BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047720
(126 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55EX9|Y8948_DICDI Putative methyltransferase DDB_G0268948 OS=Dictyostelium
discoideum GN=DDB_G0268948 PE=1 SV=2
Length = 263
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 5 FNKQAKLYLDARPTYPREWYSMLAS-LTTHHLLAWDAGMGNGQAAL 49
F +K Y + RPTY E YS++ S LA D G G+GQA +
Sbjct: 15 FGSISKSYKNFRPTYNDELYSIIDSHCDEKRDLAIDIGAGSGQATV 60
>sp|A4FWS3|SYFB_METM5 Phenylalanine--tRNA ligase beta subunit OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=pheT PE=3
SV=1
Length = 554
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 44 NGQAALGVRFEGQPLELDMPKEVSFEGFLRMLRSFSAVNTAVEQGVDLLSE--KVVKELE 101
NG+ V+F P D P +S EG R R F + T +++ L S+ +V+E E
Sbjct: 45 NGKKQKMVQFSINP---DRPDYLSVEGLARGFRGFMGITTGIQEFEVLNSDIKVIVEENE 101
Query: 102 T-AWGGSELVRTIIYKTFML 120
T + LV+ ++ F+L
Sbjct: 102 TRPYVAFALVKNVLMDEFVL 121
>sp|Q914H6|Y056_SIFVH Uncharacterized protein 56 OS=Sulfolobus islandicus filamentous
virus (isolate Iceland/Hveragerdi) GN=SIFV0056 PE=4 SV=1
Length = 591
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 68 FEGFLRMLRSFSAVNTAVEQGVDLLSEKVVKELETAWGGSELVRTIIYKTFM 119
++G R+ F+A+ +E+G++ L V+ L W + + IY + +
Sbjct: 74 WDGMQRIASGFTAIMAPIERGLETLGTTVINALTVVWNDIKAFASAIYNSIV 125
>sp|Q86117|POLG_RHDVS Genome polyprotein OS=Rabbit hemorrhagic disease virus (strain SD)
GN=ORF1 PE=3 SV=1
Length = 2344
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 5 FNKQAKLYLDARPTYPREWYSMLASLT 31
F K +L LD RP P WY+ L ++T
Sbjct: 224 FMKNLRLALDNRPANPVTWYTKLGNIT 250
>sp|P27410|POLG_RHDVF Genome polyprotein OS=Rabbit hemorrhagic disease virus (strain
Rabbit/Germany/FRG/1989) GN=ORF1 PE=1 SV=1
Length = 2344
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 5 FNKQAKLYLDARPTYPREWYSMLASLT 31
F K +L LD RP P WY+ L ++T
Sbjct: 224 FMKNLRLALDNRPANPVTWYTKLGNIT 250
>sp|Q89273|POLG_RHDVB Genome polyprotein OS=Rabbit hemorrhagic disease virus (strain
BS89) GN=ORF1 PE=1 SV=1
Length = 2344
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 5 FNKQAKLYLDARPTYPREWYSMLASLT 31
F K +L LD RP P WY+ L ++T
Sbjct: 224 FMKNLRLALDNRPANPVTWYTKLGNIT 250
>sp|Q86119|POLG_RHDVA Genome polyprotein OS=Rabbit hemorrhagic disease virus (strain
AST89) GN=ORF1 PE=1 SV=2
Length = 2344
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 5 FNKQAKLYLDARPTYPREWYSMLASLT 31
F K +L LD RP P WY+ L ++T
Sbjct: 224 FMKNLRLALDNRPANPVTWYTKLGNIT 250
>sp|F6UF99|TM237_XENTR Transmembrane protein 237 OS=Xenopus tropicalis GN=tmem237 PE=3
SV=1
Length = 387
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 7 KQAKLYLDARPTYPREWYSMLASLTTHHLL 36
+Q ++LD +PT W SM SLT HH+
Sbjct: 179 EQTDVFLDVKPT----WTSMDVSLTAHHIF 204
>sp|Q1WSC1|TRUA_LACS1 tRNA pseudouridine synthase A OS=Lactobacillus salivarius (strain
UCC118) GN=truA PE=3 SV=1
Length = 256
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 43 GNGQAALGVRFEGQPLELDMPKEVSFEGFLRMLRSFSAVNTAV 85
G+G+ GV GQ + D P +S +G LR L S ++ V
Sbjct: 50 GSGRTDSGVHALGQVVHFDFPHPISAKGMLRGLNSMLPLDCEV 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,770,170
Number of Sequences: 539616
Number of extensions: 1699538
Number of successful extensions: 3812
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3804
Number of HSP's gapped (non-prelim): 14
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)