Query 047722
Match_columns 138
No_of_seqs 136 out of 725
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 03:39:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047722.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047722hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.8 1.9E-19 6.4E-24 120.2 5.4 56 77-136 6-61 (63)
2 1gnf_A Transcription factor GA 99.7 6.9E-19 2.4E-23 110.9 3.8 43 77-122 3-45 (46)
3 2vut_I AREA, nitrogen regulato 99.7 5.3E-19 1.8E-23 110.0 3.1 41 79-122 2-42 (43)
4 4gat_A Nitrogen regulatory pro 99.7 6.8E-19 2.3E-23 118.4 3.8 56 76-135 7-62 (66)
5 2kae_A GATA-type transcription 99.7 1E-17 3.4E-22 114.2 3.5 51 75-127 5-55 (71)
6 4hc9_A Trans-acting T-cell-spe 99.7 1.1E-16 3.7E-21 117.4 5.7 56 76-135 57-112 (115)
7 4hc9_A Trans-acting T-cell-spe 99.5 1.8E-14 6E-19 105.6 3.2 48 77-127 4-51 (115)
8 3cw2_K Translation initiation 64.2 2.8 9.5E-05 31.0 1.6 32 77-111 102-133 (139)
9 2d74_B Translation initiation 56.3 3.1 0.00011 31.1 0.7 29 80-111 106-134 (148)
10 2yrk_A Zinc finger homeobox pr 55.3 1.5 5.2E-05 28.0 -1.0 20 96-115 7-26 (55)
11 1nee_A EIF-2-beta, probable tr 54.1 2.9 9.9E-05 30.9 0.2 28 80-110 104-131 (138)
12 1k81_A EIF-2-beta, probable tr 53.2 0.9 3.1E-05 26.3 -2.2 27 81-110 3-29 (36)
13 2iqj_A Stromal membrane-associ 51.5 8.4 0.00029 28.1 2.3 38 76-117 25-62 (134)
14 3dwd_A ADP-ribosylation factor 50.3 12 0.00042 27.9 3.1 38 76-117 36-73 (147)
15 2owa_A Arfgap-like finger doma 49.2 8.4 0.00029 28.3 2.0 37 77-117 35-71 (138)
16 2crr_A Stromal membrane-associ 47.0 11 0.00039 27.6 2.5 38 76-117 27-64 (141)
17 2crw_A ARF GAP 3, ADP-ribosyla 45.4 17 0.00058 27.1 3.2 38 76-117 27-64 (149)
18 2b0o_E UPLC1; arfgap, structur 45.1 16 0.00053 28.5 3.1 37 76-116 40-76 (301)
19 2p57_A GTPase-activating prote 38.1 12 0.00039 27.9 1.3 38 76-117 35-72 (144)
20 1dl6_A Transcription factor II 34.9 16 0.00054 22.7 1.4 31 79-114 12-42 (58)
21 3sub_A ADP-ribosylation factor 32.7 22 0.00075 27.0 2.1 37 77-117 21-57 (163)
22 2g2k_A EIF-5, eukaryotic trans 32.2 5.3 0.00018 30.5 -1.4 29 80-111 98-128 (170)
23 2olm_A Nucleoporin-like protei 31.2 22 0.00076 26.0 1.9 38 76-117 23-60 (140)
24 3k7a_M Transcription initiatio 27.2 22 0.00075 29.0 1.4 20 75-96 39-65 (345)
25 2e9h_A EIF-5, eukaryotic trans 26.9 7.8 0.00027 29.2 -1.3 29 80-111 105-135 (157)
26 3jue_A Arfgap with coiled-coil 25.8 47 0.0016 26.9 3.1 39 74-116 41-79 (368)
27 3mhs_E SAGA-associated factor 21.0 13 0.00046 26.0 -1.0 9 103-111 76-84 (96)
28 2l1q_A Liver-expressed antimic 20.9 26 0.0009 20.8 0.5 6 91-96 2-7 (40)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.78 E-value=1.9e-19 Score=120.20 Aligned_cols=56 Identities=30% Similarity=0.686 Sum_probs=47.3
Q ss_pred CCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcccchhhhhcccccccccCC
Q 047722 77 PYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSNIDQNSNNQ 136 (138)
Q Consensus 77 ~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~~~~~~~~~~~~~~~ 136 (138)
....|+ +|++++||+||+||+|+ +|||||||+|+++++.|++.. ....|+.|+|+-
T Consensus 6 ~~~~C~--~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~-~~~~i~~R~Rk~ 61 (63)
T 3dfx_A 6 AGTSCA--NCQTTTTTLWRRNANGD-PVCNACGLYYKLHNINRPLTM-KKEGIQTRNRKM 61 (63)
T ss_dssp TTCCCT--TTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGG-CCSSCCCCC---
T ss_pred CCCcCC--CcCCCCCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCc-CCCccccccCCC
Confidence 446799 99999999999999996 999999999999999888775 567799998864
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.74 E-value=6.9e-19 Score=110.92 Aligned_cols=43 Identities=37% Similarity=0.848 Sum_probs=39.4
Q ss_pred CCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcccchh
Q 047722 77 PYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAK 122 (138)
Q Consensus 77 ~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~ 122 (138)
..+.|+ +|++++||+||+||+|+ +|||||||||+++++.|++.
T Consensus 3 ~~~~C~--~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~ 45 (46)
T 1gnf_A 3 EARECV--NCGATATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLI 45 (46)
T ss_dssp CSCCCT--TTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCC
T ss_pred CCCCCC--CcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCCCCCC
Confidence 456799 99999999999999995 99999999999999988864
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.74 E-value=5.3e-19 Score=110.00 Aligned_cols=41 Identities=46% Similarity=0.946 Sum_probs=37.9
Q ss_pred ccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcccchh
Q 047722 79 KRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAK 122 (138)
Q Consensus 79 ~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~ 122 (138)
+.|+ +|++++||+||+||+|+ +|||||||+|+++++.|+..
T Consensus 2 ~~C~--~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~ 42 (43)
T 2vut_I 2 TTCT--NCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLS 42 (43)
T ss_dssp CCCS--SSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSCCCCC
T ss_pred CcCC--ccCCCCCCccccCCCCC-cccHHHHHHHHHhCCCCCCC
Confidence 5699 99999999999999996 99999999999999988764
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.74 E-value=6.8e-19 Score=118.39 Aligned_cols=56 Identities=39% Similarity=0.719 Sum_probs=48.7
Q ss_pred CCCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcccchhhhhcccccccccC
Q 047722 76 YPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSNIDQNSNN 135 (138)
Q Consensus 76 ~~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~~~~~~~~~~~~~~ 135 (138)
.....|+ +|++++||+||+||+|. +|||||||||+++++.|+... +...|+.++|+
T Consensus 7 ~~~~~C~--~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~-k~~~ik~R~R~ 62 (66)
T 4gat_A 7 NGPTTCT--NCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSL-KTDVIKKRNRN 62 (66)
T ss_dssp SSSCCCT--TTCCCCCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGG-CCSCCCCCCCS
T ss_pred CCCCCCC--CCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhh-ccccccccccC
Confidence 3567899 99999999999999995 999999999999999888776 55677777765
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.69 E-value=1e-17 Score=114.16 Aligned_cols=51 Identities=27% Similarity=0.435 Sum_probs=41.4
Q ss_pred CCCCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcccchhhhhcc
Q 047722 75 GYPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETS 127 (138)
Q Consensus 75 ~~~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~~~~~~ 127 (138)
......|+ +|++++||+||+|+.+..+|||||||||+++++.|++......
T Consensus 5 ~~~~~~C~--nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~~~ 55 (71)
T 2kae_A 5 NKKSFQCS--NCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKY 55 (71)
T ss_dssp ---CCCCS--SSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHHHH
T ss_pred CCCCCcCC--ccCCCCCCccccCCCCCCccchHHHHHHHHhCCCCCcccchhh
Confidence 34567899 9999999999995444449999999999999999998877653
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.65 E-value=1.1e-16 Score=117.45 Aligned_cols=56 Identities=30% Similarity=0.682 Sum_probs=48.1
Q ss_pred CCCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcccchhhhhcccccccccC
Q 047722 76 YPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSNIDQNSNN 135 (138)
Q Consensus 76 ~~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~~~~~~~~~~~~~~ 135 (138)
.....|+ +|++++||+||+||+| .+|||||||||++|++.|++... ...|+.|+++
T Consensus 57 ~~~~~C~--~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~-~~~i~~r~r~ 112 (115)
T 4hc9_A 57 RAGTSCA--NCQTTTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMK-KEGIQTRNRK 112 (115)
T ss_dssp CTTCCCT--TTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGC-CSSCCCCC--
T ss_pred cccccCC--CcCCCCcceeEECCCC-CCcchHHHHHHHHhCCCCCcccc-ccchhhcccc
Confidence 3457899 9999999999999999 99999999999999998887664 5678888875
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.46 E-value=1.8e-14 Score=105.63 Aligned_cols=48 Identities=33% Similarity=0.761 Sum_probs=41.3
Q ss_pred CCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcccchhhhhcc
Q 047722 77 PYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETS 127 (138)
Q Consensus 77 ~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~~~~~~ 127 (138)
..+.|+ +|++++||+||+|+.| .+|||||||||+.+++.|+..+.+..
T Consensus 4 ~~~~C~--~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKKR 51 (115)
T 4hc9_A 4 MGRECV--NCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRR 51 (115)
T ss_dssp --CCCT--TTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCCC
T ss_pred CCCCCC--CCCCccCCcceECCCC-CCcCcchhhhhhhccccccccccccc
Confidence 457899 9999999999999999 89999999999999998887655443
No 8
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=64.19 E-value=2.8 Score=31.03 Aligned_cols=32 Identities=28% Similarity=0.616 Sum_probs=22.5
Q ss_pred CCccccCCCCCCCCCCccccCCCCCcchhhHHHHH
Q 047722 77 PYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIK 111 (138)
Q Consensus 77 ~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~ 111 (138)
.--.|. .|+..+|-+-+++..- -.-|+|||-.
T Consensus 102 ~yVlC~--~C~sPdT~l~k~~r~~-~l~C~ACGa~ 133 (139)
T 3cw2_K 102 AYVECS--TCKSLDTILKKEKKSW-YIVCLACGAQ 133 (139)
T ss_dssp CCSSCC--SSSSSCCCSCSSCSTT-TSSCCC----
T ss_pred HeeECC--CCCCcCcEEEEeCCeE-EEEecCCCCC
Confidence 334588 9999999999976544 6889999953
No 9
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=56.28 E-value=3.1 Score=31.14 Aligned_cols=29 Identities=31% Similarity=0.697 Sum_probs=23.5
Q ss_pred cccCCCCCCCCCCccccCCCCCcchhhHHHHH
Q 047722 80 RCTNYNCNTNDTPMWRRGPLGPKTLCNACGIK 111 (138)
Q Consensus 80 ~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~ 111 (138)
.|. .|+..+|-+-+++..- -.-|+|||-.
T Consensus 106 lC~--~C~sPdT~L~k~~r~~-~l~C~ACGa~ 134 (148)
T 2d74_B 106 ICP--VCGSPDTKIIKRDRFH-FLKCEACGAE 134 (148)
T ss_dssp SCS--SSCCTTCCCCBSSSSB-CCCCSSSCCC
T ss_pred ECC--CCCCcCcEEEEeCCEE-EEEecCCCCC
Confidence 388 9999999999876444 6889999853
No 10
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=55.32 E-value=1.5 Score=28.01 Aligned_cols=20 Identities=40% Similarity=0.861 Sum_probs=15.1
Q ss_pred cCCCCCcchhhHHHHHHHhh
Q 047722 96 RGPLGPKTLCNACGIKYRKE 115 (138)
Q Consensus 96 rGp~G~~~LCNACGL~~~k~ 115 (138)
.+|+||++-|.-||+.|..+
T Consensus 7 ~~~~~P~~eC~lC~vkYs~r 26 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSAR 26 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCSS
T ss_pred CCCCCCCccccccCcccccc
Confidence 46788888888888877543
No 11
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=54.08 E-value=2.9 Score=30.89 Aligned_cols=28 Identities=39% Similarity=0.851 Sum_probs=23.2
Q ss_pred cccCCCCCCCCCCccccCCCCCcchhhHHHH
Q 047722 80 RCTNYNCNTNDTPMWRRGPLGPKTLCNACGI 110 (138)
Q Consensus 80 ~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL 110 (138)
.|. .|+..+|-+-+++..- -.-|+|||-
T Consensus 104 lC~--~C~sPdT~l~k~~r~~-~l~C~ACGa 131 (138)
T 1nee_A 104 ICH--ECNRPDTRIIREGRIS-LLKCEACGA 131 (138)
T ss_dssp HHT--CCSSCSSCCEEETTTT-EEECSTTSC
T ss_pred ECC--CCCCcCcEEEEcCCeE-EEEccCCCC
Confidence 388 9999999999876444 688999984
No 12
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=53.23 E-value=0.9 Score=26.26 Aligned_cols=27 Identities=33% Similarity=0.781 Sum_probs=20.7
Q ss_pred ccCCCCCCCCCCccccCCCCCcchhhHHHH
Q 047722 81 CTNYNCNTNDTPMWRRGPLGPKTLCNACGI 110 (138)
Q Consensus 81 C~~~~C~t~~TP~WRrGp~G~~~LCNACGL 110 (138)
|. .|+..+|-+-+++..- -.-|+|||-
T Consensus 3 C~--~C~~peT~l~~~~~~~-~l~C~aCG~ 29 (36)
T 1k81_A 3 CR--ECGKPDTKIIKEGRVH-LLKCMACGA 29 (36)
T ss_dssp CS--SSCSCEEEEEEETTEE-EEEEETTTE
T ss_pred Cc--CCCCCCcEEEEeCCcE-EEEhhcCCC
Confidence 77 8999999998865333 456999984
No 13
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=51.55 E-value=8.4 Score=28.09 Aligned_cols=38 Identities=24% Similarity=0.510 Sum_probs=31.7
Q ss_pred CCCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhc
Q 047722 76 YPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEE 117 (138)
Q Consensus 76 ~~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~ 117 (138)
...+.|. +|++.. |.|-.=..| ..+|-.|.--.+..++
T Consensus 25 p~N~~Ca--DCg~~~-P~WaS~n~G-vfiC~~CsgiHR~lG~ 62 (134)
T 2iqj_A 25 EDNKFCA--DCQSKG-PRWASWNIG-VFICIRCAGIHRNLGV 62 (134)
T ss_dssp GGGGBCT--TTCCBS-CCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred cCCCcCC--cCcCCC-CCeEEecCC-EEEhHhhhHHHhcCCC
Confidence 4668899 999875 999999999 9999999887777653
No 14
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=50.27 E-value=12 Score=27.89 Aligned_cols=38 Identities=21% Similarity=0.436 Sum_probs=31.7
Q ss_pred CCCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhc
Q 047722 76 YPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEE 117 (138)
Q Consensus 76 ~~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~ 117 (138)
...+.|. +|+... |.|-.=..| ..||-.|.-..+..++
T Consensus 36 p~N~~Ca--DCga~~-P~WaS~nlG-vfiC~~CSgiHR~LG~ 73 (147)
T 3dwd_A 36 DENNVCF--ECGAFN-PQWVSVTYG-IWICLECSGRHRGLGV 73 (147)
T ss_dssp TTTTBCT--TTCCBS-CCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred cCCCccC--CCCCCC-CCeEEeccc-EeEhHhhChHHhcCCC
Confidence 3567898 999875 999999999 9999999887777654
No 15
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=49.18 E-value=8.4 Score=28.33 Aligned_cols=37 Identities=22% Similarity=0.582 Sum_probs=31.1
Q ss_pred CCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhc
Q 047722 77 PYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEE 117 (138)
Q Consensus 77 ~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~ 117 (138)
..+.|. +|++.. |.|-.=..| ..+|-.|.-..+..++
T Consensus 35 ~N~~Ca--DCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~ 71 (138)
T 2owa_A 35 ENRTCF--DCESRN-PTWLSLSFA-VFICLNCSSDHRKMGV 71 (138)
T ss_dssp GGGBCT--TTCCBS-CCEEETTTT-EEECHHHHHHHHTTCT
T ss_pred CCCcCC--CCcCCC-CCeEEecCC-EEEhHhhhHHHhCCCC
Confidence 567898 999875 999999999 9999999887777654
No 16
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.01 E-value=11 Score=27.59 Aligned_cols=38 Identities=24% Similarity=0.506 Sum_probs=31.1
Q ss_pred CCCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhc
Q 047722 76 YPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEE 117 (138)
Q Consensus 76 ~~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~ 117 (138)
...+.|. +|++. -|.|-.=..| ..+|-.|.--.+..++
T Consensus 27 p~N~~Ca--DCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~ 64 (141)
T 2crr_A 27 EDNKYCA--DCEAK-GPRWASWNIG-VFICIRCAGIHRNLGV 64 (141)
T ss_dssp GGGSSCS--SSCCS-SCCSEETTTT-EECCHHHHHHHHHHCT
T ss_pred ccCCcCC--CCCCC-CCCeEEeccC-eEEhhhhhHhHhcCCC
Confidence 4567899 99986 4999998999 8999999877777653
No 17
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.44 E-value=17 Score=27.05 Aligned_cols=38 Identities=26% Similarity=0.501 Sum_probs=31.3
Q ss_pred CCCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhc
Q 047722 76 YPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEE 117 (138)
Q Consensus 76 ~~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~ 117 (138)
...+.|. +|+.. -|.|-.=..| ..+|-.|.-..+..++
T Consensus 27 p~N~~Ca--DCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~ 64 (149)
T 2crw_A 27 PTNKVCF--DCGAK-NPSWASITYG-VFLCIDCSGSHRSLGV 64 (149)
T ss_dssp TTTSBCS--SSCCB-SCCCEETTTT-EECCHHHHHHHHHHCT
T ss_pred cCCCcCC--CCcCC-CCCcEEeccC-EEEchhcchhhccCCC
Confidence 3567898 99975 5999999999 8999999887777654
No 18
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=45.12 E-value=16 Score=28.49 Aligned_cols=37 Identities=27% Similarity=0.568 Sum_probs=30.1
Q ss_pred CCCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhh
Q 047722 76 YPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEE 116 (138)
Q Consensus 76 ~~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~ 116 (138)
...+.|. .|+... |.|-.-..| ..+|-.|.-..+..+
T Consensus 40 ~~n~~c~--dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~lg 76 (301)
T 2b0o_E 40 PGNSQCC--DCGAAD-PTWLSTNLG-VLTCIQCSGVHRELG 76 (301)
T ss_dssp TTTTBCT--TTCCBS-CCEEETTTT-EEECHHHHHHHHHHC
T ss_pred CCCCcCC--CCCCCC-CCeEEeecC-eEEcHHHHHHHHhhC
Confidence 3567898 999965 999999999 999999966666544
No 19
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=38.07 E-value=12 Score=27.91 Aligned_cols=38 Identities=26% Similarity=0.512 Sum_probs=31.4
Q ss_pred CCCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhc
Q 047722 76 YPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEE 117 (138)
Q Consensus 76 ~~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~ 117 (138)
...+.|. +|+... |.|-.=..| ..+|-.|.-..+..++
T Consensus 35 p~N~~Ca--DCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~ 72 (144)
T 2p57_A 35 PTNKACF--DCGAKN-PSWASITYG-VFLCIDCSGVHRSLGV 72 (144)
T ss_dssp GGGGBCT--TTCCBS-CCEEEGGGT-EEECHHHHHHHHHHCT
T ss_pred CCCCcCC--CCcCCC-CCeEEeccC-EEEhhhchHHHcCCCC
Confidence 3567898 999865 999988889 8999999888777654
No 20
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=34.87 E-value=16 Score=22.74 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=19.5
Q ss_pred ccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHh
Q 047722 79 KRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRK 114 (138)
Q Consensus 79 ~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k 114 (138)
..|- .|+... +-.....| ...|..|||-+.-
T Consensus 12 ~~Cp--~C~~~~--lv~D~~~g-e~vC~~CGlVl~e 42 (58)
T 1dl6_A 12 VTCP--NHPDAI--LVEDYRAG-DMICPECGLVVGD 42 (58)
T ss_dssp CSBT--TBSSSC--CEECSSSC-CEECTTTCCEECC
T ss_pred ccCc--CCCCCc--eeEeCCCC-eEEeCCCCCEEec
Confidence 3577 787543 44444556 7888888876543
No 21
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=32.74 E-value=22 Score=27.01 Aligned_cols=37 Identities=24% Similarity=0.494 Sum_probs=30.6
Q ss_pred CCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhc
Q 047722 77 PYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEE 117 (138)
Q Consensus 77 ~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~ 117 (138)
..+.|. .|++. -|.|-.=..| ..||-.|.-..+..++
T Consensus 21 ~N~~Ca--DCga~-~P~WaS~nlG-vflCi~CSGiHR~LG~ 57 (163)
T 3sub_A 21 SNNKCF--DCGIS-NPDWVSVNHG-IFLCINCSGVHRSLGV 57 (163)
T ss_dssp GGGBCT--TTCCB-SCCEEETTTT-EEECHHHHHHHHHTCT
T ss_pred CCCccc--cCCCC-CCCeEEecCC-eeEHHhhhHHhcCCCC
Confidence 467898 99986 5999998999 9999999877776554
No 22
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=32.17 E-value=5.3 Score=30.54 Aligned_cols=29 Identities=24% Similarity=0.627 Sum_probs=22.1
Q ss_pred cccCCCCCCCCCCccc--cCCCCCcchhhHHHHH
Q 047722 80 RCTNYNCNTNDTPMWR--RGPLGPKTLCNACGIK 111 (138)
Q Consensus 80 ~C~~~~C~t~~TP~WR--rGp~G~~~LCNACGL~ 111 (138)
.|. .|+..+|-+-+ ++..- -.-|+|||-.
T Consensus 98 lC~--~C~sPdT~L~k~~~~r~~-~l~C~ACGa~ 128 (170)
T 2g2k_A 98 LCP--ECENPETDLHVNPKKQTI-GNSCKACGYR 128 (170)
T ss_dssp SCT--TTSSSCEEEEEETTTTEE-EEEETTTCCC
T ss_pred ECC--CCCCCccEEEEecCCCEE-EEEccccCCc
Confidence 388 99999999998 43333 5779999843
No 23
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=31.20 E-value=22 Score=25.97 Aligned_cols=38 Identities=18% Similarity=0.528 Sum_probs=30.9
Q ss_pred CCCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhc
Q 047722 76 YPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEE 117 (138)
Q Consensus 76 ~~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~ 117 (138)
.+.+.|. +|++. -|.|-.=..| ..+|-.|.--.+..++
T Consensus 23 p~N~~Ca--DCg~~-~P~WaS~n~G-vfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 23 PHNRKCF--DCDQR-GPTYVNMTVG-SFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGGGSCT--TTCSS-CCCEEETTTT-EEECHHHHHHHTTSSS
T ss_pred cCCCcCC--CCCCC-CCCceeeccC-EEEchhccchhccCCC
Confidence 3567899 99986 5999999999 8999999877776553
No 24
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=27.17 E-value=22 Score=28.96 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=11.2
Q ss_pred CCCCccccCCCCCCCC-------CCcccc
Q 047722 75 GYPYKRCTNYNCNTND-------TPMWRR 96 (138)
Q Consensus 75 ~~~~~~C~~~~C~t~~-------TP~WRr 96 (138)
..+..+|. .||.-- .|+||.
T Consensus 39 ~~G~~vC~--~CG~Vl~e~~id~~~EwR~ 65 (345)
T 3k7a_M 39 SEGDVVCA--LCGLVLSDKLVDTRSEWRT 65 (345)
T ss_dssp SSCSCCCS--SSCCCCCCCCCCTTCCCCC
T ss_pred CCCCEecC--CCCeEcccccccCCccccc
Confidence 34456676 666522 367765
No 25
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.86 E-value=7.8 Score=29.23 Aligned_cols=29 Identities=24% Similarity=0.627 Sum_probs=21.8
Q ss_pred cccCCCCCCCCCCccc--cCCCCCcchhhHHHHH
Q 047722 80 RCTNYNCNTNDTPMWR--RGPLGPKTLCNACGIK 111 (138)
Q Consensus 80 ~C~~~~C~t~~TP~WR--rGp~G~~~LCNACGL~ 111 (138)
.|. .|+..+|-+-+ ++..- -.-|+|||-.
T Consensus 105 lC~--~C~sPdT~L~~~~~~r~~-~l~C~ACGa~ 135 (157)
T 2e9h_A 105 LCP--ECENPETDLHVNPKKQTI-GNSCKACGYR 135 (157)
T ss_dssp SCT--TTCCSCCEEEEETTTTEE-EEECSSSCCE
T ss_pred ECC--CCCCCccEEEEecCCCEE-EEEccCCCCC
Confidence 388 99999999987 33322 5779999853
No 26
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=25.85 E-value=47 Score=26.94 Aligned_cols=39 Identities=28% Similarity=0.498 Sum_probs=31.4
Q ss_pred CCCCCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhh
Q 047722 74 HGYPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEE 116 (138)
Q Consensus 74 ~~~~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~ 116 (138)
.....+.|. .|+.. -|.|-.=..| ..+|-.|.--.+..+
T Consensus 41 ~~~~n~~c~--dc~~~-~p~w~s~~~g-~~~c~~c~~~hr~lg 79 (368)
T 3jue_A 41 SVDGNAQCC--DCREP-APEWASINLG-VTLCIQCSGIHRSLG 79 (368)
T ss_dssp TSTTTTBCT--TTCCB-SCCEEETTTT-EEECHHHHHHHHHHC
T ss_pred cCCCcCcCC--CCCCC-CCCeEEecCC-eEEcHhHHHHHhccC
Confidence 345678899 99986 5999999999 999999976666554
No 27
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=21.04 E-value=13 Score=26.03 Aligned_cols=9 Identities=33% Similarity=1.073 Sum_probs=5.9
Q ss_pred chhhHHHHH
Q 047722 103 TLCNACGIK 111 (138)
Q Consensus 103 ~LCNACGL~ 111 (138)
-+||+||..
T Consensus 76 RvCn~CGkP 84 (96)
T 3mhs_E 76 RVCEKCGKP 84 (96)
T ss_dssp EEETTTCCE
T ss_pred hhhhccCCc
Confidence 477777753
No 28
>2l1q_A Liver-expressed antimicrobial peptide 2; polypeptide, disulfides, antimicrobial protein, LEAP-2; NMR {Homo sapiens}
Probab=20.95 E-value=26 Score=20.82 Aligned_cols=6 Identities=67% Similarity=1.642 Sum_probs=5.3
Q ss_pred CCcccc
Q 047722 91 TPMWRR 96 (138)
Q Consensus 91 TP~WRr 96 (138)
||.||-
T Consensus 2 TP~WR~ 7 (40)
T 2l1q_A 2 TPFWRG 7 (40)
T ss_dssp CCTTSS
T ss_pred cchhhh
Confidence 899986
Done!