Query 047720
Match_columns 126
No_of_seqs 231 out of 840
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3010 Methyltransferase [Gen 100.0 1.6E-31 3.5E-36 202.5 10.6 125 1-125 1-261 (261)
2 PRK05785 hypothetical protein; 98.1 2.1E-06 4.5E-11 64.9 3.3 53 2-54 12-72 (226)
3 PF13489 Methyltransf_23: Meth 98.1 3.2E-06 7E-11 58.9 3.6 44 12-55 1-44 (161)
4 PRK10258 biotin biosynthesis p 97.9 9.5E-06 2.1E-10 61.5 3.3 50 2-52 10-61 (251)
5 PLN02233 ubiquinone biosynthes 97.6 7.9E-05 1.7E-09 57.4 4.3 53 2-54 36-94 (261)
6 TIGR02752 MenG_heptapren 2-hep 97.6 5.8E-05 1.3E-09 56.3 3.4 52 2-53 8-65 (231)
7 PRK15451 tRNA cmo(5)U34 methyl 97.6 9.1E-05 2E-09 56.4 4.3 49 5-53 20-76 (247)
8 PRK01683 trans-aconitate 2-met 97.5 5.9E-05 1.3E-09 57.3 2.6 45 8-53 5-51 (258)
9 TIGR02072 BioC biotin biosynth 97.5 5.6E-05 1.2E-09 55.8 1.7 49 4-53 1-54 (240)
10 PRK11036 putative S-adenosyl-L 97.5 0.00019 4.1E-09 54.7 4.6 53 3-55 4-66 (255)
11 PF01209 Ubie_methyltran: ubiE 97.3 8.6E-05 1.9E-09 56.6 1.5 53 2-54 10-68 (233)
12 TIGR00138 gidB 16S rRNA methyl 97.3 0.00027 6E-09 51.7 4.0 43 9-52 12-61 (181)
13 PRK14103 trans-aconitate 2-met 97.3 0.00017 3.7E-09 55.0 3.0 40 13-54 11-50 (255)
14 PF12847 Methyltransf_18: Meth 97.3 0.00012 2.6E-09 48.2 1.8 21 33-53 1-21 (112)
15 PRK00216 ubiE ubiquinone/menaq 97.3 0.00033 7.2E-09 51.8 4.4 52 3-54 15-72 (239)
16 PRK06202 hypothetical protein; 97.3 0.00015 3.3E-09 54.4 2.4 21 32-52 59-79 (232)
17 COG2226 UbiE Methylase involve 97.2 0.00045 9.8E-09 53.0 4.4 51 2-52 14-70 (238)
18 TIGR01934 MenG_MenH_UbiE ubiqu 97.2 0.00049 1.1E-08 50.4 3.8 54 2-55 2-61 (223)
19 COG2264 PrmA Ribosomal protein 97.2 0.00029 6.3E-09 55.8 2.7 32 24-55 153-184 (300)
20 PRK11207 tellurite resistance 97.1 0.00049 1.1E-08 50.7 3.6 40 15-55 13-52 (197)
21 TIGR00740 methyltransferase, p 97.1 0.00054 1.2E-08 51.6 3.9 49 5-54 17-74 (239)
22 PF07021 MetW: Methionine bios 97.1 0.00034 7.4E-09 52.1 2.5 31 24-54 4-34 (193)
23 PRK00274 ksgA 16S ribosomal RN 97.1 0.00044 9.5E-09 53.6 3.2 36 20-55 27-64 (272)
24 TIGR03587 Pse_Me-ase pseudamin 97.1 0.00042 9.2E-09 51.6 3.0 26 29-54 39-64 (204)
25 PF07757 AdoMet_MTase: Predict 97.1 0.00031 6.7E-09 47.9 2.0 32 33-64 58-90 (112)
26 PRK00107 gidB 16S rRNA methylt 97.1 0.00058 1.3E-08 50.4 3.6 43 10-52 15-64 (187)
27 PF06325 PrmA: Ribosomal prote 97.1 0.00049 1.1E-08 54.3 3.1 32 24-55 152-183 (295)
28 TIGR02081 metW methionine bios 97.1 0.0005 1.1E-08 50.3 2.9 30 25-54 5-34 (194)
29 TIGR02469 CbiT precorrin-6Y C5 97.0 0.00086 1.9E-08 44.5 3.7 36 20-55 4-41 (124)
30 PLN02585 magnesium protoporphy 97.0 0.00072 1.6E-08 53.8 3.8 39 16-55 123-166 (315)
31 PRK11188 rrmJ 23S rRNA methylt 97.0 0.00044 9.6E-09 51.7 2.4 24 31-54 49-72 (209)
32 COG4106 Tam Trans-aconitate me 96.9 0.00056 1.2E-08 52.2 2.4 20 33-52 30-49 (257)
33 PF13847 Methyltransf_31: Meth 96.9 0.00043 9.3E-09 48.6 1.7 22 33-54 3-24 (152)
34 TIGR03840 TMPT_Se_Te thiopurin 96.9 0.0011 2.4E-08 49.8 4.0 37 20-56 19-57 (213)
35 PLN02396 hexaprenyldihydroxybe 96.9 0.00068 1.5E-08 54.1 2.9 22 34-55 132-153 (322)
36 PRK08287 cobalt-precorrin-6Y C 96.9 0.0013 2.8E-08 47.8 3.9 38 15-52 11-50 (187)
37 TIGR00477 tehB tellurite resis 96.9 0.00074 1.6E-08 49.7 2.5 23 33-55 30-52 (195)
38 PRK00517 prmA ribosomal protei 96.8 0.001 2.2E-08 50.8 3.2 31 23-53 109-139 (250)
39 PRK07580 Mg-protoporphyrin IX 96.8 0.00088 1.9E-08 49.6 2.8 22 33-54 63-84 (230)
40 TIGR02021 BchM-ChlM magnesium 96.8 0.0011 2.4E-08 49.3 3.1 20 33-52 55-74 (219)
41 TIGR00755 ksgA dimethyladenosi 96.8 0.0013 2.8E-08 50.3 3.5 35 21-55 15-51 (253)
42 PRK13944 protein-L-isoaspartat 96.8 0.0013 2.7E-08 48.9 3.4 33 22-54 59-93 (205)
43 TIGR03438 probable methyltrans 96.8 0.0012 2.5E-08 51.9 3.3 29 26-54 56-84 (301)
44 PRK07402 precorrin-6B methylas 96.8 0.0017 3.6E-08 47.6 3.9 37 16-52 21-59 (196)
45 PRK14896 ksgA 16S ribosomal RN 96.8 0.0012 2.5E-08 50.8 3.1 36 20-55 14-51 (258)
46 PF05175 MTS: Methyltransferas 96.8 0.0013 2.9E-08 47.3 3.2 23 33-55 31-53 (170)
47 TIGR00080 pimt protein-L-isoas 96.8 0.0014 3E-08 48.8 3.3 33 23-55 65-99 (215)
48 KOG1270 Methyltransferases [Co 96.8 0.00079 1.7E-08 52.5 1.9 21 35-55 91-111 (282)
49 PRK14967 putative methyltransf 96.8 0.0014 3.1E-08 49.0 3.3 41 15-55 16-58 (223)
50 PRK00121 trmB tRNA (guanine-N( 96.7 0.00045 9.7E-09 51.2 0.5 22 33-54 40-61 (202)
51 KOG1541 Predicted protein carb 96.7 0.00082 1.8E-08 51.6 1.8 23 33-55 50-72 (270)
52 smart00650 rADc Ribosomal RNA 96.7 0.0011 2.4E-08 47.5 2.3 31 25-55 3-35 (169)
53 COG2242 CobL Precorrin-6B meth 96.7 0.0017 3.8E-08 48.2 3.3 21 32-52 33-53 (187)
54 PRK15068 tRNA mo(5)U34 methylt 96.7 0.0014 3E-08 52.2 2.9 30 26-55 113-144 (322)
55 PRK14966 unknown domain/N5-glu 96.7 0.0014 3E-08 54.2 3.1 32 21-52 239-270 (423)
56 PRK12335 tellurite resistance 96.7 0.0015 3.2E-08 50.9 3.0 34 20-55 109-142 (287)
57 TIGR00406 prmA ribosomal prote 96.6 0.0018 3.9E-08 50.5 3.0 29 27-55 153-181 (288)
58 PRK04148 hypothetical protein; 96.6 0.0023 5E-08 45.1 3.2 35 22-56 3-40 (134)
59 COG4976 Predicted methyltransf 96.6 0.0021 4.5E-08 49.7 3.1 20 33-52 125-144 (287)
60 PF03848 TehB: Tellurite resis 96.6 0.002 4.3E-08 48.0 3.0 24 33-56 30-53 (192)
61 PRK11088 rrmA 23S rRNA methylt 96.6 0.0023 4.9E-08 49.4 3.4 21 33-53 85-105 (272)
62 PRK13942 protein-L-isoaspartat 96.6 0.0024 5.1E-08 47.7 3.3 34 21-54 62-97 (212)
63 TIGR00091 tRNA (guanine-N(7)-) 96.5 0.0012 2.5E-08 48.6 1.5 23 33-55 16-38 (194)
64 COG2227 UbiG 2-polyprenyl-3-me 96.5 0.0016 3.4E-08 50.1 2.3 23 33-55 59-81 (243)
65 KOG1271 Methyltransferases [Ge 96.5 0.0021 4.6E-08 48.1 2.8 34 22-55 50-89 (227)
66 TIGR00452 methyltransferase, p 96.5 0.0024 5.1E-08 50.9 3.2 23 33-55 121-143 (314)
67 PRK00312 pcm protein-L-isoaspa 96.5 0.0028 6.1E-08 46.9 3.4 36 20-55 63-100 (212)
68 TIGR03534 RF_mod_PrmC protein- 96.5 0.0027 5.8E-08 47.6 3.2 33 21-53 74-107 (251)
69 TIGR00438 rrmJ cell division p 96.5 0.0018 3.8E-08 47.2 2.1 24 31-54 30-53 (188)
70 COG2263 Predicted RNA methylas 96.4 0.0024 5.2E-08 47.7 2.6 33 20-52 27-64 (198)
71 PRK04266 fibrillarin; Provisio 96.4 0.0023 5E-08 48.6 2.5 23 32-54 71-93 (226)
72 PRK06922 hypothetical protein; 96.4 0.0014 3E-08 56.9 1.4 49 3-52 381-437 (677)
73 PLN02244 tocopherol O-methyltr 96.4 0.0032 7E-08 50.3 3.4 21 33-53 118-138 (340)
74 PRK08317 hypothetical protein; 96.4 0.004 8.7E-08 45.7 3.5 29 24-52 8-38 (241)
75 PF13649 Methyltransf_25: Meth 96.3 0.0015 3.2E-08 42.7 0.9 19 37-55 1-19 (101)
76 TIGR00478 tly hemolysin TlyA f 96.3 0.0021 4.5E-08 49.0 1.8 23 33-55 75-97 (228)
77 PF08242 Methyltransf_12: Meth 96.3 0.0018 3.8E-08 42.0 1.2 17 38-54 1-17 (99)
78 PTZ00098 phosphoethanolamine N 96.3 0.0044 9.6E-08 47.7 3.6 21 32-52 51-71 (263)
79 PLN02490 MPBQ/MSBQ methyltrans 96.3 0.0025 5.3E-08 51.3 2.2 49 5-53 80-133 (340)
80 PTZ00338 dimethyladenosine tra 96.2 0.0041 9E-08 49.0 3.1 35 21-55 22-58 (294)
81 PRK10909 rsmD 16S rRNA m(2)G96 96.2 0.0052 1.1E-07 45.9 3.4 37 15-52 33-72 (199)
82 TIGR00536 hemK_fam HemK family 96.1 0.005 1.1E-07 47.9 3.2 33 20-52 98-133 (284)
83 COG2890 HemK Methylase of poly 96.1 0.0044 9.4E-08 48.5 2.7 39 17-55 92-132 (280)
84 PRK15001 SAM-dependent 23S rib 96.1 0.004 8.7E-08 50.8 2.5 29 26-54 219-249 (378)
85 PF00398 RrnaAD: Ribosomal RNA 96.1 0.014 3E-07 44.9 5.3 36 20-55 15-52 (262)
86 PF08241 Methyltransf_11: Meth 96.1 0.0025 5.5E-08 40.0 0.9 17 38-54 1-17 (95)
87 PF06080 DUF938: Protein of un 96.0 0.0061 1.3E-07 45.9 3.0 31 22-52 13-44 (204)
88 TIGR01983 UbiG ubiquinone bios 96.0 0.0056 1.2E-07 45.2 2.7 35 20-54 26-66 (224)
89 PRK01544 bifunctional N5-gluta 96.0 0.0062 1.3E-07 51.3 3.1 19 35-53 140-158 (506)
90 PRK11705 cyclopropane fatty ac 96.0 0.0071 1.5E-07 49.3 3.3 29 26-54 158-188 (383)
91 TIGR03704 PrmC_rel_meth putati 95.9 0.0072 1.6E-07 46.4 3.1 38 17-54 66-107 (251)
92 PHA03411 putative methyltransf 95.9 0.0067 1.5E-07 47.7 2.9 34 20-54 51-85 (279)
93 PRK03522 rumB 23S rRNA methylu 95.9 0.0063 1.4E-07 48.0 2.8 34 22-55 160-195 (315)
94 PHA03412 putative methyltransf 95.9 0.0054 1.2E-07 47.3 2.3 35 20-54 36-70 (241)
95 PF02353 CMAS: Mycolic acid cy 95.9 0.0077 1.7E-07 47.0 3.2 28 25-52 52-81 (273)
96 PF01135 PCMT: Protein-L-isoas 95.9 0.0088 1.9E-07 45.0 3.3 34 22-55 59-94 (209)
97 PRK13168 rumA 23S rRNA m(5)U19 95.9 0.0075 1.6E-07 49.8 3.2 35 21-55 283-319 (443)
98 PRK09328 N5-glutamine S-adenos 95.9 0.0086 1.9E-07 45.6 3.3 34 21-54 94-129 (275)
99 PRK00377 cbiT cobalt-precorrin 95.8 0.01 2.2E-07 43.6 3.4 21 32-52 39-59 (198)
100 TIGR02716 C20_methyl_CrtF C-20 95.8 0.01 2.2E-07 46.4 3.5 24 32-55 148-171 (306)
101 TIGR03533 L3_gln_methyl protei 95.7 0.012 2.6E-07 45.9 3.4 34 21-54 106-142 (284)
102 TIGR00095 RNA methyltransferas 95.6 0.021 4.6E-07 42.0 4.4 24 33-56 49-72 (189)
103 PRK11805 N5-glutamine S-adenos 95.6 0.012 2.5E-07 46.6 3.1 20 35-54 135-154 (307)
104 TIGR00537 hemK_rel_arch HemK-r 95.6 0.0071 1.5E-07 43.6 1.7 23 33-55 19-41 (179)
105 PRK13255 thiopurine S-methyltr 95.5 0.014 3E-07 44.0 3.0 36 21-56 24-60 (218)
106 PRK14968 putative methyltransf 95.5 0.012 2.5E-07 42.0 2.5 23 32-54 22-44 (188)
107 PRK13943 protein-L-isoaspartat 95.4 0.015 3.3E-07 46.4 3.3 35 21-55 66-102 (322)
108 COG2813 RsmC 16S RNA G1207 met 95.4 0.016 3.4E-07 46.0 3.2 21 35-55 160-180 (300)
109 PRK09489 rsmC 16S ribosomal RN 95.3 0.012 2.7E-07 47.2 2.5 21 34-54 197-217 (342)
110 PRK14121 tRNA (guanine-N(7)-)- 95.3 0.012 2.6E-07 48.3 2.4 23 33-55 122-144 (390)
111 PLN02336 phosphoethanolamine N 95.3 0.012 2.5E-07 48.7 2.4 22 32-53 265-286 (475)
112 PLN02336 phosphoethanolamine N 95.3 0.014 2.9E-07 48.3 2.7 22 33-54 37-58 (475)
113 TIGR02085 meth_trns_rumB 23S r 95.2 0.016 3.5E-07 46.9 2.7 33 23-55 221-255 (374)
114 KOG2904 Predicted methyltransf 95.1 0.023 4.9E-07 45.0 3.2 36 20-55 130-170 (328)
115 TIGR00479 rumA 23S rRNA (uraci 95.1 0.014 2.9E-07 47.9 2.0 39 17-55 274-314 (431)
116 PRK05134 bifunctional 3-demeth 95.0 0.045 9.7E-07 40.8 4.7 31 24-54 37-69 (233)
117 PF08003 Methyltransf_9: Prote 95.0 0.021 4.5E-07 45.6 2.9 32 25-56 105-138 (315)
118 COG2230 Cfa Cyclopropane fatty 95.0 0.019 4.2E-07 45.2 2.6 27 26-52 63-91 (283)
119 smart00138 MeTrc Methyltransfe 95.0 0.0094 2E-07 46.1 0.8 21 34-54 100-124 (264)
120 smart00828 PKS_MT Methyltransf 95.0 0.013 2.9E-07 43.3 1.6 19 36-54 2-20 (224)
121 COG0030 KsgA Dimethyladenosine 94.9 0.033 7.1E-07 43.4 3.6 34 22-55 17-52 (259)
122 KOG1499 Protein arginine N-met 94.9 0.015 3.2E-07 47.0 1.7 20 33-52 60-79 (346)
123 cd02440 AdoMet_MTases S-adenos 94.8 0.014 3.1E-07 36.0 1.2 18 36-53 1-18 (107)
124 COG4123 Predicted O-methyltran 94.8 0.027 5.8E-07 43.6 2.9 20 33-52 44-63 (248)
125 TIGR02143 trmA_only tRNA (urac 94.8 0.024 5.2E-07 45.6 2.8 34 21-54 184-218 (353)
126 PRK05031 tRNA (uracil-5-)-meth 94.8 0.026 5.6E-07 45.6 2.8 34 21-54 193-227 (362)
127 PRK11873 arsM arsenite S-adeno 94.6 0.022 4.7E-07 43.6 2.0 21 32-52 76-96 (272)
128 KOG3191 Predicted N6-DNA-methy 94.5 0.049 1.1E-06 40.7 3.6 44 34-77 44-87 (209)
129 PF05185 PRMT5: PRMT5 arginine 94.5 0.05 1.1E-06 45.4 3.9 45 4-52 155-205 (448)
130 COG2518 Pcm Protein-L-isoaspar 94.3 0.041 8.9E-07 41.6 2.8 32 24-55 61-94 (209)
131 KOG0820 Ribosomal RNA adenine 94.1 0.057 1.2E-06 42.7 3.3 35 21-55 44-80 (315)
132 PF13659 Methyltransf_26: Meth 94.0 0.028 6.2E-07 37.0 1.4 21 35-55 2-22 (117)
133 PF13679 Methyltransf_32: Meth 94.0 0.044 9.5E-07 38.2 2.3 21 33-53 25-45 (141)
134 PF10294 Methyltransf_16: Puta 93.9 0.047 1E-06 39.5 2.5 22 33-54 45-66 (173)
135 KOG4300 Predicted methyltransf 93.8 0.04 8.8E-07 42.0 2.0 29 19-47 60-90 (252)
136 PF08704 GCD14: tRNA methyltra 93.7 0.063 1.4E-06 41.5 3.0 44 9-52 10-59 (247)
137 PF02390 Methyltransf_4: Putat 93.7 0.032 7E-07 41.3 1.3 22 34-55 18-39 (195)
138 PF03141 Methyltransf_29: Puta 93.7 0.05 1.1E-06 45.9 2.5 20 33-52 117-136 (506)
139 TIGR01177 conserved hypothetic 93.5 0.078 1.7E-06 42.0 3.2 33 21-53 168-202 (329)
140 PRK00811 spermidine synthase; 93.4 0.065 1.4E-06 41.8 2.6 23 32-54 75-97 (283)
141 PF08123 DOT1: Histone methyla 93.4 0.094 2E-06 39.3 3.3 30 23-52 30-61 (205)
142 PTZ00146 fibrillarin; Provisio 93.2 0.056 1.2E-06 42.8 2.0 42 12-54 107-153 (293)
143 PF07091 FmrO: Ribosomal RNA m 93.1 0.061 1.3E-06 41.7 2.0 101 20-124 92-217 (251)
144 PF05401 NodS: Nodulation prot 93.0 0.05 1.1E-06 40.9 1.3 19 34-52 44-62 (201)
145 PF05148 Methyltransf_8: Hypot 92.7 0.12 2.7E-06 39.2 3.1 49 4-52 40-91 (219)
146 COG2519 GCD14 tRNA(1-methylade 92.6 0.083 1.8E-06 41.1 2.1 36 17-52 77-113 (256)
147 KOG3420 Predicted RNA methylas 92.5 0.046 1E-06 39.7 0.6 42 10-52 24-67 (185)
148 PRK11727 23S rRNA mA1618 methy 92.3 0.065 1.4E-06 42.9 1.2 20 33-52 114-133 (321)
149 COG0220 Predicted S-adenosylme 92.1 0.15 3.2E-06 38.9 2.9 49 7-55 17-70 (227)
150 TIGR01444 fkbM_fam methyltrans 91.7 0.08 1.7E-06 36.2 1.0 20 36-55 1-20 (143)
151 PLN02781 Probable caffeoyl-CoA 91.7 0.26 5.7E-06 37.3 3.9 20 33-52 68-87 (234)
152 PRK10901 16S rRNA methyltransf 91.6 0.11 2.4E-06 42.7 1.9 21 33-53 244-264 (427)
153 KOG1661 Protein-L-isoaspartate 91.3 0.15 3.2E-06 39.0 2.1 32 21-52 70-101 (237)
154 PRK03612 spermidine synthase; 91.3 0.19 4E-06 42.6 3.0 36 19-54 283-318 (521)
155 PLN02672 methionine S-methyltr 91.2 0.15 3.2E-06 46.9 2.5 21 35-55 120-140 (1082)
156 PLN02366 spermidine synthase 91.1 0.2 4.4E-06 39.8 2.8 24 31-54 89-112 (308)
157 PRK01581 speE spermidine synth 91.0 0.19 4.1E-06 41.1 2.6 36 19-54 136-171 (374)
158 PRK04457 spermidine synthase; 90.7 0.14 3.1E-06 39.5 1.6 21 32-52 65-85 (262)
159 KOG1500 Protein arginine N-met 90.7 0.46 9.9E-06 39.0 4.5 23 33-55 177-199 (517)
160 PF00891 Methyltransf_2: O-met 90.2 0.21 4.5E-06 37.5 2.2 24 32-55 99-122 (241)
161 KOG2899 Predicted methyltransf 90.2 0.18 3.8E-06 39.4 1.7 42 11-52 34-77 (288)
162 TIGR00417 speE spermidine synt 90.1 0.25 5.5E-06 38.1 2.5 23 32-54 71-93 (270)
163 PRK14904 16S rRNA methyltransf 90.0 0.33 7.1E-06 40.2 3.3 20 33-52 250-269 (445)
164 TIGR00446 nop2p NOL1/NOP2/sun 89.8 0.35 7.7E-06 37.2 3.1 20 33-52 71-90 (264)
165 PRK13256 thiopurine S-methyltr 89.7 0.66 1.4E-05 35.4 4.5 37 20-56 29-66 (226)
166 PF09243 Rsm22: Mitochondrial 89.7 0.3 6.6E-06 37.9 2.7 29 24-52 22-52 (274)
167 PRK14902 16S rRNA methyltransf 89.4 0.22 4.8E-06 41.1 1.8 20 33-52 250-269 (444)
168 TIGR02987 met_A_Alw26 type II 88.8 0.32 7E-06 40.9 2.5 33 20-52 9-50 (524)
169 PRK11783 rlmL 23S rRNA m(2)G24 88.8 0.32 7E-06 42.6 2.5 23 33-55 538-560 (702)
170 PRK01544 bifunctional N5-gluta 88.7 0.25 5.3E-06 41.8 1.6 23 33-55 347-369 (506)
171 PF05724 TPMT: Thiopurine S-me 88.5 0.57 1.2E-05 35.3 3.4 37 20-56 23-60 (218)
172 PF05958 tRNA_U5-meth_tr: tRNA 88.4 0.66 1.4E-05 37.3 3.9 35 21-55 183-218 (352)
173 TIGR00563 rsmB ribosomal RNA s 88.1 0.31 6.6E-06 40.1 1.8 20 33-52 238-257 (426)
174 PF02384 N6_Mtase: N-6 DNA Met 87.8 0.38 8.3E-06 37.4 2.2 34 20-53 31-66 (311)
175 PRK14901 16S rRNA methyltransf 87.4 0.39 8.4E-06 39.6 2.0 20 33-52 252-271 (434)
176 PRK00050 16S rRNA m(4)C1402 me 87.4 0.6 1.3E-05 37.0 3.0 23 33-55 19-41 (296)
177 KOG1540 Ubiquinone biosynthesi 87.3 0.59 1.3E-05 36.8 2.8 22 33-54 100-121 (296)
178 PRK14903 16S rRNA methyltransf 87.1 0.44 9.4E-06 39.4 2.2 20 33-52 237-256 (431)
179 KOG2940 Predicted methyltransf 86.3 0.52 1.1E-05 36.8 2.1 24 32-55 71-94 (325)
180 PF01728 FtsJ: FtsJ-like methy 85.9 0.44 9.6E-06 34.1 1.5 23 33-55 23-45 (181)
181 PF05219 DREV: DREV methyltran 85.8 0.83 1.8E-05 35.7 3.0 20 33-52 94-113 (265)
182 PRK04338 N(2),N(2)-dimethylgua 85.7 0.54 1.2E-05 38.4 2.1 42 14-55 35-79 (382)
183 PRK15128 23S rRNA m(5)C1962 me 85.7 0.6 1.3E-05 38.3 2.3 20 33-52 220-239 (396)
184 KOG3115 Methyltransferase-like 85.6 0.73 1.6E-05 35.2 2.5 20 33-52 60-79 (249)
185 PLN02476 O-methyltransferase 85.6 1 2.3E-05 35.4 3.5 37 17-53 100-138 (278)
186 PF01596 Methyltransf_3: O-met 84.7 0.95 2.1E-05 33.8 2.8 23 33-55 45-67 (205)
187 TIGR03439 methyl_EasF probable 84.7 1.2 2.5E-05 35.7 3.4 27 26-52 69-95 (319)
188 PF05891 Methyltransf_PK: AdoM 84.6 0.47 1E-05 36.1 1.1 20 33-52 55-74 (218)
189 PF02527 GidB: rRNA small subu 84.4 1.2 2.6E-05 32.8 3.2 38 15-52 22-67 (184)
190 PRK11760 putative 23S rRNA C24 84.3 0.71 1.5E-05 37.6 2.1 24 32-55 210-233 (357)
191 PF03291 Pox_MCEL: mRNA cappin 84.2 0.66 1.4E-05 37.2 1.9 39 33-73 62-100 (331)
192 PLN02668 indole-3-acetate carb 84.1 0.63 1.4E-05 38.2 1.7 49 34-82 64-126 (386)
193 COG3963 Phospholipid N-methylt 84.1 2.6 5.6E-05 31.3 4.7 47 23-69 36-84 (194)
194 COG0357 GidB Predicted S-adeno 83.6 2.5 5.5E-05 32.0 4.7 43 10-52 36-86 (215)
195 COG0500 SmtA SAM-dependent met 82.9 0.54 1.2E-05 29.8 0.7 12 37-48 52-63 (257)
196 KOG3045 Predicted RNA methylas 81.8 1.6 3.4E-05 34.6 3.0 30 20-49 164-196 (325)
197 PF05206 TRM13: Methyltransfer 81.1 1.9 4E-05 33.6 3.2 32 22-53 5-38 (259)
198 PLN03075 nicotianamine synthas 80.4 1.2 2.5E-05 35.4 1.9 16 33-48 123-138 (296)
199 KOG2361 Predicted methyltransf 79.6 1.4 3.1E-05 34.2 2.2 48 36-83 74-121 (264)
200 COG3897 Predicted methyltransf 79.3 1.9 4.1E-05 32.7 2.6 23 33-55 79-101 (218)
201 PF13938 DUF4213: Domain of un 78.3 0.7 1.5E-05 29.7 0.1 61 23-84 1-76 (87)
202 KOG3987 Uncharacterized conser 77.4 2.7 5.8E-05 32.4 3.0 19 34-52 113-131 (288)
203 PF03602 Cons_hypoth95: Conser 76.9 2 4.2E-05 31.5 2.1 43 13-56 19-65 (183)
204 COG2265 TrmA SAM-dependent met 76.0 2.9 6.2E-05 34.9 3.1 34 22-55 280-315 (432)
205 KOG2920 Predicted methyltransf 75.2 2.8 6E-05 33.2 2.7 33 22-54 100-137 (282)
206 KOG1331 Predicted methyltransf 75.0 4.1 8.9E-05 32.4 3.5 18 32-49 44-61 (293)
207 KOG4058 Uncharacterized conser 73.2 15 0.00033 26.9 5.8 31 26-56 63-95 (199)
208 KOG2915 tRNA(1-methyladenosine 71.8 5.8 0.00013 31.6 3.6 24 31-54 103-126 (314)
209 PLN02589 caffeoyl-CoA O-methyl 70.4 4.1 9E-05 31.4 2.6 21 33-53 79-99 (247)
210 KOG2187 tRNA uracil-5-methyltr 69.7 5.4 0.00012 34.1 3.3 32 23-54 371-404 (534)
211 KOG4589 Cell division protein 69.1 3.2 7E-05 31.4 1.7 22 31-52 67-91 (232)
212 PF04816 DUF633: Family of unk 68.5 3 6.5E-05 31.2 1.4 20 37-56 1-20 (205)
213 KOG1501 Arginine N-methyltrans 67.9 2.7 5.8E-05 35.7 1.1 20 35-54 68-87 (636)
214 COG5459 Predicted rRNA methyla 66.3 4.3 9.4E-05 33.6 2.0 20 33-52 113-132 (484)
215 KOG2651 rRNA adenine N-6-methy 66.0 5.5 0.00012 33.2 2.6 20 33-52 153-172 (476)
216 PF07101 DUF1363: Protein of u 65.5 2.4 5.3E-05 28.5 0.4 9 38-46 7-15 (124)
217 PF02636 Methyltransf_28: Puta 63.9 4 8.6E-05 31.0 1.3 18 35-52 20-37 (252)
218 PF02475 Met_10: Met-10+ like- 63.4 6.1 0.00013 29.5 2.2 46 26-72 94-139 (200)
219 PRK10742 putative methyltransf 61.6 9.9 0.00022 29.5 3.2 21 35-55 90-110 (250)
220 COG4076 Predicted RNA methylas 60.5 4.6 0.0001 30.7 1.1 19 34-52 33-51 (252)
221 PF01555 N6_N4_Mtase: DNA meth 60.4 7.9 0.00017 27.8 2.4 39 16-54 173-212 (231)
222 PRK05973 replicative DNA helic 59.7 29 0.00063 26.5 5.4 68 4-78 40-114 (237)
223 PLN02823 spermine synthase 58.7 9.5 0.00021 30.7 2.7 22 31-52 101-122 (336)
224 KOG3178 Hydroxyindole-O-methyl 57.4 7.6 0.00016 31.5 1.9 21 33-53 177-197 (342)
225 PF01739 CheR: CheR methyltran 56.3 5.3 0.00011 29.7 0.8 20 33-52 31-50 (196)
226 COG1189 Predicted rRNA methyla 53.5 11 0.00023 29.3 2.1 24 32-55 78-101 (245)
227 PRK13699 putative methylase; P 52.5 17 0.00038 27.4 3.1 38 18-55 147-185 (227)
228 PF01234 NNMT_PNMT_TEMT: NNMT/ 52.4 11 0.00024 29.3 2.1 68 33-103 56-134 (256)
229 COG0286 HsdM Type I restrictio 51.6 12 0.00026 31.6 2.3 26 20-45 171-198 (489)
230 COG4122 Predicted O-methyltran 50.8 16 0.00035 27.7 2.7 24 32-55 58-81 (219)
231 COG2384 Predicted SAM-dependen 49.1 14 0.00031 28.3 2.2 31 25-55 8-38 (226)
232 KOG1975 mRNA cap methyltransfe 48.7 10 0.00022 31.0 1.4 18 31-48 115-132 (389)
233 KOG2798 Putative trehalase [Ca 47.9 20 0.00044 29.2 2.9 34 22-55 133-172 (369)
234 PF03492 Methyltransf_7: SAM d 47.7 10 0.00022 30.4 1.3 52 32-83 15-81 (334)
235 COG3129 Predicted SAM-dependen 46.9 15 0.00033 28.8 2.0 29 16-44 57-89 (292)
236 PF12060 DUF3541: Domain of un 44.6 30 0.00065 26.4 3.3 34 73-107 149-188 (227)
237 KOG4135 Predicted phosphogluco 44.2 36 0.00078 24.9 3.5 33 80-112 26-65 (185)
238 PRK10611 chemotaxis methyltran 43.9 23 0.0005 27.9 2.7 18 35-52 117-134 (287)
239 KOG2793 Putative N2,N2-dimethy 43.8 15 0.00032 28.6 1.5 20 33-52 86-105 (248)
240 PHA01634 hypothetical protein 43.7 37 0.00079 24.3 3.4 25 33-57 28-52 (156)
241 COG1362 LAP4 Aspartyl aminopep 41.1 44 0.00095 28.1 4.0 59 23-81 361-432 (437)
242 COG1102 Cmk Cytidylate kinase 40.7 15 0.00033 27.1 1.1 38 40-77 9-55 (179)
243 PRK11524 putative methyltransf 40.1 32 0.00068 26.6 2.9 38 18-55 192-230 (284)
244 COG1352 CheR Methylase of chem 40.0 37 0.0008 26.5 3.3 19 34-52 97-115 (268)
245 PF12147 Methyltransf_20: Puta 39.7 17 0.00037 29.2 1.3 15 33-47 135-149 (311)
246 PF01170 UPF0020: Putative RNA 39.5 32 0.0007 24.8 2.7 31 22-52 15-47 (179)
247 PRK11783 rlmL 23S rRNA m(2)G24 39.5 31 0.00067 30.4 3.1 20 33-52 190-209 (702)
248 PF09445 Methyltransf_15: RNA 39.2 15 0.00033 26.6 0.9 18 36-53 2-19 (163)
249 PRK10310 PTS system galactitol 39.1 31 0.00067 22.4 2.3 33 40-75 7-48 (94)
250 COG3414 SgaB Phosphotransferas 37.4 27 0.00058 22.9 1.9 13 40-52 6-18 (93)
251 KOG0821 Predicted ribosomal RN 36.2 48 0.001 25.9 3.3 31 25-55 40-72 (326)
252 COG1155 NtpA Archaeal/vacuolar 33.5 1.2E+02 0.0025 26.5 5.4 70 18-87 352-442 (588)
253 PRK11747 dinG ATP-dependent DN 33.4 41 0.00089 29.7 2.9 26 23-48 33-64 (697)
254 PF07942 N2227: N2227-like pro 31.7 61 0.0013 25.4 3.3 23 34-56 57-79 (270)
255 PF11278 DUF3079: Protein of u 31.6 17 0.00037 21.3 0.2 9 38-46 26-34 (52)
256 COG1565 Uncharacterized conser 30.9 36 0.00077 28.0 1.9 20 33-52 77-96 (370)
257 TIGR02072 BioC biotin biosynth 30.5 68 0.0015 23.1 3.3 27 96-124 214-240 (240)
258 cd00740 MeTr MeTr subgroup of 30.2 53 0.0012 25.2 2.7 31 18-48 23-53 (252)
259 COG0742 N6-adenine-specific me 29.2 83 0.0018 23.4 3.5 43 14-56 21-66 (187)
260 PF11599 AviRa: RRNA methyltra 29.1 41 0.00089 26.0 1.9 39 14-52 26-70 (246)
261 PHA01976 helix-turn-helix prot 29.0 1.2E+02 0.0027 17.5 4.6 44 63-107 13-57 (67)
262 PRK10258 biotin biosynthesis p 28.5 85 0.0018 23.3 3.6 34 91-124 217-250 (251)
263 PF03288 Pox_D5: Poxvirus D5 p 28.3 1E+02 0.0022 19.0 3.4 28 77-104 27-57 (86)
264 COG0293 FtsJ 23S rRNA methylas 28.3 59 0.0013 24.5 2.6 22 31-52 43-64 (205)
265 TIGR02703 carboxysome_A carbox 27.9 36 0.00078 21.9 1.2 12 35-46 36-48 (81)
266 smart00488 DEXDc2 DEAD-like he 27.8 76 0.0016 24.7 3.3 37 15-52 7-46 (289)
267 smart00489 DEXDc3 DEAD-like he 27.8 76 0.0016 24.7 3.3 37 15-52 7-46 (289)
268 PF05971 Methyltransf_10: Prot 27.2 36 0.00078 27.1 1.3 12 34-45 103-114 (299)
269 PRK09273 hypothetical protein; 26.9 67 0.0014 24.4 2.7 36 16-52 45-81 (211)
270 TIGR02704 carboxysome_B carbox 26.4 40 0.00086 21.7 1.2 11 35-45 35-46 (80)
271 cd01614 EutN_CcmL Ethanolamine 26.3 40 0.00087 21.7 1.2 12 35-46 41-53 (83)
272 PF08825 E2_bind: E2 binding d 25.8 39 0.00085 21.7 1.1 21 61-81 2-22 (84)
273 PF05256 UPF0223: Uncharacteri 25.3 1.1E+02 0.0023 20.1 3.1 44 60-104 5-50 (88)
274 PF09370 TIM-br_sig_trns: TIM- 25.0 19 0.0004 28.4 -0.6 63 21-83 1-70 (268)
275 PF12088 DUF3565: Protein of u 24.9 47 0.001 20.3 1.2 17 34-50 9-25 (61)
276 PF04445 SAM_MT: Putative SAM- 24.7 35 0.00076 26.2 0.8 48 5-55 46-97 (234)
277 PF13578 Methyltransf_24: Meth 24.5 25 0.00054 22.5 0.0 17 38-54 1-17 (106)
278 KOG3361 Iron binding protein i 24.4 69 0.0015 22.8 2.2 49 34-87 76-150 (157)
279 PF08398 Parvo_coat_N: Parvovi 24.4 1.2E+02 0.0025 18.7 2.9 25 80-104 32-62 (64)
280 TIGR00308 TRM1 tRNA(guanine-26 24.3 36 0.00079 27.8 0.9 20 35-54 46-65 (374)
281 PF05575 V_cholerae_RfbT: Vibr 23.9 80 0.0017 23.7 2.6 31 16-46 62-92 (286)
282 KOG1663 O-methyltransferase [S 23.6 1.5E+02 0.0032 23.0 4.1 39 33-71 73-111 (237)
283 COG2933 Predicted SAM-dependen 23.6 65 0.0014 25.9 2.1 23 30-52 208-230 (358)
284 cd00423 Pterin_binding Pterin 23.1 99 0.0022 23.6 3.1 26 20-45 23-48 (258)
285 PRK15431 ferrous iron transpor 22.5 77 0.0017 20.3 2.0 28 18-45 27-59 (78)
286 PRK04387 hypothetical protein; 22.4 2.2E+02 0.0047 18.7 4.1 45 60-105 5-51 (90)
287 PRK11933 yebU rRNA (cytosine-C 22.2 57 0.0012 27.5 1.7 21 32-52 112-132 (470)
288 PF08498 Sterol_MT_C: Sterol m 22.2 32 0.0007 21.3 0.2 17 110-126 51-67 (67)
289 TIGR00284 dihydropteroate synt 22.1 52 0.0011 28.1 1.5 25 23-47 167-191 (499)
290 PF03341 Pox_mRNA-cap: Poxviru 21.7 62 0.0014 25.2 1.7 38 65-102 203-247 (287)
291 PF09358 UBA_e1_C: Ubiquitin-a 21.7 73 0.0016 21.9 1.9 19 59-77 36-54 (125)
292 PRK15448 ethanolamine cataboli 21.6 56 0.0012 21.6 1.2 11 36-46 42-53 (95)
293 PF04312 DUF460: Protein of un 21.4 47 0.001 23.6 0.9 69 35-107 32-102 (138)
294 KOG1098 Putative SAM-dependent 21.4 63 0.0014 28.8 1.8 50 31-80 42-111 (780)
295 KOG3048 Molecular chaperone Pr 21.1 53 0.0012 23.6 1.1 11 34-44 83-93 (153)
296 PF15353 HECA: Headcase protei 20.2 63 0.0014 21.9 1.3 18 76-93 67-88 (107)
No 1
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.97 E-value=1.6e-31 Score=202.53 Aligned_cols=125 Identities=51% Similarity=0.956 Sum_probs=114.2
Q ss_pred ChhhhhHHHHHHhhhCCCChHHHHHHHHhhcCCCCeEEEecCCCcccchhHh----------------------------
Q 047720 1 MARLFNKQAKLYLDARPTYPREWYSMLASLTTHHLLAWDAGMGNGQAALGVR---------------------------- 52 (126)
Q Consensus 1 ~~~~F~~~a~~Y~~~Rp~yp~~l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~---------------------------- 52 (126)
|...|..+|+.|...||+||.++|..|++....+..+|||||||||+++.++
T Consensus 1 ~~~~~~~~a~~Y~~ARP~YPtdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~ 80 (261)
T KOG3010|consen 1 MAKLFDKQAADYLNARPSYPTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYC 80 (261)
T ss_pred CcccccccHHHHhhcCCCCcHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccc
Confidence 6778999999999999999999999999999888899999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q 047720 53 -------------------------------------------------------------------------------- 52 (126)
Q Consensus 53 -------------------------------------------------------------------------------- 52 (126)
T Consensus 81 ~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~~~ 160 (261)
T KOG3010|consen 81 HTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDSTL 160 (261)
T ss_pred cCCccccccccccccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhccC
Confidence
Q ss_pred ----------------------------hcCCCcceeecceeCHHHHHHhHhhHHHHHHHHHhCCCcchHHHHHHHHHHh
Q 047720 53 ----------------------------FEGQPLELDMPKEVSFEGFLRMLRSFSAVNTAVEQGVDLLSEKVVKELETAW 104 (126)
Q Consensus 53 ----------------------------~~~~~~~~~i~~~~tl~~l~gYl~TWSay~~~~~~g~d~l~e~~~~~l~~~w 104 (126)
.++.|..|.+.+.+|+++|++|+||||+|++|+++|.|.+.+.++.+++++|
T Consensus 161 p~~r~~~~n~~fdgy~~~~F~~e~v~~~s~~~~~~l~~~~~lsl~~F~~~~rsws~~~~akek~~e~i~~~~I~e~~~~~ 240 (261)
T KOG3010|consen 161 PYWRSPLRNLLFDGYKTIEFPFESVGMGSQGKPKTLEIPHTLSLEGFSGFLRSWSAYKEAKEKGLELIADIFIPEFEEAW 240 (261)
T ss_pred chhhhHHHHhhccccccccccccccCCCCCCCceeehhhHHHHHHHHHHHHhCcHHHHHHHhcChHHHHHHHHHHHHhhc
Confidence 1222447899999999999999999999999999998877746999999999
Q ss_pred CCCCcEEEEEEEEEEEEeeeC
Q 047720 105 GGSELVRTIIYKTFMLVGKVK 125 (126)
Q Consensus 105 g~~~~~~~v~wp~f~~~gr~~ 125 (126)
|+++.+++|.|++|+.+||++
T Consensus 241 ~~~~~~~~V~y~tf~~~gk~~ 261 (261)
T KOG3010|consen 241 GEDNLVKTVVYSTFMLLGKVR 261 (261)
T ss_pred ccccceeEEEeeeeeeecccC
Confidence 999889999999999999975
No 2
>PRK05785 hypothetical protein; Provisional
Probab=98.12 E-value=2.1e-06 Score=64.92 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=37.5
Q ss_pred hhhhhHHHHHHhhhCC----CChH----HHHHHHHhhcCCCCeEEEecCCCcccchhHhhc
Q 047720 2 ARLFNKQAKLYLDARP----TYPR----EWYSMLASLTTHHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 2 ~~~F~~~a~~Y~~~Rp----~yp~----~l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
++.|+..|..|+...- .-.. .+.+.+....++..+|||||||||..+..|++.
T Consensus 12 ~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~ 72 (226)
T PRK05785 12 QEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKV 72 (226)
T ss_pred HHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHh
Confidence 4679999999998642 1122 234444444445789999999999999988854
No 3
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.09 E-value=3.2e-06 Score=58.85 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=35.7
Q ss_pred HhhhCCCChHHHHHHHHhhcCCCCeEEEecCCCcccchhHhhcC
Q 047720 12 YLDARPTYPREWYSMLASLTTHHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 12 Y~~~Rp~yp~~l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
|++.+.+-..+++..+....+...+|||||||+|..+..|++.+
T Consensus 1 y~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 44 (161)
T PF13489_consen 1 YARHRYRAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRG 44 (161)
T ss_dssp ---GCCHCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhC
Confidence 78888888888888888766788999999999999999998665
No 4
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.90 E-value=9.5e-06 Score=61.51 Aligned_cols=50 Identities=24% Similarity=0.233 Sum_probs=35.4
Q ss_pred hhhhhHHHHHHhhhCCCChHHHHHHHHhhcC--CCCeEEEecCCCcccchhHh
Q 047720 2 ARLFNKQAKLYLDARPTYPREWYSMLASLTT--HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 2 ~~~F~~~a~~Y~~~Rp~yp~~l~~~l~~~~~--~~~~~~Dig~GtG~~~~~L~ 52 (126)
++.|+..|+.|+++..- =....+.|++.++ +..+|||||||||.++..|+
T Consensus 10 ~~~F~~aa~~Y~~~~~~-q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~ 61 (251)
T PRK10258 10 AAAFGRAAAHYEQHAEL-QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWR 61 (251)
T ss_pred HHHHHHHHHhHhHHHHH-HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHH
Confidence 46899999999875431 1123345555554 35789999999999888876
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.61 E-value=7.9e-05 Score=57.42 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=35.5
Q ss_pred hhhhhHHHHHHhhhCCCC--h-HHHHH-HHHhh--cCCCCeEEEecCCCcccchhHhhc
Q 047720 2 ARLFNKQAKLYLDARPTY--P-REWYS-MLASL--TTHHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 2 ~~~F~~~a~~Y~~~Rp~y--p-~~l~~-~l~~~--~~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
++.|+..|..|+...... . ..... .+.+. ..+..++||||||||..+..|++.
T Consensus 36 ~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~ 94 (261)
T PLN02233 36 QALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEK 94 (261)
T ss_pred HHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHH
Confidence 357999999999754321 1 12333 22332 346689999999999988888743
No 6
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.60 E-value=5.8e-05 Score=56.29 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=36.4
Q ss_pred hhhhhHHHHHHhhhCCCC----hHHHHHHHHhhc--CCCCeEEEecCCCcccchhHhh
Q 047720 2 ARLFNKQAKLYLDARPTY----PREWYSMLASLT--THHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 2 ~~~F~~~a~~Y~~~Rp~y----p~~l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~ 53 (126)
++.|+..|..|+...... ...+.+.++..+ .+..+|||||||||..+..|++
T Consensus 8 ~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~ 65 (231)
T TIGR02752 8 HKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAE 65 (231)
T ss_pred HHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHH
Confidence 578999999999864321 222334444444 3567999999999999888874
No 7
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.58 E-value=9.1e-05 Score=56.44 Aligned_cols=49 Identities=29% Similarity=0.435 Sum_probs=34.5
Q ss_pred hhH-HHHHH----hhhCCCChHHH--HHHHHh-hcCCCCeEEEecCCCcccchhHhh
Q 047720 5 FNK-QAKLY----LDARPTYPREW--YSMLAS-LTTHHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 5 F~~-~a~~Y----~~~Rp~yp~~l--~~~l~~-~~~~~~~~~Dig~GtG~~~~~L~~ 53 (126)
|+. .|+.| .+..|.|+.-. +..++. ..++..+|||||||||..+..|+.
T Consensus 20 f~~~~a~~yd~~~~~~~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~ 76 (247)
T PRK15451 20 FDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRR 76 (247)
T ss_pred cChHHHHhhhhHHHhcCCChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHH
Confidence 554 46788 67789998432 223333 345778999999999999887764
No 8
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.53 E-value=5.9e-05 Score=57.32 Aligned_cols=45 Identities=18% Similarity=0.096 Sum_probs=31.1
Q ss_pred HHHHHhhhCCCChHHHHHHHHhhc--CCCCeEEEecCCCcccchhHhh
Q 047720 8 QAKLYLDARPTYPREWYSMLASLT--THHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 8 ~a~~Y~~~Rp~yp~~l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~ 53 (126)
.++.|+++.+... ...+.|+..+ .+..+|||||||+|.++..|++
T Consensus 5 ~~~~Y~~~~~~~~-~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~ 51 (258)
T PRK01683 5 NPSLYLKFEDERT-RPARDLLARVPLENPRYVVDLGCGPGNSTELLVE 51 (258)
T ss_pred CHHHHHHHHHHhh-cHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHH
Confidence 3778887765432 2333444433 3568999999999999998883
No 9
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.46 E-value=5.6e-05 Score=55.85 Aligned_cols=49 Identities=29% Similarity=0.230 Sum_probs=30.7
Q ss_pred hhhHHHHHHhhhCCCChHHHHHHHHhhc-----CCCCeEEEecCCCcccchhHhh
Q 047720 4 LFNKQAKLYLDARPTYPREWYSMLASLT-----THHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 4 ~F~~~a~~Y~~~Rp~yp~~l~~~l~~~~-----~~~~~~~Dig~GtG~~~~~L~~ 53 (126)
.|+..+..|.++. .+=..+...++..+ ....+|||||||+|..+..|++
T Consensus 1 ~~~~~~~~y~~~~-~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~ 54 (240)
T TIGR02072 1 SFNKAAKTYDRHA-KIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLK 54 (240)
T ss_pred CcchhhhchhHHH-HHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHH
Confidence 3677778888652 22223333343332 2346899999999988887773
No 10
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.45 E-value=0.00019 Score=54.75 Aligned_cols=53 Identities=25% Similarity=0.215 Sum_probs=35.9
Q ss_pred hhhhHHHHHHhhhCCCChHH---------HHHHHHhhc-CCCCeEEEecCCCcccchhHhhcC
Q 047720 3 RLFNKQAKLYLDARPTYPRE---------WYSMLASLT-THHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 3 ~~F~~~a~~Y~~~Rp~yp~~---------l~~~l~~~~-~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+.|+.-|+.|++..=.-|.. -++.+++.+ ....+|||+|||+|..+..|++.+
T Consensus 4 ~~fd~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g 66 (255)
T PRK11036 4 RNFDDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELG 66 (255)
T ss_pred CChhhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcC
Confidence 57899999998855222211 112333333 345789999999999999999555
No 11
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.34 E-value=8.6e-05 Score=56.57 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=19.4
Q ss_pred hhhhhHHHHHHhhh----CCCChHHHHHHHHhhc--CCCCeEEEecCCCcccchhHhhc
Q 047720 2 ARLFNKQAKLYLDA----RPTYPREWYSMLASLT--THHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 2 ~~~F~~~a~~Y~~~----Rp~yp~~l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
++.|+..|..|+.. -.....-+-..+.+.. .+..+|||||||||.++..|++.
T Consensus 10 ~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~ 68 (233)
T PF01209_consen 10 RKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARR 68 (233)
T ss_dssp ---------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHH
Confidence 46788889999874 1122222223344332 35679999999999999999844
No 12
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.33 E-value=0.00027 Score=51.72 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=31.7
Q ss_pred HHHHhhhCCCChHHHHHHHH-------hhcCCCCeEEEecCCCcccchhHh
Q 047720 9 AKLYLDARPTYPREWYSMLA-------SLTTHHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 9 a~~Y~~~Rp~yp~~l~~~l~-------~~~~~~~~~~Dig~GtG~~~~~L~ 52 (126)
...+.-.||.-|.++++... ..+ ...++||||||||.++..|+
T Consensus 12 ~~~~~l~~~~~~~~~~~~~~~d~i~~~~~~-~~~~vLDiGcGtG~~s~~la 61 (181)
T TIGR00138 12 NKRFNLTSLKTPEEIWERHILDSLKLLEYL-DGKKVIDIGSGAGFPGIPLA 61 (181)
T ss_pred hhcccccccCCHHHHHHHHHHHHHHHHHhc-CCCeEEEecCCCCccHHHHH
Confidence 45566679998888765322 122 36799999999999999887
No 13
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.33 E-value=0.00017 Score=54.96 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=26.5
Q ss_pred hhhCCCChHHHHHHHHhhcCCCCeEEEecCCCcccchhHhhc
Q 047720 13 LDARPTYPREWYSMLASLTTHHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 13 ~~~Rp~yp~~l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
+.+|+.+...+++.+. ..+..+|||||||+|.+++.|+..
T Consensus 11 ~~~~~~~~~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~ 50 (255)
T PRK14103 11 ADHRGRPFYDLLARVG--AERARRVVDLGCGPGNLTRYLARR 50 (255)
T ss_pred HhHhhCHHHHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHH
Confidence 4445554444433332 235689999999999999999843
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.32 E-value=0.00012 Score=48.25 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=19.1
Q ss_pred CCCeEEEecCCCcccchhHhh
Q 047720 33 HHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~ 53 (126)
+..+|||||||+|..+..|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~ 21 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALAR 21 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHH
T ss_pred CCCEEEEEcCcCCHHHHHHHh
Confidence 357899999999999999997
No 15
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.32 E-value=0.00033 Score=51.81 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=35.0
Q ss_pred hhhhHHHHHHhhhC----CCChHHHHHHHHhhc--CCCCeEEEecCCCcccchhHhhc
Q 047720 3 RLFNKQAKLYLDAR----PTYPREWYSMLASLT--THHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 3 ~~F~~~a~~Y~~~R----p~yp~~l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
+.|+..+..|+++. ..+...+...+.... .+..+|||||||+|..+..++..
T Consensus 15 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~ 72 (239)
T PRK00216 15 EMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKA 72 (239)
T ss_pred HHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHH
Confidence 57888889997532 233444444444433 24579999999999988877643
No 16
>PRK06202 hypothetical protein; Provisional
Probab=97.30 E-value=0.00015 Score=54.38 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=17.5
Q ss_pred CCCCeEEEecCCCcccchhHh
Q 047720 32 THHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~ 52 (126)
.+..+|||||||||.++..|+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~ 79 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLA 79 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHH
Confidence 355789999999999887775
No 17
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.24 E-value=0.00045 Score=53.04 Aligned_cols=51 Identities=29% Similarity=0.315 Sum_probs=36.2
Q ss_pred hhhhhHHHHHHhhhCC----CChHHHHHHHHhhcC--CCCeEEEecCCCcccchhHh
Q 047720 2 ARLFNKQAKLYLDARP----TYPREWYSMLASLTT--HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 2 ~~~F~~~a~~Y~~~Rp----~yp~~l~~~l~~~~~--~~~~~~Dig~GtG~~~~~L~ 52 (126)
++.|++.|..|+..=. .-...+-+.+.+... +...+||||||||..|..++
T Consensus 14 ~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~ 70 (238)
T COG2226 14 QKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLA 70 (238)
T ss_pred HHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHH
Confidence 4678888999987531 222333445554433 57899999999999999998
No 18
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.16 E-value=0.00049 Score=50.39 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=37.6
Q ss_pred hhhhhHHHHHHhhhCCCCh----HHHHHHHHhhc--CCCCeEEEecCCCcccchhHhhcC
Q 047720 2 ARLFNKQAKLYLDARPTYP----REWYSMLASLT--THHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 2 ~~~F~~~a~~Y~~~Rp~yp----~~l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
++.|+..++.|+.....+- ..+.+.+.... .+..++||+|||+|..+..++...
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~ 61 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSA 61 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhc
Confidence 5789999999999854321 22333444433 256799999999999988887443
No 19
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.00029 Score=55.77 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=26.3
Q ss_pred HHHHHhhcCCCCeEEEecCCCcccchhHhhcC
Q 047720 24 YSMLASLTTHHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 24 ~~~l~~~~~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.++|.++..+..+|+|+|||||.++...++.|
T Consensus 153 L~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG 184 (300)
T COG2264 153 LEALEKLLKKGKTVLDVGCGSGILAIAAAKLG 184 (300)
T ss_pred HHHHHHhhcCCCEEEEecCChhHHHHHHHHcC
Confidence 45666666788999999999999999888555
No 20
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.14 E-value=0.00049 Score=50.74 Aligned_cols=40 Identities=20% Similarity=0.129 Sum_probs=26.5
Q ss_pred hCCCChHHHHHHHHhhcCCCCeEEEecCCCcccchhHhhcC
Q 047720 15 ARPTYPREWYSMLASLTTHHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 15 ~Rp~yp~~l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+=+..|...+...+... +..+|||+|||+|..+..|++.+
T Consensus 13 ~~~~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~a~~La~~g 52 (197)
T PRK11207 13 YGLTRTHSEVLEAVKVV-KPGKTLDLGCGNGRNSLYLAANG 52 (197)
T ss_pred cCCCCChHHHHHhcccC-CCCcEEEECCCCCHHHHHHHHCC
Confidence 33444444333333333 35789999999999999999665
No 21
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.14 E-value=0.00054 Score=51.64 Aligned_cols=49 Identities=24% Similarity=0.416 Sum_probs=33.2
Q ss_pred hh-HHHHHHhhh----CCCChHHHHHHHH---hh-cCCCCeEEEecCCCcccchhHhhc
Q 047720 5 FN-KQAKLYLDA----RPTYPREWYSMLA---SL-TTHHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 5 F~-~~a~~Y~~~----Rp~yp~~l~~~l~---~~-~~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
|+ ..|+.|+.. .|.|. ++++.+. .. .++..++||||||||..+..|++.
T Consensus 17 ~~~~~a~~y~~~~~~~~p~y~-~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~ 74 (239)
T TIGR00740 17 FDENVAEVFPDMIQRSVPGYS-NIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRN 74 (239)
T ss_pred cChHHHHhCcchhhccCCCHH-HHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHh
Confidence 44 457888865 36665 4444333 22 346778999999999999888753
No 22
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.11 E-value=0.00034 Score=52.15 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=25.9
Q ss_pred HHHHHhhcCCCCeEEEecCCCcccchhHhhc
Q 047720 24 YSMLASLTTHHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 24 ~~~l~~~~~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
++.|++.+++..+|||||||.|.+-..|.++
T Consensus 4 ~~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~ 34 (193)
T PF07021_consen 4 LQIIAEWIEPGSRVLDLGCGDGELLAYLKDE 34 (193)
T ss_pred HHHHHHHcCCCCEEEecCCCchHHHHHHHHh
Confidence 3567778888999999999999988888743
No 23
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.11 E-value=0.00044 Score=53.59 Aligned_cols=36 Identities=8% Similarity=-0.023 Sum_probs=29.1
Q ss_pred hHHHHHHHHhhcC--CCCeEEEecCCCcccchhHhhcC
Q 047720 20 PREWYSMLASLTT--HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 20 p~~l~~~l~~~~~--~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
++.+.+.+++.+. +...|||||||+|.+|..|++.+
T Consensus 27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~ 64 (272)
T PRK00274 27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA 64 (272)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC
Confidence 5577788877643 56789999999999999999654
No 24
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.10 E-value=0.00042 Score=51.64 Aligned_cols=26 Identities=8% Similarity=-0.023 Sum_probs=21.1
Q ss_pred hhcCCCCeEEEecCCCcccchhHhhc
Q 047720 29 SLTTHHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 29 ~~~~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
..+++..+|||||||||..+..|+..
T Consensus 39 ~~~~~~~~VLDiGCG~G~~~~~L~~~ 64 (204)
T TIGR03587 39 NRLPKIASILELGANIGMNLAALKRL 64 (204)
T ss_pred HhcCCCCcEEEEecCCCHHHHHHHHh
Confidence 34566778999999999999888754
No 25
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=97.09 E-value=0.00031 Score=47.91 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCcccchhHhhcCCCc-ceeecc
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEGQPL-ELDMPK 64 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~~~~-~~~i~~ 64 (126)
+.+.-+|||||+|.+.-.|..+|++- .|..++
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 35678999999999999999999863 444443
No 26
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.09 E-value=0.00058 Score=50.43 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=29.2
Q ss_pred HHHhhhCCCChHHHHH-HH------HhhcCCCCeEEEecCCCcccchhHh
Q 047720 10 KLYLDARPTYPREWYS-ML------ASLTTHHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 10 ~~Y~~~Rp~yp~~l~~-~l------~~~~~~~~~~~Dig~GtG~~~~~L~ 52 (126)
+.+.-.+++-.+++.. .+ ...+++..++||||||||..+..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la 64 (187)
T PRK00107 15 KKYNLTAIRDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLA 64 (187)
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHH
Confidence 4455556666666443 22 2334557899999999999998887
No 27
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.06 E-value=0.00049 Score=54.34 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=23.3
Q ss_pred HHHHHhhcCCCCeEEEecCCCcccchhHhhcC
Q 047720 24 YSMLASLTTHHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 24 ~~~l~~~~~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.+.|..+..+..+|||||||||.++..-++.|
T Consensus 152 l~~l~~~~~~g~~vLDvG~GSGILaiaA~klG 183 (295)
T PF06325_consen 152 LELLEKYVKPGKRVLDVGCGSGILAIAAAKLG 183 (295)
T ss_dssp HHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT
T ss_pred HHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC
Confidence 34555666677899999999999988777333
No 28
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.05 E-value=0.0005 Score=50.29 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=23.6
Q ss_pred HHHHhhcCCCCeEEEecCCCcccchhHhhc
Q 047720 25 SMLASLTTHHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 25 ~~l~~~~~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
+.+...+++..++||||||+|..+..|++.
T Consensus 5 ~~i~~~i~~~~~iLDiGcG~G~~~~~l~~~ 34 (194)
T TIGR02081 5 ESILNLIPPGSRVLDLGCGDGELLALLRDE 34 (194)
T ss_pred HHHHHhcCCCCEEEEeCCCCCHHHHHHHhc
Confidence 455555666789999999999999888743
No 29
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.03 E-value=0.00086 Score=44.54 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=27.3
Q ss_pred hHHHHHHHHhhcC--CCCeEEEecCCCcccchhHhhcC
Q 047720 20 PREWYSMLASLTT--HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 20 p~~l~~~l~~~~~--~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
..++.+.+.+... ...+++|+|||+|..+..+++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~ 41 (124)
T TIGR02469 4 KREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLV 41 (124)
T ss_pred hHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHC
Confidence 3455666666543 45799999999999999999764
No 30
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.02 E-value=0.00072 Score=53.80 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=26.5
Q ss_pred CCCChHHHHHHHHhhcC-----CCCeEEEecCCCcccchhHhhcC
Q 047720 16 RPTYPREWYSMLASLTT-----HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 16 Rp~yp~~l~~~l~~~~~-----~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
|+.+ ..+++.+.+.+. +..++||||||||.++..|++.+
T Consensus 123 ~~~~-~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g 166 (315)
T PLN02585 123 RLGH-AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG 166 (315)
T ss_pred ccCh-HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC
Confidence 4443 344555554432 45799999999999999998444
No 31
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.02 E-value=0.00044 Score=51.67 Aligned_cols=24 Identities=13% Similarity=-0.018 Sum_probs=20.5
Q ss_pred cCCCCeEEEecCCCcccchhHhhc
Q 047720 31 TTHHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 31 ~~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
+++...|||||||||..+..|++.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~ 72 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQ 72 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHH
Confidence 456789999999999999988754
No 32
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=96.94 E-value=0.00056 Score=52.24 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=18.2
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
....|+|||||+|..|..|+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~ 49 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLA 49 (257)
T ss_pred ccceeeecCCCCCHHHHHHH
Confidence 45789999999999999999
No 33
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.94 E-value=0.00043 Score=48.59 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=18.3
Q ss_pred CCCeEEEecCCCcccchhHhhc
Q 047720 33 HHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
...+|||||||||..+..|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~ 24 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKE 24 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHH
T ss_pred CCCEEEEecCcCcHHHHHHHHh
Confidence 4578999999999999999953
No 34
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=96.93 E-value=0.0011 Score=49.78 Aligned_cols=37 Identities=5% Similarity=-0.142 Sum_probs=27.2
Q ss_pred hHHHHHHHHhhc--CCCCeEEEecCCCcccchhHhhcCC
Q 047720 20 PREWYSMLASLT--THHLLAWDAGMGNGQAALGVRFEGQ 56 (126)
Q Consensus 20 p~~l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~~~~ 56 (126)
|.+++......+ ++..+|||+|||.|..+..||+.|.
T Consensus 19 p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~ 57 (213)
T TIGR03840 19 VNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH 57 (213)
T ss_pred CCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC
Confidence 445554444433 4667999999999999999997774
No 35
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=96.92 E-value=0.00068 Score=54.08 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=18.5
Q ss_pred CCeEEEecCCCcccchhHhhcC
Q 047720 34 HLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 34 ~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
..+|||||||+|.++..|+..+
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g 153 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMG 153 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcC
Confidence 4589999999999999998443
No 36
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.89 E-value=0.0013 Score=47.76 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=27.6
Q ss_pred hCCCChHHHHHHHHhhc--CCCCeEEEecCCCcccchhHh
Q 047720 15 ARPTYPREWYSMLASLT--THHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 15 ~Rp~yp~~l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~ 52 (126)
.+|-=++++...+.+.+ .+..++||||||+|.++..++
T Consensus 11 ~~~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la 50 (187)
T PRK08287 11 KVPMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAA 50 (187)
T ss_pred CCCCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHH
Confidence 45544555555555543 467899999999999998887
No 37
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=96.87 E-value=0.00074 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.2
Q ss_pred CCCeEEEecCCCcccchhHhhcC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+..+|||+|||+|..+..|++.+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g 52 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAG 52 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCC
Confidence 45789999999999999999665
No 38
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.85 E-value=0.001 Score=50.82 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=23.3
Q ss_pred HHHHHHhhcCCCCeEEEecCCCcccchhHhh
Q 047720 23 WYSMLASLTTHHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 23 l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~~ 53 (126)
..+.|.....+..+|||+|||||.++..++.
T Consensus 109 ~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~ 139 (250)
T PRK00517 109 CLEALEKLVLPGKTVLDVGCGSGILAIAAAK 139 (250)
T ss_pred HHHHHHhhcCCCCEEEEeCCcHHHHHHHHHH
Confidence 3445555556778999999999998887773
No 39
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.84 E-value=0.00088 Score=49.64 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=18.8
Q ss_pred CCCeEEEecCCCcccchhHhhc
Q 047720 33 HHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
+..+|||||||+|.++..|++.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~ 84 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARR 84 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHc
Confidence 4678999999999999988743
No 40
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=96.82 E-value=0.0011 Score=49.27 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=18.2
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
+..++||||||+|.++..|+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la 74 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELA 74 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHH
Confidence 46889999999999999988
No 41
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.81 E-value=0.0013 Score=50.27 Aligned_cols=35 Identities=9% Similarity=0.037 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcC--CCCeEEEecCCCcccchhHhhcC
Q 047720 21 REWYSMLASLTT--HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 21 ~~l~~~l~~~~~--~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+.+.+.+++.++ +...|||||||+|.+|..|++.+
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~ 51 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA 51 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC
Confidence 456777776553 56899999999999999999665
No 42
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.81 E-value=0.0013 Score=48.85 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=25.1
Q ss_pred HHHHHHHhhc--CCCCeEEEecCCCcccchhHhhc
Q 047720 22 EWYSMLASLT--THHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 22 ~l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
.+...+.+.+ .+..++||||||||..+..|++.
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~ 93 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEA 93 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHh
Confidence 4455666654 35679999999999999888864
No 43
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=96.81 E-value=0.0012 Score=51.91 Aligned_cols=29 Identities=14% Similarity=-0.009 Sum_probs=22.8
Q ss_pred HHHhhcCCCCeEEEecCCCcccchhHhhc
Q 047720 26 MLASLTTHHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 26 ~l~~~~~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
.|+..+++...+||+|||||..|+.|++.
T Consensus 56 ~ia~~~~~~~~iLELGcGtG~~t~~Ll~~ 84 (301)
T TIGR03438 56 EIAAATGAGCELVELGSGSSRKTRLLLDA 84 (301)
T ss_pred HHHHhhCCCCeEEecCCCcchhHHHHHHh
Confidence 34445566678999999999999988855
No 44
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.80 E-value=0.0017 Score=47.60 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=28.2
Q ss_pred CCCChHHHHHHHHhhcC--CCCeEEEecCCCcccchhHh
Q 047720 16 RPTYPREWYSMLASLTT--HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 16 Rp~yp~~l~~~l~~~~~--~~~~~~Dig~GtG~~~~~L~ 52 (126)
.|.-+.++-..+.+.+. +..++||+|||+|..+..++
T Consensus 21 ~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la 59 (196)
T PRK07402 21 IPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAG 59 (196)
T ss_pred CCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHH
Confidence 34556666666666654 66899999999999998887
No 45
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.79 E-value=0.0012 Score=50.78 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=28.2
Q ss_pred hHHHHHHHHhhc--CCCCeEEEecCCCcccchhHhhcC
Q 047720 20 PREWYSMLASLT--THHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 20 p~~l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.+.+.+.|++.+ .+...|||||||+|.+|..|++.+
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~ 51 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA 51 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC
Confidence 345667777654 356899999999999999999664
No 46
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.77 E-value=0.0013 Score=47.28 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.3
Q ss_pred CCCeEEEecCCCcccchhHhhcC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
....+||+|||+|-++..|+...
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~ 53 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRG 53 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTS
T ss_pred cCCeEEEecCChHHHHHHHHHhC
Confidence 57789999999999999999654
No 47
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.77 E-value=0.0014 Score=48.80 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=25.5
Q ss_pred HHHHHHhhc--CCCCeEEEecCCCcccchhHhhcC
Q 047720 23 WYSMLASLT--THHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 23 l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
++..+.+.+ .+..++||||||||..+..|++..
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~ 99 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIV 99 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHh
Confidence 445555544 366899999999999999999764
No 48
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=96.76 E-value=0.00079 Score=52.53 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=18.6
Q ss_pred CeEEEecCCCcccchhHhhcC
Q 047720 35 LLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 35 ~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+.++|+|||+|.++..||..|
T Consensus 91 ~~ilDvGCGgGLLSepLArlg 111 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG 111 (282)
T ss_pred ceEEEeccCccccchhhHhhC
Confidence 679999999999999999444
No 49
>PRK14967 putative methyltransferase; Provisional
Probab=96.75 E-value=0.0014 Score=48.98 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=28.8
Q ss_pred hCCCChHHHHHHHHhh--cCCCCeEEEecCCCcccchhHhhcC
Q 047720 15 ARPTYPREWYSMLASL--TTHHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 15 ~Rp~yp~~l~~~l~~~--~~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
|||.--.+++-.++.. ..+..++||+|||+|.++..++..+
T Consensus 16 ~~p~~ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~ 58 (223)
T PRK14967 16 YRPQEDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAG 58 (223)
T ss_pred cCCCCcHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcC
Confidence 5777655554433332 3456799999999999999888543
No 50
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.74 E-value=0.00045 Score=51.20 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=19.5
Q ss_pred CCCeEEEecCCCcccchhHhhc
Q 047720 33 HHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
+...|||||||||..+..|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~ 61 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKA 61 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHH
Confidence 5678999999999999999865
No 51
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.73 E-value=0.00082 Score=51.55 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.1
Q ss_pred CCCeEEEecCCCcccchhHhhcC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+...+||||||||..+..|.+.|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G 72 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG 72 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC
Confidence 36789999999999999888444
No 52
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.70 E-value=0.0011 Score=47.50 Aligned_cols=31 Identities=10% Similarity=0.055 Sum_probs=23.6
Q ss_pred HHHHhhc--CCCCeEEEecCCCcccchhHhhcC
Q 047720 25 SMLASLT--THHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 25 ~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+.+++.+ .+...+||||||+|.++..|++.+
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~ 35 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERA 35 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcC
Confidence 4455543 355789999999999999999653
No 53
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.70 E-value=0.0017 Score=48.15 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.1
Q ss_pred CCCCeEEEecCCCcccchhHh
Q 047720 32 THHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~ 52 (126)
.+++.+||||||||-.|..++
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a 53 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWA 53 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHH
Confidence 377899999999999999988
No 54
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=96.69 E-value=0.0014 Score=52.19 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=23.3
Q ss_pred HHHhhcC--CCCeEEEecCCCcccchhHhhcC
Q 047720 26 MLASLTT--HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 26 ~l~~~~~--~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.|..+++ ...+|||||||+|..+..++..+
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g 144 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAG 144 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcC
Confidence 4444443 45789999999999999998766
No 55
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.69 E-value=0.0014 Score=54.18 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=25.8
Q ss_pred HHHHHHHHhhcCCCCeEEEecCCCcccchhHh
Q 047720 21 REWYSMLASLTTHHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 21 ~~l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~ 52 (126)
+.+++.+.+.+++..++||||||||..+..|+
T Consensus 239 E~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA 270 (423)
T PRK14966 239 EHLVEAVLARLPENGRVWDLGTGSGAVAVTVA 270 (423)
T ss_pred HHHHHHhhhccCCCCEEEEEeChhhHHHHHHH
Confidence 45677777666666799999999999998887
No 56
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=96.68 E-value=0.0015 Score=50.86 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=23.9
Q ss_pred hHHHHHHHHhhcCCCCeEEEecCCCcccchhHhhcC
Q 047720 20 PREWYSMLASLTTHHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 20 p~~l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.+++.+.+. .. ...+|||||||+|..+..|+..|
T Consensus 109 ~~~~~~~~~-~~-~~~~vLDlGcG~G~~~~~la~~g 142 (287)
T PRK12335 109 HSEVLEAVQ-TV-KPGKALDLGCGQGRNSLYLALLG 142 (287)
T ss_pred cHHHHHHhh-cc-CCCCEEEeCCCCCHHHHHHHHCC
Confidence 444555442 23 34589999999999999998554
No 57
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.60 E-value=0.0018 Score=50.53 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=21.8
Q ss_pred HHhhcCCCCeEEEecCCCcccchhHhhcC
Q 047720 27 LASLTTHHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 27 l~~~~~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
|.....+..+|||+|||||.++..+++.+
T Consensus 153 l~~~~~~g~~VLDvGcGsG~lai~aa~~g 181 (288)
T TIGR00406 153 LEDLDLKDKNVIDVGCGSGILSIAALKLG 181 (288)
T ss_pred HHhhcCCCCEEEEeCCChhHHHHHHHHcC
Confidence 33344466899999999999998887443
No 58
>PRK04148 hypothetical protein; Provisional
Probab=96.58 E-value=0.0023 Score=45.13 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=27.6
Q ss_pred HHHHHHHhhcC--CCCeEEEecCCCcc-cchhHhhcCC
Q 047720 22 EWYSMLASLTT--HHLLAWDAGMGNGQ-AALGVRFEGQ 56 (126)
Q Consensus 22 ~l~~~l~~~~~--~~~~~~Dig~GtG~-~~~~L~~~~~ 56 (126)
++.++|++..+ ...+++|||||+|. ++..|++.|.
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~ 40 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF 40 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC
Confidence 56777777654 34689999999996 9999998874
No 59
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.58 E-value=0.0021 Score=49.69 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=17.4
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
+..+++|+|||||..+..|-
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR 144 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALR 144 (287)
T ss_pred ccceeeecccCcCcccHhHH
Confidence 46789999999999998776
No 60
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=96.57 E-value=0.002 Score=48.00 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=19.3
Q ss_pred CCCeEEEecCCCcccchhHhhcCC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEGQ 56 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~~ 56 (126)
+..+|||||||.|..++-||+.|.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~ 53 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGF 53 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCC
Confidence 467999999999999999997774
No 61
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=96.57 E-value=0.0023 Score=49.36 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=17.6
Q ss_pred CCCeEEEecCCCcccchhHhh
Q 047720 33 HHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~ 53 (126)
...++||||||||..+..|++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~ 105 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALAD 105 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHH
Confidence 446799999999998888774
No 62
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.55 E-value=0.0024 Score=47.72 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=26.2
Q ss_pred HHHHHHHHhhc--CCCCeEEEecCCCcccchhHhhc
Q 047720 21 REWYSMLASLT--THHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 21 ~~l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
+.+...+...+ .+..+|||||||||-.|..|++.
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~ 97 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEI 97 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHh
Confidence 45566666544 46789999999999999888855
No 63
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=96.55 E-value=0.0012 Score=48.61 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.0
Q ss_pred CCCeEEEecCCCcccchhHhhcC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
...++||||||+|.++..|+...
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~ 38 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN 38 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC
Confidence 56799999999999999999653
No 64
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=96.55 E-value=0.0016 Score=50.12 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=21.0
Q ss_pred CCCeEEEecCCCcccchhHhhcC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
...+|||||||-|+++..||..|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G 81 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG 81 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC
Confidence 56789999999999999999777
No 65
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=96.53 E-value=0.0021 Score=48.07 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=25.0
Q ss_pred HHHHHHHhhc-----C-CCCeEEEecCCCcccchhHhhcC
Q 047720 22 EWYSMLASLT-----T-HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 22 ~l~~~l~~~~-----~-~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.++++|.+.+ . ..++|||+|||+|.+-+.|+++|
T Consensus 50 riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~eg 89 (227)
T KOG1271|consen 50 RIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEG 89 (227)
T ss_pred HHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhc
Confidence 3566776643 2 33489999999999999998555
No 66
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=96.51 E-value=0.0024 Score=50.87 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=19.9
Q ss_pred CCCeEEEecCCCcccchhHhhcC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+..+|||||||||..+..++..+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g 143 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHG 143 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC
Confidence 45789999999999998888665
No 67
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=96.50 E-value=0.0028 Score=46.88 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=26.7
Q ss_pred hHHHHHHHHhhc--CCCCeEEEecCCCcccchhHhhcC
Q 047720 20 PREWYSMLASLT--THHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 20 p~~l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.+++...+...+ .+..+|||||||+|..+..|++..
T Consensus 63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~ 100 (212)
T PRK00312 63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV 100 (212)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh
Confidence 345556666544 366899999999999998888653
No 68
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.48 E-value=0.0027 Score=47.56 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcC-CCCeEEEecCCCcccchhHhh
Q 047720 21 REWYSMLASLTT-HHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 21 ~~l~~~l~~~~~-~~~~~~Dig~GtG~~~~~L~~ 53 (126)
..+++.+.+.++ ....+||+|||+|..+..++.
T Consensus 74 ~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~ 107 (251)
T TIGR03534 74 EELVEAALERLKKGPLRVLDLGTGSGAIALALAK 107 (251)
T ss_pred HHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHH
Confidence 446666666654 345899999999999988883
No 69
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.46 E-value=0.0018 Score=47.15 Aligned_cols=24 Identities=13% Similarity=-0.078 Sum_probs=19.9
Q ss_pred cCCCCeEEEecCCCcccchhHhhc
Q 047720 31 TTHHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 31 ~~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
+.+..+|||+|||||.++..++..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~ 53 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQ 53 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHH
Confidence 457789999999999988877743
No 70
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.0024 Score=47.67 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=23.1
Q ss_pred hHHHHHHHHhh--c-C--CCCeEEEecCCCcccchhHh
Q 047720 20 PREWYSMLASL--T-T--HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 20 p~~l~~~l~~~--~-~--~~~~~~Dig~GtG~~~~~L~ 52 (126)
|.++...|+.. . + ...+|+|+|||||.++...+
T Consensus 27 p~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~ 64 (198)
T COG2263 27 PAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAA 64 (198)
T ss_pred ChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHH
Confidence 55555555432 2 2 45679999999999998777
No 71
>PRK04266 fibrillarin; Provisional
Probab=96.42 E-value=0.0023 Score=48.59 Aligned_cols=23 Identities=13% Similarity=-0.032 Sum_probs=20.0
Q ss_pred CCCCeEEEecCCCcccchhHhhc
Q 047720 32 THHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
.+..+|+|+|||||..+..|++.
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~ 93 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDI 93 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHh
Confidence 36789999999999999999854
No 72
>PRK06922 hypothetical protein; Provisional
Probab=96.42 E-value=0.0014 Score=56.91 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=29.2
Q ss_pred hhhhHHHHHHhhhCC--CCh------HHHHHHHHhhcCCCCeEEEecCCCcccchhHh
Q 047720 3 RLFNKQAKLYLDARP--TYP------REWYSMLASLTTHHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 3 ~~F~~~a~~Y~~~Rp--~yp------~~l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~ 52 (126)
+.|+...+.|+++.. .|. ......+.... +..+|||||||||..+..|+
T Consensus 381 d~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d~~-~g~rVLDIGCGTG~ls~~LA 437 (677)
T PRK06922 381 DFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILDYI-KGDTIVDVGAGGGVMLDMIE 437 (677)
T ss_pred HHhccChhhHhHHHhHHHHHHhccccHHHHHHHhhhc-CCCEEEEeCCCCCHHHHHHH
Confidence 445555556665541 222 12222233333 46799999999999888776
No 73
>PLN02244 tocopherol O-methyltransferase
Probab=96.41 E-value=0.0032 Score=50.27 Aligned_cols=21 Identities=19% Similarity=0.093 Sum_probs=18.2
Q ss_pred CCCeEEEecCCCcccchhHhh
Q 047720 33 HHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~ 53 (126)
+..+|||||||+|..+..|++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~ 138 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLAR 138 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHH
Confidence 457899999999999988884
No 74
>PRK08317 hypothetical protein; Provisional
Probab=96.37 E-value=0.004 Score=45.71 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=21.4
Q ss_pred HHHHHhhc--CCCCeEEEecCCCcccchhHh
Q 047720 24 YSMLASLT--THHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 24 ~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~ 52 (126)
.+.+.... .+..+|||||||+|..+..++
T Consensus 8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a 38 (241)
T PRK08317 8 RARTFELLAVQPGDRVLDVGCGPGNDARELA 38 (241)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHH
Confidence 34444433 456799999999999888776
No 75
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=96.34 E-value=0.0015 Score=42.74 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=15.3
Q ss_pred EEEecCCCcccchhHhhcC
Q 047720 37 AWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 37 ~~Dig~GtG~~~~~L~~~~ 55 (126)
|||+|||+|..++.|++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~ 19 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF 19 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS
T ss_pred CEEeecCCcHHHHHHHHHh
Confidence 6899999999999999664
No 76
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.33 E-value=0.0021 Score=49.04 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.4
Q ss_pred CCCeEEEecCCCcccchhHhhcC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+...+||+|||||.+|..|++.|
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g 97 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG 97 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC
Confidence 55689999999999999999775
No 77
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=96.32 E-value=0.0018 Score=41.99 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=13.7
Q ss_pred EEecCCCcccchhHhhc
Q 047720 38 WDAGMGNGQAALGVRFE 54 (126)
Q Consensus 38 ~Dig~GtG~~~~~L~~~ 54 (126)
||||||||.++..|.+.
T Consensus 1 LdiGcG~G~~~~~l~~~ 17 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEE 17 (99)
T ss_dssp -EESTTTS-TTTTHHHH
T ss_pred CEeCccChHHHHHHHHh
Confidence 79999999999999855
No 78
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=96.30 E-value=0.0044 Score=47.74 Aligned_cols=21 Identities=19% Similarity=0.223 Sum_probs=18.5
Q ss_pred CCCCeEEEecCCCcccchhHh
Q 047720 32 THHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~ 52 (126)
++..+|||||||+|..+..|+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la 71 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYIN 71 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHH
Confidence 467899999999999988886
No 79
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=96.29 E-value=0.0025 Score=51.34 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=32.6
Q ss_pred hhHHHHHHhh-hCCC-ChHHHHHHHHhhc---CCCCeEEEecCCCcccchhHhh
Q 047720 5 FNKQAKLYLD-ARPT-YPREWYSMLASLT---THHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 5 F~~~a~~Y~~-~Rp~-yp~~l~~~l~~~~---~~~~~~~Dig~GtG~~~~~L~~ 53 (126)
|...|..|+. .+|. +.+.+.+.+.+.. .+..+|||||||||..+..+++
T Consensus 80 y~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~ 133 (340)
T PLN02490 80 YRFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVK 133 (340)
T ss_pred ccceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHH
Confidence 3455677776 3444 3445556555543 3567899999999998888764
No 80
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=96.22 E-value=0.0041 Score=48.99 Aligned_cols=35 Identities=9% Similarity=-0.017 Sum_probs=27.4
Q ss_pred HHHHHHHHhhc--CCCCeEEEecCCCcccchhHhhcC
Q 047720 21 REWYSMLASLT--THHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 21 ~~l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+.+.+.|+... .+...|||||||+|.+|..|++.+
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~ 58 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA 58 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC
Confidence 45667777654 366899999999999999998554
No 81
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=96.20 E-value=0.0052 Score=45.85 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=25.3
Q ss_pred hCCCChHHHHHHHHhhc---CCCCeEEEecCCCcccchhHh
Q 047720 15 ARPTYPREWYSMLASLT---THHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 15 ~Rp~yp~~l~~~l~~~~---~~~~~~~Dig~GtG~~~~~L~ 52 (126)
+||. .+.+.+.+.+.+ ....++||+|||||.++..++
T Consensus 33 ~Rp~-~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~l 72 (199)
T PRK10909 33 LRPT-TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEAL 72 (199)
T ss_pred cCcC-CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHH
Confidence 4777 455555454432 245789999999999998644
No 82
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.15 E-value=0.005 Score=47.88 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=23.6
Q ss_pred hHHHHHHHHhhc-C--CCCeEEEecCCCcccchhHh
Q 047720 20 PREWYSMLASLT-T--HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 20 p~~l~~~l~~~~-~--~~~~~~Dig~GtG~~~~~L~ 52 (126)
...+++.+.... + +..++||+|||||..+..|+
T Consensus 98 te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la 133 (284)
T TIGR00536 98 TEELVEKALASLISQNPILHILDLGTGSGCIALALA 133 (284)
T ss_pred cHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHH
Confidence 345666665443 2 22589999999999998888
No 83
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.0044 Score=48.49 Aligned_cols=39 Identities=26% Similarity=0.282 Sum_probs=26.6
Q ss_pred CCChHH-HHHHHHhhcCCCC-eEEEecCCCcccchhHhhcC
Q 047720 17 PTYPRE-WYSMLASLTTHHL-LAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 17 p~yp~~-l~~~l~~~~~~~~-~~~Dig~GtG~~~~~L~~~~ 55 (126)
|+...+ |++.+........ .|+|||||||-.+..|+.+.
T Consensus 92 Pr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~ 132 (280)
T COG2890 92 PRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEG 132 (280)
T ss_pred cCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhC
Confidence 555555 5565543333223 79999999999999999554
No 84
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.10 E-value=0.004 Score=50.80 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=21.2
Q ss_pred HHHhhcCC--CCeEEEecCCCcccchhHhhc
Q 047720 26 MLASLTTH--HLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 26 ~l~~~~~~--~~~~~Dig~GtG~~~~~L~~~ 54 (126)
.++++++. ..+|||||||||.++..|++.
T Consensus 219 llL~~lp~~~~~~VLDLGCGtGvi~i~la~~ 249 (378)
T PRK15001 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDK 249 (378)
T ss_pred HHHHhCCcccCCeEEEEeccccHHHHHHHHh
Confidence 34444442 358999999999999988843
No 85
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.08 E-value=0.014 Score=44.91 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=29.9
Q ss_pred hHHHHHHHHhhcC--CCCeEEEecCCCcccchhHhhcC
Q 047720 20 PREWYSMLASLTT--HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 20 p~~l~~~l~~~~~--~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.+.+.+.|++.+. +...|+|||+|+|.+|+.|++.+
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~ 52 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG 52 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc
Confidence 3567788887664 67899999999999999999776
No 86
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=96.05 E-value=0.0025 Score=40.01 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=15.3
Q ss_pred EEecCCCcccchhHhhc
Q 047720 38 WDAGMGNGQAALGVRFE 54 (126)
Q Consensus 38 ~Dig~GtG~~~~~L~~~ 54 (126)
||||||+|..+..|++.
T Consensus 1 LdiG~G~G~~~~~l~~~ 17 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR 17 (95)
T ss_dssp EEET-TTSHHHHHHHHT
T ss_pred CEecCcCCHHHHHHHhc
Confidence 79999999999999988
No 87
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.03 E-value=0.0061 Score=45.86 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=25.2
Q ss_pred HHHHHHHhhcCCCCe-EEEecCCCcccchhHh
Q 047720 22 EWYSMLASLTTHHLL-AWDAGMGNGQAALGVR 52 (126)
Q Consensus 22 ~l~~~l~~~~~~~~~-~~Dig~GtG~~~~~L~ 52 (126)
.+.+.|...++.... ||+|||||||-+..+|
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA 44 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFA 44 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHH
Confidence 356667777776665 9999999999999999
No 88
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=96.01 E-value=0.0056 Score=45.22 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=24.8
Q ss_pred hHHHHHHHHhhcC------CCCeEEEecCCCcccchhHhhc
Q 047720 20 PREWYSMLASLTT------HHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 20 p~~l~~~l~~~~~------~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
.+..+++|...+. ...++||+|||+|.++..++..
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~ 66 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL 66 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc
Confidence 4444566665443 3678999999999998888743
No 89
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.96 E-value=0.0062 Score=51.32 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=16.9
Q ss_pred CeEEEecCCCcccchhHhh
Q 047720 35 LLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 35 ~~~~Dig~GtG~~~~~L~~ 53 (126)
.+|||||||||.++..|+.
T Consensus 140 ~~VLDlG~GsG~iai~la~ 158 (506)
T PRK01544 140 LNILELGTGSGCIAISLLC 158 (506)
T ss_pred CEEEEccCchhHHHHHHHH
Confidence 5799999999999998873
No 90
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=95.95 E-value=0.0071 Score=49.27 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=22.2
Q ss_pred HHHhhc--CCCCeEEEecCCCcccchhHhhc
Q 047720 26 MLASLT--THHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 26 ~l~~~~--~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
.|++.. .+.+++||||||+|.++..+++.
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~ 188 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEH 188 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHH
Confidence 444443 46679999999999999988843
No 91
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=95.94 E-value=0.0072 Score=46.39 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=25.7
Q ss_pred CCChHH-HHHHHHhhcC---CCCeEEEecCCCcccchhHhhc
Q 047720 17 PTYPRE-WYSMLASLTT---HHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 17 p~yp~~-l~~~l~~~~~---~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
|+.+.+ +++.+..... ...++||+|||+|.++..|+..
T Consensus 66 pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~ 107 (251)
T TIGR03704 66 PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAA 107 (251)
T ss_pred CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHh
Confidence 443434 5566555432 2358999999999999998844
No 92
>PHA03411 putative methyltransferase; Provisional
Probab=95.93 E-value=0.0067 Score=47.66 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=23.9
Q ss_pred hHHHH-HHHHhhcCCCCeEEEecCCCcccchhHhhc
Q 047720 20 PREWY-SMLASLTTHHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 20 p~~l~-~~l~~~~~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
|..+. +.+.. .....+|||+|||+|.++..++..
T Consensus 51 P~~i~~~f~~~-~~~~grVLDLGcGsGilsl~la~r 85 (279)
T PHA03411 51 PEGLAWDFTID-AHCTGKVLDLCAGIGRLSFCMLHR 85 (279)
T ss_pred CHHHHHHHHhc-cccCCeEEEcCCCCCHHHHHHHHh
Confidence 66665 43322 223468999999999999888764
No 93
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=95.92 E-value=0.0063 Score=48.04 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=24.5
Q ss_pred HHHHHHHhhcC--CCCeEEEecCCCcccchhHhhcC
Q 047720 22 EWYSMLASLTT--HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 22 ~l~~~l~~~~~--~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.+++.+...+. +..+|||+|||+|.++..|++.+
T Consensus 160 ~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~ 195 (315)
T PRK03522 160 QLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG 195 (315)
T ss_pred HHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC
Confidence 34444444332 35789999999999999999654
No 94
>PHA03412 putative methyltransferase; Provisional
Probab=95.92 E-value=0.0054 Score=47.26 Aligned_cols=35 Identities=11% Similarity=-0.037 Sum_probs=25.6
Q ss_pred hHHHHHHHHhhcCCCCeEEEecCCCcccchhHhhc
Q 047720 20 PREWYSMLASLTTHHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 20 p~~l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
|..+...+........+|||+|||||.++..+++.
T Consensus 36 P~~iAr~~~i~~~~~grVLDlG~GSG~Lalala~~ 70 (241)
T PHA03412 36 PIGLARDFTIDACTSGSVVDLCAGIGGLSFAMVHM 70 (241)
T ss_pred CHHHHHHHHHhccCCCEEEEccChHHHHHHHHHHh
Confidence 66676665432223679999999999999888754
No 95
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=95.90 E-value=0.0077 Score=46.97 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=20.4
Q ss_pred HHHHhhc--CCCCeEEEecCCCcccchhHh
Q 047720 25 SMLASLT--THHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 25 ~~l~~~~--~~~~~~~Dig~GtG~~~~~L~ 52 (126)
+.+++++ .+.++|||||||-|-++..++
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a 81 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCGWGGLAIYAA 81 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-TTSHHHHHHH
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHH
Confidence 3555553 478899999999999999988
No 96
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=95.88 E-value=0.0088 Score=44.97 Aligned_cols=34 Identities=12% Similarity=-0.002 Sum_probs=23.7
Q ss_pred HHHHHHHhh--cCCCCeEEEecCCCcccchhHhhcC
Q 047720 22 EWYSMLASL--TTHHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 22 ~l~~~l~~~--~~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.++..+++. +.+.++|||||||||-.|..|+...
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lv 94 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLV 94 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhc
Confidence 445555554 3578999999999999999999653
No 97
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=95.88 E-value=0.0075 Score=49.78 Aligned_cols=35 Identities=11% Similarity=-0.038 Sum_probs=26.8
Q ss_pred HHHHHHHHhhcC--CCCeEEEecCCCcccchhHhhcC
Q 047720 21 REWYSMLASLTT--HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 21 ~~l~~~l~~~~~--~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+.+++.+.+.+. +...+||+|||||.++..|++.+
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~ 319 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA 319 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC
Confidence 346666666543 55799999999999999999654
No 98
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.86 E-value=0.0086 Score=45.62 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=24.4
Q ss_pred HHHHHHHHhhc--CCCCeEEEecCCCcccchhHhhc
Q 047720 21 REWYSMLASLT--THHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 21 ~~l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
+.+.+.+.... .+..++||+|||+|..+..|+..
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~ 129 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKE 129 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHH
Confidence 34566665433 35578999999999999888733
No 99
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.81 E-value=0.01 Score=43.58 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=18.0
Q ss_pred CCCCeEEEecCCCcccchhHh
Q 047720 32 THHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~ 52 (126)
.+...+||+|||||.++..++
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a 59 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEAS 59 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHH
Confidence 366899999999999888776
No 100
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.80 E-value=0.01 Score=46.37 Aligned_cols=24 Identities=17% Similarity=0.003 Sum_probs=20.8
Q ss_pred CCCCeEEEecCCCcccchhHhhcC
Q 047720 32 THHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.+..++||||||+|..+..+++..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~ 171 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHF 171 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHC
Confidence 356799999999999999999775
No 101
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=95.65 E-value=0.012 Score=45.94 Aligned_cols=34 Identities=15% Similarity=0.044 Sum_probs=23.3
Q ss_pred HHHHHHHHh-hc--CCCCeEEEecCCCcccchhHhhc
Q 047720 21 REWYSMLAS-LT--THHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 21 ~~l~~~l~~-~~--~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
.++++..+. .+ .+..++||+|||||..+..|+..
T Consensus 106 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~ 142 (284)
T TIGR03533 106 AELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYA 142 (284)
T ss_pred HHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHH
Confidence 344544433 33 23468999999999999998843
No 102
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=95.62 E-value=0.021 Score=42.04 Aligned_cols=24 Identities=17% Similarity=0.055 Sum_probs=20.5
Q ss_pred CCCeEEEecCCCcccchhHhhcCC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEGQ 56 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~~ 56 (126)
...++||++||||.++..++..|.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga 72 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA 72 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC
Confidence 457899999999999999987663
No 103
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.58 E-value=0.012 Score=46.61 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=17.6
Q ss_pred CeEEEecCCCcccchhHhhc
Q 047720 35 LLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 35 ~~~~Dig~GtG~~~~~L~~~ 54 (126)
.++||+|||+|..+..|+..
T Consensus 135 ~~VLDlG~GsG~iai~la~~ 154 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA 154 (307)
T ss_pred CEEEEEechhhHHHHHHHHH
Confidence 68999999999999988843
No 104
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=95.56 E-value=0.0071 Score=43.55 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=19.2
Q ss_pred CCCeEEEecCCCcccchhHhhcC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+..++||+|||+|..+..+++.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~ 41 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG 41 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC
Confidence 34679999999999999988544
No 105
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=95.48 E-value=0.014 Score=44.05 Aligned_cols=36 Identities=11% Similarity=-0.050 Sum_probs=26.1
Q ss_pred HHHHHHHHhh-cCCCCeEEEecCCCcccchhHhhcCC
Q 047720 21 REWYSMLASL-TTHHLLAWDAGMGNGQAALGVRFEGQ 56 (126)
Q Consensus 21 ~~l~~~l~~~-~~~~~~~~Dig~GtG~~~~~L~~~~~ 56 (126)
+.|.+++... .++..+|||+|||.|..+..||+.|.
T Consensus 24 ~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~ 60 (218)
T PRK13255 24 PLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH 60 (218)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC
Confidence 3344444332 34567999999999999999997773
No 106
>PRK14968 putative methyltransferase; Provisional
Probab=95.47 E-value=0.012 Score=42.04 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=19.3
Q ss_pred CCCCeEEEecCCCcccchhHhhc
Q 047720 32 THHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
.+..++||+|||+|..+..|+..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~ 44 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN 44 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh
Confidence 35678999999999999988844
No 107
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.41 E-value=0.015 Score=46.39 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=26.0
Q ss_pred HHHHHHHHhhc--CCCCeEEEecCCCcccchhHhhcC
Q 047720 21 REWYSMLASLT--THHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 21 ~~l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+.+...+...+ .+..+|||||||||-.+..|++..
T Consensus 66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~ 102 (322)
T PRK13943 66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVV 102 (322)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhc
Confidence 44555555543 466899999999999999998643
No 108
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=95.40 E-value=0.016 Score=46.03 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=18.9
Q ss_pred CeEEEecCCCcccchhHhhcC
Q 047720 35 LLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 35 ~~~~Dig~GtG~~~~~L~~~~ 55 (126)
..|+|+|||.|-++..|++..
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~~ 180 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKKS 180 (300)
T ss_pred CcEEEeCCCccHHHHHHHHhC
Confidence 489999999999999999765
No 109
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=95.34 E-value=0.012 Score=47.24 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=17.9
Q ss_pred CCeEEEecCCCcccchhHhhc
Q 047720 34 HLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 34 ~~~~~Dig~GtG~~~~~L~~~ 54 (126)
..+|||+|||+|.++..+++.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~ 217 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARH 217 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHh
Confidence 457999999999999988843
No 110
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=95.33 E-value=0.012 Score=48.29 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=19.8
Q ss_pred CCCeEEEecCCCcccchhHhhcC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
....+||||||+|.++..+|...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~ 144 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNN 144 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhC
Confidence 45689999999999999999553
No 111
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=95.31 E-value=0.012 Score=48.71 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=18.6
Q ss_pred CCCCeEEEecCCCcccchhHhh
Q 047720 32 THHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~~ 53 (126)
.+..+|||||||+|..+..|++
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~ 286 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAE 286 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHH
Confidence 4567999999999998888873
No 112
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=95.30 E-value=0.014 Score=48.33 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=19.1
Q ss_pred CCCeEEEecCCCcccchhHhhc
Q 047720 33 HHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
+...+||||||+|..+..|++.
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~ 58 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK 58 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh
Confidence 4568999999999999999854
No 113
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=95.16 E-value=0.016 Score=46.92 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=23.5
Q ss_pred HHHHHHhhcC--CCCeEEEecCCCcccchhHhhcC
Q 047720 23 WYSMLASLTT--HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 23 l~~~l~~~~~--~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+++.+...+. ...++||++||+|.++..|+..+
T Consensus 221 l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~ 255 (374)
T TIGR02085 221 LYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD 255 (374)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC
Confidence 4444444332 34689999999999999999554
No 114
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=95.08 E-value=0.023 Score=44.98 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=27.0
Q ss_pred hHHHHHHHHhhcC-----CCCeEEEecCCCcccchhHhhcC
Q 047720 20 PREWYSMLASLTT-----HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 20 p~~l~~~l~~~~~-----~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
-+++++.+++.++ .+..++|+|||||-.+..|++..
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L 170 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL 170 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC
Confidence 4567888876543 44579999999999888888444
No 115
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=95.06 E-value=0.014 Score=47.94 Aligned_cols=39 Identities=15% Similarity=0.022 Sum_probs=29.0
Q ss_pred CCChHHHHHHHHhhc--CCCCeEEEecCCCcccchhHhhcC
Q 047720 17 PTYPREWYSMLASLT--THHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 17 p~yp~~l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
|.....+++.+...+ .+..++||+|||+|.++..|++..
T Consensus 274 ~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~ 314 (431)
T TIGR00479 274 SGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA 314 (431)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC
Confidence 334556677666654 355789999999999999999654
No 116
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=95.04 E-value=0.045 Score=40.75 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=22.1
Q ss_pred HHHHHhhc--CCCCeEEEecCCCcccchhHhhc
Q 047720 24 YSMLASLT--THHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 24 ~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
++++.... .+...+||||||+|.++..+++.
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~ 69 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARL 69 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc
Confidence 34554443 25678999999999988877744
No 117
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=95.02 E-value=0.021 Score=45.57 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=24.7
Q ss_pred HHHHhhcC--CCCeEEEecCCCcccchhHhhcCC
Q 047720 25 SMLASLTT--HHLLAWDAGMGNGQAALGVRFEGQ 56 (126)
Q Consensus 25 ~~l~~~~~--~~~~~~Dig~GtG~~~~~L~~~~~ 56 (126)
+.|..+++ .+.+|+|||||+|-.+..++..|.
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA 138 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA 138 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC
Confidence 34555553 567999999999999988887773
No 118
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.01 E-value=0.019 Score=45.21 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=21.8
Q ss_pred HHHhh--cCCCCeEEEecCCCcccchhHh
Q 047720 26 MLASL--TTHHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 26 ~l~~~--~~~~~~~~Dig~GtG~~~~~L~ 52 (126)
.++++ +.+.+++||||||=|-+++-+|
T Consensus 63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA 91 (283)
T COG2230 63 LILEKLGLKPGMTLLDIGCGWGGLAIYAA 91 (283)
T ss_pred HHHHhcCCCCCCEEEEeCCChhHHHHHHH
Confidence 44444 3588999999999999888888
No 119
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=94.97 E-value=0.0094 Score=46.07 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=15.3
Q ss_pred CCeEEEecCCCccc----chhHhhc
Q 047720 34 HLLAWDAGMGNGQA----ALGVRFE 54 (126)
Q Consensus 34 ~~~~~Dig~GtG~~----~~~L~~~ 54 (126)
..+|||+|||||.- +..|++.
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~ 124 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAET 124 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHH
Confidence 46899999999984 4444443
No 120
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=94.95 E-value=0.013 Score=43.28 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=16.6
Q ss_pred eEEEecCCCcccchhHhhc
Q 047720 36 LAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 36 ~~~Dig~GtG~~~~~L~~~ 54 (126)
+|||||||+|..+..+++.
T Consensus 2 ~vLDiGcG~G~~~~~la~~ 20 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAER 20 (224)
T ss_pred eEEEECCCCCHHHHHHHHH
Confidence 6899999999988888754
No 121
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=94.87 E-value=0.033 Score=43.38 Aligned_cols=34 Identities=9% Similarity=-0.024 Sum_probs=27.2
Q ss_pred HHHHHHHhhcC--CCCeEEEecCCCcccchhHhhcC
Q 047720 22 EWYSMLASLTT--HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 22 ~l~~~l~~~~~--~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.+++.|.+... +++.||+||+|.|-+|..|++.+
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~ 52 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA 52 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc
Confidence 35667776543 56899999999999999999665
No 122
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=94.86 E-value=0.015 Score=46.97 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=16.6
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
.+..|+|||||||.++.-=|
T Consensus 60 ~dK~VlDVGcGtGILS~F~a 79 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAA 79 (346)
T ss_pred CCCEEEEcCCCccHHHHHHH
Confidence 56789999999998876555
No 123
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=94.79 E-value=0.014 Score=36.03 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=16.3
Q ss_pred eEEEecCCCcccchhHhh
Q 047720 36 LAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 36 ~~~Dig~GtG~~~~~L~~ 53 (126)
+++|+|||+|..+..++.
T Consensus 1 ~ildig~G~G~~~~~~~~ 18 (107)
T cd02440 1 RVLDLGCGTGALALALAS 18 (107)
T ss_pred CeEEEcCCccHHHHHHhc
Confidence 479999999999999987
No 124
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=94.79 E-value=0.027 Score=43.62 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=18.5
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
...+|+|||||+|.++..||
T Consensus 44 ~~~~IlDlGaG~G~l~L~la 63 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLA 63 (248)
T ss_pred cCCeEEEecCCcCHHHHHHh
Confidence 57899999999999999998
No 125
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=94.79 E-value=0.024 Score=45.64 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=25.2
Q ss_pred HHHHHHHHhhcC-CCCeEEEecCCCcccchhHhhc
Q 047720 21 REWYSMLASLTT-HHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 21 ~~l~~~l~~~~~-~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
..+++.+.+... ....+||++||+|.++..|+..
T Consensus 184 ~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~ 218 (353)
T TIGR02143 184 IKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQN 218 (353)
T ss_pred HHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHh
Confidence 455666666553 2346999999999999999854
No 126
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=94.75 E-value=0.026 Score=45.59 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=26.2
Q ss_pred HHHHHHHHhhcC-CCCeEEEecCCCcccchhHhhc
Q 047720 21 REWYSMLASLTT-HHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 21 ~~l~~~l~~~~~-~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
+.+++.+.+.+. ....+||++||+|.++..|+..
T Consensus 193 e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~ 227 (362)
T PRK05031 193 EKMLEWALDATKGSKGDLLELYCGNGNFTLALARN 227 (362)
T ss_pred HHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh
Confidence 457777776554 2357999999999999999854
No 127
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=94.62 E-value=0.022 Score=43.62 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=16.8
Q ss_pred CCCCeEEEecCCCcccchhHh
Q 047720 32 THHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~ 52 (126)
.+..+|||||||+|..+..++
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a 96 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAA 96 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHH
Confidence 366899999999998766554
No 128
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.53 E-value=0.049 Score=40.72 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=35.0
Q ss_pred CCeEEEecCCCcccchhHhhcCCCcceeecceeCHHHHHHhHhh
Q 047720 34 HLLAWDAGMGNGQAALGVRFEGQPLELDMPKEVSFEGFLRMLRS 77 (126)
Q Consensus 34 ~~~~~Dig~GtG~~~~~L~~~~~~~~~~i~~~~tl~~l~gYl~T 77 (126)
...++|||||||-++..|+....|+.+.+...++-...--=++|
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~T 87 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLET 87 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHH
Confidence 56799999999999999997777878888888877766554433
No 129
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=94.45 E-value=0.05 Score=45.38 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=29.4
Q ss_pred hhhHHHHHHhhhCCCChHHHHHHHHhhcCC------CCeEEEecCCCcccchhHh
Q 047720 4 LFNKQAKLYLDARPTYPREWYSMLASLTTH------HLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 4 ~F~~~a~~Y~~~Rp~yp~~l~~~l~~~~~~------~~~~~Dig~GtG~~~~~L~ 52 (126)
.|+.....|+.| =.++.+.|.+.... ...|+|||||+|.++..-+
T Consensus 155 ~fE~D~vKY~~Y----e~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al 205 (448)
T PF05185_consen 155 VFEKDPVKYDQY----ERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFAL 205 (448)
T ss_dssp HHCC-HHHHHHH----HHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHH
T ss_pred hHhcCHHHHHHH----HHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHH
Confidence 577777778775 34666777765442 4679999999998875444
No 130
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.041 Score=41.57 Aligned_cols=32 Identities=16% Similarity=0.039 Sum_probs=24.6
Q ss_pred HHHHHhhc--CCCCeEEEecCCCcccchhHhhcC
Q 047720 24 YSMLASLT--THHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 24 ~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
...+.+.+ .++++||+||||||-.|..||+..
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~ 94 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV 94 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh
Confidence 33444433 477999999999999999999765
No 131
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=94.06 E-value=0.057 Score=42.66 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=28.1
Q ss_pred HHHHHHHHhh--cCCCCeEEEecCCCcccchhHhhcC
Q 047720 21 REWYSMLASL--TTHHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 21 ~~l~~~l~~~--~~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+.+.+.|++. +.+.+.||+||-|||.+|..|.+.|
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~ 80 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG 80 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc
Confidence 5677777765 4578899999999999999998444
No 132
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=94.04 E-value=0.028 Score=37.04 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=18.9
Q ss_pred CeEEEecCCCcccchhHhhcC
Q 047720 35 LLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 35 ~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.+|+|+|||+|.++..+++.+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~ 22 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG 22 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC
T ss_pred CEEEEcCcchHHHHHHHHHHC
Confidence 479999999999999998777
No 133
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=93.98 E-value=0.044 Score=38.25 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=19.2
Q ss_pred CCCeEEEecCCCcccchhHhh
Q 047720 33 HHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~ 53 (126)
+...++|+|||.|-+++.|+.
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHH
Confidence 567899999999999999997
No 134
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=93.94 E-value=0.047 Score=39.53 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=18.4
Q ss_pred CCCeEEEecCCCcccchhHhhc
Q 047720 33 HHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
...+|++||||+|..+..++..
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~ 66 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKL 66 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT
T ss_pred CCceEEEECCccchhHHHHHhc
Confidence 5679999999999999988866
No 135
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=93.81 E-value=0.04 Score=42.05 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=19.1
Q ss_pred ChHHHHHHHHhhcCCC--CeEEEecCCCccc
Q 047720 19 YPREWYSMLASLTTHH--LLAWDAGMGNGQA 47 (126)
Q Consensus 19 yp~~l~~~l~~~~~~~--~~~~Dig~GtG~~ 47 (126)
|-.++|.-|...+.++ ..+|+||||||..
T Consensus 60 ykrelFs~i~~~~gk~~K~~vLEvgcGtG~N 90 (252)
T KOG4300|consen 60 YKRELFSGIYYFLGKSGKGDVLEVGCGTGAN 90 (252)
T ss_pred HHHHHHhhhHHHhcccCccceEEecccCCCC
Confidence 3446777666555433 4579999999943
No 136
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=93.72 E-value=0.063 Score=41.45 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=23.4
Q ss_pred HHHHhhhCCCChHHHHH----HHHhh--cCCCCeEEEecCCCcccchhHh
Q 047720 9 AKLYLDARPTYPREWYS----MLASL--TTHHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 9 a~~Y~~~Rp~yp~~l~~----~l~~~--~~~~~~~~Dig~GtG~~~~~L~ 52 (126)
-+.|...-|+=++-+|. .|+.. +.+.++|++.|+|+|-+|..|+
T Consensus 10 ~e~~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~ 59 (247)
T PF08704_consen 10 PELWTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALA 59 (247)
T ss_dssp HHHHHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHH
T ss_pred HHHHHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHH
Confidence 34555555543333332 33333 4588999999999999999998
No 137
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=93.68 E-value=0.032 Score=41.33 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=18.3
Q ss_pred CCeEEEecCCCcccchhHhhcC
Q 047720 34 HLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 34 ~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
...+||||||.|.....+|.+-
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~ 39 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRN 39 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHS
T ss_pred CCeEEEecCCCCHHHHHHHHHC
Confidence 3489999999999999999664
No 138
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.66 E-value=0.05 Score=45.93 Aligned_cols=20 Identities=20% Similarity=0.049 Sum_probs=17.1
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
.-..+||||||+|.++..|.
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~ 136 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLL 136 (506)
T ss_pred ceEEEEeccceeehhHHHHh
Confidence 34679999999999988887
No 139
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=93.50 E-value=0.078 Score=42.05 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=23.4
Q ss_pred HHHHHHHHhh--cCCCCeEEEecCCCcccchhHhh
Q 047720 21 REWYSMLASL--TTHHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 21 ~~l~~~l~~~--~~~~~~~~Dig~GtG~~~~~L~~ 53 (126)
+.+...++.. .++...++|+|||||.++...+.
T Consensus 168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~ 202 (329)
T TIGR01177 168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGL 202 (329)
T ss_pred HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHH
Confidence 3455555543 34677999999999988877663
No 140
>PRK00811 spermidine synthase; Provisional
Probab=93.39 E-value=0.065 Score=41.80 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=19.5
Q ss_pred CCCCeEEEecCCCcccchhHhhc
Q 047720 32 THHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
+...+|||||||+|.+++.+++.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~ 97 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH 97 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC
Confidence 45678999999999999988754
No 141
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=93.38 E-value=0.094 Score=39.34 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=19.4
Q ss_pred HHHHHHhhc--CCCCeEEEecCCCcccchhHh
Q 047720 23 WYSMLASLT--THHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 23 l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~ 52 (126)
.+..|...+ .+.+..+|||||.|++....|
T Consensus 30 ~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aa 61 (205)
T PF08123_consen 30 FVSKILDELNLTPDDVFYDLGSGVGNVVFQAA 61 (205)
T ss_dssp HHHHHHHHTT--TT-EEEEES-TTSHHHHHHH
T ss_pred HHHHHHHHhCCCCCCEEEECCCCCCHHHHHHH
Confidence 344444444 467899999999999877666
No 142
>PTZ00146 fibrillarin; Provisional
Probab=93.23 E-value=0.056 Score=42.81 Aligned_cols=42 Identities=12% Similarity=-0.018 Sum_probs=28.8
Q ss_pred HhhhCCCChHHHHHHHHh-----hcCCCCeEEEecCCCcccchhHhhc
Q 047720 12 YLDARPTYPREWYSMLAS-----LTTHHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 12 Y~~~Rp~yp~~l~~~l~~-----~~~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
|.-+-|... .|...|.. .+.+.++|||||||||..+..|++.
T Consensus 107 yR~w~p~rS-Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdi 153 (293)
T PTZ00146 107 YRVWNPFRS-KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDL 153 (293)
T ss_pred eeeeCCccc-HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHH
Confidence 555555433 45544433 1346789999999999999999854
No 143
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.13 E-value=0.061 Score=41.71 Aligned_cols=101 Identities=21% Similarity=0.154 Sum_probs=49.4
Q ss_pred hHHHHHHHHhhcCCCCeEEEecCCCcccchhHhhcCCCcceeecceeCHHHHHHhHhhHHHHHHHHHh----------CC
Q 047720 20 PREWYSMLASLTTHHLLAWDAGMGNGQAALGVRFEGQPLELDMPKEVSFEGFLRMLRSFSAVNTAVEQ----------GV 89 (126)
Q Consensus 20 p~~l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~~~~~~~~~~i~~~~tl~~l~gYl~TWSay~~~~~~----------g~ 89 (126)
=+++|+.+.+.++...+|+|||||-=-++......... -..+-..+. .+++++|+..++.-.+..+ +.
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~-a~Y~a~DID-~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~ 169 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPG-ATYIAYDID-SQLVEFLNAFLAVLGVPHDARVRDLLSDPPK 169 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT--EEEEEESB-HHHHHHHHHHHHHTT-CEEEEEE-TTTSHTT
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCC-cEEEEEeCC-HHHHHHHHHHHHhhCCCcceeEeeeeccCCC
Confidence 35677777777777899999999987777766544311 122222222 3566666666655533221 11
Q ss_pred ---Cc--------chHHH----HHHHHHHhCCCCcEEEEEEEEEEEEeee
Q 047720 90 ---DL--------LSEKV----VKELETAWGGSELVRTIIYKTFMLVGKV 124 (126)
Q Consensus 90 ---d~--------l~e~~----~~~l~~~wg~~~~~~~v~wp~f~~~gr~ 124 (126)
|+ +-|+. -.++.+.+..+ .+.|+||+.=+-||.
T Consensus 170 ~~~DlaLllK~lp~le~q~~g~g~~ll~~~~~~--~~vVSfPtrSL~gR~ 217 (251)
T PF07091_consen 170 EPADLALLLKTLPCLERQRRGAGLELLDALRSP--HVVVSFPTRSLGGRN 217 (251)
T ss_dssp SEESEEEEET-HHHHHHHSTTHHHHHHHHSCES--EEEEEEES-------
T ss_pred CCcchhhHHHHHHHHHHHhcchHHHHHHHhCCC--eEEEeccccccccCc
Confidence 21 11122 13455666553 578999998887763
No 144
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=92.95 E-value=0.05 Score=40.87 Aligned_cols=19 Identities=16% Similarity=0.057 Sum_probs=15.6
Q ss_pred CCeEEEecCCCcccchhHh
Q 047720 34 HLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 34 ~~~~~Dig~GtG~~~~~L~ 52 (126)
-..++|+|||+|.+|..||
T Consensus 44 y~~alEvGCs~G~lT~~LA 62 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLA 62 (201)
T ss_dssp EEEEEEE--TTSHHHHHHG
T ss_pred cceeEecCCCccHHHHHHH
Confidence 3689999999999999999
No 145
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=92.66 E-value=0.12 Score=39.21 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=29.8
Q ss_pred hhhHHHHHHhhhCCCChHHHHHHHHhhc---CCCCeEEEecCCCcccchhHh
Q 047720 4 LFNKQAKLYLDARPTYPREWYSMLASLT---THHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 4 ~F~~~a~~Y~~~Rp~yp~~l~~~l~~~~---~~~~~~~Dig~GtG~~~~~L~ 52 (126)
.|...-+-|.+-.-..|.--++.|++.+ ++...|.|+|||-++++..+.
T Consensus 40 ~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~ 91 (219)
T PF05148_consen 40 LFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP 91 (219)
T ss_dssp HHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc
Confidence 4555556666666667777777777654 345688999999999997765
No 146
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=92.61 E-value=0.083 Score=41.07 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=26.6
Q ss_pred CCChHHHHHHHHhh-cCCCCeEEEecCCCcccchhHh
Q 047720 17 PTYPREWYSMLASL-TTHHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 17 p~yp~~l~~~l~~~-~~~~~~~~Dig~GtG~~~~~L~ 52 (126)
+-||.+....+... +.+.++|+|.|+|||.+|..||
T Consensus 77 iIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La 113 (256)
T COG2519 77 IIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLA 113 (256)
T ss_pred eecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHH
Confidence 34666554433332 4588999999999999999999
No 147
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.50 E-value=0.046 Score=39.66 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=27.4
Q ss_pred HHHhhhCCCChHHHHHHHHhhcC--CCCeEEEecCCCcccchhHh
Q 047720 10 KLYLDARPTYPREWYSMLASLTT--HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 10 ~~Y~~~Rp~yp~~l~~~l~~~~~--~~~~~~Dig~GtG~~~~~L~ 52 (126)
+.|.. ||.--......|-+..+ .+..+.|+|||+|.++.+.+
T Consensus 24 EQY~T-~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~s 67 (185)
T KOG3420|consen 24 EQYPT-RPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFS 67 (185)
T ss_pred hhCCC-cHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhh
Confidence 44533 55444444455555444 56788999999999986666
No 148
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=92.30 E-value=0.065 Score=42.89 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=15.8
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
...++||||||+|-+...|+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa 133 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIG 133 (321)
T ss_pred CCceEEEecCCccHHHHHHH
Confidence 45789999999996666665
No 149
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=92.07 E-value=0.15 Score=38.90 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=31.4
Q ss_pred HHHHHHhhhCCCChHHHHHH---HHhhcC-C-CCeEEEecCCCcccchhHhhcC
Q 047720 7 KQAKLYLDARPTYPREWYSM---LASLTT-H-HLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 7 ~~a~~Y~~~Rp~yp~~l~~~---l~~~~~-~-~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.+.......=|.|+.+.-+. +.+..+ . ...++|||||.|.+...+|...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~n 70 (227)
T COG0220 17 AQKNALEDNWPRLGLDPQEEPGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKN 70 (227)
T ss_pred HHHHHHHhcccccCCChhhccchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHC
Confidence 34455555556555544332 222333 2 3689999999999999999665
No 150
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=91.70 E-value=0.08 Score=36.23 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=17.3
Q ss_pred eEEEecCCCcccchhHhhcC
Q 047720 36 LAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 36 ~~~Dig~GtG~~~~~L~~~~ 55 (126)
+++|||||+|..+..++..+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~ 20 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG 20 (143)
T ss_pred CEEEccCCccHHHHHHHHhC
Confidence 47999999999999988654
No 151
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=91.65 E-value=0.26 Score=37.34 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=17.3
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
+..++||||||+|-.+..|+
T Consensus 68 ~~~~vLEiGt~~G~s~l~la 87 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTA 87 (234)
T ss_pred CCCEEEEecCcccHHHHHHH
Confidence 56789999999999888776
No 152
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=91.61 E-value=0.11 Score=42.69 Aligned_cols=21 Identities=14% Similarity=-0.023 Sum_probs=18.2
Q ss_pred CCCeEEEecCCCcccchhHhh
Q 047720 33 HHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~ 53 (126)
+..+|||+|||+|-.|..+++
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~ 264 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILE 264 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHH
Confidence 567899999999999888873
No 153
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.34 E-value=0.15 Score=38.98 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=26.8
Q ss_pred HHHHHHHHhhcCCCCeEEEecCCCcccchhHh
Q 047720 21 REWYSMLASLTTHHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 21 ~~l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~ 52 (126)
.++++.|..++.+...+||||.|||-+|.-++
T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~ 101 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFA 101 (237)
T ss_pred HHHHHHHHHhhccCcceeecCCCccHHHHHHH
Confidence 45677787777788899999999999888777
No 154
>PRK03612 spermidine synthase; Provisional
Probab=91.33 E-value=0.19 Score=42.59 Aligned_cols=36 Identities=17% Similarity=0.035 Sum_probs=24.7
Q ss_pred ChHHHHHHHHhhcCCCCeEEEecCCCcccchhHhhc
Q 047720 19 YPREWYSMLASLTTHHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 19 yp~~l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
|...+..-.....++..+|+|||||+|..++.+++.
T Consensus 283 y~e~l~~~~l~~~~~~~rVL~IG~G~G~~~~~ll~~ 318 (521)
T PRK03612 283 YHEALVHPAMAASARPRRVLVLGGGDGLALREVLKY 318 (521)
T ss_pred HHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhC
Confidence 444444322223456678999999999999988854
No 155
>PLN02672 methionine S-methyltransferase
Probab=91.25 E-value=0.15 Score=46.87 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=18.9
Q ss_pred CeEEEecCCCcccchhHhhcC
Q 047720 35 LLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 35 ~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.+|||||||||-++..|++..
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~ 140 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKW 140 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHC
Confidence 589999999999999999765
No 156
>PLN02366 spermidine synthase
Probab=91.07 E-value=0.2 Score=39.76 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=20.4
Q ss_pred cCCCCeEEEecCCCcccchhHhhc
Q 047720 31 TTHHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 31 ~~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
.+...+||+||||+|.+++.+++.
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~ 112 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARH 112 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC
Confidence 356789999999999999999854
No 157
>PRK01581 speE spermidine synthase; Validated
Probab=90.98 E-value=0.19 Score=41.15 Aligned_cols=36 Identities=19% Similarity=0.039 Sum_probs=26.1
Q ss_pred ChHHHHHHHHhhcCCCCeEEEecCCCcccchhHhhc
Q 047720 19 YPREWYSMLASLTTHHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 19 yp~~l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
|.+.+..-.....+...+||+||||+|-+++.+.+.
T Consensus 136 YHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~ 171 (374)
T PRK01581 136 YHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKY 171 (374)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhc
Confidence 555566544444556679999999999988887743
No 158
>PRK04457 spermidine synthase; Provisional
Probab=90.73 E-value=0.14 Score=39.52 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=18.1
Q ss_pred CCCCeEEEecCCCcccchhHh
Q 047720 32 THHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~ 52 (126)
+...+|||||||+|.++..++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~ 85 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIY 85 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHH
Confidence 345789999999999998887
No 159
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=90.69 E-value=0.46 Score=38.98 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=17.6
Q ss_pred CCCeEEEecCCCcccchhHhhcC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
....|||||||+|.++.--+..|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG 199 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG 199 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC
Confidence 45789999999998886655333
No 160
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=90.25 E-value=0.21 Score=37.49 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=19.4
Q ss_pred CCCCeEEEecCCCcccchhHhhcC
Q 047720 32 THHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.+..+++|||+|+|..+..++..-
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~ 122 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAY 122 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHS
T ss_pred cCccEEEeccCcchHHHHHHHHHC
Confidence 356789999999999999999653
No 161
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=90.19 E-value=0.18 Score=39.42 Aligned_cols=42 Identities=19% Similarity=0.111 Sum_probs=26.7
Q ss_pred HHhhhCC--CChHHHHHHHHhhcCCCCeEEEecCCCcccchhHh
Q 047720 11 LYLDARP--TYPREWYSMLASLTTHHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 11 ~Y~~~Rp--~yp~~l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~ 52 (126)
+|-.+|- .-++.....|.+---.+..+|||||-+|.+|..+|
T Consensus 34 ~YY~~r~~~~~~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~ia 77 (288)
T KOG2899|consen 34 NYYGFRLNPGDSDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIA 77 (288)
T ss_pred chhhcccCCCCCChhhhhccccccCcceeEeccCCcchhHHHHH
Confidence 3445551 22333344442222356789999999999999999
No 162
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=90.09 E-value=0.25 Score=38.08 Aligned_cols=23 Identities=17% Similarity=0.055 Sum_probs=18.3
Q ss_pred CCCCeEEEecCCCcccchhHhhc
Q 047720 32 THHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
+...+||+||||+|.+++.+++.
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~ 93 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKH 93 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhC
Confidence 34459999999999988877643
No 163
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=90.03 E-value=0.33 Score=40.18 Aligned_cols=20 Identities=10% Similarity=-0.085 Sum_probs=16.4
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
+...|||+|||+|-.|..++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la 269 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMA 269 (445)
T ss_pred CCCEEEEECCCCCHHHHHHH
Confidence 56789999999997776655
No 164
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=89.80 E-value=0.35 Score=37.19 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=17.4
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
+..+|||+|||+|-.|..|+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la 90 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQIS 90 (264)
T ss_pred CcCEEEEECCCchHHHHHHH
Confidence 56789999999998888776
No 165
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=89.68 E-value=0.66 Score=35.38 Aligned_cols=37 Identities=11% Similarity=-0.041 Sum_probs=28.5
Q ss_pred hHHHHHHHHhhc-CCCCeEEEecCCCcccchhHhhcCC
Q 047720 20 PREWYSMLASLT-THHLLAWDAGMGNGQAALGVRFEGQ 56 (126)
Q Consensus 20 p~~l~~~l~~~~-~~~~~~~Dig~GtG~~~~~L~~~~~ 56 (126)
.+-|.+++.... ++..+|++.|||.|.-+.-||+.|.
T Consensus 29 np~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~ 66 (226)
T PRK13256 29 NEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV 66 (226)
T ss_pred CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC
Confidence 455556665543 3557999999999999999998875
No 166
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=89.68 E-value=0.3 Score=37.95 Aligned_cols=29 Identities=28% Similarity=0.239 Sum_probs=19.6
Q ss_pred HHHHHhhcC--CCCeEEEecCCCcccchhHh
Q 047720 24 YSMLASLTT--HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 24 ~~~l~~~~~--~~~~~~Dig~GtG~~~~~L~ 52 (126)
++.|....+ ...++||+|||+|.++-...
T Consensus 22 l~El~~r~p~f~P~~vLD~GsGpGta~wAa~ 52 (274)
T PF09243_consen 22 LSELRKRLPDFRPRSVLDFGSGPGTALWAAR 52 (274)
T ss_pred HHHHHHhCcCCCCceEEEecCChHHHHHHHH
Confidence 344444444 44689999999997665544
No 167
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=89.42 E-value=0.22 Score=41.11 Aligned_cols=20 Identities=15% Similarity=0.018 Sum_probs=17.5
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
+...|||+|||+|-.|..++
T Consensus 250 ~g~~VLDlgaG~G~~t~~la 269 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIA 269 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHH
Confidence 56789999999998888777
No 168
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=88.82 E-value=0.32 Score=40.93 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=25.3
Q ss_pred hHHHHHHHHhhc-C--------CCCeEEEecCCCcccchhHh
Q 047720 20 PREWYSMLASLT-T--------HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 20 p~~l~~~l~~~~-~--------~~~~~~Dig~GtG~~~~~L~ 52 (126)
|..+.+.|++.+ + ...+++|.|||+|.+...++
T Consensus 9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~ 50 (524)
T TIGR02987 9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALL 50 (524)
T ss_pred cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHH
Confidence 778888887643 1 23589999999998887776
No 169
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=88.78 E-value=0.32 Score=42.64 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=20.0
Q ss_pred CCCeEEEecCCCcccchhHhhcC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+..+|||||||||.++..++..|
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G 560 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG 560 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC
Confidence 35789999999999999999665
No 170
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=88.66 E-value=0.25 Score=41.78 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=20.4
Q ss_pred CCCeEEEecCCCcccchhHhhcC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
....+||||||.|.+...+|...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~ 369 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN 369 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC
Confidence 56889999999999999999664
No 171
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=88.49 E-value=0.57 Score=35.35 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=28.9
Q ss_pred hHHHHHHHHhh-cCCCCeEEEecCCCcccchhHhhcCC
Q 047720 20 PREWYSMLASL-TTHHLLAWDAGMGNGQAALGVRFEGQ 56 (126)
Q Consensus 20 p~~l~~~l~~~-~~~~~~~~Dig~GtG~~~~~L~~~~~ 56 (126)
.+.|.+++... .+...+|++.|||.|.-...||+.|.
T Consensus 23 ~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~ 60 (218)
T PF05724_consen 23 NPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH 60 (218)
T ss_dssp THHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE
T ss_pred CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC
Confidence 45666666663 34567899999999999999998884
No 172
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=88.38 E-value=0.66 Score=37.35 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=25.3
Q ss_pred HHHHHHHHhhcC-CCCeEEEecCCCcccchhHhhcC
Q 047720 21 REWYSMLASLTT-HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 21 ~~l~~~l~~~~~-~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
..+++.+.+.++ ....+||+=||+|.+|..||+..
T Consensus 183 ~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~ 218 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA 218 (352)
T ss_dssp HHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS
T ss_pred HHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC
Confidence 356667766664 23479999999999999999554
No 173
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=88.11 E-value=0.31 Score=40.09 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=17.3
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
+..+|||+|||+|-.|..++
T Consensus 238 ~g~~VLDlcag~G~kt~~la 257 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHIL 257 (426)
T ss_pred CCCeEEEeCCCccHHHHHHH
Confidence 56789999999998887777
No 174
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=87.84 E-value=0.38 Score=37.42 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=24.8
Q ss_pred hHHHHHHHHhhcC--CCCeEEEecCCCcccchhHhh
Q 047720 20 PREWYSMLASLTT--HHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 20 p~~l~~~l~~~~~--~~~~~~Dig~GtG~~~~~L~~ 53 (126)
|..+.+.++..+. ...+|+|-+||+|.+.....+
T Consensus 31 P~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~ 66 (311)
T PF02384_consen 31 PREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAME 66 (311)
T ss_dssp -HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccceeechhhhHHHHHHHHHH
Confidence 8889998888764 445799999999987666553
No 175
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=87.39 E-value=0.39 Score=39.62 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=17.7
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
+..+|||+|||+|-.|..|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la 271 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIA 271 (434)
T ss_pred CcCEEEEeCCCCchhHHHHH
Confidence 56789999999999888887
No 176
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=87.37 E-value=0.6 Score=37.02 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=20.1
Q ss_pred CCCeEEEecCCCcccchhHhhcC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+...++|++||+|-.|..+++..
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~ 41 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERL 41 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhC
Confidence 55799999999999999999664
No 177
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=87.27 E-value=0.59 Score=36.78 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.0
Q ss_pred CCCeEEEecCCCcccchhHhhc
Q 047720 33 HHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
+.+.+||++||||-.|..+.+.
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~ 121 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRH 121 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHh
Confidence 5689999999999999988833
No 178
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=87.13 E-value=0.44 Score=39.45 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=17.2
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
+..+|||+|||+|-.|..++
T Consensus 237 ~g~~VLD~cagpGgkt~~la 256 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIA 256 (431)
T ss_pred CCCEEEEeCCCccHHHHHHH
Confidence 56789999999998887776
No 179
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=86.31 E-value=0.52 Score=36.76 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=20.0
Q ss_pred CCCCeEEEecCCCcccchhHhhcC
Q 047720 32 THHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+....|+|||||-|-+++.|..++
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~ 94 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG 94 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc
Confidence 466899999999999999998433
No 180
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=85.94 E-value=0.44 Score=34.12 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=18.2
Q ss_pred CCCeEEEecCCCcccchhHhhcC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+...++||||++|-.+..+.+.+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~ 45 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRG 45 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTST
T ss_pred cccEEEEcCCcccceeeeeeecc
Confidence 45889999999998888888555
No 181
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=85.77 E-value=0.83 Score=35.75 Aligned_cols=20 Identities=20% Similarity=0.327 Sum_probs=17.7
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
...++||||+|-|.+|..|+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~ 113 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA 113 (265)
T ss_pred cCCceEEecCCCcHHHHHHH
Confidence 34579999999999999998
No 182
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=85.75 E-value=0.54 Score=38.40 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=30.2
Q ss_pred hhCCCChHHHHHHHHhhcC---CCCeEEEecCCCcccchhHhhcC
Q 047720 14 DARPTYPREWYSMLASLTT---HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 14 ~~Rp~yp~~l~~~l~~~~~---~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+-+......+...+++... +..++||++||+|..+..++.+.
T Consensus 35 qp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~ 79 (382)
T PRK04338 35 NPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALET 79 (382)
T ss_pred CccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHC
Confidence 3345556677777666543 23589999999999999998653
No 183
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=85.71 E-value=0.6 Score=38.35 Aligned_cols=20 Identities=10% Similarity=-0.079 Sum_probs=16.8
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
+..+|||||||||-++...+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa 239 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSAL 239 (396)
T ss_pred CCCeEEEeccCCCHHHHHHH
Confidence 45789999999999887655
No 184
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=85.65 E-value=0.73 Score=35.22 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.7
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
..-...|||||-|-+...|+
T Consensus 60 ~kvefaDIGCGyGGLlv~Ls 79 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLA 79 (249)
T ss_pred ccceEEeeccCccchhhhcc
Confidence 33567899999999988888
No 185
>PLN02476 O-methyltransferase
Probab=85.63 E-value=1 Score=35.36 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=24.7
Q ss_pred CCChHHHHHHHHhh--cCCCCeEEEecCCCcccchhHhh
Q 047720 17 PTYPREWYSMLASL--TTHHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 17 p~yp~~l~~~l~~~--~~~~~~~~Dig~GtG~~~~~L~~ 53 (126)
|..+++.-+.|... ..+..++||||||+|-.|..++.
T Consensus 100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~ 138 (278)
T PLN02476 100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVAL 138 (278)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH
Confidence 33444444433332 23567999999999999998883
No 186
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=84.75 E-value=0.95 Score=33.85 Aligned_cols=23 Identities=17% Similarity=-0.011 Sum_probs=19.5
Q ss_pred CCCeEEEecCCCcccchhHhhcC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
...+||+||||+|-.|..||+..
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l 67 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEAL 67 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTS
T ss_pred CCceEEEeccccccHHHHHHHhh
Confidence 45799999999999999999654
No 187
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=84.70 E-value=1.2 Score=35.71 Aligned_cols=27 Identities=15% Similarity=0.010 Sum_probs=21.1
Q ss_pred HHHhhcCCCCeEEEecCCCcccchhHh
Q 047720 26 MLASLTTHHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 26 ~l~~~~~~~~~~~Dig~GtG~~~~~L~ 52 (126)
.|+..+++...++|+|||+|.=++.|.
T Consensus 69 ~Ia~~i~~~~~lIELGsG~~~Kt~~LL 95 (319)
T TIGR03439 69 DIAASIPSGSMLVELGSGNLRKVGILL 95 (319)
T ss_pred HHHHhcCCCCEEEEECCCchHHHHHHH
Confidence 455566777789999999998777666
No 188
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=84.56 E-value=0.47 Score=36.10 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=15.5
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
+..+|+|||||-|.+|..|.
T Consensus 55 ~~~~alDcGAGIGRVTk~lL 74 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLL 74 (218)
T ss_dssp --SEEEEET-TTTHHHHHTC
T ss_pred CcceEEecccccchhHHHHH
Confidence 45789999999999998776
No 189
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=84.36 E-value=1.2 Score=32.82 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=23.6
Q ss_pred hCCCChHHHHH-HHHh------hcCCCC-eEEEecCCCcccchhHh
Q 047720 15 ARPTYPREWYS-MLAS------LTTHHL-LAWDAGMGNGQAALGVR 52 (126)
Q Consensus 15 ~Rp~yp~~l~~-~l~~------~~~~~~-~~~Dig~GtG~~~~~L~ 52 (126)
.+++=+++++. -+++ .++... +++|||+|-|.=+..||
T Consensus 22 t~~~~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLa 67 (184)
T PF02527_consen 22 TSIRDPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLA 67 (184)
T ss_dssp -S--SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHH
Confidence 45555666654 2222 233333 79999999999999998
No 190
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=84.26 E-value=0.71 Score=37.56 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=19.8
Q ss_pred CCCCeEEEecCCCcccchhHhhcC
Q 047720 32 THHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.+...+|||||+||-.|..|++.|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG 233 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG 233 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC
Confidence 467899999999999998888333
No 191
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=84.19 E-value=0.66 Score=37.23 Aligned_cols=39 Identities=15% Similarity=0.026 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCcccchhHhhcCCCcceeecceeCHHHHHH
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEGQPLELDMPKEVSFEGFLR 73 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~~~~~~~i~~~~tl~~l~g 73 (126)
+...|||||||-|.-..-....+. ...+-..++.+.+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~e 100 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEE 100 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHH
Confidence 668999999999988877776653 455555556555554
No 192
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=84.13 E-value=0.63 Score=38.24 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=29.7
Q ss_pred CCeEEEecCCCcccchhHhhc------------C-CCcceeec-ceeCHHHHHHhHhhHHHHH
Q 047720 34 HLLAWDAGMGNGQAALGVRFE------------G-QPLELDMP-KEVSFEGFLRMLRSFSAVN 82 (126)
Q Consensus 34 ~~~~~Dig~GtG~~~~~L~~~------------~-~~~~~~i~-~~~tl~~l~gYl~TWSay~ 82 (126)
.-.++|+|||+|..|..+..+ + .+++|.+- ....-.||-.-+++-...+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~ 126 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLA 126 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhh
Confidence 457999999999988777611 1 23344332 3555556666666555433
No 193
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=84.09 E-value=2.6 Score=31.30 Aligned_cols=47 Identities=21% Similarity=0.135 Sum_probs=32.5
Q ss_pred HHHHHHhhcC--CCCeEEEecCCCcccchhHhhcCCCcceeecceeCHH
Q 047720 23 WYSMLASLTT--HHLLAWDAGMGNGQAALGVRFEGQPLELDMPKEVSFE 69 (126)
Q Consensus 23 l~~~l~~~~~--~~~~~~Dig~GtG~~~~~L~~~~~~~~~~i~~~~tl~ 69 (126)
+.+.+++.+. ..--|+++|.|||-+|..+.+.|.+++-.+--+.+-+
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~d 84 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPD 84 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHH
Confidence 4445555554 2336999999999999999999876654444455543
No 194
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=83.61 E-value=2.5 Score=32.02 Aligned_cols=43 Identities=19% Similarity=0.175 Sum_probs=30.3
Q ss_pred HHHhhhCCCChHHHHHHH-Hh------hcCC-CCeEEEecCCCcccchhHh
Q 047720 10 KLYLDARPTYPREWYSML-AS------LTTH-HLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 10 ~~Y~~~Rp~yp~~l~~~l-~~------~~~~-~~~~~Dig~GtG~~~~~L~ 52 (126)
..|.-..++=|.+++..- .+ +... ..+++|||+|.|.=+..||
T Consensus 36 ~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLA 86 (215)
T COG0357 36 KAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLA 86 (215)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHH
Confidence 455556777787876522 22 1223 5799999999999999988
No 195
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=82.94 E-value=0.54 Score=29.75 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=11.1
Q ss_pred EEEecCCCcccc
Q 047720 37 AWDAGMGNGQAA 48 (126)
Q Consensus 37 ~~Dig~GtG~~~ 48 (126)
++|+|||+|..+
T Consensus 52 ~ld~~~g~g~~~ 63 (257)
T COG0500 52 VLDIGCGTGRLA 63 (257)
T ss_pred eEEecCCcCHHH
Confidence 899999999966
No 196
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=81.81 E-value=1.6 Score=34.62 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=20.0
Q ss_pred hHHHHHHHHhhc---CCCCeEEEecCCCcccch
Q 047720 20 PREWYSMLASLT---THHLLAWDAGMGNGQAAL 49 (126)
Q Consensus 20 p~~l~~~l~~~~---~~~~~~~Dig~GtG~~~~ 49 (126)
|..-++.|+..+ +....|.|+|||-++++.
T Consensus 164 P~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 164 PENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS 196 (325)
T ss_pred CCChHHHHHHHHHhCcCceEEEecccchhhhhh
Confidence 333344454433 466778899999999884
No 197
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=81.10 E-value=1.9 Score=33.57 Aligned_cols=32 Identities=16% Similarity=0.048 Sum_probs=24.0
Q ss_pred HHHHHHHhh--cCCCCeEEEecCCCcccchhHhh
Q 047720 22 EWYSMLASL--TTHHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 22 ~l~~~l~~~--~~~~~~~~Dig~GtG~~~~~L~~ 53 (126)
.++..|.+. +.+...++|.|||.|++++.++.
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~ 38 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQ 38 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHH
Confidence 345555442 45677899999999999999883
No 198
>PLN03075 nicotianamine synthase; Provisional
Probab=80.38 E-value=1.2 Score=35.41 Aligned_cols=16 Identities=13% Similarity=-0.178 Sum_probs=12.9
Q ss_pred CCCeEEEecCCCcccc
Q 047720 33 HHLLAWDAGMGNGQAA 48 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~ 48 (126)
...+|+|||||+|-.|
T Consensus 123 ~p~~VldIGcGpgplt 138 (296)
T PLN03075 123 VPTKVAFVGSGPLPLT 138 (296)
T ss_pred CCCEEEEECCCCcHHH
Confidence 5678999999988544
No 199
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=79.64 E-value=1.4 Score=34.25 Aligned_cols=48 Identities=10% Similarity=0.073 Sum_probs=32.1
Q ss_pred eEEEecCCCcccchhHhhcCCCcceeecceeCHHHHHHhHhhHHHHHH
Q 047720 36 LAWDAGMGNGQAALGVRFEGQPLELDMPKEVSFEGFLRMLRSFSAVNT 83 (126)
Q Consensus 36 ~~~Dig~GtG~~~~~L~~~~~~~~~~i~~~~tl~~l~gYl~TWSay~~ 83 (126)
++++||||.|.....|.+...-..+.+-.-=.-.+-+..+++=|.|..
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e 121 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE 121 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch
Confidence 689999999999999986653223444332233455667777776665
No 200
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=79.33 E-value=1.9 Score=32.71 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=18.5
Q ss_pred CCCeEEEecCCCcccchhHhhcC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
...+|||+|+|+|.++..-+..|
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG 101 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG 101 (218)
T ss_pred ccceeeecccccChHHHHHHHhh
Confidence 45789999999999888776444
No 201
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=78.33 E-value=0.7 Score=29.72 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=37.6
Q ss_pred HHHHHHhhcCCCCeEEEecCCCcccchhHhh--cCC---C----------cceeecceeCHHHHHHhHhhHHHHHHH
Q 047720 23 WYSMLASLTTHHLLAWDAGMGNGQAALGVRF--EGQ---P----------LELDMPKEVSFEGFLRMLRSFSAVNTA 84 (126)
Q Consensus 23 l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~~--~~~---~----------~~~~i~~~~tl~~l~gYl~TWSay~~~ 84 (126)
+|+.+.+..+ ...|-|+..|.+-..+.+.+ -|. | ....--...++.++.++++||+..++-
T Consensus 1 l~~~l~~~~~-~~~V~~~~iG~~~t~V~~~~G~~GlA~t~~~~~~~~~~~~~~~~l~g~~~~ela~~~~S~~~lers 76 (87)
T PF13938_consen 1 LYDELIERAP-DIRVEDVCIGLHWTAVELSDGGCGLAYTPREESSGCRHMPDAGDLVGKPARELAELLLSWNPLERS 76 (87)
T ss_dssp HHHHHHCCCG-C-EEEEEEEBSSEEEEEETT-EEEEEE--CCC------CHCHHHHTTSBHHHHHHCCC-SSHHHHH
T ss_pred CHHHHhhhCC-CCEEEEEEEcCCEEEEEeCCCceeeEecccccccccccccccccccCcCHHHHHHHhhCCCHHHHH
Confidence 5677777766 67788888888754444431 110 0 011223478999999999999977653
No 202
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=77.43 E-value=2.7 Score=32.44 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=16.8
Q ss_pred CCeEEEecCCCcccchhHh
Q 047720 34 HLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 34 ~~~~~Dig~GtG~~~~~L~ 52 (126)
..++||+|+|.|..|..++
T Consensus 113 ~~~lLDlGAGdGeit~~m~ 131 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMA 131 (288)
T ss_pred CeeEEeccCCCcchhhhhc
Confidence 3689999999999998887
No 203
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=76.90 E-value=2 Score=31.51 Aligned_cols=43 Identities=21% Similarity=0.263 Sum_probs=26.6
Q ss_pred hhhCCCChHH----HHHHHHhhcCCCCeEEEecCCCcccchhHhhcCC
Q 047720 13 LDARPTYPRE----WYSMLASLTTHHLLAWDAGMGNGQAALGVRFEGQ 56 (126)
Q Consensus 13 ~~~Rp~yp~~----l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~~~~~ 56 (126)
...||+ ++- +|+.|....-....+|||=||||.++..-...|.
T Consensus 19 ~~~RPT-~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA 65 (183)
T PF03602_consen 19 DNTRPT-TDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA 65 (183)
T ss_dssp -TS-SS-SHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-
T ss_pred CCcCCC-cHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC
Confidence 356887 444 4555554412468899999999999987776664
No 204
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=75.96 E-value=2.9 Score=34.86 Aligned_cols=34 Identities=15% Similarity=0.006 Sum_probs=25.7
Q ss_pred HHHHHHHhhcC--CCCeEEEecCCCcccchhHhhcC
Q 047720 22 EWYSMLASLTT--HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 22 ~l~~~l~~~~~--~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.++++..+.+. +..++||+=||.|.+|..||+..
T Consensus 280 kl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~ 315 (432)
T COG2265 280 KLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV 315 (432)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC
Confidence 34555555554 56789999999999999999443
No 205
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=75.24 E-value=2.8 Score=33.15 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=22.0
Q ss_pred HHHHHHHhhc-----CCCCeEEEecCCCcccchhHhhc
Q 047720 22 EWYSMLASLT-----THHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 22 ~l~~~l~~~~-----~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
.+++.|...+ -...+|+|+|||+|.-.......
T Consensus 100 dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~ 137 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVK 137 (282)
T ss_pred HHHHHHHHHhhhheEecCceeEecCCcccccchhhhhh
Confidence 4555665332 25678999999999776655533
No 206
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=75.02 E-value=4.1 Score=32.36 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.0
Q ss_pred CCCCeEEEecCCCcccch
Q 047720 32 THHLLAWDAGMGNGQAAL 49 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~ 49 (126)
+.....+|+|||+|.-+.
T Consensus 44 ~~gsv~~d~gCGngky~~ 61 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG 61 (293)
T ss_pred CCcceeeecccCCcccCc
Confidence 346789999999996543
No 207
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.22 E-value=15 Score=26.91 Aligned_cols=31 Identities=26% Similarity=0.217 Sum_probs=22.9
Q ss_pred HHHhhcC--CCCeEEEecCCCcccchhHhhcCC
Q 047720 26 MLASLTT--HHLLAWDAGMGNGQAALGVRFEGQ 56 (126)
Q Consensus 26 ~l~~~~~--~~~~~~Dig~GtG~~~~~L~~~~~ 56 (126)
.+.+..+ +....+|||.|-|..-.+-+..|.
T Consensus 63 nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~ 95 (199)
T KOG4058|consen 63 NVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGL 95 (199)
T ss_pred HHHHHccCCCCCcEEeccCCCceeehhhhhhCC
Confidence 3344443 446899999999999888887773
No 208
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=71.77 E-value=5.8 Score=31.61 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=20.4
Q ss_pred cCCCCeEEEecCCCcccchhHhhc
Q 047720 31 TTHHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 31 ~~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
+.++.+|++-|+|+|-++..|+..
T Consensus 103 i~PGsvV~EsGTGSGSlShaiara 126 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARA 126 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHh
Confidence 458899999999999999888833
No 209
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=70.35 E-value=4.1 Score=31.36 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=18.3
Q ss_pred CCCeEEEecCCCcccchhHhh
Q 047720 33 HHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~ 53 (126)
+..++|+||+++|-.|..||.
T Consensus 79 ~ak~iLEiGT~~GySal~la~ 99 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATAL 99 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHh
Confidence 457899999999999998883
No 210
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=69.71 E-value=5.4 Score=34.12 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=23.6
Q ss_pred HHHHHHhhc--CCCCeEEEecCCCcccchhHhhc
Q 047720 23 WYSMLASLT--THHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 23 l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
||..+-+.+ +....++|+=||||..+..||+.
T Consensus 371 Lys~i~e~~~l~~~k~llDv~CGTG~iglala~~ 404 (534)
T KOG2187|consen 371 LYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG 404 (534)
T ss_pred HHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc
Confidence 344444443 46688999999999999999943
No 211
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=69.10 E-value=3.2 Score=31.43 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=18.3
Q ss_pred cCCCCeEEEecCCCc---ccchhHh
Q 047720 31 TTHHLLAWDAGMGNG---QAALGVR 52 (126)
Q Consensus 31 ~~~~~~~~Dig~GtG---~~~~~L~ 52 (126)
+.+.++|+||||-+| |+++...
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~ 91 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRV 91 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhh
Confidence 457899999999999 6777766
No 212
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=68.45 E-value=3 Score=31.21 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=17.5
Q ss_pred EEEecCCCcccchhHhhcCC
Q 047720 37 AWDAGMGNGQAALGVRFEGQ 56 (126)
Q Consensus 37 ~~Dig~GtG~~~~~L~~~~~ 56 (126)
++||||-.|-++..|.+++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~ 20 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK 20 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS
T ss_pred CceeccchhHHHHHHHhcCC
Confidence 68999999999999998885
No 213
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=67.87 E-value=2.7 Score=35.72 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=15.5
Q ss_pred CeEEEecCCCcccchhHhhc
Q 047720 35 LLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 35 ~~~~Dig~GtG~~~~~L~~~ 54 (126)
-.+||||+|||.++..-+.+
T Consensus 68 v~vLdigtGTGLLSmMAvra 87 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRA 87 (636)
T ss_pred EEEEEccCCccHHHHHHHHh
Confidence 46899999999887665533
No 214
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=66.33 E-value=4.3 Score=33.58 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=14.9
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
..+++||||.|+|....++-
T Consensus 113 apqsiLDvG~GPgtgl~A~n 132 (484)
T COG5459 113 APQSILDVGAGPGTGLWALN 132 (484)
T ss_pred CcchhhccCCCCchhhhhhc
Confidence 44679999999997655443
No 215
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=66.05 E-value=5.5 Score=33.21 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=17.9
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
+-+.++|+|+|.|-+++.|+
T Consensus 153 gi~~vvD~GaG~G~LSr~lS 172 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLS 172 (476)
T ss_pred CCCeeEEcCCCchHHHHHHh
Confidence 45788999999999999998
No 216
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=65.54 E-value=2.4 Score=28.50 Aligned_cols=9 Identities=44% Similarity=0.793 Sum_probs=8.0
Q ss_pred EEecCCCcc
Q 047720 38 WDAGMGNGQ 46 (126)
Q Consensus 38 ~Dig~GtG~ 46 (126)
+|||||-|.
T Consensus 7 IDIGcG~GN 15 (124)
T PF07101_consen 7 IDIGCGAGN 15 (124)
T ss_pred cccccCCCc
Confidence 699999995
No 217
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=63.86 E-value=4 Score=31.02 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.2
Q ss_pred CeEEEecCCCcccchhHh
Q 047720 35 LLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 35 ~~~~Dig~GtG~~~~~L~ 52 (126)
-.++++|+|+|.++..+.
T Consensus 20 ~~ivE~GaG~G~La~diL 37 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDIL 37 (252)
T ss_dssp EEEEEES-TTSHHHHHHH
T ss_pred cEEEEECCCchHHHHHHH
Confidence 589999999999998877
No 218
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=63.36 E-value=6.1 Score=29.49 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=29.7
Q ss_pred HHHhhcCCCCeEEEecCCCcccchhHhhcCCCcceeecceeCHHHHH
Q 047720 26 MLASLTTHHLLAWDAGMGNGQAALGVRFEGQPLELDMPKEVSFEGFL 72 (126)
Q Consensus 26 ~l~~~~~~~~~~~Dig~GtG~~~~~L~~~~~~~~~~i~~~~tl~~l~ 72 (126)
.|++.+.++..|+|+-||-|-++..+|+.+. ....+-.+++-+.+.
T Consensus 94 Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~ 139 (200)
T PF02475_consen 94 RIANLVKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVE 139 (200)
T ss_dssp HHHTC--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHH
T ss_pred HHHhcCCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHH
Confidence 5666677889999999999999999998542 255556666655443
No 219
>PRK10742 putative methyltransferase; Provisional
Probab=61.61 E-value=9.9 Score=29.55 Aligned_cols=21 Identities=29% Similarity=0.194 Sum_probs=18.5
Q ss_pred CeEEEecCCCcccchhHhhcC
Q 047720 35 LLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 35 ~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.+|||+-+|+|..+..++..|
T Consensus 90 p~VLD~TAGlG~Da~~las~G 110 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVG 110 (250)
T ss_pred CEEEECCCCccHHHHHHHHcC
Confidence 489999999999999999554
No 220
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=60.54 E-value=4.6 Score=30.70 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=16.1
Q ss_pred CCeEEEecCCCcccchhHh
Q 047720 34 HLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 34 ~~~~~Dig~GtG~~~~~L~ 52 (126)
.++..|+|+|||.++..-|
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa 51 (252)
T COG4076 33 EDTFADLGAGSGILSVVAA 51 (252)
T ss_pred hhceeeccCCcchHHHHHH
Confidence 3788999999999887666
No 221
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=60.44 E-value=7.9 Score=27.79 Aligned_cols=39 Identities=21% Similarity=0.143 Sum_probs=24.5
Q ss_pred CCCChHHHHHHHHhh-cCCCCeEEEecCCCcccchhHhhc
Q 047720 16 RPTYPREWYSMLASL-TTHHLLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 16 Rp~yp~~l~~~l~~~-~~~~~~~~Dig~GtG~~~~~L~~~ 54 (126)
--..|.+|.+.|+.. +.+.+.|||-=||+|..+.+-...
T Consensus 173 ~~~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l 212 (231)
T PF01555_consen 173 PTQKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL 212 (231)
T ss_dssp TT-S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT
T ss_pred eecCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHc
Confidence 345799999988875 468899999888888655443333
No 222
>PRK05973 replicative DNA helicase; Provisional
Probab=59.71 E-value=29 Score=26.55 Aligned_cols=68 Identities=21% Similarity=0.153 Sum_probs=41.9
Q ss_pred hhhHHHHHHhhhCCCChHHHHHHHHhhcCCCCeEEE-ecCCCcccchhHh------hcCCCcceeecceeCHHHHHHhHh
Q 047720 4 LFNKQAKLYLDARPTYPREWYSMLASLTTHHLLAWD-AGMGNGQAALGVR------FEGQPLELDMPKEVSFEGFLRMLR 76 (126)
Q Consensus 4 ~F~~~a~~Y~~~Rp~yp~~l~~~l~~~~~~~~~~~D-ig~GtG~~~~~L~------~~~~~~~~~i~~~~tl~~l~gYl~ 76 (126)
.|+..+..|++..| .+.|..-+++...++= =..|+|+.+..+. .+|.+ -+.+..+++-++++.-+.
T Consensus 40 ~w~~~~~~~~~~~p------~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~-vlyfSlEes~~~i~~R~~ 112 (237)
T PRK05973 40 SWSLLAAKAAATTP------AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRT-GVFFTLEYTEQDVRDRLR 112 (237)
T ss_pred hHHHHHHhccCCCC------HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCe-EEEEEEeCCHHHHHHHHH
Confidence 45667777777666 4566655555554443 3458886554432 55654 566677777777777766
Q ss_pred hH
Q 047720 77 SF 78 (126)
Q Consensus 77 TW 78 (126)
+.
T Consensus 113 s~ 114 (237)
T PRK05973 113 AL 114 (237)
T ss_pred Hc
Confidence 55
No 223
>PLN02823 spermine synthase
Probab=58.73 E-value=9.5 Score=30.72 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=18.2
Q ss_pred cCCCCeEEEecCCCcccchhHh
Q 047720 31 TTHHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 31 ~~~~~~~~Dig~GtG~~~~~L~ 52 (126)
.+...+||-||+|.|-+++.+.
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l 122 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVL 122 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHH
Confidence 3455789999999999888776
No 224
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=57.38 E-value=7.6 Score=31.55 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=18.2
Q ss_pred CCCeEEEecCCCcccchhHhh
Q 047720 33 HHLLAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~ 53 (126)
....++|||.|.|..+..+..
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~ 197 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLS 197 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHH
Confidence 468899999999999988873
No 225
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=56.34 E-value=5.3 Score=29.66 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=13.9
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
..-+||..||+||+=+..||
T Consensus 31 ~~lrIWSagCStGeE~YSlA 50 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLA 50 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHH
Confidence 34579999999997665555
No 226
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=53.53 E-value=11 Score=29.28 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=20.2
Q ss_pred CCCCeEEEecCCCcccchhHhhcC
Q 047720 32 THHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.++..++|||+-||-+|.-|.++|
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g 101 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG 101 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC
Confidence 377899999999999998888554
No 227
>PRK13699 putative methylase; Provisional
Probab=52.49 E-value=17 Score=27.36 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=30.1
Q ss_pred CChHHHHHHHHhh-cCCCCeEEEecCCCcccchhHhhcC
Q 047720 18 TYPREWYSMLASL-TTHHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 18 ~yp~~l~~~l~~~-~~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
..|.+|.+.++.. ..+.+.|+|-=||+|..+.+-...+
T Consensus 147 ~kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~ 185 (227)
T PRK13699 147 EKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSG 185 (227)
T ss_pred CCcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcC
Confidence 4689999988864 5678899999999997776665555
No 228
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=52.41 E-value=11 Score=29.26 Aligned_cols=68 Identities=19% Similarity=0.086 Sum_probs=33.5
Q ss_pred CCCeEEEecCCCcccchhHhhcCCCc-ce--eecceeCHHHHHHhHh-----hHHHHHHHHHh--CC-CcchHHHHHHHH
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEGQPL-EL--DMPKEVSFEGFLRMLR-----SFSAVNTAVEQ--GV-DLLSEKVVKELE 101 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~~~~-~~--~i~~~~tl~~l~gYl~-----TWSay~~~~~~--g~-d~l~e~~~~~l~ 101 (126)
+..+++|||||+=.. ..|+... -+ ++ .--.+-+++++...|+ -||.+-.+.-+ |. +... +..++++
T Consensus 56 ~g~~llDiGsGPtiy-~~lsa~~-~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~-e~e~~lR 132 (256)
T PF01234_consen 56 KGETLLDIGSGPTIY-QLLSACE-WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWE-EKEEKLR 132 (256)
T ss_dssp -EEEEEEES-TT--G-GGTTGGG-TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHH-HHHHHHH
T ss_pred CCCEEEEeCCCcHHH-hhhhHHH-hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhh-hHHHHHH
Confidence 346899999999543 2333111 11 11 1223455666666665 38888776443 43 3344 3555555
Q ss_pred HH
Q 047720 102 TA 103 (126)
Q Consensus 102 ~~ 103 (126)
++
T Consensus 133 ~~ 134 (256)
T PF01234_consen 133 RA 134 (256)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 229
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=51.60 E-value=12 Score=31.59 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=21.8
Q ss_pred hHHHHHHHHhhcC--CCCeEEEecCCCc
Q 047720 20 PREWYSMLASLTT--HHLLAWDAGMGNG 45 (126)
Q Consensus 20 p~~l~~~l~~~~~--~~~~~~Dig~GtG 45 (126)
|.++.+.|+..+. +..++.|-.||||
T Consensus 171 P~~v~~liv~~l~~~~~~~i~DpacGsg 198 (489)
T COG0286 171 PREVSELIVELLDPEPRNSIYDPACGSG 198 (489)
T ss_pred hHHHHHHHHHHcCCCCCCeecCCCCchh
Confidence 7888888888764 5678999999999
No 230
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=50.79 E-value=16 Score=27.73 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=20.7
Q ss_pred CCCCeEEEecCCCcccchhHhhcC
Q 047720 32 THHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.+..++|+||++.|-+|..||...
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l 81 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALAL 81 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhC
Confidence 366789999999999999999665
No 231
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=49.07 E-value=14 Score=28.27 Aligned_cols=31 Identities=13% Similarity=0.078 Sum_probs=24.6
Q ss_pred HHHHhhcCCCCeEEEecCCCcccchhHhhcC
Q 047720 25 SMLASLTTHHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 25 ~~l~~~~~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
..+++.++....++||||=.+-++..|..++
T Consensus 8 ~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~ 38 (226)
T COG2384 8 TTVANLVKQGARIADIGSDHAYLPIYLVKNN 38 (226)
T ss_pred HHHHHHHHcCCceeeccCchhHhHHHHHhcC
Confidence 3455666656669999999999999999776
No 232
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=48.69 E-value=10 Score=30.99 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=13.8
Q ss_pred cCCCCeEEEecCCCcccc
Q 047720 31 TTHHLLAWDAGMGNGQAA 48 (126)
Q Consensus 31 ~~~~~~~~Dig~GtG~~~ 48 (126)
.++.+.++|+|||-|--.
T Consensus 115 ~~~~~~~~~LgCGKGGDL 132 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDL 132 (389)
T ss_pred hccccccceeccCCcccH
Confidence 456788999999998433
No 233
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=47.88 E-value=20 Score=29.17 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCC------CCeEEEecCCCcccchhHhhcC
Q 047720 22 EWYSMLASLTTH------HLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 22 ~l~~~l~~~~~~------~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.+++.|..+.++ ..++|==|||.|.++..||..|
T Consensus 133 pii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G 172 (369)
T KOG2798|consen 133 PIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLG 172 (369)
T ss_pred hHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhc
Confidence 456666666553 4578889999999999999444
No 234
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=47.66 E-value=10 Score=30.38 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=33.8
Q ss_pred CCCCeEEEecCCCcccchhHh------------hc--CCCcceeec-ceeCHHHHHHhHhhHHHHHH
Q 047720 32 THHLLAWDAGMGNGQAALGVR------------FE--GQPLELDMP-KEVSFEGFLRMLRSFSAVNT 83 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~------------~~--~~~~~~~i~-~~~tl~~l~gYl~TWSay~~ 83 (126)
++.-+++|+||-+|--|..+. .. ..|++|.+- ....-.||=..+++....+.
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~ 81 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQ 81 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhh
Confidence 345679999999998887776 11 245577664 48888899999988888755
No 235
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=46.95 E-value=15 Score=28.77 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=19.7
Q ss_pred CCCChHHHHHHHHhhcC----CCCeEEEecCCC
Q 047720 16 RPTYPREWYSMLASLTT----HHLLAWDAGMGN 44 (126)
Q Consensus 16 Rp~yp~~l~~~l~~~~~----~~~~~~Dig~Gt 44 (126)
|.+|---+.|.|.+..+ ++-++||||.|-
T Consensus 57 RAdYih~laDLL~s~~g~~~~~~i~~LDIGvGA 89 (292)
T COG3129 57 RADYIHHLADLLASTSGQIPGKNIRILDIGVGA 89 (292)
T ss_pred hhHHHHHHHHHHHhcCCCCCcCceEEEeeccCc
Confidence 55666667777766432 456799999885
No 236
>PF12060 DUF3541: Domain of unknown function (DUF3541); InterPro: IPR021928 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 230 amino acids in length.
Probab=44.57 E-value=30 Score=26.42 Aligned_cols=34 Identities=18% Similarity=0.451 Sum_probs=26.8
Q ss_pred HhHhhHHH-HHH---HHHh-CC-CcchHHHHHHHHHHhCCC
Q 047720 73 RMLRSFSA-VNT---AVEQ-GV-DLLSEKVVKELETAWGGS 107 (126)
Q Consensus 73 gYl~TWSa-y~~---~~~~-g~-d~l~e~~~~~l~~~wg~~ 107 (126)
..|+.|.| ..+ |.++ |+ |+++ +|++.|.+.+++.
T Consensus 149 ~MI~aWAAQLaNqVYWlrQLGe~D~v~-~f~~AFr~~YPd~ 188 (227)
T PF12060_consen 149 AMIEAWAAQLANQVYWLRQLGEQDVVE-EFIQAFRATYPDS 188 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhHHH-HHHHHHHHhCCCh
Confidence 35788988 222 7777 76 8999 7999999999987
No 237
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=44.18 E-value=36 Score=24.85 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=21.5
Q ss_pred HHHHHHHh-------CCCcchHHHHHHHHHHhCCCCcEEE
Q 047720 80 AVNTAVEQ-------GVDLLSEKVVKELETAWGGSELVRT 112 (126)
Q Consensus 80 ay~~~~~~-------g~d~l~e~~~~~l~~~wg~~~~~~~ 112 (126)
-||+|+++ +.++|.-+-.-+++..|..++++++
T Consensus 26 kYHeWMknEelr~LT~SE~LtLdeEyeMQ~sW~~DeDKlT 65 (185)
T KOG4135|consen 26 KYHEWMKNEELRRLTASEPLTLDEEYEMQKSWREDEDKLT 65 (185)
T ss_pred HHHhHhhhHHHHHhhcCCCcchhHHHHhhhhhccCCcceE
Confidence 48999886 3344431234477899998866665
No 238
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=43.92 E-value=23 Score=27.88 Aligned_cols=18 Identities=17% Similarity=0.505 Sum_probs=14.3
Q ss_pred CeEEEecCCCcccchhHh
Q 047720 35 LLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 35 ~~~~Dig~GtG~~~~~L~ 52 (126)
-+||..||.||+=+..||
T Consensus 117 irIWSAgCStGEEpYSlA 134 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIA 134 (287)
T ss_pred EEEEEccccCCHHHHHHH
Confidence 589999999997555554
No 239
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=43.80 E-value=15 Score=28.55 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=15.4
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
....+|++|+|||..+...|
T Consensus 86 ~~~~vlELGsGtglvG~~aa 105 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAA 105 (248)
T ss_pred cceeEEEecCCccHHHHHHH
Confidence 34579999999997666555
No 240
>PHA01634 hypothetical protein
Probab=43.66 E-value=37 Score=24.28 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=21.0
Q ss_pred CCCeEEEecCCCcccchhHhhcCCC
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEGQP 57 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~~~ 57 (126)
.+.+|+|||++-|-.+.-++-.|..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK 52 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGAS 52 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCcc
Confidence 5679999999999999998866643
No 241
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=41.05 E-value=44 Score=28.10 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=35.5
Q ss_pred HHHHHHhhcC-CCCeEE---EecCCCcccchhHhhcCC------Ccceeecc---eeCHHHHHHhHhhHHHH
Q 047720 23 WYSMLASLTT-HHLLAW---DAGMGNGQAALGVRFEGQ------PLELDMPK---EVSFEGFLRMLRSFSAV 81 (126)
Q Consensus 23 l~~~l~~~~~-~~~~~~---Dig~GtG~~~~~L~~~~~------~~~~~i~~---~~tl~~l~gYl~TWSay 81 (126)
+++.|+...+ +-|... |..||++.....+|..|. ++.+.|.. -.+..|+..+.+-.+|+
T Consensus 361 ~~~~l~~~~~Vp~Q~f~~~~d~~~Gstigpi~aa~tGi~tIDiG~~~LsMHS~rE~~g~~D~~~~~~~~~aF 432 (437)
T COG1362 361 LLRKLAQKAGVPWQVFVLRNDVPCGSTIGPILAARTGIRTIDIGPALLSMHSIRELSGSADLYEAYKALSAF 432 (437)
T ss_pred HHHHHHHHcCCceEEEEecccCCCCcccchhHHhhcCCceeecchhhhhhccHHHHcchhHHHHHHHHHHHH
Confidence 3445555433 233322 899999999998886664 34666654 44555666665555553
No 242
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=40.65 E-value=15 Score=27.10 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=26.8
Q ss_pred ecCCCcccchhHhhc-CCCc--------ceeecceeCHHHHHHhHhh
Q 047720 40 AGMGNGQAALGVRFE-GQPL--------ELDMPKEVSFEGFLRMLRS 77 (126)
Q Consensus 40 ig~GtG~~~~~L~~~-~~~~--------~~~i~~~~tl~~l~gYl~T 77 (126)
.|||+=.++..||+. |+++ ++.-++.|++++|-.|-++
T Consensus 9 pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~ 55 (179)
T COG1102 9 PGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEE 55 (179)
T ss_pred CCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhc
Confidence 488888888999944 3332 4556789999998776543
No 243
>PRK11524 putative methyltransferase; Provisional
Probab=40.10 E-value=32 Score=26.64 Aligned_cols=38 Identities=11% Similarity=0.049 Sum_probs=27.5
Q ss_pred CChHHHHHHHHhh-cCCCCeEEEecCCCcccchhHhhcC
Q 047720 18 TYPREWYSMLASL-TTHHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 18 ~yp~~l~~~l~~~-~~~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
.-|.+|.+.|+.. +.+++.|||.=||+|.-+++-...+
T Consensus 192 ~kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lg 230 (284)
T PRK11524 192 QKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASG 230 (284)
T ss_pred cChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcC
Confidence 4478899888875 4688999998888886555444444
No 244
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=39.96 E-value=37 Score=26.55 Aligned_cols=19 Identities=16% Similarity=0.466 Sum_probs=15.0
Q ss_pred CCeEEEecCCCcccchhHh
Q 047720 34 HLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 34 ~~~~~Dig~GtG~~~~~L~ 52 (126)
.-+||-.||+||+=.-.||
T Consensus 97 ~irIWSaaCStGEEpYSiA 115 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLA 115 (268)
T ss_pred ceEEEecCcCCCccHHHHH
Confidence 4579999999998665555
No 245
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=39.66 E-value=17 Score=29.16 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=12.1
Q ss_pred CCCeEEEecCCCccc
Q 047720 33 HHLLAWDAGMGNGQA 47 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~ 47 (126)
..-+|+||+||+|.-
T Consensus 135 ~pvrIlDIAaG~GRY 149 (311)
T PF12147_consen 135 RPVRILDIAAGHGRY 149 (311)
T ss_pred CceEEEEeccCCcHH
Confidence 446799999999954
No 246
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=39.49 E-value=32 Score=24.78 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=18.7
Q ss_pred HHHHHHHhhc--CCCCeEEEecCCCcccchhHh
Q 047720 22 EWYSMLASLT--THHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 22 ~l~~~l~~~~--~~~~~~~Dig~GtG~~~~~L~ 52 (126)
.+...|+... .+...++|-=||||.+..+-+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa 47 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAA 47 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHH
Confidence 3444444443 366789999999998776555
No 247
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=39.46 E-value=31 Score=30.43 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=16.8
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
+...++|-.||+|.+...-|
T Consensus 190 ~~~~l~DP~CGSGTilIEAa 209 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAA 209 (702)
T ss_pred CCCeEEccCCCccHHHHHHH
Confidence 45789999999998887666
No 248
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=39.20 E-value=15 Score=26.61 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=15.2
Q ss_pred eEEEecCCCcccchhHhh
Q 047720 36 LAWDAGMGNGQAALGVRF 53 (126)
Q Consensus 36 ~~~Dig~GtG~~~~~L~~ 53 (126)
.++|+-||-|--|..||.
T Consensus 2 ~vlD~fcG~GGNtIqFA~ 19 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFAR 19 (163)
T ss_dssp EEEETT-TTSHHHHHHHH
T ss_pred EEEEeccCcCHHHHHHHH
Confidence 689999999999999983
No 249
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=39.09 E-value=31 Score=22.36 Aligned_cols=33 Identities=9% Similarity=0.174 Sum_probs=20.6
Q ss_pred ecCCCcccchhHh---------hcCCCcceeecceeCHHHHHHhH
Q 047720 40 AGMGNGQAALGVR---------FEGQPLELDMPKEVSFEGFLRML 75 (126)
Q Consensus 40 ig~GtG~~~~~L~---------~~~~~~~~~i~~~~tl~~l~gYl 75 (126)
+-||+|.+|-.++ ++|.+ ..+.. .++.++.+++
T Consensus 7 vvCgsG~~TS~m~~~ki~~~l~~~gi~--~~v~~-~~~~e~~~~~ 48 (94)
T PRK10310 7 VACGGAVATSTMAAEEIKELCQSHNIP--VELIQ-CRVNEIETYM 48 (94)
T ss_pred EECCCchhHHHHHHHHHHHHHHHCCCe--EEEEE-ecHHHHhhhc
Confidence 6788888777664 44443 34444 6777776655
No 250
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=37.42 E-value=27 Score=22.93 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=10.5
Q ss_pred ecCCCcccchhHh
Q 047720 40 AGMGNGQAALGVR 52 (126)
Q Consensus 40 ig~GtG~~~~~L~ 52 (126)
..||+|+.|-.+.
T Consensus 6 ~aCG~GvgSS~~i 18 (93)
T COG3414 6 AACGNGVGSSTMI 18 (93)
T ss_pred EECCCCccHHHHH
Confidence 5799999887665
No 251
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=36.21 E-value=48 Score=25.95 Aligned_cols=31 Identities=10% Similarity=0.181 Sum_probs=22.0
Q ss_pred HHHHhhcC--CCCeEEEecCCCcccchhHhhcC
Q 047720 25 SMLASLTT--HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 25 ~~l~~~~~--~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
+.|+++.+ .+.-|.+||-|+|-.|+.+.+.+
T Consensus 40 ~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~ 72 (326)
T KOG0821|consen 40 DKIVKKAGNLTNAYVYEIGPGPGGITRSILNAD 72 (326)
T ss_pred HHHHHhccccccceeEEecCCCCchhHHHHhcc
Confidence 34444433 44567899999999999988554
No 252
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=33.51 E-value=1.2e+02 Score=26.53 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=39.7
Q ss_pred CChHHHHHHHHhhcCCCCeEEEecCCC--cccchhHh--hcCCCc-------cee-ecceeCHHH---------HHHhHh
Q 047720 18 TYPREWYSMLASLTTHHLLAWDAGMGN--GQAALGVR--FEGQPL-------ELD-MPKEVSFEG---------FLRMLR 76 (126)
Q Consensus 18 ~yp~~l~~~l~~~~~~~~~~~Dig~Gt--G~~~~~L~--~~~~~~-------~~~-i~~~~tl~~---------l~gYl~ 76 (126)
.||.-|-..|+..-....++..+|-+. |.+|+.=| .-|-+| .+. +..-|.|+. .++++.
T Consensus 352 gyPaYL~srlA~fYERaG~v~~~~~~~r~GsvtV~gaVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~ 431 (588)
T COG1155 352 GYPAYLGSRLAEFYERAGRVRLVSPEERFGSITVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLN 431 (588)
T ss_pred ccchHHHHHHHHHHHhcCeeeecCCCcceEEEEEecCCCCCCCCcCcccchheeeeeeeecccchhhhhcccCcccChHH
Confidence 477777777776544445666676666 55554333 222111 111 223444443 578999
Q ss_pred hHHHHHHHHHh
Q 047720 77 SFSAVNTAVEQ 87 (126)
Q Consensus 77 TWSay~~~~~~ 87 (126)
|||.|..+.++
T Consensus 432 syS~Y~~~~~~ 442 (588)
T COG1155 432 SYSLYTEDLRS 442 (588)
T ss_pred HHHHHHHHHHH
Confidence 99999985443
No 253
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=33.35 E-value=41 Score=29.67 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=18.1
Q ss_pred HHHHHHhhcCC------CCeEEEecCCCcccc
Q 047720 23 WYSMLASLTTH------HLLAWDAGMGNGQAA 48 (126)
Q Consensus 23 l~~~l~~~~~~------~~~~~Dig~GtG~~~ 48 (126)
+.+.|.+.+.. ...+++-|+|||+.=
T Consensus 33 M~~~V~~al~~~~~~~~~~lviEAgTGtGKTl 64 (697)
T PRK11747 33 MIAEVAKTLAGEYLKDGRILVIEAGTGVGKTL 64 (697)
T ss_pred HHHHHHHHHhcccccccceEEEECCCCcchhH
Confidence 55666665432 457899999999643
No 254
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=31.74 E-value=61 Score=25.44 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=19.9
Q ss_pred CCeEEEecCCCcccchhHhhcCC
Q 047720 34 HLLAWDAGMGNGQAALGVRFEGQ 56 (126)
Q Consensus 34 ~~~~~Dig~GtG~~~~~L~~~~~ 56 (126)
..+||==|||-|.++..+|..|+
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~ 79 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGY 79 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccc
Confidence 46799999999999999997763
No 255
>PF11278 DUF3079: Protein of unknown function (DUF3079); InterPro: IPR021430 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=31.65 E-value=17 Score=21.28 Aligned_cols=9 Identities=33% Similarity=0.405 Sum_probs=7.0
Q ss_pred EEecCCCcc
Q 047720 38 WDAGMGNGQ 46 (126)
Q Consensus 38 ~Dig~GtG~ 46 (126)
=|++||+|.
T Consensus 26 ~~l~CGNGs 34 (52)
T PF11278_consen 26 DSLACGNGS 34 (52)
T ss_pred hhhcccCCc
Confidence 368999985
No 256
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=30.89 E-value=36 Score=28.03 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=16.7
Q ss_pred CCCeEEEecCCCcccchhHh
Q 047720 33 HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~ 52 (126)
..-.++++|.|+|.++..+.
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL 96 (370)
T COG1565 77 APLKLVEIGAGRGTLASDIL 96 (370)
T ss_pred CCceEEEeCCCcChHHHHHH
Confidence 34569999999999998877
No 257
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=30.46 E-value=68 Score=23.07 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCCcEEEEEEEEEEEEeee
Q 047720 96 VVKELETAWGGSELVRTIIYKTFMLVGKV 124 (126)
Q Consensus 96 ~~~~l~~~wg~~~~~~~v~wp~f~~~gr~ 124 (126)
+.+.+.+.... +. +.++|.+.+.+|+|
T Consensus 214 ~~~~~~~~~~~-~g-i~~~~~~~~~~~~k 240 (240)
T TIGR02072 214 FLERYEQEFQP-DG-LPLTYHVVYGIAKK 240 (240)
T ss_pred HHHHHHHhhcC-CC-ceeEEEEEEEEEEC
Confidence 44444445544 33 88999999999986
No 258
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=30.18 E-value=53 Score=25.24 Aligned_cols=31 Identities=10% Similarity=-0.065 Sum_probs=21.7
Q ss_pred CChHHHHHHHHhhcCCCCeEEEecCCCcccc
Q 047720 18 TYPREWYSMLASLTTHHLLAWDAGMGNGQAA 48 (126)
Q Consensus 18 ~yp~~l~~~l~~~~~~~~~~~Dig~GtG~~~ 48 (126)
.=++++.+...........++|||+|+|...
T Consensus 23 ~~~d~~~~~A~~~~~~GAdiIDIG~~~~~~~ 53 (252)
T cd00740 23 EDYDEALDVARQQVEGGAQILDLNVDYGGLD 53 (252)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
Confidence 3355666666666666788999999998543
No 259
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=29.21 E-value=83 Score=23.39 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=28.3
Q ss_pred hhCCCC---hHHHHHHHHhhcCCCCeEEEecCCCcccchhHhhcCC
Q 047720 14 DARPTY---PREWYSMLASLTTHHLLAWDAGMGNGQAALGVRFEGQ 56 (126)
Q Consensus 14 ~~Rp~y---p~~l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~~~~~ 56 (126)
..||+= =+++|++|....-.+.++|||=+|||-++..-+..|.
T Consensus 21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA 66 (187)
T COG0742 21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA 66 (187)
T ss_pred CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC
Confidence 357762 1235555554211357899999999999887776664
No 260
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=29.13 E-value=41 Score=26.00 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=22.2
Q ss_pred hhCCCChHHHHHHHHhhc----C--CCCeEEEecCCCcccchhHh
Q 047720 14 DARPTYPREWYSMLASLT----T--HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 14 ~~Rp~yp~~l~~~l~~~~----~--~~~~~~Dig~GtG~~~~~L~ 52 (126)
..=|.+|--|...|.+.+ . ..-++||.=||+|-+-..|.
T Consensus 26 pG~p~FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlG 70 (246)
T PF11599_consen 26 PGFPAFPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLG 70 (246)
T ss_dssp TTB----HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHH
Confidence 344788888888777643 2 44579999999996544443
No 261
>PHA01976 helix-turn-helix protein
Probab=29.01 E-value=1.2e+02 Score=17.51 Aligned_cols=44 Identities=16% Similarity=-0.012 Sum_probs=31.1
Q ss_pred cceeCHHHHHHhHh-hHHHHHHHHHhCCCcchHHHHHHHHHHhCCC
Q 047720 63 PKEVSFEGFLRMLR-SFSAVNTAVEQGVDLLSEKVVKELETAWGGS 107 (126)
Q Consensus 63 ~~~~tl~~l~gYl~-TWSay~~~~~~g~d~l~e~~~~~l~~~wg~~ 107 (126)
.+.+|.+++...+. |=|.+.+|......|-. +.+.++.+.+|.+
T Consensus 13 ~~glt~~~lA~~~gvs~~~v~~~e~g~~~p~~-~~l~~ia~~l~v~ 57 (67)
T PHA01976 13 ARAWSAPELSRRAGVRHSLIYDFEADKRLPNL-KTLLRLADALGVT 57 (67)
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCH-HHHHHHHHHHCcC
Confidence 46789999999987 55667777443334544 5677888888765
No 262
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=28.53 E-value=85 Score=23.34 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=24.7
Q ss_pred cchHHHHHHHHHHhCCCCcEEEEEEEEEEEEeee
Q 047720 91 LLSEKVVKELETAWGGSELVRTIIYKTFMLVGKV 124 (126)
Q Consensus 91 ~l~e~~~~~l~~~wg~~~~~~~v~wp~f~~~gr~ 124 (126)
++.....+++.+.|...+..+.++|.+++-.+++
T Consensus 217 ~~~~~~~~~~~~~~~~~~g~~~lty~v~~~~~~~ 250 (251)
T PRK10258 217 ILTRSQLQRLQLAWPQQQGRYPLTYHLFLGVIER 250 (251)
T ss_pred CCcHHHHHHHHHhccccCCCcceEEEEEEEEEEc
Confidence 4443456788888876555688999999977665
No 263
>PF03288 Pox_D5: Poxvirus D5 protein-like; InterPro: IPR004968 This domain is found at the C terminus of phage P4 alpha protein and related proteins. Phage P4 DNA replication depends on the product of the alpha gene, which has origin recognition ability, DNA helicase activity, and DNA primase activity. The structure of the protein can be summarised as follows: The N terminus provides the primase activity, the central region is the helicase/nucleoside triphosphatase domain and the ori DNA recognition resides in the C-terminal 1/3 of the protein []. The domain is also found at the C terminus of a number of proteins from orthopox viruses including vaccinia virus D5. D5 encodes a 90kDa protein that is transiently expressed at early times after infection. It has an nucleoside triphosphatase activity which is independent of common nucleic acid cofactors and it can hydrolyse all the common ribo- and deoxyribonucleoside triphosphates to diphosphates in the presence of a divalent cation [].; PDB: 1KA8_E.
Probab=28.27 E-value=1e+02 Score=19.01 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=17.3
Q ss_pred hHHHHHHHHHh-CCCc-chH-HHHHHHHHHh
Q 047720 77 SFSAVNTAVEQ-GVDL-LSE-KVVKELETAW 104 (126)
Q Consensus 77 TWSay~~~~~~-g~d~-l~e-~~~~~l~~~w 104 (126)
-|.+|+.|++. |..+ +.. .|.++|.+..
T Consensus 27 lY~~Y~~wc~~ng~~~~ls~~~F~~~L~~~~ 57 (86)
T PF03288_consen 27 LYDAYKEWCEENGYKPPLSKRKFGKELKQYF 57 (86)
T ss_dssp HHHHHHHHHHHTT-S----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHh
Confidence 47889999887 6655 442 3777877764
No 264
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=28.25 E-value=59 Score=24.53 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=16.7
Q ss_pred cCCCCeEEEecCCCcccchhHh
Q 047720 31 TTHHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 31 ~~~~~~~~Dig~GtG~~~~~L~ 52 (126)
+.+.+.|+||||=+|--+..++
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~ 64 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAA 64 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHH
Confidence 4578999999999995544444
No 265
>TIGR02703 carboxysome_A carboxysome peptide A. This model distinguishes one of two closely related paralogs encoded by nearby genes in the carboxysome operons of a number of cyanobacteria and chemoautotrophic bacteria. More distantly related proteins, also belonging to Pfam family pfam03319, participate in other types of shell such as the ethanolamine degradation organelle.
Probab=27.86 E-value=36 Score=21.89 Aligned_cols=12 Identities=33% Similarity=0.421 Sum_probs=9.3
Q ss_pred CeEEE-ecCCCcc
Q 047720 35 LLAWD-AGMGNGQ 46 (126)
Q Consensus 35 ~~~~D-ig~GtG~ 46 (126)
..++| +|||.|-
T Consensus 36 ~VAvD~vGAG~Ge 48 (81)
T TIGR02703 36 QVAVDAIGCKPGD 48 (81)
T ss_pred EEEEECCCCCCCC
Confidence 35678 9999983
No 266
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=27.85 E-value=76 Score=24.71 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=23.9
Q ss_pred hCCCChHH--HHHHHHhhc-CCCCeEEEecCCCcccchhHh
Q 047720 15 ARPTYPRE--WYSMLASLT-THHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 15 ~Rp~yp~~--l~~~l~~~~-~~~~~~~Dig~GtG~~~~~L~ 52 (126)
|.| ||.+ +.+.+...+ .+...+++.++|||.....|.
T Consensus 7 y~~-r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~ 46 (289)
T smart00488 7 YEP-YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLC 46 (289)
T ss_pred CCC-CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHH
Confidence 345 5654 455666554 355678999999998654443
No 267
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=27.85 E-value=76 Score=24.71 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=23.9
Q ss_pred hCCCChHH--HHHHHHhhc-CCCCeEEEecCCCcccchhHh
Q 047720 15 ARPTYPRE--WYSMLASLT-THHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 15 ~Rp~yp~~--l~~~l~~~~-~~~~~~~Dig~GtG~~~~~L~ 52 (126)
|.| ||.+ +.+.+...+ .+...+++.++|||.....|.
T Consensus 7 y~~-r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~ 46 (289)
T smart00489 7 YEP-YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLC 46 (289)
T ss_pred CCC-CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHH
Confidence 345 5654 455666554 355678999999998654443
No 268
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=27.18 E-value=36 Score=27.12 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=7.9
Q ss_pred CCeEEEecCCCc
Q 047720 34 HLLAWDAGMGNG 45 (126)
Q Consensus 34 ~~~~~Dig~GtG 45 (126)
.-++||||||.-
T Consensus 103 ~v~glDIGTGAs 114 (299)
T PF05971_consen 103 KVRGLDIGTGAS 114 (299)
T ss_dssp --EEEEES-TTT
T ss_pred ceEeecCCccHH
Confidence 347899999985
No 269
>PRK09273 hypothetical protein; Provisional
Probab=26.93 E-value=67 Score=24.42 Aligned_cols=36 Identities=25% Similarity=0.202 Sum_probs=18.4
Q ss_pred CCCChHHHHHHHHhhcC-CCCeEEEecCCCcccchhHh
Q 047720 16 RPTYPREWYSMLASLTT-HHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 16 Rp~yp~~l~~~l~~~~~-~~~~~~Dig~GtG~~~~~L~ 52 (126)
..+||+- ...++..+. +...-.=++||||+-...-+
T Consensus 45 s~dYpd~-a~~vA~~V~~g~~d~GIliCGTGiG~siAA 81 (211)
T PRK09273 45 QLTYVQN-GIMASILLNSKAVDFVVTGCGTGQGAMLAL 81 (211)
T ss_pred CCChHHH-HHHHHHHHHcCCCCEEEEEcCcHHHHHHHH
Confidence 4678863 333333332 22222347899997544433
No 270
>TIGR02704 carboxysome_B carboxysome peptide B. This model distinguishes one of two closely related paralogs encoded by nearby genes in the carboxysome operons of a number of cyanobacteria and chemoautotrophic bacteria. More distantly related proteins, also belonging to Pfam family pfam03319, participate in other types of shell such as the ethanolamine degradation organelle.
Probab=26.41 E-value=40 Score=21.66 Aligned_cols=11 Identities=36% Similarity=0.489 Sum_probs=8.9
Q ss_pred CeEEE-ecCCCc
Q 047720 35 LLAWD-AGMGNG 45 (126)
Q Consensus 35 ~~~~D-ig~GtG 45 (126)
..++| +|||.|
T Consensus 35 ~VAvD~vGAG~G 46 (80)
T TIGR02704 35 SVAVDPVGAPEG 46 (80)
T ss_pred EEEEECCCCCCC
Confidence 45678 999998
No 271
>cd01614 EutN_CcmL Ethanolamine utilisation protein and carboxysome structural protein domain family. Beside the Escherichia coli ethanolamine utilization protein EutN and the Synechocystis sp. carboxysome (beta-type) structural protein CcmL, this family also includes alpha-type carboxysome structural proteins CsoS4A and CsoS4B (previously known as OrfA and OrfB), propanediol utilizationprotein PduN, and some hypothetical homologous of various bacterial microcompartments. The carboxysome, a polyhedral organelle, participates in carbon fixation by sequestering enzymes. It is the prototypical bacterial microcompartment. Its enzymatic components, ribulose bisphosphate carboxylase/oxygenase(RuBisCO) and carbonic anhydrase (CA), are surrounded by a polyhedral protein shell. Similarly, the ethanolamine utilization (eut) microcompartment, and the 1,2-propanediol utilization (pdu) microcompartment encapsulate the enzymes necessary for the process of cobalamin-dependent ethanolamine degradation,
Probab=26.33 E-value=40 Score=21.73 Aligned_cols=12 Identities=50% Similarity=0.805 Sum_probs=9.4
Q ss_pred CeEEE-ecCCCcc
Q 047720 35 LLAWD-AGMGNGQ 46 (126)
Q Consensus 35 ~~~~D-ig~GtG~ 46 (126)
..++| ||||.|-
T Consensus 41 ~VA~D~vGAG~Ge 53 (83)
T cd01614 41 LVAVDPVGAGVGE 53 (83)
T ss_pred EEEEECCCCCCCC
Confidence 45688 9999983
No 272
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=25.79 E-value=39 Score=21.73 Aligned_cols=21 Identities=5% Similarity=0.150 Sum_probs=16.6
Q ss_pred eecceeCHHHHHHhHhhHHHH
Q 047720 61 DMPKEVSFEGFLRMLRSFSAV 81 (126)
Q Consensus 61 ~i~~~~tl~~l~gYl~TWSay 81 (126)
.+...|||++|+..|.+=..+
T Consensus 2 ~v~~~~TL~~lid~L~~~~~~ 22 (84)
T PF08825_consen 2 EVSPSWTLQDLIDSLCEKPEF 22 (84)
T ss_dssp EESTTSBSHHHHHHHHHSTTT
T ss_pred CcCccchHHHHHHHHHhChhh
Confidence 467789999999999775434
No 273
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=25.27 E-value=1.1e+02 Score=20.06 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=24.7
Q ss_pred eeecceeCHHHHHHhHhhHHHHHHHHHhCCC--cchHHHHHHHHHHh
Q 047720 60 LDMPKEVSFEGFLRMLRSFSAVNTAVEQGVD--LLSEKVVKELETAW 104 (126)
Q Consensus 60 ~~i~~~~tl~~l~gYl~TWSay~~~~~~g~d--~l~e~~~~~l~~~w 104 (126)
..+.-.||-++.+.-++=|.++..+-++|.+ -+. +-.++|++.-
T Consensus 5 YPld~dWsteEii~Vi~F~~~VE~AYE~gV~r~~ll-~~Y~~FK~VV 50 (88)
T PF05256_consen 5 YPLDPDWSTEEIIDVINFFNAVEKAYEKGVDREELL-DAYRRFKKVV 50 (88)
T ss_dssp --------HHHHHHHHHHHHHHHHHHTT-EEHHHHH-HHHHHHHHH-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccCcHHHHH-HHHHHHHHHc
Confidence 3456689999999999999999998888643 222 1345555544
No 274
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=25.01 E-value=19 Score=28.36 Aligned_cols=63 Identities=22% Similarity=0.189 Sum_probs=39.9
Q ss_pred HHHHHHHHhhcCCCCeEEEecCCCcccchhHhhcCCCc-------ceeecceeCHHHHHHhHhhHHHHHH
Q 047720 21 REWYSMLASLTTHHLLAWDAGMGNGQAALGVRFEGQPL-------ELDMPKEVSFEGFLRMLRSFSAVNT 83 (126)
Q Consensus 21 ~~l~~~l~~~~~~~~~~~Dig~GtG~~~~~L~~~~~~~-------~~~i~~~~tl~~l~gYl~TWSay~~ 83 (126)
+++.+.|.+.+..+.-++=+|+|||..+..-.+.|.-+ .|.|--.-|+..|+-|-.+=.-+..
T Consensus 1 ~eil~~l~~~i~~~~pIig~gaGtGlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~e 70 (268)
T PF09370_consen 1 KEILDRLRAQIKAGKPIIGAGAGTGLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVME 70 (268)
T ss_dssp -HHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHH
T ss_pred ChHHHHHHHHHhCCCceEEEeeccchhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHH
Confidence 36777888877777889999999999998887666433 3445555666666666554444443
No 275
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=24.87 E-value=47 Score=20.27 Aligned_cols=17 Identities=12% Similarity=-0.025 Sum_probs=13.1
Q ss_pred CCeEEEecCCCcccchh
Q 047720 34 HLLAWDAGMGNGQAALG 50 (126)
Q Consensus 34 ~~~~~Dig~GtG~~~~~ 50 (126)
..=|.+|.||.+|-.+.
T Consensus 9 ~hWVA~L~CGH~QHvRH 25 (61)
T PF12088_consen 9 GHWVAELSCGHTQHVRH 25 (61)
T ss_pred CCEEEEecccccccccC
Confidence 34578999999997653
No 276
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=24.65 E-value=35 Score=26.23 Aligned_cols=48 Identities=23% Similarity=0.149 Sum_probs=26.7
Q ss_pred hhHHHHHHhhhCCCChHHHHHHHHhhcC----CCCeEEEecCCCcccchhHhhcC
Q 047720 5 FNKQAKLYLDARPTYPREWYSMLASLTT----HHLLAWDAGMGNGQAALGVRFEG 55 (126)
Q Consensus 5 F~~~a~~Y~~~Rp~yp~~l~~~l~~~~~----~~~~~~Dig~GtG~~~~~L~~~~ 55 (126)
|...+..|..-+..--. +.|+..++ ...+|||+-||-|.-+..||.-|
T Consensus 46 F~~g~~~~R~~~~~g~~---~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G 97 (234)
T PF04445_consen 46 FHPGAAAYRRKHGGGKG---DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLG 97 (234)
T ss_dssp SSSHHHHHHHHHSSGGG---SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT
T ss_pred cCCcHHHHHHhhcCCCc---cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccC
Confidence 55555556553333212 23333332 23589999999999999999665
No 277
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=24.54 E-value=25 Score=22.50 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=0.0
Q ss_pred EEecCCCcccchhHhhc
Q 047720 38 WDAGMGNGQAALGVRFE 54 (126)
Q Consensus 38 ~Dig~GtG~~~~~L~~~ 54 (126)
|+|||..|..|..+++.
T Consensus 1 lEiG~~~G~st~~l~~~ 17 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASA 17 (106)
T ss_dssp -----------------
T ss_pred Ccccccccccccccccc
Confidence 58999999999888854
No 278
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=24.36 E-value=69 Score=22.83 Aligned_cols=49 Identities=16% Similarity=0.100 Sum_probs=30.8
Q ss_pred CCeEEE-----ecCCCcccchhHh---------------------hcCCCcceeecceeCHHHHHHhHhhHHHHHHHHHh
Q 047720 34 HLLAWD-----AGMGNGQAALGVR---------------------FEGQPLELDMPKEVSFEGFLRMLRSFSAVNTAVEQ 87 (126)
Q Consensus 34 ~~~~~D-----ig~GtG~~~~~L~---------------------~~~~~~~~~i~~~~tl~~l~gYl~TWSay~~~~~~ 87 (126)
...+.| .|||+..++..++ ++..-|+....+.|--+|-+- +|...|+++
T Consensus 76 ~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kIkNteIAKeL~LPPVKLHCSMLAEDAIK-----aAikdyk~K 150 (157)
T KOG3361|consen 76 SGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKIKNTEIAKELSLPPVKLHCSMLAEDAIK-----AAIKDYKEK 150 (157)
T ss_pred CCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhcccHHHHHhccCCchhhhhHHHHHHHHH-----HHHHHHHHh
Confidence 344666 6999999998888 111122666677777666553 456666554
No 279
>PF08398 Parvo_coat_N: Parvovirus coat protein VP1; InterPro: IPR013607 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This is the N-terminal region of the Parvovirus VP1 coat protein []; its function is not known. ; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=24.36 E-value=1.2e+02 Score=18.73 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=15.3
Q ss_pred HHHHHHHhCCCc------chHHHHHHHHHHh
Q 047720 80 AVNTAVEQGVDL------LSEKVVKELETAW 104 (126)
Q Consensus 80 ay~~~~~~g~d~------l~e~~~~~l~~~w 104 (126)
+|....+.|.+| .+++|+++|++.+
T Consensus 32 aY~~~lk~G~NPY~~~n~AD~~f~~~l~~d~ 62 (64)
T PF08398_consen 32 AYDELLKHGDNPYLHFNHADEEFIKELKDDS 62 (64)
T ss_pred HHHHHHHcCCCCceeccHhhHHHHHHHHhcc
Confidence 456666655443 4556777777655
No 280
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=24.29 E-value=36 Score=27.80 Aligned_cols=20 Identities=25% Similarity=0.139 Sum_probs=18.2
Q ss_pred CeEEEecCCCcccchhHhhc
Q 047720 35 LLAWDAGMGNGQAALGVRFE 54 (126)
Q Consensus 35 ~~~~Dig~GtG~~~~~L~~~ 54 (126)
-++||+-||||..+...+.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e 65 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHE 65 (374)
T ss_pred CEEEECCCchhHHHHHHHhh
Confidence 47999999999999999976
No 281
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=23.92 E-value=80 Score=23.70 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=25.9
Q ss_pred CCCChHHHHHHHHhhcCCCCeEEEecCCCcc
Q 047720 16 RPTYPREWYSMLASLTTHHLLAWDAGMGNGQ 46 (126)
Q Consensus 16 Rp~yp~~l~~~l~~~~~~~~~~~Dig~GtG~ 46 (126)
-|.+.-.+-.||..++++..+-+|||+.-|.
T Consensus 62 npnfdlgmrhwivnhckhdttyidiganvgt 92 (286)
T PF05575_consen 62 NPNFDLGMRHWIVNHCKHDTTYIDIGANVGT 92 (286)
T ss_pred CCCCccchhHhhhhhccCCceEEEecccccc
Confidence 4777777888999999999999999986653
No 282
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.64 E-value=1.5e+02 Score=22.96 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCcccchhHhhcCCCcceeecceeCHHHH
Q 047720 33 HHLLAWDAGMGNGQAALGVRFEGQPLELDMPKEVSFEGF 71 (126)
Q Consensus 33 ~~~~~~Dig~GtG~~~~~L~~~~~~~~~~i~~~~tl~~l 71 (126)
...+++|||.=||-.+...|...++-.-.+..+++-+.+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~ 111 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAY 111 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHH
Confidence 456899999999988877774442222233344444444
No 283
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=23.56 E-value=65 Score=25.85 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=19.5
Q ss_pred hcCCCCeEEEecCCCcccchhHh
Q 047720 30 LTTHHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 30 ~~~~~~~~~Dig~GtG~~~~~L~ 52 (126)
++.+.+.++|+|+.+|--|-.|.
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLV 230 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLV 230 (358)
T ss_pred hhcCCceeeecccCCCccchhhh
Confidence 34578899999999998888887
No 284
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=23.11 E-value=99 Score=23.56 Aligned_cols=26 Identities=8% Similarity=-0.102 Sum_probs=20.1
Q ss_pred hHHHHHHHHhhcCCCCeEEEecCCCc
Q 047720 20 PREWYSMLASLTTHHLLAWDAGMGNG 45 (126)
Q Consensus 20 p~~l~~~l~~~~~~~~~~~Dig~GtG 45 (126)
++++.+...........++|||+++.
T Consensus 23 ~~~~~~~a~~~~~~GAdiIDvG~~st 48 (258)
T cd00423 23 LDKALEHARRMVEEGADIIDIGGEST 48 (258)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCcC
Confidence 56666666666667788999999986
No 285
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=22.52 E-value=77 Score=20.27 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=16.0
Q ss_pred CChHHHHHHHHhhcC---CCCeEE-E-ecCCCc
Q 047720 18 TYPREWYSMLASLTT---HHLLAW-D-AGMGNG 45 (126)
Q Consensus 18 ~yp~~l~~~l~~~~~---~~~~~~-D-ig~GtG 45 (126)
.-|+++++.++++.- .-.++- | =||+||
T Consensus 27 ~~p~~~VeaMLe~l~~kGkverv~~~~~gC~sG 59 (78)
T PRK15431 27 NTPQPMINAMLQQLESMGKAVRIQEEPDGCLSG 59 (78)
T ss_pred CcCHHHHHHHHHHHHHCCCeEeeccCCCCCCCC
Confidence 347788887777532 223333 2 378766
No 286
>PRK04387 hypothetical protein; Provisional
Probab=22.43 E-value=2.2e+02 Score=18.71 Aligned_cols=45 Identities=27% Similarity=0.338 Sum_probs=31.8
Q ss_pred eeecceeCHHHHHHhHhhHHHHHHHHHhCCC--cchHHHHHHHHHHhC
Q 047720 60 LDMPKEVSFEGFLRMLRSFSAVNTAVEQGVD--LLSEKVVKELETAWG 105 (126)
Q Consensus 60 ~~i~~~~tl~~l~gYl~TWSay~~~~~~g~d--~l~e~~~~~l~~~wg 105 (126)
..+.-.||-++++.-+.=|.++..+-++|.+ -+. +..+++++.-+
T Consensus 5 YPld~dWsteEii~Vi~F~~~VE~aYE~gv~re~ll-~~Y~~FK~VVp 51 (90)
T PRK04387 5 YPLDLDWSTEEMISVLHFFNAVEKAYEKGVDAEELL-DAYRRFKEIVP 51 (90)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHhcC
Confidence 3456789999999999999999998888643 222 13455555443
No 287
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=22.24 E-value=57 Score=27.54 Aligned_cols=21 Identities=10% Similarity=0.079 Sum_probs=17.3
Q ss_pred CCCCeEEEecCCCcccchhHh
Q 047720 32 THHLLAWDAGMGNGQAALGVR 52 (126)
Q Consensus 32 ~~~~~~~Dig~GtG~~~~~L~ 52 (126)
.+..+|||++||+|-=|..|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la 132 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIA 132 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHH
Confidence 366899999999997777666
No 288
>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process
Probab=22.21 E-value=32 Score=21.30 Aligned_cols=17 Identities=12% Similarity=0.258 Sum_probs=13.8
Q ss_pred EEEEEEEEEEEEeeeCC
Q 047720 110 VRTIIYKTFMLVGKVKA 126 (126)
Q Consensus 110 ~~~v~wp~f~~~gr~~~ 126 (126)
+..|-=|.|+.++|||.
T Consensus 51 ~~giFTPMyl~v~RKP~ 67 (67)
T PF08498_consen 51 KTGIFTPMYLFVARKPE 67 (67)
T ss_pred hcCCcCchhheeeccCC
Confidence 45577799999999984
No 289
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=22.11 E-value=52 Score=28.07 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=16.6
Q ss_pred HHHHHHhhcCCCCeEEEecCCCccc
Q 047720 23 WYSMLASLTTHHLLAWDAGMGNGQA 47 (126)
Q Consensus 23 l~~~l~~~~~~~~~~~Dig~GtG~~ 47 (126)
+.+...........++||||+++.-
T Consensus 167 i~~~A~~~~~~GADIIDIG~~st~p 191 (499)
T TIGR00284 167 IEGLAARMERDGADMVALGTGSFDD 191 (499)
T ss_pred HHHHHHHHHHCCCCEEEECCCcCCC
Confidence 3344344455677899999998743
No 290
>PF03341 Pox_mRNA-cap: Poxvirus mRNA capping enzyme, small subunit; InterPro: IPR005009 Vaccinia virus, the prototypic poxvirus, possesses a double-stranded DNA genome of 191,686 base pairs capable of encoding approximately 200 proteins. Virion enzymes produce mature viral mRNA with eukaryotic features, including a 5' cap and a 3' poly(A) tail. V. virus mRNA capping enzyme is a multifunctional protein with RNA triphosphatase, RNA guanylyltransferase, RNA (guanine-7) methyltransferase, and transcription termination factor activities. The protein is a heterodimer of 95kDa and 33kDa subunits encoded by the v.virus D1 and D12 genes, respectively. The capping reaction entails transfer of GMP from GTP to the 5'-diphosphate end of mRNA via a covalent enzyme-(lysyl-GMP) intermediate.; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0006370 mRNA capping; PDB: 2VDW_F.
Probab=21.74 E-value=62 Score=25.22 Aligned_cols=38 Identities=13% Similarity=0.281 Sum_probs=24.1
Q ss_pred eeCHHHHHHhHhhHHHHHHHHHh-C------CCcchHHHHHHHHH
Q 047720 65 EVSFEGFLRMLRSFSAVNTAVEQ-G------VDLLSEKVVKELET 102 (126)
Q Consensus 65 ~~tl~~l~gYl~TWSay~~~~~~-g------~d~l~e~~~~~l~~ 102 (126)
.-+++.|+.|+|+----++|++. + .++++.+|++++++
T Consensus 203 ~~n~~~f~~~vr~~tks~~Wkdsnnv~f~il~~~ve~eFi~kfl~ 247 (287)
T PF03341_consen 203 KKNIDKFMTHVRSVTKSNAWKDSNNVQFSILKDSVEKEFIDKFLE 247 (287)
T ss_dssp HHHHHHHHHHHHHHHT-SS--GGG-S-EEEESS---HHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhcccchhhccCCceEEecCcccHHHHHHHHH
Confidence 45799999999998888889886 2 34566567777665
No 291
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=21.68 E-value=73 Score=21.88 Aligned_cols=19 Identities=0% Similarity=0.412 Sum_probs=13.6
Q ss_pred ceeecceeCHHHHHHhHhh
Q 047720 59 ELDMPKEVSFEGFLRMLRS 77 (126)
Q Consensus 59 ~~~i~~~~tl~~l~gYl~T 77 (126)
.+.+..++||.+|+.|++.
T Consensus 36 r~~v~~~~Tl~~li~~~~~ 54 (125)
T PF09358_consen 36 RIEVNGDMTLQELIDYFKE 54 (125)
T ss_dssp EEEEES--BHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHH
Confidence 4566668999999999974
No 292
>PRK15448 ethanolamine catabolic microcompartment shell protein EutN; Provisional
Probab=21.58 E-value=56 Score=21.64 Aligned_cols=11 Identities=45% Similarity=0.836 Sum_probs=8.9
Q ss_pred eEEE-ecCCCcc
Q 047720 36 LAWD-AGMGNGQ 46 (126)
Q Consensus 36 ~~~D-ig~GtG~ 46 (126)
.++| ||||.|.
T Consensus 42 VAvD~vGAG~Ge 53 (95)
T PRK15448 42 VAIDNIGAGTGE 53 (95)
T ss_pred EEEECCCCCCCC
Confidence 5688 9999983
No 293
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=21.44 E-value=47 Score=23.59 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=42.5
Q ss_pred CeEE--EecCCCcccchhHhhcCCCcceeecceeCHHHHHHhHhhHHHHHHHHHhCCCcchHHHHHHHHHHhCCC
Q 047720 35 LLAW--DAGMGNGQAALGVRFEGQPLELDMPKEVSFEGFLRMLRSFSAVNTAVEQGVDLLSEKVVKELETAWGGS 107 (126)
Q Consensus 35 ~~~~--Dig~GtG~~~~~L~~~~~~~~~~i~~~~tl~~l~gYl~TWSay~~~~~~g~d~l~e~~~~~l~~~wg~~ 107 (126)
..++ |=|.-||.+...| +|.+..+...+.++.++.+.+|..|--=- .......+.. +++++|...++..
T Consensus 32 ~lIVGiDPG~ttgiAildL--~G~~l~l~S~R~~~~~evi~~I~~~G~Pv-iVAtDV~p~P-~~V~Kia~~f~A~ 102 (138)
T PF04312_consen 32 YLIVGIDPGTTTGIAILDL--DGELLDLKSSRNMSRSEVIEWISEYGKPV-IVATDVSPPP-ETVKKIARSFNAV 102 (138)
T ss_pred CEEEEECCCceeEEEEEec--CCcEEEEEeecCCCHHHHHHHHHHcCCEE-EEEecCCCCc-HHHHHHHHHhCCc
Confidence 3444 5566667776666 45577888899999999999997652100 0000234455 4666666666554
No 294
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=21.39 E-value=63 Score=28.80 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=30.6
Q ss_pred cCCCCeEEEecCCCc---ccchhHhhcC------------CCc-ceeecceeCHH----HHHHhHhhHHH
Q 047720 31 TTHHLLAWDAGMGNG---QAALGVRFEG------------QPL-ELDMPKEVSFE----GFLRMLRSFSA 80 (126)
Q Consensus 31 ~~~~~~~~Dig~GtG---~~~~~L~~~~------------~~~-~~~i~~~~tl~----~l~gYl~TWSa 80 (126)
+.+...+|||+|-+| |++.....-+ +++ ..++...+|-+ .+..+++||.+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 456778999999999 5555544222 111 34444455544 45678888875
No 295
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=21.12 E-value=53 Score=23.59 Aligned_cols=11 Identities=27% Similarity=0.335 Sum_probs=8.1
Q ss_pred CCeEEEecCCC
Q 047720 34 HLLAWDAGMGN 44 (126)
Q Consensus 34 ~~~~~Dig~Gt 44 (126)
...++|||+|-
T Consensus 83 ~k~lVDIGTGY 93 (153)
T KOG3048|consen 83 SKFLVDIGTGY 93 (153)
T ss_pred cceeEeccCce
Confidence 35688999883
No 296
>PF15353 HECA: Headcase protein family homologue
Probab=20.20 E-value=63 Score=21.93 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=12.6
Q ss_pred hhHHHHHH----HHHhCCCcch
Q 047720 76 RSFSAVNT----AVEQGVDLLS 93 (126)
Q Consensus 76 ~TWSay~~----~~~~g~d~l~ 93 (126)
||||-.|. |.|+|.|++-
T Consensus 67 RsWse~QrrqnLWtKKGydLv~ 88 (107)
T PF15353_consen 67 RSWSEKQRRQNLWTKKGYDLVF 88 (107)
T ss_pred cCCCHHHHHHHHhHHhhhhHHH
Confidence 77888764 6677877655
Done!