BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047720
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HG2|A Chain A, The Structure Of A Putative Type Ii Methyltransferase From
Anaeromyxobacter Dehalogenans.
pdb|4HG2|B Chain B, The Structure Of A Putative Type Ii Methyltransferase From
Anaeromyxobacter Dehalogenans
Length = 257
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 38/93 (40%)
Query: 5 FNKQAKLYLDARPTYPREWYSMLASLTTHHLLAWDAGMGNGQAALGVRFEGQPLELDMPK 64
F A Y RP YPR + L + A D G G+GQA+LG+ + + P
Sbjct: 11 FTPVADAYRAFRPRYPRALFRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPG 70
Query: 65 EVSFEGFLRMLRSFSAVNTAVEQGVDLLSEKVV 97
E LR R AV A + G+ S V
Sbjct: 71 EAQIRQALRHPRVTYAVAPAEDTGLPPASVDVA 103
>pdb|3AJV|B Chain B, Splicing Endonuclease From Aeropyrum Pernix
pdb|3AJV|D Chain D, Splicing Endonuclease From Aeropyrum Pernix
Length = 186
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 53 FEGQPLELDMPKEVSFEGFLRM 74
+ GQPL+++ P+ FEG LR+
Sbjct: 35 YYGQPLDVEKPRGADFEGPLRL 56
>pdb|3P1Z|B Chain B, Crystal Structure Of The Aperopyrum Pernix Rna Splicing
Endonuclease
pdb|3P1Z|D Chain D, Crystal Structure Of The Aperopyrum Pernix Rna Splicing
Endonuclease
pdb|3P1Z|F Chain F, Crystal Structure Of The Aperopyrum Pernix Rna Splicing
Endonuclease
pdb|3P1Z|H Chain H, Crystal Structure Of The Aperopyrum Pernix Rna Splicing
Endonuclease
pdb|3P1Z|J Chain J, Crystal Structure Of The Aperopyrum Pernix Rna Splicing
Endonuclease
pdb|3P1Z|L Chain L, Crystal Structure Of The Aperopyrum Pernix Rna Splicing
Endonuclease
Length = 186
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 53 FEGQPLELDMPKEVSFEGFLRM 74
+ GQPL+++ P+ FEG LR+
Sbjct: 35 YYGQPLDVEKPRGADFEGPLRL 56
>pdb|2K77|A Chain A, Nmr Solution Structure Of The Bacillus Subtilis Clpc N-
Domain
Length = 146
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 71 FLRMLRSFSAVNTAVEQGVDLLSEKVVKELETAWG-GSELVRTIIY 115
L ++R + Q + L SEK+ KE+E+ G G E+ +TI Y
Sbjct: 36 LLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHY 81
>pdb|2Y1R|A Chain A, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|B Chain B, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|C Chain C, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|D Chain D, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|E Chain E, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|F Chain F, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|G Chain G, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|H Chain H, Structure Of Meca121 & Clpc N-Domain Complex
Length = 149
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 71 FLRMLRSFSAVNTAVEQGVDLLSEKVVKELETAWG-GSELVRTIIY 115
L ++R + Q + L SEK+ KE+E+ G G E+ +TI Y
Sbjct: 35 LLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHY 80
>pdb|1VI7|A Chain A, Crystal Structure Of An Hypothetical Protein
Length = 217
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 33 HHLLAWDAGMGNGQAALGVRFEGQP 57
HH +AW AG + LG +G+P
Sbjct: 54 HHCVAWVAGAPDDSQQLGFSDDGEP 78
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 71 FLRMLRSFSAVNTAVEQGVDLLSEKVVKELETAWG-GSELVRTIIY 115
L ++R + Q + L SEK+ KE+E+ G G E+ +TI Y
Sbjct: 35 LLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHY 80
>pdb|3CQY|A Chain A, Crystal Structure Of A Functionally Unknown Protein
(So_1313) From Shewanella Oneidensis Mr-1
pdb|3CQY|B Chain B, Crystal Structure Of A Functionally Unknown Protein
(So_1313) From Shewanella Oneidensis Mr-1
Length = 370
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 84 AVEQGVDLLSEKVVKELETAWGGSELVRTIIYKTFMLVGK 123
A E G+D++++ K++ G+ LV +TF VGK
Sbjct: 123 ATETGIDVIADFRRKDIALGGQGAPLVPAFHQQTFAQVGK 162
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 71 FLRMLRSFSAVNTAVEQGVDLLSEKVVKELETAWG-GSELVRTIIY 115
L ++R + Q + L SEK+ KE+E+ G G E+ +TI Y
Sbjct: 35 LLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHY 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,705,517
Number of Sequences: 62578
Number of extensions: 138848
Number of successful extensions: 249
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 10
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)