BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047723
(79 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55554|Y4LN_RHISN Uncharacterized protein y4lN OS=Rhizobium sp. (strain NGR234)
GN=NGR_a02620 PE=4 SV=1
Length = 160
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 26 AKVGIILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFE 66
A V IL LVAV +S FL++ QK+ R E Y R KLFE
Sbjct: 52 ANVAAILTPLVAVLAYSRFLWERRQKRLRLESYLREQKLFE 92
>sp|Q8VIK5|PEAR1_MOUSE Platelet endothelial aggregation receptor 1 OS=Mus musculus
GN=Pear1 PE=1 SV=1
Length = 1034
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 20 SRSNTGAKVGIILLGLVAVGLFSFFL-FKLWQKKKREEQYA 59
+ ++ GA +GI +LG + V L + F+ ++ WQK K E A
Sbjct: 750 THNSLGAVIGIAVLGTLVVALIALFIGYRQWQKGKEHEHLA 790
>sp|Q8K5A9|NRADD_RAT Death domain-containing membrane protein NRADD OS=Rattus
norvegicus GN=Nradd PE=1 SV=2
Length = 228
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 24 TGAKVGII-----LLGLVAVGLFSFFLFKLWQKKKREEQY--ARLLKLFEED 68
GA II LL V +GL ++ FK W+ +K+ +Q AR ++L + D
Sbjct: 47 PGASSNIIPVYCALLATVVLGLLAYVAFKCWRSRKQRQQLAKARTVELGDPD 98
>sp|Q0VQP5|MSBA_ALCBS Lipid A export ATP-binding/permease protein MsbA OS=Alcanivorax
borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
GN=msbA PE=3 SV=1
Length = 582
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 16 AHHTSRSNTGAKVGIILLGLVAVGLFSFFLFKLWQ 50
A + + T A + II GL +GLFSF L++ W+
Sbjct: 132 AQQVTSAGTDAIIVIIREGLTVIGLFSFLLWQNWK 166
>sp|P49573|CTR1_YEAST Copper transport protein CTR1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CTR1 PE=1 SV=1
Length = 406
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 17 HHTSRSNTGAKVGIILLGLVAVGLFSFFLFKLW-------QKKKREEQYARLLKLFEEDD 69
HH +N+G GI LL +VA ++ LF W +K ++ +Y+ L +D+
Sbjct: 143 HHLHANNSGKAFGIFLLFVVAAFVYKLLLFVSWCLEVHWFKKWDKQNKYSTLPSANSKDE 202
>sp|Q5VY43|PEAR1_HUMAN Platelet endothelial aggregation receptor 1 OS=Homo sapiens
GN=PEAR1 PE=1 SV=1
Length = 1037
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 25 GAKVGIILLGLVAVGLFSFFL-FKLWQKKKREEQYA 59
GA +GI +LG + V L + F+ ++ WQK K A
Sbjct: 756 GAVIGIAVLGSLVVALVALFIGYRHWQKGKEHHHLA 791
>sp|Q1R9F8|ARNT_ECOUT Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl
transferase OS=Escherichia coli (strain UTI89 / UPEC)
GN=arnT PE=3 SV=1
Length = 550
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 22 SNTGAKVGIILLGLVAVGLFSFFLFKLWQKKK 53
+N G + G+I L+ L ++F +LW+ K+
Sbjct: 79 NNFGVRAGVIFATLLTAALVTWFTLRLWRNKR 110
>sp|A1ADA9|ARNT_ECOK1 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl
transferase OS=Escherichia coli O1:K1 / APEC GN=arnT
PE=3 SV=1
Length = 550
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 22 SNTGAKVGIILLGLVAVGLFSFFLFKLWQKKK 53
+N G + G+I L+ L ++F +LW+ K+
Sbjct: 79 NNFGVRAGVIFATLLTAALVTWFTLRLWRNKR 110
>sp|B7MG24|ARNT_ECO45 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl
transferase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=arnT PE=3 SV=1
Length = 550
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 22 SNTGAKVGIILLGLVAVGLFSFFLFKLWQKKK 53
+N G + G+I L+ L ++F +LW+ K+
Sbjct: 79 NNFGVRAGVIFATLLTAALVTWFTLRLWRNKR 110
>sp|A3LNK7|PRM1_PICST Plasma membrane fusion protein PRM1 OS=Scheffersomyces stipitis
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
Y-11545) GN=PRM1 PE=3 SV=3
Length = 620
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 10 KGKQSAAHHTSRS-NTGAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQ 57
K Q +H+ S S AK+ II+L + AV + ++ W+K REE+
Sbjct: 259 KSIQELSHNLSTSVEMAAKIVIIILAICAVLVMVPLIYDEWRKWNREER 307
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,500,856
Number of Sequences: 539616
Number of extensions: 919050
Number of successful extensions: 3512
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3490
Number of HSP's gapped (non-prelim): 41
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)