Query 047717
Match_columns 303
No_of_seqs 308 out of 2184
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 03:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a4m_A L-seryl-tRNA(SEC) kinas 100.0 5.9E-44 2E-48 319.3 26.3 250 1-300 4-254 (260)
2 1ly1_A Polynucleotide kinase; 99.8 3.6E-18 1.2E-22 142.3 10.8 137 1-146 1-147 (181)
3 3zvl_A Bifunctional polynucleo 99.7 7.1E-17 2.4E-21 153.1 12.1 135 2-159 259-395 (416)
4 1ltq_A Polynucleotide kinase; 99.7 3.4E-16 1.2E-20 141.5 11.5 138 1-147 1-148 (301)
5 3t61_A Gluconokinase; PSI-biol 99.7 2.6E-16 9E-21 134.2 10.1 155 1-181 18-179 (202)
6 2yvu_A Probable adenylyl-sulfa 99.6 2.2E-15 7.5E-20 126.8 12.0 117 2-121 14-132 (186)
7 2vli_A Antibiotic resistance p 99.6 3.3E-15 1.1E-19 124.8 11.4 132 1-145 5-145 (183)
8 2rhm_A Putative kinase; P-loop 99.6 1.8E-14 6.1E-19 121.3 15.1 170 2-181 6-184 (193)
9 1knq_A Gluconate kinase; ALFA/ 99.6 2.7E-13 9.2E-18 112.6 18.2 143 1-161 8-157 (175)
10 3kb2_A SPBC2 prophage-derived 99.5 1E-13 3.5E-18 114.3 12.1 134 1-161 1-149 (173)
11 1qhx_A CPT, protein (chloramph 99.5 4E-13 1.4E-17 111.6 13.9 116 2-124 4-135 (178)
12 1x6v_B Bifunctional 3'-phospho 99.5 3E-13 1E-17 133.3 15.0 164 2-181 53-222 (630)
13 2ze6_A Isopentenyl transferase 99.5 3.1E-13 1E-17 119.7 13.4 136 1-147 1-165 (253)
14 4eun_A Thermoresistant glucoki 99.5 8.8E-14 3E-18 118.5 9.4 141 2-161 30-177 (200)
15 1m7g_A Adenylylsulfate kinase; 99.5 1.7E-13 5.6E-18 117.7 10.0 115 2-119 26-149 (211)
16 2axn_A 6-phosphofructo-2-kinas 99.5 3.1E-13 1.1E-17 131.4 12.6 123 2-124 36-170 (520)
17 2p5t_B PEZT; postsegregational 99.4 7.4E-13 2.5E-17 117.0 11.3 118 2-124 33-159 (253)
18 1gvn_B Zeta; postsegregational 99.4 1.5E-12 5.3E-17 117.3 13.4 135 2-141 34-184 (287)
19 3lw7_A Adenylate kinase relate 99.4 3.2E-13 1.1E-17 111.1 8.1 113 2-124 2-124 (179)
20 1tev_A UMP-CMP kinase; ploop, 99.4 1.1E-12 3.9E-17 110.1 11.5 117 2-124 4-136 (196)
21 1nks_A Adenylate kinase; therm 99.4 2.1E-12 7.1E-17 108.2 12.2 117 1-123 1-140 (194)
22 4eaq_A DTMP kinase, thymidylat 99.4 2.4E-11 8.1E-16 105.9 18.7 154 2-161 27-208 (229)
23 2pbr_A DTMP kinase, thymidylat 99.4 8.6E-12 2.9E-16 104.6 15.2 150 3-161 2-175 (195)
24 2cdn_A Adenylate kinase; phosp 99.4 7.8E-12 2.7E-16 106.2 14.5 150 3-161 22-185 (201)
25 2plr_A DTMP kinase, probable t 99.4 4.7E-12 1.6E-16 107.8 12.2 117 2-123 5-144 (213)
26 3uie_A Adenylyl-sulfate kinase 99.4 8.5E-12 2.9E-16 106.1 13.2 113 2-119 26-140 (200)
27 1m8p_A Sulfate adenylyltransfe 99.3 2.8E-12 9.5E-17 125.9 11.2 116 2-120 397-514 (573)
28 2z0h_A DTMP kinase, thymidylat 99.3 2E-11 6.8E-16 102.8 14.7 150 3-161 2-175 (197)
29 2c95_A Adenylate kinase 1; tra 99.3 7.2E-13 2.5E-17 111.6 5.7 116 1-124 9-135 (196)
30 4edh_A DTMP kinase, thymidylat 99.3 2.9E-11 9.9E-16 104.3 15.4 154 2-161 7-190 (213)
31 2bwj_A Adenylate kinase 5; pho 99.3 9E-13 3.1E-17 111.3 5.8 115 2-124 13-138 (199)
32 1qf9_A UMP/CMP kinase, protein 99.3 2.7E-12 9.1E-17 107.6 8.6 117 1-124 6-133 (194)
33 2jaq_A Deoxyguanosine kinase; 99.3 6.1E-12 2.1E-16 106.4 10.1 152 2-162 1-185 (205)
34 2wwf_A Thymidilate kinase, put 99.3 4.9E-12 1.7E-16 107.9 8.8 149 2-161 11-183 (212)
35 4hlc_A DTMP kinase, thymidylat 99.3 4.7E-11 1.6E-15 102.3 14.8 169 2-180 3-199 (205)
36 1nn5_A Similar to deoxythymidy 99.3 7.9E-12 2.7E-16 106.7 8.9 150 3-161 11-184 (215)
37 1bif_A 6-phosphofructo-2-kinas 99.3 3.7E-11 1.3E-15 115.4 14.1 119 3-121 41-170 (469)
38 4tmk_A Protein (thymidylate ki 99.3 1.9E-10 6.6E-15 99.1 17.0 154 2-161 4-190 (213)
39 3sr0_A Adenylate kinase; phosp 99.3 1.8E-11 6.1E-16 105.0 10.4 113 2-123 1-125 (206)
40 3hjn_A DTMP kinase, thymidylat 99.3 6.4E-11 2.2E-15 100.8 13.7 152 2-161 1-175 (197)
41 3vaa_A Shikimate kinase, SK; s 99.3 3E-12 1E-16 108.8 4.8 111 1-122 25-139 (199)
42 3cm0_A Adenylate kinase; ATP-b 99.2 6.3E-11 2.2E-15 98.9 12.4 118 2-123 5-127 (186)
43 2pez_A Bifunctional 3'-phospho 99.2 8.9E-11 3.1E-15 97.7 13.0 117 2-122 6-125 (179)
44 2gks_A Bifunctional SAT/APS ki 99.2 1.3E-11 4.6E-16 120.5 8.8 114 2-120 373-488 (546)
45 3tlx_A Adenylate kinase 2; str 99.2 4.9E-11 1.7E-15 104.7 11.5 110 2-123 30-157 (243)
46 3be4_A Adenylate kinase; malar 99.2 2.8E-11 9.5E-16 104.2 9.8 118 1-124 5-134 (217)
47 1p5z_B DCK, deoxycytidine kina 99.2 4E-12 1.4E-16 112.8 4.1 61 101-161 174-242 (263)
48 3lv8_A DTMP kinase, thymidylat 99.2 2.6E-10 8.8E-15 99.8 15.1 154 2-161 28-212 (236)
49 1aky_A Adenylate kinase; ATP:A 99.2 7.3E-12 2.5E-16 107.9 5.1 119 1-124 4-134 (220)
50 3trf_A Shikimate kinase, SK; a 99.2 8.1E-12 2.8E-16 104.4 5.1 106 1-119 5-115 (185)
51 3dl0_A Adenylate kinase; phosp 99.2 1.1E-10 3.6E-15 100.1 11.8 114 3-122 2-127 (216)
52 3fb4_A Adenylate kinase; psych 99.2 1.2E-10 4.2E-15 99.6 11.7 111 3-122 2-127 (216)
53 2xb4_A Adenylate kinase; ATP-b 99.2 9.8E-11 3.3E-15 101.3 10.7 113 3-124 2-128 (223)
54 3v9p_A DTMP kinase, thymidylat 99.2 3.9E-11 1.3E-15 104.4 8.1 156 2-161 26-210 (227)
55 1ukz_A Uridylate kinase; trans 99.2 3.5E-11 1.2E-15 102.1 7.6 113 1-124 15-143 (203)
56 3umf_A Adenylate kinase; rossm 99.2 4E-11 1.4E-15 103.6 7.8 120 2-124 30-155 (217)
57 1zak_A Adenylate kinase; ATP:A 99.1 1.7E-11 5.7E-16 105.8 3.8 119 1-123 5-130 (222)
58 2iyv_A Shikimate kinase, SK; t 99.1 2.7E-11 9.2E-16 101.2 5.0 156 2-182 3-165 (184)
59 1via_A Shikimate kinase; struc 99.1 1.3E-11 4.4E-16 102.5 1.9 108 1-123 4-114 (175)
60 3ld9_A DTMP kinase, thymidylat 99.1 8E-10 2.7E-14 95.8 12.4 168 2-179 22-216 (223)
61 1e6c_A Shikimate kinase; phosp 99.1 5.4E-11 1.8E-15 98.1 4.2 108 1-122 2-116 (173)
62 1kht_A Adenylate kinase; phosp 99.1 6E-10 2.1E-14 93.0 10.2 121 2-124 4-140 (192)
63 3iij_A Coilin-interacting nucl 99.1 2.4E-11 8.3E-16 101.2 1.4 102 2-123 12-118 (180)
64 1ak2_A Adenylate kinase isoenz 99.1 9.7E-11 3.3E-15 101.9 5.0 118 1-124 16-145 (233)
65 2ocp_A DGK, deoxyguanosine kin 99.1 3.2E-10 1.1E-14 99.1 8.3 80 101-181 149-236 (241)
66 2v54_A DTMP kinase, thymidylat 99.0 1.5E-09 5E-14 91.8 11.2 148 2-161 5-174 (204)
67 3cr8_A Sulfate adenylyltranfer 99.0 2.6E-09 9E-14 104.2 14.1 168 2-181 370-539 (552)
68 1zd8_A GTP:AMP phosphotransfer 99.0 1.1E-10 3.8E-15 101.0 3.4 112 1-123 7-129 (227)
69 2bdt_A BH3686; alpha-beta prot 99.0 5.4E-09 1.8E-13 87.5 13.3 161 2-181 3-169 (189)
70 1e4v_A Adenylate kinase; trans 99.0 2.7E-09 9.3E-14 91.3 11.6 112 3-123 2-124 (214)
71 2pt5_A Shikimate kinase, SK; a 99.0 8.1E-11 2.8E-15 96.6 1.3 107 3-123 2-114 (168)
72 1uj2_A Uridine-cytidine kinase 99.0 4.1E-09 1.4E-13 92.7 11.8 115 1-123 22-172 (252)
73 2qt1_A Nicotinamide riboside k 99.0 2.3E-09 7.9E-14 91.2 9.8 110 1-124 21-152 (207)
74 1zuh_A Shikimate kinase; alpha 98.9 1.8E-10 6.3E-15 94.7 2.3 107 1-122 7-117 (168)
75 3r20_A Cytidylate kinase; stru 98.9 8.4E-10 2.9E-14 96.3 6.3 26 3-28 11-36 (233)
76 4gp7_A Metallophosphoesterase; 98.9 3.8E-08 1.3E-12 81.4 15.5 131 2-144 10-140 (171)
77 1gtv_A TMK, thymidylate kinase 98.9 4.6E-10 1.6E-14 95.6 3.4 167 3-181 2-209 (214)
78 4e22_A Cytidylate kinase; P-lo 98.9 1.9E-09 6.5E-14 95.0 7.0 27 2-28 28-54 (252)
79 2f6r_A COA synthase, bifunctio 98.9 3.4E-09 1.2E-13 95.0 7.8 41 74-123 181-221 (281)
80 2qor_A Guanylate kinase; phosp 98.9 2.4E-08 8.1E-13 84.8 12.6 116 2-124 13-149 (204)
81 1kag_A SKI, shikimate kinase I 98.8 7.9E-10 2.7E-14 91.1 2.6 110 2-124 5-119 (173)
82 3tmk_A Thymidylate kinase; pho 98.8 4.4E-09 1.5E-13 90.7 7.0 148 2-159 6-183 (216)
83 1y63_A LMAJ004144AAA protein; 98.8 7E-09 2.4E-13 86.7 6.8 103 2-123 11-122 (184)
84 3nwj_A ATSK2; P loop, shikimat 98.8 3E-09 1E-13 93.8 4.4 112 2-122 49-162 (250)
85 3gmt_A Adenylate kinase; ssgci 98.8 1.2E-08 4.1E-13 88.6 8.0 118 3-124 10-133 (230)
86 3fdi_A Uncharacterized protein 98.8 1.6E-08 5.4E-13 86.2 8.6 30 2-31 7-36 (201)
87 3ake_A Cytidylate kinase; CMP 98.8 1.3E-08 4.5E-13 86.0 8.1 28 1-28 1-29 (208)
88 1cke_A CK, MSSA, protein (cyti 98.8 1.1E-08 3.8E-13 87.9 7.5 27 2-28 6-32 (227)
89 2if2_A Dephospho-COA kinase; a 98.8 3.1E-09 1.1E-13 90.0 3.3 26 1-27 1-26 (204)
90 1jjv_A Dephospho-COA kinase; P 98.7 7.1E-09 2.4E-13 88.0 5.2 26 1-27 2-27 (206)
91 3hdt_A Putative kinase; struct 98.7 3E-08 1E-12 85.9 8.9 29 2-30 15-43 (223)
92 1p6x_A Thymidine kinase; P-loo 98.7 3.1E-08 1.1E-12 90.7 9.2 139 2-144 8-199 (334)
93 4i1u_A Dephospho-COA kinase; s 98.7 2E-08 6.7E-13 86.1 6.6 113 1-123 9-153 (210)
94 1rz3_A Hypothetical protein rb 98.7 2.3E-08 7.9E-13 84.8 7.1 111 2-123 23-165 (201)
95 3tr0_A Guanylate kinase, GMP k 98.7 4.4E-07 1.5E-11 76.4 13.9 114 2-124 8-141 (205)
96 1zp6_A Hypothetical protein AT 98.7 6E-07 2.1E-11 74.8 14.3 159 2-180 10-174 (191)
97 2grj_A Dephospho-COA kinase; T 98.6 4.8E-08 1.7E-12 82.6 7.3 27 2-28 13-39 (192)
98 3a8t_A Adenylate isopentenyltr 98.6 1.9E-07 6.6E-12 85.4 11.7 134 2-143 41-212 (339)
99 1vht_A Dephospho-COA kinase; s 98.6 4.2E-08 1.4E-12 84.0 6.7 25 2-27 5-29 (218)
100 2vp4_A Deoxynucleoside kinase; 98.6 1.6E-08 5.4E-13 87.7 3.6 62 100-161 145-208 (230)
101 2j41_A Guanylate kinase; GMP, 98.6 1.8E-07 6.2E-12 78.8 10.1 23 3-25 8-30 (207)
102 1uf9_A TT1252 protein; P-loop, 98.6 1.9E-08 6.6E-13 84.6 2.4 24 1-24 8-31 (203)
103 3crm_A TRNA delta(2)-isopenten 98.5 4.3E-07 1.5E-11 82.7 11.1 27 1-27 4-31 (323)
104 3tau_A Guanylate kinase, GMP k 98.5 3.1E-07 1.1E-11 78.2 8.5 114 2-124 9-143 (208)
105 3tqc_A Pantothenate kinase; bi 98.5 6.6E-07 2.3E-11 81.5 10.7 118 3-123 94-248 (321)
106 3a00_A Guanylate kinase, GMP k 98.5 1.3E-06 4.5E-11 72.8 11.5 113 3-124 3-137 (186)
107 1ex7_A Guanylate kinase; subst 98.5 4.5E-07 1.5E-11 76.2 8.6 114 3-124 3-137 (186)
108 3czq_A Putative polyphosphate 98.5 1.7E-06 5.8E-11 77.8 12.8 107 2-124 87-213 (304)
109 2h92_A Cytidylate kinase; ross 98.5 3.5E-07 1.2E-11 78.1 7.8 26 3-28 5-30 (219)
110 1q3t_A Cytidylate kinase; nucl 98.4 6.5E-07 2.2E-11 77.6 8.8 27 2-28 17-43 (236)
111 1e2k_A Thymidine kinase; trans 98.4 1E-06 3.5E-11 80.5 9.5 138 2-144 5-196 (331)
112 2bbw_A Adenylate kinase 4, AK4 98.4 3E-07 1E-11 80.3 5.7 27 2-28 28-54 (246)
113 1a7j_A Phosphoribulokinase; tr 98.4 1.1E-06 3.7E-11 79.0 8.9 27 2-28 6-32 (290)
114 1of1_A Thymidine kinase; trans 98.4 1.9E-06 6.6E-11 79.8 10.6 138 2-144 50-241 (376)
115 1osn_A Thymidine kinase, VZV-T 98.3 2.5E-06 8.5E-11 78.2 9.6 139 2-144 13-208 (341)
116 1s96_A Guanylate kinase, GMP k 98.2 1.9E-05 6.5E-10 67.9 13.5 114 3-123 18-151 (219)
117 3ch4_B Pmkase, phosphomevalona 98.2 3.5E-06 1.2E-10 71.4 8.5 113 1-120 11-145 (202)
118 3c8u_A Fructokinase; YP_612366 98.2 9.8E-06 3.4E-10 68.7 10.5 26 2-27 23-48 (208)
119 3exa_A TRNA delta(2)-isopenten 98.2 1.4E-05 4.9E-10 72.2 11.5 26 2-27 4-29 (322)
120 3d3q_A TRNA delta(2)-isopenten 98.1 4.9E-05 1.7E-09 69.5 13.6 25 3-27 9-33 (340)
121 3foz_A TRNA delta(2)-isopenten 98.1 5.2E-05 1.8E-09 68.4 13.6 26 2-27 11-36 (316)
122 1sq5_A Pantothenate kinase; P- 98.1 6.9E-06 2.4E-10 74.2 7.9 25 2-26 81-105 (308)
123 2ga8_A Hypothetical 39.9 kDa p 98.1 2.9E-05 9.9E-10 71.4 11.5 26 2-27 25-50 (359)
124 3asz_A Uridine kinase; cytidin 98.1 9E-06 3.1E-10 68.8 7.6 25 2-26 7-31 (211)
125 2jeo_A Uridine-cytidine kinase 98.0 3.8E-05 1.3E-09 66.8 11.0 27 2-28 26-52 (245)
126 3czp_A Putative polyphosphate 98.0 2E-05 6.7E-10 75.8 9.4 164 2-181 44-235 (500)
127 1kgd_A CASK, peripheral plasma 98.0 1.1E-05 3.6E-10 67.0 6.5 24 3-26 7-30 (180)
128 3lnc_A Guanylate kinase, GMP k 97.9 3.4E-05 1.2E-09 66.3 8.9 24 2-25 28-52 (231)
129 1g8f_A Sulfate adenylyltransfe 97.9 3E-05 1E-09 74.7 9.2 26 2-27 396-421 (511)
130 3aez_A Pantothenate kinase; tr 97.9 3.3E-05 1.1E-09 70.0 8.5 25 3-27 92-116 (312)
131 3rhf_A Putative polyphosphate 97.9 0.00018 6.1E-09 63.9 12.9 138 3-161 77-248 (289)
132 3czp_A Putative polyphosphate 97.9 4.2E-05 1.4E-09 73.5 9.1 109 2-125 301-428 (500)
133 3ney_A 55 kDa erythrocyte memb 97.8 9.7E-05 3.3E-09 62.4 9.6 24 3-26 21-44 (197)
134 3eph_A TRNA isopentenyltransfe 97.7 0.00011 3.7E-09 68.7 9.3 26 2-27 3-28 (409)
135 3bos_A Putative DNA replicatio 97.7 0.00016 5.4E-09 61.6 8.9 27 2-28 53-79 (242)
136 3dm5_A SRP54, signal recogniti 97.6 0.00035 1.2E-08 66.1 11.8 104 2-111 101-223 (443)
137 4b4t_J 26S protease regulatory 97.6 0.00026 9E-09 66.1 10.3 25 4-28 185-209 (405)
138 1xjc_A MOBB protein homolog; s 97.6 4.6E-05 1.6E-09 62.8 4.7 29 1-29 4-32 (169)
139 2chg_A Replication factor C sm 97.6 0.00048 1.6E-08 57.4 10.8 96 3-109 40-139 (226)
140 3syl_A Protein CBBX; photosynt 97.6 0.00091 3.1E-08 59.5 13.0 97 3-110 69-177 (309)
141 3kl4_A SRP54, signal recogniti 97.5 0.00042 1.4E-08 65.4 10.6 107 2-111 98-222 (433)
142 2j37_W Signal recognition part 97.5 0.00043 1.5E-08 66.6 10.8 37 2-40 102-138 (504)
143 2kjq_A DNAA-related protein; s 97.5 0.00083 2.8E-08 53.9 10.0 34 3-38 38-71 (149)
144 1np6_A Molybdopterin-guanine d 97.5 0.00012 4.1E-09 60.6 5.1 28 1-28 6-33 (174)
145 4b4t_H 26S protease regulatory 97.4 0.00056 1.9E-08 64.9 10.0 25 4-28 246-270 (467)
146 4b4t_K 26S protease regulatory 97.4 0.00079 2.7E-08 63.5 10.7 25 4-28 209-233 (428)
147 3eie_A Vacuolar protein sortin 97.4 0.0014 4.8E-08 59.1 11.8 26 3-28 53-78 (322)
148 4b4t_L 26S protease subunit RP 97.4 0.00035 1.2E-08 66.1 7.8 25 4-28 218-242 (437)
149 3hr8_A Protein RECA; alpha and 97.3 0.0018 6.1E-08 59.6 11.6 37 2-40 62-98 (356)
150 1iqp_A RFCS; clamp loader, ext 97.3 0.00082 2.8E-08 60.0 9.0 26 2-27 47-72 (327)
151 2cvh_A DNA repair and recombin 97.3 0.0016 5.3E-08 54.7 10.1 32 3-39 22-53 (220)
152 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.0024 8.2E-08 57.7 11.9 23 3-25 47-69 (322)
153 2qp9_X Vacuolar protein sortin 97.3 0.0035 1.2E-07 57.4 13.2 24 4-27 87-110 (355)
154 1dek_A Deoxynucleoside monopho 97.3 0.00017 5.8E-09 62.9 3.8 27 1-27 1-27 (241)
155 2px0_A Flagellar biosynthesis 97.2 0.0041 1.4E-07 55.7 12.9 38 3-41 107-144 (296)
156 4b4t_I 26S protease regulatory 97.2 0.00058 2E-08 64.2 7.4 25 4-28 219-243 (437)
157 1j8m_F SRP54, signal recogniti 97.2 0.0031 1.1E-07 56.5 11.9 37 2-40 99-135 (297)
158 4b4t_M 26S protease regulatory 97.2 0.00045 1.5E-08 65.2 6.5 26 3-28 217-242 (434)
159 1l8q_A Chromosomal replication 97.2 0.0028 9.6E-08 56.9 11.7 34 3-38 39-72 (324)
160 2dyk_A GTP-binding protein; GT 97.2 0.0012 4E-08 52.3 8.2 24 1-24 1-24 (161)
161 2v1u_A Cell division control p 97.2 0.0036 1.2E-07 57.0 12.0 25 3-27 46-70 (387)
162 1sxj_B Activator 1 37 kDa subu 97.2 0.00086 2.9E-08 59.7 7.6 110 2-122 43-157 (323)
163 2z4s_A Chromosomal replication 97.1 0.00078 2.7E-08 63.8 7.5 36 3-38 132-167 (440)
164 3cf2_A TER ATPase, transitiona 97.1 0.00053 1.8E-08 69.5 6.1 26 3-28 240-265 (806)
165 2zr9_A Protein RECA, recombina 97.1 0.0033 1.1E-07 57.6 10.9 35 3-39 63-97 (349)
166 3u61_B DNA polymerase accessor 97.1 0.0014 4.9E-08 58.8 8.3 94 3-113 50-147 (324)
167 3vfd_A Spastin; ATPase, microt 97.1 0.0067 2.3E-07 56.1 13.1 25 3-27 150-174 (389)
168 2f1r_A Molybdopterin-guanine d 97.1 0.00021 7.2E-09 58.9 2.4 38 1-38 2-39 (171)
169 3ec2_A DNA replication protein 97.1 0.00031 1E-08 57.7 3.3 24 3-26 40-63 (180)
170 2v3c_C SRP54, signal recogniti 97.0 0.0014 4.8E-08 61.9 8.1 36 3-40 101-136 (432)
171 1sxj_C Activator 1 40 kDa subu 97.0 0.002 6.9E-08 58.4 8.9 25 3-27 48-72 (340)
172 1d2n_A N-ethylmaleimide-sensit 97.0 0.0016 5.3E-08 57.1 7.9 25 3-27 66-90 (272)
173 1odf_A YGR205W, hypothetical 3 97.0 0.00042 1.4E-08 62.0 4.0 26 2-27 32-57 (290)
174 1jbk_A CLPB protein; beta barr 97.0 0.00042 1.4E-08 56.4 3.6 25 3-27 45-69 (195)
175 1ye8_A Protein THEP1, hypothet 96.9 0.00052 1.8E-08 56.8 3.7 24 3-26 2-25 (178)
176 2w58_A DNAI, primosome compone 96.9 0.00073 2.5E-08 56.4 4.6 27 2-28 55-81 (202)
177 3te6_A Regulatory protein SIR3 96.9 0.0099 3.4E-07 53.7 12.4 26 2-27 46-71 (318)
178 2xxa_A Signal recognition part 96.9 0.018 6E-07 54.3 14.5 38 2-40 101-138 (433)
179 1sxj_E Activator 1 40 kDa subu 96.9 0.0042 1.5E-07 56.2 9.9 25 2-26 37-61 (354)
180 2r2a_A Uncharacterized protein 96.9 0.0005 1.7E-08 58.1 3.4 24 1-24 5-28 (199)
181 3e70_C DPA, signal recognition 96.9 0.005 1.7E-07 55.9 10.1 34 3-38 131-164 (328)
182 3t15_A Ribulose bisphosphate c 96.9 0.0006 2E-08 60.9 3.8 25 3-27 38-62 (293)
183 1xp8_A RECA protein, recombina 96.9 0.0068 2.3E-07 55.9 10.9 36 3-40 76-111 (366)
184 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.0046 1.6E-07 56.0 9.5 23 2-24 124-146 (331)
185 1lv7_A FTSH; alpha/beta domain 96.8 0.00062 2.1E-08 59.2 3.6 25 3-27 47-71 (257)
186 1lvg_A Guanylate kinase, GMP k 96.8 0.00058 2E-08 57.3 3.2 24 3-26 6-29 (198)
187 2p65_A Hypothetical protein PF 96.8 0.00048 1.6E-08 55.9 2.6 25 3-27 45-69 (187)
188 2gza_A Type IV secretion syste 96.8 0.008 2.8E-07 55.2 11.2 133 3-140 177-319 (361)
189 1svi_A GTP-binding protein YSX 96.8 0.0049 1.7E-07 50.4 8.8 22 2-23 24-45 (195)
190 4dzz_A Plasmid partitioning pr 96.8 0.014 4.8E-07 48.3 11.7 38 1-40 1-39 (206)
191 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.00068 2.3E-08 58.7 3.6 25 3-27 41-65 (262)
192 2x8a_A Nuclear valosin-contain 96.8 0.00067 2.3E-08 60.0 3.4 24 4-27 47-70 (274)
193 4a1f_A DNAB helicase, replicat 96.8 0.0032 1.1E-07 57.5 7.9 35 3-39 48-82 (338)
194 2zan_A Vacuolar protein sortin 96.8 0.0073 2.5E-07 57.1 10.7 23 3-25 169-191 (444)
195 2qmh_A HPR kinase/phosphorylas 96.7 0.00068 2.3E-08 57.2 3.0 25 2-26 35-59 (205)
196 1tue_A Replication protein E1; 96.7 0.0006 2E-08 57.9 2.6 24 3-26 60-83 (212)
197 3h4m_A Proteasome-activating n 96.7 0.00075 2.6E-08 59.4 3.3 25 3-27 53-77 (285)
198 3jvv_A Twitching mobility prot 96.7 0.0056 1.9E-07 56.3 9.2 25 3-27 125-149 (356)
199 3lda_A DNA repair protein RAD5 96.7 0.0063 2.2E-07 56.8 9.6 22 3-24 180-201 (400)
200 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0015 5.1E-08 55.2 4.8 34 3-38 25-58 (235)
201 1vma_A Cell division protein F 96.7 0.0015 5.2E-08 58.8 5.1 36 2-39 105-140 (306)
202 3cf0_A Transitional endoplasmi 96.7 0.00085 2.9E-08 60.0 3.3 25 3-27 51-75 (301)
203 3b9p_A CG5977-PA, isoform A; A 96.7 0.00085 2.9E-08 59.5 3.3 25 3-27 56-80 (297)
204 1yrb_A ATP(GTP)binding protein 96.7 0.002 6.8E-08 55.8 5.6 35 2-39 15-49 (262)
205 1njg_A DNA polymerase III subu 96.7 0.0011 3.6E-08 55.9 3.7 25 3-27 47-71 (250)
206 2z43_A DNA repair and recombin 96.7 0.0069 2.4E-07 54.7 9.3 38 3-40 109-150 (324)
207 1ixz_A ATP-dependent metallopr 96.7 0.00093 3.2E-08 57.9 3.4 23 4-26 52-74 (254)
208 1hqc_A RUVB; extended AAA-ATPa 96.7 0.0056 1.9E-07 54.6 8.6 65 3-87 40-104 (324)
209 2ffh_A Protein (FFH); SRP54, s 96.7 0.006 2E-07 57.4 9.1 37 2-40 99-135 (425)
210 3pvs_A Replication-associated 96.6 0.0037 1.3E-07 59.3 7.6 26 2-27 51-76 (447)
211 1in4_A RUVB, holliday junction 96.6 0.001 3.5E-08 60.4 3.6 25 3-27 53-77 (334)
212 2wsm_A Hydrogenase expression/ 96.6 0.0014 4.7E-08 55.3 4.1 27 1-27 30-56 (221)
213 2dr3_A UPF0273 protein PH0284; 96.6 0.0018 6.3E-08 55.3 4.9 34 3-38 25-58 (247)
214 3n70_A Transport activator; si 96.6 0.0011 3.9E-08 52.5 3.3 23 4-26 27-49 (145)
215 1c9k_A COBU, adenosylcobinamid 96.6 0.00089 3E-08 55.6 2.7 22 3-24 1-22 (180)
216 3p32_A Probable GTPase RV1496/ 96.6 0.002 7E-08 59.0 5.2 35 2-38 80-114 (355)
217 2orw_A Thymidine kinase; TMTK, 96.6 0.002 7E-08 53.4 4.7 25 3-27 5-29 (184)
218 3pqc_A Probable GTP-binding pr 96.6 0.011 3.7E-07 48.1 9.1 23 2-24 24-46 (195)
219 1ofh_A ATP-dependent HSL prote 96.5 0.0013 4.6E-08 58.2 3.6 24 4-27 53-76 (310)
220 3m6a_A ATP-dependent protease 96.5 0.0032 1.1E-07 61.2 6.4 26 2-27 109-134 (543)
221 4fcw_A Chaperone protein CLPB; 96.5 0.0018 6.3E-08 57.5 4.2 25 3-27 49-73 (311)
222 4a74_A DNA repair and recombin 96.5 0.0014 4.9E-08 55.4 3.3 23 3-25 27-49 (231)
223 3hws_A ATP-dependent CLP prote 96.5 0.0014 4.7E-08 60.1 3.4 25 3-27 53-77 (363)
224 2ehv_A Hypothetical protein PH 96.5 0.0015 5.1E-08 56.0 3.3 21 3-23 32-52 (251)
225 1iy2_A ATP-dependent metallopr 96.5 0.0015 5.1E-08 57.5 3.4 23 4-26 76-98 (278)
226 1znw_A Guanylate kinase, GMP k 96.5 0.0016 5.6E-08 54.7 3.4 24 3-26 22-45 (207)
227 1fnn_A CDC6P, cell division co 96.5 0.0017 5.7E-08 59.4 3.8 27 1-27 44-70 (389)
228 1z6g_A Guanylate kinase; struc 96.5 0.0013 4.5E-08 56.0 2.9 23 3-25 25-47 (218)
229 2gno_A DNA polymerase III, gam 96.5 0.015 5.2E-07 52.1 10.0 131 1-142 18-152 (305)
230 1zu4_A FTSY; GTPase, signal re 96.4 0.003 1E-07 57.2 5.4 37 2-40 106-142 (320)
231 2r62_A Cell division protease 96.4 0.00083 2.8E-08 58.6 1.5 25 4-28 47-71 (268)
232 1a5t_A Delta prime, HOLB; zinc 96.4 0.014 4.9E-07 52.7 9.8 26 3-28 26-51 (334)
233 3uk6_A RUVB-like 2; hexameric 96.4 0.0018 6E-08 59.1 3.5 25 3-27 72-96 (368)
234 1g41_A Heat shock protein HSLU 96.4 0.0018 6.1E-08 61.3 3.4 25 3-27 52-76 (444)
235 1nij_A Hypothetical protein YJ 96.3 0.0016 5.4E-08 58.9 2.9 25 1-25 4-28 (318)
236 3hu3_A Transitional endoplasmi 96.3 0.0039 1.3E-07 59.8 5.7 25 3-27 240-264 (489)
237 1cp2_A CP2, nitrogenase iron p 96.3 0.0038 1.3E-07 54.4 5.2 38 1-40 1-38 (269)
238 1svm_A Large T antigen; AAA+ f 96.3 0.0022 7.6E-08 59.4 3.8 25 3-27 171-195 (377)
239 1um8_A ATP-dependent CLP prote 96.3 0.0019 6.5E-08 59.4 3.4 25 3-27 74-98 (376)
240 2b8t_A Thymidine kinase; deoxy 96.3 0.0035 1.2E-07 53.8 4.8 34 2-37 13-46 (223)
241 1rj9_A FTSY, signal recognitio 96.3 0.0039 1.3E-07 56.0 5.3 35 3-39 104-138 (304)
242 2qgz_A Helicase loader, putati 96.3 0.003 1E-07 56.8 4.6 33 3-37 154-187 (308)
243 2c9o_A RUVB-like 1; hexameric 96.3 0.002 7E-08 61.1 3.6 24 3-26 65-88 (456)
244 2afh_E Nitrogenase iron protei 96.3 0.0038 1.3E-07 55.2 5.1 38 1-40 2-39 (289)
245 1cr0_A DNA primase/helicase; R 96.3 0.0024 8.3E-08 56.6 3.8 35 3-38 37-71 (296)
246 2www_A Methylmalonic aciduria 96.3 0.0037 1.3E-07 57.2 5.0 26 2-27 75-100 (349)
247 2q6t_A DNAB replication FORK h 96.2 0.031 1.1E-06 52.6 11.4 36 3-39 202-237 (444)
248 1n0w_A DNA repair protein RAD5 96.2 0.0024 8.3E-08 54.4 3.3 22 3-24 26-47 (243)
249 1mky_A Probable GTP-binding pr 96.2 0.011 3.6E-07 55.8 8.0 108 1-112 1-122 (439)
250 4dhe_A Probable GTP-binding pr 96.2 0.0057 2E-07 51.3 5.6 23 2-24 30-52 (223)
251 3pfi_A Holliday junction ATP-d 96.2 0.0025 8.4E-08 57.5 3.4 25 3-27 57-81 (338)
252 2eyu_A Twitching motility prot 96.2 0.0029 1E-07 55.5 3.8 25 3-27 27-51 (261)
253 2hf9_A Probable hydrogenase ni 96.2 0.0036 1.2E-07 52.9 4.1 26 1-26 38-63 (226)
254 2bjv_A PSP operon transcriptio 96.2 0.0031 1.1E-07 54.9 3.8 24 4-27 32-55 (265)
255 3d8b_A Fidgetin-like protein 1 96.2 0.0026 8.8E-08 58.3 3.4 25 3-27 119-143 (357)
256 3cf2_A TER ATPase, transitiona 96.2 0.005 1.7E-07 62.4 5.7 25 4-28 514-538 (806)
257 3b9q_A Chloroplast SRP recepto 96.2 0.0049 1.7E-07 55.3 5.2 35 2-38 101-135 (302)
258 1sxj_D Activator 1 41 kDa subu 96.2 0.0027 9.4E-08 57.3 3.5 25 3-27 60-84 (353)
259 2zts_A Putative uncharacterize 96.2 0.0044 1.5E-07 52.9 4.6 35 3-38 32-66 (251)
260 2i3b_A HCR-ntpase, human cance 96.1 0.0029 9.8E-08 52.9 3.2 24 3-26 3-26 (189)
261 1htw_A HI0065; nucleotide-bind 96.1 0.0035 1.2E-07 50.8 3.6 23 3-25 35-57 (158)
262 3bh0_A DNAB-like replicative h 96.1 0.0052 1.8E-07 55.4 5.0 34 3-38 70-103 (315)
263 2qby_B CDC6 homolog 3, cell di 96.1 0.0031 1.1E-07 57.6 3.6 24 3-26 47-70 (384)
264 1u94_A RECA protein, recombina 96.1 0.0055 1.9E-07 56.3 5.0 35 3-39 65-99 (356)
265 3co5_A Putative two-component 96.0 0.0019 6.4E-08 51.1 1.5 22 4-25 30-51 (143)
266 2qby_A CDC6 homolog 1, cell di 96.0 0.0048 1.6E-07 56.0 4.4 25 3-27 47-71 (386)
267 1nlf_A Regulatory protein REPA 96.0 0.0042 1.4E-07 54.7 3.8 24 3-26 32-55 (279)
268 2v9p_A Replication protein E1; 96.0 0.0042 1.4E-07 55.9 3.8 23 3-25 128-150 (305)
269 2r44_A Uncharacterized protein 96.0 0.0024 8.1E-08 57.6 2.2 24 4-27 49-72 (331)
270 2chq_A Replication factor C sm 96.0 0.0034 1.2E-07 55.7 3.1 25 2-26 39-63 (319)
271 1sxj_A Activator 1 95 kDa subu 96.0 0.0035 1.2E-07 60.4 3.4 26 2-27 78-103 (516)
272 3tqf_A HPR(Ser) kinase; transf 96.0 0.0035 1.2E-07 51.7 2.8 22 3-24 18-39 (181)
273 1g8p_A Magnesium-chelatase 38 96.0 0.0022 7.4E-08 58.0 1.7 24 4-27 48-71 (350)
274 2p67_A LAO/AO transport system 96.0 0.0061 2.1E-07 55.5 4.8 27 2-28 57-83 (341)
275 1wf3_A GTP-binding protein; GT 95.9 0.036 1.2E-06 49.5 9.7 21 3-23 9-29 (301)
276 1p9r_A General secretion pathw 95.9 0.0071 2.4E-07 56.8 5.2 35 3-39 169-203 (418)
277 2og2_A Putative signal recogni 95.9 0.0075 2.6E-07 55.5 5.2 34 3-38 159-192 (359)
278 1jr3_A DNA polymerase III subu 95.9 0.0047 1.6E-07 56.1 3.8 25 3-27 40-64 (373)
279 2yhs_A FTSY, cell division pro 95.9 0.0079 2.7E-07 57.6 5.4 34 3-38 295-328 (503)
280 3iby_A Ferrous iron transport 95.9 0.0041 1.4E-07 54.4 3.1 24 1-24 1-24 (256)
281 3end_A Light-independent proto 95.9 0.0082 2.8E-07 53.5 5.1 38 1-40 41-78 (307)
282 2ce7_A Cell division protein F 95.9 0.0045 1.5E-07 59.1 3.6 24 4-27 52-75 (476)
283 1ypw_A Transitional endoplasmi 95.9 0.011 3.9E-07 60.0 6.7 25 3-27 240-264 (806)
284 1ls1_A Signal recognition part 95.9 0.0081 2.8E-07 53.6 5.0 36 2-39 99-134 (295)
285 2qm8_A GTPase/ATPase; G protei 95.8 0.0076 2.6E-07 54.9 4.7 26 2-27 56-81 (337)
286 3lxx_A GTPase IMAP family memb 95.8 0.026 8.9E-07 48.1 7.8 22 2-23 30-51 (239)
287 2r8r_A Sensor protein; KDPD, P 95.8 0.0084 2.9E-07 51.5 4.5 34 3-38 8-41 (228)
288 1hyq_A MIND, cell division inh 95.8 0.15 5.1E-06 43.8 12.8 37 2-40 3-40 (263)
289 3io5_A Recombination and repai 95.8 0.0096 3.3E-07 53.8 5.0 38 3-40 30-67 (333)
290 2wji_A Ferrous iron transport 95.7 0.0069 2.4E-07 48.5 3.7 22 2-23 4-25 (165)
291 4dcu_A GTP-binding protein ENG 95.7 0.024 8.1E-07 53.7 8.0 109 2-112 24-143 (456)
292 3cmw_A Protein RECA, recombina 95.7 0.067 2.3E-06 58.3 12.2 35 3-39 734-768 (1706)
293 3kjh_A CO dehydrogenase/acetyl 95.7 0.0067 2.3E-07 51.8 3.8 37 1-40 1-37 (254)
294 2hjg_A GTP-binding protein ENG 95.7 0.011 3.8E-07 55.6 5.6 22 2-23 4-25 (436)
295 2ewv_A Twitching motility prot 95.7 0.006 2E-07 56.4 3.7 25 3-27 138-162 (372)
296 3cmw_A Protein RECA, recombina 95.7 0.077 2.6E-06 57.8 12.6 36 3-40 385-420 (1706)
297 3tif_A Uncharacterized ABC tra 95.7 0.0049 1.7E-07 53.2 2.8 23 3-25 33-55 (235)
298 1xx6_A Thymidine kinase; NESG, 95.7 0.011 3.7E-07 49.4 4.9 34 2-37 9-42 (191)
299 1qvr_A CLPB protein; coiled co 95.6 0.018 6.3E-07 58.8 7.3 25 3-27 193-217 (854)
300 2pcj_A ABC transporter, lipopr 95.6 0.0053 1.8E-07 52.5 2.7 23 3-25 32-54 (224)
301 2dhr_A FTSH; AAA+ protein, hex 95.6 0.006 2E-07 58.6 3.3 23 4-26 67-89 (499)
302 3i8s_A Ferrous iron transport 95.6 0.085 2.9E-06 46.2 10.6 23 2-24 4-26 (274)
303 2onk_A Molybdate/tungstate ABC 95.6 0.0068 2.3E-07 52.5 3.3 24 3-26 26-49 (240)
304 3iev_A GTP-binding protein ERA 95.6 0.024 8.2E-07 50.7 7.1 21 3-23 12-32 (308)
305 1q57_A DNA primase/helicase; d 95.6 0.034 1.2E-06 53.2 8.6 36 3-39 244-279 (503)
306 3b85_A Phosphate starvation-in 95.6 0.0058 2E-07 51.8 2.8 22 3-24 24-45 (208)
307 1u0j_A DNA replication protein 95.6 0.0068 2.3E-07 53.4 3.2 24 3-26 106-129 (267)
308 1z2a_A RAS-related protein RAB 95.5 0.0076 2.6E-07 47.7 3.3 21 3-23 7-27 (168)
309 2r6a_A DNAB helicase, replicat 95.5 0.011 3.8E-07 55.9 4.9 36 3-39 205-240 (454)
310 2cbz_A Multidrug resistance-as 95.5 0.0061 2.1E-07 52.6 2.8 24 3-26 33-56 (237)
311 1v5w_A DMC1, meiotic recombina 95.5 0.014 4.7E-07 53.2 5.3 39 2-40 123-165 (343)
312 2cxx_A Probable GTP-binding pr 95.5 0.0071 2.4E-07 49.1 3.1 23 1-23 1-23 (190)
313 1pzn_A RAD51, DNA repair and r 95.5 0.007 2.4E-07 55.4 3.3 24 2-25 132-155 (349)
314 3bgw_A DNAB-like replicative h 95.5 0.012 4.1E-07 55.7 5.0 35 3-39 199-233 (444)
315 1lw7_A Transcriptional regulat 95.5 0.0066 2.3E-07 55.7 3.0 25 3-27 172-196 (365)
316 3pxg_A Negative regulator of g 95.5 0.0074 2.5E-07 57.4 3.4 25 3-27 203-227 (468)
317 1kao_A RAP2A; GTP-binding prot 95.4 0.0087 3E-07 47.1 3.3 21 3-23 5-25 (167)
318 1oix_A RAS-related protein RAB 95.4 0.0084 2.9E-07 49.4 3.2 23 3-25 31-53 (191)
319 4g1u_C Hemin import ATP-bindin 95.4 0.007 2.4E-07 53.3 2.8 23 3-25 39-61 (266)
320 3cmu_A Protein RECA, recombina 95.4 0.071 2.4E-06 58.9 11.1 36 3-40 385-420 (2050)
321 3gfo_A Cobalt import ATP-bindi 95.4 0.0071 2.4E-07 53.5 2.8 23 3-25 36-58 (275)
322 1nrj_B SR-beta, signal recogni 95.4 0.0094 3.2E-07 49.8 3.5 23 2-24 13-35 (218)
323 2d2e_A SUFC protein; ABC-ATPas 95.4 0.0088 3E-07 52.0 3.3 22 3-24 31-52 (250)
324 3iqw_A Tail-anchored protein t 95.4 0.016 5.5E-07 52.7 5.2 38 1-40 16-53 (334)
325 1u8z_A RAS-related protein RAL 95.4 0.0095 3.3E-07 46.9 3.3 21 3-23 6-26 (168)
326 3bfv_A CAPA1, CAPB2, membrane 95.4 0.016 5.5E-07 51.0 5.0 38 1-40 82-120 (271)
327 1mv5_A LMRA, multidrug resista 95.3 0.0077 2.6E-07 52.1 2.8 24 3-26 30-53 (243)
328 1r6b_X CLPA protein; AAA+, N-t 95.3 0.012 4.1E-07 59.3 4.6 25 3-27 209-233 (758)
329 2ff7_A Alpha-hemolysin translo 95.3 0.0078 2.7E-07 52.3 2.8 23 3-25 37-59 (247)
330 2f9l_A RAB11B, member RAS onco 95.3 0.0096 3.3E-07 49.2 3.3 22 3-24 7-28 (199)
331 2fna_A Conserved hypothetical 95.3 0.0095 3.2E-07 53.4 3.5 25 2-26 31-55 (357)
332 1b0u_A Histidine permease; ABC 95.3 0.0079 2.7E-07 52.7 2.8 23 3-25 34-56 (262)
333 3zq6_A Putative arsenical pump 95.3 0.019 6.4E-07 51.8 5.4 37 2-40 15-51 (324)
334 2pze_A Cystic fibrosis transme 95.3 0.0084 2.9E-07 51.5 2.8 24 3-26 36-59 (229)
335 1ji0_A ABC transporter; ATP bi 95.3 0.0084 2.9E-07 51.8 2.8 23 3-25 34-56 (240)
336 1g6h_A High-affinity branched- 95.3 0.0083 2.9E-07 52.4 2.8 23 3-25 35-57 (257)
337 1ek0_A Protein (GTP-binding pr 95.3 0.011 3.7E-07 46.8 3.3 21 3-23 5-25 (170)
338 2zu0_C Probable ATP-dependent 95.2 0.01 3.5E-07 52.2 3.3 22 3-24 48-69 (267)
339 2erx_A GTP-binding protein DI- 95.2 0.01 3.5E-07 47.0 3.1 21 3-23 5-25 (172)
340 2ce2_X GTPase HRAS; signaling 95.2 0.014 4.7E-07 45.8 3.8 22 3-24 5-26 (166)
341 3nbx_X ATPase RAVA; AAA+ ATPas 95.2 0.0051 1.7E-07 59.1 1.4 23 4-26 44-66 (500)
342 1c1y_A RAS-related protein RAP 95.2 0.011 3.8E-07 46.6 3.3 21 3-23 5-25 (167)
343 3cio_A ETK, tyrosine-protein k 95.2 0.018 6E-07 51.5 4.8 37 2-40 105-142 (299)
344 2nzj_A GTP-binding protein REM 95.2 0.01 3.6E-07 47.3 3.1 21 3-23 6-26 (175)
345 1z0j_A RAB-22, RAS-related pro 95.2 0.011 3.9E-07 46.8 3.3 22 3-24 8-29 (170)
346 2olj_A Amino acid ABC transpor 95.2 0.0088 3E-07 52.5 2.8 23 3-25 52-74 (263)
347 1ky3_A GTP-binding protein YPT 95.2 0.011 3.8E-07 47.3 3.3 21 3-23 10-30 (182)
348 1sgw_A Putative ABC transporte 95.2 0.0074 2.5E-07 51.4 2.2 23 3-25 37-59 (214)
349 2ged_A SR-beta, signal recogni 95.2 0.012 4.1E-07 48.0 3.5 23 2-24 49-71 (193)
350 1g16_A RAS-related protein SEC 95.2 0.011 3.8E-07 46.8 3.2 21 3-23 5-25 (170)
351 1wms_A RAB-9, RAB9, RAS-relate 95.2 0.011 3.9E-07 47.2 3.3 21 3-23 9-29 (177)
352 2ixe_A Antigen peptide transpo 95.2 0.0089 3.1E-07 52.7 2.8 23 3-25 47-69 (271)
353 2ghi_A Transport protein; mult 95.2 0.0091 3.1E-07 52.3 2.8 23 3-25 48-70 (260)
354 3q85_A GTP-binding protein REM 95.2 0.011 3.8E-07 46.9 3.1 20 3-22 4-23 (169)
355 3q72_A GTP-binding protein RAD 95.2 0.01 3.5E-07 47.0 2.9 20 3-22 4-23 (166)
356 1ojl_A Transcriptional regulat 95.2 0.011 3.6E-07 53.0 3.3 24 4-27 28-51 (304)
357 3e1s_A Exodeoxyribonuclease V, 95.2 0.017 5.7E-07 56.5 4.8 34 2-37 205-238 (574)
358 2gj8_A MNME, tRNA modification 95.1 0.011 3.8E-07 47.7 3.0 22 3-24 6-27 (172)
359 1vpl_A ABC transporter, ATP-bi 95.1 0.0097 3.3E-07 52.1 2.8 23 3-25 43-65 (256)
360 1z08_A RAS-related protein RAB 95.1 0.012 4.2E-07 46.6 3.2 21 3-23 8-28 (170)
361 3ug7_A Arsenical pump-driving 95.1 0.022 7.6E-07 52.0 5.3 37 2-40 27-63 (349)
362 2qi9_C Vitamin B12 import ATP- 95.1 0.01 3.4E-07 51.7 2.8 23 3-25 28-50 (249)
363 3con_A GTPase NRAS; structural 95.1 0.013 4.3E-07 47.7 3.3 22 3-24 23-44 (190)
364 1r2q_A RAS-related protein RAB 95.1 0.013 4.5E-07 46.3 3.3 21 3-23 8-28 (170)
365 2wjg_A FEOB, ferrous iron tran 95.1 0.015 5E-07 47.2 3.6 22 2-23 8-29 (188)
366 2yz2_A Putative ABC transporte 95.1 0.011 3.6E-07 52.1 2.8 23 3-25 35-57 (266)
367 3io3_A DEHA2D07832P; chaperone 95.1 0.021 7.2E-07 52.2 4.9 38 1-40 18-57 (348)
368 2fn4_A P23, RAS-related protei 95.1 0.013 4.5E-07 46.9 3.2 22 3-24 11-32 (181)
369 1z0f_A RAB14, member RAS oncog 95.0 0.014 4.6E-07 46.7 3.3 22 3-24 17-38 (179)
370 2zej_A Dardarin, leucine-rich 95.0 0.012 4E-07 48.0 2.9 21 3-23 4-24 (184)
371 3bc1_A RAS-related protein RAB 95.0 0.014 4.7E-07 47.3 3.3 21 3-23 13-33 (195)
372 2ihy_A ABC transporter, ATP-bi 95.0 0.011 3.7E-07 52.4 2.8 23 3-25 49-71 (279)
373 1upt_A ARL1, ADP-ribosylation 95.0 0.014 4.9E-07 46.3 3.3 21 3-23 9-29 (171)
374 3sop_A Neuronal-specific septi 95.0 0.014 4.8E-07 51.4 3.5 24 3-26 4-27 (270)
375 3tr5_A RF-3, peptide chain rel 95.0 0.098 3.4E-06 50.5 9.7 39 73-111 107-145 (528)
376 2pt7_A CAG-ALFA; ATPase, prote 95.0 0.0093 3.2E-07 54.1 2.3 25 3-27 173-197 (330)
377 2lkc_A Translation initiation 95.0 0.015 5E-07 46.6 3.3 22 2-23 9-30 (178)
378 2nq2_C Hypothetical ABC transp 95.0 0.011 3.8E-07 51.5 2.8 24 3-26 33-56 (253)
379 3tw8_B RAS-related protein RAB 95.0 0.013 4.3E-07 47.0 2.9 21 2-22 10-30 (181)
380 2i1q_A DNA repair and recombin 95.0 0.013 4.5E-07 52.6 3.3 23 2-24 99-121 (322)
381 4dsu_A GTPase KRAS, isoform 2B 95.0 0.014 4.9E-07 47.1 3.3 21 3-23 6-26 (189)
382 3kta_A Chromosome segregation 95.0 0.016 5.6E-07 47.1 3.6 24 3-26 28-51 (182)
383 2hxs_A RAB-26, RAS-related pro 94.9 0.014 4.8E-07 46.7 3.1 21 3-23 8-28 (178)
384 3clv_A RAB5 protein, putative; 94.9 0.015 5E-07 47.4 3.3 22 3-24 9-30 (208)
385 1pui_A ENGB, probable GTP-bind 94.9 0.0086 2.9E-07 49.7 1.8 22 2-23 27-48 (210)
386 2bme_A RAB4A, RAS-related prot 94.9 0.015 5.2E-07 46.9 3.2 21 3-23 12-32 (186)
387 2qen_A Walker-type ATPase; unk 94.9 0.014 4.9E-07 52.1 3.3 24 2-25 32-55 (350)
388 1r8s_A ADP-ribosylation factor 94.9 0.016 5.5E-07 45.7 3.3 20 4-23 3-22 (164)
389 2y8e_A RAB-protein 6, GH09086P 94.9 0.015 5E-07 46.5 3.0 21 3-23 16-36 (179)
390 1m7b_A RND3/RHOE small GTP-bin 94.9 0.015 5.3E-07 47.2 3.2 22 3-24 9-30 (184)
391 3cmu_A Protein RECA, recombina 94.9 0.13 4.3E-06 57.0 11.1 36 3-40 734-769 (2050)
392 2a9k_A RAS-related protein RAL 94.9 0.016 5.5E-07 46.6 3.3 21 3-23 20-40 (187)
393 2oil_A CATX-8, RAS-related pro 94.8 0.016 5.6E-07 47.3 3.3 21 3-23 27-47 (193)
394 2pjz_A Hypothetical protein ST 94.8 0.013 4.5E-07 51.4 2.8 23 3-25 32-54 (263)
395 1w5s_A Origin recognition comp 94.8 0.015 5E-07 53.5 3.3 26 2-27 51-78 (412)
396 3upu_A ATP-dependent DNA helic 94.8 0.017 5.8E-07 54.7 3.8 26 3-28 47-72 (459)
397 2efe_B Small GTP-binding prote 94.8 0.017 5.7E-07 46.4 3.2 21 3-23 14-34 (181)
398 3fvq_A Fe(3+) IONS import ATP- 94.8 0.015 5.2E-07 53.4 3.3 24 3-26 32-55 (359)
399 3pxi_A Negative regulator of g 94.8 0.014 4.8E-07 58.8 3.4 24 3-26 203-226 (758)
400 2g6b_A RAS-related protein RAB 94.8 0.017 5.8E-07 46.3 3.3 21 3-23 12-32 (180)
401 4ag6_A VIRB4 ATPase, type IV s 94.8 0.024 8.1E-07 52.4 4.6 35 3-39 37-71 (392)
402 1zcb_A G alpha I/13; GTP-bindi 94.8 0.017 5.7E-07 53.2 3.5 23 1-23 33-55 (362)
403 3kkq_A RAS-related protein M-R 94.8 0.017 5.9E-07 46.5 3.3 22 3-24 20-41 (183)
404 1kjw_A Postsynaptic density pr 94.7 0.19 6.6E-06 44.6 10.3 51 65-123 185-236 (295)
405 1mh1_A RAC1; GTP-binding, GTPa 94.7 0.018 6.2E-07 46.3 3.3 21 3-23 7-27 (186)
406 3k53_A Ferrous iron transport 94.7 0.019 6.5E-07 50.2 3.6 23 2-24 4-26 (271)
407 2woj_A ATPase GET3; tail-ancho 94.7 0.03 1E-06 51.2 5.0 37 2-40 19-57 (354)
408 2xkx_A Disks large homolog 4; 94.7 0.053 1.8E-06 54.4 7.1 54 62-123 608-662 (721)
409 3k1j_A LON protease, ATP-depen 94.7 0.013 4.6E-07 57.5 2.7 25 3-27 62-86 (604)
410 2woo_A ATPase GET3; tail-ancho 94.7 0.032 1.1E-06 50.5 5.0 37 2-40 20-56 (329)
411 2bov_A RAla, RAS-related prote 94.7 0.019 6.5E-07 47.2 3.3 21 3-23 16-36 (206)
412 2oap_1 GSPE-2, type II secreti 94.7 0.016 5.4E-07 55.8 3.1 34 3-39 262-295 (511)
413 3t5g_A GTP-binding protein RHE 94.7 0.018 6.2E-07 46.3 3.0 21 3-23 8-28 (181)
414 3rlf_A Maltose/maltodextrin im 94.6 0.018 6.2E-07 53.3 3.3 24 3-26 31-54 (381)
415 2j9r_A Thymidine kinase; TK1, 94.6 0.035 1.2E-06 47.2 4.8 34 2-37 29-62 (214)
416 3t1o_A Gliding protein MGLA; G 94.6 0.016 5.5E-07 47.1 2.7 25 3-27 16-40 (198)
417 2gf9_A RAS-related protein RAB 94.6 0.02 6.9E-07 46.6 3.3 22 3-24 24-45 (189)
418 1m2o_B GTP-binding protein SAR 94.6 0.02 6.8E-07 47.0 3.2 21 3-23 25-45 (190)
419 1z47_A CYSA, putative ABC-tran 94.6 0.019 6.5E-07 52.7 3.3 24 3-26 43-66 (355)
420 2yyz_A Sugar ABC transporter, 94.6 0.019 6.5E-07 52.8 3.3 24 3-26 31-54 (359)
421 1vg8_A RAS-related protein RAB 94.6 0.02 6.9E-07 47.1 3.3 22 3-24 10-31 (207)
422 3dz8_A RAS-related protein RAB 94.6 0.022 7.6E-07 46.5 3.4 22 3-24 25-46 (191)
423 3tkl_A RAS-related protein RAB 94.5 0.021 7.3E-07 46.5 3.3 21 3-23 18-38 (196)
424 3oes_A GTPase rhebl1; small GT 94.5 0.021 7.1E-07 47.1 3.2 22 3-24 26-47 (201)
425 1z06_A RAS-related protein RAB 94.5 0.021 7.3E-07 46.4 3.3 21 3-23 22-42 (189)
426 3tui_C Methionine import ATP-b 94.5 0.02 6.8E-07 52.7 3.3 23 3-25 56-78 (366)
427 2gf0_A GTP-binding protein DI- 94.5 0.021 7.2E-07 46.6 3.2 21 3-23 10-30 (199)
428 2fg5_A RAB-22B, RAS-related pr 94.5 0.021 7.2E-07 46.7 3.2 21 3-23 25-45 (192)
429 1zd9_A ADP-ribosylation factor 94.5 0.022 7.4E-07 46.5 3.3 21 3-23 24-44 (188)
430 2it1_A 362AA long hypothetical 94.5 0.02 6.9E-07 52.7 3.3 24 3-26 31-54 (362)
431 3ihw_A Centg3; RAS, centaurin, 94.5 0.022 7.4E-07 46.5 3.2 21 3-23 22-42 (184)
432 3tvt_A Disks large 1 tumor sup 94.5 0.18 6E-06 44.9 9.4 53 64-123 179-232 (292)
433 2atv_A RERG, RAS-like estrogen 94.5 0.022 7.5E-07 46.7 3.3 21 3-23 30-50 (196)
434 1moz_A ARL1, ADP-ribosylation 94.5 0.015 5E-07 46.9 2.2 20 3-22 20-39 (183)
435 3pxi_A Negative regulator of g 94.5 0.028 9.4E-07 56.7 4.6 34 3-38 523-556 (758)
436 1zbd_A Rabphilin-3A; G protein 94.5 0.02 7E-07 47.1 3.1 21 3-23 10-30 (203)
437 1x3s_A RAS-related protein RAB 94.5 0.022 7.6E-07 46.2 3.3 22 3-24 17-38 (195)
438 2rcn_A Probable GTPase ENGC; Y 94.5 0.021 7.1E-07 52.4 3.3 23 3-25 217-239 (358)
439 2dby_A GTP-binding protein; GD 94.5 0.017 5.8E-07 53.2 2.8 24 1-24 1-24 (368)
440 3bwd_D RAC-like GTP-binding pr 94.5 0.023 7.9E-07 45.6 3.3 21 3-23 10-30 (182)
441 2bbs_A Cystic fibrosis transme 94.5 0.018 6.1E-07 51.3 2.8 24 3-26 66-89 (290)
442 1ksh_A ARF-like protein 2; sma 94.5 0.02 6.9E-07 46.3 2.9 21 3-23 20-40 (186)
443 3c5c_A RAS-like protein 12; GD 94.5 0.023 7.8E-07 46.4 3.3 21 3-23 23-43 (187)
444 3nh6_A ATP-binding cassette SU 94.4 0.012 4E-07 53.0 1.5 24 3-26 82-105 (306)
445 1v43_A Sugar-binding transport 94.4 0.021 7.3E-07 52.7 3.3 24 3-26 39-62 (372)
446 1zj6_A ADP-ribosylation factor 94.4 0.022 7.4E-07 46.3 3.0 21 3-23 18-38 (187)
447 2yv5_A YJEQ protein; hydrolase 94.4 0.022 7.6E-07 50.9 3.3 22 3-25 167-188 (302)
448 1fzq_A ADP-ribosylation factor 94.4 0.021 7E-07 46.4 2.9 22 2-23 17-38 (181)
449 1g29_1 MALK, maltose transport 94.4 0.022 7.6E-07 52.6 3.3 24 3-26 31-54 (372)
450 2a5j_A RAS-related protein RAB 94.4 0.024 8.3E-07 46.2 3.3 21 3-23 23-43 (191)
451 3cwq_A Para family chromosome 94.4 0.047 1.6E-06 45.8 5.1 37 1-40 1-37 (209)
452 2p5s_A RAS and EF-hand domain 94.4 0.024 8.3E-07 46.6 3.3 21 3-23 30-50 (199)
453 3reg_A RHO-like small GTPase; 94.3 0.025 8.5E-07 46.2 3.3 22 3-24 25-46 (194)
454 1gwn_A RHO-related GTP-binding 94.3 0.024 8.4E-07 47.2 3.2 22 3-24 30-51 (205)
455 2ew1_A RAS-related protein RAB 94.3 0.025 8.4E-07 47.1 3.2 22 3-24 28-49 (201)
456 2h17_A ADP-ribosylation factor 94.3 0.022 7.6E-07 46.1 2.9 21 3-23 23-43 (181)
457 1jwy_B Dynamin A GTPase domain 94.3 0.023 7.8E-07 50.5 3.2 22 2-23 25-46 (315)
458 2bcg_Y Protein YP2, GTP-bindin 94.3 0.025 8.6E-07 46.7 3.2 21 3-23 10-30 (206)
459 1ypw_A Transitional endoplasmi 94.3 0.015 5.1E-07 59.1 2.1 25 3-27 513-537 (806)
460 2iwr_A Centaurin gamma 1; ANK 94.3 0.019 6.4E-07 46.1 2.3 21 3-23 9-29 (178)
461 1f6b_A SAR1; gtpases, N-termin 94.3 0.021 7.2E-07 47.2 2.7 20 3-22 27-46 (198)
462 2npi_A Protein CLP1; CLP1-PCF1 94.3 0.018 6.2E-07 54.7 2.5 24 2-25 139-162 (460)
463 2o52_A RAS-related protein RAB 94.3 0.024 8.3E-07 46.8 3.0 21 3-23 27-47 (200)
464 3cph_A RAS-related protein SEC 94.2 0.027 9.1E-07 46.6 3.3 22 2-23 21-42 (213)
465 1ega_A Protein (GTP-binding pr 94.2 0.027 9.3E-07 50.2 3.5 22 2-23 9-30 (301)
466 3k9g_A PF-32 protein; ssgcid, 94.2 0.045 1.5E-06 47.4 4.8 36 1-39 27-63 (267)
467 3gd7_A Fusion complex of cysti 94.2 0.025 8.5E-07 52.6 3.3 24 3-26 49-72 (390)
468 3cbq_A GTP-binding protein REM 94.2 0.02 7E-07 47.2 2.4 20 3-22 25-44 (195)
469 1ihu_A Arsenical pump-driving 94.2 0.04 1.4E-06 53.8 4.8 37 2-40 9-45 (589)
470 1ko7_A HPR kinase/phosphatase; 94.2 0.026 9E-07 50.8 3.3 22 3-24 146-167 (314)
471 1dar_A EF-G, elongation factor 94.2 0.16 5.3E-06 50.7 9.2 24 2-25 13-36 (691)
472 3b1v_A Ferrous iron uptake tra 94.2 0.032 1.1E-06 49.1 3.7 22 2-23 4-25 (272)
473 1byi_A Dethiobiotin synthase; 94.2 0.055 1.9E-06 45.4 5.1 36 2-39 2-38 (224)
474 2il1_A RAB12; G-protein, GDP, 94.2 0.025 8.7E-07 46.3 2.9 21 3-23 28-48 (192)
475 2qu8_A Putative nucleolar GTP- 94.1 0.031 1E-06 47.2 3.5 22 2-23 30-51 (228)
476 2fv8_A H6, RHO-related GTP-bin 94.1 0.028 9.6E-07 46.6 3.2 21 3-23 27-47 (207)
477 3d31_A Sulfate/molybdate ABC t 94.1 0.018 6E-07 52.7 2.1 24 3-26 28-51 (348)
478 1z6t_A APAF-1, apoptotic prote 94.1 0.027 9.4E-07 54.6 3.6 22 2-23 148-169 (591)
479 3q9l_A Septum site-determining 94.1 0.052 1.8E-06 46.6 5.0 37 2-40 3-40 (260)
480 2c78_A Elongation factor TU-A; 94.1 0.21 7.2E-06 46.2 9.5 23 3-25 13-35 (405)
481 2b6h_A ADP-ribosylation factor 94.1 0.025 8.7E-07 46.4 2.9 20 3-22 31-50 (192)
482 2elf_A Protein translation elo 94.1 0.097 3.3E-06 48.1 7.1 22 1-22 21-42 (370)
483 1r6b_X CLPA protein; AAA+, N-t 94.1 0.027 9.4E-07 56.6 3.6 25 3-27 490-514 (758)
484 2fh5_B SR-beta, signal recogni 94.1 0.03 1E-06 46.5 3.3 22 2-23 8-29 (214)
485 4bas_A ADP-ribosylation factor 94.1 0.032 1.1E-06 45.5 3.4 21 2-22 18-38 (199)
486 2gco_A H9, RHO-related GTP-bin 94.1 0.03 1E-06 46.2 3.2 21 3-23 27-47 (201)
487 1tq4_A IIGP1, interferon-induc 94.1 0.03 1E-06 52.4 3.5 24 2-25 70-93 (413)
488 1tf7_A KAIC; homohexamer, hexa 94.0 0.027 9.3E-07 54.3 3.3 20 3-22 41-62 (525)
489 2q3h_A RAS homolog gene family 94.0 0.029 1E-06 46.0 3.1 21 3-23 22-42 (201)
490 1sky_E F1-ATPase, F1-ATP synth 94.0 1.4 4.7E-05 41.8 14.9 126 4-146 154-293 (473)
491 2fu5_C RAS-related protein RAB 94.0 0.017 5.8E-07 46.6 1.5 21 3-23 10-30 (183)
492 4gzl_A RAS-related C3 botulinu 94.0 0.031 1.1E-06 46.3 3.2 21 3-23 32-52 (204)
493 1u0l_A Probable GTPase ENGC; p 94.0 0.029 9.9E-07 50.0 3.2 23 3-25 171-193 (301)
494 3lxw_A GTPase IMAP family memb 94.0 0.029 1E-06 48.4 3.1 21 3-23 23-43 (247)
495 3of5_A Dethiobiotin synthetase 94.0 0.062 2.1E-06 46.0 5.1 35 1-37 4-39 (228)
496 2hup_A RAS-related protein RAB 94.0 0.032 1.1E-06 46.1 3.2 21 3-23 31-51 (201)
497 3ea0_A ATPase, para family; al 94.0 0.076 2.6E-06 45.0 5.7 39 1-40 4-43 (245)
498 1knx_A Probable HPR(Ser) kinas 94.0 0.022 7.6E-07 51.2 2.3 21 3-23 149-169 (312)
499 2xj4_A MIPZ; replication, cell 93.9 0.047 1.6E-06 48.1 4.4 36 3-40 6-42 (286)
500 2qtf_A Protein HFLX, GTP-bindi 93.9 0.031 1E-06 51.4 3.3 22 2-23 180-201 (364)
No 1
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=100.00 E-value=5.9e-44 Score=319.32 Aligned_cols=250 Identities=22% Similarity=0.362 Sum_probs=189.4
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD 80 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD 80 (303)
|++|+|+|+|||||||+|+.|++.+... +..+++++.+.+...... |.. ..+..++......+...+.. ..||+|
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~--g~~~i~~~~D~~~~~l~~-~~~-~~e~~~~~~~~~~i~~~l~~-~~vIiD 78 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKN--NIDVIVLGSDLIRESFPV-WKE-KYEEFIKKSTYRLIDSALKN-YWVIVD 78 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEECTHHHHTTSSS-CCG-GGHHHHHHHHHHHHHHHHTT-SEEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhC--CCEEEEECchHHHHHHhh-hhH-HHHHHHHHHHHHHHHHHhhC-CEEEEe
Confidence 6899999999999999999999997643 344554453322110111 432 24455555555566677777 899999
Q ss_pred CCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeCC
Q 047717 81 SLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELCP 160 (303)
Q Consensus 81 ~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~ 160 (303)
++++++++|+.+.+.++..+.+.++|||+||+++|.+|+.+|+. .++.+.++.+..+|++|...++|+.|.++|++
T Consensus 79 ~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~----~~~~~~l~~~~~~~e~~~~~~~~~~~~~~Id~ 154 (260)
T 3a4m_A 79 DTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE----KIPNEVIKKMYEKFDEPGKKYKWDEPFLIIDT 154 (260)
T ss_dssp SCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC----SSCHHHHHHHHHHCCCTTSSCGGGCCSEEEET
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC----CCCHHHHHHHHHHhcCccccCCCCCCEEEEeC
Confidence 99999999999999999999999999999999999999999863 46789999999999999988999999999997
Q ss_pred CCcccccchHHHHHHHHHHHhccCCCCcccccCCCCccc-ccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Q 047717 161 YKDAIENSSAAILDAVAYLTKKVDSKSRDVKILQPTIAT-QNTRFSEANSLYELDRATQEVINAVVEAQSKALGGPMNGI 239 (303)
Q Consensus 161 ~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~p~~~t-~~~~~~~~~~l~~lD~~t~~iv~~i~~~~~~~~~~~~~~~ 239 (303)
+.. . ..+++++.|.+. -..+||.+| +.++.+++||||+||+.||+||+++|++++.+
T Consensus 155 ~~~-~-----~~~ei~~~I~~~--------l~~~~~~~~~~~~~~~~~~~l~~lD~~~~~iv~~~~~~~~~~-------- 212 (260)
T 3a4m_A 155 TKD-I-----DFNEIAKKLIEK--------SKEIPKFYVLEENKNKNNNISDKIDKETRKIVSEYIKSKKLD-------- 212 (260)
T ss_dssp TSC-C-----CHHHHHHHHHHH--------HTSCCCC-----------CHHHHHHHHHHHHHHHHHHHHTCC--------
T ss_pred CCC-C-----CHHHHHHHHHhc--------ccCCCCcccccCCCCCCccHHHHHHHHHHHHHHHHHHhhhcc--------
Confidence 642 1 146777777664 234788888 88899999999999999999999999988721
Q ss_pred ccCCCCCceeeccCCCHHHHHhhHHHHHhhhcCCCCCCCCCCCChhHHHHHHHHHHHhhhc
Q 047717 240 SLGQGLPNISISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDADSAKRMFVDYLNRELE 300 (303)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~r~rrqf~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~ 300 (303)
+++++||+|+|||||+++|+. ++.+.++|+++||+|||++|+
T Consensus 213 -------------~~~~~~L~~~rr~fl~~~~~~------~~~~~~~~~~~f~~~l~~~~~ 254 (260)
T 3a4m_A 213 -------------KDKIKEVVELRKEFLKKIKKM------EEVDADRVLKEFKDLLNSYLE 254 (260)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHC--
T ss_pred -------------cccHHHHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHHHhh
Confidence 257999999999999999875 456899999999999999986
No 2
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.75 E-value=3.6e-18 Score=142.35 Aligned_cols=137 Identities=17% Similarity=0.108 Sum_probs=101.4
Q ss_pred CE-EEEEEccCCCCHHHHHHHHHH-HHccccCCccEEEecCCc---cCCCcc--ccCCCchhhHHHHHHHHHHHHHhc--
Q 047717 1 MA-LIVICGQPSSGKSLAATCLAE-ALKESEAKETVRIIDEAS---FHLDRN--QSYASMPAEKNLRGVLRSEVDRSV-- 71 (303)
Q Consensus 1 M~-LI~l~G~PGSGKSTlA~~La~-~l~~~~~~~~v~~~~~~~---~~~~~~--~~y~~~~~e~~~r~~l~~~v~~~L-- 71 (303)
|| +|+|+|+|||||||+|+.|++ .++.. ++..+... .+.... ..|. ...+..++..+...+...+
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~~~~~~~-----~i~~d~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 74 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFY-----NINRDDYRQSIMAHEERDEYKYT-KKKEGIVTGMQFDTAKSILYG 74 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTTEE-----EECHHHHHHHHTTSCCGGGCCCC-HHHHHHHHHHHHHHHHHHHTS
T ss_pred CCeEEEEecCCCCCHHHHHHHHHhhcCCcE-----EecHHHHHHHhhCCCccchhhhc-hhhhhHHHHHHHHHHHHHHhh
Confidence 77 899999999999999999998 34332 22212110 010000 1232 1233444445556677777
Q ss_pred -CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCC
Q 047717 72 -SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPD 146 (303)
Q Consensus 72 -~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~ 146 (303)
..|..||+|+.+....+|..+..+++..+.++.+||++||.++|.+|+.+|.. +..+++.+..+..+|++|.
T Consensus 75 ~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~---~~~~~~~i~~~~~~~~~~~ 147 (181)
T 1ly1_A 75 GDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT---KAVPIDVLRSMYKSMREYL 147 (181)
T ss_dssp CSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG---GCCCHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc---CCCCHHHHHHHHHHhhccC
Confidence 78999999999999999999988888888888999999999999999999875 3568899999999999874
No 3
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.70 E-value=7.1e-17 Score=153.08 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=108.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS 81 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~ 81 (303)
.+|+|+|+|||||||+|+.|++.++. .+++.+.+. .++ .+...+...+..+..||+|+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~-------~~i~~D~~~--------------~~~-~~~~~~~~~l~~g~~vIiD~ 316 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGY-------VHVNRDTLG--------------SWQ-RCVSSCQAALRQGKRVVIDN 316 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTC-------EECCGGGSC--------------SHH-HHHHHHHHHHHTTCCEEEES
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCc-------EEEccchHH--------------HHH-HHHHHHHHHHhcCCcEEEeC
Confidence 48999999999999999999987754 333432221 112 23345666777889999999
Q ss_pred CCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC--CCCCHHHHHHHHHHhcCCCCCCCCCCceeeeC
Q 047717 82 LNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE--AAYDDKIFEDLVRRFEKPDRRNRWDSPLFELC 159 (303)
Q Consensus 82 ~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~--~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~ 159 (303)
+|....+|..+.++++..+.++.+|||++|.++|.+|+.+|...+. ..++++++..+..+||+|...++|+.- +.++
T Consensus 317 ~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P~~~E~fd~v-~~v~ 395 (416)
T 3zvl_A 317 TNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEI-LEIP 395 (416)
T ss_dssp CCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCGGGTCSEE-EEEC
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCCCcccCCcEE-EEEe
Confidence 9999999999999999999999999999999999999999976332 246889999999999999998999863 3344
No 4
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.66 E-value=3.4e-16 Score=141.51 Aligned_cols=138 Identities=17% Similarity=0.099 Sum_probs=101.2
Q ss_pred CE-EEEEEccCCCCHHHHHHHHHHHH-ccccCCccEEEecCC---ccCCCcc--ccCCCchhhHHHHHHHHHHHHHhc--
Q 047717 1 MA-LIVICGQPSSGKSLAATCLAEAL-KESEAKETVRIIDEA---SFHLDRN--QSYASMPAEKNLRGVLRSEVDRSV-- 71 (303)
Q Consensus 1 M~-LI~l~G~PGSGKSTlA~~La~~l-~~~~~~~~v~~~~~~---~~~~~~~--~~y~~~~~e~~~r~~l~~~v~~~L-- 71 (303)
|| +|+|+|+|||||||+|+.|++.+ +.. ++..|+. ....... ..|. ...+..+...+...+...+
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~~~~~~~-----~i~~D~~r~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 74 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFY-----NINRDDYRQSIMAHEERDEYKYT-KKKEGIVTGMQFDTAKSILYG 74 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTTEE-----EECHHHHHHHHTTSCCCC---CC-HHHHHHHHHHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhCCCcE-----EecccHHHHHhccCCcccccccc-hhhhhHHHHHHHHHHHHHHhh
Confidence 66 89999999999999999999864 322 2222210 0010000 1232 1223334444555667778
Q ss_pred -CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCC
Q 047717 72 -SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDR 147 (303)
Q Consensus 72 -~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~ 147 (303)
..+..||+|+.+....+|..+..+++..+.++.+||+++|.+++.+|+.+|.. +..+++.++.+..+|++|..
T Consensus 75 ~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~---~~~~~e~i~~~~~~~~~~~~ 148 (301)
T 1ltq_A 75 GDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT---KAVPIDVLRSMYKSMREYLG 148 (301)
T ss_dssp CTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG---GCCCHHHHHHHHHHHHHHHT
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC---CCCCHHHHHHHHHHHhcccC
Confidence 78899999999999999999988888888888999999999999999999875 35688999999999987754
No 5
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.66 E-value=2.6e-16 Score=134.18 Aligned_cols=155 Identities=15% Similarity=0.152 Sum_probs=101.0
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC-------CccccCCCchhhHHHHHHHHHHHHHhcCC
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL-------DRNQSYASMPAEKNLRGVLRSEVDRSVSK 73 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~-------~~~~~y~~~~~e~~~r~~l~~~v~~~L~~ 73 (303)
|++|+|+|+|||||||+|+.|++.++.. ++..| .+.. .....|.+..... ....+...+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~-----~i~~d--~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~l~~~~~~ 85 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYP-----FIEGD--ALHPPENIRKMSEGIPLTDDDRWP-----WLAAIGERLAS 85 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCC-----EEEGG--GGCCHHHHHHHHHTCCCCHHHHHH-----HHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCE-----EEeCC--cCcchhhHHHHhcCCCCCchhhHH-----HHHHHHHHHhc
Confidence 4589999999999999999999998643 22222 1110 0011122111111 12234445577
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCC
Q 047717 74 DNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDS 153 (303)
Q Consensus 74 ~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~ 153 (303)
+..||+|+.+....+|..+... .+.++.+|||++|.+++.+|+.+|.. +..+.+.++.+...+++|.. ..
T Consensus 86 ~~~vivd~~~~~~~~~~~l~~~---~~~~~~vi~l~~~~e~~~~Rl~~R~~---~~~~~~~~~~~~~~~~~~~~----~~ 155 (202)
T 3t61_A 86 REPVVVSCSALKRSYRDKLRES---APGGLAFVFLHGSESVLAERMHHRTG---HFMPSSLLQTQLETLEDPRG----EV 155 (202)
T ss_dssp SSCCEEECCCCSHHHHHHHHHT---STTCCEEEEEECCHHHHHHHHHHHHS---SCCCHHHHHHHHHHCCCCTT----ST
T ss_pred CCCEEEECCCCCHHHHHHHHHh---cCCCeEEEEEeCCHHHHHHHHHHhhc---cCCCHHHHHHHHHhcCCCCC----CC
Confidence 8889999998877777666543 24567899999999999999999975 23468889999999887542 23
Q ss_pred ceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717 154 PLFELCPYKDAIENSSAAILDAVAYLTK 181 (303)
Q Consensus 154 pl~~i~~~~~~~~~~~~~~~ei~~~l~~ 181 (303)
..++|+++ ..+ ++..++|++.|.+
T Consensus 156 ~~~~Id~~-~~~---~e~~~~I~~~l~~ 179 (202)
T 3t61_A 156 RTVAVDVA-QPL---AEIVREALAGLAR 179 (202)
T ss_dssp TEEEEESS-SCH---HHHHHHHHHHHHH
T ss_pred CeEEEeCC-CCH---HHHHHHHHHHHHH
Confidence 56777765 222 3445555555543
No 6
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.62 E-value=2.2e-15 Score=126.76 Aligned_cols=117 Identities=17% Similarity=0.252 Sum_probs=80.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV 79 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv 79 (303)
.+|+|+|+|||||||+++.|++.+... +..+.+++.+.+ .......|........++ .+...+...+..|.+||+
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~~~~~g~~vi~ 90 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKE--GYRVEVLDGDWARTTVSEGAGFTREERLRHLK-RIAWIARLLARNGVIVIC 90 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHH-HHHHHHHHHHTTTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEeeHHHHHHHHhhccCCChhhHHHHHH-HHHHHHHHHHhCCCEEEE
Confidence 589999999999999999999999764 334544442211 111111233211122222 222222334567889999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE 121 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~ 121 (303)
|+.+.+..+|.+++++++..+.++++|||++|++++.+|+..
T Consensus 91 d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~ 132 (186)
T 2yvu_A 91 SFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK 132 (186)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred eCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence 998888889999998888778889999999999999999754
No 7
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.61 E-value=3.3e-15 Score=124.82 Aligned_cols=132 Identities=13% Similarity=0.038 Sum_probs=84.4
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc--------cCCCccccCCCchhhHHHHHHHHHHHHHhcC
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS--------FHLDRNQSYASMPAEKNLRGVLRSEVDRSVS 72 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~--------~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~ 72 (303)
|++|+|+|+|||||||+|+.|++.++.. ++ .+.+. +. .....|... +. .+..+...+...+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~-----~i-~d~~~~g~~i~~~~~-~g~~~~~~~--~~-~~~~~~~~i~~~l~ 74 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGS-----FV-FEPEEMGQALRKLTP-GFSGDPQEH--PM-WIPLMLDALQYASR 74 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTC-----EE-CCTHHHHHHHHHTST-TCCSCGGGS--TT-HHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCC-----EE-EchhhhHHHHHHhCc-cccchhhhh--HH-HHHHHHHHHHHHHH
Confidence 4689999999999999999999998753 22 12110 11 001111111 11 11122233344444
Q ss_pred C-CCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCC
Q 047717 73 K-DNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKP 145 (303)
Q Consensus 73 ~-~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P 145 (303)
. +..||+|+++...+++.++...++..+..+..|||+||++++.+|+.+|..+ ++..+.++.+...++++
T Consensus 75 ~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r---~~~~~~~~~~~~~~~~~ 145 (183)
T 2vli_A 75 EAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQP---QVNVGTVEDRLNELRGE 145 (183)
T ss_dssp HCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC-------CCHHHHHHHHHHHTSG
T ss_pred hCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcccc---chhHHHHHHHHHhhccc
Confidence 3 7889999998888788888887777777777899999999999999988642 35678888888888865
No 8
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.60 E-value=1.8e-14 Score=121.27 Aligned_cols=170 Identities=16% Similarity=0.144 Sum_probs=94.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCch-h---hHHHHHHHHHHHHHhcCCCCEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMP-A---EKNLRGVLRSEVDRSVSKDNII 77 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~-~---e~~~r~~l~~~v~~~L~~~~~V 77 (303)
.+|+|+|+|||||||+|+.|++.++.. ++..|...-.........+.. . +......+...+...++.|..|
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~-----~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v 80 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLP-----LLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSL 80 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCe-----EecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCCCeE
Confidence 489999999999999999999998643 333222110000000011110 0 0011123334455667788899
Q ss_pred EEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCC---CCHHHHH--HHHHHhcCCCCCCCCC
Q 047717 78 IVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAA---YDDKIFE--DLVRRFEKPDRRNRWD 152 (303)
Q Consensus 78 IvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~---~~~e~~~--~l~~r~E~P~~~~rwd 152 (303)
|+|+.+.....+.++..+++..+.++++|||++|++++.+|+.+|...+... ...+.+. ++...|+. -..-...
T Consensus 81 i~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 159 (193)
T 2rhm_A 81 IMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGD-IPPLPLG 159 (193)
T ss_dssp EEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHHSCC-CCCCCCC
T ss_pred EEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHHHhc-CCCccCC
Confidence 9999873222233454455556778899999999999999999987522111 1122222 23333332 1111122
Q ss_pred CceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717 153 SPLFELCPYKDAIENSSAAILDAVAYLTK 181 (303)
Q Consensus 153 ~pl~~i~~~~~~~~~~~~~~~ei~~~l~~ 181 (303)
.+.++|+++.... ...++|++.|.+
T Consensus 160 ~~~~~Idt~~~~~----~~~~~i~~~i~~ 184 (193)
T 2rhm_A 160 GPLLTVDTTFPEQ----IDMNAIVQWVRQ 184 (193)
T ss_dssp SCEEEEECSSGGG----CCHHHHHHHHHH
T ss_pred CCEEEEeCCCCcc----cCHHHHHHHHHH
Confidence 5788898764322 235666665553
No 9
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.56 E-value=2.7e-13 Score=112.59 Aligned_cols=143 Identities=16% Similarity=0.199 Sum_probs=88.3
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC-------ccccCCCchhhHHHHHHHHHHHHHhcCC
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD-------RNQSYASMPAEKNLRGVLRSEVDRSVSK 73 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~-------~~~~y~~~~~e~~~r~~l~~~v~~~L~~ 73 (303)
|.+|+|+|+|||||||+++.|+..++.. +++.+.+... ....+.+......++ .+...+...+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~-------~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ 79 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAA-------FLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQ-ALNDAAFAMQRT 79 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCE-------EEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcE-------EEeCccccchHHHHHhhcCcCCCccccccHHH-HHHHHHHHHHhc
Confidence 3589999999999999999999987542 2222222100 011122111112222 233334444555
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCC
Q 047717 74 DNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDS 153 (303)
Q Consensus 74 ~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~ 153 (303)
+..||+|..++...+|..+ +..+..+.+|||+||.+++.+|+.+|.. ...+.+.+......|++|... ..
T Consensus 80 ~~~~vi~~~~~~~~~~~~l----~~~~~~~~vv~l~~~~e~~~~R~~~R~~---~~~~~~~~~~~~~~~~~~~~~---~~ 149 (175)
T 1knq_A 80 NKVSLIVCSALKKHYRDLL----REGNPNLSFIYLKGDFDVIESRLKARKG---HFFKTQMLVTQFETLQEPGAD---ET 149 (175)
T ss_dssp CSEEEEECCCCSHHHHHHH----HTTCTTEEEEEEECCHHHHHHHHHTSTT---CCCCHHHHHHHHHHCCCCCTT---CT
T ss_pred CCcEEEEeCchHHHHHHHH----HhcCCCEEEEEEECCHHHHHHHHHhccC---CCCchHHHHHHHHhhhCcccC---CC
Confidence 7788999877666555433 4445567899999999999999999864 223467777777777765211 12
Q ss_pred ceeeeCCC
Q 047717 154 PLFELCPY 161 (303)
Q Consensus 154 pl~~i~~~ 161 (303)
..++|+++
T Consensus 150 ~~~~Id~~ 157 (175)
T 1knq_A 150 DVLVVDID 157 (175)
T ss_dssp TEEEEECS
T ss_pred CeEEEeCC
Confidence 46888764
No 10
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.52 E-value=1e-13 Score=114.30 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=83.9
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD 80 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD 80 (303)
|++|+|+|+|||||||+|+.|++.++.. + ++.+.+.... . ... .+.. ....+..+..||+|
T Consensus 1 M~~i~l~G~~GsGKsT~~~~L~~~l~~~-----~--i~~d~~~~~~----~------~~~-~~~~-~~~~l~~~~~vi~d 61 (173)
T 3kb2_A 1 MTLIILEGPDCCFKSTVAAKLSKELKYP-----I--IKGSSFELAK----S------GNE-KLFE-HFNKLADEDNVIID 61 (173)
T ss_dssp -CEEEEECSSSSSHHHHHHHHHHHHCCC-----E--EECCCHHHHT----T------CHH-HHHH-HHHHHTTCCSEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCe-----e--ecCcccccch----h------HHH-HHHH-HHHHHHhCCCeEEe
Confidence 8899999999999999999999998743 2 2322211100 0 001 1111 22345678888988
Q ss_pred CCC---------------CchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCC
Q 047717 81 SLN---------------SIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKP 145 (303)
Q Consensus 81 ~~n---------------~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P 145 (303)
-.. ....++.. +......+..+||+++|++++.+|+.+|++ +....+.++.+...|+++
T Consensus 62 r~~~~~~v~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r---~~~~~~~~~~~~~~~~~~ 135 (173)
T 3kb2_A 62 RFVYSNLVYAKKFKDYSILTERQLRF---IEDKIKAKAKVVYLHADPSVIKKRLRVRGD---EYIEGKDIDSILELYREV 135 (173)
T ss_dssp SCHHHHHHHTTTBTTCCCCCHHHHHH---HHHHHTTTEEEEEEECCHHHHHHHHHHHSC---SCCCHHHHHHHHHHHHHH
T ss_pred eeecchHHHHHHHHHhhHhhHHHHHH---HhccCCCCCEEEEEeCCHHHHHHHHHhcCC---cchhhhHHHHHHHHHHHH
Confidence 421 11222222 222234577899999999999999999854 234567778888888875
Q ss_pred CCCCCCCCceeeeCCC
Q 047717 146 DRRNRWDSPLFELCPY 161 (303)
Q Consensus 146 ~~~~rwd~pl~~i~~~ 161 (303)
..... ...++|+++
T Consensus 136 ~~~~~--~~~~~id~~ 149 (173)
T 3kb2_A 136 MSNAG--LHTYSWDTG 149 (173)
T ss_dssp HHTCS--SCEEEEETT
T ss_pred HhhcC--CCEEEEECC
Confidence 54333 367788764
No 11
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.49 E-value=4e-13 Score=111.64 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=71.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEE--ecCC--ccCC----C-ccccCCC---chhhHHHH---HHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRI--IDEA--SFHL----D-RNQSYAS---MPAEKNLR---GVLRSE 66 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~--~~~~--~~~~----~-~~~~y~~---~~~e~~~r---~~l~~~ 66 (303)
++|+|+|+|||||||+|+.|++.++.. .+. .|+. .... . ....|.+ ...+...+ ..+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~-----~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEP-----WLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEG 78 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSC-----EEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCC-----eEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHH
Confidence 489999999999999999999998642 222 2211 0000 0 0001111 01112222 123334
Q ss_pred HHHhcCCCCEEEEcCCCCc-hHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 67 VDRSVSKDNIIIVDSLNSI-KGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 67 v~~~L~~~~~VIvD~~n~~-k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
+...+..|..||+|+.+.. ...+.++....+ +.++.+||+.||.+++.+|+.+|+.
T Consensus 79 ~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~--~~~~~~v~l~~~~e~l~~R~~~r~~ 135 (178)
T 1qhx_A 79 VVAMARAGARIIIDDVFLGGAAAQERWRSFVG--DLDVLWVGVRCDGAVAEGRETARGD 135 (178)
T ss_dssp HHHHHHTTCEEEEEECCTTTHHHHHHHHHHHT--TCCEEEEEEECCHHHHHHHHHHTSS
T ss_pred HHHHHhcCCeEEEEeccccChHHHHHHHHHhc--CCcEEEEEEECCHHHHHHHHHhhCC
Confidence 5556677889999997653 344555554442 4567889999999999999998864
No 12
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.49 E-value=3e-13 Score=133.32 Aligned_cols=164 Identities=16% Similarity=0.235 Sum_probs=103.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV 79 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv 79 (303)
++|+|+|+|||||||+|+.|++.|... +..++.++.+.+ .+.....|.+...+..++. +...+...+..|.+||+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~--G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r~-i~eva~~~l~~G~iVI~ 129 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCH--GIPCYTLDGDNIRQGLNKNLGFSPEDREENVRR-IAEVAKLFADAGLVCIT 129 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEESHHHHTTTTTTTCCSSHHHHHHHHHH-HHHHHHHHHHTTCEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEechHHhhhccCccccCChhhhHHHHHH-HHHHHHHHHhCCCEEEE
Confidence 589999999999999999999998433 234555553322 1212224443334445552 33344445678899999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHh----hhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCce
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER----HEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPL 155 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R----~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl 155 (303)
|....++.+|++++.+++..+.++++|||+||.++|.+|+.++ .+.+ ....+..+...|+. +..|.
T Consensus 130 d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~----~~~~~~~~~~~Ye~------p~~~d 199 (630)
T 1x6v_B 130 SFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAG----EIKGFTGIDSEYEK------PEAPE 199 (630)
T ss_dssp ECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC--------CBTTTBCCCC------CSSCS
T ss_pred eCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhh----hHHHHHHhhhhhcc------cCCCc
Confidence 9766667788899888887788899999999999999998632 1111 01111112223333 34567
Q ss_pred eeeCCCCcccccchHHHHHHHHHHHh
Q 047717 156 FELCPYKDAIENSSAAILDAVAYLTK 181 (303)
Q Consensus 156 ~~i~~~~~~~~~~~~~~~ei~~~l~~ 181 (303)
++|+++..++ ++..++|++.|..
T Consensus 200 lvIDts~~s~---eevv~~Il~~L~~ 222 (630)
T 1x6v_B 200 LVLKTDSCDV---NDCVQQVVELLQE 222 (630)
T ss_dssp EEEETTSSCH---HHHHHHHHHHHHH
T ss_pred EEEECCCCCH---HHHHHHHHHHHHh
Confidence 8888753332 3455666666654
No 13
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.48 E-value=3.1e-13 Score=119.65 Aligned_cols=136 Identities=21% Similarity=0.244 Sum_probs=89.6
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc----cCC----C--------ccccCCC------chhhHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS----FHL----D--------RNQSYAS------MPAEKN 58 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~----~~~----~--------~~~~y~~------~~~e~~ 58 (303)
|++|+|+|+|||||||+|+.|++.++.. ++..|+.. ..+ . ....+.. ......
T Consensus 1 M~li~I~G~~GSGKSTla~~La~~~~~~-----~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 75 (253)
T 2ze6_A 1 MLLHLIYGPTCSGKTDMAIQIAQETGWP-----VVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAES 75 (253)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCC-----EEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHH
T ss_pred CeEEEEECCCCcCHHHHHHHHHhcCCCe-----EEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHH
Confidence 8999999999999999999999998753 33333210 000 0 0000110 112244
Q ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHH----cCCcEEEEEEecCH-HHHHHHHHHhhhc--CCCCCC
Q 047717 59 LRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARA----AGIRYCVLYCDLEE-DHCRKWNKERHEK--GEAAYD 131 (303)
Q Consensus 59 ~r~~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~----~~~~~~vI~l~~~~-e~~~~R~~~R~~~--~~~~~~ 131 (303)
++......+ ..+..+..||+++... . .+..+++. .+.++++||+++|. +++.+|+.+|... ..++++
T Consensus 76 f~~~~~~~i-~~~~~g~~vIl~gg~~--~---~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~~~~~~ 149 (253)
T 2ze6_A 76 AHRRLIFEV-DWRKSEEGLILEGGSI--S---LLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAIREDR 149 (253)
T ss_dssp HHHHHHHHH-HTTTTSSEEEEEECCH--H---HHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCSSS
T ss_pred HHHHHHHHH-HHHhCCCCeEEeccHH--H---HHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHHHHHHhcCccc
Confidence 444555566 6777888888876432 1 12234444 55778999999997 9999999999864 224566
Q ss_pred HHHHHHHHHHhcCCCC
Q 047717 132 DKIFEDLVRRFEKPDR 147 (303)
Q Consensus 132 ~e~~~~l~~r~E~P~~ 147 (303)
++.++.+...|+.|..
T Consensus 150 ~~~l~e~~~~~~~p~~ 165 (253)
T 2ze6_A 150 PSLLEELAELWNYPAA 165 (253)
T ss_dssp CCHHHHHHHHHTSTTH
T ss_pred chHHHHHHHhcCCcch
Confidence 6889999999998763
No 14
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.48 E-value=8.8e-14 Score=118.46 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=89.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC-------CccccCCCchhhHHHHHHHHHHHHHhcCCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL-------DRNQSYASMPAEKNLRGVLRSEVDRSVSKD 74 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~-------~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~ 74 (303)
.+|+|+|+|||||||+++.|+..++.. .++.+.+.. .....+.+......++ .+...+...+..+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~-------~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~g 101 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLE-------FAEADAFHSPENIATMQRGIPLTDEDRWPWLR-SLAEWMDARADAG 101 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCE-------EEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHH-HHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCe-------EEcccccccHHHHHHHhcCCCCCCcccccHHH-HHHHHHHHHHhcC
Confidence 389999999999999999999988542 223222210 0011122211112222 3333344455667
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCc
Q 047717 75 NIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSP 154 (303)
Q Consensus 75 ~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~p 154 (303)
..+|+|.....+.+|..+ +....++.+|||+||.+++.+|+.+|... ..+.+.+..+...++++.. +.+
T Consensus 102 ~~viid~~~~~~~~~~~l----~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~---~~~~~~l~~~~~~~~~~~~----~~~ 170 (200)
T 4eun_A 102 VSTIITCSALKRTYRDVL----REGPPSVDFLHLDGPAEVIKGRMSKREGH---FMPASLLQSQLATLEALEP----DES 170 (200)
T ss_dssp CCEEEEECCCCHHHHHHH----TTSSSCCEEEEEECCHHHHHHHHTTCSCC---SSCGGGHHHHHHHCCCCCT----TSC
T ss_pred CCEEEEchhhhHHHHHHH----HHhCCceEEEEEeCCHHHHHHHHHhcccC---CCCHHHHHHHHHHhCCCCC----CCC
Confidence 788999887776666544 33334668999999999999999988652 3356778888888876442 225
Q ss_pred eeeeCCC
Q 047717 155 LFELCPY 161 (303)
Q Consensus 155 l~~i~~~ 161 (303)
.++|+++
T Consensus 171 ~~~Id~~ 177 (200)
T 4eun_A 171 GIVLDLR 177 (200)
T ss_dssp EEEEETT
T ss_pred eEEEECC
Confidence 7888864
No 15
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.46 E-value=1.7e-13 Score=117.74 Aligned_cols=115 Identities=17% Similarity=0.279 Sum_probs=77.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHc-cccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALK-ESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIII 78 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~-~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VI 78 (303)
.+|+|+|+|||||||+++.|++.++ .. +..+++++.+.+. ......|.....+..++ .+...+...+..|..||
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~--g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~~~-~~~~~~~~~l~~g~~VI 102 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDR--RVHAYRLDGDNIRFGLNKDLGFSEADRNENIR-RIAEVAKLFADSNSIAI 102 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHH--CCCEEEECHHHHTTTTTTTCCSSHHHHHHHHH-HHHHHHHHHHHTTCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcccc--CCcEEEECChHHhhhhccccCCCHHHHHHHHH-HHHHHHHHHHHCCCEEE
Confidence 5899999999999999999999987 32 2335555532221 11111232222233333 22333455677889999
Q ss_pred EcCCCCchHHHHHHHHHHH------HcCCcEEEEEEecCHHHHHHHH
Q 047717 79 VDSLNSIKGYRYELWCLAR------AAGIRYCVLYCDLEEDHCRKWN 119 (303)
Q Consensus 79 vD~~n~~k~~R~~l~~~ak------~~~~~~~vI~l~~~~e~~~~R~ 119 (303)
+|..+.+..+|..+..++. ..+.+..+|||+||++++.+|+
T Consensus 103 ~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 103 TSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp EECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred EecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 9966555677877877766 3457799999999999999995
No 16
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.46 E-value=3.1e-13 Score=131.43 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=82.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---cCC-CccccCCCchhhH-HHHH-HH---HHHHHHhc-
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---FHL-DRNQSYASMPAEK-NLRG-VL---RSEVDRSV- 71 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~~~-~~~~~y~~~~~e~-~~r~-~l---~~~v~~~L- 71 (303)
.+|+|+|+|||||||+|+.|+++++..+++..++..|+.. .+. .....|.....+. ..+. .. ...+...|
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~L~ 115 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSYLA 115 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999998764443334434321 111 1123454332221 1111 11 12233445
Q ss_pred -CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCH-HHHHHHHHHhhh
Q 047717 72 -SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEE-DHCRKWNKERHE 124 (303)
Q Consensus 72 -~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~-e~~~~R~~~R~~ 124 (303)
..|.+||+|++|..+.+|..+.++++..+..+++|++.|+. +.+.+|+..|..
T Consensus 116 ~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~ 170 (520)
T 2axn_A 116 KEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKI 170 (520)
T ss_dssp HSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTT
T ss_pred hcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhh
Confidence 67899999999999999999999999889888899999984 555566655653
No 17
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.42 E-value=7.4e-13 Score=117.01 Aligned_cols=118 Identities=16% Similarity=0.142 Sum_probs=81.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCc----cccCCCch---hhHHHHHHHHHHHHHhcC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDR----NQSYASMP---AEKNLRGVLRSEVDRSVS 72 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~----~~~y~~~~---~e~~~r~~l~~~v~~~L~ 72 (303)
.+|+|+|+|||||||+|+.|++.++. .+++++.+.+. ... ...+.... .+..........+...+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 107 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSS 107 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHHHHh
Confidence 48999999999999999999998863 23444433221 000 00111111 111122233344555666
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
.|..||+|+++....++.++...++..+..+.++|+.+|.++|.+|+.+|..
T Consensus 108 ~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~~ 159 (253)
T 2p5t_B 108 LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRYE 159 (253)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHH
Confidence 7778999999887778888888888899999999999999999999988854
No 18
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.42 E-value=1.5e-12 Score=117.28 Aligned_cols=135 Identities=13% Similarity=0.170 Sum_probs=87.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccc------cCCCc---hhhHHHHHHHHHHHHHhcC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQ------SYASM---PAEKNLRGVLRSEVDRSVS 72 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~------~y~~~---~~e~~~r~~l~~~v~~~L~ 72 (303)
.+|+|+|+|||||||+|+.|++.++. ...+++.+.+...... .|... .....+.......+...+.
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~-----~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~ 108 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSD 108 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHh
Confidence 48999999999999999999998742 1234443222100000 01111 0112222223345666777
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHH----HHHHHHhhhcCC---CCCCHHHHHHHHHH
Q 047717 73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHC----RKWNKERHEKGE---AAYDDKIFEDLVRR 141 (303)
Q Consensus 73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~----~~R~~~R~~~~~---~~~~~e~~~~l~~r 141 (303)
.|..||+|+++....++.++...++..|.++.++++.+|++++ .+|+.+|...++ ...+.+..+.+..+
T Consensus 109 ~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~r 184 (287)
T 1gvn_B 109 QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKN 184 (287)
T ss_dssp HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 8889999999888777888888888888888889999999999 888887754332 23444555444444
No 19
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.42 E-value=3.2e-13 Score=111.07 Aligned_cols=113 Identities=20% Similarity=0.171 Sum_probs=67.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCC-ch--hhHHHH-----HHHHHHHHHhc--
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYAS-MP--AEKNLR-----GVLRSEVDRSV-- 71 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~-~~--~e~~~r-----~~l~~~v~~~L-- 71 (303)
++|+|+|+|||||||+|+.| +.++. .++..++.-........... .. ....++ ..+...+...+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 75 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGA-----KVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT 75 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTC-----EEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCC-----cEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 58999999999999999999 77654 34443321000000000000 00 001111 11223344455
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
..+..||+||. .....+..+.. ..+.++++||+++|.+++.+|+..|+.
T Consensus 76 ~~~~~vi~dg~-~~~~~~~~l~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~ 124 (179)
T 3lw7_A 76 SNHDLVVFDGV-RSLAEVEEFKR---LLGDSVYIVAVHSPPKIRYKRMIERLR 124 (179)
T ss_dssp CCCSCEEEECC-CCHHHHHHHHH---HHCSCEEEEEEECCHHHHHHHHHTCC-
T ss_pred cCCCeEEEeCC-CCHHHHHHHHH---HhCCCcEEEEEECCHHHHHHHHHhccC
Confidence 67789999996 55555544443 334678999999999999999999865
No 20
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.42 E-value=1.1e-12 Score=110.06 Aligned_cols=117 Identities=13% Similarity=0.122 Sum_probs=70.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---c-----CC--------CccccCCCchhhHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---F-----HL--------DRNQSYASMPAEKNLRGVLRS 65 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~-----~~--------~~~~~y~~~~~e~~~r~~l~~ 65 (303)
.+|+|+|+|||||||+|+.|++.++.. ++..++.. . .. ..+..+........+...+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~ 78 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYT-----HLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQ 78 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCe-----EEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHh
Confidence 489999999999999999999998753 22222110 0 00 000011110111112222222
Q ss_pred HHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 66 EVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 66 ~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
.+ ..+..+..||+|+.+.....+..+...+.....+.++||+++|++++.+|+.+|..
T Consensus 79 ~~-~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 136 (196)
T 1tev_A 79 TM-AANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK 136 (196)
T ss_dssp HH-HHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred hh-ccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence 22 23456789999998877665554544333222355799999999999999998864
No 21
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.40 E-value=2.1e-12 Score=108.24 Aligned_cols=117 Identities=16% Similarity=0.233 Sum_probs=66.4
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC---CCccccCCC------chhh--HHHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH---LDRNQSYAS------MPAE--KNLRGVLRSEVDR 69 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~---~~~~~~y~~------~~~e--~~~r~~l~~~v~~ 69 (303)
|++|+|+|+|||||||+|+.|+++++.. +..+.+++..... ..+...+.. ...+ ......+...+..
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 78 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQ--GINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAE 78 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTT--TCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999854 2334444311100 001111111 1011 1111122233455
Q ss_pred hc--CCCCEEEEcCCCCch---HH----HHHHHHHHHHcCCcEEEEEEecCHHHHHHH-HHH--hh
Q 047717 70 SV--SKDNIIIVDSLNSIK---GY----RYELWCLARAAGIRYCVLYCDLEEDHCRKW-NKE--RH 123 (303)
Q Consensus 70 ~L--~~~~~VIvD~~n~~k---~~----R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R-~~~--R~ 123 (303)
.+ ..+..||+|+..... ++ ..++. +.. .+.++||+++|++++.+| +.. |+
T Consensus 79 ~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~---~~~-~~~~vi~l~~~~~~~~~rr~~~~~R~ 140 (194)
T 1nks_A 79 EARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVI---TEI-NPSVIFLLEADPKIILSRQKRDTTRN 140 (194)
T ss_dssp HHHHTCSSEEEEEECSEEEETTEEEESSCHHHH---HHH-CCSEEEEEECCHHHHHHHHHHCTTTC
T ss_pred HhhccCCCEEEECCchhhccccccccCCCHHHH---Hhc-CCCEEEEEeCCHHHHHHHHHhhcccC
Confidence 66 788999999852111 11 01211 222 256799999999998865 666 64
No 22
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.39 E-value=2.4e-11 Score=105.90 Aligned_cols=154 Identities=12% Similarity=0.074 Sum_probs=90.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc---cccCCCch-hhHHHHHHHHH---------HHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR---NQSYASMP-AEKNLRGVLRS---------EVD 68 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~---~~~y~~~~-~e~~~r~~l~~---------~v~ 68 (303)
.+|+|.|+|||||||+++.|++.++. + ..++...+..-.... ...+.+.. ........++. .+.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~-~--~~~~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~ 103 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK-D--YDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVI 103 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT-T--SCEEEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCCH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc-C--CCceeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999975 3 345444322111000 01111110 00111111111 123
Q ss_pred HhcCCCCEEEEc----------CC--CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCC---HH
Q 047717 69 RSVSKDNIIIVD----------SL--NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYD---DK 133 (303)
Q Consensus 69 ~~L~~~~~VIvD----------~~--n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~---~e 133 (303)
.++..|.+||+| +. +....+.+.+...+.....+..+||+++|++++.+|+.+|+.. .++++ .+
T Consensus 104 ~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~-~dr~e~~~~~ 182 (229)
T 4eaq_A 104 PALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRD-QNRLDQEDLK 182 (229)
T ss_dssp HHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC------CCCHHHHH
T ss_pred HHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCC-ccchhhhhHH
Confidence 455688999999 53 2334445556555555567889999999999999999998642 23443 35
Q ss_pred HHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717 134 IFEDLVRRFEKPDRRNRWDSPLFELCPY 161 (303)
Q Consensus 134 ~~~~l~~r~E~P~~~~rwd~pl~~i~~~ 161 (303)
.++++...|++.... ...+.++|+.+
T Consensus 183 ~~~rv~~~y~~l~~~--~~~~~~vIDa~ 208 (229)
T 4eaq_A 183 FHEKVIEGYQEIIHN--ESQRFKSVNAD 208 (229)
T ss_dssp HHHHHHHHHHHHTTT--CTTTEEEEETT
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEEeCC
Confidence 667777777764322 22456778764
No 23
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.39 E-value=8.6e-12 Score=104.63 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=85.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc---cccCCC---chh-hH-----HHHHHHHHHHHHh
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR---NQSYAS---MPA-EK-----NLRGVLRSEVDRS 70 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~---~~~y~~---~~~-e~-----~~r~~l~~~v~~~ 70 (303)
+|+|+|+|||||||+|+.|++.+... +..++..++..-.... ...|.+ ... .. .....+...+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~--g~~~i~~d~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~i~~~ 79 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQK--GYFVSLYREPGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEEKIIPD 79 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999998543 2345544432110000 001100 000 00 0011333344556
Q ss_pred cCCCCEEEEcCCC------------CchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 047717 71 VSKDNIIIVDSLN------------SIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDL 138 (303)
Q Consensus 71 L~~~~~VIvD~~n------------~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l 138 (303)
+..+..||+|... ....+..++..+.+....+.++|||+||++++.+|+.+|+. .+ ..+.+.++
T Consensus 80 l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~--~~--~~~~~~~~ 155 (195)
T 2pbr_A 80 LKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNR--FE--NKEFLEKV 155 (195)
T ss_dssp HHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTC--CC--CHHHHHHH
T ss_pred HhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCc--cc--hHHHHHHH
Confidence 6788999999421 11112222222222222567899999999999999986543 11 56777777
Q ss_pred HHHhcCCCCCCCCCCceeeeCCC
Q 047717 139 VRRFEKPDRRNRWDSPLFELCPY 161 (303)
Q Consensus 139 ~~r~E~P~~~~rwd~pl~~i~~~ 161 (303)
...|+.+.... .+.++|+++
T Consensus 156 ~~~~~~~~~~~---~~~~~Id~~ 175 (195)
T 2pbr_A 156 RKGFLELAKEE---ENVVVIDAS 175 (195)
T ss_dssp HHHHHHHHHHS---TTEEEEETT
T ss_pred HHHHHHHHhhC---CCEEEEECC
Confidence 77777643211 366888763
No 24
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.38 E-value=7.8e-12 Score=106.17 Aligned_cols=150 Identities=15% Similarity=0.136 Sum_probs=83.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CCcc--------ccCC--CchhhHHHHHHHHHHHHHhc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LDRN--------QSYA--SMPAEKNLRGVLRSEVDRSV 71 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~~~--------~~y~--~~~~e~~~r~~l~~~v~~~L 71 (303)
+|+|+|+|||||||+|+.|++.++.. ++..++.... .... ..+. ...........+...+.. .
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~-----~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~-~ 95 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIP-----QISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNN-P 95 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS-G
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhc-c
Confidence 79999999999999999999998653 3333321000 0000 0000 000000111122222211 2
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHHHcCC-cEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCC-CC-C
Q 047717 72 SKDNIIIVDSLNSIKGYRYELWCLARAAGI-RYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKP-DR-R 148 (303)
Q Consensus 72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P-~~-~ 148 (303)
..+..||+|+.+....++..+..+++..+. +..+|||++|++++.+|+.+|++. ....+.+......|..- .+ .
T Consensus 96 ~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~---~~~~e~~~~r~~~~~~~~~~~~ 172 (201)
T 2cdn_A 96 DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRA---DDTDDVILNRMKVYRDETAPLL 172 (201)
T ss_dssp GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCT---TCSHHHHHHHHHHHHHHTTTHH
T ss_pred cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCC---CCCHHHHHHHHHHHHHhhHHHH
Confidence 345679999977666677666666665543 457999999999999999998641 12455554444434321 00 0
Q ss_pred CCCCCceeeeCCC
Q 047717 149 NRWDSPLFELCPY 161 (303)
Q Consensus 149 ~rwd~pl~~i~~~ 161 (303)
..+....++|+.+
T Consensus 173 ~~~~~~~~~Id~~ 185 (201)
T 2cdn_A 173 EYYRDQLKTVDAV 185 (201)
T ss_dssp HHTTTTEEEEECC
T ss_pred HHhcCcEEEEeCC
Confidence 1123356777753
No 25
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.36 E-value=4.7e-12 Score=107.75 Aligned_cols=117 Identities=17% Similarity=0.064 Sum_probs=68.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC-----CccccC--CCc-hhhHHH----H-HHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL-----DRNQSY--ASM-PAEKNL----R-GVLRSEVD 68 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~-----~~~~~y--~~~-~~e~~~----r-~~l~~~v~ 68 (303)
++|+|+|+|||||||+|+.|++.++.. + +++..++. .+- .....+ ... ..+..+ + ..+...+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~--g-~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~ 80 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK--R-DVYLTEWN-SSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYIL 80 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT--S-CEEEEETT-CCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc--C-CEEEecCC-cHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999864 2 44443322 110 000011 011 111111 0 01222334
Q ss_pred HhcCCCCEEEEcCCCCchHHHHH---------HHHHHHHcCCcEEEEEEecCHHHHHHHHH-Hhh
Q 047717 69 RSVSKDNIIIVDSLNSIKGYRYE---------LWCLARAAGIRYCVLYCDLEEDHCRKWNK-ERH 123 (303)
Q Consensus 69 ~~L~~~~~VIvD~~n~~k~~R~~---------l~~~ak~~~~~~~vI~l~~~~e~~~~R~~-~R~ 123 (303)
..+..+..||+|+..+. ...|+ +..+.+....+.++||+++|++++.+|+. +|+
T Consensus 81 ~~l~~g~~vi~D~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~ 144 (213)
T 2plr_A 81 PMLKSGFIVISDRYIYT-AYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR 144 (213)
T ss_dssp HHHHTTCEEEEESCHHH-HHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred HHHhCCCEEEEeCcHhH-HHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence 55678899999985432 11222 22232333446789999999999999998 775
No 26
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.35 E-value=8.5e-12 Score=106.06 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=73.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV 79 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv 79 (303)
.+|+|+|++||||||+++.|+..+... +.-+++++.+.+. ......|........++ .+..........+..||+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~--G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vi~ 102 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQK--GKLCYILDGDNVRHGLNRDLSFKAEDRAENIR-RVGEVAKLFADAGIICIA 102 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHH-HHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc--CceEEEecCchhhhHhhcccCcChHHHHHHHH-HHHHHHHHHHhCCceEEE
Confidence 489999999999999999999998643 2222344432221 11112233222222222 222233344467889999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHH
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWN 119 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~ 119 (303)
+..+..+.+|..+..+++ +..+.+|||++|.+++.+|.
T Consensus 103 ~~~~~~~~~r~~~~~~~~--~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 103 SLISPYRTDRDACRSLLP--EGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp ECCCCCHHHHHHHHHTSC--TTSEEEEEECCCHHHHHHHC
T ss_pred ecCCchHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhc
Confidence 988888888877765432 34678899999999999997
No 27
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.35 E-value=2.8e-12 Score=125.94 Aligned_cols=116 Identities=16% Similarity=0.216 Sum_probs=79.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV 79 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv 79 (303)
.+|+|+|+|||||||+|+.|++.|+..+ +..++.++.+.+ .......|........++ .+...+...+..|.+||+
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G-~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~-ri~~v~~~~~~~g~~VI~ 474 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQG-GRSVSLLLGDTVRHELSSELGFTREDRHTNIQ-RIAFVATELTRAGAAVIA 474 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHC-SSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHH-HHHHHHHHHHHTTCEEEE
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccC-CceEEEECcHHHHHHhccccCCChhHHHHHHH-HHHHHHHHHHhCCCEEEE
Confidence 5899999999999999999999998531 033455543221 111122333222222333 233344455678899999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHH
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~ 120 (303)
|..+.++..|..++.+.+..+ ++++|||+||.++|.+|..
T Consensus 475 ~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~~ev~~~R~~ 514 (573)
T 1m8p_A 475 APIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSDK 514 (573)
T ss_dssp ECCCCCHHHHHHHHHHHHTTS-EEEEEEECCCHHHHHHHCS
T ss_pred EcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCCHHHHHHHhc
Confidence 988878888988888776544 6789999999999999963
No 28
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.34 E-value=2e-11 Score=102.77 Aligned_cols=150 Identities=19% Similarity=0.132 Sum_probs=80.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc---cccC----CCchhhHH-----HHHHHHHHHHHh
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR---NQSY----ASMPAEKN-----LRGVLRSEVDRS 70 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~---~~~y----~~~~~e~~-----~r~~l~~~v~~~ 70 (303)
+|+|+|+|||||||+++.|++.+... +..++...+..-.... ...+ .+...+.. ....+.. +...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~--g~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-i~~~ 78 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR--GKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE-IKQY 78 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC--CC-EEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH-HTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEeeCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHH
Confidence 79999999999999999999999543 3445544432110000 0000 00011110 0112233 5556
Q ss_pred cCCCCEEEEcCC------------CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 047717 71 VSKDNIIIVDSL------------NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDL 138 (303)
Q Consensus 71 L~~~~~VIvD~~------------n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l 138 (303)
+..+..||+|.. +....+..++...+.....+..+|||++|++++.+|+.+|.. .-..+.+.++
T Consensus 79 l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~----~~~~~~~~~~ 154 (197)
T 2z0h_A 79 LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNR----FEKREFLERV 154 (197)
T ss_dssp ----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CC----CCCHHHHHHH
T ss_pred HhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccCc----ccHHHHHHHH
Confidence 778899999952 112233444444444445678899999999999999999843 1123666767
Q ss_pred HHHhcCCCCCCCCCCceeeeCCC
Q 047717 139 VRRFEKPDRRNRWDSPLFELCPY 161 (303)
Q Consensus 139 ~~r~E~P~~~~rwd~pl~~i~~~ 161 (303)
...|++.... ...+.++++.+
T Consensus 155 ~~~~~~~~~~--~~~~~~~Id~~ 175 (197)
T 2z0h_A 155 REGYLVLARE--HPERIVVLDGK 175 (197)
T ss_dssp HHHHHHHHHH--CTTTEEEEETT
T ss_pred HHHHHHHHHh--CCCCEEEEeCC
Confidence 6666542211 12345677753
No 29
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.34 E-value=7.2e-13 Score=111.61 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=71.7
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc-----CCCc----cccCC--CchhhHHHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF-----HLDR----NQSYA--SMPAEKNLRGVLRSEVDR 69 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~-----~~~~----~~~y~--~~~~e~~~r~~l~~~v~~ 69 (303)
|++|+|+|+|||||||+|+.|++.++.. ++..++... +... ...+. ...........+...+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~ 83 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYT-----HLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVA 83 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCe-----EEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHh
Confidence 3589999999999999999999998753 222221000 0000 00000 000012223345555666
Q ss_pred hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 70 SVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
.+..+..||+|+......++..+.. ....+.++||+++|++++.+|+.+|+.
T Consensus 84 ~~~~~~~vi~d~~~~~~~~~~~~~~---~~~~~~~vi~l~~~~e~~~~R~~~R~~ 135 (196)
T 2c95_A 84 KVNTSKGFLIDGYPREVQQGEEFER---RIGQPTLLLYVDAGPETMTQRLLKRGE 135 (196)
T ss_dssp HTTTCSCEEEESCCCSHHHHHHHHH---HTCCCSEEEEEECCHHHHHHHHHHHHT
T ss_pred ccccCCcEEEeCCCCCHHHHHHHHH---hcCCCCEEEEEECCHHHHHHHHHccCC
Confidence 6778899999996554444433332 234466899999999999999998863
No 30
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.33 E-value=2.9e-11 Score=104.28 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=92.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC---ccccCCC-------chhhHHH----H-HHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD---RNQSYAS-------MPAEKNL----R-GVLRSE 66 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~---~~~~y~~-------~~~e~~~----r-~~l~~~ 66 (303)
.+|+|.|++||||||+++.|++++... +..++...+.+-... -...+.+ ...+..+ | ..+...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~--~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~~ 84 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER--GIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGV 84 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999875 345555443321100 0001110 1111110 1 123334
Q ss_pred HHHhcCCCCEEEEcCCCC------------chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC---C
Q 047717 67 VDRSVSKDNIIIVDSLNS------------IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY---D 131 (303)
Q Consensus 67 v~~~L~~~~~VIvD~~n~------------~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~---~ 131 (303)
+..+|..|.+||+|-..+ -..+-+++...+.....|..+|||++|++++.+|+.+|+. .+.+ +
T Consensus 85 i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~--~dr~E~~~ 162 (213)
T 4edh_A 85 IRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGR--LDRFEQED 162 (213)
T ss_dssp HHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSS--CCTTTTSC
T ss_pred HHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC--cCcccccH
Confidence 556778999999996221 1122333343344446789999999999999999998853 1233 3
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717 132 DKIFEDLVRRFEKPDRRNRWDSPLFELCPY 161 (303)
Q Consensus 132 ~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~ 161 (303)
.+.++++...|+.-.. ....+.++|+.+
T Consensus 163 ~~~~~rv~~~y~~l~~--~~~~~~~vIDa~ 190 (213)
T 4edh_A 163 RRFFEAVRQTYLQRAA--QAPERYQVLDAG 190 (213)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTTEEEEETT
T ss_pred HHHHHHHHHHHHHHHH--HCCCcEEEEeCC
Confidence 5777777777764211 112357888865
No 31
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.33 E-value=9e-13 Score=111.28 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=73.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---c------CCCccccCC--CchhhHHHHHHHHHHHHHh
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---F------HLDRNQSYA--SMPAEKNLRGVLRSEVDRS 70 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~------~~~~~~~y~--~~~~e~~~r~~l~~~v~~~ 70 (303)
++|+|+|+|||||||+|+.|+++++.. ++..++.- . +..-...+. ...........+...+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~ 87 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFT-----HLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVAS 87 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCe-----EEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc
Confidence 489999999999999999999998753 22222110 0 000000000 0001122333455555566
Q ss_pred cCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 71 VSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 71 L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
+..+..||+|+.......+..+. +..+.+.++||+++|++++.+|+.+|..
T Consensus 88 ~~~~~~vi~dg~~~~~~~~~~l~---~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 88 LGDTRGFLIDGYPREVKQGEEFG---RRIGDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp TTSCSCEEEETCCSSHHHHHHHH---HHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred cccCccEEEeCCCCCHHHHHHHH---HhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 66788999999877666554443 3334566799999999999999998864
No 32
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.33 E-value=2.7e-12 Score=107.58 Aligned_cols=117 Identities=13% Similarity=0.078 Sum_probs=69.8
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---c--C--CCc--cccCCC--chhhHHHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---F--H--LDR--NQSYAS--MPAEKNLRGVLRSEVDR 69 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~--~--~~~--~~~y~~--~~~e~~~r~~l~~~v~~ 69 (303)
|++|+|+|+|||||||+|+.|++.++.. ++..|+.. . + ... ...+.. ..........+...+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~ 80 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWV-----HLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDA 80 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe-----EeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Confidence 3589999999999999999999998753 22222110 0 0 000 000000 00011122233333322
Q ss_pred hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 70 SVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
. .+..||+|+.+.....+..+...++....+.++||+++|.+++.+|+.+|..
T Consensus 81 ~--~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 133 (194)
T 1qf9_A 81 N--QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE 133 (194)
T ss_dssp S--TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred c--CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc
Confidence 2 5678999997766655555544433222456799999999999999999864
No 33
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.32 E-value=6.1e-12 Score=106.41 Aligned_cols=152 Identities=18% Similarity=0.170 Sum_probs=75.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc--cCCCccccCCCchhhHHHHH--HHH---HHHHHhcCCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS--FHLDRNQSYASMPAEKNLRG--VLR---SEVDRSVSKD 74 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~--~~~~~~~~y~~~~~e~~~r~--~l~---~~v~~~L~~~ 74 (303)
++|+|+|+|||||||+++.|+++++.. .+.+.. ..+ -...|.+......... .+. ..+...+..+
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~-------~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 72 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYE-------IFKEPVEENPY-FEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLE 72 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCE-------EECCCGGGCTT-HHHHTTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCc-------EEcccccccHH-HHHHHhCccccchhHHHHHHHHHHHHHHHhhccC
Confidence 379999999999999999999999752 122211 111 1122333211110000 111 1223344555
Q ss_pred CEEEEcCCCCch---------------HHHHHHHHHHH----H-------cCCcEEEEEEecCHHHHHHHHHHhhhcCCC
Q 047717 75 NIIIVDSLNSIK---------------GYRYELWCLAR----A-------AGIRYCVLYCDLEEDHCRKWNKERHEKGEA 128 (303)
Q Consensus 75 ~~VIvD~~n~~k---------------~~R~~l~~~ak----~-------~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~ 128 (303)
. ||+|...+.. ..+..+..+.. . ...+..+||+++|++++.+|+.+|++....
T Consensus 73 ~-vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r~~~~ 151 (205)
T 2jaq_A 73 N-IIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRSEEL 151 (205)
T ss_dssp C-EEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTCHHHH
T ss_pred C-EEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCChhhh
Confidence 4 9999865421 01111111111 1 134668999999999999999888542110
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCCCCceeeeCCCC
Q 047717 129 AYDDKIFEDLVRRFEKPDRRNRWDSPLFELCPYK 162 (303)
Q Consensus 129 ~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~ 162 (303)
..+.+....+...|+.-....++..+.++|+++.
T Consensus 152 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~ 185 (205)
T 2jaq_A 152 LIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL 185 (205)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS
T ss_pred cCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC
Confidence 0122444444444442111112345788888653
No 34
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.30 E-value=4.9e-12 Score=107.90 Aligned_cols=149 Identities=13% Similarity=0.109 Sum_probs=84.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC----------CccccCCCchhhHHHHH----HHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL----------DRNQSYASMPAEKNLRG----VLRSEV 67 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~----------~~~~~y~~~~~e~~~r~----~l~~~v 67 (303)
.+|+|+|+|||||||+|+.|+++++..++.. ..+.+...+. .....+........+.. .+ ..+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~--~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i 87 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV--KHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHM-NEI 87 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE--EEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH-HHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE--EEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence 3899999999999999999999998764443 2222221100 00001110000000000 11 134
Q ss_pred HHhcCCCCEEEEcCCCCc----hHHH----HHHH-HHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC-CHHHHHH
Q 047717 68 DRSVSKDNIIIVDSLNSI----KGYR----YELW-CLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY-DDKIFED 137 (303)
Q Consensus 68 ~~~L~~~~~VIvD~~n~~----k~~R----~~l~-~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~-~~e~~~~ 137 (303)
...+..+..||+|+..+. .+.+ .++. .+......+.++|||++|++++.+|+.+|.. ++ ..+...+
T Consensus 88 ~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~----r~~~~~~~~~ 163 (212)
T 2wwf_A 88 KSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEE----IYEKVETQKK 163 (212)
T ss_dssp HHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSS----TTCSHHHHHH
T ss_pred HHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcc----cccHHHHHHH
Confidence 455667889999985421 1111 1111 1111123567899999999999999876522 22 3566777
Q ss_pred HHHHhcCCCCCCCCCCceeeeCCC
Q 047717 138 LVRRFEKPDRRNRWDSPLFELCPY 161 (303)
Q Consensus 138 l~~r~E~P~~~~rwd~pl~~i~~~ 161 (303)
+...|+++.. ..+.++|+++
T Consensus 164 ~~~~~~~~~~----~~~~~~Id~~ 183 (212)
T 2wwf_A 164 IYETYKHFAH----EDYWINIDAT 183 (212)
T ss_dssp HHHHGGGGTT----CTTEEEEECS
T ss_pred HHHHHHHHhc----cCCEEEEECC
Confidence 7778876543 3457888764
No 35
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.30 E-value=4.7e-11 Score=102.35 Aligned_cols=169 Identities=14% Similarity=0.109 Sum_probs=91.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc---cccCC-----CchhhHHH----H-HHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR---NQSYA-----SMPAEKNL----R-GVLRSEVD 68 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~---~~~y~-----~~~~e~~~----r-~~l~~~v~ 68 (303)
..|+|.|+.||||||+++.|+++|.. +.+++...+.+-.... ...+. +...+..+ | ..+...+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~---~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~ 79 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVK---DYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVI 79 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT---TSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHC---CCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999964 4566665443211000 00010 11111110 1 12333455
Q ss_pred HhcCCCCEEEEcCCCC------------chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCH---H
Q 047717 69 RSVSKDNIIIVDSLNS------------IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDD---K 133 (303)
Q Consensus 69 ~~L~~~~~VIvD~~n~------------~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~---e 133 (303)
.+|.+|.+||+|-..+ ...+-.++...+...-.|..+||+++|++++.+|+.+|+.. .+++.. +
T Consensus 80 p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~-~dr~e~~~~~ 158 (205)
T 4hlc_A 80 PALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRD-QNRLDQEDLK 158 (205)
T ss_dssp HHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC--------CCHHHHH
T ss_pred HHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCc-ccchhccCHH
Confidence 6788999999996321 11122233333333346889999999999999999988753 244543 4
Q ss_pred HHHHHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHH
Q 047717 134 IFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLT 180 (303)
Q Consensus 134 ~~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~ 180 (303)
.++++.+.|..--. .......+|+.+. ++ ++..++|++.|.
T Consensus 159 f~~~v~~~Y~~l~~--~~~~~~~~IDa~~-~~---e~V~~~i~~~i~ 199 (205)
T 4hlc_A 159 FHEKVIEGYQEIIH--NESQRFKSVNADQ-PL---ENVVEDTYQTII 199 (205)
T ss_dssp HHHHHHHHHHHHHH--SCCTTEEEEETTS-CH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hCCCCEEEEECCC-CH---HHHHHHHHHHHH
Confidence 55666666643110 0112356777542 22 334455555444
No 36
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.28 E-value=7.9e-12 Score=106.72 Aligned_cols=150 Identities=18% Similarity=0.112 Sum_probs=78.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc----C--C----CccccCCCchhhHHH----HHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF----H--L----DRNQSYASMPAEKNL----RGVLRSEVD 68 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~----~--~----~~~~~y~~~~~e~~~----r~~l~~~v~ 68 (303)
+|+|+|+|||||||+|+.|++.++..++ ++..+.+... + + .....+.. ..+..+ +......+.
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~~~~--~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~i~ 87 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCAAGH--RAELLRFPERSTEIGKLLSSYLQKKSDVED-HSVHLLFSANRWEQVPLIK 87 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTC--CEEEEESSCTTSHHHHHHHHHHTTSSCCCH-HHHHHHHHHHHHTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC--cEEEeeCCCCCCcHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999987543 3333332210 0 0 00011111 011100 000002344
Q ss_pred HhcCCCCEEEEcCCCCc-----h---HH-HHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC-CHHHHHHH
Q 047717 69 RSVSKDNIIIVDSLNSI-----K---GY-RYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY-DDKIFEDL 138 (303)
Q Consensus 69 ~~L~~~~~VIvD~~n~~-----k---~~-R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~-~~e~~~~l 138 (303)
..+..+..||+|...+. . +. +..+..+......+.++||+++|++++.+|+..|.. .+ ..+..+.+
T Consensus 88 ~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~~----~~~~~~~~~~~ 163 (215)
T 1nn5_A 88 EKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHE----RYENGAFQERA 163 (215)
T ss_dssp HHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----C----TTCSHHHHHHH
T ss_pred HHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCcc----ccchHHHHHHH
Confidence 55677889999953210 0 00 111211212223467899999999999999964422 23 24566666
Q ss_pred HHHhcCCCCCCCCCCceeeeCCC
Q 047717 139 VRRFEKPDRRNRWDSPLFELCPY 161 (303)
Q Consensus 139 ~~r~E~P~~~~rwd~pl~~i~~~ 161 (303)
...|+..... ...+.++|+.+
T Consensus 164 ~~~~~~~~~~--~~~~~~~Id~~ 184 (215)
T 1nn5_A 164 LRCFHQLMKD--TTLNWKMVDAS 184 (215)
T ss_dssp HHHHHHHTTC--TTSCEEEEETT
T ss_pred HHHHHHHHHh--CCCCEEEEECC
Confidence 6666643221 12456777753
No 37
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=99.27 E-value=3.7e-11 Score=115.43 Aligned_cols=119 Identities=14% Similarity=0.153 Sum_probs=78.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC---C-CccccCCCchhh-HHHHH-HHH---HHHHHhc--
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH---L-DRNQSYASMPAE-KNLRG-VLR---SEVDRSV-- 71 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~---~-~~~~~y~~~~~e-~~~r~-~l~---~~v~~~L-- 71 (303)
+|+|+|+|||||||+++.|++.++..+.+.+.+..++.... . .....|+....+ ...+. +.. ..+...+
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~ 120 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSE 120 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999876544444443322111 0 112345443221 11121 111 1224455
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHH
Q 047717 72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKE 121 (303)
Q Consensus 72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~ 121 (303)
..|.++|+|++|..+.+|+.+.+.++..+..++.+++.|+...+..++..
T Consensus 121 ~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~ 170 (469)
T 1bif_A 121 EGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIV 170 (469)
T ss_dssp TCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHH
Confidence 56789999999999999999999999888777777777776555555544
No 38
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.27 E-value=1.9e-10 Score=99.06 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=92.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CC---ccc--cCC-------CchhhHH----HH-HHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LD---RNQ--SYA-------SMPAEKN----LR-GVL 63 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~---~~~--~y~-------~~~~e~~----~r-~~l 63 (303)
.+|+|.|++||||||+++.|++.|...+. ..++...+.+-. +. +.- .+. +...+.. .| ..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~-~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~ 82 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGI-RDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLV 82 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC-CcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHH
Confidence 48999999999999999999999987643 144444432211 00 000 000 1111211 11 123
Q ss_pred HHHHHHhcCCCCEEEEcCCCC------------chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC-
Q 047717 64 RSEVDRSVSKDNIIIVDSLNS------------IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY- 130 (303)
Q Consensus 64 ~~~v~~~L~~~~~VIvD~~n~------------~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~- 130 (303)
...+..+|..|.+||+|-..+ -..+-.++...+...-.|..+||+++|++++.+|..+|+.. +.+
T Consensus 83 ~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~--dr~E 160 (213)
T 4tmk_A 83 ETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGEL--DRIE 160 (213)
T ss_dssp HHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSC--CTTT
T ss_pred HHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCc--cchh
Confidence 334666788999999996221 11223333333434456899999999999999999999641 334
Q ss_pred --CHHHHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717 131 --DDKIFEDLVRRFEKPDRRNRWDSPLFELCPY 161 (303)
Q Consensus 131 --~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~ 161 (303)
..+.+.++...|+.-... ..+.++|+.+
T Consensus 161 ~~~~~f~~rv~~~y~~la~~---~~~~~vIDa~ 190 (213)
T 4tmk_A 161 QESFDFFNRTRARYLELAAQ---DKSIHTIDAT 190 (213)
T ss_dssp TSCHHHHHHHHHHHHHHHHT---CTTEEEEETT
T ss_pred hhHHHHHHHHHHHHHHHHHH---CCcEEEECCC
Confidence 357777777777642111 1357788764
No 39
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.27 E-value=1.8e-11 Score=105.03 Aligned_cols=113 Identities=17% Similarity=0.208 Sum_probs=74.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHH-----------HHHHHHHHHh
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLR-----------GVLRSEVDRS 70 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r-----------~~l~~~v~~~ 70 (303)
++|+|.|+|||||+|+|+.|+++++..+ +..++. + +...-..+...+.+. +.+...+...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~-----istGdl-l---R~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~ 71 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVH-----ISTGDI-L---REAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEV 71 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEE-----EEHHHH-H---HHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeE-----EcHHHH-H---HHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHh
Confidence 3578899999999999999999997642 222211 0 000000000001111 1233355666
Q ss_pred cCCCCEEEEcCCCCchHHHHHHHHHHHHcCC-cEEEEEEecCHHHHHHHHHHhh
Q 047717 71 VSKDNIIIVDSLNSIKGYRYELWCLARAAGI-RYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 71 L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
+.+...+|+||......+...|.......+. ..++|++++|.+++.+|+..|.
T Consensus 72 l~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~ 125 (206)
T 3sr0_A 72 FPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRR 125 (206)
T ss_dssp CCSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred hccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCc
Confidence 7777789999988888877777665555554 5689999999999999999884
No 40
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.27 E-value=6.4e-11 Score=100.85 Aligned_cols=152 Identities=20% Similarity=0.170 Sum_probs=87.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC----cc---ccCCCchhh----HHHHHHHHHHHHHh
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD----RN---QSYASMPAE----KNLRGVLRSEVDRS 70 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~----~~---~~y~~~~~e----~~~r~~l~~~v~~~ 70 (303)
++|+|.|+.||||||+++.|+++|... +.+++...+.+.... +. ....+...+ ...|..+...+..+
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~--g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~ 78 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKR--GKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQY 78 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999876 456666554321110 00 001111111 11122333456677
Q ss_pred cCCCCEEEEcCCCC------------chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 047717 71 VSKDNIIIVDSLNS------------IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDL 138 (303)
Q Consensus 71 L~~~~~VIvD~~n~------------~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l 138 (303)
|..|.+||+|-..+ ...+-+++...+...-.|..++|+++|++++.+|..+|.+- -..+.+.++
T Consensus 79 L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~----e~~ef~~rv 154 (197)
T 3hjn_A 79 LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRF----EKREFLERV 154 (197)
T ss_dssp HTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTT----CCHHHHHHH
T ss_pred HHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCcc----ccHHHHHHH
Confidence 89999999996321 11222333334443346889999999999999997665431 134666666
Q ss_pred HHHhcCCCCCCCCCCceeeeCCC
Q 047717 139 VRRFEKPDRRNRWDSPLFELCPY 161 (303)
Q Consensus 139 ~~r~E~P~~~~rwd~pl~~i~~~ 161 (303)
.+.|..-...+.| ...+|+++
T Consensus 155 ~~~y~~la~~~~~--~~~~IDa~ 175 (197)
T 3hjn_A 155 REGYLVLAREHPE--RIVVLDGK 175 (197)
T ss_dssp HHHHHHHHHHCTT--TEEEEETT
T ss_pred HHHHHHHHHhCCC--CEEEEcCC
Confidence 6666542111111 35667654
No 41
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=3e-12 Score=108.78 Aligned_cols=111 Identities=14% Similarity=0.199 Sum_probs=60.2
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---cCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEE
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---FHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNII 77 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~V 77 (303)
|..|+|+|+|||||||+++.|++.++.. ++..|+.. .+..-...|. ...+...+......+...+..+..|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~-----~i~~d~~~~~~~g~~i~~~~~-~~~~~~~~~~e~~~l~~l~~~~~~v 98 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVP-----FIDLDWYIEERFHKTVGELFT-ERGEAGFRELERNMLHEVAEFENVV 98 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSCHHHHHH-HHHHHHHHHHHHHHHHHHTTCSSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcchHHHHHHhCCcHHHHHH-hcChHHHHHHHHHHHHHHhhcCCcE
Confidence 5689999999999999999999998653 33323210 1110001111 1122333322222333444444444
Q ss_pred EEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHH-Hh
Q 047717 78 IVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK-ER 122 (303)
Q Consensus 78 IvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~-~R 122 (303)
|..| .....++..+ ...+. ...+||+++|.+++.+|+. .|
T Consensus 99 i~~g-gg~~~~~~~~-~~l~~---~~~vi~L~~~~e~l~~Rl~~~~ 139 (199)
T 3vaa_A 99 ISTG-GGAPCFYDNM-EFMNR---TGKTVFLNVHPDVLFRRLRIAK 139 (199)
T ss_dssp EECC-TTGGGSTTHH-HHHHH---HSEEEEEECCHHHHHHHHHHTG
T ss_pred EECC-CcEEccHHHH-HHHHc---CCEEEEEECCHHHHHHHHhcCC
Confidence 4433 2222222222 22222 3469999999999999998 44
No 42
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.25 E-value=6.3e-11 Score=98.93 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=67.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc----cCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS----FHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNII 77 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~----~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~V 77 (303)
.+|+|+|+|||||||+|+.|++.++..+++.+.++..... .+..-...+... +...+......+...+..+ |
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~l~~~--~ 80 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERG--DLVPDDLILELIREELAER--V 80 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTT--CCCCHHHHHHHHHHHCCSE--E
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcC--CcCCHHHHHHHHHHHhcCC--E
Confidence 3799999999999999999999887532111100000000 000000000000 0000111222344445544 9
Q ss_pred EEcCCCCchHHHHHHHHHHHHcCC-cEEEEEEecCHHHHHHHHHHhh
Q 047717 78 IVDSLNSIKGYRYELWCLARAAGI-RYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 78 IvD~~n~~k~~R~~l~~~ak~~~~-~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
|+|+.......+..+..++...+. +..+||+++|++++.+|+.+|.
T Consensus 81 i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 127 (186)
T 3cm0_A 81 IFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA 127 (186)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 999977665555555555555443 5689999999999999999885
No 43
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.24 E-value=8.9e-11 Score=97.73 Aligned_cols=117 Identities=15% Similarity=0.244 Sum_probs=72.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIII 78 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VI 78 (303)
.+|+|+|++||||||+++.|++.+... +..++.++.+.+. ......|.....+..++.. ... ...+ ..+.+++
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~--g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~ 81 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCH--GIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRI-AEV-AKLFADAGLVCI 81 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHH-HHH-HHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhC--CCcEEEECChHHHHHHhhccccccccHHHHHHHH-HHH-HHHHHHCCCEEE
Confidence 479999999999999999999988432 3345555432211 1111123222223333322 111 1223 4566666
Q ss_pred EcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHh
Q 047717 79 VDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER 122 (303)
Q Consensus 79 vD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R 122 (303)
.+....+...+.++..+.+..+.++.+|||+||++++.+|+.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 82 TSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred EecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence 66654444556666666666677889999999999999997643
No 44
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.23 E-value=1.3e-11 Score=120.46 Aligned_cols=114 Identities=18% Similarity=0.302 Sum_probs=76.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc--CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF--HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV 79 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~--~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv 79 (303)
.+|+|+|+|||||||+|+.|++.++.. +..+.+++.+.+ .+.....|.+......++ .+...+...++.|..||+
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~--G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~-~i~~~~~~~l~~G~~VI~ 449 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQAR--GRKVTLLDGDVVRTHLSRGLGFSKEDRITNIL-RVGFVASEIVKHNGVVIC 449 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECHHHHHHHTCTTCCSSHHHHHHHHH-HHHHHHHHHHHTTCEEEE
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhc--CCeEEEECchHhhhhhcccccccHHHHHHHHH-HHHHHHHHHHhCCCEEEE
Confidence 479999999999999999999998764 344555553321 111112333222222222 233345556678899999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHH
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~ 120 (303)
|+++.++.+|.++..+++. ..+++|||++|.++|.+|+.
T Consensus 450 d~~~~~~~~r~~~~~~l~~--~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 450 ALVSPYRSARNQVRNMMEE--GKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp ECCCCCHHHHHHHHTTSCT--TCEEEEEEECCGGGHHHHCC
T ss_pred EcCCCCHHHHHHHHHHhhc--CCEEEEEEeCCHHHHHHHhh
Confidence 9988888877776654433 24689999999999999986
No 45
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.23 E-value=4.9e-11 Score=104.72 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=68.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CC-------------ccccCCCchhhHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LD-------------RNQSYASMPAEKNLRGVLRSEV 67 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~-------------~~~~y~~~~~e~~~r~~l~~~v 67 (303)
++|+|+|+|||||||+|+.|++.++.. ++..++..-. +. ..+.+.. ...+. ..+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~-----~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~---~~~~~----~~~ 97 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYC-----HLSTGDLLREAAEKKTELGLKIKNIINEGKLVD---DQMVL----SLV 97 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCC---HHHHH----HHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe-----EEecHHHHHHHHhccchHHHHHHHHHhcCCCCc---HHHHH----HHH
Confidence 589999999999999999999998653 2332221000 00 0001111 11111 223
Q ss_pred HHhcC---CCCEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhh
Q 047717 68 DRSVS---KDNIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 68 ~~~L~---~~~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
...+. .+..+|+|+..........+.......+ .+..+|++++|++++.+|+.+|.
T Consensus 98 ~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~ 157 (243)
T 3tlx_A 98 DEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL 157 (243)
T ss_dssp HHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence 33333 3678999996666555555555444433 45689999999999999999986
No 46
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.23 E-value=2.8e-11 Score=104.23 Aligned_cols=118 Identities=13% Similarity=0.159 Sum_probs=69.7
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---------cCCCccccCC--CchhhHHHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---------FHLDRNQSYA--SMPAEKNLRGVLRSEVDR 69 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---------~~~~~~~~y~--~~~~e~~~r~~l~~~v~~ 69 (303)
|+.|+|+|+|||||||+|+.|++.++.. ++..++.- ++..-...+. ...........+...+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~ 79 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLA-----HLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDL 79 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCce-----EEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhc
Confidence 6789999999999999999999998753 33332210 0000000000 000011111122222222
Q ss_pred hcCCCCEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhh
Q 047717 70 SVSKDNIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
+..+..||+||..........+..+.+..+ .+..+||+++|++++.+|+..|..
T Consensus 80 -~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~ 134 (217)
T 3be4_A 80 -GVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCT 134 (217)
T ss_dssp -TTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEE
T ss_pred -cccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 345778999986555444444444333443 466899999999999999998853
No 47
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.22 E-value=4e-12 Score=112.80 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=41.8
Q ss_pred CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCC----CCC----CCCceeeeCCC
Q 047717 101 IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDR----RNR----WDSPLFELCPY 161 (303)
Q Consensus 101 ~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~----~~r----wd~pl~~i~~~ 161 (303)
.+.++||+++|++++.+|+.+|++..+...+.+.++.+..+|+.... ... ...|.++|+++
T Consensus 174 ~pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~ 242 (263)
T 1p5z_B 174 ELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVN 242 (263)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECC
T ss_pred CCCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECC
Confidence 57789999999999999999886532223467778887777764210 011 13578888875
No 48
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.22 E-value=2.6e-10 Score=99.78 Aligned_cols=154 Identities=18% Similarity=0.133 Sum_probs=85.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc---cccC--------CCchhhHH----HH-HHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR---NQSY--------ASMPAEKN----LR-GVLRS 65 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~---~~~y--------~~~~~e~~----~r-~~l~~ 65 (303)
.+|+|.|++||||||+++.|++.+...+... ++...+.+-.... .... -+...+.. -| ..+..
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~-~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~~ 106 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDH-ITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVEN 106 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCC-EEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCe-eeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999998764321 4443332110000 0000 01111210 01 12333
Q ss_pred HHHHhcCCCCEEEEcCCCC------------chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCC---
Q 047717 66 EVDRSVSKDNIIIVDSLNS------------IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAY--- 130 (303)
Q Consensus 66 ~v~~~L~~~~~VIvD~~n~------------~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~--- 130 (303)
.+..+|..|.+||+|-..+ -..+-+++...+...-.|..+||+++|++++.+|+.+|+. .+.+
T Consensus 107 ~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~--~dr~E~~ 184 (236)
T 3lv8_A 107 VIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGE--LDRIEKM 184 (236)
T ss_dssp THHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----C--CCTTTTS
T ss_pred HHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC--cchhhhh
Confidence 4566788999999995211 1112233333333334688999999999999999999863 1233
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717 131 DDKIFEDLVRRFEKPDRRNRWDSPLFELCPY 161 (303)
Q Consensus 131 ~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~ 161 (303)
..+.+.++...|+.-... ... .++|+.+
T Consensus 185 ~~~~~~rv~~~y~~la~~--~~~-~~vIDa~ 212 (236)
T 3lv8_A 185 DISFFERARERYLELANS--DDS-VVMIDAA 212 (236)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTT-EEEEETT
T ss_pred HHHHHHHHHHHHHHHHHH--CCC-EEEEeCC
Confidence 357778887777642110 111 6777754
No 49
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.21 E-value=7.3e-12 Score=107.93 Aligned_cols=119 Identities=13% Similarity=0.153 Sum_probs=68.8
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---------cCCCccccCCC--chhhHHHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---------FHLDRNQSYAS--MPAEKNLRGVLRSEVDR 69 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---------~~~~~~~~y~~--~~~e~~~r~~l~~~v~~ 69 (303)
|++|+|+|+|||||||+|+.|++.++.. ++..++.- .+..-...+.. ..........+...+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~ 78 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAA-----HLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTN 78 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCce-----EEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHh
Confidence 5689999999999999999999998753 33322110 00000000000 00011111123333321
Q ss_pred hcCCCCEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhh
Q 047717 70 SVSKDNIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
....+..||+|+.......+..+..++...+ .+..+||+++|.+++.+|+..|..
T Consensus 79 ~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~ 134 (220)
T 1aky_A 79 NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLI 134 (220)
T ss_dssp CGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEE
T ss_pred ccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCc
Confidence 2234567999985444444555544444444 345799999999999999998853
No 50
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.21 E-value=8.1e-12 Score=104.41 Aligned_cols=106 Identities=22% Similarity=0.198 Sum_probs=59.2
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---ccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEE
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNII 77 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~V 77 (303)
|+.|+|+|+|||||||+|+.|++.++.. ++..|+. ..+..-...+. ...+..++..-...+.........|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~-----~i~~d~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~v 78 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRI-----LYDSDKEIEKRTGADIAWIFE-MEGEAGFRRREREMIEALCKLDNII 78 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHTSCHHHHHH-HHHHHHHHHHHHHHHHHHHHSSSCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHcCCChhhHHH-HhCHHHHHHHHHHHHHHHHhcCCcE
Confidence 3589999999999999999999998754 3322221 01110001111 1122333322222333333445556
Q ss_pred EEcCCC--CchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHH
Q 047717 78 IVDSLN--SIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWN 119 (303)
Q Consensus 78 IvD~~n--~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~ 119 (303)
|..+.. .....|.. .+..+ .+||+++|.+++.+|+
T Consensus 79 i~~gg~~~~~~~~~~~----l~~~~---~vi~L~~~~e~l~~Rl 115 (185)
T 3trf_A 79 LATGGGVVLDEKNRQQ----ISETG---VVIYLTASIDTQLKRI 115 (185)
T ss_dssp EECCTTGGGSHHHHHH----HHHHE---EEEEEECCHHHHHHHH
T ss_pred EecCCceecCHHHHHH----HHhCC---cEEEEECCHHHHHHHH
Confidence 655533 22333322 23322 6999999999999999
No 51
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.20 E-value=1.1e-10 Score=100.13 Aligned_cols=114 Identities=11% Similarity=0.110 Sum_probs=69.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CCcc--------ccCCCc--hhhHHHHHHHHHHHHHhc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LDRN--------QSYASM--PAEKNLRGVLRSEVDRSV 71 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~~~--------~~y~~~--~~e~~~r~~l~~~v~~~L 71 (303)
.|+|+|+|||||||+|+.|++.++.. ++..++.... .... ..+... .........+...+.. .
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~-~ 75 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIP-----HISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGK-D 75 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTS-G
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-c
Confidence 48899999999999999999988653 3333221000 0000 000000 0011112122222221 2
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHHHcCC-cEEEEEEecCHHHHHHHHHHh
Q 047717 72 SKDNIIIVDSLNSIKGYRYELWCLARAAGI-RYCVLYCDLEEDHCRKWNKER 122 (303)
Q Consensus 72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-~~~vI~l~~~~e~~~~R~~~R 122 (303)
..+..+|+|+.......+..+...+...+. +..+||+++|.+++.+|+.+|
T Consensus 76 ~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 76 DCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred cccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 336789999977777666666665555554 347999999999999999998
No 52
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.19 E-value=1.2e-10 Score=99.65 Aligned_cols=111 Identities=16% Similarity=0.159 Sum_probs=68.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CC-------------ccccCCCchhhHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LD-------------RNQSYASMPAEKNLRGVLRSEVD 68 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~-------------~~~~y~~~~~e~~~r~~l~~~v~ 68 (303)
.|+|+|+|||||||+|+.|++.++.. ++..++.... .. ....+.. .......+...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~l~ 73 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIP-----HISTGDMFRAAIKNGTELGLKAKSFMDQGNLVP---DEVTIGIVHERLS 73 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Confidence 58899999999999999999998653 3333221000 00 0000110 1111212222221
Q ss_pred HhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCC-cEEEEEEecCHHHHHHHHHHh
Q 047717 69 RSVSKDNIIIVDSLNSIKGYRYELWCLARAAGI-RYCVLYCDLEEDHCRKWNKER 122 (303)
Q Consensus 69 ~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~-~~~vI~l~~~~e~~~~R~~~R 122 (303)
. ...+..+|+|+.......+..+...+...+. +..+||+++|.+++.+|+.+|
T Consensus 74 ~-~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 74 K-DDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp S-GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred c-ccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 1 1236789999976666666666665555554 347999999999999999998
No 53
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.18 E-value=9.8e-11 Score=101.33 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=68.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc-cCCCcc--------ccCCCc--hhhHHHHHHHHHHHHHhc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS-FHLDRN--------QSYASM--PAEKNLRGVLRSEVDRSV 71 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~-~~~~~~--------~~y~~~--~~e~~~r~~l~~~v~~~L 71 (303)
+|+|+|+|||||||+|+.|++.++.. ++..++.- ..+... ..+... .... .+...+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~-----~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~----~~~~~i~~~l 72 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLA-----HIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDD----ITIPMVLETL 72 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCE-----EEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHH----HHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe-----EEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHH----HHHHHHHHHH
Confidence 79999999999999999999998642 33332210 000000 000000 0011 1222333334
Q ss_pred CC--CCEEEEcCCCCchHHHHHHHHHHHHcC-CcEEEEEEecCHHHHHHHHHHhhh
Q 047717 72 SK--DNIIIVDSLNSIKGYRYELWCLARAAG-IRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 72 ~~--~~~VIvD~~n~~k~~R~~l~~~ak~~~-~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
.. +..||+|+......+...+...++..+ .+..+||+++|++++.+|+..|..
T Consensus 73 ~~~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 128 (223)
T 2xb4_A 73 ESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRI 128 (223)
T ss_dssp HHHCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCE
T ss_pred hcccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccC
Confidence 33 789999986554455555555444444 466899999999999999998863
No 54
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.18 E-value=3.9e-11 Score=104.40 Aligned_cols=156 Identities=10% Similarity=0.082 Sum_probs=87.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccC--CccEEEecCCccCCCc---cccCC----CchhhHH----HH-HHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEA--KETVRIIDEASFHLDR---NQSYA----SMPAEKN----LR-GVLRSEV 67 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~--~~~v~~~~~~~~~~~~---~~~y~----~~~~e~~----~r-~~l~~~v 67 (303)
.+|+|.|++||||||+++.|++.+...++ +..++...+.+-.... ...+. +...+.. -| +.+...+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~~~i 105 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFAGRREHLALVI 105 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999976410 2344444432210000 00110 1111110 01 1233345
Q ss_pred HHhcCCCCEEEEcCCCC------------chHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCC---H
Q 047717 68 DRSVSKDNIIIVDSLNS------------IKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYD---D 132 (303)
Q Consensus 68 ~~~L~~~~~VIvD~~n~------------~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~---~ 132 (303)
..+|..|.+||+|-..+ ...+-+++...+...-.|..+|||++|++++.+|+.+|+. .+.++ .
T Consensus 106 ~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~--~dr~E~~~~ 183 (227)
T 3v9p_A 106 EPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRM--PDKFESESD 183 (227)
T ss_dssp HHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCC--C---CCHHH
T ss_pred HHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccC--ccchhhhhH
Confidence 56778999999995321 1122333333333345689999999999999999998853 23444 3
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717 133 KIFEDLVRRFEKPDRRNRWDSPLFELCPY 161 (303)
Q Consensus 133 e~~~~l~~r~E~P~~~~rwd~pl~~i~~~ 161 (303)
+.++++...|+.-.. ....+.++|+.+
T Consensus 184 ef~~rv~~~Y~~la~--~~~~~~~vIDa~ 210 (227)
T 3v9p_A 184 AFFARTRAEYLRRAQ--EAPHRFVIVDSS 210 (227)
T ss_dssp HHHHHHHHHHHHHHH--HCTTTEEEEETT
T ss_pred HHHHHHHHHHHHHHH--HhcCCEEEEeCC
Confidence 677777777764211 112357888865
No 55
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.18 E-value=3.5e-11 Score=102.10 Aligned_cols=113 Identities=15% Similarity=0.189 Sum_probs=69.1
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC--------ccCCC-------ccccCCCchhhHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA--------SFHLD-------RNQSYASMPAEKNLRGVLRS 65 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~--------~~~~~-------~~~~y~~~~~e~~~r~~l~~ 65 (303)
|.+|+|+|+|||||||+|+.|++.++.. ++..|+. +.... ..+.+.. .......+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~-----~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~---~~~~~~~l~~ 86 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFV-----HLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVP---QEITLALLRN 86 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCE-----EEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCC---HHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCce-----EEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCC---HHHHHHHHHH
Confidence 6799999999999999999999988643 2222210 00000 0000110 1112224444
Q ss_pred HHHHhcCCC-CEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 66 EVDRSVSKD-NIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 66 ~v~~~L~~~-~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
.+...+..| ..+|+||..........+. .....+.++|||++|.+++.+|+.+|..
T Consensus 87 ~i~~~l~~g~~~~i~dg~~~~~~~~~~~~---~~~~~~~~~i~l~~~~e~~~~Rl~~R~~ 143 (203)
T 1ukz_A 87 AISDNVKANKHKFLIDGFPRKMDQAISFE---RDIVESKFILFFDCPEDIMLERLLERGK 143 (203)
T ss_dssp HHHHHHHTTCCEEEEETCCCSHHHHHHHH---HHTCCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCeEEEeCCCCCHHHHHHHH---HhcCCCCEEEEEECCHHHHHHHHHhccc
Confidence 555556665 6899999765444433322 2223356799999999999999998863
No 56
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.17 E-value=4e-11 Score=103.60 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=69.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCcc---ccCCC---chhhHHHHHHHHHHHHHhcCCCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRN---QSYAS---MPAEKNLRGVLRSEVDRSVSKDN 75 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~---~~y~~---~~~e~~~r~~l~~~v~~~L~~~~ 75 (303)
++|+|.|+|||||+|+|+.|+++++..+++..-++.....-+.... ..|-+ -.....+...+...+.+......
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~~~~~ 109 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVDKNC 109 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTTTCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcccccc
Confidence 5899999999999999999999997643221100000000000000 00000 00012222244444444455667
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 76 IIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 76 ~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
.+|+||......+.. .+.+......++|++++|.+++.+|+..|..
T Consensus 110 g~ilDGfPRt~~Qa~---~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~ 155 (217)
T 3umf_A 110 HFLIDGYPRELDQGI---KFEKEVCPCLCVINFDVSEEVMRKRLLKRAE 155 (217)
T ss_dssp EEEEETBCSSHHHHH---HHHHHTCCCSEEEEEECCHHHHHHHHSCC--
T ss_pred CcccccCCCcHHHHH---HHHHhCCccCEEEeccCCHHHHHHHHhcccc
Confidence 899999766555433 3334455677899999999999999998864
No 57
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.14 E-value=1.7e-11 Score=105.82 Aligned_cols=119 Identities=10% Similarity=0.091 Sum_probs=61.0
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC----ccCCCccccCCC--chhhHHHHHHHHHHHHH-hcCC
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA----SFHLDRNQSYAS--MPAEKNLRGVLRSEVDR-SVSK 73 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~----~~~~~~~~~y~~--~~~e~~~r~~l~~~v~~-~L~~ 73 (303)
|++|+|+|+|||||||+|+.|++.++..+++.+.++.... ..+..-...+.. ..........+...+.. .+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQE 84 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccccC
Confidence 5689999999999999999999999754322211110000 000000000000 00011111122222211 1122
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 74 DNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 74 ~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
..+|+||........ ..+......+.++||+++|.+++.+|+..|.
T Consensus 85 -~~~vidg~~~~~~~~---~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~ 130 (222)
T 1zak_A 85 -NGWLLDGYPRSYSQA---MALETLEIRPDTFILLDVPDELLVERVVGRR 130 (222)
T ss_dssp -TCEEEESCCCSHHHH---HHHHTTTCCCSEEEEEECCHHHHHHHHTTEE
T ss_pred -CcEEEECCCCCHHHH---HHHHHcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 345569844333222 2222222235689999999999999998774
No 58
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.14 E-value=2.7e-11 Score=101.21 Aligned_cols=156 Identities=16% Similarity=0.166 Sum_probs=80.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---ccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIII 78 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VI 78 (303)
++|+|+|+|||||||+|+.|++.++.. ++..|+. ..+......|.. ..+..++......+...+.....||
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~D~~~~~~~g~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~vi 76 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVG-----LLDTDVAIEQRTGRSIADIFAT-DGEQEFRRIEEDVVRAALADHDGVL 76 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHSSCHHHHHHH-HCHHHHHHHHHHHHHHHHHHCCSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCC-----EEeCchHHHHHcCCCHHHHHHH-hChHHHHHHHHHHHHHHHhcCCeEE
Confidence 589999999999999999999998754 3332321 011100011110 1112222222223333333445566
Q ss_pred EcCCCCc--hHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCC--CCCCHHHHHHHHHHhcCCCCCCCCCCc
Q 047717 79 VDSLNSI--KGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGE--AAYDDKIFEDLVRRFEKPDRRNRWDSP 154 (303)
Q Consensus 79 vD~~n~~--k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~--~~~~~e~~~~l~~r~E~P~~~~rwd~p 154 (303)
.++...+ ...|+.+ + .+ .+|||+||.+++.+|+.+|..... .....+.+..+....++... ..+
T Consensus 77 ~~g~~~v~~~~~~~~l----~-~~---~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~----~~~ 144 (184)
T 2iyv_A 77 SLGGGAVTSPGVRAAL----A-GH---TVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYR----RVA 144 (184)
T ss_dssp ECCTTGGGSHHHHHHH----T-TS---CEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHH----HHC
T ss_pred ecCCcEEcCHHHHHHH----c-CC---eEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHh----ccC
Confidence 6554322 2233322 1 23 589999999999999988753211 01123456655432221000 123
Q ss_pred eeeeCCCCcccccchHHHHHHHHHHHhc
Q 047717 155 LFELCPYKDAIENSSAAILDAVAYLTKK 182 (303)
Q Consensus 155 l~~i~~~~~~~~~~~~~~~ei~~~l~~~ 182 (303)
.++|+++... .+++++.|.+.
T Consensus 145 ~~~Idt~~~s-------~ee~~~~I~~~ 165 (184)
T 2iyv_A 145 TMRVDTNRRN-------PGAVVRHILSR 165 (184)
T ss_dssp SEEEECSSSC-------HHHHHHHHHTT
T ss_pred CEEEECCCCC-------HHHHHHHHHHH
Confidence 5777765222 46666666653
No 59
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.11 E-value=1.3e-11 Score=102.52 Aligned_cols=108 Identities=19% Similarity=0.089 Sum_probs=57.6
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC---ccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEE
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA---SFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNII 77 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~---~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~V 77 (303)
|+.|+|+|+|||||||+|+.|++.++..+ +-.|+. ..+......+. ...+...+......+.........|
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~l~~~~-----~d~d~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~~~l~~~~~~v 77 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDLDLVF-----LDSDFLIEQKFNQKVSEIFE-QKRENFFREQEQKMADFFSSCEKAC 77 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHHTCEE-----EEHHHHHHHHHTSCHHHHHH-HHCHHHHHHHHHHHHHHHTTCCSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCE-----EcccHHHHHHcCCCHHHHHH-HcCHHHHHHHHHHHHHHHHccCCEE
Confidence 55799999999999999999999987532 222211 01110000110 0012222222222233333344444
Q ss_pred EEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 78 IVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 78 IvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
|..+....-. +. .+.. ..+||+++|.+++.+|+.+|.
T Consensus 78 i~~g~~~~~~-~~-----l~~~---~~~i~l~~~~e~~~~R~~~r~ 114 (175)
T 1via_A 78 IATGGGFVNV-SN-----LEKA---GFCIYLKADFEYLKKRLDKDE 114 (175)
T ss_dssp EECCTTGGGS-TT-----GGGG---CEEEEEECCHHHHTTCCCGGG
T ss_pred EECCCCEehh-hH-----HhcC---CEEEEEeCCHHHHHHHHhccc
Confidence 4434332211 21 1222 359999999999999998873
No 60
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.10 E-value=8e-10 Score=95.79 Aligned_cols=168 Identities=15% Similarity=0.082 Sum_probs=82.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc-ccCCccEEE-ecCCccC-CCc--cccCC-----CchhhH----HHH-HHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE-SEAKETVRI-IDEASFH-LDR--NQSYA-----SMPAEK----NLR-GVLRSE 66 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~-~~~~~~v~~-~~~~~~~-~~~--~~~y~-----~~~~e~----~~r-~~l~~~ 66 (303)
.+|+|.|++||||||+++.|++.+.. .+ ..++. ..+.+-. +.. ...|. +...+- .-| ..+...
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~~~g--~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~~~~ 99 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSEIYG--VNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHFVKI 99 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHC--GGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhccC--ceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999987 53 34444 3222100 000 00111 111111 001 122233
Q ss_pred HHHhcCCCCEEEEcCCCC----chH--------HHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHH
Q 047717 67 VDRSVSKDNIIIVDSLNS----IKG--------YRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKI 134 (303)
Q Consensus 67 v~~~L~~~~~VIvD~~n~----~k~--------~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~ 134 (303)
+..+|..|.+||+|-..+ +.+ +-.++...+.. -.|..+||+++|++++.+|. +|.+ .+..+.+.
T Consensus 100 I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~rdr--~E~~~~e~ 175 (223)
T 3ld9_A 100 IKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-CKNG--YEFADMEF 175 (223)
T ss_dssp HHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC-------------------CHHH
T ss_pred HHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-ccCc--cccchHHH
Confidence 555778899999997321 111 11122222222 36889999999999999998 4433 12224577
Q ss_pred HHHHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHH
Q 047717 135 FEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYL 179 (303)
Q Consensus 135 ~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l 179 (303)
+.++...|+.-... ...+.++|+.+ .+++.. ..+.++++.+
T Consensus 176 ~~rv~~~y~~la~~--~~~~~~vIDa~-~sieeV-~~I~~~l~~~ 216 (223)
T 3ld9_A 176 YYRVRDGFYDIAKK--NPHRCHVITDK-SETYDI-DDINFVHLEV 216 (223)
T ss_dssp HHHHHHHHHHHHHH--CTTTEEEEESS-CSSSCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEcCC-CCHHHH-HHHHHHHHHH
Confidence 77777777542111 12367888865 334333 3344444433
No 61
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.08 E-value=5.4e-11 Score=98.10 Aligned_cols=108 Identities=18% Similarity=0.083 Sum_probs=59.9
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---cCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEE
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---FHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNII 77 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~V 77 (303)
|++|+|+|+|||||||+|+.|++.++.. ++..|+.. .+......+. ...+..++ .+...+...+..+..|
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~d~~~~~~~g~~~~~~~~-~~~~~~~~-~~~~~~~~~l~~~~~v 74 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYE-----FVDTDIFMQHTSGMTVADVVA-AEGWPGFR-RRESEALQAVATPNRV 74 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHHHCSCHHHHHH-HHHHHHHH-HHHHHHHHHHCCSSEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCc-----EEcccHHHHHHhCCCHHHHHH-HcCHHHHH-HHHHHHHHHhhcCCeE
Confidence 5799999999999999999999998753 22222110 0110000110 01112222 1211222234455566
Q ss_pred EEcCCC--CchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHH--Hh
Q 047717 78 IVDSLN--SIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK--ER 122 (303)
Q Consensus 78 IvD~~n--~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~--~R 122 (303)
|.++.. .....+..+ +. ...+|||++|.+++.+|+. .|
T Consensus 75 i~~g~~~~~~~~~~~~l----~~---~~~~i~l~~~~e~~~~R~~~~~r 116 (173)
T 1e6c_A 75 VATGGGMVLLEQNRQFM----RA---HGTVVYLFAPAEELALRLQASLQ 116 (173)
T ss_dssp EECCTTGGGSHHHHHHH----HH---HSEEEEEECCHHHHHHHHHHHHC
T ss_pred EECCCcEEeCHHHHHHH----Hc---CCeEEEEECCHHHHHHHHhhccC
Confidence 655532 223333322 22 2369999999999999998 77
No 62
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.07 E-value=6e-10 Score=92.98 Aligned_cols=121 Identities=15% Similarity=0.245 Sum_probs=62.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC--------ccCCCccccCCCch-hhHHHHHHHHHHHHHhcC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA--------SFHLDRNQSYASMP-AEKNLRGVLRSEVDRSVS 72 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~--------~~~~~~~~~y~~~~-~e~~~r~~l~~~v~~~L~ 72 (303)
.+|+|+|+|||||||+|+.|++.++..+....++..++. +........+.... ....+...+...+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 82 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMA- 82 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHH-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHHHHHHHhhc-
Confidence 389999999999999999999999843222333433321 11001111111111 11112212222233333
Q ss_pred CCCEEEEcCCCCch---HHHHHH-HHHHHHcCCcEEEEEEecCHHHHHH-HHHH--hhh
Q 047717 73 KDNIIIVDSLNSIK---GYRYEL-WCLARAAGIRYCVLYCDLEEDHCRK-WNKE--RHE 124 (303)
Q Consensus 73 ~~~~VIvD~~n~~k---~~R~~l-~~~ak~~~~~~~vI~l~~~~e~~~~-R~~~--R~~ 124 (303)
.+..||+|+..... ++...+ ..+.+.... ..+||+++|++++.+ |+.. |++
T Consensus 83 ~~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~~~~~~rRl~~~~R~r 140 (192)
T 1kht_A 83 KESPVAVDTHSTVSTPKGYLPGLPSWVLNELNP-DLIIVVETTGDEILMRRMSDETRVR 140 (192)
T ss_dssp TTSCEEEECCSEEEETTEEEESSCHHHHHHHCC-SEEEEEECCHHHHHHHHHTSSSCSS
T ss_pred cCCeEEEccceeccccccccccCcHHHHhccCC-CEEEEEeCCHHHHHHHHhhhcccCC
Confidence 45578889854311 110000 011222233 349999999999996 8877 654
No 63
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.06 E-value=2.4e-11 Score=101.22 Aligned_cols=102 Identities=17% Similarity=0.153 Sum_probs=56.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc--cCCC--ccccCCCc-hhhHHHHHHHHHHHHHhcCCCCE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS--FHLD--RNQSYASM-PAEKNLRGVLRSEVDRSVSKDNI 76 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~--~~~~--~~~~y~~~-~~e~~~r~~l~~~v~~~L~~~~~ 76 (303)
++|+|+|+|||||||+++.|++.++.. ++..++.. .... ....+... ..+..+.. .+...+..|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~-----~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~ 82 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLK-----YINVGDLAREEQLYDGYDEEYDCPILDEDRVVD----ELDNQMREGGV 82 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHTCEEEEETTTTEEEECHHHHHH----HHHHHHHHCCE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCe-----EEEHHHHHhhcchhhhhhhhhcCccCChHHHHH----HHHHHHhcCCE
Confidence 479999999999999999999998754 23222210 0000 00111111 11222222 22334444544
Q ss_pred EEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 77 IIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 77 VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
| +|..+.. .+. . +....+||++||.+++.+|+.+|+
T Consensus 83 v-v~~~~~~-~~~--------~-~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 83 I-VDYHGCD-FFP--------E-RWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp E-EECSCCT-TSC--------G-GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred E-EEechhh-hcc--------h-hcCCEEEEEECCHHHHHHHHHHcC
Confidence 4 4543311 100 0 114579999999999999999885
No 64
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.06 E-value=9.7e-11 Score=101.93 Aligned_cols=118 Identities=12% Similarity=0.070 Sum_probs=67.0
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC-CCcc--------ccCCC--chhhHHHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH-LDRN--------QSYAS--MPAEKNLRGVLRSEVDR 69 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~-~~~~--------~~y~~--~~~e~~~r~~l~~~v~~ 69 (303)
|+.|+|+|+|||||||+|+.|+++++.. ++..++.-.. .... ..+.. ..........+...+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~ 90 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVC-----HLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLET 90 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCc-----eecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhc
Confidence 5689999999999999999999998743 3333221000 0000 00000 00011111122222211
Q ss_pred hcCCCCEEEEcCCCCchHHHHHHHHHHHHc-CCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 70 SVSKDNIIIVDSLNSIKGYRYELWCLARAA-GIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~-~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
. ..+..||+|+..........+..++... ..+..+||+++|.+++.+|+..|..
T Consensus 91 ~-~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~ 145 (233)
T 1ak2_A 91 P-PCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLI 145 (233)
T ss_dssp G-GGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEE
T ss_pred c-cccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 1 1245689998554444455555444433 3467899999999999999998853
No 65
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.06 E-value=3.2e-10 Score=99.10 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=52.3
Q ss_pred CcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCC--------CCCCCceeeeCCCCcccccchHHH
Q 047717 101 IRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRR--------NRWDSPLFELCPYKDAIENSSAAI 172 (303)
Q Consensus 101 ~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~--------~rwd~pl~~i~~~~~~~~~~~~~~ 172 (303)
.+..+||+++|++++.+|+.+|++..+...+.+.+..+...|+.-... .....+.++|+++. +++.....+
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~-~~~~v~~~i 227 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVND-DFSEEVTKQ 227 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCS-CTTTCHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCC-ChhhCHHHH
Confidence 578899999999999999998875322222467777777777641100 01345788898764 444445566
Q ss_pred HHHHHHHHh
Q 047717 173 LDAVAYLTK 181 (303)
Q Consensus 173 ~ei~~~l~~ 181 (303)
+++++.|.+
T Consensus 228 ~~i~~~i~~ 236 (241)
T 2ocp_A 228 EDLMREVNT 236 (241)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666543
No 66
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.03 E-value=1.5e-09 Score=91.81 Aligned_cols=148 Identities=15% Similarity=0.116 Sum_probs=77.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC----CccccCC-----CchhhHHH----HHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL----DRNQSYA-----SMPAEKNL----RGVLRSEVD 68 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~----~~~~~y~-----~~~~e~~~----r~~l~~~v~ 68 (303)
.+|+|+|+|||||||+++.|++.++ +..++.+++..... .-...|. +...+..+ |......+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~----g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~ 80 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIP----ANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQ 80 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSC----GGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHC----CCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999872 12344444322000 0000111 11111100 000012334
Q ss_pred HhcCCCCEEEEcCCCCch-------HH-HHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCC-HHHHHHHH
Q 047717 69 RSVSKDNIIIVDSLNSIK-------GY-RYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYD-DKIFEDLV 139 (303)
Q Consensus 69 ~~L~~~~~VIvD~~n~~k-------~~-R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~-~e~~~~l~ 139 (303)
..+..+..||+|...+.. +. +..+..+......+.++||+++|++++.+ +|+. +.+. .+...++.
T Consensus 81 ~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~---d~~e~~~~~~rl~ 154 (204)
T 2v54_A 81 EQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGE---EIYEDVTFQQKVL 154 (204)
T ss_dssp HHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSS---STTCCSHHHHHHH
T ss_pred HHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCc---ccccHHHHHHHHH
Confidence 456678899999743211 01 11122222222346789999999999887 4532 2222 35666666
Q ss_pred HHhcCCCCCCCCCCceeeeCCC
Q 047717 140 RRFEKPDRRNRWDSPLFELCPY 161 (303)
Q Consensus 140 ~r~E~P~~~~rwd~pl~~i~~~ 161 (303)
..|+..... .....++++++
T Consensus 155 ~~y~~~~~~--~~~~~~~Id~~ 174 (204)
T 2v54_A 155 QEYKKMIEE--GDIHWQIISSE 174 (204)
T ss_dssp HHHHHHHTT--CSSCEEEECTT
T ss_pred HHHHHHHHh--CCCcEEEEECC
Confidence 666543221 12356778753
No 67
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.02 E-value=2.6e-09 Score=104.24 Aligned_cols=168 Identities=16% Similarity=0.220 Sum_probs=80.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIV 79 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIv 79 (303)
.+|+|+|++||||||+++.|+..+.... +..+.+++.+.+. ......|.....+...+ .+...++.....+.++|.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~-G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r-~i~~v~q~l~~~~~ivi~ 447 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMG-GRCVTLLDGDIVRRHLSSELGFSKAHRDVNVR-RIGFVASEITKNRGIAIC 447 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTC-SSCEEEESSHHHHHHTTSSCCCSHHHHHHHHH-HHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccC-CceEEEECCcHHHHhhccccCCCHHHHHHHHH-HHHHHHHHHHhcCCEEEE
Confidence 3799999999999999999999987431 1234445543221 11111233211122222 222222233346678888
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCceeeeC
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPLFELC 159 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl~~i~ 159 (303)
.+.......|.....+.+..+ .+.+||+++|.++|.+|.. |+-- .......+..+... -.+-+.|..+-++|+
T Consensus 448 ~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R~~-r~l~--~~~~~~~i~~l~~~---r~~~e~P~~adl~Id 520 (552)
T 3cr8_A 448 APIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESRDR-KGLY--AKARAGLIPEFTGV---SDPYEVPETPELAID 520 (552)
T ss_dssp CCCCCCHHHHHHHHHHHHTTS-EEEEEEECC-----------------------------------CCCCCCSSCSEEEC
T ss_pred ecCCccHHHHHHHHHHHHHcC-CEEEEEEcCCHHHHHHhcc-cccc--ccccHhHHHHHHhc---cccccCCCCCCEEEE
Confidence 775444566777777777766 6889999999999999964 2210 00011223333321 111222344668888
Q ss_pred CCCcccccchHHHHHHHHHHHh
Q 047717 160 PYKDAIENSSAAILDAVAYLTK 181 (303)
Q Consensus 160 ~~~~~~~~~~~~~~ei~~~l~~ 181 (303)
++...+ ++.+++|++.|.+
T Consensus 521 t~~~s~---~e~v~~Il~~L~~ 539 (552)
T 3cr8_A 521 TTGLAI---DEAVQQILLKLEH 539 (552)
T ss_dssp CSSCCH---HHHHHHHHHHHHH
T ss_pred CCCCCH---HHHHHHHHHHHHh
Confidence 753332 3445666665543
No 68
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.01 E-value=1.1e-10 Score=101.00 Aligned_cols=112 Identities=12% Similarity=0.070 Sum_probs=62.0
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---c------CCCccccCCC--chhhHHHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---F------HLDRNQSYAS--MPAEKNLRGVLRSEVDR 69 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~------~~~~~~~y~~--~~~e~~~r~~l~~~v~~ 69 (303)
|++|+|+|+|||||||+|+.|++.++.. ++..++.- . +..-...+.. ..........+...+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~ 81 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELK-----HLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKN 81 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSE-----EEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCe-----EEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhc
Confidence 4689999999999999999999998653 23222110 0 0000000000 00011111122222221
Q ss_pred hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 70 SVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 70 ~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
. .+..||+|+..........+ .....+..+||+++|.+++.+|+..|.
T Consensus 82 ~--~~~~~vid~~~~~~~~~~~l----~~~~~~~~vi~L~~~~~~~~~R~~~R~ 129 (227)
T 1zd8_A 82 L--TQYSWLLDGFPRTLPQAEAL----DRAYQIDTVINLNVPFEVIKQRLTARW 129 (227)
T ss_dssp C--TTSCEEEESCCCSHHHHHHH----HTTSCCCEEEEEECCHHHHHHHHTCEE
T ss_pred c--cCCCEEEeCCCCCHHHHHHH----HHhcCCCEEEEEECCHHHHHHHHHcCc
Confidence 1 35678899965443322212 122335579999999999999998874
No 69
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.00 E-value=5.4e-09 Score=87.52 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=84.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCc----hhhHHHHHHHHHHHHHhcCCCCEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASM----PAEKNLRGVLRSEVDRSVSKDNII 77 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~----~~e~~~r~~l~~~v~~~L~~~~~V 77 (303)
.+|+|+|++||||||+++.|+..++. .+ .++.+.+.......|... .....+...+...+...+..+..+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g-----~~-~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 76 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN-----SA-YIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDV 76 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS-----EE-EEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC-----eE-EEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 37899999999999999999875431 12 222211110000111111 111122223333333444566788
Q ss_pred EEcCCCCchHHHHHHHHHHH--HcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCce
Q 047717 78 IVDSLNSIKGYRYELWCLAR--AAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPL 155 (303)
Q Consensus 78 IvD~~n~~k~~R~~l~~~ak--~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl 155 (303)
|+|+.. ....+..+..+++ ..+....++++.+|.+++.+|...|..+ +..+++.+.. ...++.+.. ...
T Consensus 77 ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d--~~ld~~~~~~-~~~~~~~~~-----~~~ 147 (189)
T 2bdt_A 77 VLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD--EQMGERCLEL-VEEFESKGI-----DER 147 (189)
T ss_dssp EEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC------CGGGGHH-HHHHHHTTC-----CTT
T ss_pred EEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcccc--ccCCHHHHHH-HHHHhhcCC-----Ccc
Confidence 999853 3444444444433 3344667889999999999999988642 2334434444 333333211 123
Q ss_pred eeeCCCCcccccchHHHHHHHHHHHh
Q 047717 156 FELCPYKDAIENSSAAILDAVAYLTK 181 (303)
Q Consensus 156 ~~i~~~~~~~~~~~~~~~ei~~~l~~ 181 (303)
.+++++..++. .++++++.|.+
T Consensus 148 ~ii~tsh~~~~----~~e~~~~~i~~ 169 (189)
T 2bdt_A 148 YFYNTSHLQPT----NLNDIVKNLKT 169 (189)
T ss_dssp SEEECSSSCGG----GHHHHHHHHHH
T ss_pred EEEeCCCCChh----hHHHHHHHHhh
Confidence 45554433111 25777777773
No 70
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.00 E-value=2.7e-09 Score=91.35 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=61.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---------cCCCccccCC--CchhhHHHHHHHHHHHHHhc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---------FHLDRNQSYA--SMPAEKNLRGVLRSEVDRSV 71 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---------~~~~~~~~y~--~~~~e~~~r~~l~~~v~~~L 71 (303)
.|+|+|+|||||||+|+.|++.++.. ++..++.. .+..-...+. ...........+...+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~-----~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~- 75 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIP-----QISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQE- 75 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSG-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe-----EEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc-
Confidence 48999999999999999999998643 34332210 0000000000 0000112222222222111
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 72 SKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 72 ~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
..+..||+|+...... +...+......+..+||+++|.+++.+|+..|.
T Consensus 76 ~~~~~~i~dg~~~~~~---~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~ 124 (214)
T 1e4v_A 76 DCRNGFLLDGFPRTIP---QADAMKEAGINVDYVLEFDVPDELIVDRIVGRR 124 (214)
T ss_dssp GGGGCEEEESCCCSHH---HHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred ccCCCEEEeCCCCCHH---HHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence 1235789999543322 222222222245689999999999999998875
No 71
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.98 E-value=8.1e-11 Score=96.62 Aligned_cols=107 Identities=22% Similarity=0.232 Sum_probs=60.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---cCCCccccCCCchhhHHHHHHHHHHHHHhcC-CCCEEE
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---FHLDRNQSYASMPAEKNLRGVLRSEVDRSVS-KDNIII 78 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~-~~~~VI 78 (303)
.|+|+|+|||||||+|+.|++.++.. ++..|+.. .+..-...+.. ..+..++ .+...+...+. .+.+||
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~g~~~~~~~~~-~~~~~~~-~~~~~~l~~l~~~~~~Vi 74 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIP-----FYDVDEEVQKREGLSIPQIFEK-KGEAYFR-KLEFEVLKDLSEKENVVI 74 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSCHHHHHHH-SCHHHHH-HHHHHHHHHHTTSSSEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC-----EEECcHHHHHHcCCCHHHHHHH-hChHHHH-HHHHHHHHHHhccCCeEE
Confidence 69999999999999999999998753 33322210 01000001100 0112222 12122223343 566777
Q ss_pred EcCC--CCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 79 VDSL--NSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 79 vD~~--n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
.|+. .....+++.+ +. ...+||+++|.+++.+|+.+|.
T Consensus 75 ~~g~~~~~~~~~~~~l----~~---~~~~i~l~~~~e~~~~R~~~r~ 114 (168)
T 2pt5_A 75 STGGGLGANEEALNFM----KS---RGTTVFIDIPFEVFLERCKDSK 114 (168)
T ss_dssp ECCHHHHTCHHHHHHH----HT---TSEEEEEECCHHHHHHHCBCTT
T ss_pred ECCCCEeCCHHHHHHH----Hc---CCEEEEEECCHHHHHHHHhCCC
Confidence 7542 2233333332 22 3479999999999999998864
No 72
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.96 E-value=4.1e-09 Score=92.68 Aligned_cols=115 Identities=18% Similarity=0.243 Sum_probs=66.1
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccC---CccEEEecCCccCC--Cc---------cccCCCchh--hHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEA---KETVRIIDEASFHL--DR---------NQSYASMPA--EKNLRGVLR 64 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~---~~~v~~~~~~~~~~--~~---------~~~y~~~~~--e~~~r~~l~ 64 (303)
|.+|.|+|+|||||||+|+.|++.++..++ +..+.+++.+.+.. .. ...|.+... ...+...+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~~L~ 101 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTLK 101 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHHHHH
Confidence 468999999999999999999999886421 22344444333221 00 012222111 112222333
Q ss_pred HHHHH--------------------hcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 65 SEVDR--------------------SVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 65 ~~v~~--------------------~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
..... ......+||+||..... ...+. +..+ .+||+++|.+++.+|...|.
T Consensus 102 ~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~--~~~~~---~~~d---~vi~l~~~~e~~~~R~~~R~ 172 (252)
T 1uj2_A 102 EITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFY--SQEVR---DLFQ---MKLFVDTDADTRLSRRVLRD 172 (252)
T ss_dssp HHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTS--SHHHH---HHCS---EEEEEECCHHHHHHHHHHHH
T ss_pred HHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeecccc--CHHHH---HhcC---eeEEEeCCHHHHHHHHHHHH
Confidence 22210 01245789999966431 11222 2222 59999999999999998885
No 73
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.96 E-value=2.3e-09 Score=91.19 Aligned_cols=110 Identities=18% Similarity=0.267 Sum_probs=60.1
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHH-ccccCCccEEEecCCc-----cCCCccccCCC-c----hhhHHHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEAL-KESEAKETVRIIDEAS-----FHLDRNQSYAS-M----PAEKNLRGVLRSEVDR 69 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l-~~~~~~~~v~~~~~~~-----~~~~~~~~y~~-~----~~e~~~r~~l~~~v~~ 69 (303)
|.+|+|+|.|||||||+++.|++.+ +.. ++..|+.- ..... ..+.. . .....+...+......
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~-----~i~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~~l~~ 94 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCS-----VISQDDFFKPESEIETDK-NGFLQYDVLEALNMEKMMSAISCWMES 94 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEE-----EEEGGGGBCCGGGSCBCT-TSCBCCSSGGGBCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcE-----EEeCCccccCHhHhhccc-cCCChhHHHHHhHHHHHHHHHHHHHhC
Confidence 4589999999999999999999876 322 22222110 10000 11111 0 0111222122221211
Q ss_pred h-----------cCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 70 S-----------VSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 70 ~-----------L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
. .....+||+||..... ++ .+ ......+||+++|.+++.+|..+|+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~vi~eg~~~~~-~~-~~------~~~~d~~i~l~~~~~~~~~R~~~R~~ 152 (207)
T 2qt1_A 95 ARHSVVSTDQESAEEIPILIIEGFLLFN-YK-PL------DTIWNRSYFLTIPYEECKRRRSTRVY 152 (207)
T ss_dssp HTTSSCCC-----CCCCEEEEECTTCTT-CG-GG------TTTCSEEEEEECCHHHHHHHHHHSCC
T ss_pred CCCCCcCCCeeecCCCCEEEEeehHHcC-cH-HH------HHhcCeeEEEECCHHHHHHHHHHcCC
Confidence 1 1235789999965332 11 01 12345799999999999999988853
No 74
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.95 E-value=1.8e-10 Score=94.72 Aligned_cols=107 Identities=21% Similarity=0.138 Sum_probs=57.9
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc---cCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCE-
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS---FHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNI- 76 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~---~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~- 76 (303)
|..|+|+|.|||||||+|+.|++.++.. ++..|+.. .+......+.. ..+..++......+...+..+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~-----~id~D~~~~~~~g~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~~ 80 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLE-----VLDTDMIISERVGLSVREIFEE-LGEDNFRMFEKNLIDELKTLKTPH 80 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSCHHHHHHH-TCHHHHHHHHHHHHHHHHTCSSCC
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHhCCCHHHHHHH-hCHHHHHHHHHHHHHHHHhcCCCE
Confidence 6789999999999999999999999754 33332210 11100011100 01122221112223333344555
Q ss_pred EEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHh
Q 047717 77 IIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER 122 (303)
Q Consensus 77 VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R 122 (303)
||..+..+.-. +. ......+|||++|++++.+|+.+|
T Consensus 81 Vi~~g~g~~~~-~~--------l~~~~~vi~l~~~~e~~~~Rl~~r 117 (168)
T 1zuh_A 81 VISTGGGIVMH-EN--------LKGLGTTFYLKMDFETLIKRLNQK 117 (168)
T ss_dssp EEECCGGGGGC-GG--------GTTSEEEEEEECCHHHHHHHHCC-
T ss_pred EEECCCCEech-hH--------HhcCCEEEEEECCHHHHHHHHhcc
Confidence 55543221111 11 123467999999999999999877
No 75
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.94 E-value=8.4e-10 Score=96.27 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=24.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
+|+|.|+|||||||+|+.|++.++..
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~~ 36 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGAR 36 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 89999999999999999999998754
No 76
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.92 E-value=3.8e-08 Score=81.37 Aligned_cols=131 Identities=21% Similarity=0.252 Sum_probs=86.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS 81 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~ 81 (303)
.++.|+|++||||||+++.+. . +..++..+... +......+........+. .+.......+..+..+++|.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~---~----~~~~~~~d~~~-g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~ 80 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF---K----PTEVISSDFCR-GLMSDDENDQTVTGAAFD-VLHYIVSKRLQLGKLTVVDA 80 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS---C----GGGEEEHHHHH-HHHCSSTTCGGGHHHHHH-HHHHHHHHHHHTTCCEEEES
T ss_pred EEEEEECCCCCCHHHHHHHHc---c----CCeEEccHHHH-HHhcCcccchhhHHHHHH-HHHHHHHHHHhCCCeEEEEC
Confidence 379999999999999999742 1 11222211100 000000111111111111 23333444556678899999
Q ss_pred CCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717 82 LNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK 144 (303)
Q Consensus 82 ~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~ 144 (303)
++...+.+.+...+|++......++++|-|...+-.++.+|.. ..++++++..+...+..
T Consensus 81 ~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~---~~~~~~vi~~~~~~l~~ 140 (171)
T 4gp7_A 81 TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD---RQVEEYVIRKHTQQMKK 140 (171)
T ss_dssp CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS---CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC---CCCCHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999998865 36788888776665443
No 77
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.91 E-value=4.6e-10 Score=95.63 Aligned_cols=167 Identities=13% Similarity=0.148 Sum_probs=89.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc-c---------ccCC---CchhhHHHHHH----HHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR-N---------QSYA---SMPAEKNLRGV----LRS 65 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~-~---------~~y~---~~~~e~~~r~~----l~~ 65 (303)
+|+|+|++||||||+++.|++.++..+ ..+..+.+..++... . ..+. +...+..+... ...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g--~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAG--RSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVH 79 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEE--EEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcC--CeEEEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhHH
Confidence 799999999999999999999997542 233333222111000 0 0000 11111111100 012
Q ss_pred HHHHhcCCCCEEEEcCCCCchHHHHH-----------HHHHHHH-----cC--CcEEEEEEecCHHHHHHHHHHhhhc--
Q 047717 66 EVDRSVSKDNIIIVDSLNSIKGYRYE-----------LWCLARA-----AG--IRYCVLYCDLEEDHCRKWNKERHEK-- 125 (303)
Q Consensus 66 ~v~~~L~~~~~VIvD~~n~~k~~R~~-----------l~~~ak~-----~~--~~~~vI~l~~~~e~~~~R~~~R~~~-- 125 (303)
.+...+..+.+||+|+..+.. +-|+ +...+.. .+ .+..+||+++|++++.+|+.+|...
T Consensus 80 ~i~~~l~~g~~vi~D~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~ 158 (214)
T 1gtv_A 80 TIQGLCRGYDVVILDRYVASN-AAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDP 158 (214)
T ss_dssp HHHHEEEEEEEEEEEEEEHHH-HHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEBB
T ss_pred HHHHHhhCCCEEEECCCcccc-hhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHccccccc
Confidence 345567788999999964321 1111 1112222 12 5778999999999999999998652
Q ss_pred --CCCCC--CHHHHHHHHHHhcCCCCCCCCCCceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717 126 --GEAAY--DDKIFEDLVRRFEKPDRRNRWDSPLFELCPYKDAIENSSAAILDAVAYLTK 181 (303)
Q Consensus 126 --~~~~~--~~e~~~~l~~r~E~P~~~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~ 181 (303)
..+.+ ..+.+..+...|+...... +..+.++|+.+ . .++++.+.|..
T Consensus 159 ~~~~d~~e~~~~~~~~~~~~~~~~~~~~-~~~~~~vId~~-~-------~~~~v~~~i~~ 209 (214)
T 1gtv_A 159 GRARDNYERDAELQQRTGAVYAELAAQG-WGGRWLVVGAD-V-------DPGRLAATLAP 209 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHHHHEE-EEEEEEEEEEE-E-------BHHHHHHHHC-
T ss_pred ccccccccccHHHHHHHHHHHHHHHHhC-CCCCEEEEeCC-C-------CHHHHHHHhcC
Confidence 00112 2466666666665421100 01245666642 1 24677666653
No 78
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.90 E-value=1.9e-09 Score=95.03 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=24.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.+|.|+|++||||||+++.|++.|+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 589999999999999999999988754
No 79
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.87 E-value=3.4e-09 Score=94.98 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=29.4
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 74 DNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 74 ~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
..+||+|+...... .+. . ....+|||+||.+++.+|..+|.
T Consensus 181 ~~~vIveg~~l~~~---~~~---~---~~d~vI~l~a~~ev~~~Rl~~R~ 221 (281)
T 2f6r_A 181 KTLCVIDAAMLLEA---GWQ---S---MVHEVWTVVIPETEAVRRIVERD 221 (281)
T ss_dssp CCEEEEECTTTTTT---TGG---G---GCSEEEEEECCHHHHHHHHHHHH
T ss_pred CCEEEEEechhhcc---chH---H---hCCEEEEEcCCHHHHHHHHHHcC
Confidence 46899999764422 110 1 13469999999999999999885
No 80
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.87 E-value=2.4e-08 Score=84.84 Aligned_cols=116 Identities=18% Similarity=0.273 Sum_probs=62.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc-ccCCc---------------cEEEecCCccCCC-ccccCCCch-hhHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE-SEAKE---------------TVRIIDEASFHLD-RNQSYASMP-AEKNLRGVL 63 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~-~~~~~---------------~v~~~~~~~~~~~-~~~~y~~~~-~e~~~r~~l 63 (303)
.+|+|+|+|||||||+++.|++.++. ..... +...++.+.+... ....|.... ......+..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYGTL 92 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCeecCC
Confidence 47999999999999999999998742 11110 1111111100000 000000000 000000001
Q ss_pred HHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCC--cEEEEEEe-cCHHHHHHHHHHhhh
Q 047717 64 RSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGI--RYCVLYCD-LEEDHCRKWNKERHE 124 (303)
Q Consensus 64 ~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~--~~~vI~l~-~~~e~~~~R~~~R~~ 124 (303)
...+...++.|..||+|.. ..+.+ .+ +.... ...+||++ +|.+++.+|+.+|+.
T Consensus 93 ~~~i~~~l~~g~~vi~d~~--~~~~~----~l-~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~ 149 (204)
T 2qor_A 93 KSEYDLAVGEGKICLFEMN--INGVK----QL-KESKHIQDGIYIFVKPPSIDILLGRLKNRNT 149 (204)
T ss_dssp HHHHHHHHHTTCEEEEECC--HHHHH----HH-HHCSSCSCCEEEEEECSCHHHHHHHHHTCTT
T ss_pred HHHHHHHHHcCCeEEEEEC--HHHHH----HH-HHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC
Confidence 1234556678999999973 23332 12 22222 45789998 999999999998864
No 81
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.85 E-value=7.9e-10 Score=91.08 Aligned_cols=110 Identities=18% Similarity=0.212 Sum_probs=53.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc-----CCCccccCCCchhhHHHHHHHHHHHHHhcCCCCE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF-----HLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNI 76 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~-----~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~ 76 (303)
.+|+|+|+|||||||+++.|+..++.. +++.+.+ +..-...|. ...+..++..-...+........+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~-------~id~d~~~~~~~~~~i~~i~~-~~g~~~~~~~~~~~l~~l~~~~~~ 76 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNME-------FYDSDQEIEKRTGADVGWVFD-LEGEEGFRDREEKVINELTEKQGI 76 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCE-------EEEHHHHHHHHHTSCHHHHHH-HHHHHHHHHHHHHHHHHHHTSSSE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC-------EEeccHHHHHHhCcCHHHHHH-HHhHHHHHHHHHHHHHHHHhCCCe
Confidence 479999999999999999999988642 2221111 000000010 001111221111222233334445
Q ss_pred EEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 77 IIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 77 VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
++..+.... .......+.+..+ .++|+++|++++.+|..+|..
T Consensus 77 v~~~~~~~~--~~~~~~~~l~~~~---~~i~l~~~~~~l~~R~~~r~~ 119 (173)
T 1kag_A 77 VLATGGGSV--KSRETRNRLSARG---VVVYLETTIEKQLARTQRDKK 119 (173)
T ss_dssp EEECCTTGG--GSHHHHHHHHHHS---EEEECCCCHHHHHSCC-----
T ss_pred EEECCCeEE--ecHHHHHHHHhCC---EEEEEeCCHHHHHHHHhCCCC
Confidence 554321111 1112222334444 389999999999999988753
No 82
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.84 E-value=4.4e-09 Score=90.69 Aligned_cols=148 Identities=17% Similarity=0.144 Sum_probs=80.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC----ccccCC------CchhhHH----HHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD----RNQSYA------SMPAEKN----LRGVLRSEV 67 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~----~~~~y~------~~~~e~~----~r~~l~~~v 67 (303)
.+|+|.|++||||||+++.|++.+.. .+..+.+...+.. -...+. +...+.. -|..+...+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~-----~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~I 80 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP-----NCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKI 80 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS-----SEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc-----cceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999975 1333332211100 000111 1111110 111122345
Q ss_pred HHhcCCCCEEEEcCCCCchHHHHH------------HHHHHHHcCCcEEEEEE-ecCHHHHHHHHHHhhhcCCCCCC-HH
Q 047717 68 DRSVSKDNIIIVDSLNSIKGYRYE------------LWCLARAAGIRYCVLYC-DLEEDHCRKWNKERHEKGEAAYD-DK 133 (303)
Q Consensus 68 ~~~L~~~~~VIvD~~n~~k~~R~~------------l~~~ak~~~~~~~vI~l-~~~~e~~~~R~~~R~~~~~~~~~-~e 133 (303)
..+|..|.+||+|-..+ ...-|+ +..++...-.|..+||+ ++|++++.+|...|.. ++. .+
T Consensus 81 ~paL~~g~~VI~DRy~~-S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~d----r~E~~~ 155 (216)
T 3tmk_A 81 KKDLLEGKNIVMDRYVY-SGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDE----RYETVK 155 (216)
T ss_dssp HHHHHTTCEEEEESCHH-HHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCC----TTCCHH
T ss_pred HHHHHcCCEEEEeccHh-HHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcc----cccHHH
Confidence 56678999999997321 112111 11122222358899999 9999999998764432 332 45
Q ss_pred HHHHHHHHhcCCCCC--CCCCCceeeeC
Q 047717 134 IFEDLVRRFEKPDRR--NRWDSPLFELC 159 (303)
Q Consensus 134 ~~~~l~~r~E~P~~~--~rwd~pl~~i~ 159 (303)
.++++...|+.--.. .....+..+|+
T Consensus 156 f~~rvr~~Y~~la~~~~~~~~~~~~vID 183 (216)
T 3tmk_A 156 FQEKVKQTFMKLLDKEIRKGDESITIVD 183 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEe
Confidence 666666555541100 00123578888
No 83
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.80 E-value=7e-09 Score=86.75 Aligned_cols=103 Identities=16% Similarity=0.108 Sum_probs=56.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH-HccccCCccEEEecCCc--cCCCc--cccCCCc-h---hhHHHHHHHHHHHHHhcC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEA-LKESEAKETVRIIDEAS--FHLDR--NQSYASM-P---AEKNLRGVLRSEVDRSVS 72 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~-l~~~~~~~~v~~~~~~~--~~~~~--~~~y~~~-~---~e~~~r~~l~~~v~~~L~ 72 (303)
++|+|+|+|||||||+++.|++. ++.. ++..|+.. ..... ...+... . .+...... +...+.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~-----~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~----l~~~~~ 81 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQ-----HLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDF----MEPIMV 81 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEE-----EEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHH----HHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCE-----EeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHH----HHHHHh
Confidence 57999999999999999999998 5543 22222110 00000 0011110 0 12221212 233342
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
.+..+|+|..+. ..++ .. ....+||++||.+++.+|+.+|+
T Consensus 82 ~~g~~vi~~~~~-~~~~--------~~-~~~~vi~l~~~~e~~~~Rl~~R~ 122 (184)
T 1y63_A 82 SRGNHVVDYHSS-ELFP--------ER-WFHMVVVLHTSTEVLFERLTKRQ 122 (184)
T ss_dssp SSSEEEEECSCC-TTSC--------GG-GCSEEEEEECCHHHHHHHHHHTT
T ss_pred ccCCEEEeCchH-hhhh--------hc-cCCEEEEEECCHHHHHHHHHhCC
Confidence 234566776432 1111 11 12369999999999999999885
No 84
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.79 E-value=3e-09 Score=93.81 Aligned_cols=112 Identities=11% Similarity=0.084 Sum_probs=59.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc-CCCccccCCCchhhHHHHHHHHHHHHHhcCC-CCEEEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF-HLDRNQSYASMPAEKNLRGVLRSEVDRSVSK-DNIIIV 79 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~-~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~-~~~VIv 79 (303)
..|+|+|+|||||||+++.|++.++..+++.+..... .. +..-...|. ...+..+|..-...+...+.. ...||.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~--~~~g~~i~~i~~-~~ge~~fr~~e~~~l~~l~~~~~~~Via 125 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQ--AMKGTSVAEIFE-HFGESVFREKETEALKKLSLMYHQVVVS 125 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHH--HSTTSCHHHHHH-HHCHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHH--HhcCccHHHHHH-HhCcHHHHHHHHHHHHHHHhhcCCcEEe
Confidence 4699999999999999999999987532111100000 00 110001111 112334442222233344444 567777
Q ss_pred cCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHh
Q 047717 80 DSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER 122 (303)
Q Consensus 80 D~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R 122 (303)
+|..... +.+-+...+ . ..+||+++|.+++.+|+.+|
T Consensus 126 ~GgG~v~--~~~~~~~l~-~---~~vV~L~a~~e~l~~Rl~~~ 162 (250)
T 3nwj_A 126 TGGGAVI--RPINWKYMH-K---GISIWLDVPLEALAHRIAAV 162 (250)
T ss_dssp CCGGGGG--SHHHHHHHT-T---SEEEEEECCHHHHHHHHHC-
T ss_pred cCCCeec--CHHHHHHHh-C---CcEEEEECCHHHHHHHHhhc
Confidence 7632111 111222222 1 46999999999999999753
No 85
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.78 E-value=1.2e-08 Score=88.62 Aligned_cols=118 Identities=12% Similarity=0.124 Sum_probs=64.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC---C-ccCCCccccCCCc--hhhHHHHHHHHHHHHHhcCCCCE
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE---A-SFHLDRNQSYASM--PAEKNLRGVLRSEVDRSVSKDNI 76 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~---~-~~~~~~~~~y~~~--~~e~~~r~~l~~~v~~~L~~~~~ 76 (303)
-+.|.|+|||||||+|+.|++.++..+++..-++... . .++..-...+... .........+...+.+. .....
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~-~~~~g 88 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEA-DCANG 88 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSG-GGTTC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCc-ccCCC
Confidence 3678999999999999999999976432221111000 0 0000000000000 00112222333333221 12357
Q ss_pred EEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 77 IIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 77 VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
+|+||....... ...+.+....+..+|++++|.+++.+|+..|..
T Consensus 89 ~ILDGfPRt~~Q---a~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~ 133 (230)
T 3gmt_A 89 YLFDGFPRTIAQ---ADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRT 133 (230)
T ss_dssp EEEESCCCSHHH---HHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEE
T ss_pred eEecCCCCcHHH---HHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCc
Confidence 899996655433 222323233467899999999999999999964
No 86
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.78 E-value=1.6e-08 Score=86.16 Aligned_cols=30 Identities=30% Similarity=0.219 Sum_probs=26.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAK 31 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~ 31 (303)
++|+|.|++||||||+++.|++.|+..+++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 589999999999999999999999876433
No 87
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.78 E-value=1.3e-08 Score=86.02 Aligned_cols=28 Identities=39% Similarity=0.459 Sum_probs=25.1
Q ss_pred CE-EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 1 MA-LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 1 M~-LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|+ +|+|+|.|||||||+|+.|++.++..
T Consensus 1 m~~~i~i~G~~GsGKst~~~~la~~lg~~ 29 (208)
T 3ake_A 1 MRGIVTIDGPSASGKSSVARRVAAALGVP 29 (208)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 53 89999999999999999999998754
No 88
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.77 E-value=1.1e-08 Score=87.89 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=24.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.+|+|+|+|||||||+++.|++.++..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~ 32 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWH 32 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 479999999999999999999988643
No 89
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.75 E-value=3.1e-09 Score=90.04 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=24.0
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|.+|+|+|++||||||+++.|++ ++.
T Consensus 1 m~~i~i~G~~GsGKSTl~~~L~~-~g~ 26 (204)
T 2if2_A 1 MKRIGLTGNIGCGKSTVAQMFRE-LGA 26 (204)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH-TTC
T ss_pred CeEEEEECCCCcCHHHHHHHHHH-CCC
Confidence 78999999999999999999998 754
No 90
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.74 E-value=7.1e-09 Score=87.98 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.7
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|.+|.|+|+|||||||+++.|++ ++.
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~ 27 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGV 27 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCC
Confidence 35899999999999999999987 553
No 91
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.73 E-value=3e-08 Score=85.92 Aligned_cols=29 Identities=28% Similarity=0.194 Sum_probs=26.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEA 30 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~ 30 (303)
++|+|+|.+||||||+|+.|++.++...+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~ 43 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFY 43 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEE
Confidence 58999999999999999999999987543
No 92
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.72 E-value=3.1e-08 Score=90.66 Aligned_cols=139 Identities=15% Similarity=0.092 Sum_probs=81.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc---CCCc----cccCCCc---------h--hhHH-HH-H
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF---HLDR----NQSYASM---------P--AEKN-LR-G 61 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~---~~~~----~~~y~~~---------~--~e~~-~r-~ 61 (303)
..|+|.|+-||||||+++.|+++++.. ..++...+..- .... ...|.+. . .+.. .. .
T Consensus 8 ~fI~~EG~dGaGKTT~~~~La~~L~~~---~~v~~trEPg~~w~~~~g~e~ir~~~~d~~~~~~~~~~~~~~e~~~~~lQ 84 (334)
T 1p6x_A 8 VRIYLDGVYGIGKSTTGRVMASAASGG---SPTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQGNLAVDDAALITAHYQ 84 (334)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSGGGCS---SCEEEECCCHHHHHTSSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccC---CcEEEEeCCCCccccccchHHHHHHHHhhhhccccccCHHHHHHHHHHHH
Confidence 479999999999999999999999753 23555554431 0000 0112100 0 1100 00 0
Q ss_pred HHH--------HHHH---------HhcCCCCEEEEcCCCC-----chHHH--------HHHHHHHHHc---CCcEEEEEE
Q 047717 62 VLR--------SEVD---------RSVSKDNIIIVDSLNS-----IKGYR--------YELWCLARAA---GIRYCVLYC 108 (303)
Q Consensus 62 ~l~--------~~v~---------~~L~~~~~VIvD~~n~-----~k~~R--------~~l~~~ak~~---~~~~~vI~l 108 (303)
.++ ..+. .++..|.+||+|-..+ ....| .++..+.... -.|..+||+
T Consensus 85 Llf~a~la~ra~~~~~~i~~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~~yq~g~l~~~~i~~l~~~~~~~~~PDLtIyL 164 (334)
T 1p6x_A 85 SRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAARYLLGDMSMCALMAMVATLPREPQGGNIVVT 164 (334)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEECCCSCCSEEEEEESCTHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCCCTTEEEEEE
T ss_pred HHHHhHHHHHHHHHHHHHhhhccCccccCCCEEEEeCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHccCCCCCCEEEEE
Confidence 111 1121 2345678899996442 22222 1233332221 248999999
Q ss_pred ecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717 109 DLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK 144 (303)
Q Consensus 109 ~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~ 144 (303)
++|++++.+|+.+|++.. +.++.+.++++.+.|+.
T Consensus 165 d~~pe~~l~RI~~RgR~~-Eri~~eyl~~vr~~Y~~ 199 (334)
T 1p6x_A 165 TLNVEEHIRRLRTRARIG-EQIDITLIATLRNVYFM 199 (334)
T ss_dssp ECCHHHHHHHHHHHSCTT-CCCCHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHhcCCCc-ccCCHHHHHHHHHHHHH
Confidence 999999999999887532 45777777777777664
No 93
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.70 E-value=2e-08 Score=86.14 Aligned_cols=113 Identities=18% Similarity=0.071 Sum_probs=62.2
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEE---ecCCccC------CCccccCCCc----------------hh
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRI---IDEASFH------LDRNQSYASM----------------PA 55 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~---~~~~~~~------~~~~~~y~~~----------------~~ 55 (303)
|--|.|+|.+||||||+++.|++ ++...++.+.+. ....... ......|... ..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~ 87 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDA 87 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHH
Confidence 66899999999999999999988 665422222110 0000000 0111233211 01
Q ss_pred hHHHHHHHHHH----HHHhc--CCCCEEEEcCCCCch-HHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 56 EKNLRGVLRSE----VDRSV--SKDNIIIVDSLNSIK-GYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 56 e~~~r~~l~~~----v~~~L--~~~~~VIvD~~n~~k-~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
-+.+.+.+... +.+.+ ..+..||+|....+. .-- . +. -..+|+++||+++..+|+.+|.
T Consensus 88 ~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~---~---~~---~D~vi~V~ap~e~r~~Rl~~Rd 153 (210)
T 4i1u_A 88 RRRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRNW---K---AR---CDRVLVVDCPVDTQIARVMQRN 153 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHHH---H---HH---CSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCCc---c---cc---CCeEEEEECCHHHHHHHHHhcC
Confidence 11111112222 22222 245689999987665 211 1 11 2359999999999999999985
No 94
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.70 E-value=2.3e-08 Score=84.80 Aligned_cols=111 Identities=17% Similarity=0.192 Sum_probs=52.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCC--ch---------hhHHHHHHHHHHHH--
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYAS--MP---------AEKNLRGVLRSEVD-- 68 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~--~~---------~e~~~r~~l~~~v~-- 68 (303)
.+|.|+|.+||||||+++.|+..+... +..+.+.+.+.+.......+.. .. +...++..++....
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~~~ 100 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQ--GISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKAS 100 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhc--CCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHhcC
Confidence 589999999999999999999988543 3345555433222211000100 00 01111111111100
Q ss_pred -------------------HhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 69 -------------------RSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 69 -------------------~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
..+..+.+||+|+....... +. .. -..+|||+||.+++.+|..+|.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~~---~~---~d~~i~v~~~~~~~~~R~~~R~ 165 (201)
T 1rz3_A 101 HQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE---WR---PF---FDFVVYLDCPREIRFARENDQV 165 (201)
T ss_dssp SEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTT---TG---GG---CSEEEEECCC------------
T ss_pred CccccCceeccCCCCCCceEEeCCCcEEEEechhhccHH---HH---hh---cCEEEEEeCCHHHHHHHHhcCC
Confidence 01235679999998654321 11 11 2369999999999999999885
No 95
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.66 E-value=4.4e-07 Score=76.39 Aligned_cols=114 Identities=12% Similarity=0.117 Sum_probs=59.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHH------------------
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVL------------------ 63 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l------------------ 63 (303)
.+|+|+|++||||||+++.|+..+....+...... .....+......|..... ..+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALAEIKISISHTT-RPKRPGDQEGVDYFFIDE-TRFQAMVKEGAFLEHATIYERHYGT 85 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEEC-SCCCTTCCBTTTBEECCH-HHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCCeEEeceecc-CCCchhHhcCceEEeccH-HHHHHHHhcCcEEeeeeeecccccc
Confidence 38999999999999999999987632110000000 000000001111211100 1111111
Q ss_pred -HHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEec-CHHHHHHHHHHhhh
Q 047717 64 -RSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDL-EEDHCRKWNKERHE 124 (303)
Q Consensus 64 -~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~-~~e~~~~R~~~R~~ 124 (303)
...+...+..+..+|+|.. ..+ +..+.+..... .+||+.+ +.+++.+|+.+|+.
T Consensus 86 ~~~~i~~~l~~g~~vi~d~~--~~~----~~~~~~~~~~~-~~v~~~~~~~e~l~~Rl~~R~~ 141 (205)
T 3tr0_A 86 EKDWVLRQLKAGRDVLLEID--WQG----ARQIRELFPPA-LSIFILPPSIEALRERLIKRRQ 141 (205)
T ss_dssp EHHHHHHHHHTTCEEEEECC--HHH----HHHHHHHCTTC-EEEEEECSCHHHHHHHHHTCTT
T ss_pred hHHHHHHHHHcCCeEEEEEC--HHH----HHHHHHhCCCc-EEEEEECcCHHHHHHHHHHhCC
Confidence 1245566778889999972 222 22233333333 4555544 69999999999865
No 96
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.65 E-value=6e-07 Score=74.76 Aligned_cols=159 Identities=14% Similarity=0.175 Sum_probs=84.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccC--CC--ccccCCCchhh--HHHHHHHHHHHHHhcCCCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFH--LD--RNQSYASMPAE--KNLRGVLRSEVDRSVSKDN 75 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~--~~--~~~~y~~~~~e--~~~r~~l~~~v~~~L~~~~ 75 (303)
.+|+|+|+|||||||+++.|+..++ ...+.++.+.+. .. ....|.....+ ..+.+.+..........+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~-----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 84 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPG-----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGY 84 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSS-----SCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhccC-----CCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccCC
Confidence 3899999999999999999987632 233444433210 00 01123222111 1222222222222334566
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCce
Q 047717 76 IIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRNRWDSPL 155 (303)
Q Consensus 76 ~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~rwd~pl 155 (303)
.+++|+.... ..+..+ +..+.+...+++.++.+++.+|...|.... ..+++.+..+...++... .+ ..
T Consensus 85 ~~~~~~~~~~-~~l~~~----~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~--lld~~~~~~~~~~~~~l~---~~--~~ 152 (191)
T 1zp6_A 85 FVILDGVVRP-DWLPAF----TALARPLHYIVLRTTAAEAIERCLDRGGDS--LSDPLVVADLHSQFADLG---AF--EH 152 (191)
T ss_dssp EEEECSCCCT-TTTHHH----HTTCSCEEEEEEECCHHHHHHHHHTTCTTS--CCCHHHHHHHHHHTTCCG---GG--GG
T ss_pred eEEEeccCcH-HHHHHH----HhcCCCeEEEEecCCHHHHHHHHHhcCCCc--cCCHHHHHHHHHHHhccC---cc--cc
Confidence 7888985321 111111 122445678999999999999999885321 225677777777666421 12 23
Q ss_pred eeeCCCCcccccchHHHHHHHHHHH
Q 047717 156 FELCPYKDAIENSSAAILDAVAYLT 180 (303)
Q Consensus 156 ~~i~~~~~~~~~~~~~~~ei~~~l~ 180 (303)
+++++++..++ +.+++|++.|.
T Consensus 153 ~~i~t~~~~~~---~~~~~i~~~l~ 174 (191)
T 1zp6_A 153 HVLPVSGKDTD---QALQSAINALQ 174 (191)
T ss_dssp GEEECTTCCTT---TTTTTTHHHHH
T ss_pred cEEECCCCCHH---HHHHHHHHHHH
Confidence 55655433322 23455555554
No 97
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.64 E-value=4.8e-08 Score=82.60 Aligned_cols=27 Identities=22% Similarity=0.307 Sum_probs=24.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.+|.|+|.+||||||+|+.|++.++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~ 39 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAH 39 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 479999999999999999999987653
No 98
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.64 E-value=1.9e-07 Score=85.35 Aligned_cols=134 Identities=16% Similarity=0.258 Sum_probs=77.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc----cCC--------Cccc---------cC-CCchhhHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS----FHL--------DRNQ---------SY-ASMPAEKNL 59 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~----~~~--------~~~~---------~y-~~~~~e~~~ 59 (303)
++|+|+|++||||||+|..|++.++.. ++..|... +.+ .... .+ ........+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~e-----iIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F 115 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLE-----VINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADF 115 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEE-----EEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCc-----EEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHH
Confidence 489999999999999999999998743 22222110 000 0000 01 112233455
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCC--CchHHHHHH--------H------HHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 60 RGVLRSEVDRSVSKDNIIIVDSLN--SIKGYRYEL--------W------CLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 60 r~~l~~~v~~~L~~~~~VIvD~~n--~~k~~R~~l--------~------~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
+......+.....++.++|+-|.. |++...+.+ . .+........++|+|.++.+++.+|+.+|.
T Consensus 116 ~~~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R~ 195 (339)
T 3a8t_A 116 RSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRV 195 (339)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHhhc
Confidence 545555666667788888887653 333221100 0 000013356789999999999999999986
Q ss_pred hcCCCCCCHHHHHHHHHHhc
Q 047717 124 EKGEAAYDDKIFEDLVRRFE 143 (303)
Q Consensus 124 ~~~~~~~~~e~~~~l~~r~E 143 (303)
.. .+....++++..-|+
T Consensus 196 ~~---Ml~~Gl~eEv~~L~~ 212 (339)
T 3a8t_A 196 DD---MLELGMFDELAEFYS 212 (339)
T ss_dssp HH---HHHHTHHHHHHHHCC
T ss_pred cH---hhhccHHHHHHHHHH
Confidence 41 223344555555454
No 99
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.63 E-value=4.2e-08 Score=83.96 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.+|+|+|.+||||||+++.|++ ++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~ 29 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGI 29 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCC
Confidence 4899999999999999999987 653
No 100
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.61 E-value=1.6e-08 Score=87.70 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=38.7
Q ss_pred CCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcCCCCCC--CCCCceeeeCCC
Q 047717 100 GIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRN--RWDSPLFELCPY 161 (303)
Q Consensus 100 ~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~P~~~~--rwd~pl~~i~~~ 161 (303)
..+..+||+++|++++.+|+.+|++..+...+.+.+.++...|+.-.... ....+.++|+.+
T Consensus 145 ~~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~ 208 (230)
T 2vp4_A 145 VQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDAD 208 (230)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECC
Confidence 35788999999999999999888643221123456666666665421000 123456888764
No 101
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.61 E-value=1.8e-07 Score=78.85 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
+|+|+|++||||||+++.|+..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 79999999999999999999876
No 102
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.55 E-value=1.9e-08 Score=84.65 Aligned_cols=24 Identities=38% Similarity=0.326 Sum_probs=22.2
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
|.+|+|+|.|||||||+|+.|++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999999987
No 103
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.54 E-value=4.3e-07 Score=82.65 Aligned_cols=27 Identities=33% Similarity=0.456 Sum_probs=24.5
Q ss_pred CE-EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 1 MA-LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 1 M~-LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|+ +|+|+|++||||||+|+.|++.++.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~ 31 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPC 31 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 44 8999999999999999999999864
No 104
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.50 E-value=3.1e-07 Score=78.23 Aligned_cols=114 Identities=11% Similarity=0.071 Sum_probs=55.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc-ccCCccEEEecCCccCCCccccCCCchhhHHHHH-------------------
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE-SEAKETVRIIDEASFHLDRNQSYASMPAEKNLRG------------------- 61 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~-~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~------------------- 61 (303)
.+|+|+|++||||||+++.|+..+.. ....... .......+...+..|.... ...+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~-~tr~~~~~e~~g~~y~~~~-~~~f~~~~~~~~~le~~~~~~~~yg 86 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISM-TTRLPREGEQDGVDYYFRS-REVFEQAIKDGKMLEYAEYVGNYYG 86 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCE-ESSCCCTTCCBTTTBEECC-HHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEec-ccccCcCcccCCceeEEec-HHHHHHHHhcCcEEEEEEEccccCC
Confidence 38999999999999999999988743 1100000 0000000000001111000 000110
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC-HHHHHHHHHHhhh
Q 047717 62 VLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE-EDHCRKWNKERHE 124 (303)
Q Consensus 62 ~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~-~e~~~~R~~~R~~ 124 (303)
.....+...+..|..||+|. ...+.+ .+.+....+ .+||+.+| .+++.+|+.+|+.
T Consensus 87 ~~~~~i~~~l~~g~~vild~--~~~g~~----~~~~~~~~~-~~i~i~~ps~~~l~~Rl~~R~~ 143 (208)
T 3tau_A 87 TPLEYVEEKLAAGVDIFLEI--EVQGAM----QVRKAMPEG-IFIFLTPPDLSELKNRIIGRGT 143 (208)
T ss_dssp EEHHHHHHHHHTTCCEEEEC--CHHHHH----HHHHHCTTS-EEEEEECTTTTTSSCC------
T ss_pred CcHHHHHHHHHcCCeEEEEe--eHHHHH----HHHHhCCCe-EEEEEeCCCHHHHHHHHHhcCC
Confidence 11123556677899999998 233322 223333333 45666554 8899999998864
No 105
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.48 E-value=6.6e-07 Score=81.51 Aligned_cols=118 Identities=20% Similarity=0.277 Sum_probs=64.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCc----------cccCCCchhhHHHHHHHHHHHH-H--
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDR----------NQSYASMPAEKNLRGVLRSEVD-R-- 69 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~----------~~~y~~~~~e~~~r~~l~~~v~-~-- 69 (303)
+|.|+|++||||||+++.|+..+....-+..+.+++.+++.... ...+........+...+..... +
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~ 173 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRN 173 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhhccccc
Confidence 79999999999999999999988632112234444433332210 0011111111222222322111 0
Q ss_pred -------------------hcCCCCEEEEcCCCCchHHH-----HHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 70 -------------------SVSKDNIIIVDSLNSIKGYR-----YELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 70 -------------------~L~~~~~VIvD~~n~~k~~R-----~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
.+....+||+||.+.....+ ..+..+.. .-..+|||++|.+++++|..+|.
T Consensus 174 v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~---~~D~~I~Vda~~d~~~~R~i~Rd 248 (321)
T 3tqc_A 174 VRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSD---FFDFSLFVDAQAQVIQKWYIDRV 248 (321)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGG---GCSEEEEEECCHHHHHHHHHHHH
T ss_pred cccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhh---hcCeEEEEECCHHHHHHHHHHhc
Confidence 12345789999987543210 00000111 12359999999999999999986
No 106
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.47 E-value=1.3e-06 Score=72.84 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=51.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC-CccCCCccccCCCchhhHHHHHH-------------------
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE-ASFHLDRNQSYASMPAEKNLRGV------------------- 62 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~-~~~~~~~~~~y~~~~~e~~~r~~------------------- 62 (303)
+|+|+|++||||||+++.|...+.... +..+..... ..-+......|.... ...+...
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~~-~~~~~~~tr~~~~ge~~g~~~~~~~-~~~~~~~~~~~~~~e~~~~~~~~yg~ 80 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSF-GFSVSSTTRTPRAGEVNGKDYNFVS-VDEFKSMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGGE-ECCCEEECSCCCTTCCBTTTBEECC-HHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccc-eEEeeccccCCCCCccCCeeeeecC-HHHHHHHHhhcceeeEEEEeceeccC
Confidence 689999999999999999998875211 111111110 000000011111000 0001100
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHH-cCCcEEEEEEecCH-HHHHHHHHHhhh
Q 047717 63 LRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARA-AGIRYCVLYCDLEE-DHCRKWNKERHE 124 (303)
Q Consensus 63 l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~-~~~~~~vI~l~~~~-e~~~~R~~~R~~ 124 (303)
-...+...+..+..+|+|.. ..+.+. .+. .+....+||+.+|. +++.+|+.+|+.
T Consensus 81 ~~~~i~~~l~~g~~~il~~~--~~g~~~-----l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~ 137 (186)
T 3a00_A 81 TVASVKQVSKSGKTCILDID--MQGVKS-----VKAIPELNARFLFIAPPSVEDLKKRLEGRGT 137 (186)
T ss_dssp EHHHHHHHHHTTCEEEEECC--HHHHHH-----HHTCGGGCCEEEEEECSCC------------
T ss_pred cHHHHHHHHHcCCeEEEEEc--HHHHHH-----HHHhcCCCeEEEEEECcCHHHHHHHHHhcCC
Confidence 01245566778899999863 233221 233 34455678999865 899999999875
No 107
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.47 E-value=4.5e-07 Score=76.22 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=60.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccc-CCccEEEecCCccCCCccccCCCchhh---H---------------HHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESE-AKETVRIIDEASFHLDRNQSYASMPAE---K---------------NLRGVL 63 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~-~~~~v~~~~~~~~~~~~~~~y~~~~~e---~---------------~~r~~l 63 (303)
+|+|+|++||||||+++.|.+.+.... +....... ...-+-..+..|..-..+ + .+.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR-~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~ 81 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTR-TPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECS-CCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEecc-CCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeee
Confidence 589999999999999999988764311 01011000 000000001111100000 0 001122
Q ss_pred HHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHH-cCCcEEEEEEe-cCHHHHHHHHHHhhh
Q 047717 64 RSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARA-AGIRYCVLYCD-LEEDHCRKWNKERHE 124 (303)
Q Consensus 64 ~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~-~~~~~~vI~l~-~~~e~~~~R~~~R~~ 124 (303)
.+.+...+.+|..||+|.. ..|.+ ..+. .+....+||+. .+.+++.+|+.+|+.
T Consensus 82 ~~~v~~~l~~g~~vil~id--~~g~~-----~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~ 137 (186)
T 1ex7_A 82 VASVKQVSKSGKTCILDID--MQGVK-----SVKAIPELNARFLFIAPPSVEDLKKRLEGRGT 137 (186)
T ss_dssp HHHHHHHHHHTSEEEEECC--HHHHH-----HHHTCGGGCCEEEEEECSCHHHHHHHHHHHCC
T ss_pred cceeeehhhCCCEEEecCC--HHHHH-----HHHHhcccCceEEEEeCCCHHHHHHHHHhcCC
Confidence 3456677788999999973 33322 1233 23334556664 467889999999975
No 108
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.47 E-value=1.7e-06 Score=77.78 Aligned_cols=107 Identities=12% Similarity=0.144 Sum_probs=72.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhc-CCCCEEEEc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSV-SKDNIIIVD 80 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L-~~~~~VIvD 80 (303)
.+|+|-|.-||||||.++.|.+.|+.. +..|+.+...+- ...+..+.......| ..|.+||+|
T Consensus 87 vlIvfEG~DgAGKgt~Ik~L~e~Ldpr--g~~V~~~~~Pt~--------------eE~~~~yl~R~~~~LP~~G~IvIfD 150 (304)
T 3czq_A 87 VMAVFEGRDAAGKGGAIHATTANMNPR--SARVVALTKPTE--------------TERGQWYFQRYVATFPTAGEFVLFD 150 (304)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCTT--TEEEEECCSCCH--------------HHHTSCTTHHHHTTCCCTTCEEEEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhccc--CCeEEEeCCcCh--------------HHHhchHHHHHHHhcccCCeEEEEE
Confidence 489999999999999999999999876 455666553321 000001111233456 789999999
Q ss_pred CCCCchH-------------HHH---HHHH---HHHHcCCcEEEEEEecCHHHHHHHHHHhhh
Q 047717 81 SLNSIKG-------------YRY---ELWC---LARAAGIRYCVLYCDLEEDHCRKWNKERHE 124 (303)
Q Consensus 81 ~~n~~k~-------------~R~---~l~~---~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~ 124 (303)
...|..- +.. ++.. .+...|++.+.+|+++|.++..+|+.+|..
T Consensus 151 RswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~ 213 (304)
T 3czq_A 151 RSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRH 213 (304)
T ss_dssp ECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhc
Confidence 8665321 111 1111 234468999999999999999999988864
No 109
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.46 E-value=3.5e-07 Score=78.11 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=23.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
+|+|+|+|||||||+++.|++.++..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~ 30 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMI 30 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 79999999999999999999988754
No 110
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.43 E-value=6.5e-07 Score=77.65 Aligned_cols=27 Identities=37% Similarity=0.377 Sum_probs=24.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.+|+|+|.+||||||+++.|++.++..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~ 43 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFT 43 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 479999999999999999999988743
No 111
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.39 E-value=1e-06 Score=80.53 Aligned_cols=138 Identities=12% Similarity=0.106 Sum_probs=75.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCcc------C-CCccccCCCch---------hhHH---HHH-
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASF------H-LDRNQSYASMP---------AEKN---LRG- 61 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~------~-~~~~~~y~~~~---------~e~~---~r~- 61 (303)
..|+|.|+-||||||+++.|++++... + ++...+..- + -.-...|.+.. .+.. ...
T Consensus 5 ~fI~~EG~dGsGKTT~~~~La~~L~~~--g--v~~trEPg~~w~~~~g~~~Lr~~yld~~r~~~~~~~~~ea~lf~~~~q 80 (331)
T 1e2k_A 5 LRVYIDGPHGMGKTTTTQLLVALGSRD--D--IVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQ 80 (331)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC----C--C--EEEECCCHHHHHTTSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhC--C--EEEEeCCCCcccccccHHHHHHHHhChhhhccccCCHHHHHHHHHHHH
Confidence 479999999999999999999998754 2 555554320 1 00011232110 0010 000
Q ss_pred HH--------HHHHHHh----------cCCCCEEEEcCCCC-----chHHH--------HHHHHHHHHc--C-CcEEEEE
Q 047717 62 VL--------RSEVDRS----------VSKDNIIIVDSLNS-----IKGYR--------YELWCLARAA--G-IRYCVLY 107 (303)
Q Consensus 62 ~l--------~~~v~~~----------L~~~~~VIvD~~n~-----~k~~R--------~~l~~~ak~~--~-~~~~vI~ 107 (303)
.+ ...+... +..|.+||+|-..+ +.+.+ .++..+.... + .+..+++
T Consensus 81 L~fa~r~l~~a~r~~~~i~p~l~~~~~l~~g~~VI~DR~~~Ss~~~yq~~~~~~g~l~~~~~~~l~~~~~~~~ppdlt~l 160 (331)
T 1e2k_A 81 ITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVL 160 (331)
T ss_dssp HHHHHHHHHHHHHHGGGEEEECC----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHHTCCCCCTTCEEEE
T ss_pred HHHHhhhHHHHHHHHHHHhHHhhccccccCCCEEEEecCchHhHHHHHHHHHhcCCCCHHHHHHHHHhcccCCCCeEEEE
Confidence 00 1112222 24688999996432 22222 1222222222 1 2467777
Q ss_pred EecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717 108 CDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK 144 (303)
Q Consensus 108 l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~ 144 (303)
++.|++++.+|+.+|++.. +.++.+.++++.+.|+.
T Consensus 161 ldl~pe~~l~RI~~Rgr~~-Eri~~~yl~rvr~~Y~~ 196 (331)
T 1e2k_A 161 GALPEDRHIDRLAKRQRPG-ERLDLAMLAAIRRVYGL 196 (331)
T ss_dssp EECCHHHHHHHHHHSCCTT-CCCCHHHHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHhcCCCc-ccCCHHHHHHHHHHHHH
Confidence 8889999999999886532 45777888877777764
No 112
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.39 E-value=3e-07 Score=80.29 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=24.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.+|+|+|+|||||||+++.|++.++..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 489999999999999999999998753
No 113
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.36 E-value=1.1e-06 Score=78.98 Aligned_cols=27 Identities=15% Similarity=0.394 Sum_probs=21.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
++|.|+|++||||||+|+.|++.++..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~ 32 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRRE 32 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 489999999999999999999988743
No 114
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.35 E-value=1.9e-06 Score=79.79 Aligned_cols=138 Identities=13% Similarity=0.119 Sum_probs=75.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc------cC-CCccccCCCc---------hhhHH----HHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS------FH-LDRNQSYASM---------PAEKN----LRG 61 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~------~~-~~~~~~y~~~---------~~e~~----~r~ 61 (303)
.+|+|.|+-||||||+++.|+++|... + ++...+.. .+ -.-...|.+. ..|.. .+.
T Consensus 50 ~fIt~EG~dGsGKTT~~~~Lae~L~~~--g--vv~trEPg~~w~~~~gn~~Lr~~yld~~r~~~~~~~~~ea~l~~a~~Q 125 (376)
T 1of1_A 50 LRVYIDGPHGMGKTTTTQLLVALGSRD--D--IVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQ 125 (376)
T ss_dssp EEEEECSSTTSSHHHHHHHHHC----C--C--EEEECCCHHHHHTTSSSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhC--C--EEEEeCCCCccccccchHHHHHHHhChhhhccccCCHHHHHHHHHHHH
Confidence 369999999999999999999998754 2 55555432 11 0001123211 00110 010
Q ss_pred HH--------HHHHHHh----------cCCCCEEEEcCCCC-----chHHHH--------HHHHHHHHc--C-CcEEEEE
Q 047717 62 VL--------RSEVDRS----------VSKDNIIIVDSLNS-----IKGYRY--------ELWCLARAA--G-IRYCVLY 107 (303)
Q Consensus 62 ~l--------~~~v~~~----------L~~~~~VIvD~~n~-----~k~~R~--------~l~~~ak~~--~-~~~~vI~ 107 (303)
.+ ...+.+. +..|.+||+|-..+ +.+.+| ++..+.... . .+..+++
T Consensus 126 L~fa~r~~~~a~r~~~~i~paL~~~~al~~g~iVI~DR~~~Ss~~ayq~~~y~~g~l~~~~i~~l~~~~~~~~ppdlt~L 205 (376)
T 1of1_A 126 ITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVL 205 (376)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEC-----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHHTCCCCCTTCEEEE
T ss_pred HHHhccchHHHHHHHHHhhhhhcccccccCCCeEEEeeChhHHHHHHHHHHHhcCCCCHHHHHHHHHhcccCCCCeEEEE
Confidence 11 1112111 35688999996432 222221 222232222 1 2466777
Q ss_pred EecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717 108 CDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK 144 (303)
Q Consensus 108 l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~ 144 (303)
+++|++++.+|+.+|++.. +.++.+.++++.+.|+.
T Consensus 206 ldl~pe~~l~RI~~RgR~~-Eri~leyl~rVr~~Y~~ 241 (376)
T 1of1_A 206 GALPEDRHIDRLAKRQRPG-ERLDLAMLAAIRRVYGL 241 (376)
T ss_dssp EECCHHHHHHHHHHSCCTT-CCCCHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhcCCCc-ccCCHHHHHHHHHHHHH
Confidence 8999999999999886532 45777888888777764
No 115
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.29 E-value=2.5e-06 Score=78.17 Aligned_cols=139 Identities=16% Similarity=0.108 Sum_probs=76.1
Q ss_pred EEEEEEccCCCCHHHHH-HHHHHHHccccCCccEEEecCCcc---CCCc----cccCCCc-------hh-h--HHH-HHH
Q 047717 2 ALIVICGQPSSGKSLAA-TCLAEALKESEAKETVRIIDEASF---HLDR----NQSYASM-------PA-E--KNL-RGV 62 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA-~~La~~l~~~~~~~~v~~~~~~~~---~~~~----~~~y~~~-------~~-e--~~~-r~~ 62 (303)
..|+|.|.-||||||++ +.|+++++..+ .++...+..- .... ...|.+. .. + ..+ ...
T Consensus 13 ~~I~iEG~~GaGKTT~~~~~L~~~l~~~g---~vv~trEPgg~w~t~~g~e~lr~i~l~~~~~~~~~~s~~~a~~~~~e~ 89 (341)
T 1osn_A 13 LRIYLDGAYGIGKTTAAEEFLHHFAITPN---RILLIGEPLSYWRNLAGEDAICGIYGTQTRRLNGDVSPEDAQRLTAHF 89 (341)
T ss_dssp EEEEEEESSSSCTTHHHHHHHHTTTTSGG---GEEEECCCHHHHTTBTTBCHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHhhCC---cEEEEeCCCccccCcccHHHHHHHHhchhhhcccccchhhhhHHHHHH
Confidence 47999999999999999 99999987642 2555555421 0000 0112110 00 0 000 000
Q ss_pred ----------HHHHHHH------------hcCCCCEEEEcCCCC-----chHHH--------HHHHHHHHHc---CCcEE
Q 047717 63 ----------LRSEVDR------------SVSKDNIIIVDSLNS-----IKGYR--------YELWCLARAA---GIRYC 104 (303)
Q Consensus 63 ----------l~~~v~~------------~L~~~~~VIvD~~n~-----~k~~R--------~~l~~~ak~~---~~~~~ 104 (303)
+...+.. .+..|.+||+|-..+ ..+-| .++..+.... -.+..
T Consensus 90 ql~fa~p~~~la~R~~~h~~~~i~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~r~~~g~l~~~~~~~L~~~~~~~~~PDl 169 (341)
T 1osn_A 90 QSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIASTICFPLSRYLVGDMSPAALPGLLFTLPAEPPGTN 169 (341)
T ss_dssp HHHTHHHHHHHHHHHHHTSCCCCSCCSCCCSSCCEEEEEESCTHHHHTHHHHHHHHHTSSCGGGHHHHHTTCCCCCSCCE
T ss_pred HHHHHhHHHHHHHHHHHHHhhhhccccccccCCCCeEEEeCCccHHHHHHHhhhhhcCCCCHHHHHHHHHhhhcCCCCCe
Confidence 1122222 235678899996432 11111 1222222222 13678
Q ss_pred EEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHhcC
Q 047717 105 VLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEK 144 (303)
Q Consensus 105 vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~E~ 144 (303)
+||+++|++++.+|+.+|++.. ++++.+.++++.+.|+.
T Consensus 170 tI~Ld~~pe~~l~RI~~RgR~~-Erie~~yl~rvr~~Y~~ 208 (341)
T 1osn_A 170 LVVCTVSLPSHLSRVSKRARPG-ETVNLPFVMVLRNVYIM 208 (341)
T ss_dssp EEEEECCHHHHHHHCC-------CCCCHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHhhCCCc-ccCCHHHHHHHHHHHHH
Confidence 9999999999999998886532 45777888777777664
No 116
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.24 E-value=1.9e-05 Score=67.89 Aligned_cols=114 Identities=10% Similarity=0.060 Sum_probs=60.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc-ccCCccEEEecCC-ccCCCccccCCCchhhH--HHH----------------HH
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE-SEAKETVRIIDEA-SFHLDRNQSYASMPAEK--NLR----------------GV 62 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~-~~~~~~v~~~~~~-~~~~~~~~~y~~~~~e~--~~r----------------~~ 62 (303)
+++|+|++||||||+.+.|...+.. .. ...+.+.... .........|.....+. ... +.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~p~~~-~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~yg~ 96 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQPLYDT-QVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGT 96 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCTTTE-EECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCce-EEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccCCC
Confidence 8999999999999999999987652 00 0011111100 00000011111100000 000 00
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhh
Q 047717 63 LRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERH 123 (303)
Q Consensus 63 l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~ 123 (303)
-...+...+..|.++|+| .-...+.+++.... ....++.+.-+.+.+.+|+..|+
T Consensus 97 ~~~~v~~~l~~G~illLD---LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~Rl~~rG 151 (219)
T 1s96_A 97 SREAIEQVLATGVDVFLD---IDWQGAQQIRQKMP---HARSIFILPPSKIELDRRLRGRG 151 (219)
T ss_dssp EHHHHHHHHTTTCEEEEE---CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHHHHHTTS
T ss_pred CHHHHHHHHhcCCeEEEE---ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHHHHHHcC
Confidence 012466678889999999 33444555554332 23445555567888999987775
No 117
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.22 E-value=3.5e-06 Score=71.43 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=61.6
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC-------ccCCCc-----cccCCCchhhHHHHHHH---HH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA-------SFHLDR-----NQSYASMPAEKNLRGVL---RS 65 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~-------~~~~~~-----~~~y~~~~~e~~~r~~l---~~ 65 (303)
|.+|+|+|.|||||+|+|+.|.+.++.. +..++.+++. ..+... ...|..... +.+..+. ..
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~g~~--~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R-~~m~~~g~~~R~ 87 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRLGAD--VCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFR-KDMIRWGEEKRQ 87 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHCTT--TEEEECTHHHHHHHHHHTTTCCCC-------CCSSHH-HHHHHHHHHHHH
T ss_pred CEEEEEECCCCCChHHHHHHHHHHcCCC--CceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHH-HHHHHHHHHHHh
Confidence 3699999999999999999999877532 2334444431 111110 112332211 1111011 00
Q ss_pred H-----HHHhcC--CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHH
Q 047717 66 E-----VDRSVS--KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNK 120 (303)
Q Consensus 66 ~-----v~~~L~--~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~ 120 (303)
. +..++. ...+||||+.-.... +.-+-+..+..+.+|.+.+++++..+|.-
T Consensus 88 ~d~~~~~~~~~~~~~~~~vII~dvR~~~E----v~~fr~~~g~~~~iirI~as~~~R~~Rg~ 145 (202)
T 3ch4_B 88 ADPGFFCRKIVEGISQPIWLVSDTRRVSD----IQWFREAYGAVTQTVRVVALEQSRQQRGW 145 (202)
T ss_dssp HCTTTTHHHHSBTCCCSEEEECCCCSHHH----HHHHHHHHGGGEEEEEEEECHHHHHHTTC
T ss_pred cCchHHHHHHHHhcCCCcEEEeCCCCHHH----HHHHHHhCCCcEEEEEEECCHHHHHHHhh
Confidence 0 111111 235899999754332 22222334556889999999999999843
No 118
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.18 E-value=9.8e-06 Score=68.70 Aligned_cols=26 Identities=42% Similarity=0.608 Sum_probs=23.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.+|.|.|++||||||+++.|+..+..
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 37899999999999999999998864
No 119
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.16 E-value=1.4e-05 Score=72.20 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=24.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
++|+|+|++||||||+|..|++.++.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCcc
Confidence 58999999999999999999999864
No 120
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.08 E-value=4.9e-05 Score=69.52 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+|+|+|++||||||+|+.|++.++.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~ 33 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNG 33 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTE
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCC
Confidence 8999999999999999999999863
No 121
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.08 E-value=5.2e-05 Score=68.41 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=23.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
++|+|+|++||||||+|..|++.++.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~ 36 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPV 36 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCC
Confidence 48999999999999999999999864
No 122
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.08 E-value=6.9e-06 Score=74.23 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=23.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
-+|.|+|++||||||+++.|+..+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999876
No 123
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.05 E-value=2.9e-05 Score=71.37 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=23.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+.|+|.|+|||||||+++.|+..++.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 56899999999999999999988764
No 124
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.05 E-value=9e-06 Score=68.76 Aligned_cols=25 Identities=40% Similarity=0.477 Sum_probs=23.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
.+|.|+|++||||||+++.|+..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999999876
No 125
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.01 E-value=3.8e-05 Score=66.77 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=24.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.+|.|+|++||||||+++.|+..++..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 479999999999999999999988653
No 126
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.98 E-value=2e-05 Score=75.78 Aligned_cols=164 Identities=13% Similarity=0.010 Sum_probs=89.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS 81 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~ 81 (303)
.+|+|-|..||||+|..+.|.+.++.. +..|+.+...+..- ....| +..-..+.-..|.+||+|.
T Consensus 44 vlIvfEG~D~AGKg~~Ik~l~~~l~pr--g~~V~a~~~Pt~~E-~~~~y------------l~R~~~~lP~~G~IvIfdR 108 (500)
T 3czp_A 44 VIILINGIEGAGKGETVKLLNEWMDPR--LIEVQSFLRPSDEE-LERPP------------QWRFWRRLPPKGRTGIFFG 108 (500)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSCGG--GEEEEECSSCCHHH-HTSCT------------THHHHHHCCCTTCEEEEES
T ss_pred EEEEEeCcCCCCHHHHHHHHHHhcCcc--CCeEEEeCCCChhh-ccCCh------------hhhHHHhCCCCCeEEEEeC
Confidence 489999999999999999999999876 34566554321100 01112 1112223335899999998
Q ss_pred CCCchH----------------HHHHHHH---HHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCC-------CC-CHHH
Q 047717 82 LNSIKG----------------YRYELWC---LARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEA-------AY-DDKI 134 (303)
Q Consensus 82 ~n~~k~----------------~R~~l~~---~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~-------~~-~~e~ 134 (303)
..|..- +-.++.. .....|++.+.+|+++|.++..+|+.+|..+... .+ ..+.
T Consensus 109 SwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~Wk~s~~D~~~~~~ 188 (500)
T 3czp_A 109 NWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQHSWKLSPLDWKQSEV 188 (500)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------------CSSCTTSHHH
T ss_pred chhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCCCHHHHHHHHh
Confidence 754321 1112211 2456789999999999999999999998753211 11 1233
Q ss_pred HHHHHHHhcCCCC-CCCCCCceeeeCCCCcccccchHHHHHHHHHHHh
Q 047717 135 FEDLVRRFEKPDR-RNRWDSPLFELCPYKDAIENSSAAILDAVAYLTK 181 (303)
Q Consensus 135 ~~~l~~r~E~P~~-~~rwd~pl~~i~~~~~~~~~~~~~~~ei~~~l~~ 181 (303)
+++....|+.-.. .+.-.+|.++|+.++ .--.....++.|++.|..
T Consensus 189 ~~~Y~~a~e~~l~~T~t~~APW~vI~a~d-k~~arl~v~~~il~~l~~ 235 (500)
T 3czp_A 189 YDRFVHYGERVLRRTSRDYAPWYVVEGAD-ERYRALTVGRILLEGLQA 235 (500)
T ss_dssp HHHHHHHHHHHHHHHCBTTBCEEEEECSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEECCC-cchhHHHHHHHHHHHHHH
Confidence 4433332222111 112335888888753 211113344555555543
No 127
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.97 E-value=1.1e-05 Score=66.96 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
+|+|+|++||||||+++.|...+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 799999999999999999998764
No 128
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.92 E-value=3.4e-05 Score=66.32 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=15.7
Q ss_pred EEEEEEccCCCCHHHHHHHHH-HHH
Q 047717 2 ALIVICGQPSSGKSLAATCLA-EAL 25 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La-~~l 25 (303)
.+|.|+|++||||||+++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 379999999999999999999 765
No 129
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.91 E-value=3e-05 Score=74.75 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=24.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
..|+|+|++||||||+|+.|++.|+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999985
No 130
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.88 E-value=3.3e-05 Score=69.98 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=23.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+|.|.|++||||||+++.|+..+..
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHHhhccc
Confidence 7899999999999999999998864
No 131
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=97.88 E-value=0.00018 Score=63.92 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=86.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL 82 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~ 82 (303)
||+|.|..||||++..+.|.+.++.. +..|+.+....- .|+ .+..+-.-..+.=..|.++|+|..
T Consensus 77 lIvfEG~DaAGKgg~Ik~l~~~ldPR--g~~V~a~~~Pt~------------eE~-~~~ylwR~~~~lP~~G~I~IFdRS 141 (289)
T 3rhf_A 77 LLILQAMDTAGKGGIVSHVVGAMDPQ--GVQLTAFKAPTD------------EEK-SHDFLWRIEKQVPAAGMVGVFDRS 141 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCGG--GEEEEECCSCCH------------HHH-TSCTTHHHHTTCCCTTCEEEEESC
T ss_pred EEEEECCCCCChHHHHHHHHHhcCcC--ceEEEECCCCCh------------hhh-cCCHHHHHHHhCCCCCeEEEEeCc
Confidence 79999999999999999999999876 345555432110 011 000111122233368999999998
Q ss_pred CCchHH---------------HH----HHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCC--CCH---------
Q 047717 83 NSIKGY---------------RY----ELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAA--YDD--------- 132 (303)
Q Consensus 83 n~~k~~---------------R~----~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~--~~~--------- 132 (303)
.|..-. ++ .+.......|+..+.+|+++|.++..+|+.+|..+.... +++
T Consensus 142 wY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~WK~s~~D~~~r~~w 221 (289)
T 3rhf_A 142 QYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKHWKYSRGDLAERAYW 221 (289)
T ss_dssp GGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGGGGCCHHHHHHHTTH
T ss_pred hhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHHHHHHHHHH
Confidence 764321 11 122223356888899999999999999999987643221 122
Q ss_pred ----HHHHHHHHHhcCCCCCCCCCCceeeeCCC
Q 047717 133 ----KIFEDLVRRFEKPDRRNRWDSPLFELCPY 161 (303)
Q Consensus 133 ----e~~~~l~~r~E~P~~~~rwd~pl~~i~~~ 161 (303)
+..++|..+-..+ .+|.++|..+
T Consensus 222 d~Y~~a~e~ml~~T~t~------~APW~VV~ad 248 (289)
T 3rhf_A 222 DDYMDAYSVAFEKTSTE------IAPWHVVPAN 248 (289)
T ss_dssp HHHHHHHHHHHHHHCCS------SSCEEEEECS
T ss_pred HHHHHHHHHHHHHhCCC------CCCeEEEeCC
Confidence 3344444443332 3588888875
No 132
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.86 E-value=4.2e-05 Score=73.52 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=73.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDS 81 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~ 81 (303)
.+|+|-|.-||||+|..+.|.+.++.. +..|+.+...+..- ....|- ..-..+.=..|.++|+|.
T Consensus 301 vlIvfEG~DaAGKg~~Ik~l~~~ldpr--g~~V~~~~~Pt~~E-~~~~yl------------~R~~~~lP~~G~i~IfDR 365 (500)
T 3czp_A 301 LVAVFEGNDAAGKGGAIRRVTDALDPR--QYHIVPIAAPTEEE-RAQPYL------------WRFWRHIPARRQFTIFDR 365 (500)
T ss_dssp EEEEEEESTTSCHHHHHHHHHTTSCGG--GCEEEECCSCCHHH-HTSCTT------------HHHHTTCCCTTCEEEEES
T ss_pred EEEEEeccCCCCHHHHHHHHHHhcCcc--CCeEEEeCCCChhh-hcchHH------------HHHHHhCCCCCeEEEEeC
Confidence 379999999999999999999999876 35566654321100 011121 112222335899999998
Q ss_pred CCCchH-------------H--H-HHHHH---HHHHcCCcEEEEEEecCHHHHHHHHHHhhhc
Q 047717 82 LNSIKG-------------Y--R-YELWC---LARAAGIRYCVLYCDLEEDHCRKWNKERHEK 125 (303)
Q Consensus 82 ~n~~k~-------------~--R-~~l~~---~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~ 125 (303)
..|..- + + .++.. .....|++.+.+|+++|.++..+|+.+|..+
T Consensus 366 swY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~ 428 (500)
T 3czp_A 366 SWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKT 428 (500)
T ss_dssp CGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcC
Confidence 776432 1 1 11111 1346689999999999999999999999764
No 133
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.81 E-value=9.7e-05 Score=62.42 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
+|+|+|++||||||+++.|.+.+.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 799999999999999999998765
No 134
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.72 E-value=0.00011 Score=68.67 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=24.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
++|+|+|++||||||+|..|++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCC
Confidence 68999999999999999999999975
No 135
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.66 E-value=0.00016 Score=61.57 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
..++|+|+||+||||+|+.+++.+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 358999999999999999999988754
No 136
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.65 E-value=0.00035 Score=66.07 Aligned_cols=104 Identities=20% Similarity=0.229 Sum_probs=58.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCC------------ccccCCC---chhhHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLD------------RNQSYAS---MPAEKNLRGVLRSE 66 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~------------~~~~y~~---~~~e~~~r~~l~~~ 66 (303)
.+|+++|+|||||||++..|+.++... +..|.+++-+.+... .-..|.. ..... .+...
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~--G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~----i~~~a 174 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKR--GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIK----LAKEG 174 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHH----HHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHH----HHHHH
Confidence 489999999999999999999999765 566776664432110 0001211 11111 22223
Q ss_pred HHHhcC-CCCEEEEcCCCCc---hHHHHHHHHHHHHcCCcEEEEEEecC
Q 047717 67 VDRSVS-KDNIIIVDSLNSI---KGYRYELWCLARAAGIRYCVLYCDLE 111 (303)
Q Consensus 67 v~~~L~-~~~~VIvD~~n~~---k~~R~~l~~~ak~~~~~~~vI~l~~~ 111 (303)
+..+.. .-++||+|..... .....++..+.+.......++.+++.
T Consensus 175 l~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~ 223 (443)
T 3dm5_A 175 VDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGT 223 (443)
T ss_dssp HHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred HHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCC
Confidence 333322 3579999976532 23445555544444444445556654
No 137
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00026 Score=66.10 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=23.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|+|.|+||+|||++|+++|..++..
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred eEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 7899999999999999999998754
No 138
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.62 E-value=4.6e-05 Score=62.83 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=26.3
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHcccc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESE 29 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~ 29 (303)
|++|.|+|++||||||++..|...|...+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 78999999999999999999999987653
No 139
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.59 E-value=0.00048 Score=57.38 Aligned_cols=96 Identities=14% Similarity=0.179 Sum_probs=51.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHH-hc--CCCCEEEE
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDR-SV--SKDNIIIV 79 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~-~L--~~~~~VIv 79 (303)
.++|+|+||+||||+++.+++.+.........+.++... ......++..+...... .+ ....++|+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~vlii 108 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD-----------ERGIDVVRHKIKEFARTAPIGGAPFKIIFL 108 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC-----------TTCHHHHHHHHHHHHTSCCSTTCSCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc-----------ccChHHHHHHHHHHhcccCCCccCceEEEE
Confidence 489999999999999999999875432222333333110 00112222222222211 11 34568999
Q ss_pred cCCCCch-HHHHHHHHHHHHcCCcEEEEEEe
Q 047717 80 DSLNSIK-GYRYELWCLARAAGIRYCVLYCD 109 (303)
Q Consensus 80 D~~n~~k-~~R~~l~~~ak~~~~~~~vI~l~ 109 (303)
|...... .....+..+.........+|...
T Consensus 109 De~~~l~~~~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 109 DEADALTADAQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp ETGGGSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred eChhhcCHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 9876543 33444555544444444455443
No 140
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.57 E-value=0.00091 Score=59.51 Aligned_cols=97 Identities=15% Similarity=0.217 Sum_probs=53.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccC--CccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEA--KETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVD 80 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~--~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD 80 (303)
-|+|+|+||+|||++|+.+++.+..... ...++.++...+. . .|... .+...+..+. .. .+.++++|
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~---~-~~~g~-~~~~~~~~~~----~~--~~~vl~iD 137 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV---G-QYIGH-TAPKTKEVLK----RA--MGGVLFID 137 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC---C-SSTTC-HHHHHHHHHH----HH--TTSEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh---h-hcccc-cHHHHHHHHH----hc--CCCEEEEE
Confidence 4899999999999999999999865422 2244554422221 1 12111 1222232222 22 46789999
Q ss_pred CCCCc----------hHHHHHHHHHHHHcCCcEEEEEEec
Q 047717 81 SLNSI----------KGYRYELWCLARAAGIRYCVLYCDL 110 (303)
Q Consensus 81 ~~n~~----------k~~R~~l~~~ak~~~~~~~vI~l~~ 110 (303)
..... ......+............+|....
T Consensus 138 Eid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~ 177 (309)
T 3syl_A 138 EAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGY 177 (309)
T ss_dssp TGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEEC
T ss_pred ChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 76533 2333455555454444455554443
No 141
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.54 E-value=0.00042 Score=65.44 Aligned_cols=107 Identities=22% Similarity=0.195 Sum_probs=59.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCC------------CccccCCCchhhHHHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHL------------DRNQSYASMPAEKNLRGVLRSEVDR 69 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~------------~~~~~y~~~~~e~~~r~~l~~~v~~ 69 (303)
.+|+++|++||||||++..|+..+... +..|.+++-+.+.. ..-..|........ .......+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~--G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp-~~i~~~al~~ 174 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKR--GYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNP-IEIAKKGVDI 174 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCH-HHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCH-HHHHHHHHHH
Confidence 479999999999999999999998765 45666655332110 00001111100001 1122223433
Q ss_pred hc-CCCCEEEEcCCCC-----chHHHHHHHHHHHHcCCcEEEEEEecC
Q 047717 70 SV-SKDNIIIVDSLNS-----IKGYRYELWCLARAAGIRYCVLYCDLE 111 (303)
Q Consensus 70 ~L-~~~~~VIvD~~n~-----~k~~R~~l~~~ak~~~~~~~vI~l~~~ 111 (303)
+. ..-++||+|.... ......++..+.+.......++.+++.
T Consensus 175 a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~ 222 (433)
T 3kl4_A 175 FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDAS 222 (433)
T ss_dssp TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCc
Confidence 33 2458999997653 234566676665555544455556664
No 142
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.53 E-value=0.00043 Score=66.62 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=30.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
..|+|+|.|||||||++..|+.++... +..+.+++.+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~--G~kVllVd~D 138 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRK--GWKTCLICAD 138 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEecc
Confidence 478999999999999999999988764 4566666643
No 143
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.46 E-value=0.00083 Score=53.85 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=26.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
.++|.|++||||||+++.++..+... +..++.++
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~--g~~~~~~~ 71 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEA--GKNAAYID 71 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTT--TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEc
Confidence 57899999999999999999987543 33455554
No 144
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.45 E-value=0.00012 Score=60.58 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=25.2
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|++|+|+|++||||||+++.|...+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 6799999999999999999999887654
No 145
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00056 Score=64.86 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=23.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|+|.|+||+|||++|++||..++..
T Consensus 246 ILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 246 ILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp EEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred eEeeCCCCCcHHHHHHHHHhccCCC
Confidence 7999999999999999999998754
No 146
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00079 Score=63.46 Aligned_cols=25 Identities=24% Similarity=0.612 Sum_probs=23.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|+|.|+||+|||++|+++|..++..
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 8999999999999999999998754
No 147
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.38 E-value=0.0014 Score=59.10 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
-|+|.|+||+|||++|+.++..++..
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~~~~ 78 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEANST 78 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHTCE
T ss_pred eEEEECCCCCcHHHHHHHHHHHHCCC
Confidence 48999999999999999999987643
No 148
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00035 Score=66.07 Aligned_cols=25 Identities=28% Similarity=0.635 Sum_probs=23.2
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|+|.|+||+|||++|++||..++..
T Consensus 218 vLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCC
Confidence 8999999999999999999998764
No 149
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.31 E-value=0.0018 Score=59.61 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=28.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.++.|.|+|||||||++.+++..+... +..+++++.+
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E 98 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAE 98 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecc
Confidence 378999999999999999999877543 3456666643
No 150
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.29 E-value=0.00082 Score=59.98 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=23.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+-++|.|+||+||||+|+.+++.+..
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 45899999999999999999998754
No 151
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.28 E-value=0.0016 Score=54.75 Aligned_cols=32 Identities=31% Similarity=0.326 Sum_probs=25.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
+++|.|+|||||||++..|+. . . +..+++++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~-~--~--~~~v~~i~~ 53 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL-L--S--GKKVAYVDT 53 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-H--H--CSEEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHH-H--c--CCcEEEEEC
Confidence 789999999999999999987 1 1 345666653
No 152
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.27 E-value=0.0024 Score=57.74 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
-|+|.|+||+|||++|+.++..+
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHT
T ss_pred eEEEECCCCccHHHHHHHHHHHc
Confidence 48899999999999999999988
No 153
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.27 E-value=0.0035 Score=57.43 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=22.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|+|.|+||+|||++|+.++..++.
T Consensus 87 iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 87 ILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 789999999999999999998864
No 154
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.25 E-value=0.00017 Score=62.86 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=24.9
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|.+|.|+|.+||||||+|+.|++.++.
T Consensus 1 m~~i~ltG~~~sGK~tv~~~l~~~~g~ 27 (241)
T 1dek_A 1 MKLIFLSGVKRSGKDTTADFIMSNYSA 27 (241)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 889999999999999999999988664
No 155
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.23 E-value=0.0041 Score=55.65 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=29.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEAS 41 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~ 41 (303)
+|+|+|++||||||++..|+..+... -+..|.+++.+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~-~G~~V~lv~~D~ 144 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLE-KHKKIAFITTDT 144 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-TCCCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCc
Confidence 78999999999999999999988641 145677766543
No 156
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00058 Score=64.22 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=23.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|+|.|+||+|||++|+++|..++..
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e~~~~ 243 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQTSAT 243 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHHHTCE
T ss_pred CceECCCCchHHHHHHHHHHHhCCC
Confidence 8999999999999999999998754
No 157
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.21 E-value=0.0031 Score=56.48 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=30.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.+|+++|.+|+||||++..|+..+... +..+.+++.+
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D 135 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGAD 135 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecC
Confidence 378899999999999999999988654 4567776644
No 158
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.00045 Score=65.25 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
=|+|.|+||+|||++|+++|..++..
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred eeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 38999999999999999999998754
No 159
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.21 E-value=0.0028 Score=56.94 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=26.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
-++|.|+||+||||+|+.++..+... +..++.++
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~ 72 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSS 72 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEE
Confidence 47899999999999999999988543 23444443
No 160
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.21 E-value=0.0012 Score=52.28 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=22.0
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
|+-|++.|.+|+||||+.+.|...
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999998754
No 161
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.16 E-value=0.0036 Score=56.99 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|+|+||+||||+++.+++.+..
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988743
No 162
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.16 E-value=0.00086 Score=59.74 Aligned_cols=110 Identities=16% Similarity=0.215 Sum_probs=55.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHH--Hhc-C-CCCEE
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVD--RSV-S-KDNII 77 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~--~~L-~-~~~~V 77 (303)
|.++|.|+||+||||+|+.+++.+........++.++... ......++..+..... ..+ . +..+|
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-----------~~~~~~i~~~~~~~~~~~~~~~~~~~~vi 111 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD-----------DRGIDVVRNQIKHFAQKKLHLPPGKHKIV 111 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS-----------CCSHHHHHTHHHHHHHBCCCCCTTCCEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc-----------ccChHHHHHHHHHHHhccccCCCCCceEE
Confidence 3489999999999999999999875422122333333111 0011233322322221 122 2 25688
Q ss_pred EEcCCCCc-hHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHh
Q 047717 78 IVDSLNSI-KGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKER 122 (303)
Q Consensus 78 IvD~~n~~-k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R 122 (303)
|+|..... ......+............+|.+..+.+.....+..|
T Consensus 112 iiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 112 ILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp EEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred EEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 99976443 2233334444444444455555544444333334434
No 163
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.14 E-value=0.00078 Score=63.76 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=27.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
-++|.|+||+||||+|+.++..+.....+..++.++
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 478999999999999999999885442234455444
No 164
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.10 E-value=0.00053 Score=69.53 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=23.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
=|+|.|+||+|||++|+.++..++..
T Consensus 240 GILL~GPPGTGKT~LAraiA~elg~~ 265 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 38999999999999999999887653
No 165
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.08 E-value=0.0033 Score=57.63 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=27.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
++.|.|.|||||||+|.+++...... +..+.+++-
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~ 97 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDA 97 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEC
Confidence 78999999999999999998766443 345666653
No 166
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.08 E-value=0.0014 Score=58.78 Aligned_cols=94 Identities=15% Similarity=0.253 Sum_probs=51.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHH--hcCCCCEEEEc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDR--SVSKDNIIIVD 80 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~--~L~~~~~VIvD 80 (303)
++++.|+||+||||+|+.+++.++. +++.++... +. ...++..+...... ......++|+|
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~--------~~----~~~i~~~~~~~~~~~~~~~~~~vliiD 112 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSD--------CK----IDFVRGPLTNFASAASFDGRQKVIVID 112 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTT--------CC----HHHHHTHHHHHHHBCCCSSCEEEEEEE
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEcccc--------cC----HHHHHHHHHHHHhhcccCCCCeEEEEE
Confidence 6788999999999999999998753 344444211 11 22333333322211 11245788899
Q ss_pred CCCCch--HHHHHHHHHHHHcCCcEEEEEEecCHH
Q 047717 81 SLNSIK--GYRYELWCLARAAGIRYCVLYCDLEED 113 (303)
Q Consensus 81 ~~n~~k--~~R~~l~~~ak~~~~~~~vI~l~~~~e 113 (303)
...... .....+............+|....+..
T Consensus 113 Ei~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 113 EFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp SCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 876653 344444444444333344554444433
No 167
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.07 E-value=0.0067 Score=56.10 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-|+|.|+||+|||++|+.++..++.
T Consensus 150 ~vLL~GppGtGKT~la~aia~~~~~ 174 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAKAVAAESNA 174 (389)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcC
Confidence 5899999999999999999998764
No 168
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.07 E-value=0.00021 Score=58.90 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=28.2
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
|++|.|+|.+||||||+++.|...+...+.....+.++
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 57999999999999999999999887542223344444
No 169
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.06 E-value=0.00031 Score=57.70 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=22.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
.++|.|+|||||||+++.++..+.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998875
No 170
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.04 E-value=0.0014 Score=61.89 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=29.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
+|+|+|.|||||||++..|+..+... +..+.+++.+
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~--G~kVllv~~D 136 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKR--GLKPALIAAD 136 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHH--HCCEEEECCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEecc
Confidence 68999999999999999999988654 4567776654
No 171
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.03 E-value=0.002 Score=58.43 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-++|.|+||+||||+++.++..+..
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3789999999999999999998754
No 172
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.03 E-value=0.0016 Score=57.13 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-++|+|+||+|||++|+.+++.++.
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~~ 90 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESNF 90 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 5899999999999999999998754
No 173
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.01 E-value=0.00042 Score=62.03 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=24.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.+|.|+|.+||||||+++.|+..+..
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 47999999999999999999999875
No 174
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.99 E-value=0.00042 Score=56.35 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|+|+||+||||+++.+++.+..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999998854
No 175
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.94 E-value=0.00052 Score=56.82 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=22.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
.+.|.|++||||||+.+.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998886
No 176
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.93 E-value=0.00073 Score=56.37 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=23.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.-++|+|+||+||||+|+.|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 358899999999999999999988643
No 177
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0099 Score=53.74 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=23.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+.++|+|+||+|||++++.+++.+..
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999864
No 178
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.91 E-value=0.018 Score=54.35 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=30.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.+|+++|.+||||||++..|+..+... .+..|.+++-+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~-~G~kVllvd~D 138 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREK-HKKKVLVVSAD 138 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT-SCCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEEecC
Confidence 478899999999999999999999764 14667777654
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.91 E-value=0.0042 Score=56.22 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
|-++|+|+||+||||+++.|+..+.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3489999999999999999999663
No 180
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.90 E-value=0.0005 Score=58.08 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=20.8
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
|++++++|.||||||++|..+...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 679999999999999999886544
No 181
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.89 E-value=0.005 Score=55.95 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=27.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+|.|.|++||||||+++.|+..+... +..+.+.+
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g 164 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLKNH--GFSVVIAA 164 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEe
Confidence 79999999999999999999888654 34555544
No 182
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.87 E-value=0.0006 Score=60.90 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|.|+||+|||++|+.|++.++.
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5788999999999999999999864
No 183
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.86 E-value=0.0068 Score=55.91 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=28.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
+++|.|.|||||||+|.+++...... +..+.+++-+
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E 111 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAE 111 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECC
Confidence 78999999999999999998876443 3456666643
No 184
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.86 E-value=0.0046 Score=56.04 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
.+++|.|+||+||||+|.+++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 36799999999999999999876
No 185
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.84 E-value=0.00062 Score=59.16 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-|+|.|+||+||||+|+.|+..++.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~ 71 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKV 71 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCC
Confidence 3789999999999999999998753
No 186
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.84 E-value=0.00058 Score=57.31 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=22.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
+++|+|++||||||+.+.|...+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 789999999999999999988764
No 187
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.83 E-value=0.00048 Score=55.93 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|+|+||+||||+|+.+++.+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 5799999999999999999998854
No 188
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.83 E-value=0.008 Score=55.23 Aligned_cols=133 Identities=13% Similarity=0.075 Sum_probs=62.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC-ccCCC--cc-ccCCC-ch-hhHH-HHHHHHHHHHHhcCCC-
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA-SFHLD--RN-QSYAS-MP-AEKN-LRGVLRSEVDRSVSKD- 74 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~-~~~~~--~~-~~y~~-~~-~e~~-~r~~l~~~v~~~L~~~- 74 (303)
+|+|+|+.||||||+.+.|...+.. ....+.+++. .+... ++ ..|.. .. .... ....+...+...+...
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~---~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~p 253 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPF---DQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKP 253 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCT---TSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC---CceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCC
Confidence 6899999999999999999887653 2234444432 11110 11 11111 00 0000 0112233444555533
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcC--CCCCCHHHHHHHHH
Q 047717 75 NIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKG--EAAYDDKIFEDLVR 140 (303)
Q Consensus 75 ~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~--~~~~~~e~~~~l~~ 140 (303)
..+|++..-. ......+..+...+.+....+|-. +......|+....... ...++.+.+.+...
T Consensus 254 d~~l~~e~r~-~~~~~~l~~l~~g~~~~l~t~H~~-~~~~~~~Rl~~l~~~~~~~~~~~~~~i~~~l~ 319 (361)
T 2gza_A 254 TRILLAELRG-GEAYDFINVAASGHGGSITSCHAG-SCELTFERLALMVLQNRQGRQLPYEIIRRLLY 319 (361)
T ss_dssp SEEEESCCCS-THHHHHHHHHHTTCCSCEEEEECS-SHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHH
T ss_pred CEEEEcCchH-HHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHHHHhccccccCCCHHHHHHHHH
Confidence 4555655432 222222222222223345566653 4666778877654322 12466665544433
No 189
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.82 E-value=0.0049 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~ 23 (303)
+-|+|.|.+|+||||+.+.|..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4589999999999999999864
No 190
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.81 E-value=0.014 Score=48.29 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=31.7
Q ss_pred CEEEEEE-ccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 1 MALIVIC-GQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 1 M~LI~l~-G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
|++|.++ +-.|+||||+|..|+..+... +..|.++|-+
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~--g~~vlliD~D 39 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRS--GYNIAVVDTD 39 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEECC
Confidence 8888777 678899999999999999875 5678888744
No 191
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.81 E-value=0.00068 Score=58.71 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-|+|.|+||+||||+|+.++..++.
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~~~ 65 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEAQV 65 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998864
No 192
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.78 E-value=0.00067 Score=60.05 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
++|.|+|||||||+++.|+..++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC
Confidence 789999999999999999988753
No 193
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.78 E-value=0.0032 Score=57.47 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=28.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
|++|.|.||+||||+|..++...... +..|.+++-
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl 82 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL 82 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC
Confidence 89999999999999999999876542 456666663
No 194
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.77 E-value=0.0073 Score=57.08 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
-|+|.|+||+|||++|+.|+..+
T Consensus 169 ~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 169 GILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999987
No 195
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.75 E-value=0.00068 Score=57.23 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=22.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
..|+|+|++||||||+|.+|+++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4689999999999999999998764
No 196
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.74 E-value=0.0006 Score=57.88 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
.|+|.|+||+||||+|..|++.+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999885
No 197
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.74 E-value=0.00075 Score=59.40 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-++|.|+||+||||+|+.++..++.
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~~~ 77 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATETNA 77 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4889999999999999999998764
No 198
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.72 E-value=0.0056 Score=56.27 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+|+|+|++||||||+.+.|...+..
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccC
Confidence 7899999999999999999988764
No 199
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.71 E-value=0.0063 Score=56.80 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
++.|+|+|||||||++..|+-.
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHH
Confidence 7899999999999999988644
No 200
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.70 E-value=0.0015 Score=55.17 Aligned_cols=34 Identities=15% Similarity=0.329 Sum_probs=25.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+++|.|+|||||||+++.|+..+... +..+.+++
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~ 58 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVT 58 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEE
Confidence 68999999999999999999665432 23455544
No 201
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.69 E-value=0.0015 Score=58.79 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=29.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
.+|+|+|++||||||++..|+..+... +..+.+++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~ 140 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAA 140 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEcc
Confidence 379999999999999999999988654 456666653
No 202
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.69 E-value=0.00085 Score=60.02 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-|+|.|+||+||||+|+.|+..++.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~~~ 75 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANECQA 75 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTC
T ss_pred eEEEECCCCcCHHHHHHHHHHHhCC
Confidence 4899999999999999999998753
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.68 E-value=0.00085 Score=59.47 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-|+|.|+||+||||+|+.++..++.
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~~~ 80 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATECSA 80 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTC
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999998754
No 204
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.68 E-value=0.002 Score=55.84 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=29.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
++++++|.+||||||++..|+..+. . +..+.+++-
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~-~--g~~v~vvd~ 49 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE-D--NYKVAYVNL 49 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT-T--TSCEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH-C--CCeEEEEeC
Confidence 5899999999999999999999887 4 566777663
No 205
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.68 E-value=0.0011 Score=55.90 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=23.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|+|+||+||||+++.+++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 6899999999999999999998864
No 206
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.67 E-value=0.0069 Score=54.71 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=27.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc----cCCccEEEecCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES----EAKETVRIIDEA 40 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~----~~~~~v~~~~~~ 40 (303)
++.|.|.|||||||+|.+++...... +.+..+++++-+
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 78999999999999999998764221 113456666644
No 207
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.67 E-value=0.00093 Score=57.92 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=21.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHHc
Q 047717 4 IVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++|.|+|||||||+++.|+..+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998875
No 208
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.67 E-value=0.0056 Score=54.65 Aligned_cols=65 Identities=18% Similarity=0.383 Sum_probs=41.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSL 82 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~L~~~~~VIvD~~ 82 (303)
-++|+|+||+||||+|+.+++.++. .++.++...+ .. .. .+...+...+..+.++++|..
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~--------~~---~~----~l~~~l~~~~~~~~~l~lDEi 99 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAI--------EK---PG----DLAAILANSLEEGDILFIDEI 99 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTC--------CS---HH----HHHHHHTTTCCTTCEEEETTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEecccc--------CC---hH----HHHHHHHHhccCCCEEEEECC
Confidence 4789999999999999999998753 2333331111 10 11 222233334667789999987
Q ss_pred CCchH
Q 047717 83 NSIKG 87 (303)
Q Consensus 83 n~~k~ 87 (303)
.....
T Consensus 100 ~~l~~ 104 (324)
T 1hqc_A 100 HRLSR 104 (324)
T ss_dssp TSCCH
T ss_pred ccccc
Confidence 76543
No 209
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.67 E-value=0.006 Score=57.42 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=29.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.+|+++|++||||||++..|+..+... +..+.+++.+
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D 135 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAAD 135 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeecc
Confidence 368889999999999999999998754 4567666643
No 210
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.65 E-value=0.0037 Score=59.27 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=23.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+-++|.|+||+||||+|+.|++.++.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 35899999999999999999998754
No 211
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.64 E-value=0.001 Score=60.44 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|.|+||+||||+++.|+..++.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCC
Confidence 5889999999999999999998854
No 212
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.63 E-value=0.0014 Score=55.28 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.9
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
++.|+|+|.+||||||++..|...+..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 478999999999999999999987643
No 213
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.63 E-value=0.0018 Score=55.27 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=25.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+++|.|.|||||||++.+++...... +..+++++
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~ 58 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVA 58 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE
Confidence 78999999999999999987765432 34555554
No 214
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.62 E-value=0.0011 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHHc
Q 047717 4 IVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~ 26 (303)
|+|.|.||+|||++|+.|+....
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSST
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987653
No 215
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.61 E-value=0.00089 Score=55.61 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
+|+|+|.+||||||+|.+|+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 4899999999999999998865
No 216
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.58 E-value=0.002 Score=59.03 Aligned_cols=35 Identities=31% Similarity=0.378 Sum_probs=27.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+.|+|+|.||+||||++..|+..+... +..+.+++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~--g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIER--GHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC--CCceEEEe
Confidence 579999999999999999999988544 34454443
No 217
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.58 E-value=0.002 Score=53.42 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+++++|+|||||||++-+++..+..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999777776643
No 218
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.56 E-value=0.011 Score=48.12 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
+-|+|.|.+|+||||+.+.|...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999988643
No 219
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.54 E-value=0.0013 Score=58.18 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=22.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
++|.|+||+|||++|+.+++.++.
T Consensus 53 vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999999854
No 220
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.52 E-value=0.0032 Score=61.17 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=23.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+.++|.|+||+||||+|+.|+..++.
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 46899999999999999999999864
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.49 E-value=0.0018 Score=57.47 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|.|+||+||||+|+.|++.+..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcC
Confidence 5899999999999999999998854
No 222
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.49 E-value=0.0014 Score=55.37 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|++||||||+++.|+-.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998754
No 223
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.48 E-value=0.0014 Score=60.12 Aligned_cols=25 Identities=40% Similarity=0.504 Sum_probs=22.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-|+|.|+||+|||++|+.|++.++.
T Consensus 53 ~vll~GppGtGKT~la~~ia~~~~~ 77 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARLLDV 77 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3789999999999999999998854
No 224
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.47 E-value=0.0015 Score=55.99 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=19.5
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
++.|.|++||||||+++.|+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999999984
No 225
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.46 E-value=0.0015 Score=57.53 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=21.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHHc
Q 047717 4 IVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~ 26 (303)
|+|.|+|||||||+++.|+..+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 78999999999999999998875
No 226
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.46 E-value=0.0016 Score=54.71 Aligned_cols=24 Identities=33% Similarity=0.679 Sum_probs=21.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|.|++||||||+.+.|+..+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999998764
No 227
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.45 E-value=0.0017 Score=59.43 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=24.1
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+|.++|+|+||+||||+++.++..+..
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 358999999999999999999998854
No 228
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.45 E-value=0.0013 Score=55.96 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
+++|+|++||||||+++.|+..+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999876
No 229
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.45 E-value=0.015 Score=52.15 Aligned_cols=131 Identities=11% Similarity=-0.004 Sum_probs=64.9
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHcccc-CCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHHh--cCCCCEE
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESE-AKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRS--VSKDNII 77 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~-~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~~--L~~~~~V 77 (303)
+|.+++.|+||+||||+|+.|++..+... ...++..++..+ ....-..+|..+. .+... .+..++|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~----------~~~~id~ir~li~-~~~~~p~~~~~kvv 86 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG----------ENIGIDDIRTIKD-FLNYSPELYTRKYV 86 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS----------SCBCHHHHHHHHH-HHTSCCSSSSSEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc----------CCCCHHHHHHHHH-HHhhccccCCceEE
Confidence 47899999999999999999998643210 123444444211 0111234554333 23221 2345799
Q ss_pred EEcCCCCc-hHHHHHHHHHHHHcCCcEEEEEEecCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHh
Q 047717 78 IVDSLNSI-KGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRF 142 (303)
Q Consensus 78 IvD~~n~~-k~~R~~l~~~ak~~~~~~~vI~l~~~~e~~~~R~~~R~~~~~~~~~~e~~~~l~~r~ 142 (303)
|+|..... +..-..|.....+.....++|.+...+.....-+..|.-.-....++++...+..+.
T Consensus 87 iIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 87 IVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHHHHHHHHHHH
T ss_pred EeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHHHHHHHHHHHh
Confidence 99975433 222333444444433344555554444433333334411111122445555555543
No 230
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.45 E-value=0.003 Score=57.16 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=30.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.+|+|+|++||||||++..|+..+... +..|.+++.+
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D 142 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAAD 142 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 479999999999999999999988754 5667776643
No 231
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.44 E-value=0.00083 Score=58.62 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=22.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|+|.|+||+|||++|+.|+..++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCC
Confidence 6799999999999999999988653
No 232
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.42 E-value=0.014 Score=52.73 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.++|.|+||+||||+|+.+++.+...
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred eEEEECCCCchHHHHHHHHHHHHhCC
Confidence 58999999999999999999998753
No 233
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.40 E-value=0.0018 Score=59.13 Aligned_cols=25 Identities=40% Similarity=0.638 Sum_probs=23.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-++|.|+||+|||++|+.+++.++.
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999999874
No 234
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.35 E-value=0.0018 Score=61.27 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=23.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-|+|.|+||+||||+|+.|++.++.
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4899999999999999999999865
No 235
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.35 E-value=0.0016 Score=58.90 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=22.5
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l 25 (303)
||+++|+|+.||||||+.+.|....
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 5899999999999999999988654
No 236
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.34 E-value=0.0039 Score=59.79 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-|+|.|+||+|||++|+.|+..++.
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~~~ 264 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANETGA 264 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred cEEEECcCCCCHHHHHHHHHHHhCC
Confidence 3899999999999999999988754
No 237
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.33 E-value=0.0038 Score=54.35 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=33.0
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
|.+|.++|-.|+||||+|..|+..+... +.+|.++|-+
T Consensus 1 M~vI~vs~KGGvGKTT~a~nLA~~la~~--G~~VlliD~D 38 (269)
T 1cp2_A 1 MRQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCD 38 (269)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEEC
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHHHC--CCcEEEEcCC
Confidence 8899999999999999999999999765 6778887744
No 238
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.33 E-value=0.0022 Score=59.41 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+|+|.|+|||||||+++.|+..++.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~~g 195 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELCGG 195 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCC
Confidence 7899999999999999999987643
No 239
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.33 E-value=0.0019 Score=59.42 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=22.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-|+|.|+||+||||+|+.|++.++.
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999998854
No 240
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.33 E-value=0.0035 Score=53.77 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=27.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEe
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRII 37 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~ 37 (303)
.+++++|.|||||||.+-+++..+... +..+.++
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEE
Confidence 489999999999999999998887654 3445554
No 241
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.32 E-value=0.0039 Score=56.03 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=27.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
+|.|.|++||||||+++.|+..+... +..+.+.+.
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~ 138 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAG 138 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEee
Confidence 78999999999999999999888653 345555443
No 242
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.32 E-value=0.003 Score=56.79 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=26.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc-cccCCccEEEe
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK-ESEAKETVRII 37 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~-~~~~~~~v~~~ 37 (303)
-++|.|+||+|||++|..|+..+. .. +..+..+
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~~~~--g~~v~~~ 187 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELSEKK--GVSTTLL 187 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHS--CCCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEE
Confidence 578999999999999999999887 54 3445443
No 243
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.32 E-value=0.002 Score=61.06 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
-++|.|+||+|||++|+.+++.++
T Consensus 65 ~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEECCCcCCHHHHHHHHHHHhC
Confidence 478999999999999999999987
No 244
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.30 E-value=0.0038 Score=55.16 Aligned_cols=38 Identities=32% Similarity=0.334 Sum_probs=32.8
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
|++|.++|-.|+||||+|..|+..|... +.+|.++|-+
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~--G~rVlliD~D 39 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--GKKVMIVGCD 39 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC--CCeEEEEecC
Confidence 8889999999999999999999999765 5678887743
No 245
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.29 E-value=0.0024 Score=56.64 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=26.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+++|.|.|||||||+++.|+-.+... .+..+.+++
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~ 71 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAM 71 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEe
Confidence 78999999999999999999877532 133455554
No 246
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.27 E-value=0.0037 Score=57.24 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+.|.|+|+|||||||+.+.|...+..
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 68999999999999999999987644
No 247
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.24 E-value=0.031 Score=52.63 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=28.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
+++|+|.||+||||+|..++...... .+..|.+++-
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~sl 237 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSL 237 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEC
Confidence 79999999999999999999876432 1445766653
No 248
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.23 E-value=0.0024 Score=54.40 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
++.|.|+|||||||++..|+..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 7899999999999999999875
No 249
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.23 E-value=0.011 Score=55.77 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=53.0
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccc---cCCc------cEEEecCCccCCCccccCCCch---hhHHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKES---EAKE------TVRIIDEASFHLDRNQSYASMP---AEKNLRGVLRSEVD 68 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~---~~~~------~v~~~~~~~~~~~~~~~y~~~~---~e~~~r~~l~~~v~ 68 (303)
||.|+|.|.|++||||+.+.|...-... ..+. ..+..++..+.+.+..++.... -++.++ ....
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~----~~~~ 76 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMK----EVTL 76 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHH----HHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHH----HHHH
Confidence 7899999999999999999987432110 0000 0011111112221111222110 112233 2222
Q ss_pred HhcC--CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCH
Q 047717 69 RSVS--KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEE 112 (303)
Q Consensus 69 ~~L~--~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~ 112 (303)
.++. ..-++|+|+.........++..+.+..+.+..+|.-.++.
T Consensus 77 ~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~ 122 (439)
T 1mky_A 77 NMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAEN 122 (439)
T ss_dssp HHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCS
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 3333 3356778987654444445555556667787777766664
No 250
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.22 E-value=0.0057 Score=51.30 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=19.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
+-|+|.|.+|+||||+.+.|...
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 46899999999999999988654
No 251
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.22 E-value=0.0025 Score=57.54 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-|+|+|+||+|||++|+.+++.++.
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~ 81 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSA 81 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999988764
No 252
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.22 E-value=0.0029 Score=55.54 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=22.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+++|+|+.||||||+.+.|...+..
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhCCC
Confidence 7899999999999999999987754
No 253
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.20 E-value=0.0036 Score=52.86 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.7
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHc
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|+|+|.+||||||++..|...+.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 36799999999999999999987753
No 254
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.19 E-value=0.0031 Score=54.92 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.5
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|+|+|.||+|||++|+.|++.+..
T Consensus 32 vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 32 VLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp EEEECCTTSCHHHHHHHHHHTSTT
T ss_pred EEEECCCCCcHHHHHHHHHHhcCc
Confidence 789999999999999999987653
No 255
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.18 E-value=0.0026 Score=58.35 Aligned_cols=25 Identities=32% Similarity=0.639 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-|+|.|+||+|||++|+.|+..++.
T Consensus 119 ~vLl~GppGtGKT~la~aia~~~~~ 143 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQSGA 143 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4889999999999999999998754
No 256
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.18 E-value=0.005 Score=62.42 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=22.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
|+|.|+||+|||.+|+.++..++..
T Consensus 514 vLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 514 VLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred EEEecCCCCCchHHHHHHHHHhCCc
Confidence 6899999999999999999988754
No 257
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.18 E-value=0.0049 Score=55.30 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=27.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
-+|.|.|+.||||||+++.|+..+... +..+.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~--~g~V~l~g 135 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAA 135 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 378999999999999999999988643 33455544
No 258
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.17 E-value=0.0027 Score=57.28 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-++|.|+||+||||+|+.+++.+..
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3789999999999999999998753
No 259
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.17 E-value=0.0044 Score=52.90 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=24.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+++|+|.||+|||++|-+++...... .+..+.+++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s 66 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVT 66 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeec
Confidence 79999999999999999987543211 123455554
No 260
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.15 E-value=0.0029 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=22.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
.|.|.|++||||||+.+.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 588999999999999999998875
No 261
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.14 E-value=0.0035 Score=50.79 Aligned_cols=23 Identities=13% Similarity=0.382 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999999999999987
No 262
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.12 E-value=0.0052 Score=55.35 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=27.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+++|+|.||+||||+|.+++...... +..+.+++
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~--g~~vl~~s 103 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHS 103 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT--TCEEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 79999999999999999999776443 24566665
No 263
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.11 E-value=0.0031 Score=57.61 Aligned_cols=24 Identities=13% Similarity=0.319 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
.++|+|+||+||||+++.+++.+.
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
No 264
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.07 E-value=0.0055 Score=56.34 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=28.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
+++|.|.|||||||+|.+++...... +..+.+++-
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~ 99 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDA 99 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeC
Confidence 79999999999999999998876543 345666664
No 265
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.03 E-value=0.0019 Score=51.12 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=19.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHH
Q 047717 4 IVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l 25 (303)
|+|.|.||+|||++|+.|+...
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTT
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 7899999999999999876543
No 266
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.03 E-value=0.0048 Score=56.02 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|+|+||+||||+++.+++.+..
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988753
No 267
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.00 E-value=0.0042 Score=54.69 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
+++|.|+|||||||++..++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 789999999999999999987654
No 268
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.00 E-value=0.0042 Score=55.90 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=21.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|++||||||+++.|+..+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 68999999999999999999887
No 269
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.99 E-value=0.0024 Score=57.58 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=22.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
++|.|+||+|||++|+.|+..++.
T Consensus 49 vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 789999999999999999998864
No 270
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.99 E-value=0.0034 Score=55.68 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
|-++|+|+||+||||+|+.+++.+.
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECcCCcCHHHHHHHHHHHhc
Confidence 3489999999999999999999874
No 271
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.99 E-value=0.0035 Score=60.41 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+.++|+|+||+||||+|+.+++.++.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~~ 103 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELGY 103 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 36899999999999999999999854
No 272
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.97 E-value=0.0035 Score=51.70 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|+|+|.+|+||||+|..|.++
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 3899999999999999998874
No 273
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.96 E-value=0.0022 Score=57.95 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=22.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|+|.|+||+|||++|+.|++.++.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEECCCCccHHHHHHHHHHhCcc
Confidence 789999999999999999998763
No 274
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.95 E-value=0.0061 Score=55.50 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.+|.|+|.||+||||+.+.|+..+...
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999887543
No 275
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.95 E-value=0.036 Score=49.52 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
.|+|.|.||+||||+.+.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999864
No 276
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.93 E-value=0.0071 Score=56.80 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=27.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
+|+|+|+.||||||+.+.|...+... ...++..++
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~--~g~I~~~ed 203 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSS--ERNILTVED 203 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEEES
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEEecc
Confidence 78999999999999999999888643 234555443
No 277
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.92 E-value=0.0075 Score=55.48 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=27.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+|.|.|+.||||||+++.|+..+... +..+.+.+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~~--~G~V~l~g 192 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAA 192 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEC
T ss_pred EEEEEcCCCChHHHHHHHHHhhcccc--CCEEEEec
Confidence 78999999999999999999988643 33455544
No 278
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.92 E-value=0.0047 Score=56.15 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=23.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|+|+||+||||+|+.+++.+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5799999999999999999999865
No 279
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.90 E-value=0.0079 Score=57.59 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=26.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
+|.|.|++||||||+++.|+..+... +..+.+.+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~--~G~V~l~g 328 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQ--GKSVMLAA 328 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEC
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhc--CCeEEEec
Confidence 78999999999999999999887643 33455543
No 280
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.88 E-value=0.0041 Score=54.37 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=20.9
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
||-|+|.|.|||||||+.+.|...
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 889999999999999999998643
No 281
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.88 E-value=0.0082 Score=53.47 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=32.0
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
|.+|.|+|-.|+||||+|-.|+..|... +..|.++|-+
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D 78 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCD 78 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEES
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 5688888999999999999999999875 5678887743
No 282
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.88 E-value=0.0045 Score=59.12 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=22.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|+|.|+||+||||+|+.++..++.
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~ 75 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANV 75 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 789999999999999999998764
No 283
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.86 E-value=0.011 Score=60.01 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-|+|+|+|||||||+|+.|+..++.
T Consensus 240 ~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp EEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCC
Confidence 4899999999999999999987654
No 284
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.86 E-value=0.0081 Score=53.64 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=29.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
.+|.++|.+||||||++..|+..+... +..+.+++.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~ 134 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAA 134 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecC
Confidence 368888999999999999999988654 456666664
No 285
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.81 E-value=0.0076 Score=54.88 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=23.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++.|.|+|||||||+.+.|...+..
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 47899999999999999999987753
No 286
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.78 E-value=0.026 Score=48.15 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~ 23 (303)
+-|+|.|.+|+||||+.+.|..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHcC
Confidence 3589999999999999998864
No 287
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.77 E-value=0.0084 Score=51.51 Aligned_cols=34 Identities=21% Similarity=0.097 Sum_probs=27.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
.|++.|.||+||||++-.++..+... +.+|.+.+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~--G~~V~v~d 41 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ--GVRVMAGV 41 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC--CCCEEEEE
Confidence 48999999999999999999988765 45665544
No 288
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=95.77 E-value=0.15 Score=43.83 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=29.0
Q ss_pred EEEEE-EccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVI-CGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l-~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.+|.+ .|-.|+||||+|-.|+..+... +..|.++|-+
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~--g~~VlliD~D 40 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQL--GHDVTIVDAD 40 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhC--CCcEEEEECC
Confidence 44444 6788999999999999999765 5678887744
No 289
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.75 E-value=0.0096 Score=53.84 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=28.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
++.|.|+|||||||+|-+++......+.+..+++++.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 57899999999999999988766543224456677643
No 290
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.74 E-value=0.0069 Score=48.47 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~ 23 (303)
..|+|.|.||+||||+.+.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999864
No 291
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.74 E-value=0.024 Score=53.66 Aligned_cols=109 Identities=14% Similarity=0.094 Sum_probs=51.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc---cCCc--cE--EEecC--CccCCCccccCCCch--hhHHHHHHHHHHHHHh
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES---EAKE--TV--RIIDE--ASFHLDRNQSYASMP--AEKNLRGVLRSEVDRS 70 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~---~~~~--~v--~~~~~--~~~~~~~~~~y~~~~--~e~~~r~~l~~~v~~~ 70 (303)
|.|+|+|.||+||||+.+.|...-... ..+. +. ..+.. ..+.+.+..++.... ..+.++......+..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~- 102 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE- 102 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH-
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh-
Confidence 689999999999999999875321100 0000 00 00110 111111111121110 123333222222211
Q ss_pred cCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCH
Q 047717 71 VSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEE 112 (303)
Q Consensus 71 L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~ 112 (303)
...-++++|+.........++....+..+.+..+|.=.++.
T Consensus 103 -ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~ 143 (456)
T 4dcu_A 103 -ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDN 143 (456)
T ss_dssp -CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC--
T ss_pred -CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccc
Confidence 23456778887655555566666666677777776655553
No 292
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.73 E-value=0.067 Score=58.29 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=28.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
+|+|.|.||+||||+|.+++...... +..+.+++-
T Consensus 734 lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~ 768 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDA 768 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECT
T ss_pred eEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEec
Confidence 79999999999999999999877543 345666663
No 293
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.73 E-value=0.0067 Score=51.78 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=30.4
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
|.+ .++|-.|+||||+|..|+..+... +.+|.++|-+
T Consensus 1 mkI-~vs~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D 37 (254)
T 3kjh_A 1 MKL-AVAGKGGVGKTTVAAGLIKIMASD--YDKIYAVDGD 37 (254)
T ss_dssp CEE-EEECSSSHHHHHHHHHHHHHHTTT--CSCEEEEEEC
T ss_pred CEE-EEecCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 664 449999999999999999999875 5778887743
No 294
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.73 E-value=0.011 Score=55.63 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~ 23 (303)
|.|+|.|.||+||||+.+.|..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEE
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999998753
No 295
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.73 E-value=0.006 Score=56.37 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=22.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+|+|+|++||||||+.+.|...+..
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCc
Confidence 7899999999999999999988764
No 296
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.70 E-value=0.077 Score=57.80 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=28.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
+++|.|.|||||||+|-+++...... +..+.+++-+
T Consensus 385 lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E 420 (1706)
T 3cmw_A 385 IVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE 420 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcc
Confidence 79999999999999999998776543 4466776643
No 297
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.70 E-value=0.0049 Score=53.18 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+-.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999887544
No 298
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.69 E-value=0.011 Score=49.40 Aligned_cols=34 Identities=26% Similarity=0.230 Sum_probs=26.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEe
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRII 37 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~ 37 (303)
.+++++|++||||||.+-.++..+... +..+.++
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~--g~kV~v~ 42 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIA--KQKIQVF 42 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEE
Confidence 489999999999999999998887544 3445544
No 299
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.64 E-value=0.018 Score=58.81 Aligned_cols=25 Identities=28% Similarity=0.427 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-++|+|+||+||||+++.|+..+..
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3689999999999999999998843
No 300
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.62 E-value=0.0053 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=20.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+-.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999987544
No 301
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.62 E-value=0.006 Score=58.62 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=21.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHHc
Q 047717 4 IVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~ 26 (303)
|+|.|+||+||||+|+.|+..++
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998865
No 302
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.60 E-value=0.085 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
.-|+|.|.|||||||+.+.|...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999998653
No 303
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.59 E-value=0.0068 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|.|+.||||||+.+.|+-.+.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999876543
No 304
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.59 E-value=0.024 Score=50.73 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
.|.|+|.||+||||+.+.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 689999999999999998864
No 305
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.58 E-value=0.034 Score=53.17 Aligned_cols=36 Identities=11% Similarity=-0.041 Sum_probs=28.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
+++|.|.||+||||+|.+++...... .+..+.+++-
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~ 279 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAML 279 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEES
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEec
Confidence 79999999999999999999877542 1345666653
No 306
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.58 E-value=0.0058 Score=51.76 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
++.|.|+.||||||+.+.|+-.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999876
No 307
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.56 E-value=0.0068 Score=53.40 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
-|+|.|+||+|||++|..|+..+.
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhhhc
Confidence 489999999999999999998753
No 308
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.55 E-value=0.0076 Score=47.68 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+||||||+.+.|..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 489999999999999999875
No 309
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.54 E-value=0.011 Score=55.94 Aligned_cols=36 Identities=31% Similarity=0.479 Sum_probs=28.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
+++|.|.||+||||++..++...... .+..|.+++-
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~ 240 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSL 240 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEEC
Confidence 79999999999999999999876532 1345666663
No 310
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.54 E-value=0.0061 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|.|+.||||||+.+.|+-.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999876553
No 311
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.53 E-value=0.014 Score=53.24 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=27.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc----cCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKES----EAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~----~~~~~v~~~~~~ 40 (303)
.++.|.|.|||||||+|.+++...... +.+..+++++-+
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 378999999999999999998763221 013456666643
No 312
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.53 E-value=0.0071 Score=49.07 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=19.6
Q ss_pred CEEEEEEccCCCCHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~ 23 (303)
|.-|+|.|.+|+||||+.+.|..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 56799999999999999998763
No 313
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.52 E-value=0.007 Score=55.40 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l 25 (303)
.++.|.|+|||||||+++.|+-..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998876
No 314
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.52 E-value=0.012 Score=55.65 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=28.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
+++|+|.||+||||+|-+++...... +..+.+++-
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSl 233 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSL 233 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECS
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEEC
Confidence 89999999999999999999877543 456777663
No 315
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.49 E-value=0.0066 Score=55.72 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.+.|.|++||||||+++.|+..+..
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999988753
No 316
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.46 E-value=0.0074 Score=57.42 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-++|.|+||+|||++|+.|+..+..
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999853
No 317
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.45 E-value=0.0087 Score=47.13 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.||+||||+.+.|..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998864
No 318
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.42 E-value=0.0084 Score=49.37 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
.|+|.|.+||||||+.+.|....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999987643
No 319
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.41 E-value=0.007 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+-.+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68899999999999999987654
No 320
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.41 E-value=0.071 Score=58.90 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=28.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
+++|.|+||+||||+|.+++...... +..+.+++-+
T Consensus 385 lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E 420 (2050)
T 3cmu_A 385 IVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE 420 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcC
Confidence 79999999999999999998877543 3457776643
No 321
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.40 E-value=0.0071 Score=53.53 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+-.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999987554
No 322
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.40 E-value=0.0094 Score=49.83 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
+-|+|.|.+|+||||+.+.|...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999998754
No 323
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.39 E-value=0.0088 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
++.|.|+.||||||+.+.|+-.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999998764
No 324
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=95.38 E-value=0.016 Score=52.71 Aligned_cols=38 Identities=21% Similarity=0.376 Sum_probs=32.1
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
|.+++++|..|+||||+|..|+..+... +.+|.++|-+
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D 53 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTD 53 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECC
Confidence 3588999999999999999999999765 5778887754
No 325
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.37 E-value=0.0095 Score=46.94 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|++.|.+||||||+.+.|..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998874
No 326
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.36 E-value=0.016 Score=50.99 Aligned_cols=38 Identities=34% Similarity=0.410 Sum_probs=30.9
Q ss_pred CEEEEEEcc-CCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 1 MALIVICGQ-PSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 1 M~LI~l~G~-PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
|.+|+|+|. +|+||||+|..|+..+... +..|.++|-+
T Consensus 82 ~kvI~vts~kgG~GKTt~a~nLA~~lA~~--G~rVLLID~D 120 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKSTIAANLAVAYAQA--GYKTLIVDGD 120 (271)
T ss_dssp CCEEEEECSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhC--CCeEEEEeCC
Confidence 457777765 9999999999999999764 6788888854
No 327
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.34 E-value=0.0077 Score=52.14 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|.|+.||||||+.+.|+-.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999876543
No 328
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.34 E-value=0.012 Score=59.28 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-++|+|.||+||||+|+.|+..+..
T Consensus 209 ~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 209 NPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999998854
No 329
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.33 E-value=0.0078 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+-.+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999987654
No 330
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.33 E-value=0.0096 Score=49.18 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|+|.|.+||||||+.+.|...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998764
No 331
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.32 E-value=0.0095 Score=53.41 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHc
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++++|+|++|+||||+++++++.+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998875
No 332
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.31 E-value=0.0079 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=20.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+-.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999987554
No 333
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.30 E-value=0.019 Score=51.81 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=31.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.+++++|.+|+||||+|..|+..+... +.+|.++|-+
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~D 51 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARS--GKKTLVISTD 51 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHC--CCcEEEEeCC
Confidence 478899999999999999999998765 6778888754
No 334
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.28 E-value=0.0084 Score=51.45 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|.|+.||||||+.+.|+-.+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 688999999999999999876553
No 335
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.28 E-value=0.0084 Score=51.84 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=20.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+-.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999987554
No 336
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.27 E-value=0.0083 Score=52.41 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+-.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999987554
No 337
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.26 E-value=0.011 Score=46.79 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.9
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+||||||+.+.|..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999998864
No 338
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.25 E-value=0.01 Score=52.18 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
++.|.|+.||||||+.+.|+-.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999998764
No 339
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.25 E-value=0.01 Score=47.03 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=18.8
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|++.|.+|+||||+.+.|..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999998864
No 340
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.25 E-value=0.014 Score=45.80 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|++.|.+||||||+.+.|...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998753
No 341
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.24 E-value=0.0051 Score=59.13 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHHc
Q 047717 4 IVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~ 26 (303)
|+|.|+||+|||++|+.|+..+.
T Consensus 44 VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 44 VFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEECCSSSSHHHHHHHGGGGBS
T ss_pred eEeecCchHHHHHHHHHHHHHHh
Confidence 78999999999999999998774
No 342
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.23 E-value=0.011 Score=46.61 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 343
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.22 E-value=0.018 Score=51.49 Aligned_cols=37 Identities=32% Similarity=0.616 Sum_probs=30.6
Q ss_pred EEEEEEcc-CCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQ-PSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~-PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.+|+|+|. +|+||||+|..|+..+... +..|.++|-+
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~--G~rVLLID~D 142 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQS--DQKVLFIDAD 142 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhC--CCcEEEEECC
Confidence 46777775 8999999999999999764 6788888854
No 344
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.22 E-value=0.01 Score=47.27 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.8
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.||+||||+.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 489999999999999998763
No 345
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.22 E-value=0.011 Score=46.76 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|+|.|.+|+||||+.+.|...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999998653
No 346
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.22 E-value=0.0088 Score=52.54 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+-.+
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 68899999999999999987554
No 347
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.22 E-value=0.011 Score=47.35 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+||||||+.+.|..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998865
No 348
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.22 E-value=0.0074 Score=51.37 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=19.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+-.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999986544
No 349
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.012 Score=48.04 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
+-|+|.|.+||||||+.+.|...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999988653
No 350
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.21 E-value=0.011 Score=46.77 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.9
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999999998864
No 351
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.21 E-value=0.011 Score=47.23 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998864
No 352
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.21 E-value=0.0089 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+-.+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999987654
No 353
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.19 E-value=0.0091 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+-.+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999987654
No 354
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.19 E-value=0.011 Score=46.93 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=18.4
Q ss_pred EEEEEccCCCCHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLA 22 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La 22 (303)
-|+|.|.||+||||+.+.|.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999885
No 355
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.19 E-value=0.01 Score=46.99 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=18.1
Q ss_pred EEEEEccCCCCHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLA 22 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La 22 (303)
-|+|.|.||+||||+.+.|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999999874
No 356
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.18 E-value=0.011 Score=53.04 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 047717 4 IVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
|+|+|.||+|||++|+.|......
T Consensus 28 vLi~Ge~GtGKt~lAr~i~~~~~~ 51 (304)
T 1ojl_A 28 VLIHGDSGTGKELVARALHACSAR 51 (304)
T ss_dssp EEEESCTTSCHHHHHHHHHHHSSC
T ss_pred EEEECCCCchHHHHHHHHHHhCcc
Confidence 789999999999999999987643
No 357
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.15 E-value=0.017 Score=56.50 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=26.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEe
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRII 37 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~ 37 (303)
.+++|+|+||+||||+++.|...+... +..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~--g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL--GLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEe
Confidence 368999999999999999999888654 3445443
No 358
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.15 E-value=0.011 Score=47.74 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|+|.|.||+||||+.+.|...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998753
No 359
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.14 E-value=0.0097 Score=52.06 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=20.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+-.+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999987544
No 360
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.13 E-value=0.012 Score=46.60 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.9
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 489999999999999998874
No 361
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.12 E-value=0.022 Score=51.95 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=31.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.+++++|.+|+||||+|..|+..+... +.+|.++|-+
T Consensus 27 ~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~D 63 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTMSAATGVYLAEK--GLKVVIVSTD 63 (349)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHS--SCCEEEEECC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 478889999999999999999998765 6778888744
No 362
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.11 E-value=0.01 Score=51.74 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+-.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999987654
No 363
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.09 E-value=0.013 Score=47.73 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|++.|.+|+||||+.+.|...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
No 364
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.08 E-value=0.013 Score=46.27 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999875
No 365
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.06 E-value=0.015 Score=47.20 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~ 23 (303)
.-|+|.|.+|+||||+.+.|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999875
No 366
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.06 E-value=0.011 Score=52.05 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+-.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999987554
No 367
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.05 E-value=0.021 Score=52.22 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=32.1
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHc--cccCCccEEEecCC
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALK--ESEAKETVRIIDEA 40 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~--~~~~~~~v~~~~~~ 40 (303)
|.+++++|..|+||||+|..|+..+. .. +..|.++|-+
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D 57 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTD 57 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECC
Confidence 45899999999999999999999987 54 6778887754
No 368
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.05 E-value=0.013 Score=46.88 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|+|.|.+|+||||+.+.|...
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998754
No 369
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.04 E-value=0.014 Score=46.71 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=19.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|+|.|.+|+||||+.+.|...
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
No 370
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.04 E-value=0.012 Score=47.98 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.8
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999998764
No 371
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.02 E-value=0.014 Score=47.32 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999875
No 372
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.01 E-value=0.011 Score=52.39 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+-.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999987654
No 373
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.00 E-value=0.014 Score=46.26 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998854
No 374
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.99 E-value=0.014 Score=51.38 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
.+.|.|++||||||+.+.|.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987664
No 375
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=94.99 E-value=0.098 Score=50.49 Aligned_cols=39 Identities=8% Similarity=0.219 Sum_probs=27.6
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC
Q 047717 73 KDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE 111 (303)
Q Consensus 73 ~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~ 111 (303)
.+-++|+|+.......-..++..++..+.+..+|.-.++
T Consensus 107 D~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~D 145 (528)
T 3tr5_A 107 DSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMD 145 (528)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 456888999886666666677777778888766654443
No 376
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.98 E-value=0.0093 Score=54.13 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=21.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
+++|+|++||||||+.+.|+..+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 5899999999999999998877643
No 377
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.98 E-value=0.015 Score=46.63 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~ 23 (303)
+-|+|.|.+|+||||+.+.|..
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998864
No 378
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.98 E-value=0.011 Score=51.52 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|.|+.||||||+.+.|+-.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 688999999999999999876553
No 379
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.98 E-value=0.013 Score=47.00 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=18.7
Q ss_pred EEEEEEccCCCCHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLA 22 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La 22 (303)
.-|+|.|.+|+||||+.+.|.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999875
No 380
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.97 E-value=0.013 Score=52.61 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=21.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
.++.|.|.|||||||+|.+++..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 381
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.97 E-value=0.014 Score=47.06 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999874
No 382
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.96 E-value=0.016 Score=47.08 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
+.+|+|..||||||+.+.|.-.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 678999999999999999887664
No 383
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.95 E-value=0.014 Score=46.73 Aligned_cols=21 Identities=43% Similarity=0.711 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.||+||||+.+.|..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999999999874
No 384
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.94 E-value=0.015 Score=47.41 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=19.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|+|.|.+|+||||+.+.|...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998754
No 385
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.92 E-value=0.0086 Score=49.69 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~ 23 (303)
..|+|.|.+||||||+.+.|..
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999998763
No 386
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.89 E-value=0.015 Score=46.93 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+||||||+.+.|..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998864
No 387
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.89 E-value=0.014 Score=52.11 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++++|+|++|+||||+++++++..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 388
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.89 E-value=0.016 Score=45.69 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=18.4
Q ss_pred EEEEccCCCCHHHHHHHHHH
Q 047717 4 IVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~ 23 (303)
|+|.|.+|+||||+.+.|..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999864
No 389
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.89 E-value=0.015 Score=46.52 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=18.9
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999864
No 390
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.88 E-value=0.015 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|+|.|.+|+||||+.+.|...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999998753
No 391
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.88 E-value=0.13 Score=56.96 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=29.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
+++|.|.||+||||+|.+++...... +..+++++-+
T Consensus 734 lilIaG~PG~GKTtLalqlA~~~a~~--g~~VlyiS~E 769 (2050)
T 3cmu_A 734 IVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE 769 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECC
Confidence 79999999999999999999887653 3457777643
No 392
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.86 E-value=0.016 Score=46.59 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999998874
No 393
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.84 E-value=0.016 Score=47.26 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 489999999999999998875
No 394
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.83 E-value=0.013 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+-.+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999987655
No 395
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.83 E-value=0.015 Score=53.51 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=22.4
Q ss_pred EEEEE--EccCCCCHHHHHHHHHHHHcc
Q 047717 2 ALIVI--CGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 2 ~LI~l--~G~PGSGKSTlA~~La~~l~~ 27 (303)
..++| +|+||+||||+++.+++.+..
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 36777 999999999999999988754
No 396
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.83 E-value=0.017 Score=54.67 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKES 28 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~ 28 (303)
.++|.|.|||||||++..++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999988654
No 397
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.83 E-value=0.017 Score=46.41 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=18.9
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 489999999999999998864
No 398
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.82 E-value=0.015 Score=53.41 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|.|+.||||||+.+.|+-.+.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 688999999999999999987553
No 399
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.81 E-value=0.014 Score=58.79 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=22.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
-++|.|+||+|||++|+.|++.+.
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999984
No 400
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.81 E-value=0.017 Score=46.29 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=18.9
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999999998865
No 401
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.80 E-value=0.024 Score=52.37 Aligned_cols=35 Identities=31% Similarity=0.285 Sum_probs=26.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
-++|+|++||||||+++.|...+... +..++++|.
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~--~~~~~~~D~ 71 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQ--GSRVIIIDP 71 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEES
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHC--CCEEEEEeC
Confidence 36899999999999999998776443 455666653
No 402
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.80 E-value=0.017 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=19.8
Q ss_pred CEEEEEEccCCCCHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~ 23 (303)
|.-|+|.|.+||||||+++++.-
T Consensus 33 ~~killlG~~~SGKST~~kq~~i 55 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTFLKQMRI 55 (362)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCcHHHHHHHHHH
Confidence 34689999999999999999843
No 403
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.79 E-value=0.017 Score=46.54 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|+|.|.+|+||||+.+.|...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998753
No 404
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=94.74 E-value=0.19 Score=44.64 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=30.2
Q ss_pred HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC-HHHHHHHHHHhh
Q 047717 65 SEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE-EDHCRKWNKERH 123 (303)
Q Consensus 65 ~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~-~e~~~~R~~~R~ 123 (303)
+.+...+.+|..||+|.. ..+.+ .+......+ .+||+.+| .+++.+ +.+|+
T Consensus 185 ~~V~~~~~~G~~vildid--~~g~~----~l~~~~~~p-i~IfI~pps~~~L~~-L~~R~ 236 (295)
T 1kjw_A 185 QSVREVAEQGKHCILDVS--ANAVR----RLQAAHLHP-IAIFIRPRSLENVLE-INKRI 236 (295)
T ss_dssp HHHHHHHHTTCEEEECCC--TTHHH----HHHHTTCCC-EEEEECCSSHHHHHH-HCTTS
T ss_pred HHHHHHHhcCCeEEEEeC--HHHHH----HHHhcccCC-eEEEEECCCHHHHHH-HHhcC
Confidence 346677788999999973 23322 111122234 68888876 555555 65554
No 405
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.74 E-value=0.018 Score=46.34 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.9
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999998864
No 406
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.73 E-value=0.019 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
.-|+|.|.|||||||+.+.|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998653
No 407
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=94.70 E-value=0.03 Score=51.21 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=31.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHc--cccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALK--ESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~--~~~~~~~v~~~~~~ 40 (303)
.+++++|-+|.||||+|..|+-.+. .. +..|.++|-+
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~--G~rVLLvD~D 57 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQP--NKQFLLISTD 57 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECC
Confidence 4789999999999999999999997 54 6778888754
No 408
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=94.68 E-value=0.053 Score=54.37 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecCH-HHHHHHHHHhh
Q 047717 62 VLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEE-DHCRKWNKERH 123 (303)
Q Consensus 62 ~l~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~~-e~~~~R~~~R~ 123 (303)
.-.+.+...+.+|..||+|.. ..+ +..+......+ ++||+..|. +++.+ +..|+
T Consensus 608 t~~~~v~~~~~~g~~~ildi~--~~~----~~~l~~~~~~p-~~ifi~pps~~~L~~-l~~R~ 662 (721)
T 2xkx_A 608 TSVQSVREVAEQGKHCILDVS--ANA----VRRLQAAHLHP-IAIFIRPRSLENVLE-INKRI 662 (721)
T ss_pred eeHHHHHHHHHCCCcEEEeCC--HHH----HHHHHhcccCC-EEEEEeCCcHHHHHH-HhccC
Confidence 344567778889999999973 122 11121112234 688888764 55544 65554
No 409
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.67 E-value=0.013 Score=57.45 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
.++|.|+||+||||+|+.|+..+..
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCc
Confidence 4789999999999999999998754
No 410
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.66 E-value=0.032 Score=50.47 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=31.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.+++++|-+|+||||+|..|+..+... +..|.++|-+
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~--G~rVllvD~D 56 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKV--RSSVLLISTD 56 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTS--SSCEEEEECC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHC--CCeEEEEECC
Confidence 478899999999999999999999865 5678887744
No 411
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.65 E-value=0.019 Score=47.16 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=18.9
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+||||||+.+.|..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998764
No 412
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.65 E-value=0.016 Score=55.84 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=25.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
.|+|+|++||||||+.+.|...+.. ...++.+++
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~---~~giitied 295 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPP---DAKVVSIED 295 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCT---TCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCC---CCCEEEEcC
Confidence 4899999999999999998876643 234455543
No 413
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.65 E-value=0.018 Score=46.33 Aligned_cols=21 Identities=38% Similarity=0.346 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999998873
No 414
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.63 E-value=0.018 Score=53.31 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|.|+.||||||+.+.|+-.+.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 688999999999999999986553
No 415
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.63 E-value=0.035 Score=47.19 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=27.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEe
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRII 37 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~ 37 (303)
.|.+++|.+||||||.+-.++..+... +..++++
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~--g~kVli~ 62 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFA--KQHAIVF 62 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEE
Confidence 478999999999999999998877654 4556554
No 416
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.63 E-value=0.016 Score=47.11 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-|+|.|.||+||||+.+.|...+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4899999999999999887765543
No 417
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.61 E-value=0.02 Score=46.60 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|+|.|.+|+||||+.+.|...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998653
No 418
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.60 E-value=0.02 Score=46.97 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|++.|.||+||||+.+.|..
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999998875
No 419
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.60 E-value=0.019 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|.|+.||||||+.+.|+-.+.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 688999999999999999986553
No 420
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.59 E-value=0.019 Score=52.77 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|.|+.||||||+.+.|+-.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCC
Confidence 688999999999999999986553
No 421
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.59 E-value=0.02 Score=47.11 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|+|.|.+|+||||+.+.|...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999988653
No 422
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.55 E-value=0.022 Score=46.49 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|+|.|.+|+||||+.+.|...
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5899999999999999998764
No 423
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.55 E-value=0.021 Score=46.48 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 489999999999999999875
No 424
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.53 E-value=0.021 Score=47.12 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|+|.|.+|+||||+.+.|...
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999998753
No 425
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.53 E-value=0.021 Score=46.42 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=18.9
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998864
No 426
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.53 E-value=0.02 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|+.||||||+.+.|+-.+
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 68899999999999999987654
No 427
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.53 E-value=0.021 Score=46.62 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=19.2
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 589999999999999999875
No 428
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.53 E-value=0.021 Score=46.71 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 489999999999999999865
No 429
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.52 E-value=0.022 Score=46.46 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999864
No 430
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.52 E-value=0.02 Score=52.66 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|.|+.||||||+.+.|+-.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 688999999999999999986553
No 431
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.51 E-value=0.022 Score=46.53 Aligned_cols=21 Identities=33% Similarity=0.271 Sum_probs=18.7
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.+..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999988765
No 432
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=94.51 E-value=0.18 Score=44.88 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHHHcCCcEEEEEEecC-HHHHHHHHHHhh
Q 047717 64 RSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLE-EDHCRKWNKERH 123 (303)
Q Consensus 64 ~~~v~~~L~~~~~VIvD~~n~~k~~R~~l~~~ak~~~~~~~vI~l~~~-~e~~~~R~~~R~ 123 (303)
.+.+...+.+|..||+|-. ..|.+ .+ +.......+||+.+| .+++.+|+..|+
T Consensus 179 ~~~V~~~~~~gk~viLdid--~qg~~----~l-k~~~~~pi~IFI~PpS~e~L~~r~~~r~ 232 (292)
T 3tvt_A 179 VASVREVAEKGKHCILDVS--GNAIK----RL-QVAQLYPVAVFIKPKSVDSVMEMNRRMT 232 (292)
T ss_dssp HHHHHHHHHHTCEEEECCC--THHHH----HH-HHTTCCCEEEEECCSCHHHHHHTCTTSC
T ss_pred hHHHHHHHHcCCcEEEecc--chhhh----hc-ccccccceEEEEECCCHHHHHHHHhCCC
Confidence 3457777888999999973 34422 12 334445578888765 666777766554
No 433
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.51 E-value=0.022 Score=46.74 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998875
No 434
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.51 E-value=0.015 Score=46.90 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=17.9
Q ss_pred EEEEEccCCCCHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLA 22 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La 22 (303)
-|+|.|.+|+||||+.+.|.
T Consensus 20 ~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999998764
No 435
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.50 E-value=0.028 Score=56.66 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=26.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccccCCccEEEec
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKESEAKETVRIID 38 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~ 38 (303)
-++|+|+||+|||++|+.|++.+... +...+.++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~ 556 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGD--EESMIRID 556 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEe
Confidence 48999999999999999999987432 23455554
No 436
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.50 E-value=0.02 Score=47.06 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=18.8
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998764
No 437
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.49 E-value=0.022 Score=46.24 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|+|.|.+|+||||+.+.|...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998653
No 438
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.48 E-value=0.021 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
+++|.|++||||||+.+.|...+
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 57899999999999999987543
No 439
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.47 E-value=0.017 Score=53.25 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.6
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~ 24 (303)
|.-|.|.|.||+||||+.+.|...
T Consensus 1 ~~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 1 MLAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CCSEEEECCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 667899999999999999999865
No 440
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.46 E-value=0.023 Score=45.58 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=18.8
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999998864
No 441
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.46 E-value=0.018 Score=51.34 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|.|+.||||||+.+.|+-.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 688999999999999999876553
No 442
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.46 E-value=0.02 Score=46.32 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=18.7
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|++.|.+|+||||+.+.|..
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998763
No 443
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.45 E-value=0.023 Score=46.40 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.9
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 489999999999999998865
No 444
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.44 E-value=0.012 Score=52.97 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|+|+.||||||+.+.|+..+.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEEEECCCCchHHHHHHHHHcCCC
Confidence 689999999999999999876553
No 445
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.43 E-value=0.021 Score=52.66 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|.|+.||||||+.+.|+-.+.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHHcCCC
Confidence 688999999999999999986553
No 446
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.43 E-value=0.022 Score=46.31 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998863
No 447
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.42 E-value=0.022 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|++||||||+.+.|. .+
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 67899999999999999998 44
No 448
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.41 E-value=0.021 Score=46.42 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~ 23 (303)
.-|+|.|.+|+||||+.+.|..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999998754
No 449
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.40 E-value=0.022 Score=52.57 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|.|+.||||||+.+.|+-.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 688999999999999999986553
No 450
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.38 E-value=0.024 Score=46.23 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=18.9
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 489999999999999998864
No 451
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.37 E-value=0.047 Score=45.78 Aligned_cols=37 Identities=24% Similarity=0.228 Sum_probs=30.0
Q ss_pred CEEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 1 MALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
|-+.+..+-.|+||||+|..|+..+... + +|.++|-+
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~--g-~VlliD~D 37 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQ--G-ETLLIDGD 37 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTT--S-CEEEEEEC
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhc--C-CEEEEECC
Confidence 4456668999999999999999999875 5 78887743
No 452
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.37 E-value=0.024 Score=46.61 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999999864
No 453
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.35 E-value=0.025 Score=46.23 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|+|.|.+|+||||+.+.|...
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998753
No 454
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.33 E-value=0.024 Score=47.21 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|+|.|.+|+||||+.+.|...
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998753
No 455
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.33 E-value=0.025 Score=47.09 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|+|.|.+|+||||+.+.|...
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999988653
No 456
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.32 E-value=0.022 Score=46.06 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998864
No 457
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.31 E-value=0.023 Score=50.50 Aligned_cols=22 Identities=36% Similarity=0.444 Sum_probs=20.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~ 23 (303)
|-|+|+|.|||||||+.+.|..
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g 46 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVG 46 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHC
Confidence 6799999999999999999864
No 458
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.31 E-value=0.025 Score=46.70 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998864
No 459
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.29 E-value=0.015 Score=59.13 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-++|.|+||+||||+|+.|+..++.
T Consensus 513 ~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 513 GVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred eeEEECCCCCCHHHHHHHHHHHhCC
Confidence 3689999999999999999999864
No 460
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.28 E-value=0.019 Score=46.09 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998865
No 461
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.27 E-value=0.021 Score=47.18 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=18.2
Q ss_pred EEEEEccCCCCHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLA 22 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La 22 (303)
-|+|.|.||+||||+.+.|.
T Consensus 27 ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999999875
No 462
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.26 E-value=0.018 Score=54.68 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l 25 (303)
+++.|.|+.||||||+++.|+..+
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 468999999999999999998765
No 463
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.26 E-value=0.024 Score=46.77 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=18.8
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999999998863
No 464
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.24 E-value=0.027 Score=46.59 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~ 23 (303)
.-|+|.|.+|+||||+.+.|..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999998864
No 465
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.24 E-value=0.027 Score=50.22 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~ 23 (303)
..|.|.|.||+||||+.+.|..
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4689999999999999999864
No 466
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.23 E-value=0.045 Score=47.45 Aligned_cols=36 Identities=33% Similarity=0.346 Sum_probs=28.8
Q ss_pred CEEEEE-EccCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 1 MALIVI-CGQPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 1 M~LI~l-~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
|.+|.+ .|-.|+||||+|..|+..+. . +.+|.++|-
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~la-~--g~~VlliD~ 63 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLLS-K--NNKVLLIDM 63 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHHT-T--TSCEEEEEE
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHH-C--CCCEEEEEC
Confidence 345555 78899999999999999998 5 577888774
No 467
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.22 E-value=0.025 Score=52.57 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|.|+.||||||+.+.|+-.+.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 689999999999999999986543
No 468
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.19 E-value=0.02 Score=47.21 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=18.2
Q ss_pred EEEEEccCCCCHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLA 22 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La 22 (303)
-|+|.|.||+||||+.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999874
No 469
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.18 E-value=0.04 Score=53.80 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=31.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.+++++|.+|+||||+|..|+..+... +..|.++|-+
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~--G~rVLlvd~D 45 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQ--GKRVLLVSTD 45 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHC--CCcEEEEECC
Confidence 478999999999999999999998765 5678777744
No 470
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.18 E-value=0.026 Score=50.80 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEA 24 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~ 24 (303)
-|+|+|.+|+||||+|..|.++
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHhc
Confidence 4899999999999999999775
No 471
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=94.17 E-value=0.16 Score=50.72 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=21.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l 25 (303)
.-|+|.|.+|+||||++..|....
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~~~ 36 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILYYT 36 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998643
No 472
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.17 E-value=0.032 Score=49.14 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~ 23 (303)
.-|+|.|.||+||||+.+.|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 5689999999999999999864
No 473
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=94.16 E-value=0.055 Score=45.39 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=28.1
Q ss_pred EEEEEEc-cCCCCHHHHHHHHHHHHccccCCccEEEecC
Q 047717 2 ALIVICG-QPSSGKSLAATCLAEALKESEAKETVRIIDE 39 (303)
Q Consensus 2 ~LI~l~G-~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~ 39 (303)
+.|+|+| -+|+||||+|-.|+..+... +.+|.+++.
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~--G~rVll~dp 38 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAA--GYRTAGYKP 38 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHT--TCCEEEECS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEcc
Confidence 3456666 58999999999999999765 567777764
No 474
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.16 E-value=0.025 Score=46.27 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.6
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999998853
No 475
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.15 E-value=0.031 Score=47.24 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~ 23 (303)
+-|+|.|.+|+||||+.+.|..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998754
No 476
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.15 E-value=0.028 Score=46.60 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=19.2
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999998875
No 477
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.14 E-value=0.018 Score=52.75 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALK 26 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~ 26 (303)
++.|.|+.||||||+.+.|+-.+.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCccHHHHHHHHHcCCC
Confidence 688999999999999999986543
No 478
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=94.13 E-value=0.027 Score=54.62 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~ 23 (303)
.+|+|+|++|+||||+|.+++.
T Consensus 148 ~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEcCCCCCHHHHHHHHHh
Confidence 5899999999999999999864
No 479
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=94.13 E-value=0.052 Score=46.57 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=29.1
Q ss_pred EEEEE-EccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 2 ALIVI-CGQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 2 ~LI~l-~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
.+|.+ .+-.|+||||+|..|+..|... +..|.++|-+
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~--g~~VlliD~D 40 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQK--GKKTVVIDFA 40 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhC--CCcEEEEECC
Confidence 45555 6678899999999999999865 5678887744
No 480
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=94.13 E-value=0.21 Score=46.22 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
-|+++|.+++||||+...|...+
T Consensus 13 ~I~iiG~~~~GKSTLi~~L~~~~ 35 (405)
T 2c78_A 13 NVGTIGHVDHGKTTLTAALTYVA 35 (405)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHhhh
Confidence 58999999999999999998753
No 481
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.13 E-value=0.025 Score=46.38 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=18.2
Q ss_pred EEEEEccCCCCHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLA 22 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La 22 (303)
-|+|.|.+|+||||+.+.|.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999874
No 482
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=94.12 E-value=0.097 Score=48.12 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.8
Q ss_pred CEEEEEEccCCCCHHHHHHHHH
Q 047717 1 MALIVICGQPSSGKSLAATCLA 22 (303)
Q Consensus 1 M~LI~l~G~PGSGKSTlA~~La 22 (303)
|+.|++.|.+++||||+...|.
T Consensus 21 m~~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 21 MANVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEEEESTTSSHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999876
No 483
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.11 E-value=0.027 Score=56.60 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 047717 3 LIVICGQPSSGKSLAATCLAEALKE 27 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l~~ 27 (303)
-++|.|+||+|||++|+.|++.++.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~ 514 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGI 514 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcC
Confidence 4899999999999999999999853
No 484
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.08 E-value=0.03 Score=46.51 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~ 23 (303)
.-|+|.|.+|+||||+.+.|..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999998865
No 485
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.08 E-value=0.032 Score=45.52 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.7
Q ss_pred EEEEEEccCCCCHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLA 22 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La 22 (303)
+-|+|.|.+|+||||+.+.|.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999875
No 486
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.07 E-value=0.03 Score=46.20 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998875
No 487
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.06 E-value=0.03 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~~l 25 (303)
..+.|.|.+||||||+.+.|....
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999998643
No 488
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.04 E-value=0.027 Score=54.26 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=0.0
Q ss_pred EEEEEccCCCCHHHHHHH--HH
Q 047717 3 LIVICGQPSSGKSLAATC--LA 22 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~--La 22 (303)
+++|.|++||||||+++. ++
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~ 62 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYN 62 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
No 489
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.04 E-value=0.029 Score=46.01 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=18.8
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998863
No 490
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.03 E-value=1.4 Score=41.80 Aligned_cols=126 Identities=13% Similarity=0.171 Sum_probs=62.7
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccccCCccEEEecCCccCCCccccCCCchhhHHHHHHHHHHHHH--hcCCCCEEEEcC
Q 047717 4 IVICGQPSSGKSLAATCLAEALKESEAKETVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDR--SVSKDNIIIVDS 81 (303)
Q Consensus 4 I~l~G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~~~~~~~~~~y~~~~~e~~~r~~l~~~v~~--~L~~~~~VIvD~ 81 (303)
++|.|.||+||||+++.|+......... +..+. .+..+ ....+ .+...+.. .++ ..+||+-.
T Consensus 154 ~~i~G~sGvGKTtL~~~l~~~~~~~~~~--i~V~~----~iGer--------ttev~-el~~~l~~~~~l~-~tvvv~~~ 217 (473)
T 1sky_E 154 IGLFGGAGVGKTVLIQELIHNIAQEHGG--ISVFA----GVGER--------TREGN-DLYHEMKDSGVIS-KTAMVFGQ 217 (473)
T ss_dssp EEEECCSSSCHHHHHHHHHHHHHHHTCC--CEEEE----EESSC--------HHHHH-HHHHHHHHTSGGG-GEEEEEEC
T ss_pred EEEECCCCCCccHHHHHHHhhhhhccCc--EEEEe----eeccC--------chHHH-HHHHHhhhcCCcc-eeEEEEEc
Confidence 6889999999999999998766532111 11111 01010 11222 11111211 222 24566666
Q ss_pred CCCchHHHHHH-------HHHHHH-cCCcEEEEEEecCH--HHHHHHHHHhhhc--CCCCCCHHHHHHHHHHhcCCC
Q 047717 82 LNSIKGYRYEL-------WCLARA-AGIRYCVLYCDLEE--DHCRKWNKERHEK--GEAAYDDKIFEDLVRRFEKPD 146 (303)
Q Consensus 82 ~n~~k~~R~~l-------~~~ak~-~~~~~~vI~l~~~~--e~~~~R~~~R~~~--~~~~~~~e~~~~l~~r~E~P~ 146 (303)
.+-..++|+.. ....+. .|. ..++++|-=- ..+.+-......+ +...|++.++..+..-||...
T Consensus 218 ~~d~pg~r~~~~~~~ltiAEyFrd~~G~-~VLl~~D~itR~a~A~reis~~~ge~P~~~GYp~~~~~~l~~l~ERa~ 293 (473)
T 1sky_E 218 MNEPPGARMRVALTGLTMAEYFRDEQGQ-DGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERIT 293 (473)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHSCC-EEEEEEECTHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCC-cEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHHhc
Confidence 66777887722 222233 344 3444454321 1222222222111 113588888988888888754
No 491
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.02 E-value=0.017 Score=46.58 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=9.3
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998864
No 492
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.01 E-value=0.031 Score=46.31 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.9
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.+..
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999999998874
No 493
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.99 E-value=0.029 Score=50.04 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=19.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAEAL 25 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~~l 25 (303)
++.|.|++||||||+.+.|+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 67899999999999999886543
No 494
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.99 E-value=0.029 Score=48.42 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=18.5
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.||+||||+.+.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 489999999999999998753
No 495
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=93.98 E-value=0.062 Score=45.97 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=29.0
Q ss_pred CEEEEEEcc-CCCCHHHHHHHHHHHHccccCCccEEEe
Q 047717 1 MALIVICGQ-PSSGKSLAATCLAEALKESEAKETVRII 37 (303)
Q Consensus 1 M~LI~l~G~-PGSGKSTlA~~La~~l~~~~~~~~v~~~ 37 (303)
|+-|+|+|. +|+|||+++-.|+..|...+ ..|..+
T Consensus 4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G--~~V~~~ 39 (228)
T 3of5_A 4 MKKFFIIGTDTEVGKTYISTKLIEVCEHQN--IKSLCL 39 (228)
T ss_dssp CEEEEEEESSSSSCHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHCC--CeeEEe
Confidence 788999998 99999999999999998763 444443
No 496
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.98 E-value=0.032 Score=46.14 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=18.9
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|.|.+|+||||+.+.|..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 489999999999999998864
No 497
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.95 E-value=0.076 Score=45.02 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=29.7
Q ss_pred CEEEEEE-ccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 1 MALIVIC-GQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 1 M~LI~l~-G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
|.+|.++ +-.|+||||+|..|+..+... .+.+|.++|-+
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~-~g~~VlliD~D 43 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQE-PDIHVLAVDIS 43 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTS-TTCCEEEEECC
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhC-cCCCEEEEECC
Confidence 4555555 668999999999999999764 15678888754
No 498
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.95 E-value=0.022 Score=51.22 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=18.8
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 047717 3 LIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 3 LI~l~G~PGSGKSTlA~~La~ 23 (303)
-|+|+|.+|+||||+|-.|.+
T Consensus 149 gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 149 GVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998765
No 499
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=93.94 E-value=0.047 Score=48.10 Aligned_cols=36 Identities=33% Similarity=0.357 Sum_probs=28.7
Q ss_pred EEEEE-ccCCCCHHHHHHHHHHHHccccCCccEEEecCC
Q 047717 3 LIVIC-GQPSSGKSLAATCLAEALKESEAKETVRIIDEA 40 (303)
Q Consensus 3 LI~l~-G~PGSGKSTlA~~La~~l~~~~~~~~v~~~~~~ 40 (303)
+|.|+ +-.|+||||+|..|+..|... +..|.++|-+
T Consensus 6 vI~v~s~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D 42 (286)
T 2xj4_A 6 VIVVGNEKGGAGKSTIAVHLVTALLYG--GAKVAVIDLD 42 (286)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHC--CCcEEEEECC
Confidence 56554 678999999999999999765 5678887744
No 500
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.94 E-value=0.031 Score=51.42 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 047717 2 ALIVICGQPSSGKSLAATCLAE 23 (303)
Q Consensus 2 ~LI~l~G~PGSGKSTlA~~La~ 23 (303)
+.|+|.|.|||||||+.+.|..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTG 201 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHC
Confidence 4689999999999999999874
Done!