047717 72 SKDNIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHEK 125 (303)
Q Consensus 72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~~ 125 (303)
.+ ..+++||.......+..|. +.++ .+..++|++|+.|+|.+|+..|++.
T Consensus 86 ~~-~~fLIDGyPR~~~q~~~fe---~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 86 DS-NGFLIDGYPRNVDQLVEFE---RKIQGDPDFVLFFDCPEETMLKRLLHRGQS 136 (195)
T ss_pred CC-CeEEecCCCCChHHHHHHH---HHhcCCCCEEEEEeCCHHHHHHHHHhhccc
Confidence 33 3499999776666665554 3343 5778999999999999999999874
No 73
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.11 E-value=3.9e-10 Score=94.69 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=63.9
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD 80 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD 80 (303)
|..|+|+|+|||||||+|+.|++.++..+++.+.+.-. ..+..... +.....+..++..-...+ +.+..+..||.-
T Consensus 2 ~~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~--~~g~~~~~-~~~~~g~~~~~~~e~~~~-~~~~~~~~vi~~ 77 (171)
T PRK03731 2 TQPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQS--TSNMTVAE-IVEREGWAGFRARESAAL-EAVTAPSTVIAT 77 (171)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHH--HhCCCHHH-HHHHHCHHHHHHHHHHHH-HHhcCCCeEEEC
Confidence 45789999999999999999999997642221111100 01111011 111112334443333333 445555666665
Q ss_pred CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
|..+.- +...+.+.+..+ .+||+++|++++.+|+..|.
T Consensus 78 ggg~vl--~~~~~~~l~~~~---~~v~l~~~~~~~~~Rl~~r~ 115 (171)
T PRK03731 78 GGGIIL--TEENRHFMRNNG---IVIYLCAPVSVLANRLEANP 115 (171)
T ss_pred CCCccC--CHHHHHHHHhCC---EEEEEECCHHHHHHHHcccc
Confidence 544321 112233334444 49999999999999998774
No 74
>PRK13948 shikimate kinase; Provisional
Probab=99.11 E-value=6.6e-10 Score=94.46 Aligned_cols=109 Identities=17% Similarity=0.045 Sum_probs=66.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC-
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS- 81 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~- 81 (303)
.|+|+|+|||||||+++.|++.++...++.|..+.. .++....+.|. ...+..+|..-...+.+.+..+..||.-|
T Consensus 12 ~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~--~~g~si~~if~-~~Ge~~fR~~E~~~l~~l~~~~~~VIa~Gg 88 (182)
T PRK13948 12 WVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIER--VTGKSIPEIFR-HLGEAYFRRCEAEVVRRLTRLDYAVISLGG 88 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHH--HHhCCHHHHHH-HhCHHHHHHHHHHHHHHHHhcCCeEEECCC
Confidence 799999999999999999999997653333221111 11111112222 12345666444445555555566666643
Q ss_pred -CCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717 82 -LNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE 121 (303)
Q Consensus 82 -~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~ 121 (303)
+......|..+ +..+ .+||+++|.+++.+|+..
T Consensus 89 G~v~~~~n~~~l----~~~g---~vV~L~~~~e~l~~Rl~~ 122 (182)
T PRK13948 89 GTFMHEENRRKL----LSRG---PVVVLWASPETIYERTRP 122 (182)
T ss_pred cEEcCHHHHHHH----HcCC---eEEEEECCHHHHHHHhcC
Confidence 33344444433 3344 489999999999999954
No 75
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.10 E-value=2.8e-10 Score=98.99 Aligned_cols=114 Identities=16% Similarity=0.206 Sum_probs=66.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc-CCCcccc-------CC---CchhhHHHHHHHHHHHHHhcC
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF-HLDRNQS-------YA---SMPAEKNLRGVLRSEVDRSVS 72 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~-~~~~~~~-------y~---~~~~e~~~r~~l~~~v~~~L~ 72 (303)
|+|.|+|||||||+|+.|++.++..+ +..++.-. .+..... |. .......+...+...+.....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~-----is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~ 76 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPH-----ISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQD 76 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCe-----eehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcc
Confidence 78999999999999999999987543 22222100 0000000 00 000112222233333332222
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
.+..+|+||..........|...... .+..+|++++|.+++.+|...|..
T Consensus 77 ~~~~~ilDGfPrt~~Qa~~l~~~~~~--~~~~vi~L~~~~~~~~~Rl~~R~~ 126 (210)
T TIGR01351 77 NENGFILDGFPRTLSQAEALDALLKE--KIDAVIELDVPDEELVERLSGRRI 126 (210)
T ss_pred cCCcEEEeCCCCCHHHHHHHHHHhcc--CCCEEEEEECCHHHHHHHHHCCCc
Confidence 35689999976655555444433211 467899999999999999998853
No 76
>PRK06696 uridine kinase; Validated
Probab=99.09 E-value=7.3e-10 Score=97.32 Aligned_cols=111 Identities=23% Similarity=0.276 Sum_probs=65.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc-----------cccCCCchhhHHHHHHHHHHH---
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR-----------NQSYASMPAEKNLRGVLRSEV--- 67 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~-----------~~~y~~~~~e~~~r~~l~~~v--- 67 (303)
.+|.|+|.|||||||+|+.|++.|+.. +..+++++.+++.... .+.|....+-..+...+...+
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~--g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~~~ 100 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKR--GRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLGPN 100 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhccCC
Confidence 589999999999999999999999754 3455554433333211 111111111112221211100
Q ss_pred ---------------------HHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 68 ---------------------DRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 68 ---------------------~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
...+..+.+||+||...... .+. ..-..+|||+||.+++.+|...|.
T Consensus 101 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~---~~~------~~~d~~i~v~~~~e~~~~R~~~Rd 168 (223)
T PRK06696 101 GDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRP---ELR------DLWDYKIFLDTDFEVSRRRGAKRD 168 (223)
T ss_pred CceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhh---hHH------hhCCEEEEEECCHHHHHHHHHHhh
Confidence 01123456899999754322 111 112369999999999999999886
No 77
>PRK14530 adenylate kinase; Provisional
Probab=99.09 E-value=3.2e-10 Score=99.03 Aligned_cols=117 Identities=16% Similarity=0.186 Sum_probs=65.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCch-hhHHH-------HHHHHHHHHHhcCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMP-AEKNL-------RGVLRSEVDRSVSK 73 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~-~e~~~-------r~~l~~~v~~~L~~ 73 (303)
|.|+|.|+|||||||+|+.|++.++..++...-++.......+ ........ ....+ .+.....+...+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~--~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~ 81 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDI--SDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSD 81 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCc--ccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 5799999999999999999999997542211111111000000 00000000 00000 01122233344444
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 74 DNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 74 ~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
...+|+||..........+... ..+..+||+++|.+++.+|+.+|..
T Consensus 82 ~~~~IldG~pr~~~q~~~l~~~----~~~d~vI~Ld~~~~~l~~Rl~~R~~ 128 (215)
T PRK14530 82 ADGFVLDGYPRNLEQAEYLESI----TDLDVVLYLDVSEEELVDRLTGRRV 128 (215)
T ss_pred CCCEEEcCCCCCHHHHHHHHHh----cCCCEEEEEeCCHHHHHHHHhCCCc
Confidence 5679999965555444443322 2356699999999999999998853
No 78
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.08 E-value=9e-10 Score=92.91 Aligned_cols=144 Identities=15% Similarity=0.147 Sum_probs=73.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---ccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIII 78 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VI 78 (303)
..|+|.|++||||||+++.|++.++... +..|.. ..+..-...|. ...+..+|..-...+......+..||
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~-----vd~D~~i~~~~g~~i~~~~~-~~g~~~fr~~e~~~l~~l~~~~~~vi 78 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEF-----YDSDQEIEKRTGADIGWVFD-VEGEEGFRDREEKVINELTEKQGIVL 78 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcE-----EECCchHHHHhCcCHhHHHH-HhCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 3699999999999999999999986542 222211 01110011111 11233344322223333333444454
Q ss_pred EcCCC--CchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC--CCCCHHHHHHHHHHhcCCCCCCCCCCc
Q 047717 79 VDSLN--SIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE--AAYDDKIFEDLVRRFEKPDRRNRWDSP 154 (303)
Q Consensus 79 vD~~n--~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~--~~~~~e~~~~l~~r~E~P~~~~rwd~p 154 (303)
.-|.. ..+..| .+.+..+ .+||+++|.++|.+|+..+..++. +..+.+.+..+...-+ |-. ..+ .
T Consensus 79 ~~ggg~v~~~~~~----~~l~~~~---~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~-~~Y-~~~--A 147 (172)
T PRK05057 79 ATGGGSVKSRETR----NRLSARG---VVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERN-PLY-EEI--A 147 (172)
T ss_pred EcCCchhCCHHHH----HHHHhCC---EEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHH-HHH-Hhh--C
Confidence 44322 122222 2334444 499999999999999976543211 1112355666555432 111 001 3
Q ss_pred eeeeCCCC
Q 047717 155 LFELCPYK 162 (303)
Q Consensus 155 l~~i~~~~ 162 (303)
.++|++++
T Consensus 148 d~~idt~~ 155 (172)
T PRK05057 148 DVTIRTDD 155 (172)
T ss_pred CEEEECCC
Confidence 47777653
No 79
>PRK04040 adenylate kinase; Provisional
Probab=99.05 E-value=2e-09 Score=92.05 Aligned_cols=113 Identities=15% Similarity=0.233 Sum_probs=61.9
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCC---------CchhhHHHHHHHHHHHHHhc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYA---------SMPAEKNLRGVLRSEVDRSV 71 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~---------~~~~e~~~r~~l~~~v~~~L 71 (303)
|.+|+|+|.|||||||+++.|++.+.. +..++..++.-...-....+. +......++......+. .+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~---~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~-~~ 77 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKE---DYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIA-EM 77 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhcc---CCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHH-Hh
Confidence 568999999999999999999999841 223444443211000000110 00111222222222222 23
Q ss_pred CCCCEEEEcCCCC-------chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717 72 SKDNIIIVDSLNS-------IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE 121 (303)
Q Consensus 72 ~~~~~VIvD~~n~-------~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~ 121 (303)
..+..||+|+... +.+.-.+ ..+.. .+..+|++.+|+++..+|..+
T Consensus 78 ~~~~~~~~~~h~~i~~~~g~~~~~~~~---~~~~l-~pd~ii~l~a~p~~i~~Rrl~ 130 (188)
T PRK04040 78 AGEGPVIVDTHATIKTPAGYLPGLPEW---VLEEL-NPDVIVLIEADPDEILMRRLR 130 (188)
T ss_pred hcCCCEEEeeeeeeccCCCCcCCCCHH---HHhhc-CCCEEEEEeCCHHHHHHHHhc
Confidence 4566799999442 3332222 23444 567789999999987777663
No 80
>PRK14529 adenylate kinase; Provisional
Probab=99.05 E-value=1.3e-09 Score=95.37 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=71.6
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc---ccCCCc---hhhHHHHHHHHHHHHHhcCCC
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN---QSYASM---PAEKNLRGVLRSEVDRSVSKD 74 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~---~~y~~~---~~e~~~r~~l~~~v~~~L~~~ 74 (303)
|. |+|.|+|||||||+|+.|+++++..+++...++..+..-+.... ..|-.. .........+...+... . .
T Consensus 1 m~-I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~-~-~ 77 (223)
T PRK14529 1 MN-ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQD-G-K 77 (223)
T ss_pred CE-EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhcc-C-C
Confidence 54 88899999999999999999998764433222211100000000 000000 00111111222222211 2 5
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhh
Q 047717 75 NIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 75 ~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
..+|+||......+-..|.......+ .+..+|++++|.+++.+|+..|.
T Consensus 78 ~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 127 (223)
T PRK14529 78 NGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR 127 (223)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence 67999998888877776666544433 45679999999999999999885
No 81
>PRK13975 thymidylate kinase; Provisional
Probab=99.05 E-value=3.3e-09 Score=90.94 Aligned_cols=167 Identities=14% Similarity=0.152 Sum_probs=81.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc-cCCCccccCC----CchhhH-H---HHHHHHHHHHHhcC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS-FHLDRNQSYA----SMPAEK-N---LRGVLRSEVDRSVS 72 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~-~~~~~~~~y~----~~~~e~-~---~r~~l~~~v~~~L~ 72 (303)
.+|+|.|++||||||+|+.|++.++.. ......+. ++-.-...+. +..... . -|......+...+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~-----~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~ 77 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF-----WTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLK 77 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC-----eeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 489999999999999999999999742 11111110 0000000111 110000 0 01011112333444
Q ss_pred CCCEEEEcCCCCch-------H-HHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHhc
Q 047717 73 KDNIIIVDSLNSIK-------G-YRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYD-DKIFEDLVRRFE 143 (303)
Q Consensus 73 ~~~~VIvD~~n~~k-------~-~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~-~e~~~~l~~r~E 143 (303)
. ..||+|...+.. + ....+..+......+..+||+++|++++.+|+..|+. +.+. .+.+.++...|+
T Consensus 78 ~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~---~~~~~~~~~~~~~~~y~ 153 (196)
T PRK13975 78 K-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDK---EIFEKKEFLKKVQEKYL 153 (196)
T ss_pred C-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCc---cccchHHHHHHHHHHHH
Confidence 4 679999532110 0 0111111222223467899999999999999998863 1222 344445554444
Q ss_pred CCCCCCCC--CCceeeeCCCCcccccchHHHHHHHHHHH
Q 047717 144 KPDRRNRW--DSPLFELCPYKDAIENSSAAILDAVAYLT 180 (303)
Q Consensus 144 ~P~~~~rw--d~pl~~i~~~~~~~~~~~~~~~ei~~~l~ 180 (303)
.-.....+ ....+++++++.++ ++..++|++.|.
T Consensus 154 ~~~~~~~~~~~~~~~~Id~~~~~~---eev~~~I~~~i~ 189 (196)
T PRK13975 154 ELANNEKFMPKYGFIVIDTTNKSI---EEVFNEILNKIK 189 (196)
T ss_pred HHHhhcccCCcCCEEEEECCCCCH---HHHHHHHHHHHH
Confidence 32111101 11357777642222 234455554444
No 82
>PRK06547 hypothetical protein; Provisional
Probab=99.04 E-value=2.3e-09 Score=90.40 Aligned_cols=110 Identities=19% Similarity=0.148 Sum_probs=65.6
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHH--------------
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSE-------------- 66 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~-------------- 66 (303)
|.+|+|+|++||||||+|+.|++.++.. ++..|+. ..... .. ....+.+.+.+...
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~-----~~~~d~~--~~~~~-~~--~~~~~~l~~~~l~~g~~~~~~yd~~~~~ 84 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQ-----LVHLDDL--YPGWH-GL--AAASEHVAEAVLDEGRPGRWRWDWANNR 84 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCC-----eecccce--ecccc-cC--ChHHHHHHHHHHhCCCCceecCCCCCCC
Confidence 4689999999999999999999987543 3333321 11000 00 11111222122100
Q ss_pred --HHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 67 --VDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 67 --v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
....+..+.+||+||..... .++...+.+ +.....||+++|.+++.+|..+|..
T Consensus 85 ~~~~~~l~~~~vVIvEG~~al~---~~~r~~~d~-~g~v~~I~ld~~~~vr~~R~~~Rd~ 140 (172)
T PRK06547 85 PGDWVSVEPGRRLIIEGVGSLT---AANVALASL-LGEVLTVWLDGPEALRKERALARDP 140 (172)
T ss_pred CCCcEEeCCCCeEEEEehhhcc---HHHHHHhcc-CCCEEEEEEECCHHHHHHHHHhcCc
Confidence 00012345789999975442 334444443 3446799999999999999999964
No 83
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.04 E-value=1e-09 Score=90.91 Aligned_cols=133 Identities=21% Similarity=0.239 Sum_probs=75.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc--cCCCccccCCCch-----hhHHHHHHHHHHHHHhcCCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS--FHLDRNQSYASMP-----AEKNLRGVLRSEVDRSVSKD 74 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~--~~~~~~~~y~~~~-----~e~~~r~~l~~~v~~~L~~~ 74 (303)
|+|+|+|.||+||||+|+.|+ .++. .++.+.+.- .+. ...|+... +...++ ..+...+ ..
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~-----~~i~l~el~~e~~~--~~~~de~r~s~~vD~d~~~----~~le~~~-~~ 67 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGY-----KVIELNELAKENGL--YTEYDELRKSVIVDVDKLR----KRLEELL-RE 67 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCC-----ceeeHHHHHHhcCC--eeccCCccceEEeeHHHHH----HHHHHHh-cc
Confidence 589999999999999999999 6654 355544321 111 01121111 122223 2233333 34
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC---CCCCHHHHHHHHHHhcCCCCCCCC
Q 047717 75 NIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE---AAYDDKIFEDLVRRFEKPDRRNRW 151 (303)
Q Consensus 75 ~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~---~~~~~e~~~~l~~r~E~P~~~~rw 151 (303)
...|+|+. ++...+....+|.+.|+++++.+|+.+|+-..+ +....+.++-... | ..++|
T Consensus 68 ~~~Ivd~H------------~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~--E---A~E~~ 130 (180)
T COG1936 68 GSGIVDSH------------LSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILI--E---AVERF 130 (180)
T ss_pred CCeEeech------------hhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH--H---HHHhc
Confidence 56888883 223334456799999999999999999975211 1122233332221 1 12234
Q ss_pred CCceeeeCCCCccc
Q 047717 152 DSPLFELCPYKDAI 165 (303)
Q Consensus 152 d~pl~~i~~~~~~~ 165 (303)
.+.+.+++.+.++
T Consensus 131 -~~v~evdtt~~s~ 143 (180)
T COG1936 131 -EAVIEVDTTNRSP 143 (180)
T ss_pred -CceEEEECCCCCH
Confidence 4788888775543
No 84
>PTZ00301 uridine kinase; Provisional
Probab=99.04 E-value=6.5e-09 Score=90.39 Aligned_cols=115 Identities=22% Similarity=0.301 Sum_probs=65.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc-------c--cCCCc--hhhHHHHHHHHHHHH--
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN-------Q--SYASM--PAEKNLRGVLRSEVD-- 68 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~-------~--~y~~~--~~e~~~r~~l~~~v~-- 68 (303)
.+|.|+|.|||||||+|+.|++.+........+.++.+++++.... . .|... .+...+...+.....
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g~ 83 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSGK 83 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcCC
Confidence 4899999999999999999998875321112243455554443211 1 12111 111122222221110
Q ss_pred ------------------HhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 69 ------------------RSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 69 ------------------~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
..+....+||+||.+... ..++. ... .+.||+++|.++|..|..+|..
T Consensus 84 ~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~--~~~l~---~l~---D~~ifvd~~~d~~~~Rr~~Rd~ 149 (210)
T PTZ00301 84 TVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFT--NAELR---NEM---DCLIFVDTPLDICLIRRAKRDM 149 (210)
T ss_pred cccCCCcccccCCcCCceEEeCCCcEEEEechhhhC--CHHHH---HhC---CEEEEEeCChhHHHHHHHhhhH
Confidence 012345789999976421 12222 222 3379999999999999988874
No 85
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.02 E-value=1e-08 Score=86.89 Aligned_cols=148 Identities=18% Similarity=0.211 Sum_probs=83.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC----ccCCCccccCCCc---hhhHHHHHHHHHHHHHhcCCCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA----SFHLDRNQSYASM---PAEKNLRGVLRSEVDRSVSKDN 75 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~----~~~~~~~~~y~~~---~~e~~~r~~l~~~v~~~L~~~~ 75 (303)
-|+|.|+|||||||+|+.|++.++..+++......... .++... ..|-+. .....+-+.+...+.+. ....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~-k~~i~~g~lv~d~i~~~~v~~rl~~~-d~~~ 79 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEI-KKYIDKGELVPDEIVNGLVKERLDEA-DCKA 79 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHH-HHHHHcCCccchHHHHHHHHHHHHhh-cccC
Confidence 47899999999999999999998754332221111100 000000 000000 00112222333333333 2223
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCc
Q 047717 76 IIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSP 154 (303)
Q Consensus 76 ~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~p 154 (303)
.+|+|+....-.+-..+....+..+ ....++.++++.+....|...|... ....++.+..-...|+. +..|
T Consensus 80 ~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r--~dd~~~~~~~R~~~y~~------~~~p 151 (178)
T COG0563 80 GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVR--EDDNEETVKKRLKVYHE------QTAP 151 (178)
T ss_pred eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCcccc--ccCCHHHHHHHHHHHHh------cccc
Confidence 8999998766555444555545555 4567899999999999999988521 12356666666666765 3446
Q ss_pred eeeeCC
Q 047717 155 LFELCP 160 (303)
Q Consensus 155 l~~i~~ 160 (303)
++....
T Consensus 152 li~~y~ 157 (178)
T COG0563 152 LIEYYS 157 (178)
T ss_pred hhhhhe
Confidence 655543
No 86
>PRK07667 uridine kinase; Provisional
Probab=99.01 E-value=3.8e-09 Score=90.74 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=64.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc----ccCCC-------chhhHHHHHHHHHHHHH-
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN----QSYAS-------MPAEKNLRGVLRSEVDR- 69 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~----~~y~~-------~~~e~~~r~~l~~~v~~- 69 (303)
.+|.|+|.|||||||+|+.|++.++..+....++..|+ +..... ..+.+ ...-..+...+...+..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd--~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~ 95 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD--YIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE 95 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc--ccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence 47999999999999999999999976543333444443 221110 01110 00111111111111110
Q ss_pred --------------------hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 70 --------------------SVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 70 --------------------~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
.+....+||+||..... ..+.. .-..+||++||.+++.+|..+|.
T Consensus 96 ~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~---~~~~~------~~d~~v~V~~~~~~~~~R~~~r~ 160 (193)
T PRK07667 96 TKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQR---KEWRD------FFHYMVYLDCPRETRFLRESEET 160 (193)
T ss_pred CeEEEeeeccccccccccceecCCCCEEEEEehhhhh---hhHHh------hceEEEEEECCHHHHHHHHhccc
Confidence 12235789999986432 12221 23569999999999999998874
No 87
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.01 E-value=6.5e-09 Score=89.53 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=71.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---------ccC-CCcc------ccCCCchhhHHHH-----
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---------SFH-LDRN------QSYASMPAEKNLR----- 60 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---------~~~-~~~~------~~y~~~~~e~~~r----- 60 (303)
.+|+++|.|||||||+|+.|++.++.. +++.+|. ... .... ..|.+...+...+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~-----~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q 78 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAID-----IVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQ 78 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCe-----EEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHH
Confidence 589999999999999999999997642 2332221 000 0001 1343332221111
Q ss_pred -----HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEec-CHHHHHHHHHHhhhcC
Q 047717 61 -----GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDL-EEDHCRKWNKERHEKG 126 (303)
Q Consensus 61 -----~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~-~~e~~~~R~~~R~~~~ 126 (303)
..+...+.+.+..|..||+|+.+...+++...+ ..+ ..++++.+ +.+..++|...|....
T Consensus 79 ~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~----~~~--v~~i~l~v~d~e~lr~Rl~~R~~~~ 144 (197)
T PRK12339 79 ARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENR----TNN--IRAFYLYIRDAELHRSRLADRINYT 144 (197)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHH----hcC--eEEEEEEeCCHHHHHHHHHHHhhcc
Confidence 234455667888999999999999888874322 222 34555544 6778889999998643
No 88
>PRK08356 hypothetical protein; Provisional
Probab=98.99 E-value=1.1e-08 Score=88.00 Aligned_cols=110 Identities=14% Similarity=0.150 Sum_probs=58.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC--CccccCC--------C-----ch--hhHHHH----
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL--DRNQSYA--------S-----MP--AEKNLR---- 60 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~--~~~~~y~--------~-----~~--~e~~~r---- 60 (303)
++|+|+|+|||||||+|+.|++ ++. .++..++.-... .....|. . .. ....++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~g~-----~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG 79 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-KGF-----CRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYG 79 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCC-----cEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcC
Confidence 5899999999999999999964 443 233333210000 0000110 0 00 001111
Q ss_pred -HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 61 -GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 61 -~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
..+...+...+.....+++||. .....+..+ +.. ...+||+++|.+++.+|+.+|..
T Consensus 80 ~~~~~~~~~~~~~~~~~ividG~-r~~~q~~~l----~~~--~~~vi~l~~~~~~~~~Rl~~R~~ 137 (195)
T PRK08356 80 EDILIRLAVDKKRNCKNIAIDGV-RSRGEVEAI----KRM--GGKVIYVEAKPEIRFERLRRRGA 137 (195)
T ss_pred cHHHHHHHHHHhccCCeEEEcCc-CCHHHHHHH----Hhc--CCEEEEEECCHHHHHHHHHhcCC
Confidence 1111122223333346999996 332222222 222 23689999999999999998875
No 89
>PRK13974 thymidylate kinase; Provisional
Probab=98.99 E-value=4.1e-08 Score=85.56 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=70.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccC---CccEEEecCCcc-CC--------Cccc-cCCCc-hhhHHH----H-HH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEA---KETVRIIDEASF-HL--------DRNQ-SYASM-PAEKNL----R-GV 62 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~---~~~v~~~~~~~~-~~--------~~~~-~y~~~-~~e~~~----r-~~ 62 (303)
.+|+|.|++||||||+++.|++++...+. +..++...+.+- .. .... ..... ..+..+ | ..
T Consensus 4 ~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~~ 83 (212)
T PRK13974 4 KFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQH 83 (212)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHH
Confidence 48999999999999999999999975431 123444332210 00 0000 01111 111110 1 12
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCc----hH--------HHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 63 LRSEVDRSVSKDNIIIVDSLNSI----KG--------YRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 63 l~~~v~~~L~~~~~VIvD~~n~~----k~--------~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
+...+...+.+|.+||+|-..+. .+ +-.++...+...-.+.++||++||++++.+|+..|..
T Consensus 84 ~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~d 157 (212)
T PRK13974 84 VSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKP 157 (212)
T ss_pred HHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccc
Confidence 22335566788899999873211 11 1222322222222588899999999999999988753
No 90
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.98 E-value=2.2e-09 Score=93.93 Aligned_cols=163 Identities=14% Similarity=0.159 Sum_probs=87.5
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEE-------------ecCC--------ccCC----Ccc--ccCCCc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRI-------------IDEA--------SFHL----DRN--QSYASM 53 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~-------------~~~~--------~~~~----~~~--~~y~~~ 53 (303)
+++|.|.|++||||||+++.|+++++..++....+. +++. .+++ ... ..|-+.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNG 81 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcC
Confidence 168999999999999999999999886433222111 0000 0110 000 011100
Q ss_pred -----------h--------hhHHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHH
Q 047717 54 -----------P--------AEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDH 114 (303)
Q Consensus 54 -----------~--------~e~~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~ 114 (303)
. ....+|..+.....+. .+...+|+||.. +-.+ + .......||+++|.++
T Consensus 82 ~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~-a~~~~~Vi~Gr~-~~~~------v---~~~a~~~ifl~a~~~~ 150 (217)
T TIGR00017 82 EDVSEAIRTQEVANAASKVAVFPKVREALLKRQQAL-AKNDGIIADGRD-IGTV------V---FPNAEVKIFLDASVEE 150 (217)
T ss_pred cchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhcCCEEEEEcC-cceE------E---eCCCCEEEEEECCHHH
Confidence 0 1134454555444443 344568999841 1110 1 1124569999999999
Q ss_pred HHHHHHHhhhcCCCCCC-HHHHHHHHHHhcCCCC--CCCCCCc--eeeeCCCCcccccchHHHHHHHHHHHh
Q 047717 115 CRKWNKERHEKGEAAYD-DKIFEDLVRRFEKPDR--RNRWDSP--LFELCPYKDAIENSSAAILDAVAYLTK 181 (303)
Q Consensus 115 ~~~R~~~R~~~~~~~~~-~e~~~~l~~r~E~P~~--~~rwd~p--l~~i~~~~~~~~~~~~~~~ei~~~l~~ 181 (303)
..+|...|....+...+ +++...+..|.+.... ...|..+ -++++++ ...++++++.|.+
T Consensus 151 Ra~Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts-------~l~ieevv~~I~~ 215 (217)
T TIGR00017 151 RAKRRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTS-------NLSIDEVVEKILE 215 (217)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECC-------CCCHHHHHHHHHH
Confidence 87777777542212233 5777777777654222 2224321 2445544 3446888877764
No 91
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.97 E-value=2.5e-09 Score=103.89 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=26.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAK 31 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~ 31 (303)
++|+|.|++||||||+|+.|+++|+..+++
T Consensus 285 ~ii~i~G~sgsGKst~a~~la~~l~~~~~d 314 (512)
T PRK13477 285 PIIAIDGPAGAGKSTVTRAVAKKLGLLYLD 314 (512)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 589999999999999999999999865443
No 92
>PRK04182 cytidylate kinase; Provisional
Probab=98.97 E-value=4.3e-10 Score=94.79 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=57.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC-CccCCCcccc--CCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE-ASFHLDRNQS--YASMPAEKNLRGVLRSEVDRSVSKDNIIIV 79 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~-~~~~~~~~~~--y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv 79 (303)
+|+|+|.|||||||+|+.|++.++...++.+-+...- ...+...... +.... ..+...+...+......+..+|+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Vi 79 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKYAEED--PEIDKEIDRRQLEIAEKEDNVVL 79 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHHhhcC--chHHHHHHHHHHHHHhcCCCEEE
Confidence 7999999999999999999999875422210000000 0011100000 00000 00111222222222214456777
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
|+... ++ +.+ .....+||+++|.+++.+|+..|..
T Consensus 80 ~g~~~--~~------~~~--~~~~~~V~l~a~~e~~~~Rl~~r~~ 114 (180)
T PRK04182 80 EGRLA--GW------MAK--DYADLKIWLKAPLEVRAERIAEREG 114 (180)
T ss_pred EEeec--ce------Eec--CCCCEEEEEECCHHHHHHHHHhccC
Confidence 87421 10 111 1245789999999999999998853
No 93
>PRK13976 thymidylate kinase; Provisional
Probab=98.96 E-value=6.2e-08 Score=84.27 Aligned_cols=139 Identities=17% Similarity=0.169 Sum_probs=81.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-C---CccccC----CCchhhH----HHH-HHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-L---DRNQSY----ASMPAEK----NLR-GVLRSEVD 68 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~---~~~~~y----~~~~~e~----~~r-~~l~~~v~ 68 (303)
.+|+|.|..||||||+++.|++.|...+-...++...+.+-. . -+.... .+...+. .-| ..+...+.
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~ 80 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVIL 80 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999764101244444332110 0 000000 1111111 011 12333456
Q ss_pred HhcCCCCEEEEcCCCCc----hH--------HHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHH
Q 047717 69 RSVSKDNIIIVDSLNSI----KG--------YRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFE 136 (303)
Q Consensus 69 ~~L~~~~~VIvD~~n~~----k~--------~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~ 136 (303)
.+|.+|.+||+|-..+. .+ +-+++...+. ...|..+||+++|++++.+|..+|.- +..+.+.+.
T Consensus 81 p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~-~~~PDl~i~Ldv~~e~a~~Ri~~~~~---e~~~~~~l~ 156 (209)
T PRK13976 81 PALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVV-DKYPDITFVLDIDIELSLSRADKNGY---EFMDLEFYD 156 (209)
T ss_pred HHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhh-CCCCCEEEEEeCCHHHHHHHhcccch---hcccHHHHH
Confidence 67789999999975431 11 1122222221 23689999999999999999864432 233567777
Q ss_pred HHHHHhcC
Q 047717 137 DLVRRFEK 144 (303)
Q Consensus 137 ~l~~r~E~ 144 (303)
++.+.|..
T Consensus 157 ~v~~~Y~~ 164 (209)
T PRK13976 157 KVRKGFRE 164 (209)
T ss_pred HHHHHHHH
Confidence 77777775
No 94
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.95 E-value=5.7e-09 Score=91.49 Aligned_cols=119 Identities=22% Similarity=0.326 Sum_probs=65.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc----------ccCCCchhhHHHHHHHHHHHH----
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN----------QSYASMPAEKNLRGVLRSEVD---- 68 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~----------~~y~~~~~e~~~r~~l~~~v~---- 68 (303)
+|.|+|++||||||+|+.|+..+.....+..+.+++.+++..... ..+.+..+...+...+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 588999999999999999999986411123445554444432111 112111111222222221111
Q ss_pred ------------------HhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 69 ------------------RSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 69 ------------------~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
..+....+||+||.+........+..+..-. .+.||+++|.+++.+|..+|..
T Consensus 81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~---D~~ifvd~~~~~~~~rl~~R~~ 151 (220)
T cd02025 81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFF---DFSIYVDADEDDIEKWYIKRFL 151 (220)
T ss_pred EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhC---CeEEEEECCHHHHHHHHHHHHH
Confidence 0134567999999764422111111122222 3489999999999888877743
No 95
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.94 E-value=2.5e-09 Score=84.30 Aligned_cols=106 Identities=24% Similarity=0.245 Sum_probs=55.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC--ccCCCccccCCCchhhHHHHHHHHHHHHHhc--CCCCEEE
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA--SFHLDRNQSYASMPAEKNLRGVLRSEVDRSV--SKDNIII 78 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~--~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L--~~~~~VI 78 (303)
+|+|+|+|||||||+|+.|++.++.. ++..|+. ...... ...............+...+.... .....+|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~-----~i~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 74 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFP-----VISMDDLIREPGWIE-RDDDEREYIDADIDLLDDILEQLQNKPDNDNWI 74 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCE-----EEEEHHHHCCGTHCH-GCTTCCHHHHHHHHHHHHHHHHHHETTT--EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCe-----EEEecceEEeccccc-cCcchhhHHHHHHHHHHHHHHhhhccCCCCeEE
Confidence 58999999999999999999998653 4555541 111110 011111111111223333333332 3567899
Q ss_pred EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHh
Q 047717 79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER 122 (303)
Q Consensus 79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R 122 (303)
+|+... .. .. + .. . ....+||+.++.+.+.+|..+|
T Consensus 75 i~g~~~-~~-~~-~-~~-~---~~~~~i~l~~~~~~~~~~~~~R 110 (121)
T PF13207_consen 75 IDGSYE-SE-ME-I-RL-P---EFDHVIYLDAPDEECRERRLKR 110 (121)
T ss_dssp EECCSC-HC-CH-S-CC-H---HGGCEEEEEEEEHHHHHHHHHH
T ss_pred EeCCCc-cc-hh-h-hh-h---cCCEEEEEECCCHHHHHHHHHH
Confidence 999432 11 11 1 00 1 1225889998888666555544
No 96
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.94 E-value=2.5e-09 Score=86.95 Aligned_cols=123 Identities=20% Similarity=0.202 Sum_probs=66.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCC-chhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYAS-MPAEKNLRGVLRSEVDRSVSKDNIIIVDS 81 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~-~~~e~~~r~~l~~~v~~~L~~~~~VIvD~ 81 (303)
+|+|+|.|||||||+|+.|++.++..+++.+ .+.......+.. ......++..+...... +..+..+|+||
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~-------~i~~e~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~Vidg 72 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG-------GIRTEEVGKLASEVAAIPEVRKALDERQRE-LAKKPGIVLEG 72 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccc-------cCCHHHHHHHHHHhcccHhHHHHHHHHHHH-HhhCCCEEEEe
Confidence 5899999999999999999999875422222 110000000000 00011233233323323 33445688898
Q ss_pred CCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHhc
Q 047717 82 LNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDD-KIFEDLVRRFE 143 (303)
Q Consensus 82 ~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~-e~~~~l~~r~E 143 (303)
... ++. + ......+||+.+|++.+.+|..+|.....+..++ +....+..+.+
T Consensus 73 ~~~--~~~-----~---~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~ 125 (147)
T cd02020 73 RDI--GTV-----V---FPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDE 125 (147)
T ss_pred eee--eeE-----E---cCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 531 110 1 1223468999999999999999864322223444 44444544433
No 97
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.91 E-value=8.9e-10 Score=87.36 Aligned_cols=107 Identities=23% Similarity=0.261 Sum_probs=56.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc---ccCCCchhhHHHHHHHHHHHHH---hcCCCCEE
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN---QSYASMPAEKNLRGVLRSEVDR---SVSKDNII 77 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~---~~y~~~~~e~~~r~~l~~~v~~---~L~~~~~V 77 (303)
|+|+|.|||||||+|+.|+++++... .+....+......... ..+..... .....+...+.. ....+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 76 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDII--RDIAPEEDIVDSIDDNPDWKENKRLDM--EFQDELLDSIIQAIRRMNKGRNI 76 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHH--HHHHHHTTSHSSHCCHHCCCCCCCSCH--HHHHHHHHHHHHHHHHHTTTSCE
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHH--HHHHHhcCCcccccccchhhhhhhhhh--hhHHHHHHHHHHhhcccccCCcE
Confidence 78999999999999999999972210 0000001000000000 11111111 111122222222 34677888
Q ss_pred EEcCCCCchHHHHHHHHHHHHcCCcEEE-EEEecCHHHHHHHHHHhhh
Q 047717 78 IVDSLNSIKGYRYELWCLARAAGIRYCV-LYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 78 IvD~~n~~k~~R~~l~~~ak~~~~~~~v-I~l~~~~e~~~~R~~~R~~ 124 (303)
|+|+...... ......+. ||++||++++.+|..+|..
T Consensus 77 iid~~~~~~~----------~~~~~~~~~i~L~~~~e~~~~R~~~R~~ 114 (129)
T PF13238_consen 77 IIDGILSNLE----------LERLFDIKFIFLDCSPEELRKRLKKRGR 114 (129)
T ss_dssp EEEESSEEEC----------ETTEEEESSEEEE--HHHHHHHHHCTTT
T ss_pred EEecccchhc----------ccccceeeEEEEECCHHHHHHHHHhCCC
Confidence 9998654321 11123334 9999999999999999875
No 98
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.91 E-value=8e-09 Score=89.67 Aligned_cols=163 Identities=13% Similarity=0.143 Sum_probs=78.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccC---------------CccEEEecCCccCC-CccccCCCc-hhhHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEA---------------KETVRIIDEASFHL-DRNQSYASM-PAEKNLRGVLR 64 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~---------------~~~v~~~~~~~~~~-~~~~~y~~~-~~e~~~r~~l~ 64 (303)
.+|+|+|+|||||||+++.|.+....... +.+.+.++.+.+.. .....|... .....+.+...
T Consensus 14 ~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~YGt~~ 93 (206)
T PRK14738 14 LLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYYGVPK 93 (206)
T ss_pred eEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCceecCCH
Confidence 47899999999999999999764211100 00011111100000 000000000 00011112223
Q ss_pred HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEe-cCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q 047717 65 SEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCD-LEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFE 143 (303)
Q Consensus 65 ~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~-~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E 143 (303)
..+...+..|.+||+|... .+ +.. .++......+||+. ++.+++.+|+.+|+.+ -..++..++..-|+
T Consensus 94 ~~i~~~~~~g~~vi~~~~~--~g-~~~----l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~----~~~~~~~Rl~~~~~ 162 (206)
T PRK14738 94 APVRQALASGRDVIVKVDV--QG-AAS----IKRLVPEAVFIFLAPPSMDELTRRLELRRTE----SPEELERRLATAPL 162 (206)
T ss_pred HHHHHHHHcCCcEEEEcCH--HH-HHH----HHHhCCCeEEEEEeCCCHHHHHHHHHHcCCC----CHHHHHHHHHHHHH
Confidence 4677778889999998732 22 222 23333344445543 4566889999988641 12345456655554
Q ss_pred CCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717 144 KPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTK 181 (303)
Q Consensus 144 ~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~ 181 (303)
+....+.+ ..+.++.+ +++ +...+++.+.|.+
T Consensus 163 e~~~~~~~--~~~iId~~-~~~---e~v~~~i~~~l~~ 194 (206)
T PRK14738 163 ELEQLPEF--DYVVVNPE-DRL---DEAVAQIMAIISA 194 (206)
T ss_pred HHhcccCC--CEEEECCC-CCH---HHHHHHHHHHHHH
Confidence 22211112 24556643 222 3345666666654
No 99
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.91 E-value=2.5e-08 Score=85.17 Aligned_cols=130 Identities=14% Similarity=0.201 Sum_probs=71.6
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCC---------------ccEEEecCCccCCC-ccccCCCc-hhhHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAK---------------ETVRIIDEASFHLD-RNQSYASM-PAEKNLRGVL 63 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~---------------~~v~~~~~~~~~~~-~~~~y~~~-~~e~~~r~~l 63 (303)
+.+|+|+|+|||||||+++.|.+.+...... .+.+.++.+.|.-. ....|-.. .-...+.+.-
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt~ 83 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGTP 83 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecCc
Confidence 4689999999999999999998876432110 11111111111000 00000000 0001222344
Q ss_pred HHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC-HHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 047717 64 RSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE-EDHCRKWNKERHEKGEAAYDDKIFEDLVRR 141 (303)
Q Consensus 64 ~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~-~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r 141 (303)
.+.+...+..|.++|+|. -..|.++ +.+.......+||+.+| .++..+|+.+|+. .+++.++....+
T Consensus 84 ~~~i~~~~~~g~~~i~d~--~~~g~~~----l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~-----~s~e~i~~Rl~~ 151 (186)
T PRK14737 84 KAFIEDAFKEGRSAIMDI--DVQGAKI----IKEKFPERIVTIFIEPPSEEEWEERLIHRGT-----DSEESIEKRIEN 151 (186)
T ss_pred HHHHHHHHHcCCeEEEEc--CHHHHHH----HHHhCCCCeEEEEEECCCHHHHHHHHHhcCC-----CCHHHHHHHHHH
Confidence 456778888999999997 2344332 22233333468899885 6889999998854 244445444444
No 100
>PLN02674 adenylate kinase
Probab=98.91 E-value=7.1e-09 Score=91.90 Aligned_cols=122 Identities=11% Similarity=0.121 Sum_probs=70.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC----ccCCCccccCCC-c-hhhHHHHHHHHHHHHHhcCCCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA----SFHLDRNQSYAS-M-PAEKNLRGVLRSEVDRSVSKDN 75 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~----~~~~~~~~~y~~-~-~~e~~~r~~l~~~v~~~L~~~~ 75 (303)
+.|+|.|+|||||||+|+.|++.++..+++..-++..+. .++..-...... . .........+...+.. ...+.
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~-~~~~~ 110 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK-PSCQK 110 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhC-cCcCC
Confidence 358999999999999999999999765322211111100 000000000000 0 0011111122222211 12346
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhh
Q 047717 76 IIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 76 ~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
.+|+||......+-..|.......+ ...++|++++|.+++.+|+..|..
T Consensus 111 g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~ 160 (244)
T PLN02674 111 GFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWI 160 (244)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcccc
Confidence 7999998877776666655444333 456799999999999999998853
No 101
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.90 E-value=5.7e-09 Score=89.02 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
+|.|+|.|||||||+|+.|++.+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999974
No 102
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.89 E-value=4.2e-08 Score=86.67 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=89.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccC---CccEEEecCCccCC--------------CccccCCCchhh--HHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEA---KETVRIIDEASFHL--------------DRNQSYASMPAE--KNLRGV 62 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~---~~~v~~~~~~~~~~--------------~~~~~y~~~~~e--~~~r~~ 62 (303)
.+|++.|..|||||++|++||+.|+..++ ..+.+.++..+... +-..+|.+...+ ...+..
T Consensus 72 kvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q~r 151 (393)
T KOG3877|consen 72 KVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQDR 151 (393)
T ss_pred eEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHHHH
Confidence 48999999999999999999999987642 45556665432211 001234333211 111111
Q ss_pred --------HHHHHHHhcCCCCEEEEcCCCC--------------c-hHHHHHHHHHH----HHcCCcEEEEEEecCHHHH
Q 047717 63 --------LRSEVDRSVSKDNIIIVDSLNS--------------I-KGYRYELWCLA----RAAGIRYCVLYCDLEEDHC 115 (303)
Q Consensus 63 --------l~~~v~~~L~~~~~VIvD~~n~--------------~-k~~R~~l~~~a----k~~~~~~~vI~l~~~~e~~ 115 (303)
...++...|+.|..||++-+.+ + ++++.....+- -..-.|+.|||+++|.+.|
T Consensus 152 ~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv~~v 231 (393)
T KOG3877|consen 152 IYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPVNKV 231 (393)
T ss_pred HHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCcHHH
Confidence 2246778899999999986542 2 23333332221 2234688999999999999
Q ss_pred HHHHHHhhhcCC-CCCCHHHHHHHHHHhcC
Q 047717 116 RKWNKERHEKGE-AAYDDKIFEDLVRRFEK 144 (303)
Q Consensus 116 ~~R~~~R~~~~~-~~~~~e~~~~l~~r~E~ 144 (303)
.+++.+|+...+ ..+++..+.++.+.|..
T Consensus 232 ~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~ 261 (393)
T KOG3877|consen 232 LENIKRRGNTDEIKTVSEAYLKDIEESYKD 261 (393)
T ss_pred HHHHHhcCCCcceeehhHHHHHHHHHHHHH
Confidence 999999986422 12455566666655543
No 103
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.88 E-value=9.7e-09 Score=88.38 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=63.5
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec---CC---------ccC----------CCc----cccCCCch
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID---EA---------SFH----------LDR----NQSYASMP 54 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~---~~---------~~~----------~~~----~~~y~~~~ 54 (303)
|++|.|+|.|||||||+|+.|++.++...++.+.+..+ .. .|+ +++ ...|.+..
T Consensus 1 ~~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~ 80 (195)
T PRK14730 1 QRRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPE 80 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHH
Confidence 67899999999999999999999877643332221100 00 010 000 01222222
Q ss_pred hhHHHHHHHHH----HHHHh---cCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 55 AEKNLRGVLRS----EVDRS---VSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 55 ~e~~~r~~l~~----~v~~~---L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
.-+.+.+.+.. .+.+. ......||+|.......- +. + .-..+|+++||.+++.+|+.+|.
T Consensus 81 ~~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pll~E~~---~~---~---~~D~ii~V~a~~e~r~~Rl~~R~ 147 (195)
T PRK14730 81 ERRWLENLIHPYVRERFEEELAQLKSNPIVVLVIPLLFEAK---LT---D---LCSEIWVVDCSPEQQLQRLIKRD 147 (195)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeHHhcCcc---hH---h---CCCEEEEEECCHHHHHHHHHHcC
Confidence 11222222221 22222 223568999986543321 11 1 12358999999999999999984
No 104
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.88 E-value=7.6e-09 Score=91.16 Aligned_cols=112 Identities=14% Similarity=0.043 Sum_probs=67.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc-CCCccc-------cCCCc---hhhHHHHHHHHHHHHHhc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF-HLDRNQ-------SYASM---PAEKNLRGVLRSEVDRSV 71 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~-~~~~~~-------~y~~~---~~e~~~r~~l~~~v~~~L 71 (303)
-|+|.|+|||||||+|+.|++.++.. ++..++.-- .+.... .|.+. .....+...+...+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~-----~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~ 82 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLK-----HINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVT 82 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc-----EEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhc
Confidence 39999999999999999999998764 333332100 000000 00000 011222223443443332
Q ss_pred -CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 72 -SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 72 -~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
.....+|+||.......+..+.. ...+..+|++++|.+++.+|+..|.
T Consensus 83 ~~~~~g~iLDGfPRt~~Qa~~l~~----~~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 83 DDCFKGFILDGFPRNLKQCKELGK----ITNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred cccCceEEEecCCCCHHHHHHHHh----cCCCCEEEEEeCCHHHHHHHHHcCc
Confidence 24578999997666555544432 2456779999999999999999885
No 105
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.88 E-value=1.1e-08 Score=104.35 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=44.0
Q ss_pred EEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHH
Q 047717 104 CVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLT 180 (303)
Q Consensus 104 ~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~ 180 (303)
+.||++++.++..+|-..+... ..-+++++++..|.+. ++ |--+|+-..+.+ ..++++...++++++.+.
T Consensus 157 ~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~--d~-R~~~pl~~~~da-~~idts~~~~~~v~~~i~ 226 (712)
T PRK09518 157 VRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEA--DS-KVTSFLSAADGV-TTLDNSDLDFDETLDLLI 226 (712)
T ss_pred eEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhh--cc-cccCCCCCCCCe-EEEECCCCCHHHHHHHHH
Confidence 5899999999966665555431 2246888999998886 44 777776444322 233444445566655554
No 106
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.87 E-value=1.5e-08 Score=85.94 Aligned_cols=138 Identities=13% Similarity=0.080 Sum_probs=72.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC------ccccCCCch--hhHHHHHHHHHHHH------
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD------RNQSYASMP--AEKNLRGVLRSEVD------ 68 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~------~~~~y~~~~--~e~~~r~~l~~~v~------ 68 (303)
+|.|+|.|||||||+|+.|++.+...+. .+..++.+.+... ....|+... ....+.+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~--~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~ 78 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGI--GPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVEL 78 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCC--CEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeec
Confidence 5899999999999999999999975432 3333333333221 111222211 11222222221110
Q ss_pred ---------------HhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHH-HHHHHHHhhhcCCCCCCH
Q 047717 69 ---------------RSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDH-CRKWNKERHEKGEAAYDD 132 (303)
Q Consensus 69 ---------------~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~-~~~R~~~R~~~~~~~~~~ 132 (303)
.......+||+||.+... .++..+ -.+.||++++.+. ++.|-..|.........+
T Consensus 79 p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~---~~l~~~------~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~ 149 (179)
T cd02028 79 PIYDFRTGKRRGYRKLKLPPSGVVILEGIYALN---ERLRSL------LDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAE 149 (179)
T ss_pred ccceeECCccCCCceEEeCCCCEEEEecHHhcC---HhHHhh------cCEEEEEeCCccHHHHHHHHHHhHHhhCCCHH
Confidence 012245789999976542 233222 3569999999997 766666565321112234
Q ss_pred HHHHHHHHHhcCCCCCCCCCCc
Q 047717 133 KIFEDLVRRFEKPDRRNRWDSP 154 (303)
Q Consensus 133 e~~~~l~~r~E~P~~~~rwd~p 154 (303)
+++.. . .+ .|...+.|..|
T Consensus 150 ~~i~~-~-~~-~~~~~~~~~~~ 168 (179)
T cd02028 150 LTILM-W-PS-VPSGEEFIIPP 168 (179)
T ss_pred HHhhh-c-cc-ccCchhhcCCC
Confidence 55544 2 22 24444445433
No 107
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.87 E-value=1.2e-08 Score=86.74 Aligned_cols=151 Identities=22% Similarity=0.173 Sum_probs=83.7
Q ss_pred EEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC----cc---ccCCCch-hhH----HHH-HHHHHHHHHhcC
Q 047717 6 ICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD----RN---QSYASMP-AEK----NLR-GVLRSEVDRSVS 72 (303)
Q Consensus 6 l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~----~~---~~y~~~~-~e~----~~r-~~l~~~v~~~L~ 72 (303)
|.|+.||||||+++.|+++|...+ ..++...+..-... +. .....+. ... .-| ..+...+..++.
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~--~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~ 78 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKG--YKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALK 78 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTT--EEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcC--CcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 579999999999999999998864 33333222211100 00 0011110 000 001 122234556778
Q ss_pred CCCEEEEcCCCC-------chH--HHHHHHHHHHHcC--CcEEEEEEecCHHHHHHHHHHhhhcC-CCCCCHHHHHHHHH
Q 047717 73 KDNIIIVDSLNS-------IKG--YRYELWCLARAAG--IRYCVLYCDLEEDHCRKWNKERHEKG-EAAYDDKIFEDLVR 140 (303)
Q Consensus 73 ~~~~VIvD~~n~-------~k~--~R~~l~~~ak~~~--~~~~vI~l~~~~e~~~~R~~~R~~~~-~~~~~~e~~~~l~~ 140 (303)
.|.+||+|-..+ ..+ ....++.+.+... .|..++|++++++++.+|...|+... ...-..+.+.++..
T Consensus 79 ~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~~ 158 (186)
T PF02223_consen 79 RGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVRE 158 (186)
T ss_dssp TTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHHH
T ss_pred CCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHHH
Confidence 999999996321 011 0123344444443 78899999999999999999997611 11112356666666
Q ss_pred HhcCCCCCCCCCCceeeeCCC
Q 047717 141 RFEKPDRRNRWDSPLFELCPY 161 (303)
Q Consensus 141 r~E~P~~~~rwd~pl~~i~~~ 161 (303)
.|..-.. +....++++++
T Consensus 159 ~y~~l~~---~~~~~~iid~~ 176 (186)
T PF02223_consen 159 AYLELAK---DPNNWVIIDAS 176 (186)
T ss_dssp HHHHHHH---TTTTEEEEETT
T ss_pred HHHHHHc---CCCCEEEEECC
Confidence 6654221 33346777764
No 108
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.87 E-value=2.6e-08 Score=86.43 Aligned_cols=110 Identities=21% Similarity=0.281 Sum_probs=61.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc---------cccCCCc--hhhHHHHHHHHHHHH--
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR---------NQSYASM--PAEKNLRGVLRSEVD-- 68 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~---------~~~y~~~--~~e~~~r~~l~~~v~-- 68 (303)
.+|.|+|.+||||||+++.|++.++. ..+.+++.+.+.... ...|... .....+...+.....
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~~----~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 82 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELGD----ESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGK 82 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCC----CceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCC
Confidence 48999999999999999999999842 233333333222110 0011111 011122222221100
Q ss_pred ----------------H--hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 69 ----------------R--SVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 69 ----------------~--~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
. .+....+||+||...... ..+. ..-..+||+++|.+++++|...|.
T Consensus 83 ~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~--~~~~------~~~d~~I~v~~~~~~~~~R~~~Rd 147 (209)
T PRK05480 83 AIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED--ERLR------DLMDIKIFVDTPLDIRLIRRLKRD 147 (209)
T ss_pred ccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc--hhHh------hhhceeEEEeCChhHHHHHHHhhc
Confidence 0 012345899999764321 1111 112358999999999999988886
No 109
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=98.87 E-value=5.9e-09 Score=94.99 Aligned_cols=164 Identities=18% Similarity=0.292 Sum_probs=108.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIII 78 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VI 78 (303)
|-||++|++|+||||++-+|.++|... +...+.+|-+.+ ++.++-.|+....++.+| .+.. +.+.. ..|-+.|
T Consensus 51 ctvw~tglsgagkttis~ale~~l~~~--gipcy~ldgdnirhgl~knlgfs~edreenir-riae-vaklfadaglvci 126 (627)
T KOG4238|consen 51 CTVWLTGLSGAGKTTISFALEEYLVSH--GIPCYSLDGDNIRHGLNKNLGFSPEDREENIR-RIAE-VAKLFADAGLVCI 126 (627)
T ss_pred eeEEeeccCCCCcceeehHHHHHHHhc--CCcccccCcchhhhhhhhccCCCchhHHHHHH-HHHH-HHHHHhcCCceee
Confidence 679999999999999999999999876 344555554432 334455677766777777 4443 33444 4555544
Q ss_pred EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh----hcCCCCCCHHHHHHHHHHhcCCCCCCCCCCc
Q 047717 79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH----EKGEAAYDDKIFEDLVRRFEKPDRRNRWDSP 154 (303)
Q Consensus 79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~----~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~p 154 (303)
......+...|...+.+....+.++.-||+++|.++|.+|..+.- +.+ .-.-|..+-..||+|.. |
T Consensus 127 tsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkarag----ei~gftgids~ye~pe~------~ 196 (627)
T KOG4238|consen 127 TSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAG----EIKGFTGIDSDYEKPET------P 196 (627)
T ss_pred ehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhcc----ccccccccccccCCCCC------h
Confidence 444444555677777777778999999999999999999976432 111 11224455667898774 6
Q ss_pred eeeeCCCCcccccchHHHHHHHHHHHhc
Q 047717 155 LFELCPYKDAIENSSAAILDAVAYLTKK 182 (303)
Q Consensus 155 l~~i~~~~~~~~~~~~~~~ei~~~l~~~ 182 (303)
-+++.++.+.. ....+.+++.|-++
T Consensus 197 e~vl~t~~~~v---~~cvqqvve~lq~~ 221 (627)
T KOG4238|consen 197 ERVLKTNLSTV---SDCVQQVVELLQEQ 221 (627)
T ss_pred hHHhhcCCchH---HHHHHHHHHHHHhc
Confidence 66676654443 23456666666553
No 110
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.87 E-value=5.2e-09 Score=105.76 Aligned_cols=162 Identities=22% Similarity=0.219 Sum_probs=93.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEE-------------ecCC----------ccCCCccccCCCc-h---
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRI-------------IDEA----------SFHLDRNQSYASM-P--- 54 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~-------------~~~~----------~~~~~~~~~y~~~-~--- 54 (303)
|.|.|.|++||||||+|+.|+++|+..+++...++ ++++ .+.......|-+. .
T Consensus 443 ~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (661)
T PRK11860 443 PVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDVTD 522 (661)
T ss_pred ceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEchh
Confidence 68999999999999999999999987643322111 0110 0000000111111 0
Q ss_pred ---------------hhHHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCC-----cEEEEEEecCHHH
Q 047717 55 ---------------AEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGI-----RYCVLYCDLEEDH 114 (303)
Q Consensus 55 ---------------~e~~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-----~~~vI~l~~~~e~ 114 (303)
....+|..+.... +.+.+...||+|| +..|+ ..+.||+++++++
T Consensus 523 ~i~~~~v~~~~s~~a~~~~vr~~l~~~q-r~~~~~~~~v~eG---------------Rdigtvv~p~a~~kifl~a~~~~ 586 (661)
T PRK11860 523 AIRTEAAGMGASRVSALPAVRAALLALQ-RSFRRLPGLVADG---------------RDMGTVIFPDAALKVFLTASAEA 586 (661)
T ss_pred hhCcHHHHHHHHHHhCCHHHHHHHHHHH-HHHhhCCCEEEEC---------------CCCccEECCCCCeEEEEECChhH
Confidence 1134454444333 3344445689998 23332 3368999999998
Q ss_pred -HHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHHhc
Q 047717 115 -CRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKK 182 (303)
Q Consensus 115 -~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~~ 182 (303)
+++|..+-.+.+.+..-+++++++..|.+. +.+|.-+||.....+ ..++++...++|+++.|++.
T Consensus 587 Ra~Rr~~~~~~~~~~~~~~~~~~~~~~Rd~~--d~~R~~~pl~~~~da-~~idts~~~~~~v~~~i~~~ 652 (661)
T PRK11860 587 RAERRYKQLISKGISANIADLLADLEARDAR--DTQRSVAPLKPAQDA-LLLDNSDLTIEQAVAQVLDW 652 (661)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhHH--hhcCCCCCCccCCCE-EEEECCCCCHHHHHHHHHHH
Confidence 455554322222222245888999998775 567888887654322 33444555677777777654
No 111
>PRK14526 adenylate kinase; Provisional
Probab=98.87 E-value=2.3e-08 Score=87.05 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=62.1
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc----cCC-----CccccCCCchhhHHHHHHHHHHHHHhc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS----FHL-----DRNQSYASMPAEKNLRGVLRSEVDRSV 71 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~----~~~-----~~~~~y~~~~~e~~~r~~l~~~v~~~L 71 (303)
|. |+|.|+|||||||+|+.|++.++..++...-++..... .+. ...+.+.. .......+...+...
T Consensus 1 m~-i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvp---d~~~~~lv~~~l~~~- 75 (211)
T PRK14526 1 MK-LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVP---DSITIKIVEDKINTI- 75 (211)
T ss_pred CE-EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCC---hHHHHHHHHHHHhcc-
Confidence 54 77899999999999999999887543221111111000 000 00000110 111111233233222
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
.....+|+||......+-..|. +.. ....+|++++|.+++.+|+..|.
T Consensus 76 ~~~~g~ilDGfPR~~~Qa~~l~---~~~-~~~~vi~l~~~~~~~~~Rl~~R~ 123 (211)
T PRK14526 76 KNNDNFILDGFPRNINQAKALD---KFL-PNIKIINFLIDEELLIKRLSGRR 123 (211)
T ss_pred cccCcEEEECCCCCHHHHHHHH---Hhc-CCCEEEEEECCHHHHHHHHHCCC
Confidence 2346688899765554433332 212 22457889999999999999885
No 112
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.87 E-value=5.7e-09 Score=96.11 Aligned_cols=145 Identities=10% Similarity=0.096 Sum_probs=76.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---ccCCCccccCCCchhhHHHHHHHHHHHHHhcC-CCCEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVS-KDNII 77 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~-~~~~V 77 (303)
..|+|+|+|||||||+++.|++.++..+ +-.|.. ..+......+. ...+..++..-...+.+.+. .+..|
T Consensus 134 ~~I~l~G~~GsGKStvg~~La~~Lg~~~-----id~D~~i~~~~G~~i~ei~~-~~G~~~fr~~e~~~l~~ll~~~~~~V 207 (309)
T PRK08154 134 RRIALIGLRGAGKSTLGRMLAARLGVPF-----VELNREIEREAGLSVSEIFA-LYGQEGYRRLERRALERLIAEHEEMV 207 (309)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCE-----EeHHHHHHHHhCCCHHHHHH-HHCHHHHHHHHHHHHHHHHhhCCCEE
Confidence 3799999999999999999999997642 322211 11111111111 01233444333333444443 34566
Q ss_pred EEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcC---CCCCCHHHHHHHHHHhcCCCCCCCCCCc
Q 047717 78 IVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKG---EAAYDDKIFEDLVRRFEKPDRRNRWDSP 154 (303)
Q Consensus 78 IvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~---~~~~~~e~~~~l~~r~E~P~~~~rwd~p 154 (303)
|..|...... ...+..... ..++|||.+|++++.+|+.+|.... ...-..+.+..+..+.++.. ...
T Consensus 208 I~~Ggg~v~~--~~~~~~l~~---~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y-----~~a 277 (309)
T PRK08154 208 LATGGGIVSE--PATFDLLLS---HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLY-----ARA 277 (309)
T ss_pred EECCCchhCC--HHHHHHHHh---CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHH-----HhC
Confidence 6665442211 011111122 3469999999999999998875311 01112355666655544311 113
Q ss_pred eeeeCCCC
Q 047717 155 LFELCPYK 162 (303)
Q Consensus 155 l~~i~~~~ 162 (303)
.++++++.
T Consensus 278 d~~I~t~~ 285 (309)
T PRK08154 278 DAVVDTSG 285 (309)
T ss_pred CEEEECCC
Confidence 46777653
No 113
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.85 E-value=1.1e-08 Score=100.96 Aligned_cols=166 Identities=14% Similarity=0.094 Sum_probs=88.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS 81 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~ 81 (303)
+.|+|+|+|||||||+++.|++.++..+++.+..+.. ..+..-.+.|. ...|..+|+.-...+...+.....||.-|
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~--~~g~si~eif~-~~Ge~~FR~~E~~~l~~~~~~~~~VIs~G 83 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIER--EIGMSIPSYFE-EYGEPAFREVEADVVADMLEDFDGIFSLG 83 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHH--HHCcCHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCeEEECC
Confidence 4799999999999999999999998754333322111 11221122332 22455666433344444444445555433
Q ss_pred CC--CchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC-CCCCHHHHHHHHHHhcCCCCCCCCCCceeee
Q 047717 82 LN--SIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE-AAYDDKIFEDLVRRFEKPDRRNRWDSPLFEL 158 (303)
Q Consensus 82 ~n--~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~-~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i 158 (303)
.- .....|..|....+..+ ++||+++|.+++.+|+..+..++- ...+.+.+.+++.+-++ ... ..-.+++
T Consensus 84 GG~v~~~~n~~~L~~~~~~~g---~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~-~Y~---~~Ad~~i 156 (542)
T PRK14021 84 GGAPMTPSTQHALASYIAHGG---RVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDP-VFR---QVANVHV 156 (542)
T ss_pred CchhCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHH-HHH---hhCCEEE
Confidence 22 23333444433445554 499999999999999864432110 01134556666554321 110 1134667
Q ss_pred CCCCcccccchHHHHHHHHHHH
Q 047717 159 CPYKDAIENSSAAILDAVAYLT 180 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~ei~~~l~ 180 (303)
+++...+ ++..++|++.+.
T Consensus 157 ~~~~~~~---~~~~~~i~~~~~ 175 (542)
T PRK14021 157 HTRGLTP---QAAAKKLIDMVA 175 (542)
T ss_pred ECCCCCH---HHHHHHHHHHHH
Confidence 6543332 234445555443
No 114
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.85 E-value=3e-09 Score=88.87 Aligned_cols=111 Identities=20% Similarity=0.260 Sum_probs=60.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC-CccCCCccc--cCCCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE-ASFHLDRNQ--SYASMPAEKNLRGVLRSEVDRSVSKDNIII 78 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~-~~~~~~~~~--~y~~~~~e~~~r~~l~~~v~~~L~~~~~VI 78 (303)
++|+|+|.|||||||+|+.|++.++...++.+.++..- ...+..... .+... ...+...+...+......+..+|
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~V 78 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEE--NPEIDKKIDRRIHEIALKEKNVV 78 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhc--CcHHHHHHHHHHHHHHhcCCCEE
Confidence 37999999999999999999999875422211000000 001110000 01000 01122233333333333445677
Q ss_pred EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
+|+... ++ ..+ +....+||++||.+++.+|..+|..
T Consensus 79 i~g~~~--~~------~~~--~~~d~~v~v~a~~~~r~~R~~~R~~ 114 (171)
T TIGR02173 79 LESRLA--GW------IVR--EYADVKIWLKAPLEVRARRIAKREG 114 (171)
T ss_pred EEeccc--ce------eec--CCcCEEEEEECCHHHHHHHHHHccC
Confidence 888532 11 011 2233689999999999999998854
No 115
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.84 E-value=9.3e-09 Score=88.40 Aligned_cols=53 Identities=11% Similarity=0.079 Sum_probs=35.4
Q ss_pred CEEEEcCCCCchH-HHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q 047717 75 NIIIVDSLNSIKG-YRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRF 142 (303)
Q Consensus 75 ~~VIvD~~n~~k~-~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~ 142 (303)
..||+|+...... ++ ..-..+|+++||.+++.+|+.+|. .++.+.+.....++
T Consensus 107 ~~vv~e~pll~e~~~~----------~~~D~vi~V~a~~e~~~~Rl~~R~-----~~s~e~~~~ri~~Q 160 (194)
T PRK00081 107 PYVVLDIPLLFENGLE----------KLVDRVLVVDAPPETQLERLMARD-----GLSEEEAEAIIASQ 160 (194)
T ss_pred CEEEEEehHhhcCCch----------hhCCeEEEEECCHHHHHHHHHHcC-----CCCHHHHHHHHHHh
Confidence 6899999764322 11 112369999999999999999884 34655555544443
No 116
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.82 E-value=4.8e-08 Score=84.50 Aligned_cols=126 Identities=21% Similarity=0.236 Sum_probs=69.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC--------cc-ccCCCc--hhhHHHHHHHHHHHH---
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD--------RN-QSYASM--PAEKNLRGVLRSEVD--- 68 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~--------~~-~~y~~~--~~e~~~r~~l~~~v~--- 68 (303)
+|.|.|.+||||||+|+.|.+.|+.. .+.++..+.+... +. ..|+.. .+...+...+.....
T Consensus 10 iIgIaG~SgSGKTTva~~l~~~~~~~----~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLGVE----KVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcC----cceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 89999999999999999999999843 2333332222111 00 111111 112222222322110
Q ss_pred -----------------HhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCC
Q 047717 69 -----------------RSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYD 131 (303)
Q Consensus 69 -----------------~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~ 131 (303)
..+....+||++|....-. ..+. +.+ ...||+++|.++|..|-..|.-.......
T Consensus 86 v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr---~~~---d~kIfvdtd~D~RliRri~RD~~~rg~~~ 157 (218)
T COG0572 86 VDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLR---DLM---DLKIFVDTDADVRLIRRIKRDVQERGRDL 157 (218)
T ss_pred ccccccchhcccccCCccccCCCcEEEEeccccccc--HHHH---hhc---CEEEEEeCCccHHHHHHHHHHHHHhCCCH
Confidence 0123568999999764322 1222 222 34999999999988887777543222334
Q ss_pred HHHHHHHHH
Q 047717 132 DKIFEDLVR 140 (303)
Q Consensus 132 ~e~~~~l~~ 140 (303)
+.++++...
T Consensus 158 e~vi~qy~~ 166 (218)
T COG0572 158 ESVIEQYVK 166 (218)
T ss_pred HHHHHHHHH
Confidence 555555543
No 117
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.81 E-value=6.7e-08 Score=92.26 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=73.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccc-CCccEEE------ecCCccCCCccccCC--------------CchhhHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESE-AKETVRI------IDEASFHLDRNQSYA--------------SMPAEKNLR 60 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~-~~~~v~~------~~~~~~~~~~~~~y~--------------~~~~e~~~r 60 (303)
.+|+++|+|||||||+|..|+..++... +..|.+. ++++.......+.|. ....+..+.
T Consensus 256 ~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~vi~ 335 (475)
T PRK12337 256 LHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAEVLR 335 (475)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchHHHHH
Confidence 4899999999999999999999997641 1222110 111100000000010 001111111
Q ss_pred ----------HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCH-HHHHHHHHHhhh
Q 047717 61 ----------GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEE-DHCRKWNKERHE 124 (303)
Q Consensus 61 ----------~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~-e~~~~R~~~R~~ 124 (303)
..+...+.+.+..|..||+||.+..+++.. .+...+..++.+.|.++. +...+|...|..
T Consensus 336 Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~----~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~ 406 (475)
T PRK12337 336 GFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLR----HPYQAGALVVPMLVTLPDEALHRRRFELRDR 406 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHH----HHHhcCCceEEEEEEECCHHHHHHHHHHHhh
Confidence 124456778899999999999999999865 233445566666777765 458899999976
No 118
>PRK05439 pantothenate kinase; Provisional
Probab=98.81 E-value=3e-08 Score=90.80 Aligned_cols=119 Identities=23% Similarity=0.316 Sum_probs=66.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc----------ccCCCchhhHHHHHHHHHHHH----
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN----------QSYASMPAEKNLRGVLRSEVD---- 68 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~----------~~y~~~~~e~~~r~~l~~~v~---- 68 (303)
+|.|+|.|||||||+|+.|++.++....+..+.++..+++..... ..+.++.+...+...+.....
T Consensus 88 iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~G~~~ 167 (311)
T PRK05439 88 IIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKSGKPN 167 (311)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHcCCCe
Confidence 789999999999999999999886432233455555444433110 111111112222222221100
Q ss_pred ------------------HhcCCCCEEEEcCCCCchHHHH-HHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 69 ------------------RSVSKDNIIIVDSLNSIKGYRY-ELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 69 ------------------~~L~~~~~VIvD~~n~~k~~R~-~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
..+....+||++|.+....-.- .+..+..- -...|||+++.+.+.+|..+|-.
T Consensus 168 v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~---~D~~IfVda~~~~~~~w~i~R~~ 239 (311)
T PRK05439 168 VTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDF---FDFSIYVDADEDLIEKWYIERFL 239 (311)
T ss_pred EEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHh---CCEEEEEECCHHHHHHHHHHHHH
Confidence 0123457899999775421110 11111122 23589999999999998888753
No 119
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.80 E-value=1.7e-08 Score=83.08 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=61.8
Q ss_pred EEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---ccCCC-c-cc---cC--CC-chhhHHHHHHHHHHHHHhcCCC
Q 047717 6 ICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---SFHLD-R-NQ---SY--AS-MPAEKNLRGVLRSEVDRSVSKD 74 (303)
Q Consensus 6 l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---~~~~~-~-~~---~y--~~-~~~e~~~r~~l~~~v~~~L~~~ 74 (303)
|.|+|||||||+|+.|+++++..+ +.+++. ...-. . .. .+ .. ......+-..+...+.+. ...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~-----is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~-~~~ 74 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVH-----ISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQP-PCN 74 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEE-----EEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSG-GTT
T ss_pred CcCCCCCChHHHHHHHHHhcCcce-----echHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh-ccc
Confidence 689999999999999999987532 222210 00000 0 00 00 00 001122222333333333 456
Q ss_pred CEEEEcCCCCchHHHHHHHHHHH-HcCCcEEEEEEecCHHHHHHHHHH
Q 047717 75 NIIIVDSLNSIKGYRYELWCLAR-AAGIRYCVLYCDLEEDHCRKWNKE 121 (303)
Q Consensus 75 ~~VIvD~~n~~k~~R~~l~~~ak-~~~~~~~vI~l~~~~e~~~~R~~~ 121 (303)
..+|+||.......-..|..... ....+.++|+++||.+.+.+|...
T Consensus 75 ~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 75 RGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp TEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred ceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 88999998776665555544322 344567899999999999999875
No 120
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.79 E-value=2.3e-08 Score=86.43 Aligned_cols=71 Identities=10% Similarity=-0.004 Sum_probs=42.4
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCc
Q 047717 75 NIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSP 154 (303)
Q Consensus 75 ~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~p 154 (303)
..|++|.......- ....-..+||++||.++..+|..+|. .++.+.+.....++-.+. .+....
T Consensus 108 ~~vv~e~plL~e~g---------~~~~~D~vi~V~a~~e~ri~Rl~~R~-----g~s~e~~~~ri~~Q~~~~--~k~~~a 171 (200)
T PRK14734 108 KVAVYDMPLLVEKG---------LDRKMDLVVVVDVDVEERVRRLVEKR-----GLDEDDARRRIAAQIPDD--VRLKAA 171 (200)
T ss_pred CEEEEEeeceeEcC---------ccccCCeEEEEECCHHHHHHHHHHcC-----CCCHHHHHHHHHhcCCHH--HHHHhC
Confidence 67888876543221 01123459999999999999999883 255555555555444322 223334
Q ss_pred eeeeCCC
Q 047717 155 LFELCPY 161 (303)
Q Consensus 155 l~~i~~~ 161 (303)
.++|+.+
T Consensus 172 d~vI~N~ 178 (200)
T PRK14734 172 DIVVDNN 178 (200)
T ss_pred CEEEECc
Confidence 5667643
No 121
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.79 E-value=1.4e-07 Score=85.73 Aligned_cols=97 Identities=24% Similarity=0.298 Sum_probs=60.6
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHh-cCCCCEEEE
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRS-VSKDNIIIV 79 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~-L~~~~~VIv 79 (303)
|.+|+|+|++||||||+++.|.+ .+. ..++... ...+. .+...+... ....-.|++
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~~-~g~-------~~~d~~~--------------~~L~~-~l~~~~~~~~~~~~~av~i 62 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALED-LGY-------YCVDNLP--------------PSLLP-KLVELLAQSGGIRKVAVVI 62 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH-cCC-------eEECCcC--------------HHHHH-HHHHHHHhcCCCCCeEEEE
Confidence 56899999999999999999853 222 2222110 01111 121122221 123357888
Q ss_pred cCCCC--chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717 80 DSLNS--IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE 121 (303)
Q Consensus 80 D~~n~--~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~ 121 (303)
|..+. .+.++..+..+ +..+..+.+||++++.+++.+|..+
T Consensus 63 D~r~~~~~~~~~~~~~~L-~~~g~~~~iI~L~a~~e~L~~Rl~~ 105 (288)
T PRK05416 63 DVRSRPFFDDLPEALDEL-RERGIDVRVLFLDASDEVLIRRYSE 105 (288)
T ss_pred ccCchhhHHHHHHHHHHH-HHcCCcEEEEEEECCHHHHHHHHhh
Confidence 98753 34455555544 4458888899999999999999875
No 122
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.79 E-value=3.4e-08 Score=87.63 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=25.1
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|.+|.|+|.+||||||+++.|.+.++..
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G~~ 28 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHHIE 28 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 8899999999999999999999876543
No 123
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.79 E-value=1e-07 Score=80.45 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=67.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccC--CCc-hhh---------------HHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSY--ASM-PAE---------------KNLRGVL 63 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y--~~~-~~e---------------~~~r~~l 63 (303)
.+|+|.|++||||||+++.|+..+...+........ ....+......| .+. .-. ....+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 80 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTR-KPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceee-CCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence 479999999999999999999876543211100000 000000000000 000 000 0011122
Q ss_pred HHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q 047717 64 RSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFE 143 (303)
Q Consensus 64 ~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E 143 (303)
...+...+..|.+||+|... .+. ..+.+..+.+..++++.++.+.+.+|+.+|+. .+++.+..-..++.
T Consensus 81 ~~~i~~~~~~g~~vi~d~~~--~~~----~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~-----~~~~~i~~rl~~~~ 149 (180)
T TIGR03263 81 KSPVEEALAAGKDVLLEIDV--QGA----RQVKKKFPDAVSIFILPPSLEELERRLRKRGT-----DSEEVIERRLAKAK 149 (180)
T ss_pred HHHHHHHHHCCCeEEEECCH--HHH----HHHHHhCCCcEEEEEECCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHH
Confidence 34566778889999999742 222 22223333334444456678899999998854 24544544444443
No 124
>PRK15453 phosphoribulokinase; Provisional
Probab=98.78 E-value=8.3e-08 Score=86.26 Aligned_cols=145 Identities=12% Similarity=0.224 Sum_probs=78.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC-Ccc-------------ccCCC---c-hhhHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL-DRN-------------QSYAS---M-PAEKNLRGVL 63 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~-~~~-------------~~y~~---~-~~e~~~r~~l 63 (303)
|+|+|+|.|||||||+|+.|++.|+... ..+.+++.+.++. .+. ..|+. . ..-..+.+.+
T Consensus 6 piI~ItG~SGsGKTTva~~l~~if~~~~--~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~l 83 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKRAFEKIFRREN--INAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQLF 83 (290)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhcC--CCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHHH
Confidence 7999999999999999999999887542 2344444444432 111 12322 1 1111111122
Q ss_pred HHHHH------------------H-----------hc-CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHH
Q 047717 64 RSEVD------------------R-----------SV-SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEED 113 (303)
Q Consensus 64 ~~~v~------------------~-----------~L-~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e 113 (303)
....+ . .+ ....+||++|....-. + ....++...+ ..||++++.+
T Consensus 84 ~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~-~-~~~~lr~~~D---lkIfVdp~~d 158 (290)
T PRK15453 84 REYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVV-T-DQVDVAQHVD---LLIGVVPIVN 158 (290)
T ss_pred HHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccc-c-ccHHHHHhCC---eeEeeCCcHh
Confidence 21100 0 12 2356899999753210 0 1122333333 4999999999
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCcee
Q 047717 114 HCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLF 156 (303)
Q Consensus 114 ~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~ 156 (303)
.++.|-..|.........+.+++.+..| . |+. ..+-.|.|
T Consensus 159 lr~irRI~RD~~ERGrs~EsVi~qilrr-m-Pdy-~~yI~PQ~ 198 (290)
T PRK15453 159 LEWIQKIHRDTSERGYSREAVMDTILRR-M-PDY-INYITPQF 198 (290)
T ss_pred HHHHHHHHhhhHhhCCCHHHHHHHHHHh-C-ChH-hhhCCCCc
Confidence 9887777776422112345667766666 3 553 33444544
No 125
>PLN02422 dephospho-CoA kinase
Probab=98.77 E-value=4.1e-08 Score=86.41 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.6
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|.+|.|+|.+||||||+++.|++ ++..
T Consensus 1 M~~igltG~igsGKstv~~~l~~-~g~~ 27 (232)
T PLN02422 1 MRVVGLTGGIASGKSTVSNLFKS-SGIP 27 (232)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CCCe
Confidence 88999999999999999999984 5543
No 126
>PLN02459 probable adenylate kinase
Probab=98.77 E-value=1.5e-08 Score=90.32 Aligned_cols=116 Identities=15% Similarity=0.066 Sum_probs=65.5
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc----cCCCccccCCC--c-hhhHHHHHHHHHHHHHhc-CCCC
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS----FHLDRNQSYAS--M-PAEKNLRGVLRSEVDRSV-SKDN 75 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~----~~~~~~~~y~~--~-~~e~~~r~~l~~~v~~~L-~~~~ 75 (303)
|+|.|+|||||||+|+.|++.++..++...-++..+.. ++.. -..|-. . .........+...+.+.. ....
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~-i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~~~ 110 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQ-LKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGES 110 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHH-HHHHHHcCCccCHHHHHHHHHHHHhcccccCCc
Confidence 67789999999999999999987643221111111000 0000 000000 0 011222223333333321 2347
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 76 IIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 76 ~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
.+|+||......+-..|.. .....++|++++|.+++.+|+..|..
T Consensus 111 g~iLDGFPRt~~Qa~~Le~----~~~id~Vi~L~v~d~~l~~Rl~gR~~ 155 (261)
T PLN02459 111 GFILDGFPRTVRQAEILEG----VTDIDLVVNLKLREEVLVEKCLGRRI 155 (261)
T ss_pred eEEEeCCCCCHHHHHHHHh----cCCCCEEEEEECCHHHHHHHhhcccc
Confidence 8999997766554433322 22356799999999999999998853
No 127
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.75 E-value=3.2e-08 Score=87.03 Aligned_cols=31 Identities=32% Similarity=0.304 Sum_probs=26.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKE 32 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~ 32 (303)
++|.|.|+|||||||+|+.|++.++..+++.
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~~ 35 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLDT 35 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 3899999999999999999999998665443
No 128
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.75 E-value=3.2e-08 Score=83.16 Aligned_cols=132 Identities=18% Similarity=0.189 Sum_probs=73.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccc--------------CCccEEEecCCccC--CCccccCCCchhhHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESE--------------AKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRS 65 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~--------------~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~ 65 (303)
.||+|+|++|+||||+.+.|.+..+... -+.+.++++.+.|. +..+.......--..+.+....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~~~ 84 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTSRE 84 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccCcHH
Confidence 4899999999999999999998873211 01111222211110 0000000000000122234445
Q ss_pred HHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC-HHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717 66 EVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE-EDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK 144 (303)
Q Consensus 66 ~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~-~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~ 144 (303)
.+...+..|..||+|-- ..|.+ ..|..-.+...||+.+| .+.+.+|+..|+.+ ..+.+-.+|.....+
T Consensus 85 ~ve~~~~~G~~vildId--~qGa~-----qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtd----s~e~I~~Rl~~a~~E 153 (191)
T COG0194 85 PVEQALAEGKDVILDID--VQGAL-----QVKKKMPNAVSIFILPPSLEELERRLKGRGTD----SEEVIARRLENAKKE 153 (191)
T ss_pred HHHHHHhcCCeEEEEEe--hHHHH-----HHHHhCCCeEEEEEcCCCHHHHHHHHHccCCC----CHHHHHHHHHHHHHH
Confidence 67788889999999973 33432 12333337888998876 56789999998752 233334445544443
No 129
>PRK12338 hypothetical protein; Provisional
Probab=98.75 E-value=5.4e-08 Score=89.18 Aligned_cols=120 Identities=16% Similarity=0.152 Sum_probs=69.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccC-CccEEE------ecCCccCCCccccCCCc-----------hhh-------
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEA-KETVRI------IDEASFHLDRNQSYASM-----------PAE------- 56 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~-~~~v~~------~~~~~~~~~~~~~y~~~-----------~~e------- 56 (303)
.+|+|+|.|||||||+|+.|+++++...+ ..+.+. ++.+-........|... ..+
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~gf~ 84 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAGFE 84 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHHHH
Confidence 48999999999999999999999975421 111000 01100000000111100 011
Q ss_pred ---HHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 57 ---KNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 57 ---~~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
..+...+...+.+++..|..||+||....+++..... .........+++..+.+..++|...|..
T Consensus 85 ~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~---~~~~~~v~~~vl~~dee~h~~Rf~~R~~ 152 (319)
T PRK12338 85 EHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQ---FEENASIHFFILSADEEVHKERFVKRAM 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhh---hcccCceEEEEEECCHHHHHHHHHHhhh
Confidence 1111233345666778899999999988888754211 0112234555566888899999999774
No 130
>PLN02842 nucleotide kinase
Probab=98.73 E-value=8.1e-08 Score=92.89 Aligned_cols=116 Identities=14% Similarity=0.125 Sum_probs=60.2
Q ss_pred EEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc----cccCCC--chhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717 5 VICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR----NQSYAS--MPAEKNLRGVLRSEVDRSVSKDNIII 78 (303)
Q Consensus 5 ~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~----~~~y~~--~~~e~~~r~~l~~~v~~~L~~~~~VI 78 (303)
+|.|+|||||||+|+.|+++++..++...-++..+..-+... ...... ......+...+...+.+.......+|
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I 80 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL 80 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence 489999999999999999999754322111111100000000 000000 00111222233323322111224477
Q ss_pred EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
+||...... +...+.+....+.++|++++|.+++.+|...|.
T Consensus 81 LDGfPRt~~---Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~ 122 (505)
T PLN02842 81 LDGYPRSFA---QAQSLEKLKIRPDIFILLDVPDEILIDRCVGRR 122 (505)
T ss_pred EeCCCCcHH---HHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccc
Confidence 799544433 333232333357789999999999999988874
No 131
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.71 E-value=4.6e-08 Score=83.31 Aligned_cols=116 Identities=14% Similarity=0.186 Sum_probs=64.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccC----------------CccEEEecCCccCC-CccccCCC-chhhHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEA----------------KETVRIIDEASFHL-DRNQSYAS-MPAEKNLRGVL 63 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~----------------~~~v~~~~~~~~~~-~~~~~y~~-~~~e~~~r~~l 63 (303)
.+|+|+|++||||+|+++.|.+.+...+. +.+...++.+.+.- ...+.|-. ......+.+..
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~ 82 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTS 82 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccC
Confidence 58999999999999999999988632110 01111111100000 00000000 00001122233
Q ss_pred HHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEe-cCHHHHHHHHHHhhh
Q 047717 64 RSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCD-LEEDHCRKWNKERHE 124 (303)
Q Consensus 64 ~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~-~~~e~~~~R~~~R~~ 124 (303)
.+.+...+..+..+|+|.. ..+.+. + +.......+||+. ++.+++.+|+.+|+.
T Consensus 83 ~~~i~~~~~~~~~~ild~~--~~~~~~-l----~~~~~~~~vIfi~~~s~~~l~~rl~~R~~ 137 (184)
T smart00072 83 KETIRQVAEQGKHCLLDID--PQGVKQ-L----RKAQLYPIVIFIAPPSSEELERRLRGRGT 137 (184)
T ss_pred HHHHHHHHHcCCeEEEEEC--HHHHHH-H----HHhCCCcEEEEEeCcCHHHHHHHHHhcCC
Confidence 3456677778999999984 344321 2 3334455799997 556779999998864
No 132
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.71 E-value=4.6e-08 Score=79.04 Aligned_cols=101 Identities=20% Similarity=0.120 Sum_probs=60.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC----ccCCCccccCCCc-hhhHHHHHHHHHHHHHhcCCCCE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA----SFHLDRNQSYASM-PAEKNLRGVLRSEVDRSVSKDNI 76 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~----~~~~~~~~~y~~~-~~e~~~r~~l~~~v~~~L~~~~~ 76 (303)
|-|+|+|.||+||||+|.+|++.++.. .+.+++. .+.-.=.+.|... -+|..+...+.. .|.+ ..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~-----~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~----~m~~-Gg 77 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLE-----YIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEP----LMIE-GG 77 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCc-----eEehhhHHhhhcchhcccccccCccccHHHHHHHHHH----HHhc-CC
Confidence 679999999999999999999998764 3444432 1110000112111 234444434443 3333 44
Q ss_pred EEEcC--CCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 77 IIVDS--LNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 77 VIvD~--~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
.|||- .-..++ .| -..|+.+.||-+++..|+.+|+-
T Consensus 78 ~IVDyHgCd~Fpe---rw---------fdlVvVLr~~~s~LY~RL~sRgY 115 (176)
T KOG3347|consen 78 NIVDYHGCDFFPE---RW---------FDLVVVLRTPNSVLYDRLKSRGY 115 (176)
T ss_pred cEEeecccCccch---hh---------eeEEEEEecCchHHHHHHHHcCC
Confidence 66663 222222 11 23488899999999999999974
No 133
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.70 E-value=1.7e-07 Score=81.23 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=23.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+|.|+|++||||||+++.|+..+..
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 7899999999999999999998864
No 134
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.70 E-value=4.1e-07 Score=75.10 Aligned_cols=126 Identities=16% Similarity=0.186 Sum_probs=80.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc-cccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc--CCCCEEEE
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK-ESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV--SKDNIIIV 79 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~-~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L--~~~~~VIv 79 (303)
+|+=.+.+||||||+|..|.+.|+ +. ++-+|+ +. .. ... .+...+.+.| ....+||+
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~wg------HvQnDn-I~-------~k-~~~-----~f~~~~l~~L~~~~~~vVia 60 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGEWG------HVQNDN-IT-------GK-RKP-----KFIKAVLELLAKDTHPVVIA 60 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCCCC------ccccCC-CC-------CC-CHH-----HHHHHHHHHHhhCCCCEEEE
Confidence 355678999999999999999998 42 121221 11 00 111 2222344556 67789999
Q ss_pred cCCCCchHHHHHHHHHHHHcCC-------cE---EEEEEec-CH----HHHHHHHHHhhhc-C---CCCCC----HHHHH
Q 047717 80 DSLNSIKGYRYELWCLARAAGI-------RY---CVLYCDL-EE----DHCRKWNKERHEK-G---EAAYD----DKIFE 136 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~-------~~---~vI~l~~-~~----e~~~~R~~~R~~~-~---~~~~~----~e~~~ 136 (303)
|-.|..+..|.+++...+.... .. ++-|+.- +. ++|.+|..+|+.. . ..... ..++.
T Consensus 61 DRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~ 140 (168)
T PF08303_consen 61 DRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIME 140 (168)
T ss_pred eCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHH
Confidence 9999999999999987766543 22 2333322 22 4688999999842 0 01111 36788
Q ss_pred HHHHHhcCCCCC
Q 047717 137 DLVRRFEKPDRR 148 (303)
Q Consensus 137 ~l~~r~E~P~~~ 148 (303)
..+.|||+.++.
T Consensus 141 gFi~rfep~~~~ 152 (168)
T PF08303_consen 141 GFIKRFEPVDPD 152 (168)
T ss_pred HHHHhcCCCCCC
Confidence 899999987753
No 135
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.69 E-value=7.6e-08 Score=93.78 Aligned_cols=111 Identities=15% Similarity=0.086 Sum_probs=60.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL 82 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~ 82 (303)
-|+|+|+|||||||+++.|++.++...++.+..+.. ..+....+.|. ...+..+|..-...+++.+.....||-.|.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~--~~g~~i~~i~~-~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Gg 78 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIER--REGRSVRRIFE-EDGEEYFRLKEKELLRELVERDNVVVATGG 78 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHH--HcCCCHHHHHH-HhhhHHHHHHHHHHHHHHhhcCCEEEECCC
Confidence 489999999999999999999987643222211111 11111111222 122344443222233333333344444442
Q ss_pred CC--chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 83 NS--IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 83 n~--~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
.. ....|..+ +. ..+|||++|.+++.+|+..|++
T Consensus 79 gvv~~~~~r~~l----~~----~~vI~L~as~e~l~~Rl~~~~R 114 (488)
T PRK13951 79 GVVIDPENRELL----KK----EKTLFLYAPPEVLMERVTTENR 114 (488)
T ss_pred ccccChHHHHHH----hc----CeEEEEECCHHHHHHHhccCCC
Confidence 21 12233322 22 2489999999999999976543
No 136
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.69 E-value=4.1e-08 Score=84.31 Aligned_cols=27 Identities=37% Similarity=0.480 Sum_probs=25.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESE 29 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~ 29 (303)
+|.|+|+|||||||+|+.|+..|+..+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccC
Confidence 689999999999999999999998754
No 137
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.68 E-value=7.3e-07 Score=76.91 Aligned_cols=128 Identities=14% Similarity=0.176 Sum_probs=67.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCc---------------cEEEecCCccCC-CccccCCC--chhhHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKE---------------TVRIIDEASFHL-DRNQSYAS--MPAEKNLRGVLR 64 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~---------------~v~~~~~~~~~~-~~~~~y~~--~~~e~~~r~~l~ 64 (303)
+|+|+|++||||||+++.|+..+...+... +...++...+.- ...+.|.. .... ...+...
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~ 85 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFG-NYYGTPR 85 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECC-ccccCcH
Confidence 899999999999999999999875211100 001111000000 00000000 0000 0111223
Q ss_pred HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEE-ecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q 047717 65 SEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC-DLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFE 143 (303)
Q Consensus 65 ~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l-~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E 143 (303)
..+...+..|..||+|... .+. ..+.+..+ ...+|++ .++.+++.+|..+|+. .+++.++....++.
T Consensus 86 ~~i~~~l~~g~~vi~dl~~--~g~----~~l~~~~~-~~~~I~i~~~s~~~l~~Rl~~R~~-----~~~~~i~~rl~~~~ 153 (205)
T PRK00300 86 SPVEEALAAGKDVLLEIDW--QGA----RQVKKKMP-DAVSIFILPPSLEELERRLRGRGT-----DSEEVIARRLAKAR 153 (205)
T ss_pred HHHHHHHHcCCeEEEeCCH--HHH----HHHHHhCC-CcEEEEEECcCHHHHHHHHHhcCC-----CCHHHHHHHHHHHH
Confidence 4566777889999999742 222 22333343 3344554 5678889999998864 35555555444443
No 138
>PLN02199 shikimate kinase
Probab=98.67 E-value=1.2e-07 Score=85.69 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=64.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL 82 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~ 82 (303)
-|+|+|++||||||+++.|++.++...++.+.++.... .+..-..+|. ...+..+|..-...+.+.......||--|.
T Consensus 104 ~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~-~G~sI~eIf~-~~GE~~FR~~E~e~L~~L~~~~~~VIStGG 181 (303)
T PLN02199 104 SMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAM-NGTSVAEIFV-HHGENFFRGKETDALKKLSSRYQVVVSTGG 181 (303)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHh-cCCCHHHHHH-HhCHHHHHHHHHHHHHHHHhcCCEEEECCC
Confidence 58999999999999999999999765333222111100 0111111222 123456664444455555444556665543
Q ss_pred CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717 83 NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE 121 (303)
Q Consensus 83 n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~ 121 (303)
.. -.+.+.+.+.+ .| .+||+++|.++..+|+..
T Consensus 182 G~--V~~~~n~~~L~-~G---~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 182 GA--VIRPINWKYMH-KG---ISIWLDVPLEALAHRIAA 214 (303)
T ss_pred cc--cCCHHHHHHHh-CC---eEEEEECCHHHHHHHHhh
Confidence 21 12333333333 34 499999999999999985
No 139
>PHA03132 thymidine kinase; Provisional
Probab=98.66 E-value=6.1e-07 Score=88.12 Aligned_cols=139 Identities=15% Similarity=0.134 Sum_probs=80.2
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC------ccccCCC---------chhhHHHHH-HH-
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD------RNQSYAS---------MPAEKNLRG-VL- 63 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~------~~~~y~~---------~~~e~~~r~-~l- 63 (303)
+.+|+|.|..||||||+++.|+++++ ..++.+.+..-.+. ....|.. +.....+.. .+
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~lg-----~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~F 331 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGILG-----DNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKF 331 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhC-----CceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHH
Confidence 36899999999999999999999982 34555554431110 0001100 000111100 00
Q ss_pred -------HHH----------HHHhcCCCCEEEEcCCCCch-----------HH--HHHHHHHHHH--cCCcEEEEEEecC
Q 047717 64 -------RSE----------VDRSVSKDNIIIVDSLNSIK-----------GY--RYELWCLARA--AGIRYCVLYCDLE 111 (303)
Q Consensus 64 -------~~~----------v~~~L~~~~~VIvD~~n~~k-----------~~--R~~l~~~ak~--~~~~~~vI~l~~~ 111 (303)
... +...+..+.+||+|-..+.. +. ..++..+... ...+..+||++++
T Consensus 332 A~Pfl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~ 411 (580)
T PHA03132 332 ATPFRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLN 411 (580)
T ss_pred hhHHHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCC
Confidence 001 11134678899999654221 10 0122222221 1347899999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717 112 EDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK 144 (303)
Q Consensus 112 ~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~ 144 (303)
++++.+|+.+|++..+...+.+.+.++.+.|..
T Consensus 412 pe~alkRIkkRgR~~E~~IdleYL~rLre~Y~~ 444 (580)
T PHA03132 412 SEENLRRVKKRGRKEEKGINLTYLKELNWAYHA 444 (580)
T ss_pred HHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHH
Confidence 999999999998644333467888888877664
No 140
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.66 E-value=2.1e-07 Score=76.14 Aligned_cols=134 Identities=19% Similarity=0.159 Sum_probs=88.5
Q ss_pred CE-EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717 1 MA-LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV 79 (303)
Q Consensus 1 M~-LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv 79 (303)
|| +.++.|+.||||||+...+...+.. .+++++.+.+.......-..+..-+..| .....+..+.+.+..+++
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~~~-----~~~~VN~D~iA~~i~p~~p~~~~i~A~r-~ai~~i~~~I~~~~~F~~ 74 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPLLP-----GIVFVNADEIAAQISPDNPTSAAIQAAR-VAIDRIARLIDLGRPFIA 74 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhhcC-----CeEEECHHHHhhhcCCCCchHHHHHHHH-HHHHHHHHHHHcCCCcce
Confidence 54 7789999999999998765554432 3455554433211111111112222333 223345566778899999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEec-CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDL-EEDHCRKWNKERHEKGEAAYDDKIFEDLVRR 141 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~-~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r 141 (303)
+.+..-++++.- ...||+.|+-....|+-. +.|.+.+|...|-..|++..+++.+++-+.|
T Consensus 75 ETtLS~~s~~~~-ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~r 136 (187)
T COG4185 75 ETTLSGPSILEL-IKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRR 136 (187)
T ss_pred EEeeccchHHHH-HHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 999888887754 457789998777777655 5678999999999988899999877654443
No 141
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.65 E-value=1.9e-07 Score=84.98 Aligned_cols=119 Identities=22% Similarity=0.306 Sum_probs=64.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc----------ccCCCchhhHHHHHHHHHHHH----
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN----------QSYASMPAEKNLRGVLRSEVD---- 68 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~----------~~y~~~~~e~~~r~~l~~~v~---- 68 (303)
+|.|+|++||||||+|+.|...+.....+..+.+++.+++..... ..+.++.+-..+...+.....
T Consensus 64 IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk~g~~~ 143 (290)
T TIGR00554 64 IISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLKSGKPN 143 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHHCCCCc
Confidence 788999999999999999988876321122455555444332110 011111111112212211100
Q ss_pred ------------------HhcCCCCEEEEcCCCCchHHH----HHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 69 ------------------RSVSKDNIIIVDSLNSIKGYR----YELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 69 ------------------~~L~~~~~VIvD~~n~~k~~R----~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
.......+||++|.+....-+ ..-+...+ +.-...||+++|.+.+.+|..+|.
T Consensus 144 v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~--d~~D~~IyvDa~~d~~~~w~i~R~ 218 (290)
T TIGR00554 144 VTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVS--DFVDFSIYVDAEEDLLQTWYINRF 218 (290)
T ss_pred eecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHH--HhCCEEEEEECCHHHHHHHHHHHH
Confidence 012346799999987542111 00011111 223459999999999999988874
No 142
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.63 E-value=1e-07 Score=82.11 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=29.7
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
.+.+||+|....+..--+ +. -..+|+++||.+++.+|+.+|.
T Consensus 102 ~~~~vi~e~pLL~E~~~~------~~---~D~vi~V~a~~e~r~~RL~~R~ 143 (196)
T PRK14732 102 EGKLVIWEVPLLFETDAY------TL---CDATVTVDSDPEESILRTISRD 143 (196)
T ss_pred cCCcEEEEeeeeeEcCch------hh---CCEEEEEECCHHHHHHHHHHcC
Confidence 456888898765432111 11 2459999999999999999994
No 143
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.63 E-value=2.7e-07 Score=94.96 Aligned_cols=105 Identities=11% Similarity=0.067 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCc-----EEEEEEecCHHH-HHHHHHHhhhcCCCCCC
Q 047717 58 NLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIR-----YCVLYCDLEEDH-CRKWNKERHEKGEAAYD 131 (303)
Q Consensus 58 ~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~-----~~vI~l~~~~e~-~~~R~~~R~~~~~~~~~ 131 (303)
.+|..+.. .+|.+.....+|+|| ++.|+. .+.||+++++++ +.+|..+... ...-
T Consensus 174 ~VR~~l~~-~qr~~~~~~~~V~eG---------------RDigTvVfPdA~~KifL~As~e~RA~RR~~e~~~---~~~~ 234 (863)
T PRK12269 174 AIRAIMTG-KIRSAVCGARVVCEG---------------RDLTTVVFVDADLKCYLDASIEARVARRWAQGTS---RLSK 234 (863)
T ss_pred HHHHHHHH-HHHHHHhcCCEEEEC---------------CCCccEECCCCCEEEEEECCHHHHHHHHHHhhhc---cCCH
Confidence 44544443 334444555799999 444542 358999999988 5666655432 1224
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHHhccC
Q 047717 132 DKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKKVD 184 (303)
Q Consensus 132 ~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~~~~ 184 (303)
++++.++.+|... +.+|--+||-....+ ..++++...++++++.|++.+.
T Consensus 235 ~~i~~~i~~RD~~--D~~R~~~pL~~a~dA-i~iDts~l~ieevv~~i~~~~~ 284 (863)
T PRK12269 235 QELEQRMRARDAH--DRARTVGGLRCAPDA-LYVDTSCLTIEEVCERIAREAH 284 (863)
T ss_pred HHHHHHHHHhhhh--hccCccCCCccCCCe-EEEECCCCCHHHHHHHHHHHHH
Confidence 5788889888775 567777888766443 4455666778888887775443
No 144
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.61 E-value=7e-07 Score=76.75 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
+|.|+|++||||||+++.|+..+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999883
No 145
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.60 E-value=1.4e-07 Score=79.92 Aligned_cols=24 Identities=42% Similarity=0.426 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+|.|+|.|||||||+++.|++ ++.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~ 24 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGI 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCC
Confidence 589999999999999999988 554
No 146
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.59 E-value=1.4e-06 Score=76.85 Aligned_cols=117 Identities=20% Similarity=0.208 Sum_probs=63.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccE-EEecCCcc--------CC-CccccCCCchhhHHHHHHHHHHH-----
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETV-RIIDEASF--------HL-DRNQSYASMPAEKNLRGVLRSEV----- 67 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v-~~~~~~~~--------~~-~~~~~y~~~~~e~~~r~~l~~~v----- 67 (303)
+|.|+|++||||||+++.|+..+........+ +.+|+... +. .....+ +...-..+...+....
T Consensus 35 iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~-~~~d~~~~~~~l~~l~~~~~~ 113 (229)
T PRK09270 35 IVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAP-ETFDVAGLAALLRRLRAGDDE 113 (229)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCC-CCCCHHHHHHHHHHHHcCCCc
Confidence 78999999999999999999998764322223 33443211 00 000111 1111111221221110
Q ss_pred ----------HHh------c-CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 68 ----------DRS------V-SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 68 ----------~~~------L-~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
... + ....+||+||....... ..+..+.. .-.++||++||.+++++|...|..
T Consensus 114 i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~-~~~~~l~~---~~D~vi~v~~~~~~~~~R~~~R~~ 183 (229)
T PRK09270 114 VYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDE-EPWRRLAG---LFDFTIFLDAPAEVLRERLVARKL 183 (229)
T ss_pred eecccCCcccCCCCCCceEecCCCCEEEEcCcceeecc-ccHHHHHh---hCCEEEEEECCHHHHHHHHHHHHH
Confidence 000 0 13568999997653211 01111111 123699999999999999999964
No 147
>PRK06761 hypothetical protein; Provisional
Probab=98.59 E-value=4e-07 Score=82.36 Aligned_cols=120 Identities=17% Similarity=0.200 Sum_probs=69.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHH---HHHHHHHHHhcCCCCE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLR---GVLRSEVDRSVSKDNI 76 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r---~~l~~~v~~~L~~~~~ 76 (303)
++|+|+|+|||||||+++.|++.+...+++..+..-.+... .......+........++ ..-.....+.+..|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~~ 83 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGDY 83 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCCe
Confidence 48999999999999999999999976533322222111111 111111222211112221 1111234445567777
Q ss_pred EEEcCCCCchHHHHHHHH-HHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 77 IIVDSLNSIKGYRYELWC-LARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 77 VIvD~~n~~k~~R~~l~~-~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
+|+-..-....||..+.. .. ....+..+| .+|.+...+|...|..
T Consensus 84 ~i~~~~~l~~~yr~~~~~~~~--~~~~v~~~h-~~p~e~i~~R~~~rw~ 129 (282)
T PRK06761 84 YLLPYRKIKNEFGDQFSDELF--NDISKNDIY-ELPFDKNTELITDRWN 129 (282)
T ss_pred EEEEehhhhHHHhhhhhhhhc--ccceeeeee-cCCHHHHHHHHHHHHH
Confidence 777776666777777663 11 112344577 9999999999988754
No 148
>PLN02348 phosphoribulokinase
Probab=98.58 E-value=5e-07 Score=84.80 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=24.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.+|.|+|.+||||||+|+.|++.|+.
T Consensus 50 ~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 50 VVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 37899999999999999999999975
No 149
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.58 E-value=2.1e-07 Score=66.27 Aligned_cols=23 Identities=52% Similarity=0.628 Sum_probs=21.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
+|+++|.|||||||+++.|++.|
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999998
No 150
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.58 E-value=2e-07 Score=80.64 Aligned_cols=26 Identities=42% Similarity=0.390 Sum_probs=23.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.|.|+|.+||||||+++.|++.++..
T Consensus 8 ~IglTG~iGsGKStv~~~l~~~lg~~ 33 (204)
T PRK14733 8 PIGITGGIASGKSTATRILKEKLNLN 33 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 69999999999999999999887653
No 151
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.51 E-value=3.3e-07 Score=78.24 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
+|.|+|.|||||||+++.|++..+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~ 26 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFP 26 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCe
Confidence 48999999999999999999876443
No 152
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.51 E-value=4.9e-07 Score=78.58 Aligned_cols=41 Identities=5% Similarity=-0.033 Sum_probs=29.2
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 75 NIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 75 ~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
.+||+|+........ ...-..+|++.||.+++.+|+.+|+.
T Consensus 116 ~vvv~e~pLL~e~~~---------~~~~d~ii~V~a~~e~~~~Rl~~R~~ 156 (208)
T PRK14731 116 RILVKEAAILFESGG---------DAGLDFIVVVAADTELRLERAVQRGM 156 (208)
T ss_pred CEEEEEeeeeeecCc---------hhcCCeEEEEECCHHHHHHHHHHcCC
Confidence 688889876543211 01124589999999999999999954
No 153
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.51 E-value=2.7e-07 Score=79.55 Aligned_cols=26 Identities=46% Similarity=0.459 Sum_probs=23.5
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|.+|.|+|.|||||||+|+.+++ ++.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~ 27 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGF 27 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCC
Confidence 67999999999999999999988 654
No 154
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.50 E-value=1.8e-06 Score=77.18 Aligned_cols=144 Identities=14% Similarity=0.230 Sum_probs=76.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC-Ccc-------------ccCCC---c-hhhHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL-DRN-------------QSYAS---M-PAEKNLRGVLR 64 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~-~~~-------------~~y~~---~-~~e~~~r~~l~ 64 (303)
+|.|+|.+||||||+++.|.+.|+..+ ..+.+++.+.++. .+. ..|+. . ..-..+.+.+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999999999997643 2344444333332 110 12222 1 11111111121
Q ss_pred HHHH------------------------------HhcCCCCEEEEcCCCCc-hHHHHHHHHHHHHcCCcEEEEEEecCHH
Q 047717 65 SEVD------------------------------RSVSKDNIIIVDSLNSI-KGYRYELWCLARAAGIRYCVLYCDLEED 113 (303)
Q Consensus 65 ~~v~------------------------------~~L~~~~~VIvD~~n~~-k~~R~~l~~~ak~~~~~~~vI~l~~~~e 113 (303)
..-+ .......++|++|.... ..+..+ +++..+ ..||++++.+
T Consensus 79 ~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLhg~~~~~~~~---lr~~~D---lkIfVd~~~d 152 (277)
T cd02029 79 TYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVVTEGYN---VAQHAD---LLVGVVPIIN 152 (277)
T ss_pred HHHcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCCcccccccHH---HHHhCC---eEEEecCcHH
Confidence 1100 01234578899997521 111112 333333 4999999999
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceee
Q 047717 114 HCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFE 157 (303)
Q Consensus 114 ~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~ 157 (303)
.++.|-..|.........+.+++.+..|. |+. .++-.|.|.
T Consensus 153 lr~irRI~RD~~ERGrs~EsVi~qilrrm--pdy-~~yI~PQ~~ 193 (277)
T cd02029 153 LEWIQKIHRDTAERGYSAEAVMDTILRRM--PDY-INYICPQFS 193 (277)
T ss_pred HHHHHHHHhhhHhhCCCHHHHHHHHHHhC--chH-HhhCCcccc
Confidence 98877777764221123455666666554 443 345556554
No 155
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.45 E-value=9.9e-08 Score=79.26 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHH
Q 047717 10 PSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYR 89 (303)
Q Consensus 10 PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R 89 (303)
|||||||+++.||+.|+...++.+..+.. ..+..-.++|. ...+..+|..-...+...+.....||.-|.... ..
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~--~~g~si~~i~~-~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~--~~ 75 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEE--RTGMSISEIFA-EEGEEAFRELESEALRELLKENNCVIACGGGIV--LK 75 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHH--HHTSHHHHHHH-HHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGG--GS
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHH--HhCCcHHHHHH-cCChHHHHHHHHHHHHHHhccCcEEEeCCCCCc--Cc
Confidence 79999999999999998753222211100 11111112222 123455665555556666666566665543211 11
Q ss_pred HHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 90 YELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 90 ~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
.+.+.+.+..+. +||++++.+.+.+|+..+..
T Consensus 76 ~~~~~~L~~~g~---vI~L~~~~~~l~~Rl~~~~~ 107 (158)
T PF01202_consen 76 EENRELLKENGL---VIYLDADPEELAERLRARDN 107 (158)
T ss_dssp HHHHHHHHHHSE---EEEEE--HHHHHHHHHHHCT
T ss_pred HHHHHHHHhCCE---EEEEeCCHHHHHHHHhCCCC
Confidence 222333344444 99999999999999987754
No 156
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.44 E-value=6.7e-07 Score=75.92 Aligned_cols=119 Identities=21% Similarity=0.220 Sum_probs=63.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC-----------------ccC---------CCc----cccCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA-----------------SFH---------LDR----NQSYA 51 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~-----------------~~~---------~~~----~~~y~ 51 (303)
++|.|+|..||||||+++.|++ ++.. ++-.|+. .|+ +++ .-.|.
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~-----vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~ 74 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFP-----VIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFS 74 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-E-----EEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTT
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCC-----EECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhc
Confidence 4799999999999999999988 6543 3322210 000 000 01222
Q ss_pred CchhhHHHHHHHHHHHH----Hhc---CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 52 SMPAEKNLRGVLRSEVD----RSV---SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 52 ~~~~e~~~r~~l~~~v~----~~L---~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
+...-+.+.+.+...+. +.+ .....+|+|.+.++..-- ...-..+|++.||.++..+|..+|..
T Consensus 75 d~~~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~~---------~~~~D~vi~V~a~~e~ri~Rl~~R~~ 145 (180)
T PF01121_consen 75 DPEKLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESGL---------EKLCDEVIVVYAPEEIRIKRLMERDG 145 (180)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTTG---------GGGSSEEEEEE--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhhH---------hhhhceEEEEECCHHHHHHHHHhhCC
Confidence 22222222222222222 211 233789999987654310 11124599999999999999999853
Q ss_pred cCCCCCCHHHHHHHHH
Q 047717 125 KGEAAYDDKIFEDLVR 140 (303)
Q Consensus 125 ~~~~~~~~e~~~~l~~ 140 (303)
++.+.+.....
T Consensus 146 -----~~~~~~~~ri~ 156 (180)
T PF01121_consen 146 -----LSEEEAEARIA 156 (180)
T ss_dssp -----STHHHHHHHHH
T ss_pred -----CcHHHHHHHHH
Confidence 45655544443
No 157
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.42 E-value=9.4e-07 Score=78.60 Aligned_cols=117 Identities=23% Similarity=0.289 Sum_probs=72.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc----------cccCCCchhhHHHHHHHHHHHH----
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR----------NQSYASMPAEKNLRGVLRSEVD---- 68 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~----------~~~y~~~~~e~~~r~~l~~~v~---- 68 (303)
+|.++|.||+||||.|+.|+..+....-...+-++-.++|+... ..++.++.+-..+...+. .++
T Consensus 84 IIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~-~vK~~~~ 162 (283)
T COG1072 84 IIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLS-DVKAGKP 162 (283)
T ss_pred EEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHH-HHhcCCC
Confidence 79999999999999999999998765333346666666665421 112222222222221221 111
Q ss_pred -------------------HhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 69 -------------------RSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 69 -------------------~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
......+++|++|.|.......++ .+ .+.-...||++++.+.+.+|..+|--
T Consensus 163 ~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~-~~---sdffDfSIyvDa~~~~le~wyi~Rfl 233 (283)
T COG1072 163 DVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWL-FL---SDFFDFSIYVDADEELLEERYIERFL 233 (283)
T ss_pred ccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccc-cc---cccceEEEEecCCHHHHHHHHHHHHH
Confidence 012345799999988554322111 11 23345699999999999999999864
No 158
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.41 E-value=1.6e-06 Score=71.50 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=23.2
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l 25 (303)
|..++++|.||+||||+.+...+.+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5689999999999999999998887
No 159
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.39 E-value=2.1e-05 Score=64.70 Aligned_cols=141 Identities=15% Similarity=0.161 Sum_probs=82.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEE----ec-CCccCCCccc--------------cCCCchhhHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRI----ID-EASFHLDRNQ--------------SYASMPAEKNLRGV 62 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~----~~-~~~~~~~~~~--------------~y~~~~~e~~~r~~ 62 (303)
.+|++.|++|+||-|+-......+... ...++ +. ..+.+-+.+. .|.-+...-.++--
T Consensus 6 ~lI~vvGPSGAGKDtl~~~ar~~l~~~---~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Yg 82 (192)
T COG3709 6 RLIAVVGPSGAGKDTLLDAARARLAGR---PRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYG 82 (192)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhccC---CceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCcccc
Confidence 589999999999999999988888653 11211 11 1111111111 11100000001112
Q ss_pred HHHHHHHhcCCCCEEEEcCCC-CchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 047717 63 LRSEVDRSVSKDNIIIVDSLN-SIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRR 141 (303)
Q Consensus 63 l~~~v~~~L~~~~~VIvD~~n-~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r 141 (303)
+-..+..+|..|.+||+.+.- +.+..| +.+. ...+|.+.++++++.+|+.+|+++ ..+++..+|...
T Consensus 83 ip~eId~wl~~G~vvl~NgSRa~Lp~ar-------rry~-~Llvv~ita~p~VLaqRL~~RGRE----s~eeI~aRL~R~ 150 (192)
T COG3709 83 IPAEIDLWLAAGDVVLVNGSRAVLPQAR-------RRYP-QLLVVCITASPEVLAQRLAERGRE----SREEILARLARA 150 (192)
T ss_pred CchhHHHHHhCCCEEEEeccHhhhHHHH-------Hhhh-cceeEEEecCHHHHHHHHHHhccC----CHHHHHHHHHhh
Confidence 234577888999999999853 222222 2233 556888999999999999999873 256666666543
Q ss_pred hcCCCCCCCCCCceeeeCCC
Q 047717 142 FEKPDRRNRWDSPLFELCPY 161 (303)
Q Consensus 142 ~E~P~~~~rwd~pl~~i~~~ 161 (303)
-.- .. -+.++++|+.+
T Consensus 151 a~~---~~-~~~dv~~idNs 166 (192)
T COG3709 151 ARY---TA-GPGDVTTIDNS 166 (192)
T ss_pred ccc---cc-CCCCeEEEcCC
Confidence 221 11 15578888754
No 160
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.36 E-value=3e-07 Score=74.62 Aligned_cols=102 Identities=16% Similarity=0.224 Sum_probs=55.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccc---CC-------------ccEEEecCCccC--CCccccCCCchhhHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESE---AK-------------ETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLR 64 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~---~~-------------~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~ 64 (303)
+|+|+|++||||||+++.|++.+.... .. .+...++...+. +..............+.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence 588999999999999999998865321 00 011111110000 000000000000011122344
Q ss_pred HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC
Q 047717 65 SEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE 111 (303)
Q Consensus 65 ~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~ 111 (303)
+.+.+.+.+|.++|+|... .+ + ...++......+||+.+|
T Consensus 81 ~~i~~~~~~g~~~il~~~~--~~----~-~~l~~~~~~~~~I~i~~~ 120 (137)
T cd00071 81 AAVEEALAEGKIVILEIDV--QG----A-RQVKKSYPDAVSIFILPP 120 (137)
T ss_pred HHHHHHHhCCCeEEEEecH--HH----H-HHHHHcCCCeEEEEEECC
Confidence 5677788899999999832 12 1 223456677889999998
No 161
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.34 E-value=4.8e-06 Score=75.82 Aligned_cols=118 Identities=17% Similarity=0.218 Sum_probs=68.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccc-CCccEEE------ecCCccCCCccccCCC--------chhh----------H
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESE-AKETVRI------IDEASFHLDRNQSYAS--------MPAE----------K 57 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~-~~~~v~~------~~~~~~~~~~~~~y~~--------~~~e----------~ 57 (303)
+|+|+|++||||||+|..|+++|+... ++.+.+. ++.+.+.......|.. ...+ .
T Consensus 94 iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~~~~~ 173 (301)
T PRK04220 94 IILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFERHVE 173 (301)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHHHHHH
Confidence 799999999999999999999996531 1111100 1111000000012210 0111 1
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC-HHHHHHHHHHhhh
Q 047717 58 NLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE-EDHCRKWNKERHE 124 (303)
Q Consensus 58 ~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~-~e~~~~R~~~R~~ 124 (303)
.+...+...+.+++..|..+|++|....++|-.... .. ....+.++|.++ .+..++|...|.+
T Consensus 174 ~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~---~~-~~~~i~~~l~i~~ee~h~~RF~~R~~ 237 (301)
T PRK04220 174 PVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKY---LE-NPNVFMFVLTLSDEEAHKARFYARAR 237 (301)
T ss_pred HHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhh---hc-CCCEEEEEEEECCHHHHHHHHHHHHh
Confidence 111224455677888999999999999988754322 11 233455566654 5678899988875
No 162
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.30 E-value=2.6e-06 Score=72.35 Aligned_cols=115 Identities=20% Similarity=0.237 Sum_probs=63.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC-CccCCCccccCCCchhhH------------------HHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE-ASFHLDRNQSYASMPAEK------------------NLRGV 62 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~-~~~~~~~~~~y~~~~~e~------------------~~r~~ 62 (303)
.+|+|+|++||||||+++.|.+.+.... ...+..... ...+-..+..|..-..+. .+.+.
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~-~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt 81 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKF-GRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT 81 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTE-EEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhccccc-ccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence 4789999999999999999999876421 111111110 000000000110000000 00011
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC-HHHHHHHHHHhhh
Q 047717 63 LRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE-EDHCRKWNKERHE 124 (303)
Q Consensus 63 l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~-~e~~~~R~~~R~~ 124 (303)
..+.+.+.+..|..+|+|.. ..+. ...+..+....+||+.++ .+.+.+|+.+|+.
T Consensus 82 ~~~~i~~~~~~gk~~il~~~--~~g~-----~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~ 137 (183)
T PF00625_consen 82 SKSAIDKVLEEGKHCILDVD--PEGV-----KQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGD 137 (183)
T ss_dssp EHHHHHHHHHTTTEEEEEET--HHHH-----HHHHHCTTTEEEEEEEESSHHHHHHHHHTTTH
T ss_pred ccchhhHhhhcCCcEEEEcc--HHHH-----HHHHhcccCceEEEEEccchHHHHHHHhcccc
Confidence 22456677788999999874 3332 122445777889999765 6778888877754
No 163
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.29 E-value=9.4e-06 Score=66.74 Aligned_cols=99 Identities=21% Similarity=0.319 Sum_probs=57.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC---C----ccCC-----Cc-----cccCCCch------hhHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE---A----SFHL-----DR-----NQSYASMP------AEKN 58 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~---~----~~~~-----~~-----~~~y~~~~------~e~~ 58 (303)
.-|+++|.|||||||++..|++.|...++...=++..+ . +|.+ .+ ...+.... ..+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence 45999999999999999999999987632111011110 0 0000 00 00111000 1122
Q ss_pred HHHHHHHHHHHhcCCCCEEEEcCC----CCchHHHHHHHHHHHHcC
Q 047717 59 LRGVLRSEVDRSVSKDNIIIVDSL----NSIKGYRYELWCLARAAG 100 (303)
Q Consensus 59 ~r~~l~~~v~~~L~~~~~VIvD~~----n~~k~~R~~l~~~ak~~~ 100 (303)
+......++++++..-+++|+|-. +-.+.|+..+..+.+...
T Consensus 86 le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~k 131 (179)
T COG1618 86 LEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGK 131 (179)
T ss_pred HHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCC
Confidence 222444567777777799999964 346788888887765443
No 164
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.29 E-value=1.4e-05 Score=78.49 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=26.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
.+|.|+|++||||||+|+.|+..+.. ..++.+|+
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp~----vgvIsmDd 99 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMPS----IAVISMDN 99 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCCC----cEEEEEcc
Confidence 48999999999999999999988642 23455554
No 165
>PRK07429 phosphoribulokinase; Provisional
Probab=98.28 E-value=1.1e-05 Score=74.93 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=27.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
.+|.|+|.+||||||+++.|+..++.. ...++..|+
T Consensus 9 ~IIgI~G~SGSGKSTla~~L~~ll~~~--~~~vi~~Dd 44 (327)
T PRK07429 9 VLLGVAGDSGCGKTTFLRGLADLLGEE--LVTVICTDD 44 (327)
T ss_pred EEEEEECCCCCCHHHHHHHHHhHhccC--ceEEEEecc
Confidence 389999999999999999999998743 223444443
No 166
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.28 E-value=7.3e-06 Score=74.19 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+|.|+|.+||||||+++.|+..+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~ 25 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGS 25 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5889999999999999999998864
No 167
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.20 E-value=4.7e-06 Score=79.32 Aligned_cols=27 Identities=41% Similarity=0.395 Sum_probs=24.1
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|..|.|+|.+||||||+++.|++ ++..
T Consensus 1 m~~IgltG~igsGKStv~~~L~~-~G~~ 27 (395)
T PRK03333 1 MLRIGLTGGIGAGKSTVAARLAE-LGAV 27 (395)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CCCe
Confidence 88899999999999999999987 5554
No 168
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.20 E-value=2.5e-05 Score=71.83 Aligned_cols=27 Identities=41% Similarity=0.513 Sum_probs=24.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
++|+|+|++||||||+|..|++.++..
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~ 31 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGE 31 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCc
Confidence 589999999999999999999998754
No 169
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.16 E-value=6.6e-06 Score=69.86 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
+|.|+|..+|||||+|+.|.+.|...
T Consensus 6 ivgiSG~TnsGKTTLak~l~~~f~~~ 31 (225)
T KOG3308|consen 6 IVGISGCTNSGKTTLAKSLHRFFPGC 31 (225)
T ss_pred EEEeecccCCCHhHHHHHHHHHccCC
Confidence 78899999999999999999999753
No 170
>PLN02165 adenylate isopentenyltransferase
Probab=98.16 E-value=1e-05 Score=74.61 Aligned_cols=123 Identities=16% Similarity=0.229 Sum_probs=65.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEE-EecCCcc-----------CCCcc--ccCCCc---hhhHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVR-IIDEASF-----------HLDRN--QSYASM---PAEKNLRGVLR 64 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~-~~~~~~~-----------~~~~~--~~y~~~---~~e~~~r~~l~ 64 (303)
++|+|.|++||||||+|..|++.++...++.+.+ +.....+ ++... ...... .....++....
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~~~a~ 123 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFRSLAS 123 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHHHHHH
Confidence 3899999999999999999999987543333222 1111100 11000 000110 01123332333
Q ss_pred HHHHHhcCCCCEEEE-cCCC-CchHHHHHHH-----HH-------HHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 65 SEVDRSVSKDNIIIV-DSLN-SIKGYRYELW-----CL-------ARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 65 ~~v~~~L~~~~~VIv-D~~n-~~k~~R~~l~-----~~-------ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
..+....+.+...|+ =|+. |++..-+.+. .. .......+++++++++.+.+.+|+.+|-.
T Consensus 124 ~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~Rvd 197 (334)
T PLN02165 124 LSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKRVD 197 (334)
T ss_pred HHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHHHH
Confidence 345555556655444 4444 3333222110 00 00012456788999999999999999975
No 171
>PLN02772 guanylate kinase
Probab=98.11 E-value=1.6e-05 Score=74.81 Aligned_cols=128 Identities=16% Similarity=0.240 Sum_probs=67.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccE-----------------EEecCCccCC-CccccCCC-chhhHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETV-----------------RIIDEASFHL-DRNQSYAS-MPAEKNLRGV 62 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v-----------------~~~~~~~~~~-~~~~~y~~-~~~e~~~r~~ 62 (303)
.+|+|+|++||||||+.+.|.+.+.... ...+ ++++.+.|.. .....|.. ......+.+.
T Consensus 136 k~iVlsGPSGvGKsTL~~~L~~~~p~~~-~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YGT 214 (398)
T PLN02772 136 KPIVISGPSGVGKGTLISMLMKEFPSMF-GFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYGT 214 (398)
T ss_pred cEEEEECCCCCCHHHHHHHHhhhccccc-cccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCccccc
Confidence 3899999999999999999988764311 1111 1111000000 00000100 0001223334
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEE-EecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 047717 63 LRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLY-CDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRR 141 (303)
Q Consensus 63 l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~-l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r 141 (303)
-++.+...+..|..+|+|- -..+.+ .++. ......+|+ +..+.+++.+|+..|+. ..++.+....++
T Consensus 215 sk~~V~~vl~~Gk~vILdL--D~qGar-~Lr~----~~l~~v~IFI~PPSlEeLe~RL~~RGt-----eseE~I~kRL~~ 282 (398)
T PLN02772 215 SIEAVEVVTDSGKRCILDI--DVQGAR-SVRA----SSLEAIFIFICPPSMEELEKRLRARGT-----ETEEQIQKRLRN 282 (398)
T ss_pred cHHHHHHHHHhCCcEEEeC--CHHHHH-HHHH----hcCCeEEEEEeCCCHHHHHHHHHhcCC-----CCHHHHHHHHHH
Confidence 4556777888999999885 223322 2221 112233444 45568899999998865 245555555555
Q ss_pred h
Q 047717 142 F 142 (303)
Q Consensus 142 ~ 142 (303)
+
T Consensus 283 A 283 (398)
T PLN02772 283 A 283 (398)
T ss_pred H
Confidence 5
No 172
>PHA00729 NTP-binding motif containing protein
Probab=98.09 E-value=2.3e-05 Score=68.53 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=57.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL 82 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~ 82 (303)
.|+|+|.||+||||+|..|++.+... ...+..++..........|-+ ...+...+...... ..+-.++|+|+.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~---l~~l~~~~~~~d~~~~~~fid---~~~Ll~~L~~a~~~-~~~~dlLIIDd~ 91 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWK---LNNLSTKDDAWQYVQNSYFFE---LPDALEKIQDAIDN-DYRIPLIIFDDA 91 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhh---cccccchhhHHhcCCcEEEEE---HHHHHHHHHHHHhc-CCCCCEEEEeCC
Confidence 58999999999999999999987521 111111111110001111111 11222233322211 122257899983
Q ss_pred C--CchH-HHH----HHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhh
Q 047717 83 N--SIKG-YRY----ELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 83 n--~~k~-~R~----~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
. ..+. |.. .++.+..... ....+++..++++.+.+++.+|+-
T Consensus 92 G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 92 GIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred chhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCC
Confidence 2 1111 111 1112222222 233477788899999999998863
No 173
>PRK09087 hypothetical protein; Validated
Probab=98.07 E-value=5.2e-05 Score=66.77 Aligned_cols=128 Identities=16% Similarity=0.067 Sum_probs=68.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCc-------------cEEEecCCccCCCccccCCCchhhHHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKE-------------TVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVD 68 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~-------------~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~ 68 (303)
|.++|.|++||||||+++.+++..+..++.. +.+++||... .. ..+ ..++..+.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~-------~~--~~~----~~lf~l~n 111 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDA-------GG--FDE----TGLFHLIN 111 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCC-------CC--CCH----HHHHHHHH
Confidence 4689999999999999999987765432211 1233333211 11 111 23555666
Q ss_pred HhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHh-hhcCCCCCCHHHHHHHHHHhc
Q 047717 69 RSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER-HEKGEAAYDDKIFEDLVRRFE 143 (303)
Q Consensus 69 ~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R-~~~~~~~~~~e~~~~l~~r~E 143 (303)
.....|..+|+-+...-..+.-.+-.+.-... ...++.+..+.+..+....+| .....-..++++++-+..+.+
T Consensus 112 ~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~-~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~ 186 (226)
T PRK09087 112 SVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLK-AATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRME 186 (226)
T ss_pred HHHhCCCeEEEECCCChHHhccccccHHHHHh-CCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Confidence 66666777777775433332211111111111 113666766655433333322 221113578899988888866
No 174
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.04 E-value=4.3e-05 Score=60.42 Aligned_cols=68 Identities=28% Similarity=0.485 Sum_probs=40.2
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCCC
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLN 83 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~n 83 (303)
|+|.|+||+||||+++.+++.++. .++.++-..+. ..|. ...++.++..+.. +... .+..++++|..-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~----~~~~-~~~~~~i~~~~~~-~~~~-~~~~vl~iDe~d 68 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELI----SSYA-GDSEQKIRDFFKK-AKKS-AKPCVLFIDEID 68 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHH----TSST-THHHHHHHHHHHH-HHHT-STSEEEEEETGG
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccc----cccc-ccccccccccccc-cccc-ccceeeeeccch
Confidence 689999999999999999999863 34555532221 0111 2234444433432 2111 124788888743
No 175
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.02 E-value=0.00011 Score=65.01 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=22.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+.++|+|+||+|||+++..++..+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35899999999999999999987764
No 176
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=97.97 E-value=1.5e-05 Score=67.74 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=65.1
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEE-----------------ecCCccC----CC----ccccCCCchh
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRI-----------------IDEASFH----LD----RNQSYASMPA 55 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~-----------------~~~~~~~----~~----~~~~y~~~~~ 55 (303)
|-+|.++|..||||||+++.+. .++...++.|++. ++++-+. +. +.-.|.+...
T Consensus 1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence 7899999999999999999887 5554433322211 1111000 00 0113443221
Q ss_pred --------hHHHHHHHHHHHHH-hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 56 --------EKNLRGVLRSEVDR-SVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 56 --------e~~~r~~l~~~v~~-~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
...+|..++..+.+ .+.....+|+|.+..... +-...-..+|.+.|+.++..+|+.+|.
T Consensus 80 r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~---------~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd 147 (225)
T KOG3220|consen 80 RQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA---------KLLKICHKTVVVTCDEELQLERLVERD 147 (225)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH---------hHHhheeeEEEEEECcHHHHHHHHHhc
Confidence 12233333333444 445557888998653322 222334457888999999999999996
No 177
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.96 E-value=2.2e-05 Score=66.09 Aligned_cols=26 Identities=38% Similarity=0.344 Sum_probs=23.8
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
|++|+|+|.|||||||+|..|+..++
T Consensus 1 ~~~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 1 GMLILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHcC
Confidence 67899999999999999999998865
No 178
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.95 E-value=8.7e-05 Score=66.82 Aligned_cols=96 Identities=24% Similarity=0.300 Sum_probs=57.4
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc--CCCCEEE
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV--SKDNIII 78 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L--~~~~~VI 78 (303)
|.+|+|+|++||||||..+.|.+ ++ ...+|.. .. ..+. .+.......- ...--++
T Consensus 1 m~~vIiTGlSGaGKs~Al~~lED-~G-------y~cvDNl--P~------------~Ll~-~l~~~~~~~~~~~~~~Ai~ 57 (284)
T PF03668_consen 1 MELVIITGLSGAGKSTALRALED-LG-------YYCVDNL--PP------------SLLP-QLIELLAQSNSKIEKVAIV 57 (284)
T ss_pred CeEEEEeCCCcCCHHHHHHHHHh-cC-------eeEEcCC--cH------------HHHH-HHHHHHHhcCCCCceEEEE
Confidence 89999999999999999887643 22 3444421 00 1111 1111221110 1234577
Q ss_pred EcCCCCchHHHHHHHH---HHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717 79 VDSLNSIKGYRYELWC---LARAAGIRYCVLYCDLEEDHCRKWNKE 121 (303)
Q Consensus 79 vD~~n~~k~~R~~l~~---~ak~~~~~~~vI~l~~~~e~~~~R~~~ 121 (303)
+|.-+. ++-..+.. ..+..+..+.+||++|+.+++.+|-.+
T Consensus 58 iD~R~~--~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~e 101 (284)
T PF03668_consen 58 IDIRSR--EFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSE 101 (284)
T ss_pred EeCCCh--HHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHh
Confidence 887442 23233322 234558899999999999999988764
No 179
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=97.95 E-value=1e-05 Score=66.32 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=57.6
Q ss_pred HHHHcCC-cEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHH-HHhcCCCCCCCCCCceeeeCCCCcccccchHHH
Q 047717 95 LARAAGI-RYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLV-RRFEKPDRRNRWDSPLFELCPYKDAIENSSAAI 172 (303)
Q Consensus 95 ~ak~~~~-~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~-~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~ 172 (303)
+...... |.++||+++|+++|.+|+.+|++..+...+.+.+..+. ..|+.--... -..|.+++++++.++..+...+
T Consensus 60 l~~~~~~~pdl~IYL~~~~e~~~~RI~kRgR~~E~~i~~~Yl~~L~~~~y~~~~~~~-~~~~vl~id~~~~d~~~~~~~~ 138 (146)
T PF01712_consen 60 LIEEIPKSPDLIIYLDASPETCLERIKKRGREEEKNIPLEYLERLHEEAYEDWLKKY-DSTPVLVIDADNLDFVENPEDI 138 (146)
T ss_dssp HHHHCCHH-SEEEEEE--HHHHHHHHHHCTTGGGTTS-HHHHHHHHHHHHCCHHSCC-TTTTGCEEEECEEECCSHHTTH
T ss_pred HHHHhhccCCeEEEEeCCHHHHHHHHHHhCCchhcCCCHHHHHHHhHHHHHHHHHhC-CCCceEEEECCccCcccCHHHH
Confidence 4455566 88999999999999999999999776678899999999 7888743322 2469999998765565544445
Q ss_pred HHHH
Q 047717 173 LDAV 176 (303)
Q Consensus 173 ~ei~ 176 (303)
+.++
T Consensus 139 ~~~~ 142 (146)
T PF01712_consen 139 EQVI 142 (146)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 180
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=97.87 E-value=5.5e-05 Score=65.73 Aligned_cols=119 Identities=17% Similarity=0.221 Sum_probs=67.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccc--CCcc----EEEecCCccCCCccc--cCCCchhhHHHHH--------HHHH-
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESE--AKET----VRIIDEASFHLDRNQ--SYASMPAEKNLRG--------VLRS- 65 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~--~~~~----v~~~~~~~~~~~~~~--~y~~~~~e~~~r~--------~l~~- 65 (303)
++.+.|.||+||||++..+.+.+.... ++.+ .+++..++||+.+.. .|.+.......|+ .+.+
T Consensus 121 l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~lfl~l 200 (323)
T KOG2702|consen 121 LTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSNLFLQL 200 (323)
T ss_pred eeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHHHHHHH
Confidence 789999999999999999998765431 1111 133566677764432 3443322211111 1111
Q ss_pred --HH-------------HHhc-----------CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHH
Q 047717 66 --EV-------------DRSV-----------SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWN 119 (303)
Q Consensus 66 --~v-------------~~~L-----------~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~ 119 (303)
.+ .+++ ...++||++|.. +--.-..|..+.+-... ..|+++..+++.+|.
T Consensus 201 ~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnY-lLl~~~~Wkdi~k~~d~---k~~idV~~~~a~~RV 276 (323)
T KOG2702|consen 201 CKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNY-LLLDQENWKDIYKTLDD---KYKIDVDYEAAEERV 276 (323)
T ss_pred HHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccE-EEecCccHHHHHHHhhh---heeccccHHHHHHHH
Confidence 11 1111 245789999953 21111122233343333 578999999999999
Q ss_pred HHhhhc
Q 047717 120 KERHEK 125 (303)
Q Consensus 120 ~~R~~~ 125 (303)
++|.-.
T Consensus 277 a~RHl~ 282 (323)
T KOG2702|consen 277 AKRHLQ 282 (323)
T ss_pred HHHhhc
Confidence 999754
No 181
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.85 E-value=7.6e-05 Score=64.99 Aligned_cols=36 Identities=28% Similarity=0.330 Sum_probs=27.5
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
-+++|+|||||||.+....+.|...+....++.+|.
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDP 40 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDP 40 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCC
Confidence 578999999999999999999887643334444443
No 182
>PHA03136 thymidine kinase; Provisional
Probab=97.84 E-value=0.00028 Score=65.92 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=37.0
Q ss_pred CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717 101 IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK 144 (303)
Q Consensus 101 ~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~ 144 (303)
.+..+||++++.+++.+|+.+|++.++ ..+.+.+.++...|+.
T Consensus 191 ~pD~IIyL~l~~e~~~~RI~kRgR~~E-~I~~~YL~~L~~~Y~~ 233 (378)
T PHA03136 191 HGGNIVIMDLDECEHAERIIARGRPGE-AIDVRFLCALHNIYIC 233 (378)
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCCcc-CCCHHHHHHHHHHHHH
Confidence 355789999999999999999999775 7888888888887764
No 183
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.82 E-value=0.00022 Score=59.71 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=28.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
+++++|+|||||||++..++..+... +..+.+++-+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEcC
Confidence 68999999999999999999988654 4456665533
No 184
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.81 E-value=0.00021 Score=58.66 Aligned_cols=118 Identities=15% Similarity=0.203 Sum_probs=73.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCC--ccEEE--ecCCccCCCccccCCC-----------------chhhHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAK--ETVRI--IDEASFHLDRNQSYAS-----------------MPAEKNLR 60 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~--~~v~~--~~~~~~~~~~~~~y~~-----------------~~~e~~~r 60 (303)
.+|+|.|.|.||||++|.++++.+...... .+.+. +-+... .....|.. ..-|...+
T Consensus 24 riVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~--d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~~~ 101 (205)
T COG3896 24 RIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQL--DLARGYTWDSAVEADGLEWVTVHPGPILELAMH 101 (205)
T ss_pred eEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhh--ccccccccccccccCCceeeEeechhHHHHHHH
Confidence 489999999999999999999988765321 11110 000000 00011111 11233333
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 61 GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 61 ~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
...-++...+..|..||.|+.-..+++- ..|+-.-.+.++..|-+.||.|+..+|-..|+.
T Consensus 102 -~~r~ai~a~ad~G~~~i~Ddv~~~r~~L--~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~d 162 (205)
T COG3896 102 -SRRRAIRAYADNGMNVIADDVIWTREWL--VDCLRVLEGCRVWMVGVHVPDEEGARRELRRGD 162 (205)
T ss_pred -HHHHHHHHHhccCcceeehhcccchhhH--HHHHHHHhCCceEEEEeeccHHHHHHHHhhcCC
Confidence 2333455566789999999976655432 234545568999999999999998888777754
No 185
>PRK06893 DNA replication initiation factor; Validated
Probab=97.81 E-value=0.00037 Score=61.41 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=23.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|.++|.|+||+|||+++..++..+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999988754
No 186
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.79 E-value=0.0011 Score=57.21 Aligned_cols=134 Identities=21% Similarity=0.295 Sum_probs=70.8
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC----ccCC------------CccccCCCch-------hhH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA----SFHL------------DRNQSYASMP-------AEK 57 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~----~~~~------------~~~~~y~~~~-------~e~ 57 (303)
|.+++|.|++|+|||.+|-.|++.++.. ++..|.. .+.+ .++ .|-++. ..+
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g~p-----vI~~Driq~y~~l~v~Sgrp~~~el~~~~R-iyL~~r~l~~G~i~a~ 74 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTGAP-----VISLDRIQCYPELSVGSGRPTPSELKGTRR-IYLDDRPLSDGIINAE 74 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--E-----EEEE-SGGG-GGGTTTTT---SGGGTT-EE-EES----GGG-S--HH
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhCCC-----EEEecceecccccccccCCCCHHHHcccce-eeeccccccCCCcCHH
Confidence 8999999999999999999999999764 4444421 0000 011 232221 123
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHH----cCCcEEEEEEecCHHH-HHHHHHHhhhcC--CCCC
Q 047717 58 NLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARA----AGIRYCVLYCDLEEDH-CRKWNKERHEKG--EAAY 130 (303)
Q Consensus 58 ~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~----~~~~~~vI~l~~~~e~-~~~R~~~R~~~~--~~~~ 130 (303)
.+...+.+.+.+.-. +..+|++|... --+.|+++. .+....+.++..+.+. =..|..+|.++. .+.-
T Consensus 75 ea~~~Li~~v~~~~~-~~~~IlEGGSI-----SLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p~~~ 148 (233)
T PF01745_consen 75 EAHERLISEVNSYSA-HGGLILEGGSI-----SLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRPDSS 148 (233)
T ss_dssp HHHHHHHHHHHTTTT-SSEEEEEE--H-----HHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS--SS
T ss_pred HHHHHHHHHHHhccc-cCceEEeCchH-----HHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCCCCC
Confidence 344456666655555 78999999542 223445543 3556777888776554 445555554421 1122
Q ss_pred CHHHHHHHHHHhcCCC
Q 047717 131 DDKIFEDLVRRFEKPD 146 (303)
Q Consensus 131 ~~e~~~~l~~r~E~P~ 146 (303)
.+..++++..-+..|.
T Consensus 149 ~~Sll~EL~~lW~~p~ 164 (233)
T PF01745_consen 149 GPSLLEELVALWNDPA 164 (233)
T ss_dssp S--HHHHHHHHHTSTT
T ss_pred CCcHHHHHHHHHhCcc
Confidence 4588899988877765
No 187
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00022 Score=65.02 Aligned_cols=117 Identities=17% Similarity=0.206 Sum_probs=69.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEe-c-----------CCccCCCcc--ccCCCc--hhhHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRII-D-----------EASFHLDRN--QSYASM--PAEKNLRGVLRSE 66 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~-~-----------~~~~~~~~~--~~y~~~--~~e~~~r~~l~~~ 66 (303)
+|+|.|+.|||||.+|-.||.+|+...++.+-+-+ . ++.-++..+ +..... .....++..-..+
T Consensus 9 VvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a~~a 88 (348)
T KOG1384|consen 9 VVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDASRA 88 (348)
T ss_pred EEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHHHHH
Confidence 89999999999999999999999875443322111 0 011111000 001111 1122333333345
Q ss_pred HHHhcCCCCE-EEEcCCCCchHHHHHHHHHHH------------------HcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 67 VDRSVSKDNI-IIVDSLNSIKGYRYELWCLAR------------------AAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 67 v~~~L~~~~~-VIvD~~n~~k~~R~~l~~~ak------------------~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
++...++|.+ +|+-|+|++-.. + +++ +..+.+|++|++++..++-+|+.+|-.
T Consensus 89 ie~I~~rgk~PIv~GGs~~yi~a---l--~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RVD 160 (348)
T KOG1384|consen 89 IEEIHSRGKLPIVVGGSNSYLQA---L--LSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRVD 160 (348)
T ss_pred HHHHHhCCCCCEEeCCchhhHHH---H--hhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHHHH
Confidence 6666777765 555566654221 1 111 112678999999999999999999975
No 188
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.73 E-value=0.00025 Score=64.45 Aligned_cols=25 Identities=40% Similarity=0.484 Sum_probs=23.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+|+|+|++|||||++|..|++.++.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~ 25 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNA 25 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCC
Confidence 5899999999999999999999864
No 189
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.00046 Score=65.35 Aligned_cols=118 Identities=17% Similarity=0.181 Sum_probs=81.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---cCC-CccccCCCch-h-----hHHHHHHHHHHHHHhc-
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---FHL-DRNQSYASMP-A-----EKNLRGVLRSEVDRSV- 71 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~~~-~~~~~y~~~~-~-----e~~~r~~l~~~v~~~L- 71 (303)
+|++.|+|++|||.++..|.+++++.++...+..+++.. ... .....|...+ . ++..+..+.. +...+
T Consensus 30 ~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s~~ff~p~n~~~~~lr~~~a~~~l~D-~~~~l~ 108 (438)
T KOG0234|consen 30 VIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDSEPFFLPDNAEASKLRKQLALLALND-LLHFLI 108 (438)
T ss_pred EEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhcccccccccccCChhhhhhhHHHHHHHhhh-HHHHhh
Confidence 799999999999999999999999876555555544321 000 0111232211 1 1122212222 22333
Q ss_pred -CCCCEEEEcCCCCchHHHHHHHHHHH-HcCCcEEEEEEecCHHHHHHHHHH
Q 047717 72 -SKDNIIIVDSLNSIKGYRYELWCLAR-AAGIRYCVLYCDLEEDHCRKWNKE 121 (303)
Q Consensus 72 -~~~~~VIvD~~n~~k~~R~~l~~~ak-~~~~~~~vI~l~~~~e~~~~R~~~ 121 (303)
..|.++|.|++|..+..|..+...++ ..+..+..|...|.....+.+|..
T Consensus 109 ~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~ 160 (438)
T KOG0234|consen 109 KENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIR 160 (438)
T ss_pred ccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhh
Confidence 36899999999999999999999996 788888888888999988888886
No 190
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.72 E-value=0.00036 Score=67.18 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=29.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
+|+|+|++||||||.+..|+.++... +..+.+++-+
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~--g~kV~lV~~D 132 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKK--GLKVGLVAAD 132 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEecCC
Confidence 78999999999999999999998764 4566666544
No 191
>PRK05642 DNA replication initiation factor; Validated
Probab=97.71 E-value=0.00059 Score=60.36 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=25.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
.++|+|.+|+|||++++.++.++... +..+++++
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~ 80 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLP 80 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEee
Confidence 57899999999999999998876543 34455444
No 192
>PRK08727 hypothetical protein; Validated
Probab=97.70 E-value=0.0014 Score=57.82 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=25.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEe
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRII 37 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~ 37 (303)
.++|+|.+|+|||+++..++..+... +..+.++
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~ 75 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYL 75 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 48999999999999999998876543 3344443
No 193
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=97.68 E-value=0.0001 Score=68.22 Aligned_cols=123 Identities=18% Similarity=0.226 Sum_probs=82.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL 82 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~ 82 (303)
+|++.|+|||||||+++.. +.. ....++..+.++... . .+. +-.+.|..+..||+|.+
T Consensus 271 iV~~vgfp~sGks~f~a~~---~~~----~~y~~vn~d~lg~~~----------~----C~~-~~~e~l~~~~sVvidnt 328 (422)
T KOG2134|consen 271 IVVAVGFPGSGKSTFAAKR---VVP----NGYKIVNADTLGTPQ----------N----CLL-ANAEALKHGKSVVIDNT 328 (422)
T ss_pred EEEEEecCCCCcchhhhhh---ccc----CceeEeecccCCCch----------h----hHH-HHHHHhhcccEEeeCCC
Confidence 6899999999999998863 221 123444444433321 1 222 34467788899999999
Q ss_pred CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC--CCCCHHHHHHHHHHhcCCCC
Q 047717 83 NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE--AAYDDKIFEDLVRRFEKPDR 147 (303)
Q Consensus 83 n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~--~~~~~e~~~~l~~r~E~P~~ 147 (303)
|+....|.-+...|.+.+.+...+.+.++.+.+.-.+..|.-... ...++-++.-...+|+.|.-
T Consensus 329 ~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~eq~~hn~~fR~~~~~~~~~~~dm~~~~~k~kf~~ptl 395 (422)
T KOG2134|consen 329 NPDAESRKYYLDCATEREIPIRCFEMNSSVEQAQHNNRFRELSDSVKDSGSDMVFNSEKSKFQKPTL 395 (422)
T ss_pred CcchHHHHHHhhhHHHhCccceeeeeccHHHhhhccccchhhccchhcccccceeehhhccccCchH
Confidence 999999988888889999999899999999998887777754211 01122233444445666553
No 194
>PRK06620 hypothetical protein; Validated
Probab=97.67 E-value=0.00097 Score=58.19 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
.++|.|+||||||++++.++...+
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhccC
Confidence 489999999999999999887664
No 195
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=97.67 E-value=0.0021 Score=56.64 Aligned_cols=144 Identities=13% Similarity=0.122 Sum_probs=88.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEEEcC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIIIVDS 81 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VIvD~ 81 (303)
||+|.|..||||....+.|.+.++..+ ..|+.+.. ...+...+..+- .+-+.| ..|.+.|+|.
T Consensus 33 lIv~eG~DaAGKg~~I~~l~~~lDPRg--~~v~~~~~-------------pt~eE~~~p~lw-Rfw~~lP~~G~i~IF~r 96 (230)
T TIGR03707 33 VIVFEGRDAAGKGGTIKRITEHLNPRG--ARVVALPK-------------PSDRERTQWYFQ-RYVQHLPAAGEIVLFDR 96 (230)
T ss_pred EEEEeCCCCCCchHHHHHHHHhcCCCe--eEEEeCCC-------------CCHHHHcChHHH-HHHHhCCCCCeEEEEeC
Confidence 799999999999999999999987652 33433321 111111121222 233444 4788999998
Q ss_pred CCCchHH---------------HH----HHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCC--CCH------HH
Q 047717 82 LNSIKGY---------------RY----ELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAA--YDD------KI 134 (303)
Q Consensus 82 ~n~~k~~---------------R~----~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~--~~~------e~ 134 (303)
..|..-. |+ .+.....+.|+....+|+..|.++-.+|+.+|..+.... +++ +.
T Consensus 97 SwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~Wk~~~~D~~~~~~ 176 (230)
T TIGR03707 97 SWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQWKLSPMDLASLDR 176 (230)
T ss_pred chhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHHHHHHHHh
Confidence 8764421 11 122223456888899999999999999999998654322 222 22
Q ss_pred HHHHHHHhcCCCC-CCCCCCceeeeCCCC
Q 047717 135 FEDLVRRFEKPDR-RNRWDSPLFELCPYK 162 (303)
Q Consensus 135 ~~~l~~r~E~P~~-~~rwd~pl~~i~~~~ 162 (303)
+++....||.--. .+.=.+|.++|++++
T Consensus 177 yd~y~~a~e~~l~~T~t~~APW~iI~a~d 205 (230)
T TIGR03707 177 WDDYSRAKDEMFARTDTPEAPWTVVRSDD 205 (230)
T ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence 3444444442211 233346889998763
No 196
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.66 E-value=8.8e-05 Score=65.29 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=67.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccc-CCccEE------EecCCccCCCccccC------CCchhh-----------HH
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESE-AKETVR------IIDEASFHLDRNQSY------ASMPAE-----------KN 58 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~-~~~~v~------~~~~~~~~~~~~~~y------~~~~~e-----------~~ 58 (303)
+|+|-|.||.||||+|..||.+|+-.. ++.+.+ +++.+-+..-..+.| .+...+ ..
T Consensus 91 IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~dqa~~ 170 (299)
T COG2074 91 IILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFEDQASA 170 (299)
T ss_pred EEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHHHhHH
Confidence 678889999999999999999997542 111110 011100000000111 111000 11
Q ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEec-CHHHHHHHHHHhhh
Q 047717 59 LRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDL-EEDHCRKWNKERHE 124 (303)
Q Consensus 59 ~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~-~~e~~~~R~~~R~~ 124 (303)
+-.-+...+.|++..|..+|++|....+++-.+- ..+......++.+ +.+..+.|..+|..
T Consensus 171 V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~-----~~~~n~~~~~l~i~dee~Hr~RF~~R~~ 232 (299)
T COG2074 171 VMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEE-----ALGNNVFMFMLYIADEELHRERFYDRIR 232 (299)
T ss_pred HHHHHHHHHHHHHhcCcceEEEeeeeccccccHh-----hhccceEEEEEEeCCHHHHHHHHHHHHH
Confidence 1113344677899999999999999888864321 1123344455544 56668899998875
No 197
>PF05729 NACHT: NACHT domain
Probab=97.64 E-value=0.00041 Score=56.90 Aligned_cols=26 Identities=42% Similarity=0.580 Sum_probs=23.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
+++|.|.||+||||+++.++..+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhc
Confidence 78999999999999999999988764
No 198
>PF13173 AAA_14: AAA domain
Probab=97.64 E-value=0.00055 Score=54.55 Aligned_cols=98 Identities=14% Similarity=0.121 Sum_probs=57.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEEEc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIIIVD 80 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VIvD 80 (303)
++++|.|+.|+||||+++++++.+.. ...++.++-+.... .. ... .. +...+.+.. .....|++|
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~---~~~~~yi~~~~~~~-----~~----~~~-~~-~~~~~~~~~~~~~~~i~iD 68 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLP---PENILYINFDDPRD-----RR----LAD-PD-LLEYFLELIKPGKKYIFID 68 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcc---cccceeeccCCHHH-----HH----Hhh-hh-hHHHHHHhhccCCcEEEEe
Confidence 47999999999999999999987751 12233333111100 00 000 00 111222222 256889999
Q ss_pred CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHH
Q 047717 81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHC 115 (303)
Q Consensus 81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~ 115 (303)
-..+.+.+...+..+.... +.+.|++..+....
T Consensus 69 Eiq~~~~~~~~lk~l~d~~--~~~~ii~tgS~~~~ 101 (128)
T PF13173_consen 69 EIQYLPDWEDALKFLVDNG--PNIKIILTGSSSSL 101 (128)
T ss_pred hhhhhccHHHHHHHHHHhc--cCceEEEEccchHH
Confidence 9888888777776665533 34566676665443
No 199
>PLN03025 replication factor C subunit; Provisional
Probab=97.63 E-value=0.0023 Score=59.26 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=23.6
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+|-++|.|+||+||||+|..+++.+..
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 356789999999999999999998743
No 200
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.63 E-value=0.0002 Score=60.15 Aligned_cols=125 Identities=26% Similarity=0.352 Sum_probs=67.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc-ccCCC---chhhHHHHHHHH--------HHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN-QSYAS---MPAEKNLRGVLR--------SEVDR 69 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~-~~y~~---~~~e~~~r~~l~--------~~v~~ 69 (303)
.+|++.|.-.|||||.+..|.+.+...........+.+-...+..- ..|-. ......++ .++ +.+..
T Consensus 6 ~liV~eGlDrsgKstQ~~~l~~~l~~~~~~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iH-LlFSAnRwe~~~~i~e 84 (208)
T KOG3327|consen 6 ALIVLEGLDRSGKSTQCGKLVESLIPGLDPAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIH-LLFSANRWEHVSLIKE 84 (208)
T ss_pred cEEeeeccccCCceeehhHHHHHHHhccChHHhhhcchhcccccHHHHHHHHhccCCcHHHHH-HHhccchhhHHHHHHH
Confidence 4899999999999999999999885432111111111111111000 01100 01111222 232 34667
Q ss_pred hcCCCCEEEEcCCCCc-------hHHHHHHHHHHHHcC--CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCH
Q 047717 70 SVSKDNIIIVDSLNSI-------KGYRYELWCLARAAG--IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDD 132 (303)
Q Consensus 70 ~L~~~~~VIvD~~n~~-------k~~R~~l~~~ak~~~--~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~ 132 (303)
.+.+|..+|||-..|. || -..-||.+-..| .|..++|++++++.+.+ |+.-|.++|..
T Consensus 85 ~l~kg~~~ivDRY~~SGvAyS~AKg-l~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~----rggfG~Erye~ 151 (208)
T KOG3327|consen 85 KLAKGTTLIVDRYSFSGVAYSAAKG-LDLDWCKQPDVGLPKPDLVLFLDVSPEDAAR----RGGFGEERYET 151 (208)
T ss_pred HHhcCCeEEEecceecchhhhhhcC-CCcchhhCCccCCCCCCeEEEEeCCHHHHHH----hcCcchhHHHH
Confidence 7889999999974321 22 112244444433 47889999999998433 33323345554
No 201
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.63 E-value=0.00079 Score=53.30 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=26.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
.++|.|+||+||||+++.++..+... +..++.++
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~ 54 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLN 54 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEe
Confidence 58999999999999999999988532 23444444
No 202
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.58 E-value=0.0003 Score=59.61 Aligned_cols=112 Identities=21% Similarity=0.180 Sum_probs=54.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEE-------ecCCccCC-Cc----ccc--------CC----CchhhHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRI-------IDEASFHL-DR----NQS--------YA----SMPAEKN 58 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~-------~~~~~~~~-~~----~~~--------y~----~~~~e~~ 58 (303)
+|.|.|..|||++++|+.|++.|+..+.+.+++. ++++.+.. .. ... |. +......
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDK 80 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-HHHHHHCT------------SS-HHH--HH---HHS--------------H
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHH
Confidence 6999999999999999999999987643322111 11111000 00 000 00 0011122
Q ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 59 LRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 59 ~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
+...+...+.++..++..||+--.. .++.+... .+.-|++.+|.+...+|..+|..
T Consensus 81 ~~~~~~~~i~~la~~~~~Vi~GR~a---------~~il~~~~-~~l~V~i~A~~~~Rv~ri~~~~~ 136 (179)
T PF13189_consen 81 IFRAQSEIIRELAAKGNCVIVGRCA---------NYILRDIP-NVLHVFIYAPLEFRVERIMEREG 136 (179)
T ss_dssp HHHHHHHHHHHHHH---EEEESTTH---------HHHTTT-T-TEEEEEEEE-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCEEEEecCH---------hhhhCCCC-CeEEEEEECCHHHHHHHHHHHcC
Confidence 2223333444444556555543211 12334333 57899999999999999998853
No 203
>PLN02748 tRNA dimethylallyltransferase
Probab=97.58 E-value=0.00038 Score=67.34 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=25.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESE 29 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~ 29 (303)
++|+|+|++||||||+|..|++.++...
T Consensus 23 ~~i~i~GptgsGKs~la~~la~~~~~ei 50 (468)
T PLN02748 23 KVVVVMGPTGSGKSKLAVDLASHFPVEI 50 (468)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCeeE
Confidence 4899999999999999999999987543
No 204
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.57 E-value=0.00014 Score=60.45 Aligned_cols=29 Identities=31% Similarity=0.326 Sum_probs=26.9
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESE 29 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~ 29 (303)
|++|.|+|++||||||+++.|...+...+
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999997654
No 205
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.57 E-value=0.00013 Score=61.43 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=26.2
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESE 29 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~ 29 (303)
||++.|+|++||||||+++.|...+...+
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g 34 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCARG 34 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhcC
Confidence 58999999999999999999999987653
No 206
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.57 E-value=0.0028 Score=61.70 Aligned_cols=163 Identities=15% Similarity=0.095 Sum_probs=96.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEEEcC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIIIVDS 81 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VIvD~ 81 (303)
||+|.|.-||||++..+.|.+.+... +..|+.+.... .+...+..+- .+-+.| ..|.++|+|.
T Consensus 42 lIv~eG~DaaGKg~~I~~l~~~ldpr--g~~v~~~~~P~-------------~eE~~~~flw-Rfw~~lP~~G~I~IFdR 105 (493)
T TIGR03708 42 IILIEGWDGAGKGETINLLNEWMDPR--GIETHAFGRPS-------------DEERERPPMW-RFWRRLPPKGKIGIFFG 105 (493)
T ss_pred EEEEeCCCCCChHHHHHHHHHHhCcC--ccEEEeCCCCC-------------HHHhcCcHHH-HHHHhCCCCCeEEEEcC
Confidence 79999999999999999999999876 34555443211 1111111222 233344 4788999998
Q ss_pred CCCchH-------------H--HH----HHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC--CH------HH
Q 047717 82 LNSIKG-------------Y--RY----ELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY--DD------KI 134 (303)
Q Consensus 82 ~n~~k~-------------~--R~----~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~--~~------e~ 134 (303)
..|..- + |+ .+.....+.|+....+|+.++.++-.+|+.+|..+....+ ++ +.
T Consensus 106 SWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~WK~s~~D~~~r~~ 185 (493)
T TIGR03708 106 SWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETRWRVTPEDWKQLKV 185 (493)
T ss_pred cccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccccCCCHHHHHHHHh
Confidence 776432 1 11 2222334678999999999999999999999986543222 22 22
Q ss_pred HHHHHHHhcCCCC-CCCCCCceeeeCCCCcccccchHHHHHHHHHHHhc
Q 047717 135 FEDLVRRFEKPDR-RNRWDSPLFELCPYKDAIENSSAAILDAVAYLTKK 182 (303)
Q Consensus 135 ~~~l~~r~E~P~~-~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~~ 182 (303)
+++....||.-.. .+.=.+|.++|++++ .--..-..+.-|++.|-+.
T Consensus 186 wd~Y~~a~e~ml~~T~t~~APW~vI~add-K~~arl~v~~~il~~L~~~ 233 (493)
T TIGR03708 186 YDRYRKLAERMLRYTSTPYAPWTVVEGED-DRYRSLTVGRTLLAAIRAR 233 (493)
T ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEcCCC-HHHHHHHHHHHHHHHHHHH
Confidence 3444444433222 222346889998753 2222233344455555443
No 207
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.56 E-value=0.00077 Score=62.37 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=23.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|.++|.|+||+||||+|+.+++.+...
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~ 63 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGD 63 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 568999999999999999999988643
No 208
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.54 E-value=0.0013 Score=62.94 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=30.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS 41 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~ 41 (303)
+|+|+|++||||||.+..|+.++... +..|.+++-+.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~--G~kV~lV~~D~ 138 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRK--GFKPCLVCADT 138 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEcCcc
Confidence 79999999999999999999988654 45676666543
No 209
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.52 E-value=0.0006 Score=55.51 Aligned_cols=35 Identities=31% Similarity=0.367 Sum_probs=27.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
+++|+|.||+||||++..++..+... +..+++++.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEEC
Confidence 47899999999999999999887543 344555553
No 210
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00019 Score=65.35 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=24.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.||++.||||.|||++||+|+++|.-
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhhee
Confidence 48999999999999999999999864
No 211
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=97.49 E-value=0.0047 Score=55.47 Aligned_cols=144 Identities=11% Similarity=0.176 Sum_probs=88.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEEEcC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIIIVDS 81 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VIvD~ 81 (303)
||+|.|..||||....+.|.+.+...+ ..|+.+... ..+...+..+- .+-+.| ..|.+.|+|.
T Consensus 58 lIv~eG~DaAGKG~~I~~l~~~lDPRg--~~V~s~~~P-------------t~eE~~~p~lW-Rfw~~lP~~G~i~IF~R 121 (264)
T TIGR03709 58 LLVLQAMDAAGKDGTIRHVMSGVNPQG--CQVTSFKAP-------------SAEELDHDFLW-RIHKALPERGEIGIFNR 121 (264)
T ss_pred EEEEECCCCCCchHHHHHHHHhcCCCe--eEEEeCCCC-------------CHHHHcCchHH-HHHHhCCCCCeEEEEcC
Confidence 799999999999999999999987652 334433211 11111121222 233444 4789999998
Q ss_pred CCCchH-------------HHH------HHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCC--CCH------HH
Q 047717 82 LNSIKG-------------YRY------ELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAA--YDD------KI 134 (303)
Q Consensus 82 ~n~~k~-------------~R~------~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~--~~~------e~ 134 (303)
..|..- ++. .+.....+.|+..+.+|+.++.++-.+|+.+|..+.... +++ +.
T Consensus 122 SWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~Wk~s~~D~~~~~~ 201 (264)
T TIGR03709 122 SHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNWKFSPADLKERAY 201 (264)
T ss_pred ccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcccccCCHHHHHHHHh
Confidence 877432 111 122223456888999999999999999999997643322 222 22
Q ss_pred HHHHHHHhcCCCC-CCCCCCceeeeCCCC
Q 047717 135 FEDLVRRFEKPDR-RNRWDSPLFELCPYK 162 (303)
Q Consensus 135 ~~~l~~r~E~P~~-~~rwd~pl~~i~~~~ 162 (303)
+++....||.--. .+.=.+|.++|++++
T Consensus 202 yd~y~~a~e~~l~~T~t~~APW~iI~a~d 230 (264)
T TIGR03709 202 WDDYMEAYEDALTATSTKHAPWYVVPADD 230 (264)
T ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence 3334343333222 233346889998763
No 212
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.48 E-value=0.0017 Score=58.75 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=30.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.+|+++|+||+||||.+..|+..+... +..|.+++-+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D 109 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGD 109 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCC
Confidence 478899999999999999999988654 4567776644
No 213
>PRK14974 cell division protein FtsY; Provisional
Probab=97.48 E-value=0.0013 Score=61.15 Aligned_cols=37 Identities=30% Similarity=0.312 Sum_probs=28.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.+|+|+|+|||||||.+..|+..+... +..+.+++.+
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~--g~~V~li~~D 177 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKN--GFSVVIAAGD 177 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEecCC
Confidence 479999999999999999999888654 3455555533
No 214
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.47 E-value=0.00061 Score=58.64 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=22.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+|+|+|++||||||+.+.|...+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 7999999999999999999888764
No 215
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.0013 Score=55.86 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=43.3
Q ss_pred CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCC----CceeeeCC
Q 047717 101 IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWD----SPLFELCP 160 (303)
Q Consensus 101 ~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd----~pl~~i~~ 160 (303)
....+||+.+++++|.+|+..|.+..+..++-+.++++-..-|.-.-+.+++ .|.++++.
T Consensus 153 ~~dgiIYLrasPetc~~Ri~~R~R~EE~gipL~YLe~LH~~HE~WLi~~~f~~lq~vpvLVLDa 216 (244)
T KOG4235|consen 153 SLDGIIYLRASPETCYKRIYLRAREEEKGIPLKYLEALHELHESWLIKLHFPNLQAVPVLVLDA 216 (244)
T ss_pred ccceEEEeecChHHHHHHHHHHhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhHhhcCCeEEEec
Confidence 3567999999999999999999887666788888888776655422122222 47777763
No 216
>PRK13768 GTPase; Provisional
Probab=97.46 E-value=0.00053 Score=61.41 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=29.9
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
|.+|++.|++||||||++..++..+... +.++.+++
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~--g~~v~~i~ 37 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQ--GYDVAIVN 37 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhc--CCceEEEE
Confidence 4689999999999999999999998654 45666655
No 217
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=97.45 E-value=0.0017 Score=57.23 Aligned_cols=138 Identities=20% Similarity=0.165 Sum_probs=76.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEEEcC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIIIVDS 81 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VIvD~ 81 (303)
||+|.|..||||+.+.+.|.+.+...+ ..|+.+... ..+...+..+- .+-+.| ..|.+.|+|.
T Consensus 33 lIl~eG~d~sGKg~~I~~l~~~lDPR~--~~v~~~~~p-------------t~eE~~~p~lw-Rfw~~lP~~G~I~if~r 96 (228)
T PF03976_consen 33 LILFEGWDASGKGGTINRLIEWLDPRG--FRVHAFGKP-------------TDEELRRPFLW-RFWRALPARGQIGIFDR 96 (228)
T ss_dssp EEEEEESTTSSHHHHHHHHHCCS-GGG--EEEEE-SS---------------HHHHTS-TTH-HHHTTS--TT-EEEEES
T ss_pred EEEEeccccCCchHHHHHHHHhCCCCe--eEEEeCCCC-------------ChhHcCCCcHH-HHHHhCCCCCEEEEEec
Confidence 799999999999999999988887653 344443311 11111111111 222344 4788999998
Q ss_pred CCCchHH-------------HH------HHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCC--CCH--------
Q 047717 82 LNSIKGY-------------RY------ELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAA--YDD-------- 132 (303)
Q Consensus 82 ~n~~k~~-------------R~------~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~--~~~-------- 132 (303)
..|..-. .. .+.....+.|+....+|+..+.++-.+|+.+|..+.... +++
T Consensus 97 SWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~wkv~~~D~~~~~~ 176 (228)
T PF03976_consen 97 SWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLKRWKVSPEDWEQRKH 176 (228)
T ss_dssp -GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCCGGG--HHHHHHHCC
T ss_pred chhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCccccccCCHHHHHHHhh
Confidence 8764321 11 122223456888889999999999999999997753221 122
Q ss_pred -----HHHHHHHHHhcCCCCCCCCCCceeeeCCCC
Q 047717 133 -----KIFEDLVRRFEKPDRRNRWDSPLFELCPYK 162 (303)
Q Consensus 133 -----e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~ 162 (303)
..+++|..+=.. =.+|..+|++++
T Consensus 177 yd~y~~a~~~~l~~T~t------~~APW~iI~a~d 205 (228)
T PF03976_consen 177 YDRYQKAYEEMLERTDT------PYAPWHIIPADD 205 (228)
T ss_dssp HHHHHHHHHHHHHHH-B------SSS-EEEEE-SS
T ss_pred HHHHHHHHHHHHhccCC------CCCCeEEEeCCC
Confidence 333444443332 346889998763
No 218
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=97.45 E-value=0.0017 Score=57.54 Aligned_cols=96 Identities=19% Similarity=0.240 Sum_probs=55.3
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHh-cC-CCCEEE
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRS-VS-KDNIII 78 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~-L~-~~~~VI 78 (303)
|.+|+|+|.+|||||+-.+.|.+ ++ ..++|. +.. ..+- .+...+... .+ ..--|+
T Consensus 1 m~lvIVTGlSGAGKsvAl~~lED-lG-------yycvDN--LPp------------~Llp-~~~~~~~~~~~~~~kvAv~ 57 (286)
T COG1660 1 MRLVIVTGLSGAGKSVALRVLED-LG-------YYCVDN--LPP------------QLLP-KLADLMLTLESRITKVAVV 57 (286)
T ss_pred CcEEEEecCCCCcHHHHHHHHHh-cC-------eeeecC--CCH------------HHHH-HHHHHHhhcccCCceEEEE
Confidence 88999999999999998887643 22 234441 110 0000 111111110 11 223477
Q ss_pred EcCCCCchHHHHHHHH---HHHHc-CCcEEEEEEecCHHHHHHHHHH
Q 047717 79 VDSLNSIKGYRYELWC---LARAA-GIRYCVLYCDLEEDHCRKWNKE 121 (303)
Q Consensus 79 vD~~n~~k~~R~~l~~---~ak~~-~~~~~vI~l~~~~e~~~~R~~~ 121 (303)
+|--+. .+...+.. ..+.. +....++|++++.+++.+|-.+
T Consensus 58 iDiRs~--~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~e 102 (286)
T COG1660 58 IDVRSR--EFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSE 102 (286)
T ss_pred Eecccc--hhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhh
Confidence 887543 33333333 33444 3568899999999999999764
No 219
>PRK04296 thymidine kinase; Provisional
Probab=97.45 E-value=0.001 Score=56.89 Aligned_cols=105 Identities=16% Similarity=0.083 Sum_probs=53.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC---CccCC---CccccCCCch-hhHHHHHHHHHHHHHhcCCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE---ASFHL---DRNQSYASMP-AEKNLRGVLRSEVDRSVSKD 74 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~---~~~~~---~~~~~y~~~~-~e~~~r~~l~~~v~~~L~~~ 74 (303)
.+++++|+|||||||.+..++..+... +..++++.. ..... ...-...-.. ...... .+...+...-..-
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDT-DIFELIEEEGEKI 79 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEeccccccccCCcEecCCCCcccceEeCChH-HHHHHHHhhCCCC
Confidence 488999999999999999998887543 345555421 11110 0000000000 000011 1111222211133
Q ss_pred CEEEEcCCCCc-hHHHHHHHHHHHHcCCcEEEEEEe
Q 047717 75 NIIIVDSLNSI-KGYRYELWCLARAAGIRYCVLYCD 109 (303)
Q Consensus 75 ~~VIvD~~n~~-k~~R~~l~~~ak~~~~~~~vI~l~ 109 (303)
.+||+|...++ ...-.++...++..+..+.+.-++
T Consensus 80 dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 80 DCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 68999997665 333445555656677755554444
No 220
>PRK12377 putative replication protein; Provisional
Probab=97.44 E-value=0.00067 Score=60.52 Aligned_cols=83 Identities=17% Similarity=0.270 Sum_probs=48.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL 82 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~ 82 (303)
-++|.|.||+|||++|.+|+..+... +..++++....+...-...|.+...+ ..+.+.+.+-.++|+|..
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~~l~~~l~~~~~~~~~~--------~~~l~~l~~~dLLiIDDl 172 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVPDVMSRLHESYDNGQSG--------EKFLQELCKVDLLVLDEI 172 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHHHHHHHHHHHHhccchH--------HHHHHHhcCCCEEEEcCC
Confidence 47999999999999999999998754 34555544221110001112211111 123345567899999998
Q ss_pred CCc---hHHHHHHHHH
Q 047717 83 NSI---KGYRYELWCL 95 (303)
Q Consensus 83 n~~---k~~R~~l~~~ 95 (303)
... +.....++.+
T Consensus 173 g~~~~s~~~~~~l~~i 188 (248)
T PRK12377 173 GIQRETKNEQVVLNQI 188 (248)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 543 3334455554
No 221
>PLN02840 tRNA dimethylallyltransferase
Probab=97.44 E-value=0.00029 Score=67.08 Aligned_cols=27 Identities=41% Similarity=0.480 Sum_probs=24.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
++|+|+|++||||||+|..|++.++..
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~ 48 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGE 48 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCC
Confidence 589999999999999999999999754
No 222
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.40 E-value=0.00081 Score=63.02 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=22.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
-.++-|+||+||||+|+.|+..++..
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~ 75 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAA 75 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCc
Confidence 35789999999999999999988653
No 223
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.40 E-value=0.0011 Score=56.97 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=28.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.+|+|.|++|+||||.+.+|+.++... +..+-++.-+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D 38 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISAD 38 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEES
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCC
Confidence 479999999999999999999999765 5555555433
No 224
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.39 E-value=0.0019 Score=56.17 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=27.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
++.|+|.|||||||+|.+++...... +..+++++-
T Consensus 21 i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~ 55 (218)
T cd01394 21 VTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDT 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEC
Confidence 78999999999999999999877443 345666653
No 225
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.0019 Score=61.14 Aligned_cols=106 Identities=18% Similarity=0.240 Sum_probs=59.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC------------CccccCCCchhhHHHHHHHHHHHHHh
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL------------DRNQSYASMPAEKNLRGVLRSEVDRS 70 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~------------~~~~~y~~~~~e~~~r~~l~~~v~~~ 70 (303)
+|+++|+-||||||.|..||.+|... +..+.++.-+.+.. ..-.+|.......... ..+.+++++
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~--~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~-Iak~al~~a 178 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKK--GKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVE-IAKAALEKA 178 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHc--CCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHH-HHHHHHHHH
Confidence 79999999999999999999999874 55665555332210 0112444321111111 233344444
Q ss_pred cC-CCCEEEEcCCCC---chHHHHHHHHHHHHcCCcEEEEEEecC
Q 047717 71 VS-KDNIIIVDSLNS---IKGYRYELWCLARAAGIRYCVLYCDLE 111 (303)
Q Consensus 71 L~-~~~~VIvD~~n~---~k~~R~~l~~~ak~~~~~~~vI~l~~~ 111 (303)
-. ..++||||..-. -...-.|+..+.+.....-.+..+|+.
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam 223 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAM 223 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 33 348999997543 234455666654444433334445654
No 226
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.39 E-value=0.00012 Score=57.38 Aligned_cols=37 Identities=38% Similarity=0.495 Sum_probs=28.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
..++|.|+|||||||+++.|+..+.... ..++.++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~ 39 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGE 39 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCE
Confidence 4689999999999999999999887642 245555543
No 227
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.38 E-value=0.0039 Score=54.28 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.|+|+|.||+||||+|+.++.....
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988754
No 228
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.35 E-value=0.0054 Score=59.41 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=26.2
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
++|.|+||+|||++++.++..+... +..+++++
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~ 176 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR 176 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee
Confidence 6899999999999999999987643 34555554
No 229
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.35 E-value=0.00016 Score=67.56 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=24.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.+++|.|+|||||||+|+.|+..++.
T Consensus 79 ~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 79 QILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47899999999999999999999975
No 230
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.32 E-value=0.0061 Score=59.00 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=27.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
++|.|+||+|||++++.++.++...+.+..+++++
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 79999999999999999999876543344566554
No 231
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.31 E-value=0.00045 Score=56.17 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=25.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESE 29 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~ 29 (303)
|+|.++|+.+|||||+++.|..++...+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 7899999999999999999999998664
No 232
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.30 E-value=0.00044 Score=62.51 Aligned_cols=94 Identities=15% Similarity=0.205 Sum_probs=54.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC-ccCCCccccCCCchh---hHHH---HHHHHHHHHHhcCCCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA-SFHLDRNQSYASMPA---EKNL---RGVLRSEVDRSVSKDN 75 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~-~~~~~~~~~y~~~~~---e~~~---r~~l~~~v~~~L~~~~ 75 (303)
||+++|+.||||||-...+.++++... ...++.+.|. .+ .|.+... .+.+ ...+..+++.+|+.+.
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~~~-~~HIlTIEDPIE~------vh~skkslI~QREvG~dT~sF~~aLraALReDP 199 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINKHK-AKHILTIEDPIEY------VHESKKSLINQREVGRDTLSFANALRAALREDP 199 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhccC-CcceEEecCchHh------hhcchHhhhhHHHhcccHHHHHHHHHHHhhcCC
Confidence 899999999999999999999998752 2233334432 11 1111111 1110 1255667778888888
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCCcEEEE
Q 047717 76 IIIVDSLNSIKGYRYELWCLARAAGIRYCVL 106 (303)
Q Consensus 76 ~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI 106 (303)
.||+=|-..-. +-+..+..++.+.+.|+
T Consensus 200 DVIlvGEmRD~---ETi~~ALtAAETGHLV~ 227 (353)
T COG2805 200 DVILVGEMRDL---ETIRLALTAAETGHLVF 227 (353)
T ss_pred CEEEEeccccH---HHHHHHHHHHhcCCEEE
Confidence 88887733221 22233334445555444
No 233
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.29 E-value=0.0023 Score=56.08 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=27.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
-++|.|.+|+|||.+.++++.++.....+..+++++
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 368999999999999999998876543455566654
No 234
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.29 E-value=0.002 Score=62.95 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
=|+|.|+||+|||.+|+.++..++..
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 38899999999999999999998653
No 235
>PRK05973 replicative DNA helicase; Provisional
Probab=97.29 E-value=0.0013 Score=58.24 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=26.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+++|.|.||+|||++|-+++...-.. +..+++++
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfS 99 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFT 99 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEE
Confidence 78999999999999999988765332 44565554
No 236
>PHA03134 thymidine kinase; Provisional
Probab=97.28 E-value=0.0067 Score=56.03 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=33.3
Q ss_pred EEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717 103 YCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK 144 (303)
Q Consensus 103 ~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~ 144 (303)
..+|+++.+.+++.+|+.+|++.++ ..+.+.+..+...|..
T Consensus 165 ~niVl~~l~~~e~~~Rl~~R~R~gE-~id~~yL~~l~n~Y~~ 205 (340)
T PHA03134 165 GNLVVTTLNPDEHLRRLRARARIGE-QIDAKLIAALRNVYAM 205 (340)
T ss_pred CeEEEEeCCHHHHHHHHHHcCCCcc-ccCHHHHHHHHHHHHH
Confidence 5789999999999999999999765 4777777777666553
No 237
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.28 E-value=0.0031 Score=61.93 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
++|.|+||+|||++|+.|+..++.
T Consensus 91 iLL~GppGtGKT~la~alA~~~~~ 114 (495)
T TIGR01241 91 VLLVGPPGTGKTLLAKAVAGEAGV 114 (495)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 789999999999999999988754
No 238
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.28 E-value=0.0041 Score=59.44 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=27.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
-++|.|.||+|||++++.++..+.....+..+++++
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 478999999999999999999886543234555544
No 239
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.28 E-value=0.00017 Score=59.88 Aligned_cols=21 Identities=48% Similarity=0.667 Sum_probs=18.3
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 047717 4 IVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~ 24 (303)
|+|+|.||+||||+++.|+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 899999999999999999988
No 240
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.27 E-value=0.0091 Score=54.70 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=23.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|-++|+|+||+||||+++.+++.+..
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45799999999999999999998754
No 241
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.27 E-value=0.0025 Score=61.83 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=28.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
-++|.|+||+|||++++.++..+...+.+..+++++
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 478999999999999999999886543344555544
No 242
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.27 E-value=0.0024 Score=61.39 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=28.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
+|+++|+|||||||.|..|+.++... .+..+.+++-+
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~-~g~kV~lV~~D 137 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKK-QGKKVLLVACD 137 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh-CCCeEEEEecc
Confidence 79999999999999999999987421 14556666544
No 243
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.26 E-value=0.00025 Score=62.96 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=22.9
Q ss_pred EEccCCCCHHHHHHHHHHHHccccCCccEEEe
Q 047717 6 ICGQPSSGKSLAATCLAEALKESEAKETVRII 37 (303)
Q Consensus 6 l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~ 37 (303)
+.|+|||||||+++.+.+.+...+ .++.++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~v 30 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIV 30 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEE
Confidence 589999999999999999997753 444443
No 244
>PRK10867 signal recognition particle protein; Provisional
Probab=97.26 E-value=0.0024 Score=61.48 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=29.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
+|+++|++||||||.+..|+.++... .+..|.+++-+
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~-~G~kV~lV~~D 138 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKK-KKKKVLLVAAD 138 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh-cCCcEEEEEcc
Confidence 79999999999999999999988654 13456665544
No 245
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.26 E-value=0.0013 Score=56.59 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=28.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
-++++|+.||||||++..+.++....+....++.+|
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLD 40 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLD 40 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecC
Confidence 478999999999999999999887654344444444
No 246
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.00047 Score=60.47 Aligned_cols=112 Identities=15% Similarity=0.099 Sum_probs=63.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC----ccCCCccccCCCc---hhhHHHHHHHHHHHHHhcC---C
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA----SFHLDRNQSYASM---PAEKNLRGVLRSEVDRSVS---K 73 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~----~~~~~~~~~y~~~---~~e~~~r~~l~~~v~~~L~---~ 73 (303)
.++.|.|||||+|+|..|++.+...++...-++.+.. .++.. ...+-+. -.+.. +...+...|. .
T Consensus 18 ~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~-~~~~~~~g~lvpDei----v~~~l~~~l~~~~~ 92 (235)
T KOG3078|consen 18 AVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKE-AKEAIDKGKLVPDEV----VVRLLEKRLENPRC 92 (235)
T ss_pred EEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHH-HHHHHHhcCcCcHHH----HHHHHHhhcccccc
Confidence 6899999999999999999999865322111111100 00000 0000000 00111 1112333333 3
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhh
Q 047717 74 DNIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 74 ~~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
...+|+|+....-.+-.++ +..+ ....+|.+.+|.+.+.+|+..|.-
T Consensus 93 ~~~~ildg~Prt~~qa~~l----~~~~~~~d~Vi~l~vp~~~L~~ri~~r~i 140 (235)
T KOG3078|consen 93 QKGFILDGFPRTVQQAEEL----LDRIAQIDLVINLKVPEEVLVDRITGRRI 140 (235)
T ss_pred ccccccCCCCcchHHHHHH----HHccCCcceEEEecCCHHHHHHHHhcccc
Confidence 4789999977665544332 3322 346699999999999999998854
No 247
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=97.24 E-value=0.00039 Score=62.92 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=27.4
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESE 29 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~ 29 (303)
|++|.|+|.+||||||++..|...|...+
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999998764
No 248
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.23 E-value=0.00026 Score=61.78 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=22.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
+-+++.|+||.||||+|+.|++.++..
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~ 77 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVN 77 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--
T ss_pred ceEEEECCCccchhHHHHHHHhccCCC
Confidence 458999999999999999999998753
No 249
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.23 E-value=0.0052 Score=56.52 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
+++++|+||+||||+|+.+++.++
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhC
Confidence 567799999999999999998874
No 250
>PF13245 AAA_19: Part of AAA domain
Probab=97.23 E-value=0.00033 Score=50.79 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=17.3
Q ss_pred EEEEEEccCCCCHHHHH-HHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAA-TCLAEAL 25 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA-~~La~~l 25 (303)
++.+|.|+||||||+.+ +.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46788999999999554 4444444
No 251
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=97.20 E-value=0.00098 Score=54.99 Aligned_cols=106 Identities=23% Similarity=0.330 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCC-----cEEEEEEecCHHH-HHHHHHHhhhcCCCCC
Q 047717 57 KNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGI-----RYCVLYCDLEEDH-CRKWNKERHEKGEAAY 130 (303)
Q Consensus 57 ~~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-----~~~vI~l~~~~e~-~~~R~~~R~~~~~~~~ 130 (303)
..+|..+.. ..+.+.....||+|| +..|+ ..+.||+++++++ +.+|..+....+....
T Consensus 46 ~~VR~~l~~-~Qr~~a~~~~vV~eG---------------RDigTvVfPdA~~KifLtAs~e~RA~RR~~e~~~~g~~~~ 109 (157)
T PF02224_consen 46 PEVREALVE-IQREIAKKGGVVMEG---------------RDIGTVVFPDADLKIFLTASPEVRARRRYKELQEKGKKVS 109 (157)
T ss_dssp HHHHHHHHH-HHHHHHTTSCEEEEE---------------SSCCCCCCTT-SEEEEEE--HHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHH-HHHHHHHcCCeEEec---------------CCCceEEcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCC
Confidence 456655653 344455577899999 34444 2368999999998 6677776655432223
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717 131 DDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTK 181 (303)
Q Consensus 131 ~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~ 181 (303)
-++++.++..|.+. +++|-.+||.....+ ..++++...++++++.|++
T Consensus 110 ~e~v~~~i~~RD~~--D~~R~~aPL~~a~DA-i~IDts~lti~evv~~il~ 157 (157)
T PF02224_consen 110 YEEVLEDIKERDER--DSNREVAPLKKAEDA-IVIDTSNLTIEEVVEKILE 157 (157)
T ss_dssp HHHHHHHHHHHHHH--HHCTSSS-SS--TTS-EEEETTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHhhChh--hccCccCCCccCCCe-EEEECCCCCHHHHHHHHhC
Confidence 36889999999886 578888898766554 5566778889999988864
No 252
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.20 E-value=0.0042 Score=60.56 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=23.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|+|+||+||||+|+.+++.+..
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4799999999999999999999875
No 253
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.20 E-value=0.0047 Score=58.05 Aligned_cols=110 Identities=20% Similarity=0.173 Sum_probs=64.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC----ccCCCc--------------------cccC----CCc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA----SFHLDR--------------------NQSY----ASM 53 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~----~~~~~~--------------------~~~y----~~~ 53 (303)
+.++++|+-.|||||++..|+.++...+ .++.++|.+ ++.... ...| ...
T Consensus 74 ~~vmvvG~vDSGKSTLt~~LaN~~l~rG--~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~isP~ 151 (398)
T COG1341 74 GVVMVVGPVDSGKSTLTTYLANKLLARG--RKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSISPQ 151 (398)
T ss_pred cEEEEECCcCcCHHHHHHHHHHHHhhcC--ceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEeccCCC
Confidence 5799999999999999999999998753 345555532 111000 0001 111
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHH-HcCCcEEEEEEecCHH
Q 047717 54 PAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLAR-AAGIRYCVLYCDLEED 113 (303)
Q Consensus 54 ~~e~~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak-~~~~~~~vI~l~~~~e 113 (303)
..+..+-......+..+.+...++|+|.+-.++|++-.-+..++ ..--|..+|+++...+
T Consensus 152 ~~~~~~i~~v~rL~~~a~~~~~~ilIdT~GWi~G~~g~elk~~li~~ikP~~Ii~l~~~~~ 212 (398)
T COG1341 152 GFPGRYIAGVARLVDLAKKEADFILIDTDGWIKGWGGLELKRALIDAIKPDLIIALERANE 212 (398)
T ss_pred CChHHHHHHHHHHHHHhhccCCEEEEcCCCceeCchHHHHHHHHHhhcCCCEEEEeccccc
Confidence 12222222333355555556688999999999995443333332 2233567888865443
No 254
>PRK06526 transposase; Provisional
Probab=97.19 E-value=0.0011 Score=59.35 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=53.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL 82 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~ 82 (303)
-++|+|+||+|||++|..|+..+-.. +..+.+.....+.-.-...+. .+.+...+. .+.+-.++|+|..
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~--g~~v~f~t~~~l~~~l~~~~~--------~~~~~~~l~-~l~~~dlLIIDD~ 168 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQA--GHRVLFATAAQWVARLAAAHH--------AGRLQAELV-KLGRYPLLIVDEV 168 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHC--CCchhhhhHHHHHHHHHHHHh--------cCcHHHHHH-HhccCCEEEEccc
Confidence 47999999999999999998776443 334433221111000000000 001111222 2345578999998
Q ss_pred CCc---hHHHHHHHHHHH-HcCCcEEEEEEecCHHHHHH
Q 047717 83 NSI---KGYRYELWCLAR-AAGIRYCVLYCDLEEDHCRK 117 (303)
Q Consensus 83 n~~---k~~R~~l~~~ak-~~~~~~~vI~l~~~~e~~~~ 117 (303)
.+. +.....++.+.. .+.....+|-...+.+...+
T Consensus 169 g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~ 207 (254)
T PRK06526 169 GYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGE 207 (254)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHH
Confidence 765 334445666442 22222334445556555443
No 255
>PRK08116 hypothetical protein; Validated
Probab=97.19 E-value=0.0018 Score=58.47 Aligned_cols=33 Identities=27% Similarity=0.546 Sum_probs=26.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
++|.|.||+|||++|..++.++... +..+++++
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~ 149 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN 149 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 7899999999999999999998654 34555554
No 256
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.17 E-value=0.0027 Score=62.24 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=22.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|+|.|+||+|||++|+.++..+..
T Consensus 219 ILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 219 VLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred eEEECCCCCcHHHHHHHHHHhhcc
Confidence 789999999999999999998864
No 257
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.16 E-value=0.00051 Score=58.05 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~ 23 (303)
|+++|+|+.||||||+.+.|.+
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~ 22 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK 22 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 8999999999999999999987
No 258
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0052 Score=57.99 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=26.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
+|+|+|++|+||||++..|+..+-...-...+.++..+
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D 176 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTD 176 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence 68999999999999999999876322101345454433
No 259
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0048 Score=59.92 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.++|+|+||+||||+|+.|++.++..
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 58999999999999999999999763
No 260
>PRK13695 putative NTPase; Provisional
Probab=97.15 E-value=0.0065 Score=50.93 Aligned_cols=24 Identities=42% Similarity=0.488 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
.|+|+|.|||||||+++.+...+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999887764
No 261
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.15 E-value=0.00054 Score=60.91 Aligned_cols=38 Identities=32% Similarity=0.453 Sum_probs=28.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
.+|-|+|+||+||||+...|..++...+....|+.+|.
T Consensus 30 ~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDP 67 (266)
T PF03308_consen 30 HVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDP 67 (266)
T ss_dssp EEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-G
T ss_pred eEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECC
Confidence 47899999999999999999999987654455666664
No 262
>PHA03135 thymidine kinase; Provisional
Probab=97.14 E-value=0.0079 Score=55.63 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=27.2
Q ss_pred EEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhc
Q 047717 103 YCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFE 143 (303)
Q Consensus 103 ~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E 143 (303)
..+|+...+.+++.+|+.+|++.++ ..+.+.+..+...|.
T Consensus 161 niVl~~L~~~~E~~rRl~~R~R~gE-~~d~~yL~aL~n~Y~ 200 (343)
T PHA03135 161 NLVITILPDEKEHVNRLSSRNRPGE-TTDRNMLRALNAVYS 200 (343)
T ss_pred eEEEEECCCHHHHHHHHHHcCCCcc-ccCHHHHHHHHHHHH
Confidence 4445444468899999999998764 456666666655543
No 263
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.14 E-value=0.0004 Score=55.89 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=22.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|+|.|+||+|||++++.|++.++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~ 25 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR 25 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999999964
No 264
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.12 E-value=0.00054 Score=63.61 Aligned_cols=38 Identities=34% Similarity=0.320 Sum_probs=29.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
.+|.|+|+|||||||++..|...+...+....++.+|.
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 37999999999999999999999976543333444443
No 265
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.12 E-value=0.0049 Score=57.42 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=27.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
.|+|+|.+||||||+.+.|..++... ..++.++|
T Consensus 162 nili~G~tgSGKTTll~aL~~~ip~~---~ri~tiEd 195 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPAI---ERLITVED 195 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhhCCCC---CeEEEecC
Confidence 58999999999999999999888642 34555544
No 266
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.12 E-value=0.0041 Score=52.88 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|+|++||||||+.+.|...+..
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCC
Confidence 6899999999999999999887753
No 267
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.12 E-value=0.0052 Score=61.33 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=27.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
++|.|.+|+|||.|++.++.++.....+..+++++
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 78999999999999999999875432244555554
No 268
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.11 E-value=0.0036 Score=52.61 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.9
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
++-|+|.|.+|+||||+.+.|...
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 357999999999999999998754
No 269
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.11 E-value=0.00058 Score=60.12 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=26.9
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESE 29 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~ 29 (303)
|++|.|+|.+||||||++..|+.+|...+
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G 29 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERG 29 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999997653
No 270
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.11 E-value=0.0099 Score=58.42 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=24.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.++|+|+||+||||+|+.+++.+++.
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 58999999999999999999999764
No 271
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.10 E-value=0.00086 Score=58.67 Aligned_cols=26 Identities=38% Similarity=0.727 Sum_probs=24.1
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
||-++|+|+||.||||-+..|+..|-
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CCceEeeCCCCCchhhHHHHHHHHHh
Confidence 89999999999999999999998773
No 272
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.007 Score=59.54 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=23.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|+|+||+||||+|+.+++.+.+
T Consensus 38 a~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhc
Confidence 5799999999999999999999875
No 273
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.09 E-value=0.0004 Score=65.85 Aligned_cols=25 Identities=44% Similarity=0.598 Sum_probs=23.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|++.|+||+||||+|++||+.+...
T Consensus 266 ILIAG~PGaGKsTFaqAlAefy~~~ 290 (604)
T COG1855 266 ILIAGAPGAGKSTFAQALAEFYASQ 290 (604)
T ss_pred eEEecCCCCChhHHHHHHHHHHHhc
Confidence 7999999999999999999999875
No 274
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.09 E-value=0.00049 Score=55.38 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=24.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
+|+|.|..||||||+++.+++.++..
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 79999999999999999999998753
No 275
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.09 E-value=0.0009 Score=55.62 Aligned_cols=30 Identities=30% Similarity=0.344 Sum_probs=27.7
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccC
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEA 30 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~ 30 (303)
||++-++|+.+|||||+...|...|...++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~ 31 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGY 31 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCc
Confidence 789999999999999999999999988753
No 276
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0007 Score=67.55 Aligned_cols=68 Identities=18% Similarity=0.368 Sum_probs=44.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec-----CC-ccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID-----EA-SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDN 75 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~-----~~-~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~ 75 (303)
|+++|.||||.|||++++.+|+.++..+ +.++ |+ ... .++.-|-.+...+.++ .++++=..+.
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~Rkf-----vR~sLGGvrDEAEIR-GHRRTYIGamPGrIiQ-----~mkka~~~NP 419 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKF-----VRISLGGVRDEAEIR-GHRRTYIGAMPGKIIQ-----GMKKAGVKNP 419 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCE-----EEEecCccccHHHhc-cccccccccCChHHHH-----HHHHhCCcCC
Confidence 7999999999999999999999998753 3322 11 111 1122455555455444 3444445677
Q ss_pred EEEEc
Q 047717 76 IIIVD 80 (303)
Q Consensus 76 ~VIvD 80 (303)
++++|
T Consensus 420 v~LLD 424 (782)
T COG0466 420 VFLLD 424 (782)
T ss_pred eEEee
Confidence 77777
No 277
>PLN02796 D-glycerate 3-kinase
Probab=97.07 E-value=0.00075 Score=62.71 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
+|.|+|.+||||||+++.|...+...
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~~~ 127 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFNAT 127 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhccc
Confidence 68999999999999999999988653
No 278
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.0019 Score=61.65 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=28.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS 41 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~ 41 (303)
+|+|+|++||||||++..|+..+... .+..+.+++-+.
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~-~G~~V~Lit~Dt 262 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLH-MGKSVSLYTTDN 262 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEecccc
Confidence 68999999999999999999865321 144566665443
No 279
>PRK13764 ATPase; Provisional
Probab=97.05 E-value=0.0079 Score=60.08 Aligned_cols=35 Identities=34% Similarity=0.493 Sum_probs=27.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
.|+++|+|||||||+++.|+.++... +..+..+.+
T Consensus 259 ~ILIsG~TGSGKTTll~AL~~~i~~~--~riV~TiED 293 (602)
T PRK13764 259 GILIAGAPGAGKSTFAQALAEFYADM--GKIVKTMES 293 (602)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhC--CCEEEEECC
Confidence 58999999999999999999998753 333434443
No 280
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.02 E-value=0.00091 Score=49.40 Aligned_cols=34 Identities=38% Similarity=0.527 Sum_probs=28.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+|+++|.+|+||||++..|+..+... +..+..++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~--g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKR--GKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEC
Confidence 47899999999999999999999764 55666666
No 281
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.02 E-value=0.012 Score=57.57 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
-++|+|+||+||||+|+.+++.+++.
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCc
Confidence 48999999999999999999998753
No 282
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.02 E-value=0.00058 Score=57.29 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.2
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|+|+|.||+||||+.+.+.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 799999999999999999999943
No 283
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.02 E-value=0.00052 Score=53.04 Aligned_cols=25 Identities=44% Similarity=0.490 Sum_probs=22.5
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|+|.|.||+|||++|+.|++.+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999888653
No 284
>PRK09183 transposase/IS protein; Provisional
Probab=97.01 E-value=0.0032 Score=56.57 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=25.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
.++|.|+||+|||++|..|+...... +..+.+++
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~--G~~v~~~~ 137 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRA--GIKVRFTT 137 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 47899999999999999998765433 34555544
No 285
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0037 Score=61.49 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=23.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|+|-|+||+|||.+|++|+.+++..
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~vP 250 (802)
T KOG0733|consen 226 VLLHGPPGCGKTSLANAIAGELGVP 250 (802)
T ss_pred eeeeCCCCccHHHHHHHHhhhcCCc
Confidence 7899999999999999999998764
No 286
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.99 E-value=0.0029 Score=58.07 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=27.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
.|+|+|.+||||||+++.|...+.....+..++.+++
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd 170 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIED 170 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECC
Confidence 5889999999999999999988754211234555554
No 287
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.99 E-value=0.0064 Score=62.62 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|+|.|+||+|||++|+.|+..++.
T Consensus 490 iLL~GppGtGKT~lakalA~e~~~ 513 (733)
T TIGR01243 490 VLLFGPPGTGKTLLAKAVATESGA 513 (733)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC
Confidence 789999999999999999988764
No 288
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.99 E-value=0.0087 Score=55.43 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=26.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
.|+|+|.+||||||+.+.|...+........++.+++
T Consensus 150 ~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd 186 (319)
T PRK13894 150 NILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIED 186 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcC
Confidence 5899999999999999999987532111234555554
No 289
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0056 Score=60.66 Aligned_cols=135 Identities=19% Similarity=0.216 Sum_probs=67.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCC-----------------------------ccEEEecCC-ccCCCccccCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAK-----------------------------ETVRIIDEA-SFHLDRNQSYA 51 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~-----------------------------~~v~~~~~~-~~~~~~~~~y~ 51 (303)
.=|++.|+||+||||+|+.|+..-+...+. ..++++|+. .+...+.+ -.
T Consensus 469 kGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g-~~ 547 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGG-SS 547 (693)
T ss_pred ceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCC-Cc
Confidence 358999999999999999999887653210 111222221 11111110 00
Q ss_pred CchhhHHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCC
Q 047717 52 SMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYD 131 (303)
Q Consensus 52 ~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~ 131 (303)
....++.+. .+...+.-.....+++|+-++|.-.. +..+.-.-|--..+||+..|....+..+.+-..+. -+++
T Consensus 548 ~~v~~RVls-qLLtEmDG~e~~k~V~ViAATNRpd~----ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk-mp~~ 621 (693)
T KOG0730|consen 548 SGVTDRVLS-QLLTEMDGLEALKNVLVIAATNRPDM----IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK-MPFS 621 (693)
T ss_pred cchHHHHHH-HHHHHcccccccCcEEEEeccCChhh----cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc-CCCC
Confidence 011111111 11112222223568899999984321 22122222445669999999888776665432211 2333
Q ss_pred HH-HHHHHHHHhc
Q 047717 132 DK-IFEDLVRRFE 143 (303)
Q Consensus 132 ~e-~~~~l~~r~E 143 (303)
++ .++.++++-|
T Consensus 622 ~~vdl~~La~~T~ 634 (693)
T KOG0730|consen 622 EDVDLEELAQATE 634 (693)
T ss_pred ccccHHHHHHHhc
Confidence 33 4556665543
No 290
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.98 E-value=0.011 Score=55.68 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=23.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|+|+||+||||+|+.+++.+..
T Consensus 40 ~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhcC
Confidence 5789999999999999999999864
No 291
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.97 E-value=0.00083 Score=60.70 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=31.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
.+|-|+|.||+||||+...|..+|...+....|+.+|.
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDP 89 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDP 89 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECC
Confidence 37899999999999999999999977654455666664
No 292
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.97 E-value=0.029 Score=56.08 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=23.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|+|++|+||||+|+.|++.+.+
T Consensus 37 a~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 37 AYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4789999999999999999999875
No 293
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.96 E-value=0.0062 Score=56.32 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=28.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.++.|.|+|||||||+|-+++...... +..++++|-+
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E 92 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAE 92 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEccc
Confidence 378999999999999999987766443 4556666643
No 294
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.026 Score=53.86 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
-++|+|+||+||||+|+.+++.+.+.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 37899999999999999999999763
No 295
>PRK08181 transposase; Validated
Probab=96.96 E-value=0.0031 Score=56.93 Aligned_cols=121 Identities=18% Similarity=0.166 Sum_probs=61.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL 82 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~ 82 (303)
-++|+|+||+|||.+|..|+..+-.. +..|.+++-..+--.-...+.+ . .+. ...+.+.+-.++|+|..
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~~~L~~~l~~a~~~----~----~~~-~~l~~l~~~dLLIIDDl 176 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRTTDLVQKLQVARRE----L----QLE-SAIAKLDKFDLLILDDL 176 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeHHHHHHHHHHHHhC----C----cHH-HHHHHHhcCCEEEEecc
Confidence 37999999999999999999877543 4455554421110000000000 0 111 11223455689999987
Q ss_pred CCch---HHHHHHHHHHHH-cCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q 047717 83 NSIK---GYRYELWCLARA-AGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVR 140 (303)
Q Consensus 83 n~~k---~~R~~l~~~ak~-~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~ 140 (303)
.+.. .....++.+... ++....+|--..+++....... +......+++++..
T Consensus 177 g~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~~------D~~~a~aildRL~h 232 (269)
T PRK08181 177 AYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFP------DPAMTLAAVDRLVH 232 (269)
T ss_pred ccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhcC------CccchhhHHHhhhc
Confidence 6543 334455554332 2222233334455555443331 12234556666654
No 296
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.96 E-value=0.00065 Score=61.03 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-++|.|+||+||||+|+.+++.+..
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999998753
No 297
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.96 E-value=0.003 Score=57.52 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=28.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
+|+|+|++||||||++..|+.++....-+..|.+++-+
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 78999999999999999999988543112456666543
No 298
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.94 E-value=0.0016 Score=53.01 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.9
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
|..++|+|.||+||||+.++|++.
T Consensus 9 ~~~fIltGgpGaGKTtLL~aLa~~ 32 (183)
T COG3911 9 HKRFILTGGPGAGKTTLLAALARA 32 (183)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHc
Confidence 568999999999999999999875
No 299
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.0067 Score=56.68 Aligned_cols=112 Identities=23% Similarity=0.198 Sum_probs=63.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC----------CccccCCCchhhHHHHHHHHHHHHHhc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL----------DRNQSYASMPAEKNLRGVLRSEVDRSV 71 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~----------~~~~~y~~~~~e~~~r~~l~~~v~~~L 71 (303)
.+|.+.|+-||||||.+..||-++...++..-.+.-|....+. .+-.+|... .+...-......+++.-
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsy-te~dpv~ia~egv~~fK 180 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSY-TEADPVKIASEGVDRFK 180 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecc-cccchHHHHHHHHHHHH
Confidence 3899999999999999999999998875433333323221110 001123211 11111112223444443
Q ss_pred CC-CCEEEEcCCCCch---HHHHHHHHHHHHcCCcEEEEEEecCHHH
Q 047717 72 SK-DNIIIVDSLNSIK---GYRYELWCLARAAGIRYCVLYCDLEEDH 114 (303)
Q Consensus 72 ~~-~~~VIvD~~n~~k---~~R~~l~~~ak~~~~~~~vI~l~~~~e~ 114 (303)
.. -++||||..-..+ +.-.|+..++++......+..+|++.-.
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ 227 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ 227 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH
Confidence 33 3688899765433 3455666677777766666667887543
No 300
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.92 E-value=0.0019 Score=61.47 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
-|+|.|+||+||||+|+.|++.++..
T Consensus 52 ~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 52 NILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 58999999999999999999998654
No 301
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.92 E-value=0.0012 Score=54.62 Aligned_cols=33 Identities=33% Similarity=0.391 Sum_probs=26.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEe
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRII 37 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~ 37 (303)
+|.|+|++||||||++..|...+... +..+..+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~--G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR--GYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEE
Confidence 47899999999999999999998765 3444443
No 302
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.92 E-value=0.013 Score=58.99 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.++|+|+||+||||+|+.|++.+++.
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 57999999999999999999999763
No 303
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.92 E-value=0.0014 Score=55.47 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=25.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
++|.|.||+|||.+|..++.++-.. +..+.++.
T Consensus 50 l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~ 82 (178)
T PF01695_consen 50 LILYGPPGTGKTHLAVAIANEAIRK--GYSVLFIT 82 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEE
T ss_pred EEEEhhHhHHHHHHHHHHHHHhccC--CcceeEee
Confidence 7899999999999999999877554 45666654
No 304
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.92 E-value=0.012 Score=51.85 Aligned_cols=35 Identities=31% Similarity=0.468 Sum_probs=27.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+++|+|.||+|||+++.+++..+-.. .+..+.+++
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s 49 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFS 49 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEe
Confidence 79999999999999999998766432 144566655
No 305
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.92 E-value=0.0012 Score=62.71 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=23.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
+|.|+|.+||||||+++.|...+...
T Consensus 214 IIGIsG~qGSGKSTLa~~L~~lL~~~ 239 (460)
T PLN03046 214 VIGFSAPQGCGKTTLVFALDYLFRVT 239 (460)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccc
Confidence 67899999999999999998887643
No 306
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.91 E-value=0.0014 Score=61.98 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=26.8
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESE 29 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~ 29 (303)
|++|.|+|.|||||||+.+.|...|...+
T Consensus 205 ~~~~~~~g~~~~GKtt~~~~l~~~l~~~g 233 (366)
T PRK14489 205 PPLLGVVGYSGTGKTTLLEKLIPELIARG 233 (366)
T ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence 67999999999999999999999998764
No 307
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.91 E-value=0.011 Score=61.24 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.++|+|++|+||||+|+.|++.|.+.
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 37899999999999999999999763
No 308
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0075 Score=57.16 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=28.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS 41 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~ 41 (303)
.|+|+|++||||||++..|+..+... +..+.+++-+.
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~--GkkVglI~aDt 279 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDH 279 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEEecCC
Confidence 68999999999999999999888644 44555555443
No 309
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.91 E-value=0.0053 Score=55.34 Aligned_cols=35 Identities=17% Similarity=0.404 Sum_probs=27.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
+|+|+|.+||||||+.+.+...+... +..++.+++
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~--~~~iitiEd 116 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTP--EKNIITVED 116 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCC--CCeEEEECC
Confidence 79999999999999999988777542 334555554
No 310
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.89 E-value=0.012 Score=47.56 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
..|++.|.|||||||+.+.|...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998643
No 311
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.89 E-value=0.00081 Score=64.13 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=24.4
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|..|+|+|.+||||||+++.|+++++.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~ 245 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNT 245 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999999864
No 312
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.88 E-value=0.0028 Score=56.39 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=27.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
-++|.|.||+|||+++..|+.++... +..+.+++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it 134 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT 134 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE
Confidence 47999999999999999999998664 45566554
No 313
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.88 E-value=0.0012 Score=60.53 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=25.0
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|.+|.|+|+|||||||++..|...+...
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4689999999999999999999988664
No 314
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.87 E-value=0.0016 Score=51.13 Aligned_cols=35 Identities=37% Similarity=0.431 Sum_probs=28.7
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
|+++|.+|+||||++..|+..+... +.++.++|.+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~--g~~V~~id~D 36 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK--GKPVLAIDAD 36 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEECC
Confidence 7899999999999999999998654 4567666643
No 315
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.018 Score=56.56 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=28.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
+|.|+|++|+||||++..|+..+...+.+..+.+++.+
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD 389 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD 389 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc
Confidence 68999999999999999999877544323456666544
No 316
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.84 E-value=0.04 Score=55.05 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
-++++|+||+||||+|+.+++.+.+.
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 47899999999999999999999754
No 317
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.83 E-value=0.0078 Score=56.88 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=27.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
+|+|+|++||||||+.+.|.+++.....+..++.++|
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEd 187 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYED 187 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 6899999999999999999988864222234555554
No 318
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.008 Score=57.07 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=28.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccc--CCccEEEecCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESE--AKETVRIIDEA 40 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~--~~~~v~~~~~~ 40 (303)
+|++.|++|+||||.+..|+.++.... -+..|.+++-+
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D 215 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID 215 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc
Confidence 789999999999999999998876321 13456555543
No 319
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.83 E-value=0.015 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|.||||||++|.+++...
T Consensus 21 v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 21 ITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred EEEEeCCCCCChhHHHHHHHHHh
Confidence 78999999999999999998765
No 320
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.82 E-value=0.0088 Score=56.55 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=27.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+++|.|.||+||||++.+++..+... +..+++++
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs 117 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVS 117 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEE
Confidence 78999999999999999999877543 24565554
No 321
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.80 E-value=0.005 Score=57.60 Aligned_cols=36 Identities=22% Similarity=0.450 Sum_probs=27.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
+|+|+|++||||||+.+.|...+.... +..++.+.+
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~-~~~i~tiEd 159 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNA-AGHIITIED 159 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCC-CCEEEEEcC
Confidence 799999999999999999988776421 234445443
No 322
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.80 E-value=0.0044 Score=59.47 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=22.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+-++|.|+||+||||+|+.|++.++.
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~ 62 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDA 62 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45788999999999999999998754
No 323
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.80 E-value=0.0012 Score=52.20 Aligned_cols=25 Identities=40% Similarity=0.627 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+++|.|.||+|||++++.+++.+..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 6899999999999999999998753
No 324
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.80 E-value=0.023 Score=55.12 Aligned_cols=113 Identities=9% Similarity=0.162 Sum_probs=61.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCCC
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLN 83 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~n 83 (303)
++|.|.+|+|||++++.++.++.....+..+++++.+.+.. .+....... ...+. .+.+.+..-.++|+|...
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~----~~~~~l~~~--~~~~~-~~~~~~~~~dvLiIDDiq 216 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR----KAVDILQKT--HKEIE-QFKNEICQNDVLIIDDVQ 216 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH----HHHHHHHHh--hhHHH-HHHHHhccCCEEEEeccc
Confidence 68999999999999999999876533345566555322210 000000000 00111 233344566799999986
Q ss_pred Cch---HHHHHHHHHHH---HcCCcEEEEEEecCHHHH---HHHHHHhhh
Q 047717 84 SIK---GYRYELWCLAR---AAGIRYCVLYCDLEEDHC---RKWNKERHE 124 (303)
Q Consensus 84 ~~k---~~R~~l~~~ak---~~~~~~~vI~l~~~~e~~---~~R~~~R~~ 124 (303)
... ....+++.+.. ..+. ..++-.+.+++.. .+|+..|-.
T Consensus 217 ~l~~k~~~~e~lf~l~N~~~~~~k-~iIltsd~~P~~l~~l~~rL~SR~~ 265 (450)
T PRK14087 217 FLSYKEKTNEIFFTIFNNFIENDK-QLFFSSDKSPELLNGFDNRLITRFN 265 (450)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCC-cEEEECCCCHHHHhhccHHHHHHHh
Confidence 543 23445555433 2332 2344445565543 467777754
No 325
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.80 E-value=0.016 Score=59.12 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.++|+|.+|+||||+|+.|++.+++.
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 57899999999999999999999763
No 326
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.80 E-value=0.0049 Score=55.14 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=24.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
+.|++.|..||||||+.++|-.++...
T Consensus 20 ~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 20 VIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred cEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 478999999999999999999988765
No 327
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=96.80 E-value=0.00091 Score=58.34 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
+|.|+|.|||||||+|+.+.+..
T Consensus 2 iI~i~G~~gsGKstva~~~~~~g 24 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIENY 24 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHhcC
Confidence 89999999999999999987653
No 328
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=96.79 E-value=0.002 Score=61.61 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=27.7
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccC
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEA 30 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~ 30 (303)
|++|.|+|..||||||++..|..+|...++
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~ 30 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGF 30 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCC
Confidence 899999999999999999999999987643
No 329
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.024 Score=56.20 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=23.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|+|+||+||||+|+.|++.+.+
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999875
No 330
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.78 E-value=0.0014 Score=56.71 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=24.1
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+|+|.|+|++||||||+.+.+...+..
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 578999999999999999999888653
No 331
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.77 E-value=0.0018 Score=59.90 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=29.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
+|+|+|++||||||.+..|+..+... +..|.+++.+
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~D 151 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAGD 151 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc--CCeEEEEecC
Confidence 78999999999999999999988654 4567766644
No 332
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.77 E-value=0.015 Score=60.19 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.++|+|+||+||||+|+.|++.+.+.
T Consensus 40 AyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred EEEEECCCCCCHHHHHHHHHHhccCc
Confidence 47899999999999999999999763
No 333
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.77 E-value=0.011 Score=52.19 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=24.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
.+++|.|.||||||++|.+++...-.. +..+++++
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs 56 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVA 56 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEE
Confidence 378999999999999999876543222 34555554
No 334
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.77 E-value=0.021 Score=56.33 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.++|+|+||+||||+|+.|++.+++.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 47899999999999999999999763
No 335
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.75 E-value=0.0011 Score=59.26 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.+++|+|++||||||+++.+...+..
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 37899999999999999999988763
No 336
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.75 E-value=0.0079 Score=50.13 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=46.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEEEcC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIIIVDS 81 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VIvD~ 81 (303)
+.+.++-+|+||||+|..|+..+... +..|+++|-+.-+..-...+....... .+...+.... ..-+.||+|.
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~--g~~vllvD~D~q~~~~~~~~~~~~~~~----~l~~~~~~~~~~~yD~VIiD~ 75 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKL--GYKVGLLDADIYGPSIPKMWRGPMKMG----AIKQFLTDVDWGELDYLVIDM 75 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHc--CCcEEEEeCCCCCCCchHHHhCcchHH----HHHHHHHHhhcCCCCEEEEeC
Confidence 46788999999999999999999765 678888885532211000111111111 2222233322 3457899998
Q ss_pred CCCc
Q 047717 82 LNSI 85 (303)
Q Consensus 82 ~n~~ 85 (303)
....
T Consensus 76 pp~~ 79 (169)
T cd02037 76 PPGT 79 (169)
T ss_pred CCCC
Confidence 7654
No 337
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.74 E-value=0.004 Score=59.35 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
-|+|.|+||+||||+|+.|++.++..
T Consensus 49 ~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 49 NILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 58999999999999999999998754
No 338
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.73 E-value=0.0043 Score=56.78 Aligned_cols=28 Identities=43% Similarity=0.517 Sum_probs=26.0
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|++|+|+|+.|||||-+|-.||+.++..
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~e 30 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGE 30 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCc
Confidence 5799999999999999999999999864
No 339
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.72 E-value=0.016 Score=46.93 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=18.2
Q ss_pred EEEEccCCCCHHHHHHHHH
Q 047717 4 IVICGQPSSGKSLAATCLA 22 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La 22 (303)
|+|+|.+||||||+.+.|.
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 7899999999999999998
No 340
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.72 E-value=0.031 Score=52.07 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|+|+||+||||+|+.+++.+..
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5789999999999999999999864
No 341
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.0014 Score=58.70 Aligned_cols=72 Identities=19% Similarity=0.332 Sum_probs=44.5
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCCC
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLN 83 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~n 83 (303)
+++.|.||+|||.+|.+|+..+-.. +..|.++.-..+-..-...+.+. .....+.+.+..-+++|+|...
T Consensus 108 l~l~G~~G~GKThLa~Ai~~~l~~~--g~sv~f~~~~el~~~Lk~~~~~~--------~~~~~l~~~l~~~dlLIiDDlG 177 (254)
T COG1484 108 LVLLGPPGVGKTHLAIAIGNELLKA--GISVLFITAPDLLSKLKAAFDEG--------RLEEKLLRELKKVDLLIIDDIG 177 (254)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHHHHHHHhcC--------chHHHHHHHhhcCCEEEEeccc
Confidence 7899999999999999999988743 45565554221110001112111 2223344556677899999976
Q ss_pred Cc
Q 047717 84 SI 85 (303)
Q Consensus 84 ~~ 85 (303)
+.
T Consensus 178 ~~ 179 (254)
T COG1484 178 YE 179 (254)
T ss_pred Cc
Confidence 53
No 342
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.72 E-value=0.018 Score=51.44 Aligned_cols=36 Identities=25% Similarity=0.188 Sum_probs=29.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
|++|.|.||+|||+++-+++..+.... +..|.+++-
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~-~~~vly~Sl 56 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNG-GYPVLYFSL 56 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-SSEEEEEES
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhc-CCeEEEEcC
Confidence 899999999999999999998776532 356777664
No 343
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.71 E-value=0.013 Score=60.44 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-|+|.|+||+||||+|+.|+..++.
T Consensus 214 giLL~GppGtGKT~laraia~~~~~ 238 (733)
T TIGR01243 214 GVLLYGPPGTGKTLLAKAVANEAGA 238 (733)
T ss_pred eEEEECCCCCChHHHHHHHHHHhCC
Confidence 4789999999999999999998764
No 344
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.021 Score=57.39 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=23.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|+|++|+||||+|+.|++.+.+
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4789999999999999999999986
No 345
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.70 E-value=0.0014 Score=54.85 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=21.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
++++|.|.+|+|||++.+++.+.+...
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 579999999999999999999988764
No 346
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.69 E-value=0.0026 Score=54.84 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=28.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.++.|+|+||||||++|.+++...... +..+++++-+
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e 49 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTE 49 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECC
Confidence 378999999999999999998776433 4567777643
No 347
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.021 Score=53.57 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|+|.|+||+|||-+|++++...+-
T Consensus 248 vLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 248 VLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred eeeeCCCCCcHHHHHHHHHHhhcC
Confidence 789999999999999999988753
No 348
>PRK04195 replication factor C large subunit; Provisional
Probab=96.68 E-value=0.01 Score=58.11 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+.++|.|+||+||||+|+.|++.++.
T Consensus 40 ~~lLL~GppG~GKTtla~ala~el~~ 65 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALANDYGW 65 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 36899999999999999999998864
No 349
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.67 E-value=0.018 Score=54.32 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=29.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS 41 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~ 41 (303)
.+|+|+|+.||||||++..|+..+... +..|.+++-+.
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDt 244 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDT 244 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCc
Confidence 478999999999999999999877443 35566665443
No 350
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.67 E-value=0.0057 Score=57.37 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=41.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc---CCCCEEEE
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV---SKDNIIIV 79 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L---~~~~~VIv 79 (303)
.+.|-|+||+|||.+|+.++..++.. .+.++-..+. . .|. ...|+.+|..+.. +.... .+-.++++
T Consensus 150 gllL~GPPGcGKTllAraiA~elg~~-----~i~vsa~eL~---s-k~v-GEsEk~IR~~F~~-A~~~a~~~~aPcVLFI 218 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKMGIE-----PIVMSAGELE---S-ENA-GEPGKLIRQRYRE-AADIIKKKGKMSCLFI 218 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHcCCC-----eEEEEHHHhh---c-CcC-CcHHHHHHHHHHH-HHHHhhccCCCeEEEE
Confidence 57889999999999999999998753 4555422211 0 111 1247888855543 33322 12345666
Q ss_pred cC
Q 047717 80 DS 81 (303)
Q Consensus 80 D~ 81 (303)
|.
T Consensus 219 DE 220 (413)
T PLN00020 219 ND 220 (413)
T ss_pred eh
Confidence 63
No 351
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.67 E-value=0.0021 Score=51.06 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=23.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.+|+|.|.-||||||+++.|++.++..
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 489999999999999999999999753
No 352
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.64 E-value=0.038 Score=44.91 Aligned_cols=101 Identities=14% Similarity=0.051 Sum_probs=55.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL 82 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~ 82 (303)
++.|.|+.||||||+.+.|+..+... ...+.++.. ..-.|...-+....+ .+. .+...+.+-.++|+|-+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~-----~~i~~~~~lS~G~~~-rv~-laral~~~p~illlDEP 97 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST-----VKIGYFEQLSGGEKM-RLA-LAKLLLENPNLLLLDEP 97 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe-----EEEEEEccCCHHHHH-HHH-HHHHHhcCCCEEEEeCC
Confidence 67899999999999999987765321 222333321 011121111111111 111 23334456789999976
Q ss_pred C--CchHHHHHHHHHHHHcCCcEEEEEEecCHHHH
Q 047717 83 N--SIKGYRYELWCLARAAGIRYCVLYCDLEEDHC 115 (303)
Q Consensus 83 n--~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~ 115 (303)
. .....+..+....+..+. .++++.-..+.+
T Consensus 98 ~~~LD~~~~~~l~~~l~~~~~--til~~th~~~~~ 130 (144)
T cd03221 98 TNHLDLESIEALEEALKEYPG--TVILVSHDRYFL 130 (144)
T ss_pred ccCCCHHHHHHHHHHHHHcCC--EEEEEECCHHHH
Confidence 5 345567777776666542 455555444444
No 353
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.64 E-value=0.033 Score=55.87 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=24.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+.++|+|+||+||||+|+.|++.+.+
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhccc
Confidence 56899999999999999999999975
No 354
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.63 E-value=0.0032 Score=59.50 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=24.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.+|+|+|++||||||++..|...|...
T Consensus 6 ~~i~i~G~~gsGKTTl~~~l~~~l~~~ 32 (369)
T PRK14490 6 FEIAFCGYSGSGKTTLITALVRRLSER 32 (369)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence 479999999999999999999999764
No 355
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.63 E-value=0.0017 Score=60.26 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=24.1
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+..|+|.|.|||||||+++.|+..++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~ 188 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNT 188 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 357999999999999999999998764
No 356
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.63 E-value=0.06 Score=54.06 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=23.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|+|+||+||||+|+.|++.+.+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5789999999999999999999875
No 357
>PRK04328 hypothetical protein; Provisional
Probab=96.62 E-value=0.015 Score=51.82 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=24.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+++|.|.||||||++|.+++...-.. +..+++++
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis 58 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVA 58 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEE
Confidence 78999999999999999976553222 34555554
No 358
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.62 E-value=0.0027 Score=58.79 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=26.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
.|+|+|.+||||||+.+.|...+.....+..++.+.|
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd 182 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILED 182 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecC
Confidence 5899999999999999999988742211234455553
No 359
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.62 E-value=0.0024 Score=53.81 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=25.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+++|.|.||+|||+++.+++...-.. +..+.+++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s 34 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVT 34 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEE
Confidence 37899999999999999987765332 34555554
No 360
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.61 E-value=0.0017 Score=60.06 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=23.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|+|.|+||+||||+++.|++.++..
T Consensus 67 ilL~G~pGtGKTtla~~lA~~l~~~ 91 (327)
T TIGR01650 67 VMVQGYHGTGKSTHIEQIAARLNWP 91 (327)
T ss_pred EEEEeCCCChHHHHHHHHHHHHCCC
Confidence 8999999999999999999999865
No 361
>CHL00176 ftsH cell division protein; Validated
Probab=96.61 E-value=0.03 Score=56.58 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
=|+|.|+||+|||++|+.++...+.
T Consensus 218 gVLL~GPpGTGKT~LAralA~e~~~ 242 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAGEAEV 242 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3899999999999999999987754
No 362
>CHL00181 cbbX CbbX; Provisional
Probab=96.60 E-value=0.0017 Score=59.17 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-++|.|+||+||||+|+.+++.+..
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~ 85 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYK 85 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999998754
No 363
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0024 Score=63.81 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=25.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESE 29 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~ 29 (303)
+++.+.|+||.|||++|+.+|+.|+..+
T Consensus 439 kIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 439 KILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred cEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 6899999999999999999999998753
No 364
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.60 E-value=0.016 Score=56.23 Aligned_cols=35 Identities=31% Similarity=0.397 Sum_probs=27.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
.+++|.|.||+||||++.+++..+... +..+++++
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs 129 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVS 129 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEE
Confidence 378999999999999999998776543 34565655
No 365
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=96.59 E-value=0.017 Score=51.16 Aligned_cols=104 Identities=20% Similarity=0.173 Sum_probs=59.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccC-------CCc-hhhHHHHHHHHHHHHHhcCCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSY-------ASM-PAEKNLRGVLRSEVDRSVSKD 74 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y-------~~~-~~e~~~r~~l~~~v~~~L~~~ 74 (303)
++++.|--|+||||.|..|+.++... +.+++++|.+..+..-...| .-. ..+-..+ .+...+.+....+
T Consensus 5 ~~i~~~KGGvGKSt~a~~la~~l~~~--g~~vl~iD~D~~n~~~~~~~~l~~~~~~i~~~~~i~~r-~fD~Lve~i~~~~ 81 (241)
T PRK13886 5 HMVLQGKGGVGKSFIAATIAQYKASK--GQKPLCIDTDPVNATFEGYKALNVRRLNIMDGDEINTR-NFDALVEMIASTE 81 (241)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHhC--CCCEEEEECCCCCchhhhHHhcCCcceecccCCccchh-hHHHHHHHHhccC
Confidence 34556999999999999999998765 56778877553221000011 000 0111111 3444555555445
Q ss_pred CEEEEcCCC--CchHHHH----HHHHHHHHcCCcEEEEEEe
Q 047717 75 NIIIVDSLN--SIKGYRY----ELWCLARAAGIRYCVLYCD 109 (303)
Q Consensus 75 ~~VIvD~~n--~~k~~R~----~l~~~ak~~~~~~~vI~l~ 109 (303)
..+|+|... ...-..| .+..++.+.|...++.++.
T Consensus 82 ~dvIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi 122 (241)
T PRK13886 82 GDVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVV 122 (241)
T ss_pred CCEEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEE
Confidence 557777543 2222233 5667788888887776654
No 366
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.58 E-value=0.0026 Score=52.18 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=26.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+|.++|.+||||||++..|+..+... +.++.+++
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~--g~~v~ii~ 34 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR--GKRVAVLA 34 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEE
Confidence 37899999999999999999988654 34454444
No 367
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.57 E-value=0.031 Score=47.37 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=23.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
..++|.|+||+||||+|+.+++.+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 36899999999999999999998864
No 368
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.57 E-value=0.02 Score=55.09 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=28.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc-cccCCccEEEecCCc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK-ESEAKETVRIIDEAS 41 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~-~~~~~~~v~~~~~~~ 41 (303)
+|+|.|++|+||||.+..|+.++. .. -+..|.+++-+.
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~-~g~~V~li~~D~ 261 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLY-GKKKVALITLDT 261 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEECCc
Confidence 689999999999999999998775 21 145666666443
No 369
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.56 E-value=0.0026 Score=65.86 Aligned_cols=27 Identities=26% Similarity=0.555 Sum_probs=24.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
+.++|.|+||+||||+|+.|++.++..
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~~ 374 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNRK 374 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 468999999999999999999998653
No 370
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.56 E-value=0.0019 Score=52.56 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.7
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
|.-|+|.|..|||||||++.|...
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCC
Confidence 788999999999999999998653
No 371
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.56 E-value=0.0012 Score=52.68 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=18.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|+|.|.||.||||+|+.|++.++..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc
Confidence 7899999999999999999998754
No 372
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.55 E-value=0.034 Score=49.30 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
-++|.|.+||||||+...|...+...
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~ 40 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHK 40 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhccc
Confidence 47899999999999999998877654
No 373
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.55 E-value=0.0019 Score=56.00 Aligned_cols=20 Identities=45% Similarity=0.732 Sum_probs=18.2
Q ss_pred EEEEEccCCCCHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLA 22 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La 22 (303)
+++|+|++||||||+.+.|-
T Consensus 30 vv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999864
No 374
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.55 E-value=0.0029 Score=56.97 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=60.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC-ccCCCccc--cCCCchhhHHHHHHHHHHHHHhcCCC-CEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA-SFHLDRNQ--SYASMPAEKNLRGVLRSEVDRSVSKD-NII 77 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~-~~~~~~~~--~y~~~~~e~~~r~~l~~~v~~~L~~~-~~V 77 (303)
..|+|+|.+||||||+.+.|.+++... ...++.+.+. .+...... .+....... .+...+..+|..+ +.+
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~--~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~----~~~~~l~~~LR~~pD~i 201 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPE--DERIVTIEDPPELRLPGPNQIQIQTRRDEI----SYEDLLKSALRQDPDVI 201 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTT--TSEEEEEESSS-S--SCSSEEEEEEETTTB----SHHHHHHHHTTS--SEE
T ss_pred eEEEEECCCccccchHHHHHhhhcccc--ccceEEeccccceeecccceEEEEeecCcc----cHHHHHHHHhcCCCCcc
Confidence 479999999999999999999888653 2455555542 23221110 010000111 2223445566644 455
Q ss_pred EEcCCCCchHHHHHHHHHHHHcCCcE--EEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 047717 78 IVDSLNSIKGYRYELWCLARAAGIRY--CVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLV 139 (303)
Q Consensus 78 IvD~~n~~k~~R~~l~~~ak~~~~~~--~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~ 139 (303)
|+.-.-....+. +. .|...|... ..+|-. +...+..|+..-.. ..+.+.+.++.
T Consensus 202 iigEiR~~e~~~--~~-~a~~tGh~~~~tT~Ha~-s~~~~i~Rl~~l~~----~~~~~~l~~~l 257 (270)
T PF00437_consen 202 IIGEIRDPEAAE--AI-QAANTGHLGSLTTLHAN-SAEDAIERLADLGM----EMDPESLRSRL 257 (270)
T ss_dssp EESCE-SCHHHH--HH-HHHHTT-EEEEEEEE-S-SHHHHHHHHHHHCC----TSCHHHHHHHH
T ss_pred cccccCCHhHHH--HH-HhhccCCceeeeeeecC-CHHHHHHHHHHHhc----ccCHHHHHHHH
Confidence 555433333322 21 233344433 444443 45556777765432 14555444433
No 375
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.54 E-value=0.024 Score=51.96 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=23.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
+++.|+||+||||.|..|++.+...
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCC
Confidence 8999999999999999999998753
No 376
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.54 E-value=0.015 Score=55.97 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.7
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
||.|+|.|.||+||||+.+.|...
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~ 24 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGK 24 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999998643
No 377
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.54 E-value=0.035 Score=56.24 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=23.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.++|+|++|+||||+|+.|++.+.+.
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhccc
Confidence 58999999999999999999998764
No 378
>PRK09354 recA recombinase A; Provisional
Probab=96.53 E-value=0.022 Score=53.23 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=27.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.++.|.|+|||||||+|-+++...... +..+++++-+
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E 97 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAE 97 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCc
Confidence 378899999999999999987655433 4456666643
No 379
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.53 E-value=0.0031 Score=65.12 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=24.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
+.++|.|+||+||||+++.+++.++..
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l~~~ 376 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKATGRK 376 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 578999999999999999999988753
No 380
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.52 E-value=0.0021 Score=57.83 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|+|.|+||+|||++|+.|+..++.
T Consensus 24 vLL~G~~GtGKT~lA~~la~~lg~ 47 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKRDR 47 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 678999999999999999987754
No 381
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.51 E-value=0.026 Score=52.03 Aligned_cols=105 Identities=12% Similarity=0.182 Sum_probs=56.2
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCCC
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLN 83 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~n 83 (303)
++|.|.||+|||+++.+|+..+... +..+.++.-..+-..-...+.+. .+...+ ..+.+-.++|+|...
T Consensus 159 l~L~G~~G~GKThLa~Aia~~l~~~--g~~v~~~~~~~l~~~lk~~~~~~--------~~~~~l-~~l~~~dlLiIDDiG 227 (306)
T PRK08939 159 LYLYGDFGVGKSYLLAAIANELAKK--GVSSTLLHFPEFIRELKNSISDG--------SVKEKI-DAVKEAPVLMLDDIG 227 (306)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEEEHHHHHHHHHHHHhcC--------cHHHHH-HHhcCCCEEEEecCC
Confidence 7899999999999999999998654 34444433111100000111111 111122 335677899999875
Q ss_pred ---CchHHHHHHHH-HHH-Hc-CCcEEEEEEecCHHHHHHHH
Q 047717 84 ---SIKGYRYELWC-LAR-AA-GIRYCVLYCDLEEDHCRKWN 119 (303)
Q Consensus 84 ---~~k~~R~~l~~-~ak-~~-~~~~~vI~l~~~~e~~~~R~ 119 (303)
...+.|.++.. +.. .+ .....++=-..+.+.+.++.
T Consensus 228 ~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 228 AEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred CccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 34555655544 322 21 22222333345666666555
No 382
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.51 E-value=0.0033 Score=55.05 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=25.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
.++|+|.||+|||++|+.++...... +..+++++
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~--~~~~~~i~ 77 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYG--GRNARYLD 77 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEe
Confidence 58999999999999999999876432 23444443
No 383
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.50 E-value=0.023 Score=49.64 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=24.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+++|.|.|||||||++.+++...-.. +..+++++
T Consensus 22 ~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is 55 (229)
T TIGR03881 22 FVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVT 55 (229)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEE
Confidence 78999999999999999877543222 34455554
No 384
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.50 E-value=0.0022 Score=58.74 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-++|+|+||+|||++|+.+++.++.
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~ 56 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998864
No 385
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.50 E-value=0.011 Score=54.65 Aligned_cols=35 Identities=34% Similarity=0.361 Sum_probs=27.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
++.|.|+|||||||+|-+++...... +..++++|-
T Consensus 57 iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~ 91 (325)
T cd00983 57 IIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDA 91 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECc
Confidence 78899999999999999988665433 445666664
No 386
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.49 E-value=0.0019 Score=63.66 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=24.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
++++|.|+||+||||+|+.|++.+...
T Consensus 104 ~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 104 QILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 589999999999999999999988753
No 387
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.49 E-value=0.015 Score=54.74 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+|+|+|++||||||+.+.|...+..
T Consensus 136 lilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 136 IVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999999999988753
No 388
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.035 Score=54.96 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=23.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|+|+||+||||+|+.+++.+.+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4689999999999999999999975
No 389
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.023 Score=55.25 Aligned_cols=67 Identities=22% Similarity=0.340 Sum_probs=40.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL 82 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~ 82 (303)
+++.|+||||||++|.+++..-...+ +.+++.+.+ .+|..+..-..+...+..+-+ +.-.++|+|..
T Consensus 541 vLl~Gp~~sGKTaLAA~iA~~S~FPF----vKiiSpe~m-----iG~sEsaKc~~i~k~F~DAYk---S~lsiivvDdi 607 (744)
T KOG0741|consen 541 VLLEGPPGSGKTALAAKIALSSDFPF----VKIISPEDM-----IGLSESAKCAHIKKIFEDAYK---SPLSIIVVDDI 607 (744)
T ss_pred EEEecCCCCChHHHHHHHHhhcCCCe----EEEeChHHc-----cCccHHHHHHHHHHHHHHhhc---CcceEEEEcch
Confidence 78999999999999999998765442 445554322 234433333333333332222 23467888874
No 390
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.48 E-value=0.097 Score=46.49 Aligned_cols=37 Identities=35% Similarity=0.341 Sum_probs=31.6
Q ss_pred CEEEEEEccC-CCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 1 MALIVICGQP-SSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 1 M~LI~l~G~P-GSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
|++|.|.|+- |+||||++..|+-.|... +..|+.+|-
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~--G~~VlaID~ 38 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARL--GESVLAIDL 38 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHC--CCcEEEEeC
Confidence 9999999986 699999999999999875 567777763
No 391
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.48 E-value=0.017 Score=53.78 Aligned_cols=34 Identities=21% Similarity=0.461 Sum_probs=27.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
-++|.|.||+|||++|..++..+-.. +..|++++
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t 218 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRT 218 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEE
Confidence 47899999999999999999988654 45666655
No 392
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.46 E-value=0.0035 Score=52.77 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=23.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
..++++|++|+|||.+|+.|++.+.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999999997
No 393
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.46 E-value=0.0022 Score=59.52 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+-++|.|+||+||||+|+.+++.++.
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhCC
Confidence 35889999999999999999999864
No 394
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.46 E-value=0.045 Score=54.94 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
-++|+|++|+||||+|+.|++.+.+.
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 47899999999999999999999764
No 395
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.45 E-value=0.049 Score=54.37 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=23.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|+|+||.||||+|+.|++.+..
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhcc
Confidence 5899999999999999999999875
No 396
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.1 Score=52.60 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
-++|+|+||+||||+|+.|++.+.+.
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 37899999999999999999999763
No 397
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.44 E-value=0.02 Score=51.39 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=26.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+++|.|.||+||||++.+++..+-.. .+..|.+++
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS 66 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTIS 66 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEE
Confidence 78999999999999999998765322 134565555
No 398
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.44 E-value=0.0045 Score=54.10 Aligned_cols=37 Identities=30% Similarity=0.360 Sum_probs=28.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.++.|+|.||||||++|.+++...-.. +..+++++-+
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC
Confidence 378999999999999999998766433 4567777644
No 399
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.44 E-value=0.0088 Score=60.04 Aligned_cols=26 Identities=27% Similarity=0.586 Sum_probs=23.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.+.+|||+||-||||+|+-+|++-+.
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGY 352 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGY 352 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCc
Confidence 37899999999999999999998754
No 400
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.44 E-value=0.0026 Score=57.99 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
-++|.|+||+||||+|+.+++.+...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~ 85 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRL 85 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999887653
No 401
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.43 E-value=0.0024 Score=53.68 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=20.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
+++|+|.||||||++|.+++...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~ 23 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL 23 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999998763
No 402
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.43 E-value=0.041 Score=51.47 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=27.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc----ccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE----SEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~----~~~~~~v~~~~~~ 40 (303)
.++.|+|.||||||++|.+++-.... .+.+..++++|.+
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE 169 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTE 169 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcC
Confidence 47789999999999999998743221 1123467777754
No 403
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.43 E-value=0.022 Score=48.16 Aligned_cols=104 Identities=14% Similarity=0.028 Sum_probs=52.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL 82 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~ 82 (303)
++.|.|+.||||||+.+.|+-.+... ...+.++...++...... .-+..++. .+. .+...+....++|+|-+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~q~~-~LSgGq~q---rv~-laral~~~p~lllLDEP 98 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGITPVYKPQYI-DLSGGELQ---RVA-IAAALLRNATFYLFDEP 98 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEEEEEEcccC-CCCHHHHH---HHH-HHHHHhcCCCEEEEECC
Confidence 68999999999999999988765321 122333322111100000 01112211 111 23334456789999975
Q ss_pred C--CchHHHHHHHHHHHHc-CC-cEEEEEEecCHHH
Q 047717 83 N--SIKGYRYELWCLARAA-GI-RYCVLYCDLEEDH 114 (303)
Q Consensus 83 n--~~k~~R~~l~~~ak~~-~~-~~~vI~l~~~~e~ 114 (303)
. .-...+..+..+.+.. .. ...+|.+.-..+.
T Consensus 99 ts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 99 SAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV 134 (177)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 4 3344555555543332 11 1245555544443
No 404
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.42 E-value=0.049 Score=51.93 Aligned_cols=26 Identities=38% Similarity=0.579 Sum_probs=23.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
-++|.|+||+||||+|+.+++.+.+.
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 37899999999999999999988653
No 405
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.42 E-value=0.036 Score=56.80 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=27.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS 41 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~ 41 (303)
+|.|+|+.|+||||.+..|+..+....-...|.+++.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt 225 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS 225 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc
Confidence 789999999999999999998773221123555555443
No 406
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.41 E-value=0.0026 Score=62.58 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=24.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.+++|+|+|||||||..+.|++.++..
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~ 72 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFE 72 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 478999999999999999999999754
No 407
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.41 E-value=0.04 Score=50.90 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=27.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc----cCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES----EAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~----~~~~~v~~~~~~ 40 (303)
.++.|+|.||||||++|.+++-..... +.+..++++|.+
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE 139 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTE 139 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcC
Confidence 478899999999999999887432211 123467777744
No 408
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.41 E-value=0.0026 Score=52.67 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l 25 (303)
|+++++|++||||||+.+.+.+..
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcc
Confidence 689999999999999999887654
No 409
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.055 Score=54.22 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.++|+|++|+||||+|+.|++.+.+.
T Consensus 40 ayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 57899999999999999999998753
No 410
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.41 E-value=0.06 Score=44.77 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHHc
Q 047717 4 IVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~ 26 (303)
|++.|.+||||||+.+.|.....
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~ 24 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTG 24 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcC
Confidence 78999999999999999977644
No 411
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.40 E-value=0.014 Score=51.02 Aligned_cols=124 Identities=17% Similarity=0.180 Sum_probs=68.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC--CccCCCccccCCCchh--------hHHHH----------HH
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE--ASFHLDRNQSYASMPA--------EKNLR----------GV 62 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~--~~~~~~~~~~y~~~~~--------e~~~r----------~~ 62 (303)
-|+|+|+.|+||+|+.+.|.++++.. ++..| .... ...+-.....|.-... ....+ +.
T Consensus 39 ~ivl~gpsg~gk~tll~~l~ee~~~~-~~fsv-S~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGt 116 (231)
T KOG0707|consen 39 PIVLSGPSGVGKSTLLKRLREELGGM-FGFSV-SHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGT 116 (231)
T ss_pred eEEEeCCCCcchhHHHHHHHHHcCCc-ceEEe-cCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCc
Confidence 48999999999999999999999752 11111 0000 0000000111211100 00011 11
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEe-cCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 047717 63 LRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCD-LEEDHCRKWNKERHEKGEAAYDDKIFEDLV 139 (303)
Q Consensus 63 l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~-~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~ 139 (303)
-..++++....+...|+|- ..+|. ..+++.....+.+|+. ++...+.+|+.+|+. .+..+.+.++.
T Consensus 117 si~av~~~~~~gk~~ildI--d~qg~-----~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgt----e~~~~l~~r~~ 183 (231)
T KOG0707|consen 117 SIAAVQRLMLSGKVCILDI--DLQGV-----QPIRATSLDAIYIFIKPPSIKILEERLRARGT----ETEESLLKRLK 183 (231)
T ss_pred hHHHHHHHHhcCCcceeeh--hhcCc-----eeeecCCCceEEEEecCCcchhHHHHhhccCc----chHHHHHHHHH
Confidence 1235666667788888875 22221 1234446677888876 456678999998853 24556777776
No 412
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.047 Score=55.09 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+-++|+|+||+||||+|+.+++.+.+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcC
Confidence 35789999999999999999999976
No 413
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=96.38 E-value=0.16 Score=49.73 Aligned_cols=144 Identities=16% Similarity=0.130 Sum_probs=87.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEEEcC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIIIVDS 81 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VIvD~ 81 (303)
||++.|.-+|||.-..+.|.+.++.. +..|+.+... +..|+ .+..|- .+-+.| ..|.+.|+|.
T Consensus 301 livfeG~DaAGKgg~I~rl~~~ldPr--g~~v~~~~~P------------t~~E~-~~~~lw-Rf~~~lP~~G~i~iFdR 364 (493)
T TIGR03708 301 VLVFEGWDAAGKGGAIRRVTEALDAR--QYRVVPIAAP------------TDEEK-AQHYLW-RFWRHIPRRGRITIFDR 364 (493)
T ss_pred EEEEEcccCCCCcHHHHHHHhhcCCC--eeEEEeCCCc------------CHHHH-cCcHHH-HHHHhCCCCCeEEEEcC
Confidence 79999999999999999999988765 3344433311 11122 121222 233444 5789999998
Q ss_pred CCCchH-------------HH--H----HHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCC--CCH------HH
Q 047717 82 LNSIKG-------------YR--Y----ELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAA--YDD------KI 134 (303)
Q Consensus 82 ~n~~k~-------------~R--~----~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~--~~~------e~ 134 (303)
..|..- ++ | .+....-+.|+.++.+|+.++.++-.+|+.+|..+.... +++ +.
T Consensus 365 SwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p~k~WK~t~~D~~~r~~ 444 (493)
T TIGR03708 365 SWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTPFKRYKITDEDWRNREK 444 (493)
T ss_pred CccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCCccCCcCCHHHHHHHHh
Confidence 776321 21 1 122223457888999999999999999999998754332 232 22
Q ss_pred HHHHHHHhcCCCC-CCCCCCceeeeCCCC
Q 047717 135 FEDLVRRFEKPDR-RNRWDSPLFELCPYK 162 (303)
Q Consensus 135 ~~~l~~r~E~P~~-~~rwd~pl~~i~~~~ 162 (303)
+++....|+.-.. .+.=.+|..+|.+++
T Consensus 445 w~~Y~~a~~~ml~~T~t~~APW~vI~a~d 473 (493)
T TIGR03708 445 WDAYEDAVNDMIDRTSTIIAPWTLVEAND 473 (493)
T ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEeCCC
Confidence 3333333333222 222346888888753
No 414
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.012 Score=58.08 Aligned_cols=24 Identities=33% Similarity=0.744 Sum_probs=21.7
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|+|+|+||||||-+|+++|..-+.
T Consensus 548 vLL~GPPGCGKTLlAKAVANEag~ 571 (802)
T KOG0733|consen 548 VLLCGPPGCGKTLLAKAVANEAGA 571 (802)
T ss_pred eEEeCCCCccHHHHHHHHhhhccC
Confidence 799999999999999999987654
No 415
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.36 E-value=0.0048 Score=52.56 Aligned_cols=28 Identities=36% Similarity=0.417 Sum_probs=24.7
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|-.|-+.|+||||||++..++.+.+...
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~ 40 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDE 40 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhh
Confidence 4579999999999999999999988664
No 416
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.36 E-value=0.039 Score=55.71 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.++|+|++|+||||+|+.+++.+++.
T Consensus 40 AyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 40 AYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 37899999999999999999999863
No 417
>PRK03003 GTP-binding protein Der; Reviewed
Probab=96.35 E-value=0.02 Score=55.88 Aligned_cols=109 Identities=11% Similarity=0.171 Sum_probs=54.6
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccc---cCCc--cEEE----ecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKES---EAKE--TVRI----IDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV 71 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~---~~~~--~v~~----~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L 71 (303)
||.|+|.|.||+||||+.+.|...-... ..+. +.+. .+...+.+.+..++.... ..+...+...+..++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHHHHHHHH
Confidence 6889999999999999999987532111 0111 1111 011111111111222111 111112222222222
Q ss_pred --CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC
Q 047717 72 --SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE 111 (303)
Q Consensus 72 --~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~ 111 (303)
...-++|+|+.+.......++....+..+.++.+|.-.++
T Consensus 116 ~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~D 157 (472)
T PRK03003 116 RTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVD 157 (472)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 3456788999875433334555555666777777764444
No 418
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.33 E-value=0.0031 Score=51.75 Aligned_cols=21 Identities=33% Similarity=0.378 Sum_probs=19.2
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 047717 4 IVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~ 24 (303)
|+|+|.+||||||+|..|.++
T Consensus 17 vLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 17 VLITGPSGIGKSELALELIKR 37 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHc
Confidence 789999999999999988765
No 419
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.32 E-value=0.027 Score=50.41 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=26.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+++|+|.||||||+++.+.+...-.. +.++++++
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs 58 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVS 58 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEE
Confidence 78999999999999999988766443 45566655
No 420
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=96.32 E-value=0.055 Score=45.52 Aligned_cols=113 Identities=15% Similarity=0.195 Sum_probs=62.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC-------ccCCC-----ccccCCCchhhHHHH----------
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA-------SFHLD-----RNQSYASMPAEKNLR---------- 60 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~-------~~~~~-----~~~~y~~~~~e~~~r---------- 60 (303)
+|+|+|--+|||-|.|..|.+.++.. ...++.+++. ..+.. ....|........++
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~--~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp 78 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGAD--VCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP 78 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccc--cceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCc
Confidence 58999999999999999998888642 1224555542 11111 112333221111111
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHh
Q 047717 61 GVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER 122 (303)
Q Consensus 61 ~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R 122 (303)
+.+-..+...+. ..++||+++-.... +.-+...+|..+..|.+.++.++..+|.-..
T Consensus 79 ~~F~r~~~~~~~-~~v~iIsD~Rr~~d----v~~f~~~~g~~~~~VRV~AseetR~~Rgw~F 135 (182)
T TIGR01223 79 GFFCRKIVEGIS-QPIWLVSDTRRVSD----IQWFREAYGAVTQTVRVVALEQSRQQRGWVF 135 (182)
T ss_pred cHHHHHHHhccC-CCEEEEeCCCcccH----HHHHHHHcCCceEEEEEecCHHHHHHHHHhc
Confidence 111122223333 35777777532211 1112244577888999999999988877544
No 421
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.093 Score=50.50 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=84.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcC-CCCEEEEcC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVS-KDNIIIVDS 81 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~-~~~~VIvD~ 81 (303)
||+=....|+||||.|+.|.+.|++. ++--| .-.+-.. .+ .+..++..... ...+|++|-
T Consensus 376 ll~pia~igcgktt~ak~l~~lf~w~-----~vqnd-~lsgk~~---------~k----~~~kai~~~~r~~~~~v~~dr 436 (758)
T COG5324 376 LLVPIATIGCGKTTVAKILEKLFGWP-----VVQND-NLSGKGG---------PK----RFAKAIIEEFRNGHSVVFADR 436 (758)
T ss_pred EEEEEEEeccCcccHHHHHHHHcCCc-----ccccC-CCCCCCc---------hh----HHHHHHHHHhccCceEEEEcc
Confidence 66677788999999999999999774 22222 1111111 11 12223333333 346788999
Q ss_pred CCCchHHHHHHHHHHHHcCCcEEEEEE---ecC--HHHHHHHHHHhhhcC-CCCCCH------HHHHHHHHHhcCCCCCC
Q 047717 82 LNSIKGYRYELWCLARAAGIRYCVLYC---DLE--EDHCRKWNKERHEKG-EAAYDD------KIFEDLVRRFEKPDRRN 149 (303)
Q Consensus 82 ~n~~k~~R~~l~~~ak~~~~~~~vI~l---~~~--~e~~~~R~~~R~~~~-~~~~~~------e~~~~l~~r~E~P~~~~ 149 (303)
.|.+..+|.+|..-.-.+...+.+|-+ ..| ++...+|..+|+..- .-.+++ .++.....+|.+-+.-+
T Consensus 437 nnh~~~~r~~lq~d~l~~~~~vr~v~~p~~~~~ev~e~~~~rvlqrg~~hqsik~~eg~~kv~~imn~f~k~ykp~~~~~ 516 (758)
T COG5324 437 NNHISNMRSTLQTDILALIDGVRFVALPFKHTPEVPEFVQNRVLQRGDRHQSIKVSEGVDKVKAIMNTFYKQYKPFDAGN 516 (758)
T ss_pred cchhhhhhhhhhcceEEEecCcEEEecccccCcccHHHHHHHHHhccCCccceeeccchHHHHHHHHHHHHhcCCCCCCC
Confidence 998888887765411112222222222 111 466889999998631 001222 56777888998755444
Q ss_pred CCCC---ceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717 150 RWDS---PLFELCPYKDAIENSSAAILDAVAYLTK 181 (303)
Q Consensus 150 rwd~---pl~~i~~~~~~~~~~~~~~~ei~~~l~~ 181 (303)
.-|. -.+.+++.. .+-+....|+..+-+
T Consensus 517 ~~d~~~d~~ield~~~----~sl~nar~i~n~~~k 547 (758)
T COG5324 517 KHDANYDDIIELDPLI----GSLENARRIVNYFKK 547 (758)
T ss_pred Cccccccceeeccccc----chhhhHHHHHHHHHh
Confidence 4333 234444432 222334555555543
No 422
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.31 E-value=0.048 Score=50.22 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=26.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
.|+|+|.+||||||+.+.|...+... ..++.+++
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied 179 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIED 179 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcC
Confidence 68999999999999999998877532 34455543
No 423
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=96.31 E-value=0.0037 Score=51.55 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=25.0
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|..|.|.|+-+|||||++++|+..|+.
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCC
Confidence 568999999999999999999999975
No 424
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.31 E-value=0.003 Score=60.12 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=22.2
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|+|.|+||+|||++|+.++..++.
T Consensus 168 vLL~GppGtGKT~lAkaia~~~~~ 191 (389)
T PRK03992 168 VLLYGPPGTGKTLLAKAVAHETNA 191 (389)
T ss_pred eEEECCCCCChHHHHHHHHHHhCC
Confidence 889999999999999999998764
No 425
>PRK06851 hypothetical protein; Provisional
Probab=96.30 E-value=0.0059 Score=57.45 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=24.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.+++|+|.||+||||+.++|.+.+...
T Consensus 31 ~~~il~G~pGtGKStl~~~i~~~~~~~ 57 (367)
T PRK06851 31 RIFILKGGPGTGKSTLMKKIGEEFLEK 57 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 479999999999999999999998654
No 426
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.30 E-value=0.0038 Score=48.39 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHH
Q 047717 4 IVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l 25 (303)
|+|.|.+||||||+.+.|....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999988644
No 427
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.29 E-value=0.0027 Score=55.48 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHH
Q 047717 4 IVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l 25 (303)
|+|.|.|||||||+.+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 6899999999999999988874
No 428
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.28 E-value=0.021 Score=49.81 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH-ccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL-KESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l-~~~~~~~~v~~~~ 38 (303)
+++|+|.||||||++|.+++... ... +..+++++
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs 55 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVS 55 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEE
Confidence 78999999999999999976443 321 23455554
No 429
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.27 E-value=0.0057 Score=54.91 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=25.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+++|+|.||+||||+|.+++...-.. +..+.+++
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis 71 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVT 71 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEE
Confidence 78999999999999999987654322 34555555
No 430
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.27 E-value=0.0037 Score=48.35 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=18.6
Q ss_pred EEEEEccCCCCHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLA 22 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La 22 (303)
.++|.|++||||||+++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 68999999999999999976
No 431
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.25 E-value=0.0045 Score=57.88 Aligned_cols=34 Identities=26% Similarity=0.559 Sum_probs=26.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
.|+|+|.+||||||+.+.|...+.. ...++.++|
T Consensus 164 nilI~G~tGSGKTTll~aLl~~i~~---~~rivtiEd 197 (344)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPP---QERLITIED 197 (344)
T ss_pred eEEEECCCCccHHHHHHHHHcccCC---CCCEEEECC
Confidence 6999999999999999999988764 234455544
No 432
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.028 Score=55.19 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=22.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
-|+|.|+||+|||.+|++++..++..
T Consensus 278 giLl~GpPGtGKT~lAkava~~~~~~ 303 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVALESRSR 303 (494)
T ss_pred eeEEECCCCCCHHHHHHHHHhhCCCe
Confidence 48999999999999999999976543
No 433
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.25 E-value=0.0046 Score=53.32 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=23.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
..|.|+|++||||||+.+.+...+..
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 46899999999999999999988754
No 434
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.23 E-value=0.0029 Score=55.34 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=18.8
Q ss_pred EEEEEEccCCCCHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLA 22 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La 22 (303)
.+++|+|.||+||||+|+.|+
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC
Confidence 369999999999999999874
No 435
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.22 E-value=0.092 Score=50.04 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=30.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
-++|.|..|+|||.+.+++..+....+.+..++.+..
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s 151 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS 151 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH
Confidence 4789999999999999999998887665556665543
No 436
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.22 E-value=0.004 Score=59.68 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=23.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
-|+|.|+||+|||++|+.|++.++..
T Consensus 110 ~iLl~Gp~GtGKT~lAr~lA~~l~~p 135 (412)
T PRK05342 110 NILLIGPTGSGKTLLAQTLARILDVP 135 (412)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 38999999999999999999988653
No 437
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.22 E-value=0.0041 Score=48.30 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=18.6
Q ss_pred EEEEccCCCCHHHHHHHHHH
Q 047717 4 IVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~ 23 (303)
|+|.|.||+||||+.+.|..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999874
No 438
>PF13479 AAA_24: AAA domain
Probab=96.21 E-value=0.017 Score=50.25 Aligned_cols=19 Identities=47% Similarity=0.697 Sum_probs=17.2
Q ss_pred EEEEEccCCCCHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCL 21 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~L 21 (303)
-++|.|.||+||||+|..+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEEECCCCCCHHHHHHhC
Confidence 4899999999999999975
No 439
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.21 E-value=0.064 Score=44.45 Aligned_cols=107 Identities=12% Similarity=0.130 Sum_probs=53.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC-------CccccCCCchhhHHHHHHHHHHHHHhcCCCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL-------DRNQSYASMPAEKNLRGVLRSEVDRSVSKDN 75 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~-------~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~ 75 (303)
++.|.|+.||||||+.+.|+-..... ...+.++...... .+...|...-+....+ .+ ..+...+..-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~q-rl-~laral~~~p~ 102 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQ-MV-EIARALARNAR 102 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHH-HH-HHHHHHhcCCC
Confidence 68899999999999999998654321 2223333221110 0011121111111111 11 12223445668
Q ss_pred EEEEcCCC--CchHHHHHHHHHHHHcC-CcEEEEEEecCHHH
Q 047717 76 IIIVDSLN--SIKGYRYELWCLARAAG-IRYCVLYCDLEEDH 114 (303)
Q Consensus 76 ~VIvD~~n--~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~ 114 (303)
++|+|-+. .-...+..+..+.+... ....+|.+.-+.+.
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 99999765 34555666666554331 12235555444443
No 440
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.21 E-value=0.042 Score=51.75 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=24.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
+.++|+|+||+||||+|+.+++.+...
T Consensus 40 ~~~L~~G~~G~GKt~~a~~la~~l~~~ 66 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARILARKINQP 66 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 368999999999999999999998753
No 441
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.21 E-value=0.0064 Score=42.13 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.+|+|..||||||+-.++.-.+
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999887655
No 442
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.20 E-value=0.0068 Score=52.06 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=26.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+.+|.|+||+||||+.+.+.+.+... +..++.+.
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~--g~~v~~~a 53 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAA--GKRVIGLA 53 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHT--T--EEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhC--CCeEEEEC
Confidence 68899999999999999999988764 34555543
No 443
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.20 E-value=0.039 Score=51.78 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=22.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l 25 (303)
.+|+|.|.||||||.+|-.|+..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 479999999999999999999998
No 444
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.18 E-value=0.0037 Score=58.91 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-++|.|+||+|||++|+.++..++.
T Consensus 158 gvLL~GppGtGKT~lakaia~~l~~ 182 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVAHETNA 182 (364)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCC
Confidence 3889999999999999999998764
No 445
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.18 E-value=0.081 Score=52.32 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=22.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++++|+||+||||+|+.|++.+..
T Consensus 38 ayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 38 AYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Confidence 6799999999999999999999854
No 446
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=96.17 E-value=0.0075 Score=60.51 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=27.7
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCC
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAK 31 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~ 31 (303)
|++|-|+|.+||||||+...|..+|...++.
T Consensus 10 ~~vi~ivG~s~sGKTTlie~li~~L~~~G~r 40 (597)
T PRK14491 10 IPLLGFCAYSGTGKTTLLEQLIPELNQRGLR 40 (597)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHHhCCce
Confidence 6899999999999999999999999876433
No 447
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.17 E-value=0.085 Score=53.85 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.++++|+||+||||+|+.+++.+.+.
T Consensus 42 AYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhccc
Confidence 57899999999999999999998763
No 448
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.16 E-value=0.069 Score=51.91 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=23.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|.|+||+||||+|+.+++.+..
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 5789999999999999999999865
No 449
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.15 E-value=0.004 Score=59.56 Aligned_cols=25 Identities=40% Similarity=0.514 Sum_probs=22.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-|+|.|+||+|||++|+.|++.++.
T Consensus 118 ~iLL~GP~GsGKT~lAraLA~~l~~ 142 (413)
T TIGR00382 118 NILLIGPTGSGKTLLAQTLARILNV 142 (413)
T ss_pred eEEEECCCCcCHHHHHHHHHHhcCC
Confidence 4899999999999999999988764
No 450
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.15 E-value=0.0049 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=18.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
+.+|.|+||+||||+...+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 47899999999998877777776
No 451
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.15 E-value=0.062 Score=51.84 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=26.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+++|.|.||+|||+++.+++...... .+..|.+++
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~-~g~~vl~~S 231 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIK-EGKPVAFFS 231 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh-CCCeEEEEe
Confidence 89999999999999999998765431 134566655
No 452
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.14 E-value=0.0053 Score=55.84 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.+|.|.|.|||||||+.+.|...+..
T Consensus 105 ~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 105 LVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47899999999999999999988754
No 453
>PHA03138 thymidine kinase; Provisional
Probab=96.13 E-value=0.1 Score=48.43 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=25.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
-|.|.|..|+||||.++.+.+.+... +..++.+.|
T Consensus 14 riYleG~~GvGKTT~~~~~l~~~~~~--~~~vl~vpE 48 (340)
T PHA03138 14 RIYLDGAFGIGKTTAAEAFLHGFAIN--PNRIFFIGE 48 (340)
T ss_pred EEEEECCCCcCHHhHHHHHHHhhhcC--CCceEEeeC
Confidence 58899999999999999888776542 122555554
No 454
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.10 E-value=0.0036 Score=54.01 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=19.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|+|.|+||+|||++|+.|...|..
T Consensus 25 lLl~GppGtGKTmlA~~l~~lLP~ 48 (206)
T PF01078_consen 25 LLLIGPPGTGKTMLARRLPSLLPP 48 (206)
T ss_dssp EEEES-CCCTHHHHHHHHHHCS--
T ss_pred eEEECCCCCCHHHHHHHHHHhCCC
Confidence 789999999999999999988764
No 455
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.09 E-value=0.0082 Score=53.76 Aligned_cols=38 Identities=34% Similarity=0.387 Sum_probs=33.2
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
|..|.++|--|+||||+|-.|+..|... +..|.++|-+
T Consensus 1 m~~iav~~KGGvGKTT~~~nLA~~La~~--G~kVlliD~D 38 (270)
T cd02040 1 MRQIAIYGKGGIGKSTTTQNLSAALAEM--GKKVMIVGCD 38 (270)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHHhC--CCeEEEEEcC
Confidence 7889999999999999999999999764 6788888754
No 456
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.09 E-value=0.11 Score=46.86 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=27.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
+.|+|+|++|+||||++..|+..+... +..+.+++-
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~--~~~v~~i~~ 111 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITT 111 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEec
Confidence 478999999999999999999887543 234444443
No 457
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.09 E-value=0.0046 Score=51.65 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
.|.|+|++||||||+-++++....
T Consensus 31 ~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccC
Confidence 589999999999999999886543
No 458
>COG0218 Predicted GTPase [General function prediction only]
Probab=96.07 E-value=0.065 Score=45.93 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=67.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHc--cc--cCCccE----EEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcC-
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALK--ES--EAKETV----RIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVS- 72 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~--~~--~~~~~v----~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~- 72 (303)
|=|++.|-+-+||||+.+.|..+-+ .. ..|.+- ..+++. +.+-+-.+|.-...-+..++.+...+.++|.
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~ 103 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEK 103 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc-EEEEeCCCcccccCCHHHHHHHHHHHHHHHhh
Confidence 5589999999999999999876332 11 011111 112221 1111112333333223444455555555554
Q ss_pred ----CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC
Q 047717 73 ----KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE 111 (303)
Q Consensus 73 ----~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~ 111 (303)
++-++++|+....+..-.+++.++...+.++.++.--++
T Consensus 104 R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~D 146 (200)
T COG0218 104 RANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKAD 146 (200)
T ss_pred chhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 346889999988888777889999999999999876554
No 459
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.06 E-value=0.012 Score=55.17 Aligned_cols=25 Identities=40% Similarity=0.655 Sum_probs=22.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.|+|.|+||+|||.+|-.+++.|+.
T Consensus 52 ~iLiaGppGtGKTAlA~~ia~eLG~ 76 (398)
T PF06068_consen 52 AILIAGPPGTGKTALAMAIAKELGE 76 (398)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCTT
T ss_pred EEEEeCCCCCCchHHHHHHHHHhCC
Confidence 5899999999999999999999985
No 460
>COG4240 Predicted kinase [General function prediction only]
Probab=96.04 E-value=0.0067 Score=52.94 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=24.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESE 29 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~ 29 (303)
++.|+|+-||||||+|..|...|...+
T Consensus 52 i~gisGpQGSGKStls~~i~~~L~~kg 78 (300)
T COG4240 52 IVGISGPQGSGKSTLSALIVRLLAAKG 78 (300)
T ss_pred EEEeecCCCCchhhHHHHHHHHHHHhc
Confidence 678999999999999999999998765
No 461
>PRK05636 replicative DNA helicase; Provisional
Probab=96.03 E-value=0.062 Score=52.94 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=26.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
||+|.|.||+|||++|-.++...... .+..+.+++
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~-~g~~v~~fS 301 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIK-HNKASVIFS 301 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEE
Confidence 89999999999999999998765322 134565555
No 462
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.03 E-value=0.035 Score=44.64 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=17.5
Q ss_pred EEEccCCCCHHHHHHHHHHH
Q 047717 5 VICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 5 ~l~G~PGSGKSTlA~~La~~ 24 (303)
++.|.+|+||||+.+.|...
T Consensus 1 ~l~G~~~~GKssl~~~l~~~ 20 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGR 20 (157)
T ss_pred CccCCCCCCHHHHHHHHhCC
Confidence 47899999999999998754
No 463
>PRK00089 era GTPase Era; Reviewed
Probab=96.03 E-value=0.057 Score=49.11 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
.|+|.|.|||||||+.+.|..
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g 27 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVG 27 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998753
No 464
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.03 E-value=0.005 Score=49.15 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|+|.+||||||+.+.|+....
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEEEEccCCCccccceeeeccccc
Confidence 689999999999999999876654
No 465
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.02 E-value=0.005 Score=58.77 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-|+|.|+||+|||++|+.++..++.
T Consensus 181 gvLL~GppGTGKT~LAkalA~~l~~ 205 (398)
T PTZ00454 181 GVLLYGPPGTGKTMLAKAVAHHTTA 205 (398)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4789999999999999999998754
No 466
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.01 E-value=0.088 Score=52.58 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.++++|++|+||||+|+.+++.+.+.
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 47899999999999999999998754
No 467
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.15 Score=50.08 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|+|+||+||||+|+.+++.+.+
T Consensus 40 ayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5789999999999999999999875
No 468
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.01 E-value=0.0053 Score=50.34 Aligned_cols=23 Identities=13% Similarity=0.327 Sum_probs=20.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
|+|+|.|.+||||||+.+.|...
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~ 23 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKT 23 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhc
Confidence 68999999999999999998753
No 469
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.01 E-value=0.0055 Score=58.96 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-|++.|+||+||||+|+.|+..+..
T Consensus 196 ~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 196 NIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4789999999999999999998853
No 470
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=96.00 E-value=0.062 Score=45.48 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=27.3
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC
Q 047717 72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE 111 (303)
Q Consensus 72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~ 111 (303)
...-++|+|+.......-.+....++..+.+..++.=.++
T Consensus 94 ~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D 133 (188)
T PF00009_consen 94 ADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMD 133 (188)
T ss_dssp SSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCT
T ss_pred cccceeeeecccccccccccccccccccccceEEeeeecc
Confidence 3556789999877777777777788889998544443333
No 471
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.99 E-value=0.042 Score=55.30 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.++|+|++|+||||+|+.|++.+++.
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 57999999999999999999999863
No 472
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=95.97 E-value=0.085 Score=44.98 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=18.4
Q ss_pred EEEEccCCCCHHHHHHHHHH
Q 047717 4 IVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~ 23 (303)
|+|.|.|||||||+.+.|..
T Consensus 3 i~lvG~~g~GKSsl~N~ilg 22 (196)
T cd01852 3 LVLVGKTGAGKSATGNTILG 22 (196)
T ss_pred EEEECCCCCCHHHHHHHhhC
Confidence 78999999999999999863
No 473
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=95.96 E-value=0.0056 Score=56.70 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=22.1
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
||+.+|+|+-||||||+.+.|.+.
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 589999999999999999998765
No 474
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.19 Score=47.47 Aligned_cols=139 Identities=19% Similarity=0.306 Sum_probs=68.5
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC--------Cc---cccCCCchhhHHHHHHHHHHHHHhcC
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL--------DR---NQSYASMPAEKNLRGVLRSEVDRSVS 72 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~--------~~---~~~y~~~~~e~~~r~~l~~~v~~~L~ 72 (303)
+++.|.||+|||+.++.+.+++.....+..++.++-....- .. ..........+.+. .+...+.. ..
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~-~l~~~~~~-~~ 122 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILK-RLYDNLSK-KG 122 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHH-HHHHHHHh-cC
Confidence 78899999999999999999997653333344444211100 00 00000011111222 23222222 33
Q ss_pred CCCEEEEcCCCCchHHH-HHHHHHHHHc---CCcEEEEEEecCHHHHHHHHHHhhhc----C---CCCCCH-HHHHHHHH
Q 047717 73 KDNIIIVDSLNSIKGYR-YELWCLARAA---GIRYCVLYCDLEEDHCRKWNKERHEK----G---EAAYDD-KIFEDLVR 140 (303)
Q Consensus 73 ~~~~VIvD~~n~~k~~R-~~l~~~ak~~---~~~~~vI~l~~~~e~~~~R~~~R~~~----~---~~~~~~-e~~~~l~~ 140 (303)
..-+||+|-.+..-... .-+|.+.+.. ...+.+|.+..+... ...+..|-.. . -.+|+. ++.+-+.+
T Consensus 123 ~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~-~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~ 201 (366)
T COG1474 123 KTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKF-LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRE 201 (366)
T ss_pred CeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHH-HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHH
Confidence 45678888766443221 3444444433 233455555555543 4444444321 1 135665 44455566
Q ss_pred HhcCC
Q 047717 141 RFEKP 145 (303)
Q Consensus 141 r~E~P 145 (303)
|-+.-
T Consensus 202 R~~~~ 206 (366)
T COG1474 202 RVEEG 206 (366)
T ss_pred HHHhh
Confidence 76653
No 475
>PRK09169 hypothetical protein; Validated
Probab=95.95 E-value=0.0095 Score=66.11 Aligned_cols=108 Identities=8% Similarity=-0.106 Sum_probs=60.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL 82 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~ 82 (303)
-|+|.|++|+||||+++.|+..++...++.+..+....+..+ ..+|... ...|+.-...+...+. ...||-.+.
T Consensus 2112 aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~GrkI--~rIFa~e---G~FRe~Eaa~V~Dllr-~~vVLSTGG 2185 (2316)
T PRK09169 2112 ARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIGKKI--ARIQALR---GLSPEQAAARVRDALR-WEVVLPAEG 2185 (2316)
T ss_pred ccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhCCCH--HHHHHhc---CchHHHHHHHHHHHhc-CCeEEeCCC
Confidence 478999999999999999999998754333322221111111 1111110 0222222223434443 444554443
Q ss_pred CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717 83 NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE 121 (303)
Q Consensus 83 n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~ 121 (303)
. ... ..+.+...+..|. +||+..+.++..+|...
T Consensus 2186 G-av~-~~enr~~L~~~Gl---vV~L~an~~tl~~Rty~ 2219 (2316)
T PRK09169 2186 F-GAA-VEQARQALGAKGL---RVMRINNGFAAPDTTYA 2219 (2316)
T ss_pred C-ccc-CHHHHHHHHHCCE---EEEEECCHHHHHHHhcc
Confidence 3 222 2233334456666 99999999998888854
No 476
>PRK10646 ADP-binding protein; Provisional
Probab=95.95 E-value=0.0074 Score=49.73 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=23.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+|+|.|--||||||+++.|++.++.
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 7999999999999999999999975
No 477
>PRK06851 hypothetical protein; Provisional
Probab=95.95 E-value=0.0091 Score=56.20 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=25.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESE 29 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~ 29 (303)
.+++|.|.||+||||+.+.+++.+...+
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G 242 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAEERG 242 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHhCC
Confidence 4799999999999999999999987664
No 478
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.94 E-value=0.14 Score=47.54 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
-++++|++|+||+|+|..+++.+.+.
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 47899999999999999999999763
No 479
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=95.93 E-value=0.026 Score=48.62 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
|-|+|.|++|||||++...|...
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~ 23 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTG 23 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Confidence 46899999999999999988653
No 480
>PRK08006 replicative DNA helicase; Provisional
Probab=95.93 E-value=0.091 Score=51.34 Aligned_cols=36 Identities=31% Similarity=0.375 Sum_probs=27.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
||+|.|.||.|||++|-.++...... -+..|.+++-
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~-~g~~V~~fSl 261 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAML-QDKPVLIFSL 261 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-cCCeEEEEec
Confidence 89999999999999999998775421 1456666653
No 481
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.91 E-value=0.0077 Score=49.17 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+|+|.|-=||||||+++.|++.++-
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred EEEEEcCCcCChHHHHHHHHHHcCC
Confidence 7999999999999999999999984
No 482
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.90 E-value=0.0064 Score=58.66 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-++|.|+||+|||++|+.++..+..
T Consensus 219 gVLL~GPPGTGKT~LAraIA~el~~ 243 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAKAVANETSA 243 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4789999999999999999998764
No 483
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=95.90 E-value=0.013 Score=53.65 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=22.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++|+|+|+.|||||.+|-.|+++.
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~~ 28 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKGK 28 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 589999999999999999999984
No 484
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.89 E-value=0.0096 Score=56.46 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=27.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+.++|+|+||+|||++++.+.+.+.....+..++.++
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in 92 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN 92 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 4578999999999999999999886532223444444
No 485
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.88 E-value=0.011 Score=51.71 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l 25 (303)
.++.|+|.||||||++|.+++-..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHe
Confidence 378999999999999999998553
No 486
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=95.87 E-value=0.14 Score=43.68 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.3
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 3 kI~i~G~~g~GKSSLin~L~g 23 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRG 23 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999875
No 487
>PRK10436 hypothetical protein; Provisional
Probab=95.85 E-value=0.058 Score=52.50 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=41.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC-ccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA-SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS 81 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~-~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~ 81 (303)
+|+++|+.||||||....+.+++... +..++.+.|. .+.+. .........+. ...+...++..|+.+..||+=|
T Consensus 220 liLvtGpTGSGKTTtL~a~l~~~~~~--~~~i~TiEDPvE~~l~--gi~Q~~v~~~~-g~~f~~~lr~~LR~dPDvI~vG 294 (462)
T PRK10436 220 LILVTGPTGSGKTVTLYSALQTLNTA--QINICSVEDPVEIPLA--GINQTQIHPKA-GLTFQRVLRALLRQDPDVIMVG 294 (462)
T ss_pred eEEEECCCCCChHHHHHHHHHhhCCC--CCEEEEecCCccccCC--CcceEeeCCcc-CcCHHHHHHHHhcCCCCEEEEC
Confidence 79999999999999887776766543 3445555542 22221 01100000000 0023345666777777777666
No 488
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.85 E-value=0.007 Score=48.19 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|++.|.+||||||+...|...
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999987643
No 489
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.80 E-value=0.0079 Score=52.74 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
++.|.|++||||||+-+.|.-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999987643
No 490
>PRK10536 hypothetical protein; Provisional
Probab=95.80 E-value=0.038 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
++++++|.+|+|||++|..++..
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998874
No 491
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.80 E-value=0.0079 Score=49.21 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=18.2
Q ss_pred EEEEccCCCCHHHHHHHHHH
Q 047717 4 IVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~ 23 (303)
|++.|.|||||||+.+.+..
T Consensus 3 i~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998864
No 492
>PRK06321 replicative DNA helicase; Provisional
Probab=95.79 E-value=0.098 Score=51.10 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=27.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
||+|.|.||.|||++|-.++...... .+..|.+++
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~-~g~~v~~fS 262 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQ-NRLPVGIFS 262 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 89999999999999999998876321 134566655
No 493
>PHA02244 ATPase-like protein
Probab=95.78 E-value=0.0082 Score=56.37 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=22.2
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|+|.|+||+|||++|+.|+..++..
T Consensus 122 VLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6789999999999999999987643
No 494
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.77 E-value=0.11 Score=49.90 Aligned_cols=36 Identities=33% Similarity=0.371 Sum_probs=27.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
|++|.|.||+|||++|-.++...... .+..|.+++-
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~-~g~~v~~fSl 231 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALR-EGKPVLFFSL 231 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEEC
Confidence 89999999999999999999766421 1456766663
No 495
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.77 E-value=0.0075 Score=54.38 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l 25 (303)
.+|+|.|++|+||||+|.++++..
T Consensus 20 ~~v~I~G~~G~GKT~LA~~~~~~~ 43 (287)
T PF00931_consen 20 RVVAIVGMGGIGKTTLARQVARDL 43 (287)
T ss_dssp EEEEEEESTTSSHHHHHHHHHCHH
T ss_pred EEEEEEcCCcCCcceeeeeccccc
Confidence 589999999999999999998773
No 496
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.1 Score=47.56 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
=|+|.|+||.|||.+|++++..-+.
T Consensus 168 giLLyGPPGTGKSYLAKAVATEAnS 192 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEANS 192 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhcCC
Confidence 4899999999999999999987664
No 497
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=95.75 E-value=0.008 Score=56.23 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=22.1
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
||+.+|+|+.||||||+.+.|.+.
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 689999999999999999998764
No 498
>PHA03133 thymidine kinase; Provisional
Probab=95.75 E-value=0.2 Score=46.78 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=27.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.|.|.|+.|.||||.++.+...++.. .+++.+.|.
T Consensus 42 rvYlDG~~GvGKTTt~~~l~~a~~~~---~~vl~~pEP 76 (368)
T PHA03133 42 RIYVDGPHGLGKTTTAAALAAALGRR---DDIEYVPEP 76 (368)
T ss_pred EEEEeCCCcCCHHHHHHHHHHhhCCC---CCeEEecCc
Confidence 58999999999999999998887643 346666654
No 499
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=95.74 E-value=0.055 Score=44.79 Aligned_cols=98 Identities=24% Similarity=0.256 Sum_probs=48.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc--cCCccEEE------ecCCccCC-CccccCCC---chhhHHHHHHHHHHHHHhc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKES--EAKETVRI------IDEASFHL-DRNQSYAS---MPAEKNLRGVLRSEVDRSV 71 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~--~~~~~v~~------~~~~~~~~-~~~~~y~~---~~~e~~~r~~l~~~v~~~L 71 (303)
|.+.|.|.+||||+-++|...-... +.+.++.. ..+..+.+ +-.+.|+- +..|+..+..+. ..-
T Consensus 3 ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~----~~~ 78 (156)
T PF02421_consen 3 IALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL----SEK 78 (156)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH----HTS
T ss_pred EEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh----hcC
Confidence 7899999999999999987554221 12222211 11111111 12234442 233444343222 111
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEE
Q 047717 72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLY 107 (303)
Q Consensus 72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~ 107 (303)
...-++|+|+++.-+. -|- .....+.+.|..++.
T Consensus 79 ~D~ii~VvDa~~l~r~-l~l-~~ql~e~g~P~vvvl 112 (156)
T PF02421_consen 79 PDLIIVVVDATNLERN-LYL-TLQLLELGIPVVVVL 112 (156)
T ss_dssp SSEEEEEEEGGGHHHH-HHH-HHHHHHTTSSEEEEE
T ss_pred CCEEEEECCCCCHHHH-HHH-HHHHHHcCCCEEEEE
Confidence 2335788999875433 232 233467788866654
No 500
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.74 E-value=0.047 Score=53.51 Aligned_cols=35 Identities=17% Similarity=0.396 Sum_probs=26.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
+|+++|++||||||....+...+... +..++.+.|
T Consensus 244 lilitGptGSGKTTtL~a~L~~l~~~--~~~iiTiED 278 (486)
T TIGR02533 244 IILVTGPTGSGKTTTLYAALSRLNTP--ERNILTVED 278 (486)
T ss_pred EEEEEcCCCCCHHHHHHHHHhccCCC--CCcEEEEcC
Confidence 79999999999999999877776543 334555554
Done!