Query 047723
Match_columns 79
No_of_seqs 44 out of 46
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 02:29:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08114 PMP1_2: ATPase proteo 99.2 2.3E-11 5E-16 72.8 4.8 36 23-58 7-42 (43)
2 PF08693 SKG6: Transmembrane a 97.7 7.7E-06 1.7E-10 48.1 0.0 30 24-53 11-40 (40)
3 PF01102 Glycophorin_A: Glycop 96.6 0.0023 4.9E-08 44.6 3.1 47 21-69 60-107 (122)
4 PF04689 S1FA: DNA binding pro 96.5 0.0056 1.2E-07 39.9 4.1 33 19-51 7-40 (69)
5 PF06679 DUF1180: Protein of u 95.9 0.0085 1.8E-07 43.6 3.1 27 30-56 98-124 (163)
6 COG2976 Uncharacterized protei 95.5 0.022 4.9E-07 43.2 4.3 34 32-65 25-64 (207)
7 PF14610 DUF4448: Protein of u 95.3 0.012 2.7E-07 41.6 2.0 31 24-54 156-186 (189)
8 PF02404 SCF: Stem cell factor 94.0 0.016 3.4E-07 45.7 0.0 29 30-59 218-247 (273)
9 COG4736 CcoQ Cbb3-type cytochr 93.9 0.094 2E-06 33.0 3.5 39 37-76 19-57 (60)
10 PF10883 DUF2681: Protein of u 93.8 0.22 4.9E-06 33.2 5.3 14 41-54 18-31 (87)
11 PF06365 CD34_antigen: CD34/Po 93.8 0.093 2E-06 39.4 3.9 37 24-60 99-136 (202)
12 PF00558 Vpu: Vpu protein; In 93.4 0.048 1E-06 36.1 1.6 26 38-63 19-44 (81)
13 PHA03265 envelope glycoprotein 93.1 0.12 2.5E-06 42.7 3.6 38 20-57 343-380 (402)
14 PF12669 P12: Virus attachment 92.7 0.16 3.4E-06 31.1 3.0 12 44-55 16-27 (58)
15 PF15345 TMEM51: Transmembrane 91.9 0.43 9.3E-06 36.9 5.2 36 24-59 56-91 (233)
16 PF04478 Mid2: Mid2 like cell 91.7 0.032 6.8E-07 40.8 -1.1 19 37-55 62-80 (154)
17 PF11669 WBP-1: WW domain-bind 91.5 0.4 8.7E-06 32.0 4.2 24 37-60 31-54 (102)
18 KOG3839 Lectin VIP36, involved 91.5 0.035 7.6E-07 45.0 -1.1 26 27-52 317-345 (351)
19 PF14981 FAM165: FAM165 family 90.8 0.6 1.3E-05 28.9 4.1 24 37-60 18-41 (51)
20 PF05795 Plasmodium_Vir: Plasm 90.2 0.2 4.3E-06 36.3 1.9 36 31-66 287-324 (354)
21 TIGR00739 yajC preprotein tran 89.9 0.54 1.2E-05 30.4 3.6 32 37-70 12-43 (84)
22 PRK00888 ftsB cell division pr 89.9 1.3 2.7E-05 29.6 5.4 15 35-49 6-20 (105)
23 TIGR02797 exbB tonB-system ene 89.4 0.77 1.7E-05 33.4 4.4 44 30-73 17-60 (211)
24 PF14316 DUF4381: Domain of un 89.3 1.1 2.4E-05 30.5 4.9 16 37-52 33-48 (146)
25 PF10883 DUF2681: Protein of u 89.2 1.1 2.4E-05 29.8 4.7 31 32-62 6-36 (87)
26 PRK10414 biopolymer transport 88.8 0.88 1.9E-05 34.4 4.5 45 29-73 26-70 (244)
27 PF12301 CD99L2: CD99 antigen 88.8 0.81 1.8E-05 33.4 4.2 29 24-53 114-142 (169)
28 PTZ00382 Variant-specific surf 88.8 0.13 2.8E-06 34.1 0.0 34 20-53 61-95 (96)
29 PF02009 Rifin_STEVOR: Rifin/s 88.6 0.61 1.3E-05 36.6 3.6 26 37-62 267-297 (299)
30 PF05545 FixQ: Cbb3-type cytoc 88.5 0.67 1.5E-05 26.8 2.9 28 35-62 17-44 (49)
31 PF06864 PAP_PilO: Pilin acces 88.0 0.83 1.8E-05 36.0 4.1 24 35-58 172-195 (414)
32 PF14316 DUF4381: Domain of un 87.9 1.4 3.1E-05 30.0 4.8 36 31-66 24-59 (146)
33 PF05283 MGC-24: Multi-glycosy 87.3 0.9 1.9E-05 33.8 3.7 20 30-50 166-185 (186)
34 PF06024 DUF912: Nucleopolyhed 87.2 0.86 1.9E-05 30.1 3.2 23 24-46 60-82 (101)
35 PRK05585 yajC preprotein trans 86.7 1.4 3E-05 29.7 4.1 32 37-70 27-58 (106)
36 PRK10506 hypothetical protein; 86.6 1.8 3.9E-05 30.1 4.7 42 24-65 9-53 (162)
37 PRK10801 colicin uptake protei 85.7 1.6 3.4E-05 32.5 4.3 39 30-68 18-56 (227)
38 PF06305 DUF1049: Protein of u 85.7 2.8 6.1E-05 24.7 4.6 21 37-57 32-52 (68)
39 PRK05886 yajC preprotein trans 85.6 1.4 3E-05 30.3 3.6 37 32-70 8-44 (109)
40 PRK01844 hypothetical protein; 85.6 0.66 1.4E-05 30.3 2.0 30 24-53 3-32 (72)
41 PF02480 Herpes_gE: Alphaherpe 85.4 0.26 5.5E-06 40.1 0.0 19 37-55 368-386 (439)
42 PF02699 YajC: Preprotein tran 84.4 1.9 4E-05 27.5 3.7 33 36-70 10-42 (82)
43 PF07010 Endomucin: Endomucin; 84.3 1.5 3.3E-05 34.5 3.8 26 27-52 192-217 (259)
44 PF06295 DUF1043: Protein of u 84.3 1.8 3.9E-05 29.5 3.8 23 31-53 2-24 (128)
45 PF01034 Syndecan: Syndecan do 84.0 0.29 6.4E-06 31.3 -0.2 24 25-48 13-36 (64)
46 PF10855 DUF2648: Protein of u 83.5 0.85 1.8E-05 26.1 1.6 18 37-54 9-26 (33)
47 PF12072 DUF3552: Domain of un 83.2 2.8 6.1E-05 30.2 4.6 28 28-55 3-30 (201)
48 KOG3054 Uncharacterized conser 83.1 1.4 3.1E-05 35.2 3.3 25 30-54 4-28 (299)
49 KOG4550 Predicted membrane pro 83.0 1.2 2.6E-05 38.3 2.9 20 34-53 569-588 (606)
50 PLN03150 hypothetical protein; 82.6 1.2 2.7E-05 36.7 2.9 31 24-54 543-573 (623)
51 PF01299 Lamp: Lysosome-associ 82.6 0.43 9.4E-06 36.0 0.2 23 33-55 279-301 (306)
52 KOG3839 Lectin VIP36, involved 82.6 0.12 2.7E-06 41.9 -2.9 32 30-62 317-351 (351)
53 PF05454 DAG1: Dystroglycan (D 82.5 0.4 8.7E-06 37.6 0.0 29 35-63 159-188 (290)
54 PF15102 TMEM154: TMEM154 prot 82.5 0.12 2.7E-06 37.4 -2.6 23 27-49 58-82 (146)
55 PF13908 Shisa: Wnt and FGF in 82.3 0.39 8.4E-06 33.6 -0.2 15 23-37 77-91 (179)
56 COG2165 PulG Type II secretory 82.0 2.7 5.8E-05 26.3 3.6 16 25-40 9-24 (149)
57 PF02009 Rifin_STEVOR: Rifin/s 82.0 1.5 3.2E-05 34.5 2.9 21 27-47 262-282 (299)
58 PRK00523 hypothetical protein; 81.8 1.2 2.7E-05 29.0 2.1 30 24-53 4-33 (72)
59 PF14283 DUF4366: Domain of un 81.7 0.077 1.7E-06 39.8 -4.1 34 21-57 157-190 (218)
60 PF12877 DUF3827: Domain of un 81.5 1.4 3E-05 38.6 2.9 35 21-55 266-300 (684)
61 PF11368 DUF3169: Protein of u 81.3 3.1 6.8E-05 30.5 4.3 10 66-75 82-91 (248)
62 PF00558 Vpu: Vpu protein; In 81.2 2.2 4.7E-05 28.3 3.1 36 31-66 8-44 (81)
63 PF03229 Alpha_GJ: Alphavirus 80.3 9.8 0.00021 27.3 6.4 35 24-58 82-116 (126)
64 PTZ00046 rifin; Provisional 79.9 1.7 3.7E-05 35.3 2.8 19 49-67 340-358 (358)
65 PF02430 AMA-1: Apical membran 79.7 0.58 1.2E-05 39.4 0.0 30 25-54 430-460 (471)
66 TIGR01477 RIFIN variant surfac 79.1 1.9 4.2E-05 35.0 2.8 19 49-67 335-353 (353)
67 PRK08455 fliL flagellar basal 78.8 2 4.4E-05 31.1 2.6 24 25-48 18-41 (182)
68 cd00927 Cyt_c_Oxidase_VIc Cyto 78.8 8.3 0.00018 24.9 5.2 41 33-73 20-60 (70)
69 PF12575 DUF3753: Protein of u 78.6 2.1 4.5E-05 28.0 2.3 23 24-46 46-68 (72)
70 PRK11677 hypothetical protein; 78.6 2.8 6E-05 29.6 3.2 22 29-50 4-25 (134)
71 TIGR03064 sortase_srtB sortase 78.5 4.1 8.8E-05 30.6 4.2 25 44-68 21-45 (232)
72 PF13498 DUF4122: Domain of un 78.5 3.6 7.9E-05 31.8 4.0 20 41-60 13-33 (220)
73 PF09835 DUF2062: Uncharacteri 78.5 4.3 9.4E-05 27.4 4.0 26 35-60 129-154 (154)
74 PF12273 RCR: Chitin synthesis 78.4 3.1 6.8E-05 27.9 3.3 22 33-54 5-26 (130)
75 TIGR03141 cytochro_ccmD heme e 78.3 9.1 0.0002 22.0 4.8 26 37-62 16-41 (45)
76 COG4965 TadB Flp pilus assembl 77.7 5.8 0.00013 31.6 5.0 39 31-69 5-44 (309)
77 PF07047 OPA3: Optic atrophy 3 77.6 8.2 0.00018 26.5 5.2 36 39-74 87-127 (134)
78 PF14163 SieB: Superinfection 77.6 4.2 9E-05 27.7 3.7 28 37-64 47-79 (151)
79 COG4968 PilE Tfp pilus assembl 77.5 6.9 0.00015 28.3 5.0 41 24-64 6-50 (139)
80 COG2165 PulG Type II secretory 77.2 6.5 0.00014 24.5 4.3 14 37-50 27-40 (149)
81 TIGR02796 tolQ TolQ protein. T 77.1 6.4 0.00014 28.8 4.8 36 33-68 20-55 (215)
82 PRK06531 yajC preprotein trans 77.0 4 8.6E-05 28.2 3.5 21 50-70 22-42 (113)
83 PHA02047 phage lambda Rz1-like 76.9 6.6 0.00014 27.3 4.5 19 30-49 6-28 (101)
84 PF11431 Transport_MerF: Membr 76.9 1.7 3.6E-05 26.4 1.4 14 42-55 33-46 (46)
85 PF05961 Chordopox_A13L: Chord 76.1 2.8 6.1E-05 27.3 2.4 23 31-53 5-27 (68)
86 TIGR01477 RIFIN variant surfac 76.0 2.1 4.5E-05 34.8 2.2 37 27-63 316-352 (353)
87 PHA03099 epidermal growth fact 76.0 0.78 1.7E-05 33.3 -0.2 30 28-57 105-134 (139)
88 PF04375 HemX: HemX; InterPro 75.9 21 0.00045 28.1 7.6 29 24-52 28-56 (372)
89 PF03606 DcuC: C4-dicarboxylat 75.8 4.7 0.0001 32.4 4.1 35 37-71 207-244 (465)
90 PTZ00046 rifin; Provisional 75.7 2 4.3E-05 35.0 2.0 37 27-63 321-357 (358)
91 TIGR01710 typeII_sec_gspG gene 75.6 7.5 0.00016 26.2 4.5 14 42-55 22-35 (134)
92 PRK11380 hypothetical protein; 75.4 3.9 8.5E-05 33.4 3.6 27 32-58 77-103 (353)
93 PF02937 COX6C: Cytochrome c o 75.4 10 0.00022 24.3 4.9 37 37-73 26-62 (73)
94 PHA02088 hypothetical protein 75.1 6.5 0.00014 28.0 4.2 32 28-59 4-36 (125)
95 PHA03240 envelope glycoprotein 74.9 2.9 6.3E-05 32.9 2.6 8 46-53 238-245 (258)
96 PRK11273 glpT sn-glycerol-3-ph 74.7 3.3 7.1E-05 31.3 2.8 24 34-57 422-445 (452)
97 PF06143 Baculo_11_kDa: Baculo 74.2 8.9 0.00019 25.6 4.5 14 36-49 47-60 (84)
98 TIGR01708 typeII_sec_gspH gene 74.0 6.2 0.00013 26.1 3.7 21 25-45 5-25 (143)
99 PHA02898 virion envelope prote 73.9 4.9 0.00011 27.5 3.3 26 27-52 46-71 (92)
100 PF06697 DUF1191: Protein of u 72.7 12 0.00026 29.5 5.6 17 44-60 234-251 (278)
101 PF09402 MSC: Man1-Src1p-C-ter 72.6 0.56 1.2E-05 35.2 -1.7 20 38-57 228-247 (334)
102 TIGR02209 ftsL_broad cell divi 72.5 16 0.00035 22.1 5.1 12 44-55 19-30 (85)
103 PF02060 ISK_Channel: Slow vol 71.9 7 0.00015 28.1 3.8 15 49-63 87-101 (129)
104 PHA03049 IMV membrane protein; 71.8 4 8.6E-05 26.6 2.3 23 31-53 5-27 (68)
105 PF11337 DUF3139: Protein of u 70.7 18 0.0004 22.7 5.2 22 41-62 17-44 (85)
106 PF15361 RIC3: Resistance to i 70.4 4.1 8.8E-05 29.0 2.3 25 30-55 84-110 (152)
107 PHA03265 envelope glycoprotein 69.8 9.6 0.00021 31.8 4.6 47 11-57 337-383 (402)
108 PF02687 FtsX: FtsX-like perme 69.4 8.4 0.00018 23.1 3.3 19 37-55 11-29 (121)
109 PF05568 ASFV_J13L: African sw 69.4 9.4 0.0002 28.8 4.2 13 29-41 32-44 (189)
110 KOG1094 Discoidin domain recep 68.8 6.7 0.00015 35.0 3.8 16 37-53 404-419 (807)
111 PF08374 Protocadherin: Protoc 68.6 6.4 0.00014 30.4 3.2 14 37-50 51-64 (221)
112 PRK10920 putative uroporphyrin 68.4 15 0.00032 29.9 5.4 35 21-58 32-66 (390)
113 PRK10574 putative major pilin 68.1 15 0.00032 25.9 4.8 18 37-54 21-38 (146)
114 PHA03048 IMV membrane protein; 68.0 6.8 0.00015 26.8 2.9 26 27-52 45-70 (93)
115 COG1862 YajC Preprotein transl 68.0 7.6 0.00016 26.2 3.1 39 29-69 10-48 (97)
116 TIGR03521 GldG gliding-associa 67.3 7.8 0.00017 31.9 3.7 17 38-54 534-550 (552)
117 TIGR02205 septum_zipA cell div 67.0 2.2 4.8E-05 33.3 0.5 24 30-53 4-27 (284)
118 PF04882 Peroxin-3: Peroxin-3; 67.0 3.8 8.2E-05 33.0 1.8 19 37-55 20-38 (432)
119 PF12216 m04gp34like: Immune e 66.6 12 0.00027 29.1 4.5 24 24-47 233-256 (272)
120 cd01324 cbb3_Oxidase_CcoQ Cyto 66.2 8.4 0.00018 22.8 2.7 24 37-60 20-43 (48)
121 PF06022 Cir_Bir_Yir: Plasmodi 65.9 3.5 7.6E-05 31.8 1.4 29 19-47 252-280 (280)
122 PF06724 DUF1206: Domain of Un 65.8 14 0.0003 22.4 3.8 25 30-54 47-71 (73)
123 PF11780 DUF3318: Protein of u 65.1 6.6 0.00014 27.9 2.6 18 37-54 109-126 (146)
124 PF13400 Tad: Putative Flp pil 65.0 11 0.00024 21.3 3.0 22 37-59 16-37 (48)
125 TIGR01947 rnfG electron transp 64.9 21 0.00045 25.5 5.1 19 50-68 27-45 (186)
126 PF05454 DAG1: Dystroglycan (D 64.6 2.2 4.7E-05 33.6 0.0 32 27-58 148-179 (290)
127 PRK01741 cell division protein 64.5 9.9 0.00021 30.8 3.7 29 30-58 5-33 (332)
128 PF04995 CcmD: Heme exporter p 64.4 25 0.00054 20.1 4.6 22 36-57 14-35 (46)
129 PF05399 EVI2A: Ectropic viral 64.3 12 0.00026 29.1 4.0 11 35-45 137-147 (227)
130 TIGR02596 Verrucomicrobium spi 64.0 14 0.0003 27.5 4.1 29 31-59 9-37 (195)
131 PRK08808 general secretion pat 63.8 16 0.00034 27.2 4.4 39 24-62 7-49 (211)
132 PRK07718 fliL flagellar basal 63.6 3.1 6.8E-05 28.6 0.7 30 28-57 6-35 (142)
133 PF03908 Sec20: Sec20; InterP 63.3 10 0.00022 24.1 2.9 18 34-51 74-91 (92)
134 PF15145 DUF4577: Domain of un 63.2 8 0.00017 27.8 2.6 43 29-73 66-108 (128)
135 PHA02650 hypothetical protein; 63.2 6.3 0.00014 26.4 2.0 25 24-48 48-72 (81)
136 PF15055 DUF4536: Domain of un 62.8 6.6 0.00014 23.7 1.9 18 39-56 12-29 (47)
137 PF03672 UPF0154: Uncharacteri 62.6 16 0.00034 23.3 3.7 21 32-52 4-24 (64)
138 PF06160 EzrA: Septation ring 62.5 21 0.00045 29.6 5.3 11 55-65 28-38 (560)
139 PHA02680 ORF090 IMV phosphoryl 62.2 10 0.00022 25.9 2.9 25 27-51 47-71 (91)
140 PRK10847 hypothetical protein; 62.1 11 0.00024 27.2 3.3 15 43-57 202-216 (219)
141 TIGR01167 LPXTG_anchor LPXTG-m 61.9 6.5 0.00014 20.4 1.6 10 44-53 24-33 (34)
142 PF14584 DUF4446: Protein of u 61.3 35 0.00076 24.2 5.7 19 55-74 29-47 (151)
143 PF07406 NICE-3: NICE-3 protei 60.9 14 0.0003 27.2 3.7 13 24-36 9-21 (186)
144 PF06864 PAP_PilO: Pilin acces 60.5 13 0.00028 29.4 3.6 38 24-61 164-201 (414)
145 PRK05696 fliL flagellar basal 60.4 18 0.00039 25.4 4.1 19 28-46 21-39 (170)
146 PF02439 Adeno_E3_CR2: Adenovi 60.1 10 0.00022 22.2 2.3 17 37-53 17-33 (38)
147 PRK15117 ABC transporter perip 59.9 9.4 0.0002 27.9 2.6 28 39-67 72-99 (211)
148 PF02076 STE3: Pheromone A rec 59.9 18 0.00039 27.7 4.2 18 37-54 163-180 (283)
149 PHA03054 IMV membrane protein; 59.7 9.5 0.00021 25.1 2.3 22 25-46 47-68 (72)
150 PRK04778 septation ring format 59.2 18 0.0004 29.8 4.4 22 45-66 22-43 (569)
151 PF04431 Pec_lyase_N: Pectate 58.8 10 0.00022 23.5 2.3 19 47-66 7-25 (56)
152 PRK05346 Na(+)-translocating N 58.7 23 0.0005 27.1 4.6 42 25-66 11-54 (256)
153 PRK10574 putative major pilin 58.5 31 0.00068 24.2 5.0 41 24-64 5-45 (146)
154 PF11743 DUF3301: Protein of u 58.3 29 0.00062 22.7 4.5 23 37-59 4-26 (97)
155 PF13131 DUF3951: Protein of u 58.0 10 0.00023 23.7 2.2 25 29-53 7-31 (53)
156 COG2857 CYT1 Cytochrome c1 [En 57.6 12 0.00025 28.3 2.9 21 15-35 214-234 (250)
157 PRK04335 cell division protein 57.5 6.9 0.00015 31.2 1.7 36 30-65 6-43 (313)
158 PF01972 SDH_sah: Serine dehyd 57.2 32 0.00069 27.5 5.3 36 32-67 10-45 (285)
159 PF09577 Spore_YpjB: Sporulati 57.0 13 0.00029 28.3 3.1 25 29-53 202-226 (232)
160 PF04639 Baculo_E56: Baculovir 56.8 1.7 3.7E-05 34.9 -1.8 32 21-52 273-304 (305)
161 TIGR03481 HpnM hopanoid biosyn 56.7 12 0.00025 27.1 2.6 28 39-67 68-95 (198)
162 PF04999 FtsL: Cell division p 56.6 47 0.001 20.8 5.5 12 61-72 44-55 (97)
163 PF09835 DUF2062: Uncharacteri 56.5 17 0.00037 24.5 3.3 25 31-55 128-152 (154)
164 PRK03427 cell division protein 56.2 11 0.00025 30.4 2.7 24 30-53 7-30 (333)
165 PF10510 PIG-S: Phosphatidylin 56.2 10 0.00022 30.9 2.5 33 23-55 485-517 (517)
166 PF05767 Pox_A14: Poxvirus vir 56.0 13 0.00028 25.4 2.6 34 28-61 47-84 (92)
167 PF08320 PIG-X: PIG-X / PBN1; 56.0 17 0.00036 26.1 3.3 27 25-51 181-207 (207)
168 KOG2533 Permease of the major 55.9 19 0.00042 29.5 4.1 25 37-61 448-472 (495)
169 PF13584 BatD: Oxygen toleranc 55.8 15 0.00032 28.9 3.3 8 48-55 446-453 (484)
170 COG2959 HemX Uncharacterized e 55.4 33 0.00072 28.6 5.3 23 31-53 36-58 (391)
171 PF10176 DUF2370: Protein of u 55.2 40 0.00087 26.0 5.4 29 27-56 195-223 (233)
172 COG1580 FliL Flagellar basal b 55.0 27 0.00059 25.1 4.3 26 27-52 17-42 (159)
173 PRK12785 fliL flagellar basal 54.9 4.1 8.8E-05 28.8 0.0 26 28-53 26-51 (166)
174 PF06682 DUF1183: Protein of u 54.9 13 0.00028 29.7 2.8 20 33-52 160-179 (318)
175 PF15106 TMEM156: TMEM156 prot 54.9 23 0.0005 27.6 4.1 24 34-57 183-206 (226)
176 PF13491 DUF4117: Domain of un 54.8 18 0.00039 24.2 3.2 26 37-62 69-94 (171)
177 PF13314 DUF4083: Domain of un 54.3 19 0.00042 22.7 3.0 13 56-68 46-58 (58)
178 PF11884 DUF3404: Domain of un 53.8 24 0.00053 27.7 4.1 24 31-54 234-257 (262)
179 PF14575 EphA2_TM: Ephrin type 53.6 2.7 5.8E-05 26.6 -1.0 25 31-55 6-30 (75)
180 KOG3251 Golgi SNAP receptor co 53.5 12 0.00026 28.7 2.3 19 32-50 195-213 (213)
181 PRK06975 bifunctional uroporph 53.4 66 0.0014 27.4 6.9 22 31-52 327-348 (656)
182 PF14155 DUF4307: Domain of un 53.4 15 0.00034 24.5 2.6 18 34-51 11-28 (112)
183 PRK07021 fliL flagellar basal 53.2 30 0.00066 24.1 4.2 11 42-52 32-42 (162)
184 PF15176 LRR19-TM: Leucine-ric 53.0 13 0.00028 25.8 2.3 38 24-61 17-55 (102)
185 PF11014 DUF2852: Protein of u 52.8 12 0.00027 26.2 2.2 27 27-53 11-39 (115)
186 PF13301 DUF4079: Protein of u 52.6 26 0.00056 25.5 3.9 28 32-59 9-36 (175)
187 PRK12705 hypothetical protein; 52.5 21 0.00046 30.0 3.9 15 39-53 19-33 (508)
188 PF11694 DUF3290: Protein of u 52.2 17 0.00038 25.8 2.9 15 39-53 28-42 (149)
189 PF12868 DUF3824: Domain of un 52.2 21 0.00045 25.3 3.3 22 39-60 17-39 (137)
190 PHA02692 hypothetical protein; 52.1 11 0.00024 24.6 1.7 23 24-46 44-66 (70)
191 PHA02844 putative transmembran 51.9 15 0.00034 24.2 2.4 20 27-46 49-68 (75)
192 PRK11049 D-alanine/D-serine/gl 51.9 14 0.00031 28.8 2.6 18 40-57 450-467 (469)
193 PF10587 EF-1_beta_acid: Eukar 51.8 4.5 9.8E-05 22.3 -0.1 11 64-74 1-11 (28)
194 PF03381 CDC50: LEM3 (ligand-e 51.8 8.9 0.00019 29.2 1.4 32 20-51 239-270 (278)
195 PF11346 DUF3149: Protein of u 51.5 11 0.00024 22.2 1.5 17 37-53 22-38 (42)
196 TIGR01707 gspI general secreti 51.5 38 0.00083 22.2 4.3 25 31-55 7-31 (101)
197 PRK00269 zipA cell division pr 51.0 20 0.00044 28.6 3.3 16 41-57 17-32 (293)
198 KOG4764 Uncharacterized conser 51.0 5.5 0.00012 26.1 0.2 12 62-73 10-21 (70)
199 PF06212 GRIM-19: GRIM-19 prot 50.8 43 0.00093 23.5 4.6 13 39-51 40-52 (130)
200 PHA02819 hypothetical protein; 50.8 13 0.00028 24.4 1.9 20 27-46 47-66 (71)
201 PF07811 TadE: TadE-like prote 50.6 39 0.00085 18.1 4.6 29 29-57 8-36 (43)
202 PF00001 7tm_1: 7 transmembran 50.5 57 0.0012 21.0 4.9 25 30-54 157-181 (257)
203 PRK10772 cell division protein 50.5 32 0.00069 23.6 3.9 43 30-76 27-69 (108)
204 PF15330 SIT: SHP2-interacting 50.4 12 0.00026 25.4 1.8 9 47-55 20-28 (107)
205 PTZ00270 variable surface prot 50.0 11 0.00025 29.4 1.8 27 22-48 265-291 (333)
206 PF05422 SIN1: Stress-activate 49.8 5.4 0.00012 33.6 0.0 40 37-76 232-275 (523)
207 PF15330 SIT: SHP2-interacting 49.3 30 0.00065 23.4 3.6 26 33-58 9-34 (107)
208 PF06809 NPDC1: Neural prolife 49.2 3 6.4E-05 34.0 -1.6 29 23-51 195-227 (341)
209 PRK12661 putative monovalent c 48.6 28 0.00061 24.8 3.4 27 27-53 102-128 (140)
210 PF07271 Cytadhesin_P30: Cytad 48.2 18 0.00039 28.9 2.6 19 58-76 99-117 (279)
211 PF11884 DUF3404: Domain of un 48.2 13 0.00028 29.2 1.8 31 24-54 230-260 (262)
212 PRK08126 hypothetical protein; 48.0 34 0.00074 27.9 4.3 40 25-64 242-281 (432)
213 PRK04778 septation ring format 47.8 44 0.00096 27.6 4.9 22 37-58 10-31 (569)
214 PRK10580 proY putative proline 47.6 11 0.00023 29.3 1.3 21 37-57 434-454 (457)
215 KOG1025 Epidermal growth facto 47.4 38 0.00083 31.7 4.8 39 27-65 629-671 (1177)
216 PF06024 DUF912: Nucleopolyhed 47.3 46 0.001 21.9 4.1 26 24-49 57-82 (101)
217 PRK12658 putative monovalent c 47.1 30 0.00064 24.2 3.3 28 27-54 77-104 (125)
218 PF08763 Ca_chan_IQ: Voltage g 47.1 28 0.00061 20.0 2.7 10 42-51 12-21 (35)
219 PF12072 DUF3552: Domain of un 46.2 54 0.0012 23.6 4.7 20 29-48 1-20 (201)
220 PF02158 Neuregulin: Neureguli 46.2 6.7 0.00014 32.7 0.0 30 31-61 15-45 (404)
221 PF11877 DUF3397: Protein of u 46.1 39 0.00085 22.4 3.7 12 54-65 83-94 (116)
222 PF06097 DUF945: Bacterial pro 46.0 45 0.00098 25.4 4.4 41 31-71 6-46 (460)
223 PF11857 DUF3377: Domain of un 45.8 19 0.00042 23.6 2.1 18 24-41 29-46 (74)
224 PF09307 MHC2-interact: CLIP, 45.6 6.9 0.00015 27.3 0.0 34 20-53 25-60 (114)
225 PF14584 DUF4446: Protein of u 45.5 54 0.0012 23.3 4.5 14 61-74 48-61 (151)
226 PF10661 EssA: WXG100 protein 45.4 25 0.00055 24.8 2.8 12 37-48 128-139 (145)
227 cd00925 Cyt_c_Oxidase_VIa Cyto 45.1 26 0.00057 23.2 2.7 20 33-52 23-42 (86)
228 PRK08388 putative monovalent c 45.0 32 0.0007 23.4 3.2 27 28-54 82-108 (119)
229 PF09972 DUF2207: Predicted me 45.0 19 0.00042 27.3 2.3 27 32-58 232-258 (511)
230 PF03896 TRAP_alpha: Transloco 44.3 23 0.00049 27.7 2.6 26 29-54 208-234 (285)
231 PF06570 DUF1129: Protein of u 44.1 33 0.00071 24.5 3.3 16 37-52 185-200 (206)
232 PF07219 HemY_N: HemY protein 44.0 61 0.0013 20.9 4.3 10 51-60 53-62 (108)
233 PRK11387 S-methylmethionine tr 43.9 21 0.00046 27.8 2.5 23 38-60 444-467 (471)
234 COG4726 PilX Tfp pilus assembl 43.6 58 0.0013 24.8 4.7 30 20-49 9-38 (196)
235 TIGR02976 phageshock_pspB phag 43.5 61 0.0013 20.9 4.1 33 39-71 16-54 (75)
236 PF12216 m04gp34like: Immune e 43.3 19 0.00042 28.0 2.1 49 13-61 218-267 (272)
237 PF11772 EpuA: DNA-directed RN 43.2 18 0.00039 21.6 1.6 20 28-47 2-21 (47)
238 PF05494 Tol_Tol_Ttg2: Toluene 43.2 10 0.00023 25.9 0.6 29 38-67 41-69 (170)
239 TIGR00941 2a6301s03 Multicompo 42.9 41 0.00089 22.8 3.4 27 27-53 73-99 (104)
240 PRK06568 F0F1 ATP synthase sub 42.8 35 0.00075 24.4 3.2 15 36-50 12-27 (154)
241 PHA02975 hypothetical protein; 42.8 23 0.0005 23.1 2.1 20 27-46 45-64 (69)
242 TIGR03593 yidC_nterm membrane 42.4 26 0.00057 26.7 2.7 18 37-54 9-26 (366)
243 COG2841 Uncharacterized protei 42.1 15 0.00031 24.2 1.1 18 57-74 15-32 (72)
244 PF04917 Shufflon_N: Bacterial 42.0 57 0.0012 26.2 4.6 26 42-67 27-52 (356)
245 PRK07033 hypothetical protein; 42.0 45 0.00097 27.1 4.1 39 26-64 228-266 (427)
246 PF10669 Phage_Gp23: Protein g 41.7 24 0.00053 25.0 2.3 26 28-53 17-42 (121)
247 PF01102 Glycophorin_A: Glycop 41.6 12 0.00026 26.1 0.7 32 22-53 65-96 (122)
248 PRK07946 putative monovalent c 41.4 41 0.00088 24.7 3.4 27 27-53 77-103 (163)
249 PF10661 EssA: WXG100 protein 41.1 16 0.00035 25.8 1.3 21 30-50 125-145 (145)
250 PF06281 DUF1035: Protein of u 41.1 7.1 0.00015 25.7 -0.5 35 16-50 36-71 (73)
251 PF02656 DUF202: Domain of unk 41.0 40 0.00086 20.1 2.9 14 39-52 58-71 (73)
252 PTZ00045 apical membrane antig 41.0 23 0.00051 30.9 2.4 23 41-63 531-553 (595)
253 COG4649 Uncharacterized protei 40.5 5.7 0.00012 30.8 -1.1 38 30-67 31-71 (221)
254 TIGR02889 spore_YpeB germinati 40.4 88 0.0019 25.8 5.6 41 36-76 10-56 (435)
255 PF09682 Holin_LLH: Phage holi 40.0 1E+02 0.0023 20.2 5.0 19 46-64 28-47 (108)
256 PF06809 NPDC1: Neural prolife 39.9 22 0.00047 29.2 2.0 28 29-56 198-228 (341)
257 PF13703 PepSY_TM_2: PepSY-ass 39.8 38 0.00081 21.1 2.7 20 32-51 22-41 (88)
258 COG4477 EzrA Negative regulato 39.8 52 0.0011 28.7 4.3 27 37-66 9-35 (570)
259 PF12158 DUF3592: Protein of u 39.8 1E+02 0.0022 19.7 4.8 13 39-51 17-29 (148)
260 TIGR01710 typeII_sec_gspG gene 39.6 59 0.0013 21.8 3.8 10 37-46 20-29 (134)
261 PRK05886 yajC preprotein trans 39.4 64 0.0014 22.1 4.0 22 43-64 14-35 (109)
262 PF14257 DUF4349: Domain of un 39.4 8.3 0.00018 28.2 -0.4 12 37-48 249-260 (262)
263 PRK08600 putative monovalent c 39.2 50 0.0011 22.7 3.4 28 27-54 73-100 (113)
264 PRK09094 putative monovalent c 39.2 50 0.0011 22.8 3.4 27 27-53 77-103 (114)
265 PF01299 Lamp: Lysosome-associ 39.0 7.1 0.00015 29.5 -0.8 23 26-48 275-297 (306)
266 COG1704 LemA Uncharacterized c 39.0 51 0.0011 24.8 3.7 30 29-58 5-34 (185)
267 PF14012 DUF4229: Protein of u 38.8 82 0.0018 19.6 4.1 28 33-60 38-65 (69)
268 TIGR01938 nqrC NADH:ubiquinone 38.7 58 0.0013 25.1 4.1 41 26-66 8-50 (251)
269 PRK01908 electron transport co 38.7 55 0.0012 24.0 3.8 18 51-68 32-49 (205)
270 PF11084 DUF2621: Protein of u 38.5 48 0.001 24.2 3.4 16 37-52 20-35 (141)
271 PF14163 SieB: Superinfection 38.4 1.3E+02 0.0027 20.4 5.8 42 32-73 39-84 (151)
272 TIGR03503 conserved hypothetic 38.3 2.5 5.4E-05 34.4 -3.5 24 30-53 350-373 (374)
273 PF05337 CSF-1: Macrophage col 38.2 11 0.00023 30.2 0.0 30 27-58 231-260 (285)
274 KOG3300 NADH:ubiquinone oxidor 38.1 84 0.0018 23.1 4.6 16 60-75 85-100 (146)
275 PF09529 Intg_mem_TP0381: Inte 38.0 84 0.0018 22.3 4.6 10 41-50 21-30 (225)
276 PF08695 Coa1: Cytochrome oxid 37.9 19 0.00042 23.2 1.2 37 40-76 10-46 (116)
277 PF07695 7TMR-DISM_7TM: 7TM di 37.4 43 0.00094 21.9 2.8 21 37-57 133-153 (205)
278 COG1298 FlhA Flagellar biosynt 37.4 32 0.0007 30.5 2.8 13 39-51 314-326 (696)
279 COG5353 Uncharacterized protei 37.1 50 0.0011 24.6 3.4 26 27-53 7-32 (161)
280 PF10969 DUF2771: Protein of u 37.1 51 0.0011 23.5 3.3 18 35-52 10-27 (161)
281 KOG1834 Calsyntenin [Extracell 37.1 22 0.00047 32.3 1.7 41 8-48 811-851 (952)
282 PF04011 LemA: LemA family; I 37.0 28 0.00061 24.4 2.0 22 37-58 13-34 (186)
283 PF14828 Amnionless: Amnionles 37.0 43 0.00094 27.4 3.3 22 20-41 333-354 (437)
284 PF15183 MRAP: Melanocortin-2 37.0 44 0.00096 22.8 2.8 25 24-48 35-59 (90)
285 PRK07021 fliL flagellar basal 36.8 40 0.00088 23.4 2.8 14 38-51 32-45 (162)
286 PRK07375 putative monovalent c 36.6 52 0.0011 22.0 3.2 24 30-53 78-101 (112)
287 PRK11829 biofilm formation reg 36.5 81 0.0018 25.3 4.7 23 32-54 7-29 (660)
288 COG5232 SEC62 Preprotein trans 36.4 36 0.00078 26.9 2.7 29 27-55 149-177 (259)
289 COG3768 Predicted membrane pro 36.4 99 0.0021 25.6 5.2 26 44-69 119-144 (350)
290 PRK10592 putrescine transporte 36.4 45 0.00098 24.6 3.1 10 51-60 270-279 (281)
291 PRK10506 hypothetical protein; 36.2 1.5E+02 0.0031 20.5 5.6 21 27-47 18-38 (162)
292 PF14719 PID_2: Phosphotyrosin 36.2 35 0.00076 25.2 2.5 19 43-61 120-138 (182)
293 PF07694 5TM-5TMR_LYT: 5TMR of 36.2 77 0.0017 21.0 3.9 27 37-63 91-119 (169)
294 PF07297 DPM2: Dolichol phosph 36.1 38 0.00082 22.2 2.4 25 31-55 53-77 (78)
295 PRK09173 F0F1 ATP synthase sub 36.0 1.1E+02 0.0024 20.8 4.7 15 35-49 8-23 (159)
296 PF12923 RRP7: Ribosomal RNA-p 35.9 42 0.00091 22.9 2.7 25 45-69 92-116 (131)
297 TIGR03142 cytochro_ccmI cytoch 35.6 54 0.0012 21.7 3.1 19 30-48 95-113 (117)
298 PRK01637 hypothetical protein; 35.4 30 0.00065 25.8 2.0 31 37-71 254-284 (286)
299 PF11743 DUF3301: Protein of u 35.1 1.1E+02 0.0024 19.9 4.5 29 33-61 3-31 (97)
300 PRK10920 putative uroporphyrin 35.1 2.2E+02 0.0048 23.2 7.0 18 19-36 34-51 (390)
301 PF11446 DUF2897: Protein of u 35.0 48 0.001 20.2 2.6 18 34-51 11-28 (55)
302 PF04971 Lysis_S: Lysis protei 34.9 48 0.001 21.4 2.7 20 37-56 45-64 (68)
303 KOG3637 Vitronectin receptor, 34.8 32 0.0007 31.2 2.4 24 27-50 978-1001(1030)
304 TIGR01432 QOXA cytochrome aa3 34.7 43 0.00093 24.4 2.7 18 35-52 35-52 (217)
305 PRK01741 cell division protein 34.7 43 0.00093 27.2 2.9 28 27-54 5-32 (332)
306 PF11044 TMEMspv1-c74-12: Plec 34.4 93 0.002 19.1 3.7 21 31-51 8-28 (49)
307 TIGR01478 STEVOR variant surfa 33.9 59 0.0013 26.2 3.5 18 30-47 263-280 (295)
308 PRK10270 putative aminodeoxych 33.8 40 0.00086 26.6 2.6 19 31-49 9-27 (340)
309 PRK10747 putative protoheme IX 33.7 87 0.0019 24.1 4.3 6 48-53 74-79 (398)
310 TIGR02203 MsbA_lipidA lipid A 33.4 79 0.0017 25.0 4.2 9 45-53 173-181 (571)
311 PF11770 GAPT: GRB2-binding ad 33.4 5.3 0.00011 29.6 -2.2 11 43-53 41-51 (158)
312 PF06667 PspB: Phage shock pro 33.1 90 0.0019 20.2 3.7 18 56-73 39-56 (75)
313 PF10746 Phage_holin_6: Phage 33.0 36 0.00078 22.0 1.8 10 46-55 57-66 (66)
314 PRK15397 nicotinamide riboside 32.9 79 0.0017 23.8 3.9 20 36-55 212-231 (239)
315 PF01956 DUF106: Integral memb 32.8 73 0.0016 21.9 3.5 13 36-48 24-36 (168)
316 PF12725 DUF3810: Protein of u 32.8 1.2E+02 0.0025 23.7 5.0 11 43-53 39-49 (318)
317 PF00122 E1-E2_ATPase: E1-E2 A 32.8 1E+02 0.0022 21.2 4.2 23 45-67 11-33 (230)
318 KOG2792 Putative cytochrome C 32.6 1.5E+02 0.0032 23.8 5.5 17 44-60 89-106 (280)
319 KOG3653 Transforming growth fa 32.5 93 0.002 27.0 4.7 11 37-47 169-179 (534)
320 PF12259 DUF3609: Protein of u 32.5 36 0.00078 27.3 2.1 17 37-54 311-327 (361)
321 PTZ00370 STEVOR; Provisional 32.3 65 0.0014 26.0 3.5 25 30-54 259-284 (296)
322 PF04977 DivIC: Septum formati 32.2 92 0.002 18.2 3.4 16 59-74 31-46 (80)
323 PF07095 IgaA: Intracellular g 32.1 28 0.0006 31.0 1.6 26 27-52 4-29 (705)
324 PRK10249 phenylalanine transpo 31.9 36 0.00079 26.6 2.1 15 38-52 444-458 (458)
325 PF04391 DUF533: Protein of un 31.9 61 0.0013 23.8 3.1 17 37-53 37-53 (188)
326 COG1862 YajC Preprotein transl 31.8 87 0.0019 21.1 3.6 20 30-49 8-27 (97)
327 PRK05759 F0F1 ATP synthase sub 31.8 1.5E+02 0.0032 19.8 4.8 17 33-49 9-25 (156)
328 PHA02902 putative IMV membrane 31.8 76 0.0016 20.8 3.2 16 37-52 12-27 (70)
329 PF01002 Flavi_NS2B: Flaviviru 31.6 16 0.00034 25.7 0.0 18 37-54 110-127 (128)
330 PRK13415 flagella biosynthesis 31.6 60 0.0013 24.9 3.1 22 32-53 72-93 (219)
331 COG4970 FimT Tfp pilus assembl 31.4 74 0.0016 23.6 3.5 36 24-59 8-46 (181)
332 TIGR03348 VI_IcmF type VI secr 31.2 97 0.0021 28.1 4.8 22 41-62 46-67 (1169)
333 TIGR02854 spore_II_GA sigma-E 31.2 68 0.0015 24.5 3.4 28 30-57 129-156 (288)
334 PF03419 Peptidase_U4: Sporula 31.2 35 0.00076 25.6 1.8 12 43-54 141-152 (293)
335 PF03073 TspO_MBR: TspO/MBR fa 30.9 59 0.0013 22.0 2.7 29 37-65 48-76 (148)
336 COG4741 Predicted secreted end 30.9 1.6E+02 0.0035 22.2 5.2 22 29-50 4-25 (175)
337 PF14276 DUF4363: Domain of un 30.8 60 0.0013 21.1 2.7 18 33-50 5-22 (121)
338 PTZ00087 thrombosponding-relat 30.8 63 0.0014 26.5 3.3 33 24-57 295-327 (340)
339 TIGR01708 typeII_sec_gspH gene 30.8 1.6E+02 0.0034 19.3 4.8 36 28-63 11-47 (143)
340 TIGR00383 corA magnesium Mg(2+ 30.7 64 0.0014 23.7 3.1 12 42-53 305-316 (318)
341 PF01618 MotA_ExbB: MotA/TolQ/ 30.7 83 0.0018 21.0 3.4 31 25-55 98-129 (139)
342 PF05393 Hum_adeno_E3A: Human 30.6 58 0.0013 22.4 2.6 10 46-55 52-61 (94)
343 PF10717 ODV-E18: Occlusion-de 30.1 52 0.0011 22.2 2.3 16 27-42 26-41 (85)
344 PF04892 VanZ: VanZ like famil 30.1 54 0.0012 20.9 2.3 13 41-53 118-130 (133)
345 PRK12660 putative monovalent c 30.1 77 0.0017 21.4 3.2 24 30-53 77-100 (114)
346 COG3115 ZipA Cell division pro 29.9 47 0.001 27.1 2.4 36 31-66 7-42 (324)
347 PRK13455 F0F1 ATP synthase sub 29.9 1.7E+02 0.0036 20.5 5.0 33 37-69 35-71 (184)
348 PRK14758 hypothetical protein; 29.6 70 0.0015 17.6 2.3 14 30-43 9-22 (27)
349 PRK11889 flhF flagellar biosyn 29.6 36 0.00078 28.6 1.8 22 42-68 115-136 (436)
350 PF15392 Joubert: Joubert synd 29.3 59 0.0013 26.6 2.9 23 46-68 59-81 (329)
351 PF13623 SurA_N_2: SurA N-term 29.1 57 0.0012 22.8 2.5 10 36-45 15-24 (145)
352 PHA03399 pif3 per os infectivi 29.0 1.2E+02 0.0026 22.9 4.4 26 34-59 8-33 (200)
353 PF15099 PIRT: Phosphoinositid 28.9 66 0.0014 23.2 2.8 18 41-58 97-114 (129)
354 TIGR02805 exbB2 tonB-system en 28.8 76 0.0016 22.7 3.1 33 24-56 97-130 (138)
355 KOG4056 Translocase of outer m 28.5 54 0.0012 23.9 2.3 20 35-54 14-33 (143)
356 PLN03098 LPA1 LOW PSII ACCUMUL 28.5 74 0.0016 26.8 3.4 17 47-63 256-272 (453)
357 PRK00404 tatB sec-independent 28.4 80 0.0017 22.8 3.2 10 68-77 47-56 (141)
358 PRK10019 nickel/cobalt efflux 28.3 75 0.0016 24.8 3.2 17 38-54 96-112 (279)
359 PRK11360 sensory histidine kin 28.3 84 0.0018 23.5 3.4 26 28-53 10-35 (607)
360 PRK01908 electron transport co 28.3 1.7E+02 0.0036 21.5 4.9 31 30-60 6-36 (205)
361 TIGR02808 short_TIGR02808 cons 28.2 70 0.0015 19.1 2.4 19 29-47 19-37 (42)
362 PRK05415 hypothetical protein; 28.2 1.4E+02 0.0031 24.1 4.9 23 47-69 124-146 (341)
363 KOG4628 Predicted E3 ubiquitin 28.2 1.3E+02 0.0028 24.5 4.6 23 30-52 174-196 (348)
364 PF08375 Rpn3_C: Proteasome re 28.1 52 0.0011 20.9 1.9 19 51-69 47-65 (68)
365 PF05393 Hum_adeno_E3A: Human 28.1 1.2E+02 0.0025 20.9 3.8 34 21-54 30-63 (94)
366 COG3088 CcmH Uncharacterized p 28.1 86 0.0019 23.1 3.3 31 37-67 115-152 (153)
367 PF12279 DUF3619: Protein of u 28.1 1.6E+02 0.0035 20.5 4.6 27 30-58 76-102 (131)
368 KOG2654 Uncharacterized conser 28.0 89 0.0019 26.7 3.8 33 43-75 333-377 (461)
369 PRK09874 drug efflux system pr 27.9 51 0.0011 23.7 2.1 16 39-54 387-402 (408)
370 PRK09731 putative general secr 27.8 1.7E+02 0.0036 21.6 4.8 17 34-50 42-58 (178)
371 PF15050 SCIMP: SCIMP protein 27.7 70 0.0015 23.2 2.7 7 40-46 22-28 (133)
372 PTZ00444 hypothetical protein; 27.6 1.8E+02 0.0039 22.1 5.0 16 48-63 25-40 (184)
373 PLN03155 cytochrome c oxidase 27.5 1.7E+02 0.0037 18.8 4.3 14 44-57 32-47 (63)
374 KOG0809 SNARE protein TLG2/Syn 27.4 53 0.0012 26.6 2.3 31 12-45 270-300 (305)
375 COG0586 DedA Uncharacterized m 27.0 92 0.002 22.4 3.3 17 37-53 189-205 (208)
376 PHA02681 ORF089 virion membran 27.0 98 0.0021 21.2 3.2 18 35-52 10-27 (92)
377 KOG4636 Uncharacterized conser 26.9 29 0.00063 29.5 0.8 30 44-73 437-466 (483)
378 TIGR00247 conserved hypothetic 26.7 56 0.0012 25.4 2.3 7 41-47 19-25 (342)
379 PF12794 MscS_TM: Mechanosensi 26.7 67 0.0015 25.0 2.7 34 31-64 160-199 (340)
380 COG1585 Membrane protein impli 26.7 1.1E+02 0.0025 21.2 3.6 17 36-52 55-71 (140)
381 PF09574 DUF2374: Protein of 26.6 81 0.0018 18.9 2.5 19 29-47 19-37 (42)
382 PF12127 YdfA_immunity: SigmaW 26.6 73 0.0016 26.0 3.0 23 29-51 5-27 (316)
383 PF01545 Cation_efflux: Cation 26.6 1.7E+02 0.0038 20.8 4.6 23 31-53 109-131 (284)
384 PRK11357 frlA putative fructos 26.5 56 0.0012 25.1 2.2 16 41-56 426-441 (445)
385 KOG3637 Vitronectin receptor, 26.5 84 0.0018 28.7 3.6 27 22-48 976-1002(1030)
386 PRK01770 sec-independent trans 26.4 1.2E+02 0.0027 22.3 3.9 8 69-76 48-55 (171)
387 PRK11086 sensory histidine kin 26.2 1.3E+02 0.0029 22.7 4.2 15 38-52 30-44 (542)
388 PRK12704 phosphodiesterase; Pr 26.2 1.3E+02 0.0029 25.0 4.5 13 36-48 12-24 (520)
389 PHA02831 EEV host range protei 26.1 1.3E+02 0.0028 23.4 4.1 15 22-36 226-240 (268)
390 PF12729 4HB_MCP_1: Four helix 26.0 1.7E+02 0.0037 18.1 5.0 13 37-49 19-31 (181)
391 PHA02849 putative transmembran 26.0 59 0.0013 21.9 2.0 18 24-41 14-31 (82)
392 PRK09575 vmrA multidrug efflux 25.9 70 0.0015 24.7 2.7 13 39-51 427-439 (453)
393 cd06140 DNA_polA_I_Bacillus_li 25.8 1.2E+02 0.0026 20.0 3.5 26 42-67 142-167 (178)
394 PF12537 DUF3735: Protein of u 25.8 53 0.0011 20.3 1.7 13 25-37 17-29 (72)
395 PRK00269 zipA cell division pr 25.7 61 0.0013 26.0 2.3 40 25-65 4-43 (293)
396 PRK10836 lysine transporter; P 25.7 50 0.0011 26.0 1.8 16 38-53 459-474 (489)
397 KOG1052 Glutamate-gated kainat 25.6 1.1E+02 0.0024 25.0 3.9 28 28-55 596-623 (656)
398 PRK09458 pspB phage shock prot 25.5 1.3E+02 0.0027 19.8 3.4 19 55-73 38-56 (75)
399 PRK08389 putative monovalent c 25.4 1.1E+02 0.0024 20.5 3.3 25 29-53 78-102 (114)
400 TIGR01386 cztS_silS_copS heavy 25.4 1.2E+02 0.0027 22.1 3.8 7 41-47 23-29 (457)
401 PF03302 VSP: Giardia variant- 25.4 43 0.00094 26.7 1.5 31 22-52 364-395 (397)
402 TIGR00910 2A0307_GadC glutamat 25.4 44 0.00096 26.8 1.5 21 34-54 445-465 (507)
403 PF15099 PIRT: Phosphoinositid 25.3 60 0.0013 23.3 2.1 38 28-65 85-125 (129)
404 smart00780 PIG-X PIG-X / PBN1. 25.3 50 0.0011 24.2 1.7 24 27-50 179-202 (203)
405 COG3167 PilO Tfp pilus assembl 25.1 86 0.0019 24.3 3.0 14 26-39 23-36 (211)
406 PF02932 Neur_chan_memb: Neuro 25.1 58 0.0013 20.2 1.8 15 37-51 71-85 (237)
407 TIGR01620 hyp_HI0043 conserved 25.1 1.8E+02 0.004 23.0 4.9 25 46-70 71-95 (289)
408 PF03839 Sec62: Translocation 25.1 60 0.0013 24.7 2.1 22 31-52 113-134 (224)
409 COG2869 NqrC Na+-transporting 25.1 95 0.0021 24.8 3.3 36 25-60 12-49 (264)
410 KOG3457 Sec61 protein transloc 25.0 72 0.0016 21.7 2.3 18 34-51 65-82 (88)
411 PF10389 CoatB: Bacteriophage 24.9 1.3E+02 0.0027 18.1 3.1 15 37-51 30-44 (46)
412 PF13904 DUF4207: Domain of un 24.9 97 0.0021 23.4 3.2 20 44-63 184-203 (264)
413 PF05160 DSS1_SEM1: DSS1/SEM1 24.9 20 0.00043 22.7 -0.4 13 61-73 7-19 (63)
414 PF10688 Imp-YgjV: Bacterial i 24.8 69 0.0015 22.6 2.3 18 37-54 146-163 (163)
415 PF05434 Tmemb_9: TMEM9; Inte 24.8 47 0.001 24.2 1.5 9 20-28 48-56 (149)
416 PF14341 PilX_N: PilX N-termin 24.8 73 0.0016 18.5 2.0 18 26-43 3-20 (51)
417 PF00430 ATP-synt_B: ATP synth 24.8 1.2E+02 0.0025 19.3 3.2 13 37-49 8-20 (132)
418 PRK14693 hypothetical protein; 24.7 1.6E+02 0.0034 25.6 4.7 33 32-64 299-331 (552)
419 PF15117 UPF0697: Uncharacteri 24.6 35 0.00075 23.6 0.7 26 21-54 15-40 (99)
420 PRK11404 putative PTS system 24.5 87 0.0019 26.0 3.1 8 44-51 460-467 (482)
421 PF02157 Man-6-P_recep: Mannos 24.4 25 0.00054 27.9 0.0 35 24-58 189-223 (278)
422 COG3182 PiuB Uncharacterized i 24.4 68 0.0015 26.5 2.5 23 31-53 363-385 (442)
423 PF07637 PSD5: Protein of unkn 24.4 62 0.0014 19.4 1.8 28 40-67 6-33 (64)
424 PF07423 DUF1510: Protein of u 24.4 24 0.00052 26.7 -0.1 11 37-47 26-36 (217)
425 PRK06287 cobalt transport prot 24.4 63 0.0014 21.7 1.9 17 37-53 89-105 (107)
426 PRK11556 multidrug efflux syst 24.3 67 0.0015 25.3 2.3 23 30-52 10-32 (415)
427 COG4714 Uncharacterized membra 24.2 66 0.0014 25.9 2.3 18 37-54 285-302 (303)
428 PLN03150 hypothetical protein; 24.2 54 0.0012 27.3 1.9 37 20-57 543-579 (623)
429 PRK13685 hypothetical protein; 24.1 79 0.0017 23.9 2.6 18 44-61 22-39 (326)
430 PRK10381 LPS O-antigen length 24.1 82 0.0018 25.1 2.8 26 29-54 341-367 (377)
431 PRK12659 putative monovalent c 24.0 96 0.0021 21.1 2.8 23 30-52 80-102 (117)
432 TIGR02596 Verrucomicrobium spi 23.9 2.4E+02 0.0051 21.0 5.1 32 31-62 6-37 (195)
433 PRK10927 essential cell divisi 23.9 80 0.0017 25.6 2.7 11 37-47 43-53 (319)
434 smart00019 SF_P Pulmonary surf 23.9 94 0.002 23.5 3.0 6 37-42 48-53 (191)
435 PF10675 DUF2489: Protein of u 23.8 1.8E+02 0.0039 20.1 4.2 25 42-66 9-39 (131)
436 TIGR01528 NMN_trans_PnuC nicot 23.8 75 0.0016 22.7 2.3 18 37-54 171-188 (189)
437 PF04917 Shufflon_N: Bacterial 23.8 1.4E+02 0.003 24.0 4.1 32 24-55 6-37 (356)
438 PRK11195 lysophospholipid tran 23.8 95 0.0021 23.2 3.0 22 37-58 367-388 (393)
439 PF02180 BH4: Bcl-2 homology r 23.7 72 0.0016 17.3 1.7 13 40-52 9-21 (27)
440 COG1288 Predicted membrane pro 23.5 1.4E+02 0.003 25.7 4.2 12 42-53 229-240 (481)
441 TIGR00771 DcuC c4-dicarboxylat 23.4 88 0.0019 24.8 2.8 23 31-53 143-165 (388)
442 PHA00739 V3 structural protein 23.3 19 0.00041 24.6 -0.7 15 36-50 76-90 (92)
443 COG5294 Uncharacterized protei 23.3 22 0.00048 25.0 -0.4 18 29-46 5-22 (113)
444 PRK13561 putative diguanylate 23.3 1.9E+02 0.0041 23.4 4.7 22 37-58 12-34 (651)
445 KOG0816 Protein involved in mR 23.3 50 0.0011 25.7 1.4 11 56-66 184-194 (223)
446 PRK14472 F0F1 ATP synthase sub 23.2 1.6E+02 0.0034 20.4 3.8 10 39-48 33-42 (175)
447 MTH00047 COX2 cytochrome c oxi 23.1 63 0.0014 23.7 1.9 15 38-52 23-37 (194)
448 TIGR01711 gspJ general secreti 23.1 1.9E+02 0.0041 20.6 4.3 15 32-46 9-23 (192)
449 PF11120 DUF2636: Protein of u 23.1 2.1E+02 0.0045 18.1 4.6 18 45-62 23-40 (62)
450 PF03918 CcmH: Cytochrome C bi 23.0 28 0.0006 24.6 0.0 26 31-57 106-131 (148)
451 PRK10801 colicin uptake protei 23.0 1E+02 0.0022 23.0 2.9 33 25-57 167-200 (227)
452 PRK10364 sensor protein ZraS; 22.9 1.6E+02 0.0034 22.4 4.0 12 40-51 208-219 (457)
453 PF01372 Melittin: Melittin; 22.9 54 0.0012 17.9 1.1 10 47-56 17-26 (26)
454 PF14851 FAM176: FAM176 family 22.8 16 0.00035 26.4 -1.2 29 26-54 22-52 (153)
455 PF09716 ETRAMP: Malarial earl 22.8 1E+02 0.0022 19.8 2.6 17 37-53 66-82 (84)
456 PF13994 PgaD: PgaD-like prote 22.7 89 0.0019 21.3 2.5 22 37-58 75-96 (138)
457 PF05307 Bundlin: Bundlin; In 22.7 15 0.00032 25.2 -1.4 31 24-54 14-45 (97)
458 PF14937 DUF4500: Domain of un 22.6 1.5E+02 0.0033 20.0 3.5 27 32-58 39-65 (86)
459 COG1289 Predicted membrane pro 22.6 1.3E+02 0.0028 25.2 3.8 34 34-67 487-520 (674)
460 PTZ00100 DnaJ chaperone protei 22.6 1.5E+02 0.0033 20.4 3.6 22 33-54 8-29 (116)
461 PLN00028 nitrate transmembrane 22.6 27 0.00059 27.0 -0.1 31 44-77 432-467 (476)
462 PF14256 YwiC: YwiC-like prote 22.5 1.3E+02 0.0028 20.6 3.2 19 37-55 90-108 (129)
463 PF14760 Rnk_N: Rnk N-terminus 22.4 70 0.0015 18.1 1.6 22 55-76 8-37 (42)
464 PRK09793 methyl-accepting prot 22.4 75 0.0016 25.5 2.3 28 27-54 12-39 (533)
465 PF09548 Spore_III_AB: Stage I 22.4 1.8E+02 0.004 20.2 4.0 34 32-65 6-40 (170)
466 PRK13855 type IV secretion sys 22.4 61 0.0013 26.8 1.8 20 35-54 37-56 (376)
467 PLN02938 phosphatidylserine de 22.4 1.2E+02 0.0027 25.2 3.6 31 29-59 42-75 (428)
468 PF14914 LRRC37AB_C: LRRC37A/B 22.3 44 0.00095 24.7 0.9 29 21-49 116-144 (154)
469 TIGR01709 typeII_sec_gspL gene 22.3 2.1E+02 0.0044 22.1 4.6 8 60-67 274-281 (384)
470 TIGR02759 TraD_Ftype type IV c 22.3 1.6E+02 0.0036 24.7 4.3 27 34-60 110-136 (566)
471 PF10828 DUF2570: Protein of u 22.3 2.4E+02 0.0052 18.5 5.4 13 37-49 13-25 (110)
472 PRK14473 F0F1 ATP synthase sub 22.3 1.7E+02 0.0038 19.9 3.8 14 36-49 20-33 (164)
473 COG2869 NqrC Na+-transporting 22.3 98 0.0021 24.7 2.9 39 23-61 6-44 (264)
474 PRK10414 biopolymer transport 22.2 1E+02 0.0022 23.3 2.9 31 26-56 174-205 (244)
475 TIGR00802 nico high-affinity n 22.2 1.9E+02 0.004 23.2 4.4 14 42-55 95-108 (280)
476 PRK15348 type III secretion sy 22.2 1.1E+02 0.0025 23.5 3.2 17 38-54 233-249 (249)
477 TIGR02755 TraX_Ftype type-F co 22.2 1.2E+02 0.0026 23.1 3.3 23 38-60 136-158 (224)
478 PRK10332 hypothetical protein; 22.2 2.7E+02 0.0059 19.1 4.9 27 22-48 7-33 (107)
479 PRK13837 two-component VirA-li 22.1 1.8E+02 0.0039 24.6 4.5 37 24-60 238-274 (828)
480 PF06120 Phage_HK97_TLTM: Tail 22.1 1.9E+02 0.0042 22.9 4.5 29 32-60 18-51 (301)
481 PF07790 DUF1628: Protein of u 22.0 42 0.00091 20.4 0.7 21 25-45 8-28 (80)
482 PF10754 DUF2569: Protein of u 22.0 1.3E+02 0.0027 20.7 3.1 24 31-54 60-83 (149)
483 PF07589 VPEP: PEP-CTERM motif 22.0 1.1E+02 0.0023 15.8 2.1 18 33-53 8-25 (25)
484 PF07253 Gypsy: Gypsy protein; 21.9 1.4E+02 0.003 25.3 3.9 42 29-70 420-461 (472)
485 PF14142 YrzO: YrzO-like prote 21.9 2E+02 0.0043 17.4 4.6 36 32-67 5-40 (46)
486 TIGR03785 marine_sort_HK prote 21.9 1.9E+02 0.0041 24.4 4.7 49 28-76 408-465 (703)
487 PF06103 DUF948: Bacterial pro 21.9 2.1E+02 0.0045 17.7 4.9 41 28-68 1-41 (90)
488 PF09777 OSTMP1: Osteopetrosis 21.8 26 0.00056 26.4 -0.4 43 14-56 179-221 (237)
489 PF06697 DUF1191: Protein of u 21.8 1.2E+02 0.0025 24.1 3.2 35 25-59 218-252 (278)
490 PF07584 BatA: Aerotolerance r 21.8 51 0.0011 20.1 1.0 26 34-61 9-35 (77)
491 PF11118 DUF2627: Protein of u 21.7 37 0.00081 22.5 0.4 31 33-63 47-77 (77)
492 COG1006 MnhC Multisubunit Na+/ 21.7 1.5E+02 0.0032 20.6 3.4 21 31-51 80-100 (115)
493 PF06480 FtsH_ext: FtsH Extrac 21.6 23 0.0005 21.1 -0.6 41 29-69 1-43 (110)
494 PF10066 DUF2304: Uncharacteri 21.6 1.9E+02 0.004 19.0 3.8 28 32-59 6-33 (115)
495 COG5085 Predicted membrane pro 21.5 86 0.0019 24.6 2.4 35 24-58 91-126 (230)
496 KOG4503 Uncharacterized conser 21.5 86 0.0019 24.6 2.4 35 24-58 91-126 (230)
497 TIGR00908 2A0305 ethanolamine 21.4 1.1E+02 0.0024 23.4 3.0 26 31-56 411-436 (442)
498 PRK04098 sec-independent trans 21.3 1.7E+02 0.0036 21.5 3.8 40 32-79 9-58 (158)
499 PF13548 DUF4126: Domain of un 21.2 99 0.0022 22.5 2.6 24 28-51 150-175 (177)
500 PRK13706 conjugal transfer pil 21.2 1.3E+02 0.0027 23.5 3.3 24 36-59 158-181 (248)
No 1
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=99.21 E-value=2.3e-11 Score=72.82 Aligned_cols=36 Identities=33% Similarity=0.720 Sum_probs=33.9
Q ss_pred CCCceEehhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047723 23 NTGAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 23 ~tgv~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
..||+++++++++++|+++++|+||+||+|||..|+
T Consensus 7 p~GVIlVF~lVglv~i~iva~~iYRKw~aRkr~l~r 42 (43)
T PF08114_consen 7 PGGVILVFCLVGLVGIGIVALFIYRKWQARKRALQR 42 (43)
T ss_pred CCCeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999885
No 2
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=97.71 E-value=7.7e-06 Score=48.14 Aligned_cols=30 Identities=27% Similarity=0.435 Sum_probs=26.6
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
..+.+.+++++.++++++++|+|..|+|+|
T Consensus 11 vaIa~~VvVPV~vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 11 VAIAVGVVVPVGVIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred EEEEEEEEechHHHHHHHHHHhheEEeccC
Confidence 668888999999999999999999998876
No 3
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=96.58 E-value=0.0023 Score=44.63 Aligned_cols=47 Identities=26% Similarity=0.385 Sum_probs=21.3
Q ss_pred cCCCCceEehhHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcch
Q 047723 21 RSNTGAKVGIILLGLV-AVGLFSFFLFKLWQKKKREEQYARLLKLFEEDD 69 (79)
Q Consensus 21 ~~~tgv~VviIl~vlv-~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedD 69 (79)
+...+.+..||+-|++ ++++++++.|-.+|+|||..-...- +.++||
T Consensus 60 ~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~~~p--~P~~~d 107 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKSSSDVQP--LPEEDD 107 (122)
T ss_dssp SSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------------
T ss_pred CccccceeehhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC--CCCCCC
Confidence 3435555555555555 5666688899999999886332222 677733
No 4
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.46 E-value=0.0056 Score=39.89 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=27.1
Q ss_pred cccCCCCceEehhHHHHH-HHHHHHHHHHHHHHH
Q 047723 19 TSRSNTGAKVGIILLGLV-AVGLFSFFLFKLWQK 51 (79)
Q Consensus 19 ~~~~~tgv~VviIl~vlv-~v~l~~~~lYK~WQK 51 (79)
+.+-|-|.+|++++.+++ ++.++.+++|-||||
T Consensus 7 ~KGlnPGlIVLlvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 7 AKGLNPGLIVLLVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred ccCCCCCeEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence 367788999988888887 556668999999997
No 5
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=95.89 E-value=0.0085 Score=43.56 Aligned_cols=27 Identities=11% Similarity=0.337 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKKREE 56 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKKREe 56 (79)
+++++.+..++++.|++|.||=|||..
T Consensus 98 ~~Vl~g~s~l~i~yfvir~~R~r~~~r 124 (163)
T PF06679_consen 98 LYVLVGLSALAILYFVIRTFRLRRRNR 124 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 344444455556667889998777543
No 6
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.53 E-value=0.022 Score=43.24 Aligned_cols=34 Identities=32% Similarity=0.558 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHhhh
Q 047723 32 LLGLVAVGLFSFFLFKLWQKKKREE------QYARLLKLF 65 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQKKKREe------Q~AR~lkLF 65 (79)
+++.++++++++|.|+|||.++-++ +|+-+++.-
T Consensus 25 li~gviLg~~~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~ 64 (207)
T COG2976 25 LIVGVILGLGGLFGWRYWQSHQVEQAQEASAQYQNAIKAV 64 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577778899999999999986 455555544
No 7
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=95.26 E-value=0.012 Score=41.63 Aligned_cols=31 Identities=29% Similarity=0.421 Sum_probs=25.6
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHhHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKKKR 54 (79)
....++|.|+++++++++++.++=+|.||+|
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~~~~~~~R~~R 186 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMYGFFFWNRKKR 186 (189)
T ss_pred cceeEEEEccHHHHHHHHHHHhhheeeccce
Confidence 3458999999999888888888888887776
No 8
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=93.96 E-value=0.016 Score=45.70 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=0.0
Q ss_pred hhHHHHH-HHHHHHHHHHHHHHHhHHHHHHH
Q 047723 30 IILLGLV-AVGLFSFFLFKLWQKKKREEQYA 59 (79)
Q Consensus 30 iIl~vlv-~v~l~~~~lYK~WQKKKREeQ~A 59 (79)
++++.++ .+++|++++. ||.||+|++.++
T Consensus 218 iAL~sl~SLVIGFvlG~l-~WKkkq~~~~~~ 247 (273)
T PF02404_consen 218 IALPSLFSLVIGFVLGAL-YWKKKQRSLTQE 247 (273)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhhccccccc
Confidence 3344444 3444444444 999999966554
No 9
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.094 Score=33.00 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcchhhhhhhC
Q 047723 37 AVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEVELG 76 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedDdle~ELG 76 (79)
.+...+++.|=||.+||.+-++|+-. .|..+||.+++.|
T Consensus 19 ~l~fiavi~~ayr~~~K~~~d~aa~~-~l~l~Dd~q~~~~ 57 (60)
T COG4736 19 TLFFIAVIYFAYRPGKKGEFDEAARG-ILPLNDDAQDAAG 57 (60)
T ss_pred HHHHHHHHHHHhcccchhhHHHHhcc-CCCCCcchhhhhc
Confidence 33444667788899999899998753 3677888888876
No 10
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=93.82 E-value=0.22 Score=33.17 Aligned_cols=14 Identities=21% Similarity=0.563 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhHH
Q 047723 41 FSFFLFKLWQKKKR 54 (79)
Q Consensus 41 ~~~~lYK~WQKKKR 54 (79)
++.+.||.||.+++
T Consensus 18 ~~y~~~k~~ka~~~ 31 (87)
T PF10883_consen 18 LAYLWWKVKKAKKQ 31 (87)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 11
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=93.81 E-value=0.093 Score=39.40 Aligned_cols=37 Identities=8% Similarity=0.123 Sum_probs=24.9
Q ss_pred CCceEehhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 047723 24 TGAKVGIILLG-LVAVGLFSFFLFKLWQKKKREEQYAR 60 (79)
Q Consensus 24 tgv~VviIl~v-lv~v~l~~~~lYK~WQKKKREeQ~AR 60 (79)
+++.|++++++ ++.+|++++.+|-.||||---..+.|
T Consensus 99 ~~~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~~~~~~r 136 (202)
T PF06365_consen 99 YPTLIALVTSGSFLLLAILLGAGYCCHQRRSWSKKGQR 136 (202)
T ss_pred ceEEEehHHhhHHHHHHHHHHHHHHhhhhccCCcchhh
Confidence 56777777777 23566667778999999864333334
No 12
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=93.45 E-value=0.048 Score=36.13 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHh
Q 047723 38 VGLFSFFLFKLWQKKKREEQYARLLK 63 (79)
Q Consensus 38 v~l~~~~lYK~WQKKKREeQ~AR~lk 63 (79)
.+++-++.|+.|+|-||++.--|+++
T Consensus 19 aIvvW~iv~ieYrk~~rqrkId~li~ 44 (81)
T PF00558_consen 19 AIVVWTIVYIEYRKIKRQRKIDRLIE 44 (81)
T ss_dssp HHHHHHHH------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33445667888888888765555554
No 13
>PHA03265 envelope glycoprotein D; Provisional
Probab=93.07 E-value=0.12 Score=42.73 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=23.9
Q ss_pred ccCCCCceEehhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 047723 20 SRSNTGAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 20 ~~~~tgv~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ 57 (79)
|+||..-+=++|=.+++.+++++.|||-.|++||-...
T Consensus 343 s~~~~~~~g~~ig~~i~glv~vg~il~~~~rr~k~~~k 380 (402)
T PHA03265 343 SKSNSTFVGISVGLGIAGLVLVGVILYVCLRRKKELKK 380 (402)
T ss_pred CCCCCcccceEEccchhhhhhhhHHHHHHhhhhhhhhh
Confidence 44433333334445555667778889999999985443
No 14
>PF12669 P12: Virus attachment protein p12 family
Probab=92.67 E-value=0.16 Score=31.12 Aligned_cols=12 Identities=25% Similarity=0.307 Sum_probs=9.1
Q ss_pred HHHHHHHHhHHH
Q 047723 44 FLFKLWQKKKRE 55 (79)
Q Consensus 44 ~lYK~WQKKKRE 55 (79)
+++++|+++|+.
T Consensus 16 ~~r~~~k~~K~G 27 (58)
T PF12669_consen 16 AIRKFIKDKKKG 27 (58)
T ss_pred HHHHHHHHhhcC
Confidence 359999888864
No 15
>PF15345 TMEM51: Transmembrane protein 51
Probab=91.91 E-value=0.43 Score=36.90 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=21.6
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQYA 59 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~A 59 (79)
....|+++|+|..+..++.-+.-..=+||||.++.+
T Consensus 56 Kt~SVAyVLVG~Gv~LLLLSICL~IR~KRr~rq~~e 91 (233)
T PF15345_consen 56 KTFSVAYVLVGSGVALLLLSICLSIRDKRRRRQGEE 91 (233)
T ss_pred eeEEEEEehhhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 446788888887655555444555666666554433
No 16
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=91.71 E-value=0.032 Score=40.78 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 047723 37 AVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKRE 55 (79)
++++++.++|-+|.|+||.
T Consensus 62 ill~il~lvf~~c~r~kkt 80 (154)
T PF04478_consen 62 ILLGILALVFIFCIRRKKT 80 (154)
T ss_pred HHHHHHHhheeEEEecccC
Confidence 4555566667776666653
No 17
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=91.53 E-value=0.4 Score=32.01 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 047723 37 AVGLFSFFLFKLWQKKKREEQYAR 60 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~AR 60 (79)
++++...-+|++|++|.|-++|-|
T Consensus 31 iill~c~c~~~~~r~r~~~~~q~r 54 (102)
T PF11669_consen 31 IILLSCCCACRHRRRRRRLQQQQR 54 (102)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhc
Confidence 333456678999998877766555
No 18
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.53 E-value=0.035 Score=45.01 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=12.0
Q ss_pred eEehhHHHHH---HHHHHHHHHHHHHHHh
Q 047723 27 KVGIILLGLV---AVGLFSFFLFKLWQKK 52 (79)
Q Consensus 27 ~VviIl~vlv---~v~l~~~~lYK~WQKK 52 (79)
...+++.+++ +++++++..|++||.|
T Consensus 317 ~~~ill~~vv~~v~~ai~s~~i~q~r~er 345 (351)
T KOG3839|consen 317 LFLILLFVVVFLVGGAIFSIVIFQVRQER 345 (351)
T ss_pred hHHHHHHHHHHHHHhhheEEEEEeehhhh
Confidence 3334444444 4444455555555533
No 19
>PF14981 FAM165: FAM165 family
Probab=90.75 E-value=0.6 Score=28.91 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 047723 37 AVGLFSFFLFKLWQKKKREEQYAR 60 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~AR 60 (79)
.+.-++|..-|.||+|+-|+++.+
T Consensus 18 lilClaFAgvK~yQ~krlEak~~k 41 (51)
T PF14981_consen 18 LILCLAFAGVKMYQRKRLEAKLKK 41 (51)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH
Confidence 444458889999999998877654
No 20
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=90.19 E-value=0.2 Score=36.29 Aligned_cols=36 Identities=22% Similarity=0.509 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHhhhh
Q 047723 31 ILLGLVAVGLFSFFLFK--LWQKKKREEQYARLLKLFE 66 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK--~WQKKKREeQ~AR~lkLFE 66 (79)
..++++++.+++|++|| -|-+++|..-+.++-..++
T Consensus 287 ~~~~~~G~~~~~f~LYK~g~~~~~~~~r~~~~~~~~~~ 324 (354)
T PF05795_consen 287 PVLSVLGIPLIFFLLYKFGSWFNRRRGRRRRIINNNFN 324 (354)
T ss_pred hhhhhHHHHHHHHHHhccchhhcccccccccccccccc
Confidence 34445577778999999 6777777665555444444
No 21
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=89.87 E-value=0.54 Score=30.39 Aligned_cols=32 Identities=19% Similarity=0.501 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcchh
Q 047723 37 AVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDE 70 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedDd 70 (79)
+++++-|+++| ..|||.++++.++.=...||+
T Consensus 12 ~~~i~yf~~~r--pqkK~~k~~~~m~~~L~~Gd~ 43 (84)
T TIGR00739 12 IFLIFYFLIIR--PQRKRRKAHKKLIESLKKGDK 43 (84)
T ss_pred HHHHHHHheec--hHHHHHHHHHHHHHhCCCCCE
Confidence 33344444443 344555666677766666654
No 22
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=89.85 E-value=1.3 Score=29.65 Aligned_cols=15 Identities=27% Similarity=0.873 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 047723 35 LVAVGLFSFFLFKLW 49 (79)
Q Consensus 35 lv~v~l~~~~lYK~W 49 (79)
++++++++++.|..|
T Consensus 6 ~vll~ll~~l~y~l~ 20 (105)
T PRK00888 6 LLLLALLVWLQYSLW 20 (105)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444555566655
No 23
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=89.38 E-value=0.77 Score=33.42 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcchhhhh
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEV 73 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedDdle~ 73 (79)
+.++.++.++..+++++|+|+=++....-.+|++-|....++|.
T Consensus 17 m~~Ll~~Si~s~aiiieR~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (211)
T TIGR02797 17 MIGLALASVVTWTIWIAKSVELAGARRRLKRALKALGEARTLAE 60 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCHHH
Confidence 33344445666788899999887766666778887766555443
No 24
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=89.27 E-value=1.1 Score=30.54 Aligned_cols=16 Identities=19% Similarity=0.578 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 047723 37 AVGLFSFFLFKLWQKK 52 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKK 52 (79)
+++++++..|+.||++
T Consensus 33 ~~~~~~~~~~r~~~~~ 48 (146)
T PF14316_consen 33 LLILLLWRLWRRWRRN 48 (146)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 3444455555555554
No 25
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=89.23 E-value=1.1 Score=29.84 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 047723 32 LLGLVAVGLFSFFLFKLWQKKKREEQYARLL 62 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQKKKREeQ~AR~l 62 (79)
+++.++.+++++++|-+||-+|-.++-++|.
T Consensus 6 iv~~~~~v~~~i~~y~~~k~~ka~~~~~kL~ 36 (87)
T PF10883_consen 6 IVGGVGAVVALILAYLWWKVKKAKKQNAKLQ 36 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677999999999999888755543
No 26
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=88.80 E-value=0.88 Score=34.42 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=30.4
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcchhhhh
Q 047723 29 GIILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEV 73 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedDdle~ 73 (79)
++.+++++.++..+++++|+|+=++-.....++++.|..-.+++.
T Consensus 26 Vm~~Ll~~Si~swaiIieR~~~l~~~~~~~~~~~~~~~~~~~l~~ 70 (244)
T PRK10414 26 VMIGLILASVVTWAIFFSKSVEFFNQKRRLKREQQLLAEARSLDQ 70 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 344444446666688999999987766665788888766555443
No 27
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=88.78 E-value=0.81 Score=33.44 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=19.7
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
+|++. =|++++++.++.++--|--+||||
T Consensus 114 ~g~Ia-GIvsav~valvGAvsSyiaYqkKK 142 (169)
T PF12301_consen 114 AGTIA-GIVSAVVVALVGAVSSYIAYQKKK 142 (169)
T ss_pred cchhh-hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44433 444666666667777888889998
No 28
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=88.78 E-value=0.13 Score=34.08 Aligned_cols=34 Identities=29% Similarity=0.343 Sum_probs=17.7
Q ss_pred ccCCCCceEehhHHHHH-HHHHHHHHHHHHHHHhH
Q 047723 20 SRSNTGAKVGIILLGLV-AVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 20 ~~~~tgv~VviIl~vlv-~v~l~~~~lYK~WQKKK 53 (79)
++.++|.+..|.+-+++ +.++++|+.|-++.|||
T Consensus 61 ~~ls~gaiagi~vg~~~~v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 61 SGLSTGAIAGISVAVVAVVGGLVGFLCWWFVCRGK 95 (96)
T ss_pred CCcccccEEEEEeehhhHHHHHHHHHhheeEEeec
Confidence 34446776666665444 33444555555554443
No 29
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=88.57 E-value=0.61 Score=36.58 Aligned_cols=26 Identities=27% Similarity=0.508 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHH-----HhHHHHHHHHHH
Q 047723 37 AVGLFSFFLFKLWQ-----KKKREEQYARLL 62 (79)
Q Consensus 37 ~v~l~~~~lYK~WQ-----KKKREeQ~AR~l 62 (79)
+++++.+|+|-.|| |+|+-+||-.||
T Consensus 267 iIVLIMvIIYLILRYRRKKKmkKKlQYiKLL 297 (299)
T PF02009_consen 267 IIVLIMVIIYLILRYRRKKKMKKKLQYIKLL 297 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 44444555555553 223445555444
No 30
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=88.47 E-value=0.67 Score=26.78 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 047723 35 LVAVGLFSFFLFKLWQKKKREEQYARLL 62 (79)
Q Consensus 35 lv~v~l~~~~lYK~WQKKKREeQ~AR~l 62 (79)
+..++.++.+.|-+|.++|+.-+.|.-|
T Consensus 17 ~~~~~F~gi~~w~~~~~~k~~~e~aa~l 44 (49)
T PF05545_consen 17 LFFVFFIGIVIWAYRPRNKKRFEEAANL 44 (49)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHHHcc
Confidence 3344445667888898877666666544
No 31
>PF06864 PAP_PilO: Pilin accessory protein (PilO); InterPro: IPR009663 This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body []. This family does not seem to be related to IPR007445 from INTERPRO.
Probab=88.00 E-value=0.83 Score=36.00 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 047723 35 LVAVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 35 lv~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
++++++++...|.+||..++++++
T Consensus 172 ~~~~~~~~~~g~~~~~~~~~~~~~ 195 (414)
T PF06864_consen 172 LVVLALAGGYGWWYWQAQQEEARR 195 (414)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHH
Confidence 334445567788899876544333
No 32
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=87.90 E-value=1.4 Score=29.99 Aligned_cols=36 Identities=22% Similarity=0.424 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFE 66 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFE 66 (79)
-++.+++++++++++|+.|+++||-.-+..-|+.+.
T Consensus 24 wll~~lll~~~~~~~~~~~r~~~~~~yrr~Al~~L~ 59 (146)
T PF14316_consen 24 WLLLALLLLLLILLLWRLWRRWRRNRYRREALRELA 59 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 445556888889999999999998754444444443
No 33
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=87.28 E-value=0.9 Score=33.75 Aligned_cols=20 Identities=35% Similarity=0.560 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 047723 30 IILLGLVAVGLFSFFLFKLWQ 50 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQ 50 (79)
=|+++|.++ .++||+||||+
T Consensus 166 GIVL~LGv~-aI~ff~~KF~k 185 (186)
T PF05283_consen 166 GIVLTLGVL-AIIFFLYKFCK 185 (186)
T ss_pred HHHHHHHHH-HHHHHHhhhcc
Confidence 344445433 34677999986
No 34
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=87.15 E-value=0.86 Score=30.12 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=11.1
Q ss_pred CCceEehhHHHHHHHHHHHHHHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLF 46 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lY 46 (79)
.+.+++++++++++++++..++|
T Consensus 60 ~~~iili~lls~v~IlVily~Iy 82 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVILYAIY 82 (101)
T ss_pred cccchHHHHHHHHHHHHHHhhhe
Confidence 34455555555554444444444
No 35
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=86.74 E-value=1.4 Score=29.70 Aligned_cols=32 Identities=22% Similarity=0.536 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcchh
Q 047723 37 AVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDE 70 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedDd 70 (79)
+++++-|+++|- .|||+++++.++.=..-+|+
T Consensus 27 i~~i~yf~~~Rp--qkK~~k~~~~~~~~Lk~Gd~ 58 (106)
T PRK05585 27 FFAIFYFLIIRP--QQKRQKEHKKMLSSLAKGDE 58 (106)
T ss_pred HHHHHHHHhccH--HHHHHHHHHHHHHhcCCCCE
Confidence 333444445442 34444555666665555554
No 36
>PRK10506 hypothetical protein; Provisional
Probab=86.60 E-value=1.8 Score=30.08 Aligned_cols=42 Identities=21% Similarity=0.359 Sum_probs=25.3
Q ss_pred CCceEehhHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 047723 24 TGAKVGIILLGLV---AVGLFSFFLFKLWQKKKREEQYARLLKLF 65 (79)
Q Consensus 24 tgv~VviIl~vlv---~v~l~~~~lYK~WQKKKREeQ~AR~lkLF 65 (79)
.|-.++=++++++ +++.+++-.|.-|+.+.|-++.++-+.-|
T Consensus 9 ~GFTLiEllvvl~Ii~il~~~a~p~~~~~~~~~~~~~~~~~l~~~ 53 (162)
T PRK10506 9 RGYTLIELLVVMTIVSILSAWGLYGWQRWQQRQRLWQTAQQLLDF 53 (162)
T ss_pred CCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544443333333 44455556667777888888888777654
No 37
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=85.72 E-value=1.6 Score=32.51 Aligned_cols=39 Identities=5% Similarity=0.073 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcc
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEED 68 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEed 68 (79)
+.++.++.++..++++.|+|+=++...+..+|++-|.+.
T Consensus 18 m~~Ll~~Si~s~aIiieR~~~l~~~~~~~~~f~~~~~~~ 56 (227)
T PRK10801 18 MLILIGFSIASWAIIIQRTRILNAAAREAEAFEDKFWSG 56 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 334444466667888999999988888888888877553
No 38
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=85.66 E-value=2.8 Score=24.65 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 047723 37 AVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ 57 (79)
++++..+.+.++|+-|++-..
T Consensus 32 ~llg~l~~~~~~~~~r~~~~~ 52 (68)
T PF06305_consen 32 ALLGWLLSLPSRLRLRRRIRR 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666655554333
No 39
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=85.57 E-value=1.4 Score=30.30 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcchh
Q 047723 32 LLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDE 70 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedDd 70 (79)
++.+++++++.|+++|- | |||..+|+.++.=..-+|+
T Consensus 8 l~lv~i~~i~yF~~iRP-Q-kKr~K~~~~m~~~Lk~GD~ 44 (109)
T PRK05886 8 LPFLLIMGGFMYFASRR-Q-RKAMQATIDLHESLQPGDR 44 (109)
T ss_pred HHHHHHHHHHHHHHccH-H-HHHHHHHHHHHHhcCCCCE
Confidence 33344455556655543 3 4445566667665555553
No 40
>PRK01844 hypothetical protein; Provisional
Probab=85.56 E-value=0.66 Score=30.33 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=18.6
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
+++.++++++++++.++++||+-|+|=+|.
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~ 32 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMMNY 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566666667777777776654
No 41
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=85.42 E-value=0.26 Score=40.13 Aligned_cols=19 Identities=11% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 047723 37 AVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKRE 55 (79)
+++++.+.+++..+|++|+
T Consensus 368 v~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 368 VGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp -------------------
T ss_pred HHHHhheeeeehhcccccc
Confidence 3344445555555555555
No 42
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=84.44 E-value=1.9 Score=27.54 Aligned_cols=33 Identities=21% Similarity=0.503 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcchh
Q 047723 36 VAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDE 70 (79)
Q Consensus 36 v~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedDd 70 (79)
+.++++-|++++ ..|||+++++.++.=..-+|+
T Consensus 10 ~~~~i~yf~~~r--pqkk~~k~~~~m~~~Lk~Gd~ 42 (82)
T PF02699_consen 10 IIFVIFYFLMIR--PQKKQQKEHQEMLASLKPGDE 42 (82)
T ss_dssp HHHHHHHHHTHH--HHHHHHHHHTTGGG-------
T ss_pred HHHHHHhhheec--HHHHHHHHHHHHHHcCCCCCE
Confidence 344444444443 445555666666655554443
No 43
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=84.30 E-value=1.5 Score=34.53 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=17.8
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHh
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKK 52 (79)
.|+|+++|+.++++..+.+||.-+|+
T Consensus 192 pvvIaliVitl~vf~LvgLyr~C~k~ 217 (259)
T PF07010_consen 192 PVVIALIVITLSVFTLVGLYRMCWKT 217 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44455555556777788899987765
No 44
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=84.30 E-value=1.8 Score=29.53 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKK 53 (79)
+++++++.+++++++.++-+++.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~ 24 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQ 24 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccch
Confidence 34555555566666777766553
No 45
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=84.03 E-value=0.29 Score=31.34 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=0.0
Q ss_pred CceEehhHHHHHHHHHHHHHHHHH
Q 047723 25 GAKVGIILLGLVAVGLFSFFLFKL 48 (79)
Q Consensus 25 gv~VviIl~vlv~v~l~~~~lYK~ 48 (79)
+++..+++-.+++++++.|++||+
T Consensus 13 avIaG~Vvgll~ailLIlf~iyR~ 36 (64)
T PF01034_consen 13 AVIAGGVVGLLFAILLILFLIYRM 36 (64)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344555556666655
No 46
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=83.50 E-value=0.85 Score=26.14 Aligned_cols=18 Identities=28% Similarity=0.456 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 047723 37 AVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKR 54 (79)
++.+.+|+.||++|.+=+
T Consensus 9 ~l~ga~f~~fKKyQ~~vn 26 (33)
T PF10855_consen 9 ILGGAAFYGFKKYQNHVN 26 (33)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 445578999999997644
No 47
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=83.22 E-value=2.8 Score=30.22 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=13.8
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhHHH
Q 047723 28 VGIILLGLVAVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 28 VviIl~vlv~v~l~~~~lYK~WQKKKRE 55 (79)
|+++++++++.+++++++.+..-+++.+
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~~~~~~~~ 30 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKKINRKKLE 30 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555444443
No 48
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.14 E-value=1.4 Score=35.19 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHH
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKKR 54 (79)
++++.++++.+++++++++|++++-
T Consensus 4 ~v~vlVaa~llV~~i~l~l~~r~ra 28 (299)
T KOG3054|consen 4 IVAVLVAAALLVAVILLFLWKRRRA 28 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555556777788899999998873
No 49
>KOG4550 consensus Predicted membrane protein [Function unknown]
Probab=83.05 E-value=1.2 Score=38.31 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 047723 34 GLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 34 vlv~v~l~~~~lYK~WQKKK 53 (79)
+.++|.+++++++-+||.||
T Consensus 569 ~gvC~~il~ii~~Lh~~EKk 588 (606)
T KOG4550|consen 569 IGVCVFILAIIGILHWQEKK 588 (606)
T ss_pred HHHHHHHHHHHhheehhhhh
Confidence 33466677788899999987
No 50
>PLN03150 hypothetical protein; Provisional
Probab=82.65 E-value=1.2 Score=36.74 Aligned_cols=31 Identities=26% Similarity=0.450 Sum_probs=18.4
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHhHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKKKR 54 (79)
++.++++++.++++++++.++++-+|++||+
T Consensus 543 ~~~~i~~~~~~~~~~l~~~~~~~~~~~~r~~ 573 (623)
T PLN03150 543 VGAKIGIAFGVSVAFLFLVICAMCWWKRRQN 573 (623)
T ss_pred CceEEEEEhHHHHHHHHHHHHHhhheeehhh
Confidence 4555555555555545555566777777764
No 51
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=82.65 E-value=0.43 Score=36.03 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 047723 33 LGLVAVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 33 ~vlv~v~l~~~~lYK~WQKKKRE 55 (79)
.+|++++++++++|-++|||.|.
T Consensus 279 ~~La~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 279 AALAGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred HHHHHHHHHHHHhheeEeccccc
Confidence 33457777788899999998865
No 52
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.59 E-value=0.12 Score=41.92 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHH
Q 047723 30 IILLGLVAVGLF---SFFLFKLWQKKKREEQYARLL 62 (79)
Q Consensus 30 iIl~vlv~v~l~---~~~lYK~WQKKKREeQ~AR~l 62 (79)
..+.++++++.+ +++.|.+.|+|+ |++|.||+
T Consensus 317 ~~~ill~~vv~~v~~ai~s~~i~q~r~-er~Rkrfy 351 (351)
T KOG3839|consen 317 LFLILLFVVVFLVGGAIFSIVIFQVRQ-ERNRKRFY 351 (351)
T ss_pred hHHHHHHHHHHHHHhhheEEEEEeehh-hhhhcccC
Confidence 334444444433 334456777665 88888874
No 53
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=82.51 E-value=0.4 Score=37.57 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHH-HHHHHHHh
Q 047723 35 LVAVGLFSFFLFKLWQKKKRE-EQYARLLK 63 (79)
Q Consensus 35 lv~v~l~~~~lYK~WQKKKRE-eQ~AR~lk 63 (79)
|++.++++++.||.=++-|-+ |+|+-|++
T Consensus 159 LLIA~iIa~icyrrkR~GK~~~ee~~~f~~ 188 (290)
T PF05454_consen 159 LLIAGIIACICYRRKRKGKMSLEEQKTFIS 188 (290)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHhhhhhhccccccchhHHHHh
Confidence 334555566677733333444 56777776
No 54
>PF15102 TMEM154: TMEM154 protein family
Probab=82.48 E-value=0.12 Score=37.37 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=9.3
Q ss_pred eEehhHH-HH-HHHHHHHHHHHHHH
Q 047723 27 KVGIILL-GL-VAVGLFSFFLFKLW 49 (79)
Q Consensus 27 ~VviIl~-vl-v~v~l~~~~lYK~W 49 (79)
+++|+++ ++ +++++++++++.+.
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~ 82 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYY 82 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEE
Confidence 4444444 33 23333344443333
No 55
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=82.28 E-value=0.39 Score=33.57 Aligned_cols=15 Identities=33% Similarity=0.299 Sum_probs=8.1
Q ss_pred CCCceEehhHHHHHH
Q 047723 23 NTGAKVGIILLGLVA 37 (79)
Q Consensus 23 ~tgv~VviIl~vlv~ 37 (79)
.++++|.||+.++++
T Consensus 77 ~~~iivgvi~~Vi~I 91 (179)
T PF13908_consen 77 ITGIIVGVICGVIAI 91 (179)
T ss_pred eeeeeeehhhHHHHH
Confidence 455666565544443
No 56
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.04 E-value=2.7 Score=26.28 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=6.4
Q ss_pred CceEehhHHHHHHHHH
Q 047723 25 GAKVGIILLGLVAVGL 40 (79)
Q Consensus 25 gv~VviIl~vlv~v~l 40 (79)
|-.++=+++|++++.+
T Consensus 9 GFTLiElLVvl~Iigi 24 (149)
T COG2165 9 GFTLIELLVVLAIIGI 24 (149)
T ss_pred CcchHHHHHHHHHHHH
Confidence 4333334444443333
No 57
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=81.96 E-value=1.5 Score=34.46 Aligned_cols=21 Identities=14% Similarity=0.482 Sum_probs=13.9
Q ss_pred eEehhHHHHHHHHHHHHHHHH
Q 047723 27 KVGIILLGLVAVGLFSFFLFK 47 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK 47 (79)
+++|++.||+.+|+-...-||
T Consensus 262 iiaIliIVLIMvIIYLILRYR 282 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILRYR 282 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777773
No 58
>PRK00523 hypothetical protein; Provisional
Probab=81.76 E-value=1.2 Score=29.05 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=18.8
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
+++.+.++++++++.++++||+-|+|=+|.
T Consensus 4 ~~l~I~l~i~~li~G~~~Gffiark~~~k~ 33 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIGYFVSKKMFKKQ 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666667777777776664
No 59
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=81.70 E-value=0.077 Score=39.80 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=14.2
Q ss_pred cCCCCceEehhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 047723 21 RSNTGAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 21 ~~~tgv~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ 57 (79)
++++|. +++++++++++++++ .|-+-+|+|.+..
T Consensus 157 ks~~g~--ll~lllv~l~gGGa~-yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 157 KSGMGS--LLLLLLVALIGGGAY-YYFKFYKPKQEEK 190 (218)
T ss_pred ccchHH--HHHHHHHHHhhcceE-EEEEEeccccccc
Confidence 344554 333333333333344 4444444444433
No 60
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=81.53 E-value=1.4 Score=38.64 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=27.6
Q ss_pred cCCCCceEehhHHHHHHHHHHHHHHHHHHHHhHHH
Q 047723 21 RSNTGAKVGIILLGLVAVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 21 ~~~tgv~VviIl~vlv~v~l~~~~lYK~WQKKKRE 55 (79)
.+|.=+++.++++++++++++.++.||+++++|=|
T Consensus 266 ~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K~e 300 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLIIIILYWKLCRKNKLE 300 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHHHHHHHHHhcccccC
Confidence 34455677788888888888888899999988855
No 61
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=81.25 E-value=3.1 Score=30.52 Aligned_cols=10 Identities=40% Similarity=0.571 Sum_probs=5.2
Q ss_pred hcchhhhhhh
Q 047723 66 EEDDELEVEL 75 (79)
Q Consensus 66 EedDdle~EL 75 (79)
++|||.++|+
T Consensus 82 ~~deD~~~~~ 91 (248)
T PF11368_consen 82 EEDEDENEEY 91 (248)
T ss_pred cccchHHHHH
Confidence 3455555543
No 62
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=81.25 E-value=2.2 Score=28.28 Aligned_cols=36 Identities=14% Similarity=0.236 Sum_probs=15.2
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 047723 31 ILLGL-VAVGLFSFFLFKLWQKKKREEQYARLLKLFE 66 (79)
Q Consensus 31 Il~vl-v~v~l~~~~lYK~WQKKKREeQ~AR~lkLFE 66 (79)
.++++ +++++..++-...|+.=|+-..|.|+.+|++
T Consensus 8 ~iialiv~~iiaIvvW~iv~ieYrk~~rqrkId~li~ 44 (81)
T PF00558_consen 8 AIIALIVALIIAIVVWTIVYIEYRKIKRQRKIDRLIE 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33344 4555555656666999999999999999999
No 63
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=80.28 E-value=9.8 Score=27.30 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=23.9
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
++.++-.++=+|+++.+.++.+.-+-||..|.--+
T Consensus 82 ~d~aLp~VIGGLcaL~LaamGA~~LLrR~cRr~ar 116 (126)
T PF03229_consen 82 VDFALPLVIGGLCALTLAAMGAGALLRRCCRRAAR 116 (126)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666777777777777777777776433
No 64
>PTZ00046 rifin; Provisional
Probab=79.91 E-value=1.7 Score=35.29 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=9.4
Q ss_pred HHHhHHHHHHHHHHhhhhc
Q 047723 49 WQKKKREEQYARLLKLFEE 67 (79)
Q Consensus 49 WQKKKREeQ~AR~lkLFEe 67 (79)
+||||+-.-....+||.+|
T Consensus 340 YRRKKKMkKKLQYiKLL~e 358 (358)
T PTZ00046 340 YRRKKKMKKKLQYIKLLEE 358 (358)
T ss_pred hhhcchhHHHHHHHHHhcc
Confidence 4444444444445555553
No 65
>PF02430 AMA-1: Apical membrane antigen 1; InterPro: IPR003298 A novel antigen of Plasmodium falciparum has been cloned that contains a hydrophobic domain typical of an integral membrane protein. The antigen is designated apical membrane antigen 1 (AMA-1) by virtue of appearing to be located in the apical complex []. AMA-1 appears to be transported to the merozoite surface close to the time of schizont rupture. The 66kDa merozoite surface antigen (PK66) of Plasmodium knowlesi, a simian malaria, possesses vaccine-related properties believed to originate from a receptor-like role in parasite invasion of erythrocytes []. The sequence of PK66 is conserved throughout plasmodium, and shows high similarity to P. falciparum AMA-1. Following schizont rupture, the distribution of PK66 changes in a coordinate manner associated with merozoite invasion. Prior to rupture, the protein is concentrated at the apical end, following which it distributes itself entirely across the surface of the free merozoite. Immunofluorescence studies suggest that, during invasion, PK66 is excluded from the erythrocyte at, and behind, the invasion interface []. ; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2Y8R_D 2X2Z_A 2Y8T_A 2Y8S_D 1HN6_A 2Z8V_B 2Z8W_A 1Z40_E 2Q8B_A 2Q8A_A ....
Probab=79.70 E-value=0.58 Score=39.39 Aligned_cols=30 Identities=30% Similarity=0.528 Sum_probs=0.0
Q ss_pred CceEehhHHHHHHHHHHHHHHHH-HHHHhHH
Q 047723 25 GAKVGIILLGLVAVGLFSFFLFK-LWQKKKR 54 (79)
Q Consensus 25 gv~VviIl~vlv~v~l~~~~lYK-~WQKKKR 54 (79)
-+++|++..++++++++++..|| +|..||.
T Consensus 430 ~~~~~~~~~~~~~~~l~~~~~~k~~~~~kk~ 460 (471)
T PF02430_consen 430 IVIIISIATGAVLLALAIYWYYKRLWKTKKK 460 (471)
T ss_dssp -------------------------------
T ss_pred eehhhHHHHHHHHHHHHHHHHHhhhhccccC
Confidence 34444445555566666677777 7776554
No 66
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=79.12 E-value=1.9 Score=34.96 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=9.0
Q ss_pred HHHhHHHHHHHHHHhhhhc
Q 047723 49 WQKKKREEQYARLLKLFEE 67 (79)
Q Consensus 49 WQKKKREeQ~AR~lkLFEe 67 (79)
+||||+-.-....+||.+|
T Consensus 335 YRRKKKMkKKLQYiKLL~e 353 (353)
T TIGR01477 335 YRRKKKMKKKLQYIKLLNE 353 (353)
T ss_pred hhhcchhHHHHHHHHHhcc
Confidence 3444444444444555543
No 67
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=78.84 E-value=2 Score=31.11 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=13.1
Q ss_pred CceEehhHHHHHHHHHHHHHHHHH
Q 047723 25 GAKVGIILLGLVAVGLFSFFLFKL 48 (79)
Q Consensus 25 gv~VviIl~vlv~v~l~~~~lYK~ 48 (79)
.+.++||.++++++++++++.|-+
T Consensus 18 ~l~~iIi~~~llll~~~G~~~~~~ 41 (182)
T PRK08455 18 ALLIIIIGVVVLLLLIVGVIAMLL 41 (182)
T ss_pred eeEEehHHHHHHHHHHHHHHHHHH
Confidence 344445545555666666666643
No 68
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=78.76 E-value=8.3 Score=24.94 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcchhhhh
Q 047723 33 LGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEV 73 (79)
Q Consensus 33 ~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedDdle~ 73 (79)
++..++.+++.++||+---..|-..||.|-|=+.--+|-|.
T Consensus 20 ~~a~~lsl~~~~~~k~~~~~pRK~aYadFYknYD~~kdFer 60 (70)
T cd00927 20 IVAFVLSLGAAAAYKFLVNEPRKKAYADFYKTYDAMKDFER 60 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccChHHHHHH
Confidence 33345555666677776666777789999999887777764
No 69
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=78.58 E-value=2.1 Score=28.00 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=13.8
Q ss_pred CCceEehhHHHHHHHHHHHHHHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLF 46 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lY 46 (79)
++..++++.+..++++++.+++|
T Consensus 46 ~~~~~~ii~ii~v~ii~~l~flY 68 (72)
T PF12575_consen 46 FNWIILIISIIFVLIIVLLTFLY 68 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666666666676
No 70
>PRK11677 hypothetical protein; Provisional
Probab=78.58 E-value=2.8 Score=29.63 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=13.8
Q ss_pred ehhHHHHHHHHHHHHHHHHHHH
Q 047723 29 GIILLGLVAVGLFSFFLFKLWQ 50 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lYK~WQ 50 (79)
+++++++++.+++++++.|+-.
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 4555666666666777777633
No 71
>TIGR03064 sortase_srtB sortase, SrtB family. Members of this transpeptidase family are, in most cases, designated sortase B, product of the srtB gene. This protein shows only distant similarity to the sortase A family, for which there may be several members in a single bacterial genome. Typical SrtB substrate motifs include NAKTN, NPKSS, etc, and otherwise resemble the LPXTG sorting signals recognized by sortase A proteins.
Probab=78.49 E-value=4.1 Score=30.57 Aligned_cols=25 Identities=4% Similarity=0.109 Sum_probs=16.9
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhcc
Q 047723 44 FLFKLWQKKKREEQYARLLKLFEED 68 (79)
Q Consensus 44 ~lYK~WQKKKREeQ~AR~lkLFEed 68 (79)
+.+.+|+-++-++++..+-++.+++
T Consensus 21 l~~~~~~~~~~~~~~~~~~~~~~~~ 45 (232)
T TIGR03064 21 LGQIFYDYYTNRQVLAEAQQVYKKS 45 (232)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhhcc
Confidence 3445577777777777777777665
No 72
>PF13498 DUF4122: Domain of unknown function (DUF4122)
Probab=78.46 E-value=3.6 Score=31.80 Aligned_cols=20 Identities=35% Similarity=0.803 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhHH-HHHHHH
Q 047723 41 FSFFLFKLWQKKKR-EEQYAR 60 (79)
Q Consensus 41 ~~~~lYK~WQKKKR-EeQ~AR 60 (79)
.+.+|||+|+-||| +++-.+
T Consensus 13 ~~yllykvw~~k~ri~~icdl 33 (220)
T PF13498_consen 13 AAYLLYKVWKQKKRIKEICDL 33 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 46789999976665 444333
No 73
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=78.46 E-value=4.3 Score=27.43 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 047723 35 LVAVGLFSFFLFKLWQKKKREEQYAR 60 (79)
Q Consensus 35 lv~v~l~~~~lYK~WQKKKREeQ~AR 60 (79)
+++.++.-++.|..|++.+|.+.++|
T Consensus 129 ~v~~~i~Y~l~~~~~~~~r~~r~~~r 154 (154)
T PF09835_consen 129 IVLGIISYFLVYFLVRKYRKRRRKRR 154 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 33444445556666665555555544
No 74
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=78.37 E-value=3.1 Score=27.88 Aligned_cols=22 Identities=14% Similarity=0.531 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 047723 33 LGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 33 ~vlv~v~l~~~~lYK~WQKKKR 54 (79)
+++++++++.+|+.=+|..|||
T Consensus 5 ~~iii~~i~l~~~~~~~~~rRR 26 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHNRRR 26 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334434443
No 75
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=78.26 E-value=9.1 Score=21.99 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 047723 37 AVGLFSFFLFKLWQKKKREEQYARLL 62 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~AR~l 62 (79)
++++++.++.-.|++|+...+-+++.
T Consensus 16 ~l~l~~li~~~~~~~r~~~~~l~~~~ 41 (45)
T TIGR03141 16 ALVLAGLILWSLLDRRRLLRELRRLE 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666777777777665555543
No 76
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=77.73 E-value=5.8 Score=31.63 Aligned_cols=39 Identities=26% Similarity=0.282 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHhhhhcch
Q 047723 31 ILLGLVAVGLFSFFLFKLWQ-KKKREEQYARLLKLFEEDD 69 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQ-KKKREeQ~AR~lkLFEedD 69 (79)
+++..+..+++....|-+|| |.||+..+.|-++.-+++-
T Consensus 5 ~~~~~~~~~~~~~~a~~~~~~~~~r~~~~~~~i~~~~~~~ 44 (309)
T COG4965 5 YLVLAALSALLLAYAFLGWRSKSKRARIRNRRIKAAATDL 44 (309)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444555556888999 9999999999888877653
No 77
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=77.62 E-value=8.2 Score=26.50 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHh-----HHHHHHHHHHhhhhcchhhhhh
Q 047723 39 GLFSFFLFKLWQKK-----KREEQYARLLKLFEEDDELEVE 74 (79)
Q Consensus 39 ~l~~~~lYK~WQKK-----KREeQ~AR~lkLFEedDdle~E 74 (79)
+++++++|=||+.. |++.++.++-.|=++-.+++.+
T Consensus 87 Va~~li~~E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~ 127 (134)
T PF07047_consen 87 VAAGLIIYEYWRSARKEAKKEEELQERLEELEERIEELEEQ 127 (134)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888754 4555566666665555555543
No 78
>PF14163 SieB: Superinfection exclusion protein B
Probab=77.62 E-value=4.2 Score=27.73 Aligned_cols=28 Identities=21% Similarity=0.476 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHH----HHHhHHHHH-HHHHHhh
Q 047723 37 AVGLFSFFLFKL----WQKKKREEQ-YARLLKL 64 (79)
Q Consensus 37 ~v~l~~~~lYK~----WQKKKREeQ-~AR~lkL 64 (79)
.++.+.-.+|+. ||+|++++. ..++..|
T Consensus 47 li~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~L 79 (151)
T PF14163_consen 47 LIAQLLSFIYKEAKDRYQRKRKKKKIEKKLNSL 79 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333333344444 555555333 3333333
No 79
>COG4968 PilE Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.48 E-value=6.9 Score=28.29 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=30.5
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHhh
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLW----QKKKREEQYARLLKL 64 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~W----QKKKREeQ~AR~lkL 64 (79)
-|-.+|=+.++++++++++.|.|-=| +|-+|-+-+|-|++.
T Consensus 6 rGFTLIELmIvVaIv~ILa~IAyPSY~~yv~rs~R~~a~A~L~~~ 50 (139)
T COG4968 6 RGFTLIELMIVVAIVGILALIAYPSYQNYVLRSRRSAAKAALLEN 50 (139)
T ss_pred cCccHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 36666667777778888888888655 578888888888753
No 80
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.15 E-value=6.5 Score=24.51 Aligned_cols=14 Identities=21% Similarity=-0.247 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 047723 37 AVGLFSFFLFKLWQ 50 (79)
Q Consensus 37 ~v~l~~~~lYK~WQ 50 (79)
++++-.+..++-.+
T Consensus 27 ~~~~p~~~~~~~~~ 40 (149)
T COG2165 27 ALALPSLQGSIDKA 40 (149)
T ss_pred HHHHhhhhhHHHHH
Confidence 44444444444444
No 81
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=77.11 E-value=6.4 Score=28.76 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcc
Q 047723 33 LGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEED 68 (79)
Q Consensus 33 ~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEed 68 (79)
+.++.++.++++++|+|.=++......+|++-|.+.
T Consensus 20 Ll~~Sii~~aviieR~~~~~~~~~~~~~~~~~~~~~ 55 (215)
T TIGR02796 20 LLLASIISWAIIFQKFFIFRRARREAEEFEDRFWSG 55 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHcC
Confidence 333455556788888887665554455666655443
No 82
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=76.98 E-value=4 Score=28.16 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=14.0
Q ss_pred HHhHHHHHHHHHHhhhhcchh
Q 047723 50 QKKKREEQYARLLKLFEEDDE 70 (79)
Q Consensus 50 QKKKREeQ~AR~lkLFEedDd 70 (79)
..|||..+|+.++.=..-||+
T Consensus 22 PQkKr~Ke~~em~~sLk~GD~ 42 (113)
T PRK06531 22 QQKKQAQERQNQLNAIQKGDE 42 (113)
T ss_pred hHHHHHHHHHHHHHhcCCCCE
Confidence 445666677778776666664
No 83
>PHA02047 phage lambda Rz1-like protein
Probab=76.94 E-value=6.6 Score=27.27 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHH---HHHH-HHHH
Q 047723 30 IILLGLVAVGLF---SFFL-FKLW 49 (79)
Q Consensus 30 iIl~vlv~v~l~---~~~l-YK~W 49 (79)
+++.++|+++++ +|+. |+ |
T Consensus 6 ~~~~~~v~~~~g~~y~~~~~~r-~ 28 (101)
T PHA02047 6 VAILVLVVVALGASYGFVQSYR-A 28 (101)
T ss_pred HHHHHHHHHHhhhhHHHHHHHH-H
Confidence 334444455555 6766 77 7
No 84
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=76.86 E-value=1.7 Score=26.45 Aligned_cols=14 Identities=14% Similarity=0.949 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhHHH
Q 047723 42 SFFLFKLWQKKKRE 55 (79)
Q Consensus 42 ~~~lYK~WQKKKRE 55 (79)
+..+|-+|||+|++
T Consensus 33 ~lt~yal~r~~~~~ 46 (46)
T PF11431_consen 33 GLTIYALWRRRRKQ 46 (46)
T ss_dssp HHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhccC
Confidence 55689999998853
No 85
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=76.10 E-value=2.8 Score=27.26 Aligned_cols=23 Identities=22% Similarity=0.660 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKK 53 (79)
++++++++++.++++|-.+.|++
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 44455566777888999998876
No 86
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=76.03 E-value=2.1 Score=34.82 Aligned_cols=37 Identities=24% Similarity=0.482 Sum_probs=27.0
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKKKREEQYARLLK 63 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lk 63 (79)
+|+|++.||+.+|+-...=||-=.|.|+-+||-.||+
T Consensus 316 iIAIvvIVLIMvIIYLILRYRRKKKMkKKLQYiKLL~ 352 (353)
T TIGR01477 316 IIAILIIVLIMVIIYLILRYRRKKKMKKKLQYIKLLN 352 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhc
Confidence 3445555555555666667888899999999999986
No 87
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=75.98 E-value=0.78 Score=33.31 Aligned_cols=30 Identities=10% Similarity=0.092 Sum_probs=21.2
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 047723 28 VGIILLGLVAVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 28 VviIl~vlv~v~l~~~~lYK~WQKKKREeQ 57 (79)
+++++.++.++.++.++.|++.+|+|--.|
T Consensus 105 ~il~il~~i~is~~~~~~yr~~r~~~~~~~ 134 (139)
T PHA03099 105 GIVLVLVGIIITCCLLSVYRFTRRTKLPLQ 134 (139)
T ss_pred HHHHHHHHHHHHHHHHhhheeeecccCchh
Confidence 344445555777778889999999986554
No 88
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=75.87 E-value=21 Score=28.07 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=14.4
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHh
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKK 52 (79)
.+..+.++.+.+++.++++++.|-.+|-.
T Consensus 28 ~~~~l~~lalll~~alg~~~~~~~~~q~~ 56 (372)
T PF04375_consen 28 GGSGLALLALLLALALGAGGWYWQQQQLQ 56 (372)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444434333334444566677766643
No 89
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=75.82 E-value=4.7 Score=32.40 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhHHHH---HHHHHHhhhhcchhh
Q 047723 37 AVGLFSFFLFKLWQKKKREE---QYARLLKLFEEDDEL 71 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREe---Q~AR~lkLFEedDdl 71 (79)
..++...++.+||||-|+.- +.....+.++++++.
T Consensus 207 ~~~i~~~~~~~ya~kv~~~p~~~~~~~~~~~~~~~~~~ 244 (465)
T PF03606_consen 207 FTLIAIAYVHRYAQKVKKDPSYSEVYEDDEAEEEEEEE 244 (465)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhhhHHhhhhcccc
Confidence 44555666778998877664 334445555554443
No 90
>PTZ00046 rifin; Provisional
Probab=75.67 E-value=2 Score=34.97 Aligned_cols=37 Identities=27% Similarity=0.482 Sum_probs=27.9
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKKKREEQYARLLK 63 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lk 63 (79)
+|+|++.||+.+|+-...=||-=.|.|+-+||-.||+
T Consensus 321 iiAIvVIVLIMvIIYLILRYRRKKKMkKKLQYiKLL~ 357 (358)
T PTZ00046 321 IVAIVVIVLIMVIIYLILRYRRKKKMKKKLQYIKLLE 357 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhc
Confidence 3455555555666666777899999999999999986
No 91
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=75.61 E-value=7.5 Score=26.18 Aligned_cols=14 Identities=7% Similarity=-0.223 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhHHH
Q 047723 42 SFFLFKLWQKKKRE 55 (79)
Q Consensus 42 ~~~lYK~WQKKKRE 55 (79)
++-.|.-++.+-++
T Consensus 22 ~~p~~~~~~~~a~~ 35 (134)
T TIGR01710 22 VAPKLFSQADKAKA 35 (134)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444333
No 92
>PRK11380 hypothetical protein; Provisional
Probab=75.39 E-value=3.9 Score=33.42 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047723 32 LLGLVAVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
++++.+++++++++|..-.|.||||++
T Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~~eq~~ 103 (353)
T PRK11380 77 CSFLYLLIMLGLIVRAGFKKAKKEQLR 103 (353)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 344457888899999999999999853
No 93
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=75.36 E-value=10 Score=24.28 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcchhhhh
Q 047723 37 AVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEV 73 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedDdle~ 73 (79)
++.+++.++||+--...|...+|-|.|=++-.+|.|.
T Consensus 26 ~ls~~~~~~~kf~v~~pRKk~YadFYknYD~~k~fe~ 62 (73)
T PF02937_consen 26 VLSLGVAAAYKFGVAEPRKKAYADFYKNYDPMKDFEE 62 (73)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHT--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHccChHHHHHH
Confidence 4445555567765556677789999999988887774
No 94
>PHA02088 hypothetical protein
Probab=75.10 E-value=6.5 Score=27.97 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=22.4
Q ss_pred EehhHHHHHHHHHHHHHHH-HHHHHhHHHHHHH
Q 047723 28 VGIILLGLVAVGLFSFFLF-KLWQKKKREEQYA 59 (79)
Q Consensus 28 VviIl~vlv~v~l~~~~lY-K~WQKKKREeQ~A 59 (79)
|++|+.+.++++.+.|-.| -.|+||-|-||.+
T Consensus 4 iifi~~~~~~liac~~s~wd~~w~~k~~~e~~~ 36 (125)
T PHA02088 4 IIFIAGLVLGLIACCFSTWDSRWRKKARNEQAK 36 (125)
T ss_pred EEEeHHHHHHHHHhhhHHhhHHHHHHHHHHHHH
Confidence 5566666666666666666 5798888888765
No 95
>PHA03240 envelope glycoprotein M; Provisional
Probab=74.87 E-value=2.9 Score=32.92 Aligned_cols=8 Identities=25% Similarity=0.746 Sum_probs=3.5
Q ss_pred HHHHHHhH
Q 047723 46 FKLWQKKK 53 (79)
Q Consensus 46 YK~WQKKK 53 (79)
|-+|+-+|
T Consensus 238 ~dKw~~~k 245 (258)
T PHA03240 238 FDKWDLHG 245 (258)
T ss_pred HHHHhhhc
Confidence 44444443
No 96
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=74.69 E-value=3.3 Score=31.34 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 047723 34 GLVAVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 34 vlv~v~l~~~~lYK~WQKKKREeQ 57 (79)
+++++.++..+.++.|.||+.||.
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~ 445 (452)
T PRK11273 422 GGSILAVILLIVVMIGEKRHHEEL 445 (452)
T ss_pred HHHHHHHHHHHHHhccccchHHHH
Confidence 334555666677888988887653
No 97
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=74.25 E-value=8.9 Score=25.58 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 047723 36 VAVGLFSFFLFKLW 49 (79)
Q Consensus 36 v~v~l~~~~lYK~W 49 (79)
+++++|.+.+|-.-
T Consensus 47 Vii~lFi~ll~~i~ 60 (84)
T PF06143_consen 47 VIIVLFILLLYNIN 60 (84)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 98
>TIGR01708 typeII_sec_gspH general secretion pathway protein H. This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=74.00 E-value=6.2 Score=26.12 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=9.1
Q ss_pred CceEehhHHHHHHHHHHHHHH
Q 047723 25 GAKVGIILLGLVAVGLFSFFL 45 (79)
Q Consensus 25 gv~VviIl~vlv~v~l~~~~l 45 (79)
|-.++=++++++++++++.+.
T Consensus 5 GFTLiEllvvlaIiail~~~~ 25 (143)
T TIGR01708 5 GFTLIELLVVLAIMGLVAAAA 25 (143)
T ss_pred cEEHHHHHHHHHHHHHHHHHH
Confidence 444444444554444443333
No 99
>PHA02898 virion envelope protein; Provisional
Probab=73.90 E-value=4.9 Score=27.49 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=21.7
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHh
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKK 52 (79)
.+-+++.++.++++++.++|+-|.|+
T Consensus 46 alSii~FIlgivl~lG~~ifs~y~r~ 71 (92)
T PHA02898 46 SISIISFILAIILILGIIFFKGYNMF 71 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34478888889999999999999975
No 100
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=72.68 E-value=12 Score=29.55 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=7.9
Q ss_pred HHHHHHHH-hHHHHHHHH
Q 047723 44 FLFKLWQK-KKREEQYAR 60 (79)
Q Consensus 44 ~lYK~WQK-KKREeQ~AR 60 (79)
+....|.| ||+||+..|
T Consensus 234 ~~~vr~krk~k~~eMEr~ 251 (278)
T PF06697_consen 234 AMLVRYKRKKKIEEMERR 251 (278)
T ss_pred HhhhhhhHHHHHHHHHHh
Confidence 34444544 455554443
No 101
>PF09402 MSC: Man1-Src1p-C-terminal domain; InterPro: IPR018996 This entry represents the Inner nuclear membrane proteins MAN1 (also known as LEM domain-containing protein 3) and LEM domain-containing protein 2 (or LEM protein 2). Emerin and MAN1 are LEM domain-containing integral membrane proteins of the vertebrate nuclear envelope []. MAN1 is an integral protein of the inner nuclear membrane which binds to chromatin associated proteins and plays a role in nuclear organisation. The C-terminal nulceoplasmic region forms a DNA binding winged helix and binds to Smad []. LEM protein 2 is an essential protein involved in chromosome segregation and cell division, probably via its interaction with lmn-1, the main component of nuclear lamina. Has some overlapping function with emr-1.; GO: 0005639 integral to nuclear inner membrane; PDB: 2CH0_A.
Probab=72.62 E-value=0.56 Score=35.18 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=3.6
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 047723 38 VGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 38 v~l~~~~lYK~WQKKKREeQ 57 (79)
++++.+++.++|++++++++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~ 247 (334)
T PF09402_consen 228 LLLLIKYIRYRYRKRREEKA 247 (334)
T ss_dssp ------------STHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444544444443
No 102
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=72.53 E-value=16 Score=22.14 Aligned_cols=12 Identities=8% Similarity=0.058 Sum_probs=4.9
Q ss_pred HHHHHHHHhHHH
Q 047723 44 FLFKLWQKKKRE 55 (79)
Q Consensus 44 ~lYK~WQKKKRE 55 (79)
+.|-.++-++..
T Consensus 19 ~v~~~~~~~~~~ 30 (85)
T TIGR02209 19 VVSAQHQTRQLN 30 (85)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 103
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=71.91 E-value=7 Score=28.08 Aligned_cols=15 Identities=40% Similarity=0.702 Sum_probs=6.4
Q ss_pred HHHhHHHHHHHHHHh
Q 047723 49 WQKKKREEQYARLLK 63 (79)
Q Consensus 49 WQKKKREeQ~AR~lk 63 (79)
||+|-|+.=|||.|.
T Consensus 87 W~eK~K~~~qa~~~e 101 (129)
T PF02060_consen 87 WQEKDKAYFQARVLE 101 (129)
T ss_dssp --S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 666655666666553
No 104
>PHA03049 IMV membrane protein; Provisional
Probab=71.81 E-value=4 Score=26.62 Aligned_cols=23 Identities=22% Similarity=0.596 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKK 53 (79)
+++++.++++.++++|-.+.||+
T Consensus 5 ~~l~iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 44555566777888999998876
No 105
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=70.74 E-value=18 Score=22.72 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=13.2
Q ss_pred HHHHHHHHH------HHhHHHHHHHHHH
Q 047723 41 FSFFLFKLW------QKKKREEQYARLL 62 (79)
Q Consensus 41 ~~~~lYK~W------QKKKREeQ~AR~l 62 (79)
+.++++.+| |+.+-+.+=-+.|
T Consensus 17 ~li~~~~~~~~~~~~~k~~~~k~i~~yL 44 (85)
T PF11337_consen 17 SLIIGIYYFFNGNPYQKHKAEKAIDWYL 44 (85)
T ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHHH
Confidence 356666777 6666555555555
No 106
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=70.37 E-value=4.1 Score=28.99 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH--HhHHH
Q 047723 30 IILLGLVAVGLFSFFLFKLWQ--KKKRE 55 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQ--KKKRE 55 (79)
+|+++ =.+.+++||+|++.+ ++|+.
T Consensus 84 ~imPl-YtiGI~~f~lY~l~Ki~~~k~~ 110 (152)
T PF15361_consen 84 QIMPL-YTIGIVLFILYTLFKIKKKKDS 110 (152)
T ss_pred hHhHH-HHHHHHHHHHHHHHHHHhcCCc
Confidence 44444 477778888888887 55543
No 107
>PHA03265 envelope glycoprotein D; Provisional
Probab=69.78 E-value=9.6 Score=31.77 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=34.0
Q ss_pred CCcccccccccCCCCceEehhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 047723 11 GKQSAAHHTSRSNTGAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 11 ~~k~~~~~~~~~~tgv~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ 57 (79)
++|..+..+.+.+.|++|...+.+|+++..+.+++|+-=..-++.+|
T Consensus 337 ~~~~~~s~~~~~~~g~~ig~~i~glv~vg~il~~~~rr~k~~~k~~~ 383 (402)
T PHA03265 337 TKPPPTSKSNSTFVGISVGLGIAGLVLVGVILYVCLRRKKELKKSAQ 383 (402)
T ss_pred cCCCCCCCCCCcccceEEccchhhhhhhhHHHHHHhhhhhhhhhhhh
Confidence 33444444888899999999999999888888888875544333333
No 108
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=69.44 E-value=8.4 Score=23.13 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 047723 37 AVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKRE 55 (79)
+++++....+...++|+||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~ 29 (121)
T PF02687_consen 11 AIFILFNIISSSIRERRRE 29 (121)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444
No 109
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=69.40 E-value=9.4 Score=28.79 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=6.5
Q ss_pred ehhHHHHHHHHHH
Q 047723 29 GIILLGLVAVGLF 41 (79)
Q Consensus 29 viIl~vlv~v~l~ 41 (79)
.+||+++|+++++
T Consensus 32 ~tILiaIvVliii 44 (189)
T PF05568_consen 32 YTILIAIVVLIII 44 (189)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555544443
No 110
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=68.81 E-value=6.7 Score=35.03 Aligned_cols=16 Identities=13% Similarity=0.600 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhH
Q 047723 37 AVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKK 53 (79)
+.++++++||+ |||-+
T Consensus 404 va~ii~~~L~R-~rr~~ 419 (807)
T KOG1094|consen 404 VALIIALMLWR-WRRLL 419 (807)
T ss_pred HHHHHHHHHHH-HHHHH
Confidence 44445667777 77654
No 111
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=68.55 E-value=6.4 Score=30.41 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q 047723 37 AVGLFSFFLFKLWQ 50 (79)
Q Consensus 37 ~v~l~~~~lYK~WQ 50 (79)
+++|+.+++.|+|+
T Consensus 51 ILVI~i~v~vR~CR 64 (221)
T PF08374_consen 51 ILVIFIVVLVRYCR 64 (221)
T ss_pred HHHHHHHHHHHHHh
Confidence 55566666778776
No 112
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=68.36 E-value=15 Score=29.87 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=15.2
Q ss_pred cCCCCceEehhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047723 21 RSNTGAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 21 ~~~tgv~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
++++|+.+.+|.+++++.+ +-++| ||+..+..+|+
T Consensus 32 ~~~~g~~l~~~aili~la~--g~g~y-~~~~qq~~~~~ 66 (390)
T PRK10920 32 KNRTGLVLSAVAIAIALAA--GAGLY-YHGKQQAQNQT 66 (390)
T ss_pred CCCccHHHHHHHHHHHHHH--hhHHH-HHHHHHHHHHH
Confidence 3446655444444443322 22334 55544443333
No 113
>PRK10574 putative major pilin subunit; Provisional
Probab=68.07 E-value=15 Score=25.86 Aligned_cols=18 Identities=6% Similarity=0.139 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 047723 37 AVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKR 54 (79)
+++.+++-.|.-|++|-+
T Consensus 21 ILaaiaiP~~~~~~~~a~ 38 (146)
T PRK10574 21 ILSAIGIPAYQNYLQKAA 38 (146)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444555544433
No 114
>PHA03048 IMV membrane protein; Provisional
Probab=68.02 E-value=6.8 Score=26.85 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=21.2
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHh
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKK 52 (79)
.+-+++.++.++++++.++|+-|.|+
T Consensus 45 alsii~FIlgivl~lG~~ifsmy~r~ 70 (93)
T PHA03048 45 ALSGIAFVLGIVMTIGMLIYSMWGRY 70 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44577788888999999999999864
No 115
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=67.96 E-value=7.6 Score=26.17 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=18.1
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcch
Q 047723 29 GIILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDD 69 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedD 69 (79)
..+++.++.++++-|.++|==| ||.++|.-+|.=..-+|
T Consensus 10 ~~ll~~vl~~~ifyFli~RPQr--Kr~K~~~~ml~sL~kGD 48 (97)
T COG1862 10 VLLLPLVLIFAIFYFLIIRPQR--KRMKEHQELLNSLKKGD 48 (97)
T ss_pred HHHHHHHHHHHHHHHhhcCHHH--HHHHHHHHHHHhccCCC
Confidence 3444445455556665655433 33344444444333333
No 116
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=67.27 E-value=7.8 Score=31.85 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhHH
Q 047723 38 VGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 38 v~l~~~~lYK~WQKKKR 54 (79)
+++++++++.+|+||+|
T Consensus 534 ~~~l~~G~~~~~~Rrr~ 550 (552)
T TIGR03521 534 LLLLLFGLSFTYIRKRK 550 (552)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44455556666777765
No 117
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=67.01 E-value=2.2 Score=33.32 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
+||+++.+++|++.++.=+|..||
T Consensus 4 ~iLIIvGaiaI~aLl~hGlwt~Rk 27 (284)
T TIGR02205 4 IILIIVGILAIAALLFHGLWTSRK 27 (284)
T ss_pred ehHHHHHHHHHHHHHHcccccccc
Confidence 355556667777777777787766
No 118
>PF04882 Peroxin-3: Peroxin-3; InterPro: IPR006966 Peroxin 3 (Pex3p), also known as Peroxisomal biogenesis factor 3, has been identified and characterised as a peroxisomal membrane protein in yeasts and mammals []. Two putative peroxisomal membrane-bound Pex3p homologues have also been found in Arabidopsis thaliana []. They possess a membrane peroxisomal targeting signal. Pex3p is an integral membrane protein of peroxisomes, exposing its N- and C-terminal parts to the cytosol []. Peroxin is involved in peroxisome biosynthesis and integrity; it assembles membrane vesicles before the matrix proteins are translocated. In humans, defects in PEX3 are the cause of peroxisome biogenesis disorders [], which include Zellweger syndrome (ZWS), neonatal adrenoleukodystrophy (NALD), infantile Refsum disease (IRD), and classical rhizomelic chondrodysplasia punctata (RCDP). These are peroxisomal disorders that are the result of proteins failing to be imported into the peroxisome.; GO: 0007031 peroxisome organization, 0005779 integral to peroxisomal membrane; PDB: 3MK4_A 3AJB_A.
Probab=66.95 E-value=3.8 Score=33.00 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 047723 37 AVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKRE 55 (79)
++++.+.++++|+++|=+|
T Consensus 20 ~v~g~~y~~~~y~~~kl~e 38 (432)
T PF04882_consen 20 GVVGGGYLLYQYAQKKLRE 38 (432)
T ss_dssp -------------------
T ss_pred ccccccccccccccccccc
Confidence 4455556689999988433
No 119
>PF12216 m04gp34like: Immune evasion protein; InterPro: IPR022022 The proteins in this family are related to the m04 encoded protein gp34 of pathogenic microorganisms such as Murid herpesvirus 1. m06 and m152 genes are expressed earlier in the intracellular replication phases of these microorganism' life cycles. They function to inhibit MHC-1 loading and export. gp34 is theorized to prevent immune reactions from NK cells which would ordinarily recognise and attack cells lacking MHC.
Probab=66.64 E-value=12 Score=29.10 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=9.9
Q ss_pred CCceEehhHHHHHHHHHHHHHHHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFK 47 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK 47 (79)
+++++++|++.+|++.++...+|.
T Consensus 233 ~~ai~v~vv~i~va~~~vL~y~Y~ 256 (272)
T PF12216_consen 233 VTAIVVIVVLIFVAAVIVLAYLYG 256 (272)
T ss_pred eEEEEeeehhHHHHHHHHhhhhcc
Confidence 444444444444433333333444
No 120
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=66.16 E-value=8.4 Score=22.75 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 047723 37 AVGLFSFFLFKLWQKKKREEQYAR 60 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~AR 60 (79)
+++.+++++|=+|.++|+.-+.|.
T Consensus 20 ~~~Figiv~wa~~p~~k~~f~eaa 43 (48)
T cd01324 20 ALFFLGVVVWAFRPGRKKAFDEAA 43 (48)
T ss_pred HHHHHHHHHHHhCCCcchhHHHHH
Confidence 355567789999977766555543
No 121
>PF06022 Cir_Bir_Yir: Plasmodium variant antigen protein Cir/Yir/Bir; InterPro: IPR006477 This group of sequences identifies a large paralogous family of variant antigens from several Plasmodium species (Plasmodium yoelii, Plasmodium berghei and Plasmodium chabaudi). It is not believed that there are any orthologs of this family in Plasmodium falciparum.
Probab=65.91 E-value=3.5 Score=31.82 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=23.3
Q ss_pred cccCCCCceEehhHHHHHHHHHHHHHHHH
Q 047723 19 TSRSNTGAKVGIILLGLVAVGLFSFFLFK 47 (79)
Q Consensus 19 ~~~~~tgv~VviIl~vlv~v~l~~~~lYK 47 (79)
+++|+.+-.++.|++.++++.+|.-|.||
T Consensus 252 sssssi~nkLi~vl~if~aI~iflGIaYK 280 (280)
T PF06022_consen 252 SSSSSIANKLIPVLSIFGAIPIFLGIAYK 280 (280)
T ss_pred ccccchhhhHHHHHHHHHHHHHHhheecC
Confidence 46666778888899999888888877876
No 122
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=65.84 E-value=14 Score=22.40 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHH
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKKR 54 (79)
-++++++.+.++++.+|..++..+|
T Consensus 47 ~~ll~~vg~gli~~gi~~~~~a~~~ 71 (73)
T PF06724_consen 47 RWLLGAVGLGLIGYGIWQFVKAVYR 71 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666667777778888877664
No 123
>PF11780 DUF3318: Protein of unknown function (DUF3318); InterPro: IPR021751 This is a bacterial family of uncharacterised proteins.
Probab=65.14 E-value=6.6 Score=27.89 Aligned_cols=18 Identities=28% Similarity=0.757 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 047723 37 AVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKR 54 (79)
+..+.+..+|+.||+.|.
T Consensus 109 a~Gla~~~~~riwq~~~~ 126 (146)
T PF11780_consen 109 AGGLAAWAAYRIWQQNRS 126 (146)
T ss_pred HHHHHHHHHHHHHHHccC
Confidence 444455669999999995
No 124
>PF13400 Tad: Putative Flp pilus-assembly TadE/G-like
Probab=64.99 E-value=11 Score=21.28 Aligned_cols=22 Identities=9% Similarity=-0.069 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 047723 37 AVGLFSFFLFKLWQKKKREEQYA 59 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~A 59 (79)
+++.+++=..+.++. |++.|.+
T Consensus 16 ~~~~~~id~~~~~~~-r~~lq~a 37 (48)
T PF13400_consen 16 LLIGLAIDVGRAYLA-RTRLQNA 37 (48)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHH
Confidence 344444434444444 4455543
No 125
>TIGR01947 rnfG electron transport complex, RnfABCDGE type, G subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=64.89 E-value=21 Score=25.50 Aligned_cols=19 Identities=11% Similarity=0.260 Sum_probs=13.5
Q ss_pred HHhHHHHHHHHHHhhhhcc
Q 047723 50 QKKKREEQYARLLKLFEED 68 (79)
Q Consensus 50 QKKKREeQ~AR~lkLFEed 68 (79)
++++++++++.+..+|.+.
T Consensus 27 ~~~~~~~~~~al~~vlp~~ 45 (186)
T TIGR01947 27 AEAEAKQQLEALKQVLPQG 45 (186)
T ss_pred HHHHHHHHHHHHHHhcCcc
Confidence 4556666666799999873
No 126
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=64.61 E-value=2.2 Score=33.55 Aligned_cols=32 Identities=3% Similarity=-0.012 Sum_probs=0.0
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
.+|..+++++++++++.++.-.|+|||.+...
T Consensus 148 T~IpaVVI~~iLLIA~iIa~icyrrkR~GK~~ 179 (290)
T PF05454_consen 148 TFIPAVVIAAILLIAGIIACICYRRKRKGKMS 179 (290)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 34445555557777788999999988877543
No 127
>PRK01741 cell division protein ZipA; Provisional
Probab=64.51 E-value=9.9 Score=30.81 Aligned_cols=29 Identities=24% Similarity=0.558 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
+|++.|+++++++.+++-.|-.|+...||
T Consensus 5 ~iliILg~lal~~Lv~hgiWsnRrEKSqy 33 (332)
T PRK01741 5 TILIILGILALVALVAHGIWSNRREKSQY 33 (332)
T ss_pred ehHHHHHHHHHHHHHHhhhhhhhhHHHHh
Confidence 45566667777777888889877655554
No 128
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=64.44 E-value=25 Score=20.13 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 047723 36 VAVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 36 v~v~l~~~~lYK~WQKKKREeQ 57 (79)
.++++++.+++-.|++|+-..+
T Consensus 14 t~~~l~~l~~~~~~~~r~~~~~ 35 (46)
T PF04995_consen 14 TALVLAGLIVWSLRRRRRLRKE 35 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666654433
No 129
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=64.33 E-value=12 Score=29.13 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 047723 35 LVAVGLFSFFL 45 (79)
Q Consensus 35 lv~v~l~~~~l 45 (79)
++++++++++|
T Consensus 137 IAVLfLICT~L 147 (227)
T PF05399_consen 137 IAVLFLICTLL 147 (227)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 130
>TIGR02596 Verrucomicrobium spinosum paralogous family TIGR02596. This model describes a nearly twenty member protein family unique to Verrucomicrobium spinosum. All members share a type IV pilin-like N-terminal leader sequence (TIGR02532). Sequences are from 207 to 248 in length. The function is unknown.
Probab=63.98 E-value=14 Score=27.53 Aligned_cols=29 Identities=7% Similarity=-0.058 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKKREEQYA 59 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKKREeQ~A 59 (79)
++..+++++.+++..|.-|.+++|-++.|
T Consensus 9 VLaIiaILaaia~P~l~~~~~~~~L~~~a 37 (195)
T TIGR02596 9 VIAIIAVLMALSTPVVNQVLAAQQLGSSA 37 (195)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333455555666666666555544444
No 131
>PRK08808 general secretion pathway protein J; Validated
Probab=63.79 E-value=16 Score=27.22 Aligned_cols=39 Identities=21% Similarity=0.048 Sum_probs=20.1
Q ss_pred CCceEehhHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFK----LWQKKKREEQYARLL 62 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK----~WQKKKREeQ~AR~l 62 (79)
.|-.++=++++++++++++.++|- +|++..|.+.++..+
T Consensus 7 ~GFTLiEllia~ai~~il~~~a~~s~~~~~~~~~r~~~~~~~~ 49 (211)
T PRK08808 7 AGFTLIEVLLATVLLVGGLALAFATLRSASAVSQRGEAIAQRS 49 (211)
T ss_pred CCeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 465555555555555444444443 555655555444433
No 132
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=63.64 E-value=3.1 Score=28.63 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=19.6
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 047723 28 VGIILLGLVAVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 28 VviIl~vlv~v~l~~~~lYK~WQKKKREeQ 57 (79)
++|++++++++++++..+|-++.++..|..
T Consensus 6 ~~i~~i~l~~l~~~g~~~~~~~~~~~~~~~ 35 (142)
T PRK07718 6 IKIMLIILIVIALIGTAALVLVMGFSEAKK 35 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence 345555666677777778888887655544
No 133
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=63.30 E-value=10 Score=24.09 Aligned_cols=18 Identities=17% Similarity=0.421 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047723 34 GLVAVGLFSFFLFKLWQK 51 (79)
Q Consensus 34 vlv~v~l~~~~lYK~WQK 51 (79)
.++..+.+++++|-+|+|
T Consensus 74 ~~~~~~f~~~v~yI~~rR 91 (92)
T PF03908_consen 74 FFAFLFFLLVVLYILWRR 91 (92)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 344555567778888875
No 134
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=63.21 E-value=8 Score=27.78 Aligned_cols=43 Identities=26% Similarity=0.557 Sum_probs=30.3
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcchhhhh
Q 047723 29 GIILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEV 73 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedDdle~ 73 (79)
.+|++..|.+++++|++|-.-|-.-+-.|-.| +|--|+-|+|+
T Consensus 66 glii~LivSLaLVsFvIFLiiQTgnkMddvSr--RL~aEgKdIde 108 (128)
T PF15145_consen 66 GLIIVLIVSLALVSFVIFLIIQTGNKMDDVSR--RLTAEGKDIDE 108 (128)
T ss_pred HHHHHHHHHHHHHHHHHHheeeccchHHHHHH--HHHhccCCHHH
Confidence 33444445778889999999998877777776 34567777764
No 135
>PHA02650 hypothetical protein; Provisional
Probab=63.20 E-value=6.3 Score=26.41 Aligned_cols=25 Identities=40% Similarity=0.764 Sum_probs=10.4
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKL 48 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~ 48 (79)
+...+++++..+++++++.|.-.|.
T Consensus 48 ~~~~~ii~i~~v~i~~l~~flYLK~ 72 (81)
T PHA02650 48 NGQNFIFLIFSLIIVALFSFFVFKG 72 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433333444444433343
No 136
>PF15055 DUF4536: Domain of unknown function (DUF4536)
Probab=62.83 E-value=6.6 Score=23.71 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 047723 39 GLFSFFLFKLWQKKKREE 56 (79)
Q Consensus 39 ~l~~~~lYK~WQKKKREe 56 (79)
.+++..+|=+||.|||-.
T Consensus 12 GLig~G~Yv~~~ark~~k 29 (47)
T PF15055_consen 12 GLIGAGAYVYAQARKRMK 29 (47)
T ss_pred chHHHHHHHHHHHhhccc
Confidence 346677899999999843
No 137
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=62.61 E-value=16 Score=23.31 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 047723 32 LLGLVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQKK 52 (79)
++++++.++++||+-+++=+|
T Consensus 4 ilali~G~~~Gff~ar~~~~k 24 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARKYMEK 24 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555444
No 138
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=62.49 E-value=21 Score=29.58 Aligned_cols=11 Identities=27% Similarity=0.256 Sum_probs=4.9
Q ss_pred HHHHHHHHhhh
Q 047723 55 EEQYARLLKLF 65 (79)
Q Consensus 55 EeQ~AR~lkLF 65 (79)
.+-..|-.+|+
T Consensus 28 ~~Le~~k~~l~ 38 (560)
T PF06160_consen 28 DELEERKNELM 38 (560)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 139
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=62.17 E-value=10 Score=25.90 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=20.4
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHH
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQK 51 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQK 51 (79)
.+-+++.++.+++++++++|..|++
T Consensus 47 alSii~FIlG~vl~lGilifs~y~~ 71 (91)
T PHA02680 47 ALSVTCFIVGAVLLLGLFVFSMYRK 71 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3447788888888889999999984
No 140
>PRK10847 hypothetical protein; Provisional
Probab=62.07 E-value=11 Score=27.25 Aligned_cols=15 Identities=13% Similarity=0.465 Sum_probs=9.5
Q ss_pred HHHHHHHHHhHHHHH
Q 047723 43 FFLFKLWQKKKREEQ 57 (79)
Q Consensus 43 ~~lYK~WQKKKREeQ 57 (79)
.++..+|||++|...
T Consensus 202 ~~~~~~~r~~~~~~~ 216 (219)
T PRK10847 202 PGVIEIWRHKRAAAR 216 (219)
T ss_pred HHHHHHHHHHhhhhh
Confidence 344668888876544
No 141
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=61.86 E-value=6.5 Score=20.44 Aligned_cols=10 Identities=30% Similarity=0.112 Sum_probs=4.9
Q ss_pred HHHHHHHHhH
Q 047723 44 FLFKLWQKKK 53 (79)
Q Consensus 44 ~lYK~WQKKK 53 (79)
.+|-+++|||
T Consensus 24 ~~~~~~~rk~ 33 (34)
T TIGR01167 24 GGLLLRKRKK 33 (34)
T ss_pred HHHHheeccc
Confidence 4444455554
No 142
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=61.32 E-value=35 Score=24.24 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=8.6
Q ss_pred HHHHHHHHhhhhcchhhhhh
Q 047723 55 EEQYARLLKLFEEDDELEVE 74 (79)
Q Consensus 55 EeQ~AR~lkLFEedDdle~E 74 (79)
..+|.+|++ -.++.++|+-
T Consensus 29 ~r~Y~~lm~-g~~~~~lE~~ 47 (151)
T PF14584_consen 29 KRRYDALMR-GKDGKNLEDL 47 (151)
T ss_pred HHHHHHHhC-CCCcccHHHH
Confidence 334555543 3344455543
No 143
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=60.93 E-value=14 Score=27.20 Aligned_cols=13 Identities=15% Similarity=0.187 Sum_probs=7.0
Q ss_pred CCceEehhHHHHH
Q 047723 24 TGAKVGIILLGLV 36 (79)
Q Consensus 24 tgv~VviIl~vlv 36 (79)
+||.|++|+...+
T Consensus 9 sGv~vvlv~a~g~ 21 (186)
T PF07406_consen 9 SGVNVVLVIAYGS 21 (186)
T ss_pred cceeeehhhHHHH
Confidence 5666655554443
No 144
>PF06864 PAP_PilO: Pilin accessory protein (PilO); InterPro: IPR009663 This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body []. This family does not seem to be related to IPR007445 from INTERPRO.
Probab=60.49 E-value=13 Score=29.39 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=27.1
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQYARL 61 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~ 61 (79)
....++.++++++++++.++-.|..+|+++|.+..+|-
T Consensus 164 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~a~~~~ 201 (414)
T PF06864_consen 164 RQLVLAAALVVLALAGGYGWWYWQAQQEEARRAAAAAA 201 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 33455566777777788899999999877776554443
No 145
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=60.44 E-value=18 Score=25.37 Aligned_cols=19 Identities=16% Similarity=0.030 Sum_probs=7.6
Q ss_pred EehhHHHHHHHHHHHHHHH
Q 047723 28 VGIILLGLVAVGLFSFFLF 46 (79)
Q Consensus 28 VviIl~vlv~v~l~~~~lY 46 (79)
++||+++++++++++.+.|
T Consensus 21 iiii~~~~lll~~~g~~~~ 39 (170)
T PRK05696 21 IIIIVIGVLLALGGGGAAW 39 (170)
T ss_pred EeeHHHHHHHHHHHHHHHH
Confidence 3444444443333333444
No 146
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=60.12 E-value=10 Score=22.21 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHhH
Q 047723 37 AVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKK 53 (79)
+++++.++.|-.-.||-
T Consensus 17 ~iiii~~~~YaCcykk~ 33 (38)
T PF02439_consen 17 AIIIICMFYYACCYKKH 33 (38)
T ss_pred HHHHHHHHHHHHHHccc
Confidence 55555565655544443
No 147
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=59.86 E-value=9.4 Score=27.89 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhhc
Q 047723 39 GLFSFFLFKLWQKKKREEQYARLLKLFEE 67 (79)
Q Consensus 39 ~l~~~~lYK~WQKKKREeQ~AR~lkLFEe 67 (79)
.+.-.+|=++|++ =-.+||+||.++|.+
T Consensus 72 ~~s~~vLG~~wr~-as~eQr~~F~~~F~~ 99 (211)
T PRK15117 72 YAGALVLGRYYKD-ATPAQREAYFAAFRE 99 (211)
T ss_pred HHHHHHhhhhhhh-CCHHHHHHHHHHHHH
Confidence 3445667789986 458999999999975
No 148
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=59.86 E-value=18 Score=27.74 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 047723 37 AVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKR 54 (79)
+++-.+..+|+++|+||.
T Consensus 163 a~vYa~lt~~~f~~rr~~ 180 (283)
T PF02076_consen 163 AAVYAILTLRRFIRRRKQ 180 (283)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444446778888888774
No 149
>PHA03054 IMV membrane protein; Provisional
Probab=59.71 E-value=9.5 Score=25.08 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=11.2
Q ss_pred CceEehhHHHHHHHHHHHHHHH
Q 047723 25 GAKVGIILLGLVAVGLFSFFLF 46 (79)
Q Consensus 25 gv~VviIl~vlv~v~l~~~~lY 46 (79)
+-..+|++++.++++++.+++|
T Consensus 47 ~~~~~ii~l~~v~~~~l~~flY 68 (72)
T PHA03054 47 GWYWLIIIFFIVLILLLLIYLY 68 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555
No 150
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=59.21 E-value=18 Score=29.80 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=9.8
Q ss_pred HHHHHHHhHHHHHHHHHHhhhh
Q 047723 45 LFKLWQKKKREEQYARLLKLFE 66 (79)
Q Consensus 45 lYK~WQKKKREeQ~AR~lkLFE 66 (79)
.|+.-..|+=++-.+|--+|+.
T Consensus 22 ~~rr~~~~~i~~Le~~k~~l~~ 43 (569)
T PRK04778 22 ILRKRNYKRIDELEERKQELEN 43 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333333444555555554
No 151
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=58.83 E-value=10 Score=23.46 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=11.8
Q ss_pred HHHHHhHHHHHHHHHHhhhh
Q 047723 47 KLWQKKKREEQYARLLKLFE 66 (79)
Q Consensus 47 K~WQKKKREeQ~AR~lkLFE 66 (79)
-|||+|+.|.+ +.=++-|.
T Consensus 7 eyW~~Ra~eA~-~~a~~aY~ 25 (56)
T PF04431_consen 7 EYWQKRAEEAR-KAALAAYV 25 (56)
T ss_pred HHHHHHHHHHH-HHHHHhcC
Confidence 48999995544 44444444
No 152
>PRK05346 Na(+)-translocating NADH-quinone reductase subunit C; Provisional
Probab=58.66 E-value=23 Score=27.14 Aligned_cols=42 Identities=14% Similarity=-0.031 Sum_probs=23.1
Q ss_pred CceEehhHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 047723 25 GAKVGIILLGLV--AVGLFSFFLFKLWQKKKREEQYARLLKLFE 66 (79)
Q Consensus 25 gv~VviIl~vlv--~v~l~~~~lYK~WQKKKREeQ~AR~lkLFE 66 (79)
.++++++++++| +++..++.|-..=+++|+-..|..+|....
T Consensus 11 ti~~a~~l~lVcs~~vs~~a~~Lk~~q~~N~~ld~~~nIL~aag 54 (256)
T PRK05346 11 TLIVVVVLCLVCSVIVAGAAVGLKPRQEENKLLDKQKNILAAAG 54 (256)
T ss_pred EEEEEeehHHHHHHHHHHHHHHhccHHHHhHHHHHHHHHHHHCC
Confidence 344555544444 334445555555555666666677777665
No 153
>PRK10574 putative major pilin subunit; Provisional
Probab=58.47 E-value=31 Score=24.22 Aligned_cols=41 Identities=10% Similarity=0.183 Sum_probs=33.0
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKL 64 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkL 64 (79)
.|..++=++++++++.+++.+++--||...+..+.+..+..
T Consensus 5 ~GFTLIELmIViaIigILaaiaiP~~~~~~~~a~~~~~~~~ 45 (146)
T PRK10574 5 RGFTLIELMVVIAIIAILSAIGIPAYQNYLQKAALTDMLQT 45 (146)
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777888889999999999999999988777776654
No 154
>PF11743 DUF3301: Protein of unknown function (DUF3301); InterPro: IPR021732 This family is conserved in Proteobacteria, but the function is not known.
Probab=58.34 E-value=29 Score=22.75 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 047723 37 AVGLFSFFLFKLWQKKKREEQYA 59 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~A 59 (79)
++++++++.|=+||-++-.|..-
T Consensus 4 ~llll~~~~~~~w~~~~~~E~A~ 26 (97)
T PF11743_consen 4 LLLLLALVGWFWWQSRRQRERAL 26 (97)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Confidence 34445666777888776544433
No 155
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=57.98 E-value=10 Score=23.65 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=19.6
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 29 GIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
.++++.+++..+.+|+.||..-+|+
T Consensus 7 G~~~~~~~I~~lIgfity~mfV~K~ 31 (53)
T PF13131_consen 7 GIILFTIFIFFLIGFITYKMFVKKA 31 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHhheecC
Confidence 3566777788888899999988776
No 156
>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]
Probab=57.59 E-value=12 Score=28.32 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=13.4
Q ss_pred cccccccCCCCceEehhHHHH
Q 047723 15 AAHHTSRSNTGAKVGIILLGL 35 (79)
Q Consensus 15 ~~~~~~~~~tgv~VviIl~vl 35 (79)
+++...+.++|+.|++.++++
T Consensus 214 ep~~~~rk~~g~~v~~fl~~~ 234 (250)
T COG2857 214 EPEKEERKRLGFKVMIFLVVF 234 (250)
T ss_pred CccHHHhhcCCeeehhHHHHH
Confidence 344445777998887766533
No 157
>PRK04335 cell division protein ZipA; Provisional
Probab=57.50 E-value=6.9 Score=31.25 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHhhh
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKK--REEQYARLLKLF 65 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKK--REeQ~AR~lkLF 65 (79)
+||+++.+++|++.++-=+|--|| +...+-|=+|=+
T Consensus 6 lvLiivGAlAI~ALL~HGlWtsrKe~~~~f~dkp~~~~ 43 (313)
T PRK04335 6 FVLIVVGALAIAALLFHGLWTSKKEGKSKFGDKPLGKL 43 (313)
T ss_pred ehHHHHHHHHHHHHHHhccccccccccchhccCcchhh
Confidence 567777788889998999998777 233334444444
No 158
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=57.23 E-value=32 Score=27.46 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhc
Q 047723 32 LLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEE 67 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEe 67 (79)
+..+..+.++..+++-..|.|..+.+|.|+++-+|+
T Consensus 10 ~~~~~~~~~~~~~~~p~~~~~~~~~~R~~~i~~ie~ 45 (285)
T PF01972_consen 10 FSLLFWLFFIFLFLQPVLQQRMLEAARLRLIREIEE 45 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455689999999999999999998875
No 159
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=57.04 E-value=13 Score=28.29 Aligned_cols=25 Identities=8% Similarity=0.360 Sum_probs=13.9
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 29 GIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
+++..|..+|+.+++++||+++.-|
T Consensus 202 v~l~iG~iIi~tLtYvGwRKYrgek 226 (232)
T PF09577_consen 202 VMLSIGGIIIATLTYVGWRKYRGEK 226 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666666665444
No 160
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=56.75 E-value=1.7 Score=34.90 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=19.4
Q ss_pred cCCCCceEehhHHHHHHHHHHHHHHHHHHHHh
Q 047723 21 RSNTGAKVGIILLGLVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 21 ~~~tgv~VviIl~vlv~v~l~~~~lYK~WQKK 52 (79)
.|+....+++++-++++++++++|+||+--++
T Consensus 273 ~s~~l~piil~IG~vl~i~~Ig~~ifK~~~~~ 304 (305)
T PF04639_consen 273 VSDSLLPIILIIGGVLLIVFIGYFIFKRLMNR 304 (305)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhheeeEeeccC
Confidence 33344555555555556666778888876554
No 161
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=56.71 E-value=12 Score=27.14 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhhc
Q 047723 39 GLFSFFLFKLWQKKKREEQYARLLKLFEE 67 (79)
Q Consensus 39 ~l~~~~lYK~WQKKKREeQ~AR~lkLFEe 67 (79)
.+.-++|=++|++=- ++|+++|.++|.+
T Consensus 68 ~mar~vLG~~W~~~s-~~Qr~~F~~~F~~ 95 (198)
T TIGR03481 68 AMARLTLGSSWTSLS-PEQRRRFIGAFRE 95 (198)
T ss_pred HHHHHHhhhhhhhCC-HHHHHHHHHHHHH
Confidence 334455668998855 8999999999975
No 162
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=56.62 E-value=47 Score=20.83 Aligned_cols=12 Identities=42% Similarity=0.476 Sum_probs=4.6
Q ss_pred HHhhhhcchhhh
Q 047723 61 LLKLFEEDDELE 72 (79)
Q Consensus 61 ~lkLFEedDdle 72 (79)
+-++..+-+.++
T Consensus 44 l~~l~~~~~~l~ 55 (97)
T PF04999_consen 44 LQQLEKEIDQLQ 55 (97)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 163
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=56.51 E-value=17 Score=24.53 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKKRE 55 (79)
-++..+++-.+...++|+|||||+.
T Consensus 128 ~~v~~~i~Y~l~~~~~~~~r~~r~~ 152 (154)
T PF09835_consen 128 GIVLGIISYFLVYFLVRKYRKRRRK 152 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555666677888877765
No 164
>PRK03427 cell division protein ZipA; Provisional
Probab=56.23 E-value=11 Score=30.38 Aligned_cols=24 Identities=21% Similarity=0.629 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
.||+++.+++|+++++--+|--||
T Consensus 7 LiLivvGAIAIiAlL~HGlWtsRK 30 (333)
T PRK03427 7 LILIIVGAIAIIALLVHGFWTSRK 30 (333)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccc
Confidence 467778889999999999997766
No 165
>PF10510 PIG-S: Phosphatidylinositol-glycan biosynthesis class S protein; InterPro: IPR019540 Phosphatidylinositol-glycan biosynthesis class S protein (PIG-S) is one of several key, core components of the glycosylphosphatidylinositol (GPI) trans-amidase complex that mediates GPI anchoring in the endoplasmic reticulum. Anchoring occurs when a protein's C-terminal GPI attachment signal peptide is replaced with a pre-assembled GPI []. Mammalian GPI transamidase consists of at least five components: Gaa1, Gpi8, PIG-S, PIG-T, and PIG-U, all five of which are required for its function. It is possible that Gaa1, Gpi8, PIG-S, and PIG-T form a tightly associated core that is only weakly associated with PIG-U. The exact function of PIG-S is unclear [].
Probab=56.18 E-value=10 Score=30.90 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=22.7
Q ss_pred CCCceEehhHHHHHHHHHHHHHHHHHHHHhHHH
Q 047723 23 NTGAKVGIILLGLVAVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 23 ~tgv~VviIl~vlv~v~l~~~~lYK~WQKKKRE 55 (79)
+..|-+=+.+++++.+++..+=.+|.|++||||
T Consensus 485 K~AVY~PLf~Pi~~pl~~~~~~~~k~~~~~rk~ 517 (517)
T PF10510_consen 485 KYAVYLPLFGPISVPLLLGLLKELKEWRKRRKE 517 (517)
T ss_pred eeEeeehhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344444455666666667777788999988875
No 166
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=56.00 E-value=13 Score=25.40 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=23.9
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHH
Q 047723 28 VGIILLGLVAVGLFSFFLFKLWQKK----KREEQYARL 61 (79)
Q Consensus 28 VviIl~vlv~v~l~~~~lYK~WQKK----KREeQ~AR~ 61 (79)
+-+++.++.++++++.++|.-|-|+ +.....+|+
T Consensus 47 lSii~FI~giil~lG~~i~s~ygr~C~~s~~~~~~~R~ 84 (92)
T PF05767_consen 47 LSIICFILGIILTLGIVIFSMYGRYCRPSSKVIDNGRY 84 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCccccc
Confidence 4467777778888999999999554 334444444
No 167
>PF08320 PIG-X: PIG-X / PBN1; InterPro: IPR013233 Mammalian PIG-X and yeast PBN1 are essential components of glycosylphosphatidylinositol-mannosyltransferase I []. These enzymes are involved in the transfer of sugar molecules.; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane
Probab=55.98 E-value=17 Score=26.14 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=20.6
Q ss_pred CceEehhHHHHHHHHHHHHHHHHHHHH
Q 047723 25 GAKVGIILLGLVAVGLFSFFLFKLWQK 51 (79)
Q Consensus 25 gv~VviIl~vlv~v~l~~~~lYK~WQK 51 (79)
....|-+...+++++.+..++|+.|++
T Consensus 181 ~~~~V~~~T~~~~~lg~~~i~~~l~~~ 207 (207)
T PF08320_consen 181 DYDFVEIGTLLVVLLGFIWILWKLFKH 207 (207)
T ss_pred hcCEEhHHHHHHHHHHHHHHHHHHhCC
Confidence 445666777777888888999999973
No 168
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=55.94 E-value=19 Score=29.54 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 047723 37 AVGLFSFFLFKLWQKKKREEQYARL 61 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~AR~ 61 (79)
++.++....|+.++.|||.+.++.-
T Consensus 448 ~~~~~v~~~~~~~~n~k~~~~~~~~ 472 (495)
T KOG2533|consen 448 IVLLLVILFYKERENKKRDKLLEED 472 (495)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 4444455566666667766655543
No 169
>PF13584 BatD: Oxygen tolerance
Probab=55.85 E-value=15 Score=28.87 Aligned_cols=8 Identities=25% Similarity=0.530 Sum_probs=3.4
Q ss_pred HHHHhHHH
Q 047723 48 LWQKKKRE 55 (79)
Q Consensus 48 ~WQKKKRE 55 (79)
+|+|++|.
T Consensus 446 ~~~~~~~~ 453 (484)
T PF13584_consen 446 RRKRRKRQ 453 (484)
T ss_pred HHHhhhhc
Confidence 34344443
No 170
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=55.42 E-value=33 Score=28.55 Aligned_cols=23 Identities=13% Similarity=-0.064 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKK 53 (79)
.+..+++.++++..+|-+||-.+
T Consensus 36 ~~~all~aLgLGagg~~f~QqQ~ 58 (391)
T COG2959 36 SLAALLLALGLGAGGYYFGQQQN 58 (391)
T ss_pred HHHHHHHHHHhchhHHHHHHHHH
Confidence 33334444555666888898655
No 171
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=55.24 E-value=40 Score=25.97 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=17.7
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKKKREE 56 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKKKREe 56 (79)
.+..+++++ .+.++.--++-|||-||-|+
T Consensus 195 wla~~Lm~~-G~fI~irsi~dY~rVKR~Er 223 (233)
T PF10176_consen 195 WLAYILMAF-GWFIFIRSIIDYWRVKRMER 223 (233)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344444443 34444555788999998776
No 172
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=55.05 E-value=27 Score=25.11 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=13.9
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHh
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKK 52 (79)
.+.|++++++++.+++..+|-+|-=+
T Consensus 17 ~~~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 17 SLWILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred eeehHHHHHHHHHHHHHHHHHHhhhc
Confidence 44444444545555555566666554
No 173
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=54.95 E-value=4.1 Score=28.83 Aligned_cols=26 Identities=15% Similarity=-0.201 Sum_probs=13.2
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 28 VGIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 28 VviIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
++||+++++++++++...|-+|..++
T Consensus 26 liii~~~~lll~~~g~g~~f~~~~~~ 51 (166)
T PRK12785 26 LIIIAAAAVLLLGGGGGGFFFFFSHG 51 (166)
T ss_pred EeeHHHHHHHHHhcchheEEEEEecC
Confidence 34444444444444455666676543
No 174
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=54.92 E-value=13 Score=29.69 Aligned_cols=20 Identities=10% Similarity=0.371 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 047723 33 LGLVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 33 ~vlv~v~l~~~~lYK~WQKK 52 (79)
+.+++++++++|+|+.|...
T Consensus 160 f~ii~l~vla~ivY~~~~~~ 179 (318)
T PF06682_consen 160 FWIIFLLVLAFIVYSLFLSC 179 (318)
T ss_pred hhHHHHHHHHHHHHHHHhcc
Confidence 33345666788899998753
No 175
>PF15106 TMEM156: TMEM156 protein family
Probab=54.85 E-value=23 Score=27.57 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 047723 34 GLVAVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 34 vlv~v~l~~~~lYK~WQKKKREeQ 57 (79)
.+|.+.++.+++||.-|-.+|-+-
T Consensus 183 llVfiflii~iI~KIle~hrrvqk 206 (226)
T PF15106_consen 183 LLVFIFLIILIIYKILEGHRRVQK 206 (226)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhH
Confidence 334555668889999887776543
No 176
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=54.84 E-value=18 Score=24.21 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 047723 37 AVGLFSFFLFKLWQKKKREEQYARLL 62 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~AR~l 62 (79)
+.+++.+..++.+++|++.....|++
T Consensus 69 ~p~~l~~~~~~~~~~~~~~~~~~~~~ 94 (171)
T PF13491_consen 69 LPLLLIVWGIRLFRRRSLRRRIRRWL 94 (171)
T ss_pred HHHHHHHHHHHHHHccCchhhHHHHH
Confidence 44555666788888887665544443
No 177
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=54.25 E-value=19 Score=22.74 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=8.7
Q ss_pred HHHHHHHhhhhcc
Q 047723 56 EQYARLLKLFEED 68 (79)
Q Consensus 56 eQ~AR~lkLFEed 68 (79)
+.-.|.+.|.|.|
T Consensus 46 qKLDrIIeLLEK~ 58 (58)
T PF13314_consen 46 QKLDRIIELLEKD 58 (58)
T ss_pred HHHHHHHHHHccC
Confidence 3446888887764
No 178
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=53.79 E-value=24 Score=27.67 Aligned_cols=24 Identities=13% Similarity=0.365 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKKR 54 (79)
+++++++..++.++++-.|+++++
T Consensus 234 ~~i~L~~~~i~l~~gw~~y~~~~k 257 (262)
T PF11884_consen 234 SMIALVLANILLVLGWSLYRWNQK 257 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444545544443
No 179
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=53.60 E-value=2.7 Score=26.64 Aligned_cols=25 Identities=12% Similarity=0.348 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKKRE 55 (79)
++.++++++++.++.+-.|+++++.
T Consensus 6 ~~~g~~~ll~~v~~~~~~~rr~~~~ 30 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIVCFRRCKYS 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHCCCTT----
T ss_pred HHHHHHHHHHhheeEEEEEeeEcCC
Confidence 3333333333333344455555533
No 180
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.50 E-value=12 Score=28.67 Aligned_cols=19 Identities=5% Similarity=0.350 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047723 32 LLGLVAVGLFSFFLFKLWQ 50 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQ 50 (79)
..++++|+++.+..|++|+
T Consensus 195 ~~G~i~~~v~~yl~~~wlr 213 (213)
T KOG3251|consen 195 YGGVILTLVIMYLFYRWLR 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3344455555565666664
No 181
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=53.43 E-value=66 Score=27.36 Aligned_cols=22 Identities=14% Similarity=-0.043 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKK 52 (79)
.+++++++++++..+|-.||+-
T Consensus 327 ~~~~l~~~~~~g~~~~~~~q~~ 348 (656)
T PRK06975 327 WFVVVVLACAAAVGGYALNRKV 348 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666677566753
No 182
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=53.38 E-value=15 Score=24.53 Aligned_cols=18 Identities=6% Similarity=-0.003 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047723 34 GLVAVGLFSFFLFKLWQK 51 (79)
Q Consensus 34 vlv~v~l~~~~lYK~WQK 51 (79)
++++++++++++|..|++
T Consensus 11 ~v~~vv~~~~~~w~~~~~ 28 (112)
T PF14155_consen 11 AVLVVVAGAVVAWFGYSQ 28 (112)
T ss_pred HHHHHHHHHHHhHhhhhh
Confidence 344445555566677764
No 183
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=53.18 E-value=30 Score=24.06 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=4.8
Q ss_pred HHHHHHHHHHh
Q 047723 42 SFFLFKLWQKK 52 (79)
Q Consensus 42 ~~~lYK~WQKK 52 (79)
+...|-||-++
T Consensus 32 g~gg~~~~~~~ 42 (162)
T PRK07021 32 AGAGYSWWLSK 42 (162)
T ss_pred HHHHHHHHhhc
Confidence 33444445443
No 184
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=53.04 E-value=13 Score=25.76 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=20.3
Q ss_pred CCceEehhHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHH
Q 047723 24 TGAKVGIILLGLV-AVGLFSFFLFKLWQKKKREEQYARL 61 (79)
Q Consensus 24 tgv~VviIl~vlv-~v~l~~~~lYK~WQKKKREeQ~AR~ 61 (79)
--..|.|++.+++ .++|+..+=-..|.|--..=||-||
T Consensus 17 W~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~rL 55 (102)
T PF15176_consen 17 WPFLVGVVVTALVTSLLIALAAKCPVWYKYLASYRHHRL 55 (102)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccccccC
Confidence 4445555555554 2222333345678877666666665
No 185
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=52.84 E-value=12 Score=26.15 Aligned_cols=27 Identities=15% Similarity=0.436 Sum_probs=17.4
Q ss_pred eEehhHHHHH--HHHHHHHHHHHHHHHhH
Q 047723 27 KVGIILLGLV--AVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 27 ~VviIl~vlv--~v~l~~~~lYK~WQKKK 53 (79)
.|+++|++++ --+++++++|..|.++=
T Consensus 11 ~Ia~mVlGFi~fWPlGla~Lay~iw~~rm 39 (115)
T PF11014_consen 11 WIAAMVLGFIVFWPLGLALLAYMIWGKRM 39 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444 44567888999999653
No 186
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=52.61 E-value=26 Score=25.49 Aligned_cols=28 Identities=25% Similarity=0.461 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 047723 32 LLGLVAVGLFSFFLFKLWQKKKREEQYA 59 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQKKKREeQ~A 59 (79)
+.++++..+.+..+|--||-|+|..++.
T Consensus 9 lm~~~vf~~~~~~~~lG~q~R~rR~~~~ 36 (175)
T PF13301_consen 9 LMGLLVFPVGGYAIYLGWQWRQRRLQEN 36 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccch
Confidence 3444556667778899999999988877
No 187
>PRK12705 hypothetical protein; Provisional
Probab=52.54 E-value=21 Score=29.99 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhH
Q 047723 39 GLFSFFLFKLWQKKK 53 (79)
Q Consensus 39 ~l~~~~lYK~WQKKK 53 (79)
.++.+++||+.|..|
T Consensus 19 ~~~~~~~~~~~~~~~ 33 (508)
T PRK12705 19 GVLVVLLKKRQRLAK 33 (508)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555666665555
No 188
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=52.21 E-value=17 Score=25.79 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhH
Q 047723 39 GLFSFFLFKLWQKKK 53 (79)
Q Consensus 39 ~l~~~~lYK~WQKKK 53 (79)
+++.|++++|++.|+
T Consensus 28 ~~l~~~~~~Y~r~r~ 42 (149)
T PF11694_consen 28 LVLIFFFIKYLRNRL 42 (149)
T ss_pred HHHHHHHHHHHHhcC
Confidence 334444555555554
No 189
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=52.17 E-value=21 Score=25.31 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhHH-HHHHHH
Q 047723 39 GLFSFFLFKLWQKKKR-EEQYAR 60 (79)
Q Consensus 39 ~l~~~~lYK~WQKKKR-EeQ~AR 60 (79)
+++++.+.+++|+|+| ++++.|
T Consensus 17 AG~G~AA~~~~krk~kK~~erer 39 (137)
T PF12868_consen 17 AGAGYAAHKYKKRKEKKKEERER 39 (137)
T ss_pred HHHHHHHHHHHHHHhhhhhhhcc
Confidence 3355667888877644 334443
No 190
>PHA02692 hypothetical protein; Provisional
Probab=52.07 E-value=11 Score=24.58 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=12.7
Q ss_pred CCceEehhHHHHHHHHHHHHHHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLF 46 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lY 46 (79)
....++++.++.++++++.+++|
T Consensus 44 ~~~~~ii~~~~~~~~~vll~flY 66 (70)
T PHA02692 44 PWTTVFLIGLIAAAIGVLLCFHY 66 (70)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444355566666666666
No 191
>PHA02844 putative transmembrane protein; Provisional
Probab=51.92 E-value=15 Score=24.23 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=10.5
Q ss_pred eEehhHHHHHHHHHHHHHHH
Q 047723 27 KVGIILLGLVAVGLFSFFLF 46 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lY 46 (79)
..+|++++.++|+++.+++|
T Consensus 49 ~~~ii~i~~v~~~~~~~flY 68 (75)
T PHA02844 49 KIWILTIIFVVFATFLTFLY 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555565
No 192
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=51.89 E-value=14 Score=28.81 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 047723 40 LFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 40 l~~~~lYK~WQKKKREeQ 57 (79)
++..+.|+.|+|+|+.|.
T Consensus 450 ~~~~~~~~~~~~~~~~~~ 467 (469)
T PRK11049 450 IALGLGYLFIGKKRAAEL 467 (469)
T ss_pred HHHHHHHHHHcccchhhh
Confidence 335667899988877654
No 193
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=51.81 E-value=4.5 Score=22.34 Aligned_cols=11 Identities=64% Similarity=0.755 Sum_probs=7.8
Q ss_pred hhhcchhhhhh
Q 047723 64 LFEEDDELEVE 74 (79)
Q Consensus 64 LFEedDdle~E 74 (79)
||..|||.|++
T Consensus 1 LFGSddEeed~ 11 (28)
T PF10587_consen 1 LFGSDDEEEDE 11 (28)
T ss_pred CCCCccccccH
Confidence 78888875554
No 194
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=51.77 E-value=8.9 Score=29.19 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=18.9
Q ss_pred ccCCCCceEehhHHHHHHHHHHHHHHHHHHHH
Q 047723 20 SRSNTGAKVGIILLGLVAVGLFSFFLFKLWQK 51 (79)
Q Consensus 20 ~~~~tgv~VviIl~vlv~v~l~~~~lYK~WQK 51 (79)
++.|.-+.++.++++++.+++..+++..++.+
T Consensus 239 Ggkn~~Lgi~ylvvg~i~~v~~i~~~~~~~~~ 270 (278)
T PF03381_consen 239 GGKNYFLGIAYLVVGGICLVLAIIFLIIHYFK 270 (278)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44455566777777776555555555555543
No 195
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=51.55 E-value=11 Score=22.17 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhH
Q 047723 37 AVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKK 53 (79)
++.+++++.+=+.+|-+
T Consensus 22 ~igm~~~~~~~F~~k~~ 38 (42)
T PF11346_consen 22 TIGMGVFFIRYFIRKMK 38 (42)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 44444554444444444
No 196
>TIGR01707 gspI general secretion pathway protein I. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.
Probab=51.49 E-value=38 Score=22.23 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKKRE 55 (79)
+++++++++++++.+++..+..-|.
T Consensus 7 vlvAlaI~ai~~~~~~~~~~~~~~~ 31 (101)
T TIGR01707 7 VLVALAIFAAAALALISSVGGQTNA 31 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666677666554443
No 197
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=51.02 E-value=20 Score=28.60 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhHHHHH
Q 047723 41 FSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 41 ~~~~lYK~WQKKKREeQ 57 (79)
++-|+|--|+++ |+.+
T Consensus 17 i~~il~~~~~r~-r~~~ 32 (293)
T PRK00269 17 IAGILFDGWRRM-RGGK 32 (293)
T ss_pred HHHHHHHHHHHH-hccc
Confidence 333577888888 5544
No 198
>KOG4764 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.98 E-value=5.5 Score=26.09 Aligned_cols=12 Identities=67% Similarity=0.911 Sum_probs=10.0
Q ss_pred Hhhhhcchhhhh
Q 047723 62 LKLFEEDDELEV 73 (79)
Q Consensus 62 lkLFEedDdle~ 73 (79)
|.||||||+.|+
T Consensus 10 ~~~lEeDDEFEe 21 (70)
T KOG4764|consen 10 LGLLEEDDEFEE 21 (70)
T ss_pred ccccccchhhhh
Confidence 679999998874
No 199
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=50.85 E-value=43 Score=23.48 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 047723 39 GLFSFFLFKLWQK 51 (79)
Q Consensus 39 ~l~~~~lYK~WQK 51 (79)
++.++..|++.|.
T Consensus 40 ~~~~~G~y~~~~~ 52 (130)
T PF06212_consen 40 GIMAYGFYKVGQG 52 (130)
T ss_pred HHHHHHHHHHHHH
Confidence 3344445555543
No 200
>PHA02819 hypothetical protein; Provisional
Probab=50.79 E-value=13 Score=24.38 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=10.3
Q ss_pred eEehhHHHHHHHHHHHHHHH
Q 047723 27 KVGIILLGLVAVGLFSFFLF 46 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lY 46 (79)
..+|++++.++++++.+++|
T Consensus 47 ~~~ii~l~~~~~~~~~~flY 66 (71)
T PHA02819 47 YYLIIGLVTIVFVIIFIIFY 66 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555
No 201
>PF07811 TadE: TadE-like protein; InterPro: IPR012495 The members of this family are similar to a region of the protein product of the bacterial tadE locus (Q9S4A6 from SWISSPROT). In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces []. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria []. All tad loci but TadA have putative transmembrane regions [], and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.
Probab=50.58 E-value=39 Score=18.09 Aligned_cols=29 Identities=10% Similarity=0.047 Sum_probs=16.5
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 047723 29 GIILLGLVAVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lYK~WQKKKREeQ 57 (79)
++++|++..++++.+-+..++..+..=++
T Consensus 8 alv~Pvl~~~~~~~~~~~~~~~~~~~~~~ 36 (43)
T PF07811_consen 8 ALVLPVLLLLLFGIVELGRMFYAQQVLQS 36 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666555555555555555554443
No 202
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=50.54 E-value=57 Score=21.01 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHH
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKKR 54 (79)
++++.++.++.-..+.++.+++++|
T Consensus 157 ~~~p~~~~~~~~~~i~~~~~~~~~~ 181 (257)
T PF00001_consen 157 FILPLIIILICYIRILRKLRRQRKR 181 (257)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccceeeeeeecccccccccccccc
Confidence 3334444444445666677777663
No 203
>PRK10772 cell division protein FtsL; Provisional
Probab=50.48 E-value=32 Score=23.61 Aligned_cols=43 Identities=21% Similarity=0.156 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcchhhhhhhC
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEVELG 76 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedDdle~ELG 76 (79)
+++++++++-.++++...+.-|+ ..+.+=++..+-|.+|.|-|
T Consensus 27 l~Ll~~vv~SAl~VV~~~h~tR~----l~~ele~l~~e~~~Le~Ew~ 69 (108)
T PRK10772 27 LCLFIAVIVSAVTVVTTAHHTRL----LTAEREQLVLERDALDIEWR 69 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455444444433 24444455556667776643
No 204
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=50.35 E-value=12 Score=25.35 Aligned_cols=9 Identities=33% Similarity=0.818 Sum_probs=4.0
Q ss_pred HHHHHhHHH
Q 047723 47 KLWQKKKRE 55 (79)
Q Consensus 47 K~WQKKKRE 55 (79)
-.|+.+||.
T Consensus 20 ~~wr~~~rq 28 (107)
T PF15330_consen 20 LAWRMKQRQ 28 (107)
T ss_pred HHHHHHhhh
Confidence 344444443
No 205
>PTZ00270 variable surface protein Vir32; Provisional
Probab=50.03 E-value=11 Score=29.43 Aligned_cols=27 Identities=41% Similarity=0.544 Sum_probs=22.5
Q ss_pred CCCCceEehhHHHHHHHHHHHHHHHHH
Q 047723 22 SNTGAKVGIILLGLVAVGLFSFFLFKL 48 (79)
Q Consensus 22 ~~tgv~VviIl~vlv~v~l~~~~lYK~ 48 (79)
+.+...+.-|++|+|+..+.+++|||+
T Consensus 265 ~~~~~~~g~~~lGvv~t~~tsgalYr~ 291 (333)
T PTZ00270 265 TNPVTKSGNVLLGVVATSMTSGALYKF 291 (333)
T ss_pred CCcchhccceehhhhhhhhhhhhheec
Confidence 345567778999999999999999997
No 206
>PF05422 SIN1: Stress-activated map kinase interacting protein 1 (SIN1); InterPro: IPR008828 This family consists of several stress-activated map kinase interacting protein 1 (MAPKAP1 OR SIN1) sequences. The Schizosaccharomyces pombe Sty1/Spc1 mitogen-activated protein (MAP) kinase is a member of the eukaryotic stress-activated MAP kinase (SAPK) family. Sin1 interacts with Sty1/Spc1. Cells lacking Sin1 display many, but not all, of the phenotypes of cells lacking the Sty1/Spc1 MAP kinase including sterility, multiple stress sensitivity and a cell-cycle delay. Sin1 is phosphorylated after stress but this is not Sty1/Spc1-dependent [].; PDB: 3VOQ_B.
Probab=49.76 E-value=5.4 Score=33.56 Aligned_cols=40 Identities=13% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHH----HHHHHHHhhhhcchhhhhhhC
Q 047723 37 AVGLFSFFLFKLWQKKKRE----EQYARLLKLFEEDDELEVELG 76 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKRE----eQ~AR~lkLFEedDdle~ELG 76 (79)
+-=++++++|+||..+..- --..--|.+.|||.|.|+.++
T Consensus 232 V~e~IGl~L~~Y~~e~~~p~L~~~v~~~~Lrm~EdDGEvD~DFP 275 (523)
T PF05422_consen 232 VEEVIGLILWQYSEEGREPPLKENVNRYCLRMVEDDGEVDDDFP 275 (523)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHhccCCCccCChhhEEEEEeccCCCcCCCCC
Confidence 4446688899999754311 223456889999999887764
No 207
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=49.31 E-value=30 Score=23.42 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047723 33 LGLVAVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 33 ~vlv~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
+.|++.+++.++.|+--|+++++.+.
T Consensus 9 llLll~l~asl~~wr~~~rq~k~~~~ 34 (107)
T PF15330_consen 9 LLLLLSLAASLLAWRMKQRQKKAGQY 34 (107)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCC
Confidence 33446677788999999999988776
No 208
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=49.15 E-value=3 Score=34.03 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=12.4
Q ss_pred CCCceEehhHHHHH----HHHHHHHHHHHHHHH
Q 047723 23 NTGAKVGIILLGLV----AVGLFSFFLFKLWQK 51 (79)
Q Consensus 23 ~tgv~VviIl~vlv----~v~l~~~~lYK~WQK 51 (79)
+.++.+++|+...+ ++++.++.-||.|+.
T Consensus 195 ~d~l~lv~Iv~~cvaG~aAliva~~cW~Rlqr~ 227 (341)
T PF06809_consen 195 GDGLTLVLIVVCCVAGAAALIVAGYCWYRLQRE 227 (341)
T ss_pred CCCeeeehhHHHHHHHHHHHHHhhheEEEeccc
Confidence 34444444444333 333334444555433
No 209
>PRK12661 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=48.56 E-value=28 Score=24.76 Aligned_cols=27 Identities=11% Similarity=0.442 Sum_probs=20.0
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
++-.|+.+++..+++....||.||+..
T Consensus 102 vLTAIVIG~a~tA~~LaL~~r~y~~~g 128 (140)
T PRK12661 102 VLTAIVIGLATTAFILILAYRIYEEYG 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334566677788888888999998764
No 210
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=48.19 E-value=18 Score=28.89 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=10.7
Q ss_pred HHHHHhhhhcchhhhhhhC
Q 047723 58 YARLLKLFEEDDELEVELG 76 (79)
Q Consensus 58 ~AR~lkLFEedDdle~ELG 76 (79)
+.|+|.-||+-+-+-.+||
T Consensus 99 ek~~iee~e~~~q~~e~~~ 117 (279)
T PF07271_consen 99 EKRMIEEKEEHEQLAEQLG 117 (279)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4466666666555554444
No 211
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=48.18 E-value=13 Score=29.19 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=24.8
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHhHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKKKR 54 (79)
.....+|++++..++.+++-.+|+.+||+|.
T Consensus 230 l~~~~~i~L~~~~i~l~~gw~~y~~~~krre 260 (262)
T PF11884_consen 230 LLRISMIALVLANILLVLGWSLYRWNQKRRE 260 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3346677778888888888999999999984
No 212
>PRK08126 hypothetical protein; Provisional
Probab=47.99 E-value=34 Score=27.91 Aligned_cols=40 Identities=15% Similarity=0.034 Sum_probs=29.9
Q ss_pred CceEehhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 047723 25 GAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKL 64 (79)
Q Consensus 25 gv~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkL 64 (79)
.+.+-++..+++++++++|+.|++|-..+.+.-.+++..+
T Consensus 242 ~~P~W~~~~~~~l~l~~~y~~~~~~L~~~s~~v~~qi~~L 281 (432)
T PRK08126 242 DVPVWATAAVLSLILLGLFGWYKYRLLTRSADVQQRIAAI 281 (432)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 4566667777777888889999999888877766666555
No 213
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=47.84 E-value=44 Score=27.60 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 047723 37 AVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
+++++++++|-+|-+|+--.+=
T Consensus 10 ~ii~i~~~~~~~~~rr~~~~~i 31 (569)
T PRK04778 10 VVIIIIAYLAGLILRKRNYKRI 31 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455567788887744443
No 214
>PRK10580 proY putative proline-specific permease; Provisional
Probab=47.60 E-value=11 Score=29.28 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 047723 37 AVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ 57 (79)
++.++.++.|+.|+|.+|+..
T Consensus 434 ~~~~~~~~~y~~~~~~~~~~~ 454 (457)
T PRK10580 434 AWIVLLLIGWMFKRRHDRQLA 454 (457)
T ss_pred HHHHHHHHHHHHHhcccCCcc
Confidence 445567788999988777654
No 215
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=47.43 E-value=38 Score=31.67 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=21.9
Q ss_pred eEehhHHHHH---HHHHHHHHHHHHHH-HhHHHHHHHHHHhhh
Q 047723 27 KVGIILLGLV---AVGLFSFFLFKLWQ-KKKREEQYARLLKLF 65 (79)
Q Consensus 27 ~VviIl~vlv---~v~l~~~~lYK~WQ-KKKREeQ~AR~lkLF 65 (79)
..++++++.+ ++.++.|++|-.|| .+.+-.-+.|+|.+=
T Consensus 629 ~~~~~viG~~Ll~~~~~~~~~~~~~~r~q~~~k~~~rr~lq~~ 671 (1177)
T KOG1025|consen 629 ATAIAVIGGLLLAFFVFLGFSLYMCRRMQIIIKRTMRRLLQLE 671 (1177)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHhc
Confidence 3444444433 44445677777777 445555666777654
No 216
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=47.27 E-value=46 Score=21.86 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=19.8
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLW 49 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~W 49 (79)
..-.-.++++++++++.+.+++|=.+
T Consensus 57 ~~~~~~iili~lls~v~IlVily~Iy 82 (101)
T PF06024_consen 57 KQNNGNIILISLLSFVCILVILYAIY 82 (101)
T ss_pred ccccccchHHHHHHHHHHHHHHhhhe
Confidence 45567888888888888888887543
No 217
>PRK12658 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=47.10 E-value=30 Score=24.19 Aligned_cols=28 Identities=11% Similarity=0.312 Sum_probs=21.0
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHhHH
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKKKR 54 (79)
++--|+.++++.+++..+.||.||+..-
T Consensus 77 vLTAIVIg~a~tA~~L~L~~r~~~~~gt 104 (125)
T PRK12658 77 ILTAIVIGFGLLAFLLVLAYRAYQDLGT 104 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445666677788888889999998764
No 218
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=47.06 E-value=28 Score=19.98 Aligned_cols=10 Identities=0% Similarity=0.428 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 047723 42 SFFLFKLWQK 51 (79)
Q Consensus 42 ~~~lYK~WQK 51 (79)
++.++-+|++
T Consensus 12 t~lI~dyfr~ 21 (35)
T PF08763_consen 12 TLLIQDYFRQ 21 (35)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444555544
No 219
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=46.22 E-value=54 Score=23.58 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=13.7
Q ss_pred ehhHHHHHHHHHHHHHHHHH
Q 047723 29 GIILLGLVAVGLFSFFLFKL 48 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lYK~ 48 (79)
++|++++++++++.+++|-+
T Consensus 1 ~~ii~~i~~~~vG~~~G~~~ 20 (201)
T PF12072_consen 1 MIIIIAIVALIVGIGIGYLV 20 (201)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777766
No 220
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=46.21 E-value=6.7 Score=32.68 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHH
Q 047723 31 ILLGLVAVGLFSFF-LFKLWQKKKREEQYARL 61 (79)
Q Consensus 31 Il~vlv~v~l~~~~-lYK~WQKKKREeQ~AR~ 61 (79)
|+++++++.+++++ +|=+- ||+|...|++|
T Consensus 15 IcvaLlVVGi~Cvv~aYCKT-KKQRkklh~hL 45 (404)
T PF02158_consen 15 ICVALLVVGIVCVVDAYCKT-KKQRKKLHEHL 45 (404)
T ss_dssp --------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHh-HHHHHHHHHHH
Confidence 45555555556666 66443 33355555554
No 221
>PF11877 DUF3397: Protein of unknown function (DUF3397); InterPro: IPR024515 This family of bacterial proteins is currently functionally uncharacterised.
Probab=46.09 E-value=39 Score=22.43 Aligned_cols=12 Identities=33% Similarity=0.620 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhh
Q 047723 54 REEQYARLLKLF 65 (79)
Q Consensus 54 REeQ~AR~lkLF 65 (79)
+|-..-|++|.|
T Consensus 83 ~~i~~~k~~k~~ 94 (116)
T PF11877_consen 83 GEISYKKFFKKF 94 (116)
T ss_pred CcchhhHHHHHH
Confidence 367888998876
No 222
>PF06097 DUF945: Bacterial protein of unknown function (DUF945); InterPro: IPR010352 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.98 E-value=45 Score=25.45 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcchhh
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDEL 71 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedDdl 71 (79)
++++++++++++....-+|--+|=|++..+.+.-..+...+
T Consensus 6 ~~~~~v~~l~~~~~g~~~~~G~~~e~~~~~~~~~~n~~~~~ 46 (460)
T PF06097_consen 6 IALGVVVALVAAWLGAPWYTGKQAEQQYQQQVAQLNQQPGV 46 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCce
Confidence 33444444445555666777788888888777766654433
No 223
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=45.76 E-value=19 Score=23.61 Aligned_cols=18 Identities=28% Similarity=0.143 Sum_probs=7.6
Q ss_pred CCceEehhHHHHHHHHHH
Q 047723 24 TGAKVGIILLGLVAVGLF 41 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~ 41 (79)
++++.++|=++|+.|+++
T Consensus 29 ~~avaVviPl~L~LCiLv 46 (74)
T PF11857_consen 29 VNAVAVVIPLVLLLCILV 46 (74)
T ss_pred eeEEEEeHHHHHHHHHHH
Confidence 333334443444444444
No 224
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=45.64 E-value=6.9 Score=27.30 Aligned_cols=34 Identities=18% Similarity=0.002 Sum_probs=0.0
Q ss_pred ccCCCCceEehhHHHHH--HHHHHHHHHHHHHHHhH
Q 047723 20 SRSNTGAKVGIILLGLV--AVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 20 ~~~~tgv~VviIl~vlv--~v~l~~~~lYK~WQKKK 53 (79)
.+||+--..+.-+.+|+ .+++-++-+|-+||.|.
T Consensus 25 ~~s~sra~~vagltvLa~LLiAGQa~TaYfv~~Qk~ 60 (114)
T PF09307_consen 25 RGSCSRALKVAGLTVLACLLIAGQAVTAYFVFQQKG 60 (114)
T ss_dssp ------------------------------------
T ss_pred CCCccchhHHHHHHHHHHHHHHhHHHHHHHHHHhHh
Confidence 33433333333444444 44444888999998654
No 225
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=45.52 E-value=54 Score=23.30 Aligned_cols=14 Identities=50% Similarity=0.691 Sum_probs=7.6
Q ss_pred HHhhhhcchhhhhh
Q 047723 61 LLKLFEEDDELEVE 74 (79)
Q Consensus 61 ~lkLFEedDdle~E 74 (79)
+..+|.+=++++.+
T Consensus 48 l~~~~~~~~~~~~~ 61 (151)
T PF14584_consen 48 LNELFDQIDELKEE 61 (151)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566555555444
No 226
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=45.39 E-value=25 Score=24.82 Aligned_cols=12 Identities=0% Similarity=-0.161 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 047723 37 AVGLFSFFLFKL 48 (79)
Q Consensus 37 ~v~l~~~~lYK~ 48 (79)
+++++++++|..
T Consensus 128 ~ll~i~~giy~~ 139 (145)
T PF10661_consen 128 ILLAICGGIYVV 139 (145)
T ss_pred HHHHHHHHHHHH
Confidence 333334444443
No 227
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=45.14 E-value=26 Score=23.21 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 047723 33 LGLVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 33 ~vlv~v~l~~~~lYK~WQKK 52 (79)
+++-+|+++++-.|..||.-
T Consensus 23 va~P~v~l~~~n~y~~~~eh 42 (86)
T cd00925 23 VALPAVALCMLNAYLKHKEH 42 (86)
T ss_pred hHHHHHHHHHHHHHhhhhcc
Confidence 33346666677777788653
No 228
>PRK08388 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=45.03 E-value=32 Score=23.38 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=19.0
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhHH
Q 047723 28 VGIILLGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 28 VviIl~vlv~v~l~~~~lYK~WQKKKR 54 (79)
+-.|+.+++..+++..++++.||+++-
T Consensus 82 LTaIVI~~a~~A~~Lal~i~~yr~~gt 108 (119)
T PRK08388 82 LTSIVIGVCVLSLAMALTINAYRHYGT 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334555555777778889999998773
No 229
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=44.96 E-value=19 Score=27.27 Aligned_cols=27 Identities=19% Similarity=0.333 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047723 32 LLGLVAVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
.++++++++++++.+..|.++.|+.+.
T Consensus 232 ~i~~~~~~~~~~~~~~~~~~~~r~~~~ 258 (511)
T PF09972_consen 232 PILIVLGILLLLIFLIIWRKYGRDPKK 258 (511)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccc
Confidence 333345555555666777777766543
No 230
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=44.26 E-value=23 Score=27.73 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=16.2
Q ss_pred ehhHHHHH-HHHHHHHHHHHHHHHhHH
Q 047723 29 GIILLGLV-AVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 29 viIl~vlv-~v~l~~~~lYK~WQKKKR 54 (79)
+++.+.++ +++++.++.|++|..+||
T Consensus 208 iFLY~~l~a~~~l~l~~~~~~l~~~~k 234 (285)
T PF03896_consen 208 IFLYLFLAALGVLGLYFVYQFLPSSKK 234 (285)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55555454 455557778888876554
No 231
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=44.11 E-value=33 Score=24.54 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 047723 37 AVGLFSFFLFKLWQKK 52 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKK 52 (79)
++++++++++.||+||
T Consensus 185 iig~i~~~~~~~lkkk 200 (206)
T PF06570_consen 185 IIGVIAFALRFYLKKK 200 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556677778777776
No 232
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=43.97 E-value=61 Score=20.95 Aligned_cols=10 Identities=10% Similarity=0.378 Sum_probs=3.8
Q ss_pred HhHHHHHHHH
Q 047723 51 KKKREEQYAR 60 (79)
Q Consensus 51 KKKREeQ~AR 60 (79)
+|+++..+..
T Consensus 53 ~rr~~ka~~a 62 (108)
T PF07219_consen 53 RRRRRKAQRA 62 (108)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 233
>PRK11387 S-methylmethionine transporter; Provisional
Probab=43.89 E-value=21 Score=27.81 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhHH-HHHHHH
Q 047723 38 VGLFSFFLFKLWQKKKR-EEQYAR 60 (79)
Q Consensus 38 v~l~~~~lYK~WQKKKR-EeQ~AR 60 (79)
+++++++.|++|+|++| --|.||
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T PRK11387 444 FVALCYGAYYLTQRLKRNMTQEAR 467 (471)
T ss_pred HHHHHHHHHHHhccccccccHhhh
Confidence 34457778998876554 456666
No 234
>COG4726 PilX Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.61 E-value=58 Score=24.81 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=24.9
Q ss_pred ccCCCCceEehhHHHHHHHHHHHHHHHHHH
Q 047723 20 SRSNTGAKVGIILLGLVAVGLFSFFLFKLW 49 (79)
Q Consensus 20 ~~~~tgv~VviIl~vlv~v~l~~~~lYK~W 49 (79)
....-|..++|++++++++.++++..++.-
T Consensus 9 ~r~qRG~~LivvL~~LvvltLl~l~~~r~~ 38 (196)
T COG4726 9 SRRQRGFALIVVLMVLVVLTLLGLAAARSV 38 (196)
T ss_pred ccccCceEeHHHHHHHHHHHHHHHHHHHHH
Confidence 345578899999999999999988888865
No 235
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=43.47 E-value=61 Score=20.86 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhHH------HHHHHHHHhhhhcchhh
Q 047723 39 GLFSFFLFKLWQKKKR------EEQYARLLKLFEEDDEL 71 (79)
Q Consensus 39 ~l~~~~lYK~WQKKKR------EeQ~AR~lkLFEedDdl 71 (79)
.+...-++..+..|+| ++++.++-.|.+.-+-+
T Consensus 16 fVap~wl~lHY~~k~~~~~~ls~~d~~~L~~L~~~a~rm 54 (75)
T TIGR02976 16 FVAPLWLILHYRSKRKTAASLSTDDQALLQELYAKADRL 54 (75)
T ss_pred HHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 3344456666665443 33455555555444433
No 236
>PF12216 m04gp34like: Immune evasion protein; InterPro: IPR022022 The proteins in this family are related to the m04 encoded protein gp34 of pathogenic microorganisms such as Murid herpesvirus 1. m06 and m152 genes are expressed earlier in the intracellular replication phases of these microorganism' life cycles. They function to inhibit MHC-1 loading and export. gp34 is theorized to prevent immune reactions from NK cells which would ordinarily recognise and attack cells lacking MHC.
Probab=43.33 E-value=19 Score=28.04 Aligned_cols=49 Identities=10% Similarity=0.073 Sum_probs=29.9
Q ss_pred cccccccccCCCCceEehhHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHH
Q 047723 13 QSAAHHTSRSNTGAKVGIILLGLVAVGLFSFFLFKL-WQKKKREEQYARL 61 (79)
Q Consensus 13 k~~~~~~~~~~tgv~VviIl~vlv~v~l~~~~lYK~-WQKKKREeQ~AR~ 61 (79)
+...|....+|++..+++|.+.+++++++++++..| +...=++..++|+
T Consensus 218 ~~~~~~~~~~qt~~~~~ai~v~vv~i~va~~~vL~y~Y~~~l~rr~~s~~ 267 (272)
T PF12216_consen 218 SPTPPVDTSMQTSNNVTAIVVIVVLIFVAAVIVLAYLYGPSLCRRFSSRD 267 (272)
T ss_pred cCCCccccccccccceEEEEeeehhHHHHHHHHhhhhccHHHHHHHHHhh
Confidence 344453345678888888888887777776655544 4434444445554
No 237
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=43.23 E-value=18 Score=21.58 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=11.9
Q ss_pred EehhHHHHHHHHHHHHHHHH
Q 047723 28 VGIILLGLVAVGLFSFFLFK 47 (79)
Q Consensus 28 VviIl~vlv~v~l~~~~lYK 47 (79)
++++++.+.+++++.++.|-
T Consensus 2 ~~V~lL~~~~l~iGlmIGY~ 21 (47)
T PF11772_consen 2 LLVLLLAILALAIGLMIGYG 21 (47)
T ss_pred EeHHHHHHHHHHHHHHeeee
Confidence 34555555566666776664
No 238
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=43.17 E-value=10 Score=25.89 Aligned_cols=29 Identities=21% Similarity=0.380 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhhhc
Q 047723 38 VGLFSFFLFKLWQKKKREEQYARLLKLFEE 67 (79)
Q Consensus 38 v~l~~~~lYK~WQKKKREeQ~AR~lkLFEe 67 (79)
=.+.-++|=++|++-- ++||++|..+|.+
T Consensus 41 ~~~ar~~LG~~w~~~s-~~q~~~F~~~f~~ 69 (170)
T PF05494_consen 41 ERMARRVLGRYWRKAS-PAQRQRFVEAFKQ 69 (170)
T ss_dssp HHHHHHHHGGGTTTS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhCC-HHHHHHHHHHHHH
Confidence 3445566778898655 8899999999974
No 239
>TIGR00941 2a6301s03 Multicomponent Na+:H+ antiporter, MnhC subunit.
Probab=42.90 E-value=41 Score=22.80 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=19.3
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
.+--|+.+++..+++....||.||+..
T Consensus 73 vLTAIVIg~a~tA~~Lal~~r~~~~~g 99 (104)
T TIGR00941 73 ILTAIVIGFATTALFLVVALRAYQVAG 99 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333456666677788888999998753
No 240
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=42.80 E-value=35 Score=24.40 Aligned_cols=15 Identities=13% Similarity=0.523 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHH-HH
Q 047723 36 VAVGLFSFFLFKL-WQ 50 (79)
Q Consensus 36 v~v~l~~~~lYK~-WQ 50 (79)
+.++++.++++|+ |+
T Consensus 12 I~FlIll~ll~kfawk 27 (154)
T PRK06568 12 VSFVIFVYLIYRPAKK 27 (154)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 3444444456665 65
No 241
>PHA02975 hypothetical protein; Provisional
Probab=42.75 E-value=23 Score=23.08 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=10.3
Q ss_pred eEehhHHHHHHHHHHHHHHH
Q 047723 27 KVGIILLGLVAVGLFSFFLF 46 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lY 46 (79)
..+|+++..++++++.+++|
T Consensus 45 ~~~ii~i~~v~~~~~~~flY 64 (69)
T PHA02975 45 IILIIFIIFITCIAVFTFLY 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555565
No 242
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=42.42 E-value=26 Score=26.67 Aligned_cols=18 Identities=28% Similarity=0.698 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 047723 37 AVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKR 54 (79)
++.++.+++|.+||....
T Consensus 9 ~ls~~~~~~w~~~~~~~~ 26 (366)
T TIGR03593 9 ALSFVIFLLWQAWQSDPG 26 (366)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 445577889999998753
No 243
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.06 E-value=15 Score=24.21 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=15.2
Q ss_pred HHHHHHhhhhcchhhhhh
Q 047723 57 QYARLLKLFEEDDELEVE 74 (79)
Q Consensus 57 Q~AR~lkLFEedDdle~E 74 (79)
.-|+|-+||++-+++++.
T Consensus 15 ~dahF~rLfd~hn~LDd~ 32 (72)
T COG2841 15 NDAHFARLFDKHNELDDR 32 (72)
T ss_pred cchHHHHHHHHHhHHHHH
Confidence 358999999999988875
No 244
>PF04917 Shufflon_N: Bacterial shufflon protein, N-terminal constant region; InterPro: IPR007001 This domain represents the high-similarity N-terminal constant region shared by shufflon proteins. Shufflon proteins are created as a result of a clustered inversion region. The proteins retain a constant N-terminal domain, with different C-terminal domains.
Probab=41.96 E-value=57 Score=26.17 Aligned_cols=26 Identities=8% Similarity=-0.055 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhc
Q 047723 42 SFFLFKLWQKKKREEQYARLLKLFEE 67 (79)
Q Consensus 42 ~~~lYK~WQKKKREeQ~AR~lkLFEe 67 (79)
.+-.++-|++.++.++-|+=++-|.+
T Consensus 27 ~~~~~~~~~~~~~~~~aA~q~~~v~~ 52 (356)
T PF04917_consen 27 GAQWMSDYLEDQQWQVAAQQQSQVGE 52 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777777777776665543
No 245
>PRK07033 hypothetical protein; Provisional
Probab=41.95 E-value=45 Score=27.11 Aligned_cols=39 Identities=10% Similarity=0.191 Sum_probs=29.6
Q ss_pred ceEehhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 047723 26 AKVGIILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKL 64 (79)
Q Consensus 26 v~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkL 64 (79)
+.+-+++.+.+++++++++.|++|-..+-+.-.+++..|
T Consensus 228 vP~W~~~~~~~~ll~~~y~~~~~~L~~~a~~v~~~i~~l 266 (427)
T PRK07033 228 VPLWVCVALALLLALLLFIGLRWRLADRSDPVFAAIYAL 266 (427)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 445555556667777789999999999988877777666
No 246
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=41.69 E-value=24 Score=24.98 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=18.7
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 28 VGIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 28 VviIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
+.|..+.+++++++..+.-+.|-++|
T Consensus 17 ~~FA~L~i~~FiILLIi~~~IW~~~r 42 (121)
T PF10669_consen 17 MFFAFLFIVVFIILLIITKSIWHDSR 42 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44555666677777788889998765
No 247
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=41.65 E-value=12 Score=26.10 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=14.8
Q ss_pred CCCCceEehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 22 SNTGAKVGIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 22 ~~tgv~VviIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
.-+++++.++.-+++++++++|++-|.=+|..
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~ 96 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLRKKSS 96 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 33455555555555555555555555544443
No 248
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=41.40 E-value=41 Score=24.74 Aligned_cols=27 Identities=4% Similarity=0.155 Sum_probs=19.7
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
++--|++++++.+++..+.||.||...
T Consensus 77 VLTAIVIg~a~tA~~LaL~~r~y~~~g 103 (163)
T PRK07946 77 ILTAIVITMGITAFVLALAYRSYRLTT 103 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344566666677788888999999764
No 249
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=41.13 E-value=16 Score=25.83 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 047723 30 IILLGLVAVGLFSFFLFKLWQ 50 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQ 50 (79)
|+..++++|+++-+++-|.|+
T Consensus 125 i~g~ll~i~~giy~~~r~~~~ 145 (145)
T PF10661_consen 125 IGGILLAICGGIYVVLRKVWE 145 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 334556677777888888885
No 250
>PF06281 DUF1035: Protein of unknown function (DUF1035); InterPro: IPR009379 Sulfolobus virus-like particle SSV1 and its fusellovirus homologues can be found in many acidic (pH less than 4.0) hot springs (greater than 70 degrees C) around the world. SSV1 contains a 15.5-kb double-stranded DNA genome that encodes 34 proteins with greater than 50 amino acids []. A site-specific integrase and a DnaA-like protein have been previously identified by sequence homology, and three structural proteins have been isolated from purified virus and identified by N-terminal sequencing (VP1, VP2, and VP3).; GO: 0005198 structural molecule activity, 0016021 integral to membrane
Probab=41.13 E-value=7.1 Score=25.74 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=18.2
Q ss_pred ccccccCCCCce-EehhHHHHHHHHHHHHHHHHHHH
Q 047723 16 AHHTSRSNTGAK-VGIILLGLVAVGLFSFFLFKLWQ 50 (79)
Q Consensus 16 ~~~~~~~~tgv~-VviIl~vlv~v~l~~~~lYK~WQ 50 (79)
++..++||..+. ++=+.-.++.+++=++++||.++
T Consensus 36 P~yvGSsnA~iv~LVplFylLvlIiVPAvi~Yk~yk 71 (73)
T PF06281_consen 36 PQYVGSSNATIVSLVPLFYLLVLIIVPAVIAYKIYK 71 (73)
T ss_pred cceecCCCccHHHHHHHHHHHHHHHhhhheeeeeee
Confidence 444455544421 12222233455566999999764
No 251
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=41.02 E-value=40 Score=20.09 Aligned_cols=14 Identities=0% Similarity=0.247 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHh
Q 047723 39 GLFSFFLFKLWQKK 52 (79)
Q Consensus 39 ~l~~~~lYK~WQKK 52 (79)
+++....++|.+.+
T Consensus 58 ~~~~~~~~ry~~~~ 71 (73)
T PF02656_consen 58 LTLIYGIYRYRRRR 71 (73)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344455555544
No 252
>PTZ00045 apical membrane antigen 1; Provisional
Probab=40.96 E-value=23 Score=30.85 Aligned_cols=23 Identities=17% Similarity=0.691 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 047723 41 FSFFLFKLWQKKKREEQYARLLK 63 (79)
Q Consensus 41 ~~~~lYK~WQKKKREeQ~AR~lk 63 (79)
.+.+.|.+.+++.-...+-|+..
T Consensus 531 ~~~~~~~~~k~~~~~~~ydk~~~ 553 (595)
T PTZ00045 531 LAYFSYRYYRKKGNKDKYDKMDE 553 (595)
T ss_pred HHHHHHHHhhccCCcchhhhhhh
Confidence 33333444444444445555443
No 253
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.53 E-value=5.7 Score=30.75 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHhhhhc
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKK---REEQYARLLKLFEE 67 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKK---REeQ~AR~lkLFEe 67 (79)
+-+-+++++...+++.|.|||..+ -..+.---|||=.|
T Consensus 31 ~giailvVlGtag~~gy~yw~~s~as~sgd~flaAL~lA~~ 71 (221)
T COG4649 31 IGIAILVVLGTAGYVGYTYWQTSRASKSGDAFLAALKLAQE 71 (221)
T ss_pred HHHHHHHHhccccceeeehhcccccccchHHHHHHHHHHHc
Confidence 334444556666888999999754 34444445566544
No 254
>TIGR02889 spore_YpeB germination protein YpeB. Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function.
Probab=40.39 E-value=88 Score=25.82 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHH-----HHH-HHHhhhhcchhhhhhhC
Q 047723 36 VAVGLFSFFLFKLWQKKKREE-----QYA-RLLKLFEEDDELEVELG 76 (79)
Q Consensus 36 v~v~l~~~~lYK~WQKKKREe-----Q~A-R~lkLFEedDdle~ELG 76 (79)
+++++.++..|+-+|.|..=+ ||- -|-.|-..=|-++++||
T Consensus 10 ~~~v~~g~wgy~~~~ek~~~~~~~en~YqRaf~dL~~~vd~l~~~L~ 56 (435)
T TIGR02889 10 IAVVGLGAWGYLQTQEKNDLRNYLQAQYQRAFYELTYHVEQIEAQLG 56 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677888888776533 222 36667777788888886
No 255
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=39.95 E-value=1e+02 Score=20.18 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=13.0
Q ss_pred HHHHHHhH-HHHHHHHHHhh
Q 047723 46 FKLWQKKK-REEQYARLLKL 64 (79)
Q Consensus 46 YK~WQKKK-REeQ~AR~lkL 64 (79)
.+.|-++| ..++..+.++.
T Consensus 28 ~~~~l~~k~~~e~~~~~~~~ 47 (108)
T PF09682_consen 28 VIKYLKKKAGGEKLVKILEI 47 (108)
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 35588888 67777776664
No 256
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=39.89 E-value=22 Score=29.16 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=14.2
Q ss_pred ehhHHHHHHHHHHHH--HH-HHHHHHhHHHH
Q 047723 29 GIILLGLVAVGLFSF--FL-FKLWQKKKREE 56 (79)
Q Consensus 29 viIl~vlv~v~l~~~--~l-YK~WQKKKREe 56 (79)
+++++++++++++++ ++ --.|=|-+|+.
T Consensus 198 l~lv~Iv~~cvaG~aAliva~~cW~Rlqr~~ 228 (341)
T PF06809_consen 198 LTLVLIVVCCVAGAAALIVAGYCWYRLQREI 228 (341)
T ss_pred eeeehhHHHHHHHHHHHHHhhheEEEecccc
Confidence 355555556665422 22 23377766654
No 257
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=39.85 E-value=38 Score=21.11 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047723 32 LLGLVAVGLFSFFLFKLWQK 51 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQK 51 (79)
+++++.+++...++|-+|.+
T Consensus 22 ~~al~~l~~~isGl~l~~p~ 41 (88)
T PF13703_consen 22 ILALLLLLLLISGLYLWWPR 41 (88)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 33444455555566666643
No 258
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=39.80 E-value=52 Score=28.69 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 047723 37 AVGLFSFFLFKLWQKKKREEQYARLLKLFE 66 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~AR~lkLFE 66 (79)
++++++++++-+..|||- ++|+.||=|
T Consensus 9 lVilv~~~~~g~~lRkk~---~~rI~~LEe 35 (570)
T COG4477 9 LVILVAAYAVGYLLRKKN---YQRIDKLEE 35 (570)
T ss_pred HHHHHHHHHHHHHHHHhH---HHHHHHHHH
Confidence 334444455555555553 456666644
No 259
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=39.75 E-value=1e+02 Score=19.68 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 047723 39 GLFSFFLFKLWQK 51 (79)
Q Consensus 39 ~l~~~~lYK~WQK 51 (79)
+++....+-+|++
T Consensus 17 ~~~~~~~~~~~~~ 29 (148)
T PF12158_consen 17 VLLIGGIFLYWRR 29 (148)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444445544
No 260
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=39.61 E-value=59 Score=21.81 Aligned_cols=10 Identities=20% Similarity=0.012 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 047723 37 AVGLFSFFLF 46 (79)
Q Consensus 37 ~v~l~~~~lY 46 (79)
++++-.+.-.
T Consensus 20 ~i~~p~~~~~ 29 (134)
T TIGR01710 20 ALVAPKLFSQ 29 (134)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 261
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=39.41 E-value=64 Score=22.11 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=12.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHhh
Q 047723 43 FFLFKLWQKKKREEQYARLLKL 64 (79)
Q Consensus 43 ~~lYK~WQKKKREeQ~AR~lkL 64 (79)
|++|-++-=|....|+...-++
T Consensus 14 ~~i~yF~~iRPQkKr~K~~~~m 35 (109)
T PRK05886 14 MGGFMYFASRRQRKAMQATIDL 35 (109)
T ss_pred HHHHHHHHccHHHHHHHHHHHH
Confidence 3344466667766666655443
No 262
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=39.38 E-value=8.3 Score=28.24 Aligned_cols=12 Identities=0% Similarity=0.080 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 047723 37 AVGLFSFFLFKL 48 (79)
Q Consensus 37 ~v~l~~~~lYK~ 48 (79)
++++++.+.|-+
T Consensus 249 ~~~~~~~~~~~~ 260 (262)
T PF14257_consen 249 LILIIGLLVRFV 260 (262)
T ss_pred HHHHHHHHHheE
Confidence 333333333333
No 263
>PRK08600 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=39.17 E-value=50 Score=22.66 Aligned_cols=28 Identities=7% Similarity=0.285 Sum_probs=20.0
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHhHH
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKKKR 54 (79)
++--|+.+++..+++....+|.||+...
T Consensus 73 vLTaIVIg~a~tAl~L~l~~r~~~~~gt 100 (113)
T PRK08600 73 ILTAIVISFGVTAFFLVLAYRTYKELGT 100 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445666666777788888999987653
No 264
>PRK09094 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=39.15 E-value=50 Score=22.77 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=18.7
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
.+--|+.+++..+++..+.||.||+-.
T Consensus 77 vLTaIVIg~a~tA~~Lal~~r~y~~~g 103 (114)
T PRK09094 77 VLTAIVIGFAMTALFLVVALASRGLTG 103 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333456666677777888899997654
No 265
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=38.99 E-value=7.1 Score=29.52 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=17.6
Q ss_pred ceEehhHHHHHHHHHHHHHHHHH
Q 047723 26 AKVGIILLGLVAVGLFSFFLFKL 48 (79)
Q Consensus 26 v~VviIl~vlv~v~l~~~~lYK~ 48 (79)
++|.++|.+|+++++++++++|.
T Consensus 275 IaVG~~La~lvlivLiaYli~Rr 297 (306)
T PF01299_consen 275 IAVGAALAGLVLIVLIAYLIGRR 297 (306)
T ss_pred HHHHHHHHHHHHHHHHhheeEec
Confidence 46778888888888888777664
No 266
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=38.96 E-value=51 Score=24.80 Aligned_cols=30 Identities=20% Similarity=0.046 Sum_probs=20.6
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047723 29 GIILLGLVAVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
.|++.+++++++++++.|+--++-+..-+.
T Consensus 5 ~i~l~vi~il~ll~~~~yN~lv~~~~~v~~ 34 (185)
T COG1704 5 LIILAVIVILLLLAVGGYNGLVKLREAVKE 34 (185)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455555567777778899988887755433
No 267
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=38.76 E-value=82 Score=19.60 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 047723 33 LGLVAVGLFSFFLFKLWQKKKREEQYAR 60 (79)
Q Consensus 33 ~vlv~v~l~~~~lYK~WQKKKREeQ~AR 60 (79)
.++++-..+++++++.|+.+=-++-.+|
T Consensus 38 ~A~vis~~lS~~ll~~~R~~~~~~ia~~ 65 (69)
T PF14012_consen 38 LALVISMPLSYVLLRRLRDRASADIAAR 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455568888988877665544443
No 268
>TIGR01938 nqrC NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit. This model represents the NqrC subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=38.75 E-value=58 Score=25.06 Aligned_cols=41 Identities=10% Similarity=-0.026 Sum_probs=21.9
Q ss_pred ceEehhHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 047723 26 AKVGIILLGLV--AVGLFSFFLFKLWQKKKREEQYARLLKLFE 66 (79)
Q Consensus 26 v~VviIl~vlv--~v~l~~~~lYK~WQKKKREeQ~AR~lkLFE 66 (79)
++++++++++| +++..++.|--.=+++|+-..|..+|.-..
T Consensus 8 i~~a~~l~lVcs~~vs~aav~Lkp~Q~~N~~ldk~~nIL~aag 50 (251)
T TIGR01938 8 ILVILVLSLVCSVLLAGVAVSLKPTQEENALLDKQKQILAAAG 50 (251)
T ss_pred EEEEEehhHHHHHHHHHHHHHhcchHHHhHHHHHHHHHHHhCC
Confidence 44444444444 334445545445555666666666776554
No 269
>PRK01908 electron transport complex protein RnfG; Validated
Probab=38.73 E-value=55 Score=24.01 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=12.4
Q ss_pred HhHHHHHHHHHHhhhhcc
Q 047723 51 KKKREEQYARLLKLFEED 68 (79)
Q Consensus 51 KKKREeQ~AR~lkLFEed 68 (79)
+.+++++++.+.+.|-++
T Consensus 32 ~~~~~~~~~~l~~vlp~~ 49 (205)
T PRK01908 32 EQAALQQKALLDQVIPAE 49 (205)
T ss_pred HHHHHHHHHHHHHhcCCc
Confidence 455566667788888764
No 270
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=38.49 E-value=48 Score=24.24 Aligned_cols=16 Identities=25% Similarity=0.650 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 047723 37 AVGLFSFFLFKLWQKK 52 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKK 52 (79)
..++++||+||+.-|+
T Consensus 20 l~~IGGfFMFRKFLK~ 35 (141)
T PF11084_consen 20 LMAIGGFFMFRKFLKR 35 (141)
T ss_pred HHHHhHHHHHHHHHHh
Confidence 6778899999987665
No 271
>PF14163 SieB: Superinfection exclusion protein B
Probab=38.37 E-value=1.3e+02 Score=20.43 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHhhhhcchhhhh
Q 047723 32 LLGLVAVGLFSFFLFKLWQK----KKREEQYARLLKLFEEDDELEV 73 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQK----KKREeQ~AR~lkLFEedDdle~ 73 (79)
++.+++..+++-++.+.|+. .++...+++.-|-+..=|+.|.
T Consensus 39 ~fl~s~s~li~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~Lt~~Ek 84 (151)
T PF14163_consen 39 IFLFSVSYLIAQLLSFIYKEAKDRYQRKRKKKKIEKKLNSLTPEEK 84 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 33344666678888999999 4444555555666666666554
No 272
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=38.30 E-value=2.5 Score=34.42 Aligned_cols=24 Identities=42% Similarity=0.653 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
+|+++=+++++++.+.|-+|||||
T Consensus 350 ~ii~~N~v~lllg~~~~~~~rk~k 373 (374)
T TIGR03503 350 IIIVGNVVILLLGGIGFFVWRKKK 373 (374)
T ss_pred hhHhhhhhhhhhheeeEEEEEEee
Confidence 344455566666777888898886
No 273
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=38.25 E-value=11 Score=30.22 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=0.0
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
.|--|++|++++.+ +..||+=+|.-||-|.
T Consensus 231 LVPSiILVLLaVGG--LLfYr~rrRs~~e~q~ 260 (285)
T PF05337_consen 231 LVPSIILVLLAVGG--LLFYRRRRRSHREPQT 260 (285)
T ss_dssp --------------------------------
T ss_pred cccchhhhhhhccc--eeeecccccccccccc
Confidence 44444444444433 3335544444445443
No 274
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=38.09 E-value=84 Score=23.09 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=11.8
Q ss_pred HHHhhhhcchhhhhhh
Q 047723 60 RLLKLFEEDDELEVEL 75 (79)
Q Consensus 60 R~lkLFEedDdle~EL 75 (79)
|||++.-+-=|.|.|+
T Consensus 85 ~~l~~lrkn~eeEaei 100 (146)
T KOG3300|consen 85 RFLSELRKNLEEEAEI 100 (146)
T ss_pred HHHHHHHHhHHHHHHH
Confidence 6888877777777665
No 275
>PF09529 Intg_mem_TP0381: Integral membrane protein (intg_mem_TP0381); InterPro: IPR011737 This entry represents a family of hydrophobic proteins with seven predicted transmembrane alpha helices. Members are found in Bacillus subtilis (ywaF), TP0381 from Treponema pallidum (TP0381), Streptococcus pyogenes, Rhodococcus erythropolis, etc.
Probab=38.05 E-value=84 Score=22.32 Aligned_cols=10 Identities=10% Similarity=0.169 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 047723 41 FSFFLFKLWQ 50 (79)
Q Consensus 41 ~~~~lYK~WQ 50 (79)
++++++++.+
T Consensus 21 ~~~~l~~~~~ 30 (225)
T PF09529_consen 21 IIILLILYRR 30 (225)
T ss_pred HHHHHHHHHH
Confidence 3333444333
No 276
>PF08695 Coa1: Cytochrome oxidase complex assembly protein 1; InterPro: IPR014807 Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly. It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteristic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence []. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex [].
Probab=37.94 E-value=19 Score=23.20 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhhhcchhhhhhhC
Q 047723 40 LFSFFLFKLWQKKKREEQYARLLKLFEEDDELEVELG 76 (79)
Q Consensus 40 l~~~~lYK~WQKKKREeQ~AR~lkLFEedDdle~ELG 76 (79)
.++++.|.....++.-+-+..-|.-.+.+...-..||
T Consensus 10 ~~~~~~~~~~~~~~~s~~y~~al~~l~~~~~v~~~LG 46 (116)
T PF08695_consen 10 WGVFLFYAINSEKKSSEYYKEALEQLRSNPEVVEALG 46 (116)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhCHHHHHHcC
Confidence 3445556666666767777777777777777666666
No 277
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=37.41 E-value=43 Score=21.90 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 047723 37 AVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ 57 (79)
.......+.++.|+||+++..
T Consensus 133 ~~~~~~~~~i~~~~~~~~~a~ 153 (205)
T PF07695_consen 133 IILLILIIIIYAWRKGNRPAR 153 (205)
T ss_pred HHHHHHHHHHHHHHcCCccHH
Confidence 444455566777766665543
No 278
>COG1298 FlhA Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.35 E-value=32 Score=30.54 Aligned_cols=13 Identities=31% Similarity=0.753 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 047723 39 GLFSFFLFKLWQK 51 (79)
Q Consensus 39 ~l~~~~lYK~WQK 51 (79)
+++++..|+.|+.
T Consensus 314 ~~l~~~~~~~~~~ 326 (696)
T COG1298 314 GLLAFLAYLLSKR 326 (696)
T ss_pred HHHHHHHHHhhhc
Confidence 3445666666664
No 279
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.15 E-value=50 Score=24.61 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=14.1
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
++++|+.++.+ ++.+.++|-||+.+|
T Consensus 7 ~~i~ii~vifl-ai~~s~~~~~~~s~~ 32 (161)
T COG5353 7 IIIIIILVIFL-AIILSIALFFWKSMK 32 (161)
T ss_pred eeehhHHHHHH-HHHHHHHHHHhHhcC
Confidence 44444444433 333444677888776
No 280
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=37.14 E-value=51 Score=23.52 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047723 35 LVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 35 lv~v~l~~~~lYK~WQKK 52 (79)
++++++.++..+-.|+-+
T Consensus 10 vvvV~~~a~~g~~~~~~~ 27 (161)
T PF10969_consen 10 VVVVVAAAVVGVGWWQLR 27 (161)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 333344444455668753
No 281
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=37.11 E-value=22 Score=32.32 Aligned_cols=41 Identities=20% Similarity=0.150 Sum_probs=20.3
Q ss_pred CcCCCcccccccccCCCCceEehhHHHHHHHHHHHHHHHHH
Q 047723 8 TKKGKQSAAHHTSRSNTGAKVGIILLGLVAVGLFSFFLFKL 48 (79)
Q Consensus 8 ~~~~~k~~~~~~~~~~tgv~VviIl~vlv~v~l~~~~lYK~ 48 (79)
....+-+-+||.+--...+.||||++|...+.++++.+||.
T Consensus 811 ~sgh~la~shh~s~VpsaatvViVVcVgfLv~mvvlGv~ri 851 (952)
T KOG1834|consen 811 ISGHKLALSHHGSVVPSAATVVIVVCVGFLVFMVVLGVLRI 851 (952)
T ss_pred cccccccccccccccCcceEEEEEeehhHHHHHHHHhheee
Confidence 33445556775543333344555544444444455555654
No 282
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=37.05 E-value=28 Score=24.38 Aligned_cols=22 Identities=5% Similarity=0.046 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 047723 37 AVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
++++..+..|..-++.+..-+.
T Consensus 13 ~l~~~~~~~yN~L~~~~~~v~~ 34 (186)
T PF04011_consen 13 ILIVWFIMSYNSLVRLRNAVQE 34 (186)
T ss_dssp ------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444467776666544433
No 283
>PF14828 Amnionless: Amnionless
Probab=37.00 E-value=43 Score=27.43 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=8.8
Q ss_pred ccCCCCceEehhHHHHHHHHHH
Q 047723 20 SRSNTGAKVGIILLGLVAVGLF 41 (79)
Q Consensus 20 ~~~~tgv~VviIl~vlv~v~l~ 41 (79)
.++..+.++.+|+.++++++++
T Consensus 333 ~~~~~~~v~~~vl~~Lllv~ll 354 (437)
T PF14828_consen 333 PNVSFGTVVGIVLGCLLLVALL 354 (437)
T ss_pred CCcccceeeeehHHHHHHHHHH
Confidence 3343443444444333333333
No 284
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=36.97 E-value=44 Score=22.80 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=17.6
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKL 48 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~ 48 (79)
..-+||..+++|++.+++.|++--+
T Consensus 35 kysIVI~FWv~LA~FV~~lF~iL~~ 59 (90)
T PF15183_consen 35 KYSIVIAFWVSLAAFVVFLFLILLY 59 (90)
T ss_pred ceeeehhHHHHHHHHHHHHHHHHHH
Confidence 4458888889998777776655443
No 285
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=36.79 E-value=40 Score=23.43 Aligned_cols=14 Identities=14% Similarity=-0.080 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 047723 38 VGLFSFFLFKLWQK 51 (79)
Q Consensus 38 v~l~~~~lYK~WQK 51 (79)
.+++++++.+....
T Consensus 32 g~gg~~~~~~~~~~ 45 (162)
T PRK07021 32 AGAGYSWWLSKEQA 45 (162)
T ss_pred HHHHHHHHhhcccc
Confidence 34455555555443
No 286
>PRK07375 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=36.64 E-value=52 Score=21.98 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
.|+.+++..+++..++++.||+++
T Consensus 78 aIVI~~a~~A~~Lal~i~~yr~~g 101 (112)
T PRK07375 78 AIVIGFATTAVMLALIVKLYKDYG 101 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444445566777777888888776
No 287
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=36.49 E-value=81 Score=25.32 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 047723 32 LLGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQKKKR 54 (79)
+..++.++++.+..|..+|+.++
T Consensus 7 ~~l~~~~~~~~~~~~~~~~~~~~ 29 (660)
T PRK11829 7 VALVTICIFIILQLFHFVQQRKD 29 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333455556666777777775
No 288
>COG5232 SEC62 Preprotein translocase subunit Sec62 [Intracellular trafficking and secretion]
Probab=36.44 E-value=36 Score=26.94 Aligned_cols=29 Identities=24% Similarity=0.697 Sum_probs=21.5
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHhHHH
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKKKRE 55 (79)
....++++++++++++.++|..|-+.=|.
T Consensus 149 ~~~~~l~~~fvlv~lalVlfplWPr~mr~ 177 (259)
T COG5232 149 NISLVLCGVFVLVTLALVLFPLWPRNMRQ 177 (259)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCchHhhc
Confidence 34456667778888889999999876553
No 289
>COG3768 Predicted membrane protein [Function unknown]
Probab=36.42 E-value=99 Score=25.55 Aligned_cols=26 Identities=8% Similarity=0.024 Sum_probs=20.1
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhcch
Q 047723 44 FLFKLWQKKKREEQYARLLKLFEEDD 69 (79)
Q Consensus 44 ~lYK~WQKKKREeQ~AR~lkLFEedD 69 (79)
=.++.||=++|+..|++-..+..+++
T Consensus 119 Ew~rl~rL~~r~~lr~~a~~~~~~~~ 144 (350)
T COG3768 119 EWRRLVRLRQRQHLRDDARDALHSHG 144 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35788888999988888777776654
No 290
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Probab=36.38 E-value=45 Score=24.57 Aligned_cols=10 Identities=40% Similarity=0.494 Sum_probs=6.1
Q ss_pred HhHHHHHHHH
Q 047723 51 KKKREEQYAR 60 (79)
Q Consensus 51 KKKREeQ~AR 60 (79)
+|-|.-|+||
T Consensus 270 ~~~~~~~~~~ 279 (281)
T PRK10592 270 QRIRDIQRAR 279 (281)
T ss_pred HHHHHHHHhh
Confidence 3446667776
No 291
>PRK10506 hypothetical protein; Provisional
Probab=36.23 E-value=1.5e+02 Score=20.53 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=14.0
Q ss_pred eEehhHHHHHHHHHHHHHHHH
Q 047723 27 KVGIILLGLVAVGLFSFFLFK 47 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK 47 (79)
++++|+.+++++++..+.-|.
T Consensus 18 vvl~Ii~il~~~a~p~~~~~~ 38 (162)
T PRK10506 18 VVMTIVSILSAWGLYGWQRWQ 38 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777766654
No 292
>PF14719 PID_2: Phosphotyrosine interaction domain (PTB/PID)
Probab=36.23 E-value=35 Score=25.19 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=16.6
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 047723 43 FFLFKLWQKKKREEQYARL 61 (79)
Q Consensus 43 ~~lYK~WQKKKREeQ~AR~ 61 (79)
--+|--||+.||+.|++|+
T Consensus 120 ~~Af~~~kr~k~~~~~~~l 138 (182)
T PF14719_consen 120 RSAFQEFKRDKRSRQNARL 138 (182)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3468899999999999998
No 293
>PF07694 5TM-5TMR_LYT: 5TMR of 5TMR-LYT; InterPro: IPR011620 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the transmembrane region of the 5TM-Lyt (5TM Receptors of the LytS-YhcK type) histidine kinase []. The two-component regulatory system LytS/LytT probably regulates genes involved in cell wall metabolism. ; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0007047 cellular cell wall organization, 0016021 integral to membrane
Probab=36.21 E-value=77 Score=21.04 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHh
Q 047723 37 AVGLFSFFLFKLWQK--KKREEQYARLLK 63 (79)
Q Consensus 37 ~v~l~~~~lYK~WQK--KKREeQ~AR~lk 63 (79)
++.+++.+++|+|++ +|..-.++-++-
T Consensus 91 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 119 (169)
T PF07694_consen 91 LIGILAGLISRFFRRKSKKIKLLYLFLLS 119 (169)
T ss_pred HHHHHHHHHHHHHHhcchhccHHHHHHHH
Confidence 455566678889988 555555554433
No 294
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=36.13 E-value=38 Score=22.20 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKKRE 55 (79)
++.++....+++|+.+=.|+.+|++
T Consensus 53 ~lll~~~~~vg~f~g~vmik~~~kk 77 (78)
T PF07297_consen 53 FLLLLGLSGVGTFLGYVMIKSKKKK 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Confidence 3334446667788888888877653
No 295
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=36.01 E-value=1.1e+02 Score=20.79 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH-H
Q 047723 35 LVAVGLFSFFLFKL-W 49 (79)
Q Consensus 35 lv~v~l~~~~lYK~-W 49 (79)
++.++++.++++++ |
T Consensus 8 ~i~f~i~l~~l~~~~~ 23 (159)
T PRK09173 8 FVGLVLFLALVVYLKV 23 (159)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 33444455555554 6
No 296
>PF12923 RRP7: Ribosomal RNA-processing protein 7 (RRP7); InterPro: IPR024326 Ribosomal RNA-processing protein 7 (RRP7) is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly []. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [, ]. This entry includes RRP7 and homologous sequences from other organisms.
Probab=35.89 E-value=42 Score=22.91 Aligned_cols=25 Identities=32% Similarity=0.612 Sum_probs=20.3
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhcch
Q 047723 45 LFKLWQKKKREEQYARLLKLFEEDD 69 (79)
Q Consensus 45 lYK~WQKKKREeQ~AR~lkLFEedD 69 (79)
-|++=++-+|-++.+-|++=||||=
T Consensus 92 FYrFQ~RE~kk~~l~eLrkkFeeDK 116 (131)
T PF12923_consen 92 FYRFQIREKKKNELAELRKKFEEDK 116 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777778888899999999983
No 297
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=35.58 E-value=54 Score=21.68 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 047723 30 IILLGLVAVGLFSFFLFKL 48 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~ 48 (79)
+.+++++++.++++++|-.
T Consensus 95 ~~~~~~~~lp~~a~~lY~~ 113 (117)
T TIGR03142 95 AALVVVLLLPVLALGLYLK 113 (117)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444566667777753
No 298
>PRK01637 hypothetical protein; Reviewed
Probab=35.43 E-value=30 Score=25.79 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcchhh
Q 047723 37 AVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDEL 71 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedDdl 71 (79)
.+++++.-+-..+|+.|+.+|-+. =|||||.
T Consensus 254 ~ilL~Gaelna~~~~~~~~~~~~~----~~~~~~~ 284 (286)
T PRK01637 254 CIVLLGAEITATLGEYRKLKQAAE----QEEDDEP 284 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc----ccccccc
Confidence 333334444556677666665543 2566654
No 299
>PF11743 DUF3301: Protein of unknown function (DUF3301); InterPro: IPR021732 This family is conserved in Proteobacteria, but the function is not known.
Probab=35.10 E-value=1.1e+02 Score=19.92 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 047723 33 LGLVAVGLFSFFLFKLWQKKKREEQYARL 61 (79)
Q Consensus 33 ~vlv~v~l~~~~lYK~WQKKKREeQ~AR~ 61 (79)
+.+.++++++++-+.-.+.+-+..++||=
T Consensus 3 l~llll~~~~~~~w~~~~~~E~A~~~a~~ 31 (97)
T PF11743_consen 3 LLLLLLALVGWFWWQSRRQRERALQAARR 31 (97)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34455567778889999999999988873
No 300
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=35.10 E-value=2.2e+02 Score=23.24 Aligned_cols=18 Identities=17% Similarity=-0.119 Sum_probs=8.9
Q ss_pred cccCCCCceEehhHHHHH
Q 047723 19 TSRSNTGAKVGIILLGLV 36 (79)
Q Consensus 19 ~~~~~tgv~VviIl~vlv 36 (79)
..+.-.+.++++|+++++
T Consensus 34 ~~g~~l~~~aili~la~g 51 (390)
T PRK10920 34 RTGLVLSAVAIAIALAAG 51 (390)
T ss_pred CccHHHHHHHHHHHHHHh
Confidence 445545555555555444
No 301
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=35.04 E-value=48 Score=20.25 Aligned_cols=18 Identities=17% Similarity=-0.009 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047723 34 GLVAVGLFSFFLFKLWQK 51 (79)
Q Consensus 34 vlv~v~l~~~~lYK~WQK 51 (79)
++++++++...+-||=-+
T Consensus 11 iVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 11 IVLGVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHHHHhHHHHHHHhcc
Confidence 333555556666676655
No 302
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=34.85 E-value=48 Score=21.44 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 047723 37 AVGLFSFFLFKLWQKKKREE 56 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREe 56 (79)
.++-+.+=+|=++++-||+.
T Consensus 45 ~~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 45 GLLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred HHHHHHhHhhhhhhHhhhHh
Confidence 33333444444444444443
No 303
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=34.75 E-value=32 Score=31.19 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=13.5
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHH
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQ 50 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQ 50 (79)
+.+||+.+++.+++++.+.|=+|+
T Consensus 978 ~wiIi~svl~GLLlL~llv~~LwK 1001 (1030)
T KOG3637|consen 978 LWIIILSVLGGLLLLALLVLLLWK 1001 (1030)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555554
No 304
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=34.71 E-value=43 Score=24.38 Aligned_cols=18 Identities=39% Similarity=0.606 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047723 35 LVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 35 lv~v~l~~~~lYK~WQKK 52 (79)
+++.+++.++++||.+++
T Consensus 35 lvv~~lli~~~~kyr~r~ 52 (217)
T TIGR01432 35 FVVFVLFTIFLVKYRYRK 52 (217)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 334455566677776554
No 305
>PRK01741 cell division protein ZipA; Provisional
Probab=34.66 E-value=43 Score=27.24 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=23.9
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHhHH
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKKKR 54 (79)
++.|||-+++++++++..+|.-=+.|-|
T Consensus 5 ~iliILg~lal~~Lv~hgiWsnRrEKSq 32 (332)
T PRK01741 5 TILIILGILALVALVAHGIWSNRREKSQ 32 (332)
T ss_pred ehHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 5779999999999999999987777654
No 306
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=34.40 E-value=93 Score=19.12 Aligned_cols=21 Identities=24% Similarity=0.621 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQK 51 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQK 51 (79)
|++++.++.+|+.+..-.+||
T Consensus 8 iFsvvIil~If~~iGl~IyQk 28 (49)
T PF11044_consen 8 IFSVVIILGIFAWIGLSIYQK 28 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444554555555555455554
No 307
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=33.90 E-value=59 Score=26.19 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 047723 30 IILLGLVAVGLFSFFLFK 47 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK 47 (79)
|..+||.+++++..+||-
T Consensus 263 iaalvllil~vvliiLYi 280 (295)
T TIGR01478 263 IAALVLIILTVVLIILYI 280 (295)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555566666666664
No 308
>PRK10270 putative aminodeoxychorismate lyase; Provisional
Probab=33.85 E-value=40 Score=26.59 Aligned_cols=19 Identities=21% Similarity=0.058 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 047723 31 ILLGLVAVGLFSFFLFKLW 49 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~W 49 (79)
+++++++|+++++..|.+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (340)
T PRK10270 9 LLLLVVLGIAAGVGVWKVR 27 (340)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555443
No 309
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=33.67 E-value=87 Score=24.10 Aligned_cols=6 Identities=17% Similarity=0.396 Sum_probs=2.8
Q ss_pred HHHHhH
Q 047723 48 LWQKKK 53 (79)
Q Consensus 48 ~WQKKK 53 (79)
-|..++
T Consensus 74 ~~~~~r 79 (398)
T PRK10747 74 GWFVGR 79 (398)
T ss_pred HHHHHH
Confidence 454443
No 310
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=33.42 E-value=79 Score=25.04 Aligned_cols=9 Identities=0% Similarity=-0.145 Sum_probs=3.7
Q ss_pred HHHHHHHhH
Q 047723 45 LFKLWQKKK 53 (79)
Q Consensus 45 lYK~WQKKK 53 (79)
.++.|.+++
T Consensus 173 ~~~~~~~~~ 181 (571)
T TIGR02203 173 RVSKRLRRI 181 (571)
T ss_pred HHHHHHHHH
Confidence 344444443
No 311
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=33.36 E-value=5.3 Score=29.57 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=6.5
Q ss_pred HHHHHHHHHhH
Q 047723 43 FFLFKLWQKKK 53 (79)
Q Consensus 43 ~~lYK~WQKKK 53 (79)
|.|.|+-|||+
T Consensus 41 ftLPkflqRRs 51 (158)
T PF11770_consen 41 FTLPKFLQRRS 51 (158)
T ss_pred cchHHHHHhhh
Confidence 34566666654
No 312
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=33.15 E-value=90 Score=20.16 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=9.6
Q ss_pred HHHHHHHhhhhcchhhhh
Q 047723 56 EQYARLLKLFEEDDELEV 73 (79)
Q Consensus 56 eQ~AR~lkLFEedDdle~ 73 (79)
+++.++-.|.+.-+-+++
T Consensus 39 ~d~~~L~~L~~~a~rm~e 56 (75)
T PF06667_consen 39 EDEQRLQELYEQAERMEE 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355566666655544443
No 313
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=33.04 E-value=36 Score=21.97 Aligned_cols=10 Identities=30% Similarity=0.916 Sum_probs=5.0
Q ss_pred HHHHHHhHHH
Q 047723 46 FKLWQKKKRE 55 (79)
Q Consensus 46 YK~WQKKKRE 55 (79)
.+.||||.||
T Consensus 57 v~~~kr~~k~ 66 (66)
T PF10746_consen 57 VRDWKRKNKE 66 (66)
T ss_pred HHHHHHhcCC
Confidence 3455555543
No 314
>PRK15397 nicotinamide riboside transporter PnuC; Provisional
Probab=32.87 E-value=79 Score=23.83 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 047723 36 VAVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 36 v~v~l~~~~lYK~WQKKKRE 55 (79)
++..+.++..|..|+|..|+
T Consensus 212 ~vfli~ai~G~~~W~k~~~~ 231 (239)
T PRK15397 212 IILTFIALNGSRLWIKSARE 231 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36667788899999886654
No 315
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=32.84 E-value=73 Score=21.86 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHH
Q 047723 36 VAVGLFSFFLFKL 48 (79)
Q Consensus 36 v~v~l~~~~lYK~ 48 (79)
++..+++.++.++
T Consensus 24 ~~~~~~s~l~~~~ 36 (168)
T PF01956_consen 24 ILRGLISELLQKF 36 (168)
T ss_pred HHHHHHHHHHhcc
Confidence 3555566666665
No 316
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=32.83 E-value=1.2e+02 Score=23.68 Aligned_cols=11 Identities=27% Similarity=0.588 Sum_probs=5.1
Q ss_pred HHHHHHHHHhH
Q 047723 43 FFLFKLWQKKK 53 (79)
Q Consensus 43 ~~lYK~WQKKK 53 (79)
..+++.|++.+
T Consensus 39 ~~~~~~~~~~~ 49 (318)
T PF12725_consen 39 YYLIRLIRKIF 49 (318)
T ss_pred HHHHHHHHHHH
Confidence 33455555433
No 317
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=32.77 E-value=1e+02 Score=21.21 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=15.9
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhc
Q 047723 45 LFKLWQKKKREEQYARLLKLFEE 67 (79)
Q Consensus 45 lYK~WQKKKREeQ~AR~lkLFEe 67 (79)
+...|+++|+..+-+++-++.++
T Consensus 11 ~~~~~~~~~~~~~~~~l~~~~~~ 33 (230)
T PF00122_consen 11 IIEIWQEYRSKKQLKKLNNLNPQ 33 (230)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHhccCCC
Confidence 44778888877777777665544
No 318
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=32.58 E-value=1.5e+02 Score=23.85 Aligned_cols=17 Identities=18% Similarity=0.069 Sum_probs=9.5
Q ss_pred HHHHHHH-HhHHHHHHHH
Q 047723 44 FLFKLWQ-KKKREEQYAR 60 (79)
Q Consensus 44 ~lYK~WQ-KKKREeQ~AR 60 (79)
.+|.|-+ +|+|.++++|
T Consensus 89 g~~~Y~~~~k~~~~e~~r 106 (280)
T KOG2792|consen 89 GALAYLKKEKARLLEKER 106 (280)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 4566666 4555555555
No 319
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=32.48 E-value=93 Score=27.01 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 047723 37 AVGLFSFFLFK 47 (79)
Q Consensus 37 ~v~l~~~~lYK 47 (79)
++++.+|++||
T Consensus 169 ~lvi~~~~~~r 179 (534)
T KOG3653|consen 169 ALVILAFLGYR 179 (534)
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 320
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=32.47 E-value=36 Score=27.30 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 047723 37 AVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKR 54 (79)
++.+.++.+|++ .+|||
T Consensus 311 ~vl~~~~~~~~~-~~~~~ 327 (361)
T PF12259_consen 311 IVLISLAWLYRT-FRRRQ 327 (361)
T ss_pred HHHHHHHhheee-hHHHH
Confidence 333344445554 44443
No 321
>PTZ00370 STEVOR; Provisional
Probab=32.34 E-value=65 Score=25.96 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHHhHH
Q 047723 30 IILLGLVAVGLFSFFLFKL-WQKKKR 54 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~-WQKKKR 54 (79)
|..+||.+++++..+||-. ++|||+
T Consensus 259 iaalvllil~vvliilYiwlyrrRK~ 284 (296)
T PTZ00370 259 IAALVLLILAVVLIILYIWLYRRRKN 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4445555566666666642 334443
No 322
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.17 E-value=92 Score=18.16 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=6.3
Q ss_pred HHHHhhhhcchhhhhh
Q 047723 59 ARLLKLFEEDDELEVE 74 (79)
Q Consensus 59 AR~lkLFEedDdle~E 74 (79)
.++=++=.+-++++.|
T Consensus 31 ~~i~~l~~e~~~L~~e 46 (80)
T PF04977_consen 31 KEIEELKKENEELKEE 46 (80)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333343444444333
No 323
>PF07095 IgaA: Intracellular growth attenuator protein IgaA; InterPro: IPR010771 This family consists of several bacterial intracellular growth attenuator (IgaA) proteins. IgaA is involved in negative control of bacterial proliferation within fibroblasts. IgaA is homologous to the Escherichia coli YrfF and Proteus mirabilis UmoB proteins. Whereas the biological function of YrfF is currently unknown, UmoB has been shown elsewhere to act as a positive regulator of FlhDC, the master regulator of flagella and swarming. FlhDC has been shown to repress cell division during P. mirabilis swarming, suggesting that UmoB could repress cell division via FlhDC. This biological function, if maintained in Salmonella enterica, could sustain a putative negative control of cell division and growth exerted by IgaA in intracellular bacteria [].; GO: 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=32.09 E-value=28 Score=30.99 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=12.4
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHh
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKK 52 (79)
+|+|+...++++++++.++|..|+++
T Consensus 4 ~~iilail~~~li~~~~~~~~r~~r~ 29 (705)
T PF07095_consen 4 IVIILAILLACLIIAGSFLWFRMRRR 29 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 33343334444455555555555544
No 324
>PRK10249 phenylalanine transporter; Provisional
Probab=31.92 E-value=36 Score=26.59 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHh
Q 047723 38 VGLFSFFLFKLWQKK 52 (79)
Q Consensus 38 v~l~~~~lYK~WQKK 52 (79)
+.++.++.||.|+||
T Consensus 444 ~~~~~~~~~~~~~~~ 458 (458)
T PRK10249 444 WIVFLFVAFKTLRRK 458 (458)
T ss_pred HHHHHHHHHHheecC
Confidence 344466788888754
No 325
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=31.88 E-value=61 Score=23.85 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHhH
Q 047723 37 AVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKK 53 (79)
.++.++.+.||-||+.+
T Consensus 37 g~AalG~lA~~ayq~~q 53 (188)
T PF04391_consen 37 GLAALGGLAYKAYQNWQ 53 (188)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444455555555554
No 326
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=31.84 E-value=87 Score=21.06 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 047723 30 IILLGLVAVGLFSFFLFKLW 49 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~W 49 (79)
.+.+.+-.++++++|-|-.|
T Consensus 8 ~~~~ll~~vl~~~ifyFli~ 27 (97)
T COG1862 8 GLVLLLPLVLIFAIFYFLII 27 (97)
T ss_pred cHHHHHHHHHHHHHHHHhhc
Confidence 34444446666666655555
No 327
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=31.81 E-value=1.5e+02 Score=19.80 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047723 33 LGLVAVGLFSFFLFKLW 49 (79)
Q Consensus 33 ~vlv~v~l~~~~lYK~W 49 (79)
..++.++++.+++||+.
T Consensus 9 ~~~i~Flil~~il~~~~ 25 (156)
T PRK05759 9 GQLIAFLILVWFIMKFV 25 (156)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344445555565553
No 328
>PHA02902 putative IMV membrane protein; Provisional
Probab=31.78 E-value=76 Score=20.78 Aligned_cols=16 Identities=13% Similarity=0.511 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 047723 37 AVGLFSFFLFKLWQKK 52 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKK 52 (79)
++++++.++|-.++|-
T Consensus 12 ~v~Ivclliya~YrR~ 27 (70)
T PHA02902 12 IVIIFCLLIYAAYKRY 27 (70)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555666666666665
No 329
>PF01002 Flavi_NS2B: Flavivirus non-structural protein NS2B; InterPro: IPR000487 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. All, but two, are cleaved by the NS2B-NS3 protease complex [, ].; GO: 0004252 serine-type endopeptidase activity, 0019012 virion; PDB: 2WV9_A 2FOM_A 2VBC_B 3U1I_C 3U1J_A 3LKW_A 3L6P_A 2GGV_A 3E90_C 2IJO_A ....
Probab=31.64 E-value=16 Score=25.68 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 047723 37 AVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKR 54 (79)
..+.+++++|-+|||++|
T Consensus 110 ~~Ip~~~~~w~~~~k~~r 127 (128)
T PF01002_consen 110 IAIPVVAAGWWLWEKSKR 127 (128)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHheecccc
Confidence 677888899999998876
No 330
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=31.59 E-value=60 Score=24.94 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 047723 32 LLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQKKK 53 (79)
+.+|++++++.+++-|++-||-
T Consensus 72 i~aL~~VI~Liy~l~rwL~rR~ 93 (219)
T PRK13415 72 IGATLFVIFLIYALVKWLNKRN 93 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444445444443
No 331
>COG4970 FimT Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.40 E-value=74 Score=23.59 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=22.4
Q ss_pred CCceEehhHHHHH---HHHHHHHHHHHHHHHhHHHHHHH
Q 047723 24 TGAKVGIILLGLV---AVGLFSFFLFKLWQKKKREEQYA 59 (79)
Q Consensus 24 tgv~VviIl~vlv---~v~l~~~~lYK~WQKKKREeQ~A 59 (79)
.|..++=++++++ +++++++=-|+-|-+++|.+-.|
T Consensus 8 rGfTL~ELliviAIlAIla~~A~P~fs~~i~~~rl~s~a 46 (181)
T COG4970 8 RGFTLLELLIVLAILAILAVIAAPNFSQWIRSQRLRSAA 46 (181)
T ss_pred CceeHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4555544444444 45555555688999888876544
No 332
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=31.24 E-value=97 Score=28.10 Aligned_cols=22 Identities=23% Similarity=0.656 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 047723 41 FSFFLFKLWQKKKREEQYARLL 62 (79)
Q Consensus 41 ~~~~lYK~WQKKKREeQ~AR~l 62 (79)
++..+++.|+.+++..+-++-+
T Consensus 46 ~~~~~~~~~~~~r~~~~~~~~~ 67 (1169)
T TIGR03348 46 LLWLLIRQWRARRRNQQLLAAL 67 (1169)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3344578888765554444433
No 333
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=31.20 E-value=68 Score=24.45 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKKREeQ 57 (79)
+++.+++++..++-..++++++|++.++
T Consensus 129 ~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 156 (288)
T TIGR02854 129 FILIGFPILYYFVKRRMDAIRDRAILDK 156 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444444555555666778887766544
No 334
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=31.18 E-value=35 Score=25.57 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=5.6
Q ss_pred HHHHHHHHHhHH
Q 047723 43 FFLFKLWQKKKR 54 (79)
Q Consensus 43 ~~lYK~WQKKKR 54 (79)
-..+++|+++++
T Consensus 141 ~~~~~~i~~~~~ 152 (293)
T PF03419_consen 141 KRLWKYIKRRRI 152 (293)
T ss_pred HHHHHHHHHHHh
Confidence 334555555443
No 335
>PF03073 TspO_MBR: TspO/MBR family; InterPro: IPR004307 Members of this group are involved in transmembrane signalling. In both prokaryotes and mitochondria they are localized to the outer membrane, and have been shown to bind and transport dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway [, ]. They are associated with the major outer membrane porins (in prokaryotes) and with the voltage-dependent anion channel (in mitochondria) []. Rhodobacter sphaeroides TspO (previously CrtK) is involved in signal transduction, functioning as a negative regulator of the expression of some photosynthesis genes (PpsR/AppA repressor/antirepressor regulon). This down-regulation is believed to be in response to oxygen levels. TspO works through (or modulates) the PpsR/AppA system and acts upstream of the site of action of these regulatory proteins []. It has been suggested that the TspO regulatory pathway works by regulating the efflux of certain tetrapyrrole intermediates of the haem/bacteriochlorophyll biosynthetic pathways in response to the availability of molecular oxygen, thereby causing the accumulation of a biosynthetic intermediate that serves as a corepressor for the regulated genes []. A homologue of the TspO protein in Rhizobium meliloti (Sinorhizobium meliloti) is involved in regulating expression of the ndi locus in response to stress conditions []. There is evidence that the S. meliloti TspO acts through, or in addition to, the FixL regulatory system. In animals, the peripheral-type benzodiazepine receptor (PBR, MBR) is a mitochondrial protein (located in the outer mitochondrial membrane) characterised by its ability to bind with nanomolar affinity to a variety of benzodiazepine-like drugs, as well as to dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway. Depending upon the tissue, it was shown to be involved in steroidogenesis, haem biosynthesis, apoptosis, cell growth and differentiation, mitochondrial respiratory control, and immune and stress response, but the precise function of the PBR remains unclear. The role of PBR in the regulation of cholesterol transport from the outer to the inner mitochondrial membrane, the rate-determining step in steroid biosynthesis, has been studied in detail. PBR is required for the binding, uptake and release, upon ligand activation, of the substrate cholesterol []. PBR forms a multimeric complex with the voltage-dependent anion channel (VDAC) [] and adenine nucleotide carrier []. Molecular modeling of PBR suggested that it might function as a channel for cholesterol. Indeed, cholesterol uptake and transport by bacterial cells was induced upon PBR expression. Mutagenesis studies identified a cholesterol recognition/interaction motif (CRAC) in the cytoplasmic C terminus of PBR [, ]. In complementation experiments, rat PBR (pk18) functionally substitutes for its homologue TspO in R. sphaeroides, negatively affecting transcription of specific photosynthesis genes []. This suggests that PBR may function as an oxygen sensor, transducing an oxygen-triggered signal leading to an adaptive cellular response. These observations suggest that fundamental aspects of this receptor and the downstream signal transduction pathway are conserved in bacteria and higher eukaryotic mitochondria. The alpha-3 subdivision of the purple bacteria is considered to be a likely source of the endosymbiont that ultimately gave rise to the mitochondrion. Therefore, it is possible that the mammalian PBR remains both evolutionarily and functionally related to the TspO of R. sphaeroides.; GO: 0016021 integral to membrane
Probab=30.91 E-value=59 Score=21.98 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 047723 37 AVGLFSFFLFKLWQKKKREEQYARLLKLF 65 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~AR~lkLF 65 (79)
.-++.++..|..|++.++.+.+.+.+-+|
T Consensus 48 ly~l~g~a~~~v~~~~~~~~~~~~~l~l~ 76 (148)
T PF03073_consen 48 LYILMGIASYLVWRKGGGSPRRRRALALY 76 (148)
T ss_pred HHHHHHHHHHhhHhcccCcchhHHHHHHH
Confidence 33456777899999987777777777665
No 336
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=30.90 E-value=1.6e+02 Score=22.22 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=10.3
Q ss_pred ehhHHHHHHHHHHHHHHHHHHH
Q 047723 29 GIILLGLVAVGLFSFFLFKLWQ 50 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lYK~WQ 50 (79)
+|.++++.++++....+++|-|
T Consensus 4 vil~~iv~il~lvl~~l~~~Ir 25 (175)
T COG4741 4 VILILIVFILALVLYLLRAYIR 25 (175)
T ss_pred eHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555543
No 337
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=30.81 E-value=60 Score=21.08 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047723 33 LGLVAVGLFSFFLFKLWQ 50 (79)
Q Consensus 33 ~vlv~v~l~~~~lYK~WQ 50 (79)
+.++++++++++.++|=.
T Consensus 5 ~i~~lii~~~~~~~~~l~ 22 (121)
T PF14276_consen 5 IIFILIIALSIFSNNYLN 22 (121)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 333345555555555543
No 338
>PTZ00087 thrombosponding-related protein; Provisional
Probab=30.78 E-value=63 Score=26.46 Aligned_cols=33 Identities=24% Similarity=0.167 Sum_probs=19.7
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ 57 (79)
+=-+++|+++.+ +++-+..++|+..-+||-.|.
T Consensus 295 t~~i~~i~~piv-~vi~v~~ily~ify~~k~~ek 327 (340)
T PTZ00087 295 TFKILIILLPIV-LIICVMGILYHIFYKKKGAEK 327 (340)
T ss_pred cceEeeeehhHH-HHHHHHHHHHHHhhhccchHH
Confidence 434445555544 444455679998888885543
No 339
>TIGR01708 typeII_sec_gspH general secretion pathway protein H. This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=30.78 E-value=1.6e+02 Score=19.33 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=21.2
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHh
Q 047723 28 VGIILLGLVAVGLFSFFLFKLWQKKKREEQYA-RLLK 63 (79)
Q Consensus 28 VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~A-R~lk 63 (79)
+++++..+++++.+++..|.-|+.+.+-++.| +|..
T Consensus 11 llvvlaIiail~~~~~~~~~~~~~~~~~~~~a~~l~~ 47 (143)
T TIGR01708 11 LLVVLAIMGLVAAAAALSLVSHYGTKSLDQVAGRLAA 47 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 45666666766666666777665555444444 4433
No 340
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=30.71 E-value=64 Score=23.73 Aligned_cols=12 Identities=8% Similarity=0.152 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhH
Q 047723 42 SFFLFKLWQKKK 53 (79)
Q Consensus 42 ~~~lYK~WQKKK 53 (79)
++++|-+++||+
T Consensus 305 ~~~~~~~fkrk~ 316 (318)
T TIGR00383 305 ALGPLIYFRRKG 316 (318)
T ss_pred HHHHHHHHHHcC
Confidence 333555555543
No 341
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=30.70 E-value=83 Score=20.97 Aligned_cols=31 Identities=13% Similarity=0.289 Sum_probs=16.5
Q ss_pred CceEehhHHHHH-HHHHHHHHHHHHHHHhHHH
Q 047723 25 GAKVGIILLGLV-AVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 25 gv~VviIl~vlv-~v~l~~~~lYK~WQKKKRE 55 (79)
|+.++++-.+.. ++++.++++|.+-++|-+.
T Consensus 98 gi~~Al~tT~~GL~vai~~~~~~~~l~~~~~~ 129 (139)
T PF01618_consen 98 GISVALITTAYGLVVAIPALPFYNYLKRRVER 129 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433 4555666677766665543
No 342
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=30.65 E-value=58 Score=22.39 Aligned_cols=10 Identities=40% Similarity=0.610 Sum_probs=6.6
Q ss_pred HHHHHHhHHH
Q 047723 46 FKLWQKKKRE 55 (79)
Q Consensus 46 YK~WQKKKRE 55 (79)
+.-|.||||.
T Consensus 52 fvCC~kRkrs 61 (94)
T PF05393_consen 52 FVCCKKRKRS 61 (94)
T ss_pred HHHHHHhhhc
Confidence 4567777764
No 343
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=30.11 E-value=52 Score=22.23 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=8.5
Q ss_pred eEehhHHHHHHHHHHH
Q 047723 27 KVGIILLGLVAVGLFS 42 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~ 42 (79)
.+..||+|||++|++.
T Consensus 26 ~lMtILivLVIIiLlI 41 (85)
T PF10717_consen 26 TLMTILIVLVIIILLI 41 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666666555443
No 344
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=30.09 E-value=54 Score=20.93 Aligned_cols=13 Identities=23% Similarity=0.703 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhH
Q 047723 41 FSFFLFKLWQKKK 53 (79)
Q Consensus 41 ~~~~lYK~WQKKK 53 (79)
++..+|+..+|++
T Consensus 118 lG~~l~~~~~~~~ 130 (133)
T PF04892_consen 118 LGYLLYRLIRKRW 130 (133)
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444443
No 345
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=30.05 E-value=77 Score=21.38 Aligned_cols=24 Identities=13% Similarity=0.451 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
.|++++++.++..+.+||.|+...
T Consensus 77 aIVIg~av~a~lL~l~~r~~~~~~ 100 (114)
T PRK12660 77 AIVIGFGMTAFLLVLVYRTYKVTK 100 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 444445555556666777776543
No 346
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=29.94 E-value=47 Score=27.11 Aligned_cols=36 Identities=25% Similarity=0.466 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFE 66 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFE 66 (79)
|++++.++++++.+.--+|.-||+..++=|=-.||-
T Consensus 7 ILIIvG~IAIiaLLvhGlWtsRkE~s~~F~~~p~~r 42 (324)
T COG3115 7 ILIIVGAIAIIALLVHGLWTSRKERSSYFRDRPLKR 42 (324)
T ss_pred HHHHHHHHHHHHHHHhhhhhcchhhccccccCccch
Confidence 344444555555555667998887776655445554
No 347
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=29.92 E-value=1.7e+02 Score=20.50 Aligned_cols=33 Identities=18% Similarity=0.072 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHH-HHHh---HHHHHHHHHHhhhhcch
Q 047723 37 AVGLFSFFLFKL-WQKK---KREEQYARLLKLFEEDD 69 (79)
Q Consensus 37 ~v~l~~~~lYK~-WQKK---KREeQ~AR~lkLFEedD 69 (79)
.++++.++++++ |.+. ==++.+.+.-+-+++-+
T Consensus 35 nflil~~iL~~f~~~~~v~~~L~~R~~~I~~~l~~Ae 71 (184)
T PRK13455 35 AFLLFIGILVYFKVPGMIGGMLDKRAEGIRSELEEAR 71 (184)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444554 6542 22444455555444433
No 348
>PRK14758 hypothetical protein; Provisional
Probab=29.64 E-value=70 Score=17.58 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHHHH
Q 047723 30 IILLGLVAVGLFSF 43 (79)
Q Consensus 30 iIl~vlv~v~l~~~ 43 (79)
+|++++.+|++++.
T Consensus 9 liLivlIlCalia~ 22 (27)
T PRK14758 9 FILIILILCALIAA 22 (27)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555543
No 349
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.56 E-value=36 Score=28.58 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhcc
Q 047723 42 SFFLFKLWQKKKREEQYARLLKLFEED 68 (79)
Q Consensus 42 ~~~lYK~WQKKKREeQ~AR~lkLFEed 68 (79)
-+.----|-+|| .|+||+||-+
T Consensus 115 ~~~~~~~~~~~~-----~~~~~~~~~~ 136 (436)
T PRK11889 115 QTGNSEEWARKK-----EKLLKLFEKG 136 (436)
T ss_pred HcCChHHHHHHH-----HHHHHHHhcc
Confidence 344456788877 5899999975
No 350
>PF15392 Joubert: Joubert syndrome-associated
Probab=29.32 E-value=59 Score=26.59 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=19.3
Q ss_pred HHHHHHhHHHHHHHHHHhhhhcc
Q 047723 46 FKLWQKKKREEQYARLLKLFEED 68 (79)
Q Consensus 46 YK~WQKKKREeQ~AR~lkLFEed 68 (79)
.+.|-||||-|+.|-.|+=.+|-
T Consensus 59 Iq~WMkRKrkERmaEYl~qlaEk 81 (329)
T PF15392_consen 59 IQAWMKRKRKERMAEYLKQLAEK 81 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999877653
No 351
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=29.13 E-value=57 Score=22.79 Aligned_cols=10 Identities=30% Similarity=0.926 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 047723 36 VAVGLFSFFL 45 (79)
Q Consensus 36 v~v~l~~~~l 45 (79)
+++++++|++
T Consensus 15 IglAL~aFIv 24 (145)
T PF13623_consen 15 IGLALFAFIV 24 (145)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 352
>PHA03399 pif3 per os infectivity factor 3; Provisional
Probab=28.95 E-value=1.2e+02 Score=22.93 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q 047723 34 GLVAVGLFSFFLFKLWQKKKREEQYA 59 (79)
Q Consensus 34 vlv~v~l~~~~lYK~WQKKKREeQ~A 59 (79)
.+++++++.+++++.||+--.+++.+
T Consensus 8 ~livl~iv~~~~~~~~~~~~~~~~~~ 33 (200)
T PHA03399 8 LLIILLIVYYYTLKFVQQLNLNDDEA 33 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33455556666777887766555553
No 353
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=28.88 E-value=66 Score=23.16 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 047723 41 FSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 41 ~~~~lYK~WQKKKREeQ~ 58 (79)
++...|+.=|||||.+.|
T Consensus 97 ~~alcW~~~~rkK~~kr~ 114 (129)
T PF15099_consen 97 CSALCWKPIIRKKKKKRR 114 (129)
T ss_pred hhhheehhhhHhHHHHhh
Confidence 343456666666654433
No 354
>TIGR02805 exbB2 tonB-system energizer ExbB, group 2. Members of this protein family appear to be the ExbB protein of an ExbBD proton-transporting membrane complex that, by means of TonB, energizes transport by TonB-dependent receptors. Note that this family represents one of at least two distinct groups TolQ homologs designated ExbB - see also TIGR02797. Each group associates with a distinct group of ExbD proteins, and a single species may have two ExbB/ExbD/TonB systems.
Probab=28.79 E-value=76 Score=22.75 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=22.8
Q ss_pred CCceEehhHHHHH-HHHHHHHHHHHHHHHhHHHH
Q 047723 24 TGAKVGIILLGLV-AVGLFSFFLFKLWQKKKREE 56 (79)
Q Consensus 24 tgv~VviIl~vlv-~v~l~~~~lYK~WQKKKREe 56 (79)
.|+..+.+-.+.. ++++-+.+.|.++++|-+..
T Consensus 97 ~GIs~ALitTa~GL~VAIpali~yn~l~~rv~~~ 130 (138)
T TIGR02805 97 LGLSLALKATALGLLVAIPSLVFYNALLRKVEVN 130 (138)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555544 77888999999999987543
No 355
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.52 E-value=54 Score=23.94 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 047723 35 LVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 35 lv~v~l~~~~lYK~WQKKKR 54 (79)
.+.+++.+|+.|=+|=-+||
T Consensus 14 ~agiag~af~gYciYFd~KR 33 (143)
T KOG4056|consen 14 AAGIAGLAFIGYCIYFDKKR 33 (143)
T ss_pred HHHHHHHHHHHHHhhccccc
Confidence 34677778888888854443
No 356
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=28.46 E-value=74 Score=26.82 Aligned_cols=17 Identities=41% Similarity=0.798 Sum_probs=13.3
Q ss_pred HHHHHhHHHHHHHHHHh
Q 047723 47 KLWQKKKREEQYARLLK 63 (79)
Q Consensus 47 K~WQKKKREeQ~AR~lk 63 (79)
-+|-.|++|+|-+|+-+
T Consensus 256 ~~~e~k~~e~q~~ri~R 272 (453)
T PLN03098 256 FLWENKKEEEQMSQITR 272 (453)
T ss_pred HHHHhcccHHHHHHHHh
Confidence 35788888999999744
No 357
>PRK00404 tatB sec-independent translocase; Provisional
Probab=28.39 E-value=80 Score=22.75 Aligned_cols=10 Identities=40% Similarity=0.674 Sum_probs=5.4
Q ss_pred chhhhhhhCC
Q 047723 68 DDELEVELGL 77 (79)
Q Consensus 68 dDdle~ELGl 77 (79)
-+|+++|+|+
T Consensus 47 k~ei~~E~~~ 56 (141)
T PRK00404 47 KQEVEREIGA 56 (141)
T ss_pred HHHHHHhhCH
Confidence 3455556554
No 358
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=28.34 E-value=75 Score=24.80 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhHH
Q 047723 38 VGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 38 v~l~~~~lYK~WQKKKR 54 (79)
++++.+.+|-.||+.|+
T Consensus 96 ~lii~lGl~ll~r~~r~ 112 (279)
T PRK10019 96 VIIISTAFWMFWRTWRG 112 (279)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555554443
No 359
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=28.31 E-value=84 Score=23.45 Aligned_cols=26 Identities=12% Similarity=0.027 Sum_probs=11.2
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 28 VGIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 28 VviIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
+++++++++++++++++++-+|+.++
T Consensus 10 l~l~~~~~~~v~~~~~~~~~~~~~~~ 35 (607)
T PRK11360 10 LILLVILLVIVPTLLIGYILETEGRS 35 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33333333444444444454554443
No 360
>PRK01908 electron transport complex protein RnfG; Validated
Probab=28.26 E-value=1.7e+02 Score=21.49 Aligned_cols=31 Identities=23% Similarity=-0.007 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKKREEQYAR 60 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR 60 (79)
++|.++++++.+++.+-.-+=+.+-++++++
T Consensus 6 ~~L~~i~~i~~~lLa~v~~~T~~~I~~~~~~ 36 (205)
T PRK01908 6 ITLALFAALCTGLTAVVNQLTKDTIAEQAAL 36 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4444444444444433333444444444433
No 361
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=28.19 E-value=70 Score=19.14 Aligned_cols=19 Identities=47% Similarity=0.607 Sum_probs=13.0
Q ss_pred ehhHHHHHHHHHHHHHHHH
Q 047723 29 GIILLGLVAVGLFSFFLFK 47 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lYK 47 (79)
+|++.++++++.++..+-+
T Consensus 19 vIil~GF~~Va~~si~lLs 37 (42)
T TIGR02808 19 FIILSGFVAVAVTSILLLN 37 (42)
T ss_pred hHHhhhhHHHHHHHHHHHH
Confidence 5777888777777665543
No 362
>PRK05415 hypothetical protein; Provisional
Probab=28.17 E-value=1.4e+02 Score=24.07 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=14.7
Q ss_pred HHHHHhHHHHHHHHHHhhhhcch
Q 047723 47 KLWQKKKREEQYARLLKLFEEDD 69 (79)
Q Consensus 47 K~WQKKKREeQ~AR~lkLFEedD 69 (79)
++.+=|++++.|.+--.|.+.+|
T Consensus 124 ~l~rL~~~~~~r~~a~~l~~~~~ 146 (341)
T PRK05415 124 RLRRLRQRAHLRDEARALLHSHD 146 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 44455677777777777766554
No 363
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.16 E-value=1.3e+02 Score=24.53 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKK 52 (79)
|.+++++++.+..|+.|+.|...
T Consensus 174 i~~l~v~~il~~~f~i~~~~~~~ 196 (348)
T KOG4628|consen 174 ISLLTVVAILVTCFFIYRIRRLI 196 (348)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666677787776543
No 364
>PF08375 Rpn3_C: Proteasome regulatory subunit C-terminal; InterPro: IPR013586 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome is a self-compartmentalising protease responsible for the regulated degradation of intracellular proteins in eukaryotes [, ]. This giant intracellular protease is formed by several subunits arranged into two 19S polar caps, where protein recognition and ATP-dependent unfolding occur, flanking a 20S central barrel-shaped structure with an inner proteolytic chamber. This overall structure is highly conserved among eukaryotes and is essential for cell viability. Proteins targeted to the 26S proteasome are conjugated with a polyubiquitin chain by an enzymatic cascade before delivery to the 26S proteasome for degradation into oligopeptides. The 19S component is divided into a "base" subunit containing six ATPases (Rpt proteins) and two non-ATPases (Rpn1, Rpn2), and a "lid" subunit composed of eight stoichiometric proteins (Rpn3, Rpn5, Rpn6, Rpn7, Rpn8, Rpn9, Rpn11, Rpn12) []. Additional non-essential and species specific proteins may also be present. The 19S unit performs several essential functions including binding the specific protein substrates, unfolding them, cleaving the attached ubiquitin chains, opening the 20S subunit, and driving the unfolded polypeptide into the proteolytic chamber for degradation. The 26s proteasome and 19S regulator are of medical interest due to their involvement in burn rehabilitation []. This eukaryotic domain is found at the C terminus of 26S proteasome regulatory subunits such as the non-ATPase Rpn3 subunit which is essential for proteasomal function []. It occurs together with the PCI/PINT domain (IPR000717 from INTERPRO). ; GO: 0030234 enzyme regulator activity, 0042176 regulation of protein catabolic process, 0000502 proteasome complex
Probab=28.11 E-value=52 Score=20.91 Aligned_cols=19 Identities=42% Similarity=0.583 Sum_probs=13.5
Q ss_pred HhHHHHHHHHHHhhhhcch
Q 047723 51 KKKREEQYARLLKLFEEDD 69 (79)
Q Consensus 51 KKKREeQ~AR~lkLFEedD 69 (79)
++.|++|.--+.|..+|+|
T Consensus 47 ~~ere~~e~el~~e~~e~D 65 (68)
T PF08375_consen 47 RREREQQEEELAKEIEEGD 65 (68)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 4556666777888888874
No 365
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=28.09 E-value=1.2e+02 Score=20.91 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=20.3
Q ss_pred cCCCCceEehhHHHHHHHHHHHHHHHHHHHHhHH
Q 047723 21 RSNTGAKVGIILLGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 21 ~~~tgv~VviIl~vlv~v~l~~~~lYK~WQKKKR 54 (79)
.++-|+...+|+..+++++++-|+-.|.=+|-+|
T Consensus 30 ~~~Lgm~~lvI~~iFil~VilwfvCC~kRkrsRr 63 (94)
T PF05393_consen 30 WPNLGMWFLVICGIFILLVILWFVCCKKRKRSRR 63 (94)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 3344544444444445666777778777777655
No 366
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=28.08 E-value=86 Score=23.08 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhHH-------HHHHHHHHhhhhc
Q 047723 37 AVGLFSFFLFKLWQKKKR-------EEQYARLLKLFEE 67 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKR-------EeQ~AR~lkLFEe 67 (79)
+++++++++|.+=+|+.| +++++|+-.|.++
T Consensus 115 llllG~~~~~~~~rrr~~~~~~~Ls~ee~~rl~~ll~~ 152 (153)
T COG3088 115 LLLLGGVLLVRRARRRVREPPQTLSAEEEARLARLLRG 152 (153)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCCChhHHHHHHHHhcC
Confidence 344445556666555532 2667777666544
No 367
>PF12279 DUF3619: Protein of unknown function (DUF3619); InterPro: IPR022064 This protein is found in bacteria. Proteins in this family are about 140 amino acids in length. This protein has two conserved sequence motifs: AAR and DDLP.
Probab=28.05 E-value=1.6e+02 Score=20.52 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
.+++.++.+ ++++.+-+||.-+|-.+-
T Consensus 76 ~~~pl~aLv--~gL~~i~~~q~~~~~~e~ 102 (131)
T PF12279_consen 76 LALPLLALV--AGLAGINYWQDQQRINEL 102 (131)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 344444333 566677889877764443
No 368
>KOG2654 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.95 E-value=89 Score=26.67 Aligned_cols=33 Identities=39% Similarity=0.550 Sum_probs=23.6
Q ss_pred HHHHHHHHHh--HHHHHHHHHHhh----------hhcchhhhhhh
Q 047723 43 FFLFKLWQKK--KREEQYARLLKL----------FEEDDELEVEL 75 (79)
Q Consensus 43 ~~lYK~WQKK--KREeQ~AR~lkL----------FEedDdle~EL 75 (79)
-.+|+-|++- +-++|+||+.-+ +.+|+++..+|
T Consensus 333 ke~y~~wgkGlaQ~req~~~leem~~e~~kPlARy~dD~elnq~l 377 (461)
T KOG2654|consen 333 KELYKEWGKGLAQIREQKARLEEMEREKKKPLARYADDPELNQML 377 (461)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHH
Confidence 3589999986 457889998765 45666665554
No 369
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=27.88 E-value=51 Score=23.67 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHhHH
Q 047723 39 GLFSFFLFKLWQKKKR 54 (79)
Q Consensus 39 ~l~~~~lYK~WQKKKR 54 (79)
.+++.++.-++.+|++
T Consensus 387 ~l~~~~~~~~~~~~~~ 402 (408)
T PRK09874 387 VLFNAVYSWNSLRRRR 402 (408)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3333333333344443
No 370
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=27.79 E-value=1.7e+02 Score=21.58 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047723 34 GLVAVGLFSFFLFKLWQ 50 (79)
Q Consensus 34 vlv~v~l~~~~lYK~WQ 50 (79)
+++++++++++-|=.||
T Consensus 42 ~~g~vL~l~i~Y~~iWq 58 (178)
T PRK09731 42 AAVVFLFSVGYYVLIWQ 58 (178)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344444444444444
No 371
>PF15050 SCIMP: SCIMP protein
Probab=27.69 E-value=70 Score=23.19 Aligned_cols=7 Identities=14% Similarity=0.776 Sum_probs=4.0
Q ss_pred HHHHHHH
Q 047723 40 LFSFFLF 46 (79)
Q Consensus 40 l~~~~lY 46 (79)
++++|+|
T Consensus 22 ~lglIly 28 (133)
T PF15050_consen 22 VLGLILY 28 (133)
T ss_pred HHHHHHH
Confidence 3456666
No 372
>PTZ00444 hypothetical protein; Provisional
Probab=27.63 E-value=1.8e+02 Score=22.05 Aligned_cols=16 Identities=38% Similarity=0.721 Sum_probs=13.3
Q ss_pred HHHHhHHHHHHHHHHh
Q 047723 48 LWQKKKREEQYARLLK 63 (79)
Q Consensus 48 ~WQKKKREeQ~AR~lk 63 (79)
=||+|+..+-|.-++|
T Consensus 25 p~~~k~~~~~q~~iik 40 (184)
T PTZ00444 25 PWTKKRKAENQMGLIK 40 (184)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4999999888888776
No 373
>PLN03155 cytochrome c oxidase subunit 5C; Provisional
Probab=27.53 E-value=1.7e+02 Score=18.79 Aligned_cols=14 Identities=21% Similarity=0.648 Sum_probs=7.7
Q ss_pred HHHH--HHHHhHHHHH
Q 047723 44 FLFK--LWQKKKREEQ 57 (79)
Q Consensus 44 ~lYK--~WQKKKREeQ 57 (79)
.+|| .|+.++|.+.
T Consensus 32 ~~WKmhHWn~qrkt~~ 47 (63)
T PLN03155 32 GLWKMHHWNEQRKTRS 47 (63)
T ss_pred hHHHHhhhhhHHHHHH
Confidence 3455 5666665544
No 374
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.41 E-value=53 Score=26.57 Aligned_cols=31 Identities=13% Similarity=0.309 Sum_probs=16.3
Q ss_pred CcccccccccCCCCceEehhHHHHHHHHHHHHHH
Q 047723 12 KQSAAHHTSRSNTGAKVGIILLGLVAVGLFSFFL 45 (79)
Q Consensus 12 ~k~~~~~~~~~~tgv~VviIl~vlv~v~l~~~~l 45 (79)
.||+.| -+. ++...+|.++.+++++++.+++
T Consensus 270 ~KAe~y--Qk~-~~k~~~i~~L~l~ii~llvlli 300 (305)
T KOG0809|consen 270 HKAERY--QKR-NKKMKVILMLTLLIIALLVLLI 300 (305)
T ss_pred HHHHHH--Hhc-CCceEehHHHHHHHHHHHHHHH
Confidence 456655 333 5555556555555555554443
No 375
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=27.03 E-value=92 Score=22.45 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhH
Q 047723 37 AVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKK 53 (79)
++++.....++.|++||
T Consensus 189 ~~~~~~~~~~~~~~~~~ 205 (208)
T COG0586 189 LVLLLALLWWLRRRKKK 205 (208)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33334444444444444
No 376
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=26.99 E-value=98 Score=21.20 Aligned_cols=18 Identities=0% Similarity=0.560 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047723 35 LVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 35 lv~v~l~~~~lYK~WQKK 52 (79)
++++++++.++|-.|+|-
T Consensus 10 ~V~V~IVclliya~YRR~ 27 (92)
T PHA02681 10 VIVISIVCYIVIMMYRRS 27 (92)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 445556666677777665
No 377
>KOG4636 consensus Uncharacterized conserved protein with TLDc domain [Function unknown]
Probab=26.91 E-value=29 Score=29.50 Aligned_cols=30 Identities=27% Similarity=0.236 Sum_probs=23.0
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhcchhhhh
Q 047723 44 FLFKLWQKKKREEQYARLLKLFEEDDELEV 73 (79)
Q Consensus 44 ~lYK~WQKKKREeQ~AR~lkLFEedDdle~ 73 (79)
-=||+||++.-|+|+.-=|+-|.=+|-.|.
T Consensus 437 qk~kkwq~~~te~~r~v~L~~~tW~D~Pdk 466 (483)
T KOG4636|consen 437 QKLKKWQKQQTEKHRRVPLPGNTWDDNPDK 466 (483)
T ss_pred HHHHHHHHHHHhhcccccCCCCccccChHH
Confidence 358999999988888777887866666554
No 378
>TIGR00247 conserved hypothetical protein, YceG family. This uncharacterized protein family, found in three of four microbial genomes, virtually always once per genome, includes YceG from Escherichia coli. This protein is encoded next to PabC, 4-amino-4-deoxychorismate lyase, in E. coli and numerous other proteobacteria, but that proximity is not conserved in other lineages. Numerous members of this family have been misannotated as aminodeoxychorismate lyase, apparently because of promiximty to PabC.
Probab=26.72 E-value=56 Score=25.38 Aligned_cols=7 Identities=29% Similarity=0.296 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 047723 41 FSFFLFK 47 (79)
Q Consensus 41 ~~~~lYK 47 (79)
++++.|.
T Consensus 19 ~~~~~~~ 25 (342)
T TIGR00247 19 GSILSYK 25 (342)
T ss_pred HHHHHHH
Confidence 3333443
No 379
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=26.71 E-value=67 Score=24.95 Aligned_cols=34 Identities=26% Similarity=0.218 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHhh
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKKREEQY------ARLLKL 64 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKKREeQ~------AR~lkL 64 (79)
-+..++.++.++++.++.++...++.+. .|+.++
T Consensus 160 rl~~ii~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 199 (340)
T PF12794_consen 160 RLAFIILLLLLAVFLWRLLRPGWGLYQPKPDSWIHRLRYL 199 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccccCCCcchhHHHHHH
Confidence 3445557777888999999999887776 565554
No 380
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=26.68 E-value=1.1e+02 Score=21.24 Aligned_cols=17 Identities=6% Similarity=0.192 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 047723 36 VAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 36 v~v~l~~~~lYK~WQKK 52 (79)
+++.+++..+++.|++|
T Consensus 55 ~~lsv~~~~l~rr~~~~ 71 (140)
T COG1585 55 AILSVLLALLGRRFVRR 71 (140)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 35555556666677665
No 381
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=26.61 E-value=81 Score=18.87 Aligned_cols=19 Identities=42% Similarity=0.597 Sum_probs=12.6
Q ss_pred ehhHHHHHHHHHHHHHHHH
Q 047723 29 GIILLGLVAVGLFSFFLFK 47 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lYK 47 (79)
+|++.+++++++++..+-.
T Consensus 19 vI~L~GF~~Vav~~~~lL~ 37 (42)
T PF09574_consen 19 VIILSGFAAVAVASIWLLS 37 (42)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 4677788777777665443
No 382
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=26.60 E-value=73 Score=25.96 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=13.2
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHH
Q 047723 29 GIILLGLVAVGLFSFFLFKLWQK 51 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lYK~WQK 51 (79)
++++.+++++++|.|+-|..|-.
T Consensus 5 ~~~~~~~~l~~f~~f~~~~lwi~ 27 (316)
T PF12127_consen 5 IAILILILLIVFFYFVPVGLWIQ 27 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444555556777788864
No 383
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=26.55 E-value=1.7e+02 Score=20.78 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKK 53 (79)
.++++++..++.....+.+++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~ 131 (284)
T PF01545_consen 109 ALVSIIVNLLLAWYLRRVGKRLQ 131 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-
T ss_pred hhhhhhHHHHHHHHHhhcccccc
Confidence 33333344444444444444433
No 384
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=26.52 E-value=56 Score=25.10 Aligned_cols=16 Identities=19% Similarity=0.532 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhHHHH
Q 047723 41 FSFFLFKLWQKKKREE 56 (79)
Q Consensus 41 ~~~~lYK~WQKKKREe 56 (79)
++...|-+|++|+++.
T Consensus 426 ~g~~~y~~~~~~~~~~ 441 (445)
T PRK11357 426 TGLPAYAFWAKRSRQL 441 (445)
T ss_pred HhhhHHhheechhhhh
Confidence 3444677788776654
No 385
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=26.50 E-value=84 Score=28.66 Aligned_cols=27 Identities=22% Similarity=0.264 Sum_probs=24.7
Q ss_pred CCCCceEehhHHHHHHHHHHHHHHHHH
Q 047723 22 SNTGAKVGIILLGLVAVGLFSFFLFKL 48 (79)
Q Consensus 22 ~~tgv~VviIl~vlv~v~l~~~~lYK~ 48 (79)
-..-++|+-++.||.+++++.++|||.
T Consensus 976 vp~wiIi~svl~GLLlL~llv~~LwK~ 1002 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALLVLLLWKC 1002 (1030)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHhc
Confidence 347999999999999999999999994
No 386
>PRK01770 sec-independent translocase; Provisional
Probab=26.38 E-value=1.2e+02 Score=22.29 Aligned_cols=8 Identities=50% Similarity=0.613 Sum_probs=3.3
Q ss_pred hhhhhhhC
Q 047723 69 DELEVELG 76 (79)
Q Consensus 69 Ddle~ELG 76 (79)
+|++.||+
T Consensus 48 ~e~~~E~~ 55 (171)
T PRK01770 48 NELTQELK 55 (171)
T ss_pred HHHHHHhh
Confidence 34444443
No 387
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=26.19 E-value=1.3e+02 Score=22.68 Aligned_cols=15 Identities=20% Similarity=0.091 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHh
Q 047723 38 VGLFSFFLFKLWQKK 52 (79)
Q Consensus 38 v~l~~~~lYK~WQKK 52 (79)
+.+++++.+-+++..
T Consensus 30 ~~~~~~~~~~~~~~~ 44 (542)
T PRK11086 30 SVLLVVHLLYFSQIS 44 (542)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344444443
No 388
>PRK12704 phosphodiesterase; Provisional
Probab=26.17 E-value=1.3e+02 Score=25.04 Aligned_cols=13 Identities=15% Similarity=0.061 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 047723 36 VAVGLFSFFLFKL 48 (79)
Q Consensus 36 v~v~l~~~~lYK~ 48 (79)
++++++.++.|..
T Consensus 12 vg~~iG~~ig~~i 24 (520)
T PRK12704 12 VALVVGAVIGYFV 24 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333334443
No 389
>PHA02831 EEV host range protein; Provisional
Probab=26.13 E-value=1.3e+02 Score=23.42 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=9.4
Q ss_pred CCCCceEehhHHHHH
Q 047723 22 SNTGAKVGIILLGLV 36 (79)
Q Consensus 22 ~~tgv~VviIl~vlv 36 (79)
+.+++.++||+++..
T Consensus 226 ~~~~~~~~~~~~~~~ 240 (268)
T PHA02831 226 MQQNIITIIILLSII 240 (268)
T ss_pred cccceEeehhHHHHH
Confidence 335777777766654
No 390
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=26.01 E-value=1.7e+02 Score=18.14 Aligned_cols=13 Identities=15% Similarity=-0.108 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 047723 37 AVGLFSFFLFKLW 49 (79)
Q Consensus 37 ~v~l~~~~lYK~W 49 (79)
.++++++.+|...
T Consensus 19 ~~~~~~~~~~~l~ 31 (181)
T PF12729_consen 19 LLIVGIVGLYSLS 31 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 391
>PHA02849 putative transmembrane protein; Provisional
Probab=26.00 E-value=59 Score=21.85 Aligned_cols=18 Identities=33% Similarity=0.261 Sum_probs=8.6
Q ss_pred CCceEehhHHHHHHHHHH
Q 047723 24 TGAKVGIILLGLVAVGLF 41 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~ 41 (79)
.|...+|.++++++++++
T Consensus 14 ~g~v~vi~v~v~vI~i~~ 31 (82)
T PHA02849 14 AGAVTVILVFVLVISFLA 31 (82)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 444444555555544443
No 392
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=25.88 E-value=70 Score=24.70 Aligned_cols=13 Identities=15% Similarity=0.125 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 047723 39 GLFSFFLFKLWQK 51 (79)
Q Consensus 39 ~l~~~~lYK~WQK 51 (79)
++..+.+++.|+|
T Consensus 427 ~~~~~~~~~~~~~ 439 (453)
T PRK09575 427 LVVAPMLWRDVKK 439 (453)
T ss_pred HHHHHHHHHHHHH
Confidence 3333445555654
No 393
>cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases. Bacillus stearothermophilus-like Polymerase I (Pol I), a subgroup of the family-A DNA polymerases, contains an inactive DnaQ-like 3'-5' exonuclease domain in the same polypeptide chain as the polymerase region. The exonuclease-like domain of these proteins possess the same fold as the Klenow fragment (KF) of Escherichia coli Pol I, but does not contain the four critical metal-binding residues necessary for activity. The function of this domain is unknown. It might act as a spacer between the polymerase and the 5'-3' exonuclease domains. Some members of this subgroup, such as those from Bacillus sphaericus and Thermus aquaticus, are thermostable DNA polymerases.
Probab=25.81 E-value=1.2e+02 Score=20.04 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhc
Q 047723 42 SFFLFKLWQKKKREEQYARLLKLFEE 67 (79)
Q Consensus 42 ~~~lYK~WQKKKREeQ~AR~lkLFEe 67 (79)
+..+++.|+.=+.+.+...+++||+|
T Consensus 142 a~~l~~l~~~l~~~L~~~~l~~L~~~ 167 (178)
T cd06140 142 AAAIARLAPKLEEELEENEQLELYYE 167 (178)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46688888888877777788889875
No 394
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=25.76 E-value=53 Score=20.31 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=6.4
Q ss_pred CceEehhHHHHHH
Q 047723 25 GAKVGIILLGLVA 37 (79)
Q Consensus 25 gv~VviIl~vlv~ 37 (79)
|+.++.+|+|+++
T Consensus 17 GVt~mAiLSG~ga 29 (72)
T PF12537_consen 17 GVTLMAILSGFGA 29 (72)
T ss_pred HHHHHHHHhhhhH
Confidence 4445555555543
No 395
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=25.67 E-value=61 Score=25.96 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=29.9
Q ss_pred CceEehhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 047723 25 GAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLF 65 (79)
Q Consensus 25 gv~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLF 65 (79)
|.-..+|++|+.+++.+.|.+|+-.+-+| +.-+-|+-.=|
T Consensus 4 ~l~~~livig~i~i~~il~~~~~r~r~~~-gk~~~~~~~~~ 43 (293)
T PRK00269 4 GLREWLIVIGIIVIAGILFDGWRRMRGGK-GKLKFRLDRSY 43 (293)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhccc-cccccccchhh
Confidence 44567788888999999999999999887 44555554444
No 396
>PRK10836 lysine transporter; Provisional
Probab=25.66 E-value=50 Score=26.02 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhH
Q 047723 38 VGLFSFFLFKLWQKKK 53 (79)
Q Consensus 38 v~l~~~~lYK~WQKKK 53 (79)
+.++..+.||+|+|+|
T Consensus 459 ~~~~~~~~~~~~~~~~ 474 (489)
T PRK10836 459 LFLIIWFGYKLIKGTH 474 (489)
T ss_pred HHHHHHHHHHheecCC
Confidence 3334667899998755
No 397
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=25.63 E-value=1.1e+02 Score=24.99 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=13.0
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhHHH
Q 047723 28 VGIILLGLVAVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 28 VviIl~vlv~v~l~~~~lYK~WQKKKRE 55 (79)
-++++++++.++.+.++++.+|..+.|.
T Consensus 596 g~F~i~~~g~~lal~vfi~E~~~~~~~~ 623 (656)
T KOG1052|consen 596 GLFLILLVGYLLALLVFILELLYSRRRT 623 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444455554444444
No 398
>PRK09458 pspB phage shock protein B; Provisional
Probab=25.54 E-value=1.3e+02 Score=19.79 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhhcchhhhh
Q 047723 55 EEQYARLLKLFEEDDELEV 73 (79)
Q Consensus 55 EeQ~AR~lkLFEedDdle~ 73 (79)
++++.|+-.|.+.-+-+++
T Consensus 38 ~~d~~~L~~L~~~A~rm~~ 56 (75)
T PRK09458 38 QEEQQRLAQLTEKAERMRE 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678888888877665554
No 399
>PRK08389 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=25.43 E-value=1.1e+02 Score=20.49 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=16.4
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 29 GIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
-.|+++++..+++..++++.+|+++
T Consensus 78 taIVI~~a~~A~~Lal~i~~yr~~g 102 (114)
T PRK08389 78 TAIVIGVSTTALALSVAIKLYEKYG 102 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444445566677777888887765
No 400
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=25.37 E-value=1.2e+02 Score=22.14 Aligned_cols=7 Identities=29% Similarity=0.733 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 047723 41 FSFFLFK 47 (79)
Q Consensus 41 ~~~~lYK 47 (79)
++++.|.
T Consensus 23 ~~~~~~~ 29 (457)
T TIGR01386 23 SGFMLYS 29 (457)
T ss_pred HHHHHHH
Confidence 3343443
No 401
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=25.37 E-value=43 Score=26.72 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=16.3
Q ss_pred CCCCceEehhHHHHH-HHHHHHHHHHHHHHHh
Q 047723 22 SNTGAKVGIILLGLV-AVGLFSFFLFKLWQKK 52 (79)
Q Consensus 22 ~~tgv~VviIl~vlv-~v~l~~~~lYK~WQKK 52 (79)
-++|.|.-|.+-|++ +..|++|+.|.|-=|+
T Consensus 364 LstgaIaGIsvavvvvVgglvGfLcWwf~crg 395 (397)
T PF03302_consen 364 LSTGAIAGISVAVVVVVGGLVGFLCWWFICRG 395 (397)
T ss_pred ccccceeeeeehhHHHHHHHHHHHhhheeecc
Confidence 347766666555443 3335566666544333
No 402
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=25.36 E-value=44 Score=26.82 Aligned_cols=21 Identities=19% Similarity=0.501 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 047723 34 GLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 34 vlv~v~l~~~~lYK~WQKKKR 54 (79)
+.+++.++.+++|..+.||++
T Consensus 445 ~~~~~~~~~~~~y~~~~~~~~ 465 (507)
T TIGR00910 445 SFLVTAALPFIIYALHDKKGH 465 (507)
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 334445556667765555533
No 403
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=25.32 E-value=60 Score=23.34 Aligned_cols=38 Identities=34% Similarity=0.380 Sum_probs=24.6
Q ss_pred EehhHHHHH--HHH-HHHHHHHHHHHHhHHHHHHHHHHhhh
Q 047723 28 VGIILLGLV--AVG-LFSFFLFKLWQKKKREEQYARLLKLF 65 (79)
Q Consensus 28 VviIl~vlv--~v~-l~~~~lYK~WQKKKREeQ~AR~lkLF 65 (79)
++++..||. ++. ++-...-|.=|+|+||.|-+.-++-|
T Consensus 85 ~vlLs~GLmlL~~~alcW~~~~rkK~~kr~eSq~~~~~~~~ 125 (129)
T PF15099_consen 85 PVLLSLGLMLLACSALCWKPIIRKKKKKRRESQTALVLNQF 125 (129)
T ss_pred HHHHHHHHHHHHhhhheehhhhHhHHHHhhhhhHHHHhhhh
Confidence 334444443 555 66677777778888888877766644
No 404
>smart00780 PIG-X PIG-X / PBN1. Mammalian PIG-X and yeast PBN1 are essential components of glycosylphosphatidylinositol-mannosyltransferase I. These enzymes are involved in the transfer of sugar molecules.
Probab=25.27 E-value=50 Score=24.19 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=16.6
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHH
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQ 50 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQ 50 (79)
..|-+...+++++.+..++||.|+
T Consensus 179 ~~V~~~T~lv~~lg~~~il~~l~~ 202 (203)
T smart00780 179 PVIELVTLLVVLIGFLYILYKLFR 202 (203)
T ss_pred CeEEEeHHHHHHHHHHhhhhhhcc
Confidence 344555556667777888999886
No 405
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.13 E-value=86 Score=24.26 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=6.4
Q ss_pred ceEehhHHHHHHHH
Q 047723 26 AKVGIILLGLVAVG 39 (79)
Q Consensus 26 v~VviIl~vlv~v~ 39 (79)
+.++|++++.+++.
T Consensus 23 ~rlv~~lL~~~~V~ 36 (211)
T COG3167 23 PRLVFCLLAVAAVL 36 (211)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455554444333
No 406
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=25.13 E-value=58 Score=20.17 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 047723 37 AVGLFSFFLFKLWQK 51 (79)
Q Consensus 37 ~v~l~~~~lYK~WQK 51 (79)
+.+.++++.|.+-.+
T Consensus 71 ~~~~~avv~~~~~~~ 85 (237)
T PF02932_consen 71 ASLEFAVVVYNIHHR 85 (237)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhccc
Confidence 444455666665333
No 407
>TIGR01620 hyp_HI0043 conserved hypothetical protein, TIGR01620. This model includes putative membrane proteins from alpha and gamma proteobacteria, each making up their own clade. The two clades have less than 25% identity between them. We could not find support for the assignment to the sequence from Brucella of being a GTP-binding protein.
Probab=25.09 E-value=1.8e+02 Score=23.04 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=17.7
Q ss_pred HHHHHHhHHHHHHHHHHhhhhcchh
Q 047723 46 FKLWQKKKREEQYARLLKLFEEDDE 70 (79)
Q Consensus 46 YK~WQKKKREeQ~AR~lkLFEedDd 70 (79)
+++.+=|+++..|.+-..+.+++|-
T Consensus 71 ~~l~RL~~~~~~r~~a~~ll~~~~~ 95 (289)
T TIGR01620 71 RRLMRLNARQSLKADAETASLDKSP 95 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 3455667788888888788777664
No 408
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=25.07 E-value=60 Score=24.71 Aligned_cols=22 Identities=32% Similarity=0.727 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKK 52 (79)
++.++++++++++++|-.|=..
T Consensus 113 l~~~~~~~~v~a~~lFPlWP~~ 134 (224)
T PF03839_consen 113 LIGALLLVGVIAICLFPLWPRW 134 (224)
T ss_pred HHHHHHHHHHHHHHhhhcChHH
Confidence 3444456666677788888543
No 409
>COG2869 NqrC Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC [Energy production and conversion]
Probab=25.06 E-value=95 Score=24.75 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=18.8
Q ss_pred CceEehhHHHHHHHHHH--HHHHHHHHHHhHHHHHHHH
Q 047723 25 GAKVGIILLGLVAVGLF--SFFLFKLWQKKKREEQYAR 60 (79)
Q Consensus 25 gv~VviIl~vlv~v~l~--~~~lYK~WQKKKREeQ~AR 60 (79)
+..++|+++.|++-+++ +.++-|==|+..|+.++.|
T Consensus 12 ~tllvvl~lsLvcsvivagaav~Lkp~Q~e~~~lDkq~ 49 (264)
T COG2869 12 GTLLVVLVLSLVCSVIVAGAAVGLKPIQEEQALLDKQK 49 (264)
T ss_pred eeehhHHHHHHHHHHHHhhhheeeChHHHHHHHHhhhh
Confidence 34444444444433333 4445566777777776654
No 410
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.97 E-value=72 Score=21.68 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047723 34 GLVAVGLFSFFLFKLWQK 51 (79)
Q Consensus 34 vlv~v~l~~~~lYK~WQK 51 (79)
++.++.|+++|+.-.|-|
T Consensus 65 vmSvgFIasV~~LHi~gK 82 (88)
T KOG3457|consen 65 VMSVGFIASVFALHIWGK 82 (88)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 334555666777777755
No 411
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=24.92 E-value=1.3e+02 Score=18.09 Aligned_cols=15 Identities=7% Similarity=0.135 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 047723 37 AVGLFSFFLFKLWQK 51 (79)
Q Consensus 37 ~v~l~~~~lYK~WQK 51 (79)
..++++...||+-||
T Consensus 30 L~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 30 LGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 444456667776554
No 412
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=24.89 E-value=97 Score=23.42 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=15.8
Q ss_pred HHHHHHHHhHHHHHHHHHHh
Q 047723 44 FLFKLWQKKKREEQYARLLK 63 (79)
Q Consensus 44 ~lYK~WQKKKREeQ~AR~lk 63 (79)
-.|.-|.++|+++++.+=.+
T Consensus 184 ~~~q~W~~kK~~e~~~~r~~ 203 (264)
T PF13904_consen 184 QRYQEWERKKKEEQQQKREE 203 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46889999999988877544
No 413
>PF05160 DSS1_SEM1: DSS1/SEM1 family; InterPro: IPR007834 This family contains SEM1 and DSS1 which are short acidic proteins. In Saccharomyces cerevisiae, SEM1 is a regulator of both exocyst function and pseudohyphal differentiation []. Loss of DSS1 in Homo sapiens (human) has been associated with split hand/split foot malformations [].; PDB: 3T5V_F 1IYJ_A 1MJE_B 1MIU_B 3T5X_B.
Probab=24.85 E-value=20 Score=22.71 Aligned_cols=13 Identities=69% Similarity=0.897 Sum_probs=8.4
Q ss_pred HHhhhhcchhhhh
Q 047723 61 LLKLFEEDDELEV 73 (79)
Q Consensus 61 ~lkLFEedDdle~ 73 (79)
-++++||||+.|+
T Consensus 7 ~~~~lEeDDEFEe 19 (63)
T PF05160_consen 7 KLKLLEEDDEFEE 19 (63)
T ss_dssp -TTTEESTTS--S
T ss_pred ccCCCcccccccc
Confidence 4678999998874
No 414
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=24.84 E-value=69 Score=22.57 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 047723 37 AVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKR 54 (79)
.++.-...+||+|+.|||
T Consensus 146 ~~~~n~~~i~R~~~~~~~ 163 (163)
T PF10688_consen 146 FIISNLITIYRLYRTKKR 163 (163)
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 444456778999998885
No 415
>PF05434 Tmemb_9: TMEM9; InterPro: IPR008853 This family contains several eukaryotic transmembrane proteins which are homologous to Homo sapiens transmembrane protein 9 Q9P0T7 from SWISSPROT. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to H. sapiens and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localised to the late endosomes and lysosomes []. Members of this family contain CXCXC repeats IPR004153 from INTERPRO in their N-terminal region.; GO: 0016021 integral to membrane
Probab=24.84 E-value=47 Score=24.23 Aligned_cols=9 Identities=56% Similarity=0.575 Sum_probs=3.6
Q ss_pred ccCCCCceE
Q 047723 20 SRSNTGAKV 28 (79)
Q Consensus 20 ~~~~tgv~V 28 (79)
+++.+.+.|
T Consensus 48 ~Rnt~tikV 56 (149)
T PF05434_consen 48 SRNTTTIKV 56 (149)
T ss_pred eeeeeEEEE
Confidence 344344444
No 416
>PF14341 PilX_N: PilX N-terminal
Probab=24.78 E-value=73 Score=18.47 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=7.6
Q ss_pred ceEehhHHHHHHHHHHHH
Q 047723 26 AKVGIILLGLVAVGLFSF 43 (79)
Q Consensus 26 v~VviIl~vlv~v~l~~~ 43 (79)
..+++.++.++++.+.++
T Consensus 3 ~aLvvaLi~l~vltll~~ 20 (51)
T PF14341_consen 3 AALVVALIILLVLTLLGV 20 (51)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 417
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=24.77 E-value=1.2e+02 Score=19.32 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 047723 37 AVGLFSFFLFKLW 49 (79)
Q Consensus 37 ~v~l~~~~lYK~W 49 (79)
.++++.+++|++.
T Consensus 8 ~Flil~~~l~~~~ 20 (132)
T PF00430_consen 8 NFLILFFLLNKFL 20 (132)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 418
>PRK14693 hypothetical protein; Provisional
Probab=24.72 E-value=1.6e+02 Score=25.57 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 047723 32 LLGLVAVGLFSFFLFKLWQKKKREEQYARLLKL 64 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkL 64 (79)
+.+.+++++++|+.|+||--.+-+.-.+++.-|
T Consensus 299 aal~alll~~lY~~l~~~L~~~s~~v~~qI~al 331 (552)
T PRK14693 299 AAVALGVLVLAYGAISFWLDSQGRPIRNALAAW 331 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 333446666788889999988888877777665
No 419
>PF15117 UPF0697: Uncharacterised protein family UPF0697
Probab=24.63 E-value=35 Score=23.60 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=14.8
Q ss_pred cCCCCceEehhHHHHHHHHHHHHHHHHHHHHhHH
Q 047723 21 RSNTGAKVGIILLGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 21 ~~~tgv~VviIl~vlv~v~l~~~~lYK~WQKKKR 54 (79)
.--|+|-+++|+ ++|.+|-|=+|.||
T Consensus 15 NEATNVYlivil--------vS~~l~~YarrNKr 40 (99)
T PF15117_consen 15 NEATNVYLIVIL--------VSFGLFMYARRNKR 40 (99)
T ss_pred hhhccEEeehhH--------HhhHHHHhhhhcCc
Confidence 333555555544 44556666677776
No 420
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=24.47 E-value=87 Score=25.99 Aligned_cols=8 Identities=13% Similarity=-0.076 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 047723 44 FLFKLWQK 51 (79)
Q Consensus 44 ~lYK~WQK 51 (79)
.++|.|..
T Consensus 460 ~~~k~~~~ 467 (482)
T PRK11404 460 IVLKGLWL 467 (482)
T ss_pred HHHhhHhh
Confidence 34444433
No 421
>PF02157 Man-6-P_recep: Mannose-6-phosphate receptor; PDB: 2RLB_A 3K42_A 2RL9_A 3K43_A 1C39_A 1M6P_A 3CY4_A 1KEO_B 2RL7_D 2RL8_B ....
Probab=24.42 E-value=25 Score=27.87 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
+|-++.||+++++++-+++=++|+.--..+|.-+|
T Consensus 189 ~GsVflIIf~iav~vYfiGG~lYqR~v~garG~eq 223 (278)
T PF02157_consen 189 VGSVFLIIFFIAVAVYFIGGILYQRFVMGARGWEQ 223 (278)
T ss_dssp -----------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHhcCchhhh
Confidence 45455555555554444555577765555555443
No 422
>COG3182 PiuB Uncharacterized iron-regulated membrane protein [Function unknown]
Probab=24.42 E-value=68 Score=26.48 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKK 53 (79)
++..++++.+...+.|-.||||+
T Consensus 363 ~l~claii~~~~sG~~~W~kRr~ 385 (442)
T COG3182 363 LLLCLAIILLALSGLVMWWKRRP 385 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333344455666677777776
No 423
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=24.42 E-value=62 Score=19.44 Aligned_cols=28 Identities=18% Similarity=0.445 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhhhc
Q 047723 40 LFSFFLFKLWQKKKREEQYARLLKLFEE 67 (79)
Q Consensus 40 l~~~~lYK~WQKKKREeQ~AR~lkLFEe 67 (79)
++.-|+.|-|++.--+++-++++++|..
T Consensus 6 ~l~~Fa~rAfRRp~~~~e~~~~~~~~~~ 33 (64)
T PF07637_consen 6 ILRRFARRAFRRPLTDEEVDRYLALYDS 33 (64)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 3455799999999999999999999864
No 424
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=24.39 E-value=24 Score=26.70 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 047723 37 AVGLFSFFLFK 47 (79)
Q Consensus 37 ~v~l~~~~lYK 47 (79)
+|++++..+|-
T Consensus 26 LIiiva~~lf~ 36 (217)
T PF07423_consen 26 LIIIVAYQLFF 36 (217)
T ss_pred HHHHHhhhhee
Confidence 33333333443
No 425
>PRK06287 cobalt transport protein CbiN; Validated
Probab=24.37 E-value=63 Score=21.71 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhH
Q 047723 37 AVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKK 53 (79)
++.++++.+.|.=+||+
T Consensus 89 i~l~l~~~~~~~l~r~~ 105 (107)
T PRK06287 89 LVLALAYGVGKIFKKKS 105 (107)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 34444444444444444
No 426
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=24.31 E-value=67 Score=25.29 Aligned_cols=23 Identities=13% Similarity=0.394 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKK 52 (79)
+++++++++++++++.|+.|+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~ 32 (415)
T PRK11556 10 VIVIVVVIAAIAAFWFWQGRSTS 32 (415)
T ss_pred HHHHHHHHHHHHHHHhhhhcccC
Confidence 33333444555566667766543
No 427
>COG4714 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=24.18 E-value=66 Score=25.93 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 047723 37 AVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKR 54 (79)
+++.+++++-|+|++|+.
T Consensus 285 ~v~~~Ga~~~kL~~rK~~ 302 (303)
T COG4714 285 VVLPLGAVLKKLWRRKAK 302 (303)
T ss_pred HhhhhHHHHHHHHhhccC
Confidence 455567778899998863
No 428
>PLN03150 hypothetical protein; Provisional
Probab=24.17 E-value=54 Score=27.30 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=17.1
Q ss_pred ccCCCCceEehhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 047723 20 SRSNTGAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 20 ~~~~tgv~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ 57 (79)
.+...++++.+++.++++++.+.+..++.| +..|+++
T Consensus 543 ~~~~i~~~~~~~~~~l~~~~~~~~~~~~r~-~~~~~~~ 579 (623)
T PLN03150 543 VGAKIGIAFGVSVAFLFLVICAMCWWKRRQ-NILRAQR 579 (623)
T ss_pred CceEEEEEhHHHHHHHHHHHHHhhheeehh-hhcchhh
Confidence 444456555555444444444444444444 3333433
No 429
>PRK13685 hypothetical protein; Provisional
Probab=24.13 E-value=79 Score=23.94 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=7.7
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 047723 44 FLFKLWQKKKREEQYARL 61 (79)
Q Consensus 44 ~lYK~WQKKKREeQ~AR~ 61 (79)
+++-.|.+++|.....+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~ 39 (326)
T PRK13685 22 VALYVVVQRARRRRMLRF 39 (326)
T ss_pred HHHHHHHHhhccchhhcC
Confidence 344455554444333333
No 430
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=24.10 E-value=82 Score=25.10 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=13.8
Q ss_pred ehhHHHHH-HHHHHHHHHHHHHHHhHH
Q 047723 29 GIILLGLV-AVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 29 viIl~vlv-~v~l~~~~lYK~WQKKKR 54 (79)
++|+.+++ .++.++++|.|.|=++++
T Consensus 341 Ilvl~~llG~~lg~~~vL~r~~~r~~~ 367 (377)
T PRK10381 341 IVILAALIGGMLACGFVLLRHAMRSRK 367 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333 445555777777655543
No 431
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=23.96 E-value=96 Score=21.06 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKK 52 (79)
.|++++++.+++.+.+||.||.-
T Consensus 80 aIVIg~Av~a~~lvl~~r~~~~~ 102 (117)
T PRK12659 80 AIVIGFGVQAFAIVLIKRAYQVV 102 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 34444445555566677777654
No 432
>TIGR02596 Verrucomicrobium spinosum paralogous family TIGR02596. This model describes a nearly twenty member protein family unique to Verrucomicrobium spinosum. All members share a type IV pilin-like N-terminal leader sequence (TIGR02532). Sequences are from 207 to 248 in length. The function is unknown.
Probab=23.94 E-value=2.4e+02 Score=21.03 Aligned_cols=32 Identities=6% Similarity=0.071 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKKREEQYARLL 62 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKKREeQ~AR~l 62 (79)
+++|++++++++.+.+-.|+.--+.++..+..
T Consensus 6 LLVVLaIiaILaaia~P~l~~~~~~~~L~~~a 37 (195)
T TIGR02596 6 LLVVIAIIAVLMALSTPVVNQVLAAQQLGSSA 37 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45566666666666666666666555544443
No 433
>PRK10927 essential cell division protein FtsN; Provisional
Probab=23.92 E-value=80 Score=25.64 Aligned_cols=11 Identities=18% Similarity=-0.061 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 047723 37 AVGLFSFFLFK 47 (79)
Q Consensus 37 ~v~l~~~~lYK 47 (79)
++++|.-+||=
T Consensus 43 vlv~fiGGLyF 53 (319)
T PRK10927 43 VLVTFIGGLYF 53 (319)
T ss_pred HHHHHhhheEE
Confidence 33333333443
No 434
>smart00019 SF_P Pulmonary surfactant proteins. Pulmonary surfactant associated proteins promote alveolar stability by lowering the surface tension at the air-liquid interface in the peripheral air spaces. SP-C, a component of surfactant, is a highly hydrophobic peptide of 35 amino acid residues which is processed from a larger precursor protein. SP-C is post-translationally modified by the covalent attachment of two palmitoyl groups on two adjacent cysteines
Probab=23.89 E-value=94 Score=23.53 Aligned_cols=6 Identities=17% Similarity=-0.180 Sum_probs=2.2
Q ss_pred HHHHHH
Q 047723 37 AVGLFS 42 (79)
Q Consensus 37 ~v~l~~ 42 (79)
++++++
T Consensus 48 vVivGa 53 (191)
T smart00019 48 VVIVGA 53 (191)
T ss_pred HHHHHH
Confidence 333333
No 435
>PF10675 DUF2489: Protein of unknown function (DUF2489); InterPro: IPR019617 This entry represents bacterial uncharacterised proteins.
Probab=23.85 E-value=1.8e+02 Score=20.11 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhHHH------HHHHHHHhhhh
Q 047723 42 SFFLFKLWQKKKRE------EQYARLLKLFE 66 (79)
Q Consensus 42 ~~~lYK~WQKKKRE------eQ~AR~lkLFE 66 (79)
+..++++|+.|++. .+++|.-+++|
T Consensus 9 ~~Ll~~l~~q~~~~~~~~~~~~~~r~~~i~e 39 (131)
T PF10675_consen 9 GYLLLKLKKQKEEQQQQQAQAIQERRARILE 39 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667666333 23345555554
No 436
>TIGR01528 NMN_trans_PnuC nicotinamide mononucleotide transporter PnuC. The PnuC protein of E. coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see TIGR01526). This model defines a region corresponding to most of the length of PnuC, found primarily in pathogens. The extreme N- and C-terminal regions are poorly conserved and not included in the alignment and model.
Probab=23.83 E-value=75 Score=22.70 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 047723 37 AVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKR 54 (79)
+..+.++..|..|+|..|
T Consensus 171 vy~~~ai~G~~~W~k~~~ 188 (189)
T TIGR01528 171 IYLFNSLYGFYNWNKSKK 188 (189)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 556667888999987554
No 437
>PF04917 Shufflon_N: Bacterial shufflon protein, N-terminal constant region; InterPro: IPR007001 This domain represents the high-similarity N-terminal constant region shared by shufflon proteins. Shufflon proteins are created as a result of a clustered inversion region. The proteins retain a constant N-terminal domain, with different C-terminal domains.
Probab=23.83 E-value=1.4e+02 Score=23.99 Aligned_cols=32 Identities=9% Similarity=0.042 Sum_probs=20.0
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHhHHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKKKRE 55 (79)
-|..++=++.+|++++++++..|..|+.-..+
T Consensus 6 rGf~llE~~~aL~I~~~~~~~~~~~~~~~~~~ 37 (356)
T PF04917_consen 6 RGFTLLELIIALAILALMAPGGAQWMSDYLED 37 (356)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666777777788777655555433
No 438
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=23.81 E-value=95 Score=23.18 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 047723 37 AVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
++.+.++.+.-+|+.+.|.|.|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK11195 367 FGLLVALAMALLWRWHRRNQRQ 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 4555677777888888776544
No 439
>PF02180 BH4: Bcl-2 homology region 4; InterPro: IPR003093 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic) [, ]. Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. All proteins belonging to the Bcl-2 family [] contain either a BH1, BH2, BH3, or BH4 domain. All anti-apoptotic proteins contain BH1 and BH2 domains, some of them contain an additional N-terminal BH4 domain (Bcl-2, Bcl-x(L), Bcl-w), which is never seen in pro-apoptotic proteins, except for Bcl-x(S). On the other hand, all pro-apoptotic proteins contain a BH3 domain (except for Bad) necessary for dimerisation with other proteins of Bcl-2 family and crucial for their killing activity, some of them also contain BH1 and BH2 domains (Bax, Bak). The BH3 domain is also present in some anti-apoptotic protein, such as Bcl-2 or Bcl-x(L). Proteins that are known to contain these domains include vertebrate Bcl-2 (alpha and beta isoforms) and Bcl-x (isoforms (Bcl-x(L) and Bcl-x(S)); mammalian proteins Bax and Bak; mouse protein Bid; Xenopus laevis proteins Xr1 and Xr11; human induced myeloid leukemia cell differentiation protein MCL1 and Caenorhabditis elegans protein ced-9.; GO: 0042981 regulation of apoptosis; PDB: 1AF3_A 2PON_B 1YSN_A 3PL7_B 3R85_A 2O2N_A 2P1L_C 1R2G_A 2O1Y_A 1BXL_A ....
Probab=23.71 E-value=72 Score=17.34 Aligned_cols=13 Identities=23% Similarity=0.403 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHh
Q 047723 40 LFSFFLFKLWQKK 52 (79)
Q Consensus 40 l~~~~lYK~WQKK 52 (79)
+.=++-||++||.
T Consensus 9 V~~yi~yKLsQrg 21 (27)
T PF02180_consen 9 VEDYISYKLSQRG 21 (27)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhcC
Confidence 3467889999974
No 440
>COG1288 Predicted membrane protein [Function unknown]
Probab=23.45 E-value=1.4e+02 Score=25.65 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhH
Q 047723 42 SFFLFKLWQKKK 53 (79)
Q Consensus 42 ~~~lYK~WQKKK 53 (79)
..+.|-||-.||
T Consensus 229 ~~i~y~~~Ya~K 240 (481)
T COG1288 229 ISIIYVYWYASK 240 (481)
T ss_pred HHHHHHHHHHHH
Confidence 334566665554
No 441
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=23.38 E-value=88 Score=24.82 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKK 53 (79)
++++..+.+++..+.+-+|||+.
T Consensus 143 ~ip~~i~~i~~~~~~~~~~~k~~ 165 (388)
T TIGR00771 143 MLPGAIGAIILTAIAHFFKQRGE 165 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 66666666667777777888844
No 442
>PHA00739 V3 structural protein VP3
Probab=23.35 E-value=19 Score=24.62 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHH
Q 047723 36 VAVGLFSFFLFKLWQ 50 (79)
Q Consensus 36 v~v~l~~~~lYK~WQ 50 (79)
+.+++=++++||.++
T Consensus 76 VlIiVPAvv~Ykiyk 90 (92)
T PHA00739 76 VLIIVPAVVAYKIYK 90 (92)
T ss_pred HHHHhhhheeEEeee
Confidence 455556999999875
No 443
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.32 E-value=22 Score=25.04 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=9.2
Q ss_pred ehhHHHHHHHHHHHHHHH
Q 047723 29 GIILLGLVAVGLFSFFLF 46 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lY 46 (79)
+++++.++++|++++++|
T Consensus 5 l~~ilall~~ii~a~~~~ 22 (113)
T COG5294 5 LIGILALLLIIIGALFIF 22 (113)
T ss_pred HHHHHHHHHHHHhhheEE
Confidence 344445545556655554
No 444
>PRK13561 putative diguanylate cyclase; Provisional
Probab=23.30 E-value=1.9e+02 Score=23.37 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhHH-HHHH
Q 047723 37 AVGLFSFFLFKLWQKKKR-EEQY 58 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKR-EeQ~ 58 (79)
++++.+.+.+..++.+.. .+||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~q 34 (651)
T PRK13561 12 VFIFCTVLLFHLVQQNRYNTATQ 34 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555666666555 5554
No 445
>KOG0816 consensus Protein involved in mRNA turnover [RNA processing and modification]
Probab=23.29 E-value=50 Score=25.71 Aligned_cols=11 Identities=45% Similarity=0.745 Sum_probs=9.3
Q ss_pred HHHHHHHhhhh
Q 047723 56 EQYARLLKLFE 66 (79)
Q Consensus 56 eQ~AR~lkLFE 66 (79)
..|||+||||+
T Consensus 184 ~rqA~ILKlfg 194 (223)
T KOG0816|consen 184 PRQAKILKLFG 194 (223)
T ss_pred HHHHHHHHHHh
Confidence 46899999996
No 446
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=23.24 E-value=1.6e+02 Score=20.42 Aligned_cols=10 Identities=0% Similarity=-0.091 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 047723 39 GLFSFFLFKL 48 (79)
Q Consensus 39 ~l~~~~lYK~ 48 (79)
.++..|+||-
T Consensus 33 ~lL~~~l~kp 42 (175)
T PRK14472 33 LILKKIAWGP 42 (175)
T ss_pred HHHHHHhHHH
Confidence 3333444443
No 447
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.12 E-value=63 Score=23.67 Aligned_cols=15 Identities=0% Similarity=0.166 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHh
Q 047723 38 VGLFSFFLFKLWQKK 52 (79)
Q Consensus 38 v~l~~~~lYK~WQKK 52 (79)
+.+++.+.|++|+++
T Consensus 23 ~~v~~~~~~~~~~~~ 37 (194)
T MTH00047 23 CWVYIMLCWQVVSGN 37 (194)
T ss_pred HHHHHHHHHHHhccc
Confidence 333345566666543
No 448
>TIGR01711 gspJ general secretion pathway protein J. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.
Probab=23.11 E-value=1.9e+02 Score=20.61 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 047723 32 LLGLVAVGLFSFFLF 46 (79)
Q Consensus 32 l~vlv~v~l~~~~lY 46 (79)
+++++++++++.++|
T Consensus 9 lval~I~ail~~~~~ 23 (192)
T TIGR01711 9 LVAIAIFASLSLGAY 23 (192)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 449
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=23.08 E-value=2.1e+02 Score=18.10 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=10.5
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 047723 45 LFKLWQKKKREEQYARLL 62 (79)
Q Consensus 45 lYK~WQKKKREeQ~AR~l 62 (79)
+..-|..+-+.--+-||+
T Consensus 23 l~~~~~~r~~~~lr~~l~ 40 (62)
T PF11120_consen 23 LARRWLPRIRRTLRRRLF 40 (62)
T ss_pred HHHHHhHHHHHHHHHHhc
Confidence 556666666665555553
No 450
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=23.00 E-value=28 Score=24.59 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKKREeQ 57 (79)
+.|+++ ++++++++|.+.+|++|...
T Consensus 106 ~~P~~~-l~~g~~~~~~~~rr~~~~~~ 131 (148)
T PF03918_consen 106 LGPFLL-LLLGGALLFRRLRRWRRRAA 131 (148)
T ss_dssp ---------------------------
T ss_pred HHHHHH-HHHHHHHHHHHHHhcccCCC
Confidence 444443 33334445555555555443
No 451
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=22.98 E-value=1e+02 Score=22.95 Aligned_cols=33 Identities=6% Similarity=0.141 Sum_probs=22.6
Q ss_pred CceEehhHHHHH-HHHHHHHHHHHHHHHhHHHHH
Q 047723 25 GAKVGIILLGLV-AVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 25 gv~VviIl~vlv-~v~l~~~~lYK~WQKKKREeQ 57 (79)
|+..+.+-.+.. ++++.+++.|.|.++|=+...
T Consensus 167 GI~~ALitTa~GL~vAIPAli~yN~f~~ri~~i~ 200 (227)
T PRK10801 167 GIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLE 200 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 778889999999999876544
No 452
>PRK10364 sensor protein ZraS; Provisional
Probab=22.94 E-value=1.6e+02 Score=22.41 Aligned_cols=12 Identities=25% Similarity=0.866 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q 047723 40 LFSFFLFKLWQK 51 (79)
Q Consensus 40 l~~~~lYK~WQK 51 (79)
++++++++..++
T Consensus 208 ~~~~~~~~~~~~ 219 (457)
T PRK10364 208 LLAFFWYRRYLR 219 (457)
T ss_pred HHHHHHHHHHHH
Confidence 345556666665
No 453
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=22.87 E-value=54 Score=17.85 Aligned_cols=10 Identities=40% Similarity=0.780 Sum_probs=6.9
Q ss_pred HHHHHhHHHH
Q 047723 47 KLWQKKKREE 56 (79)
Q Consensus 47 K~WQKKKREe 56 (79)
--|-|+||+|
T Consensus 17 ISWIK~kr~~ 26 (26)
T PF01372_consen 17 ISWIKNKRQQ 26 (26)
T ss_dssp HHHHHHHHH-
T ss_pred HHHHHHHhcC
Confidence 3588888864
No 454
>PF14851 FAM176: FAM176 family
Probab=22.78 E-value=16 Score=26.45 Aligned_cols=29 Identities=10% Similarity=-0.037 Sum_probs=14.0
Q ss_pred ceEehhHHHHH--HHHHHHHHHHHHHHHhHH
Q 047723 26 AKVGIILLGLV--AVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 26 v~VviIl~vlv--~v~l~~~~lYK~WQKKKR 54 (79)
..+-|++.|++ ++.++++++---+|++||
T Consensus 22 ~aLYFv~gVC~GLlLtLcllV~risc~~r~~ 52 (153)
T PF14851_consen 22 FALYFVSGVCAGLLLTLCLLVIRISCRPRKR 52 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeecccc
Confidence 34445555554 344445555555644433
No 455
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=22.78 E-value=1e+02 Score=19.76 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhH
Q 047723 37 AVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKK 53 (79)
++++.+.+.|-++++||
T Consensus 66 alli~~~~G~g~y~~~k 82 (84)
T PF09716_consen 66 ALLIATALGYGYYKKKK 82 (84)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 33445555666666665
No 456
>PF13994 PgaD: PgaD-like protein
Probab=22.67 E-value=89 Score=21.25 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 047723 37 AVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
++++++=.-|..|+-+++++.+
T Consensus 75 a~~Li~Wa~yn~~Rf~~~~rr~ 96 (138)
T PF13994_consen 75 AVILILWAKYNRLRFRGRRRRR 96 (138)
T ss_pred HHHHHHHHHHHHHHhcchhhcc
Confidence 4445555556666555554443
No 457
>PF05307 Bundlin: Bundlin; InterPro: IPR007971 This family consists of several bundlin proteins from Escherichia coli. Bundlin is a type IV pilin protein that is the only known structural component of enteropathogenic E. coli bundle-forming pili (BFP). BFP play a role in virulence, antigenicity, autoaggregation, and localised adherence to epithelial cells [].; GO: 0009289 pilus; PDB: 3S0T_B 1ZWT_A.
Probab=22.66 E-value=15 Score=25.21 Aligned_cols=31 Identities=6% Similarity=0.022 Sum_probs=4.3
Q ss_pred CCceEehhHHHHH-HHHHHHHHHHHHHHHhHH
Q 047723 24 TGAKVGIILLGLV-AVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 24 tgv~VviIl~vlv-~v~l~~~~lYK~WQKKKR 54 (79)
.+++-++++++++ +++.++++.|--||-..+
T Consensus 14 lSLIE~~mVLai~aiviaGv~~yyq~a~~s~k 45 (97)
T PF05307_consen 14 LSLIEAAMVLAISAIVIAGVMIYYQNASDSNK 45 (97)
T ss_dssp ------------------------S-STCCHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4566667777776 566667778888875443
No 458
>PF14937 DUF4500: Domain of unknown function (DUF4500)
Probab=22.62 E-value=1.5e+02 Score=19.95 Aligned_cols=27 Identities=4% Similarity=0.100 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047723 32 LLGLVAVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
++++.++++.+.++|--|.+-+.|-++
T Consensus 39 iM~~Gl~a~~~c~gYi~Ym~~~~en~~ 65 (86)
T PF14937_consen 39 IMAFGLIAITLCVGYIAYMHATYENKK 65 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344445555556677777766666655
No 459
>COG1289 Predicted membrane protein [Function unknown]
Probab=22.58 E-value=1.3e+02 Score=25.18 Aligned_cols=34 Identities=18% Similarity=0.501 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhc
Q 047723 34 GLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEE 67 (79)
Q Consensus 34 vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEe 67 (79)
+.++-+++++++|..|+.+.-+..-+|.+....+
T Consensus 487 G~lIa~~~a~~v~~~~~~~~l~~~~~~~l~~~~~ 520 (674)
T COG1289 487 GSLIALALAFLVWPLWRPRRLRRALRRALRALRR 520 (674)
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 3345555677799999999999999998876654
No 460
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=22.56 E-value=1.5e+02 Score=20.45 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 047723 33 LGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 33 ~vlv~v~l~~~~lYK~WQKKKR 54 (79)
+.+.+.++++=-.+++||+.|.
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~ 29 (116)
T PTZ00100 8 LTFGGGVLAVRYGYRYLKNQKI 29 (116)
T ss_pred HHHhHHHHHHHHHHHHHHHHhh
Confidence 3333445555567899996554
No 461
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=22.56 E-value=27 Score=27.00 Aligned_cols=31 Identities=29% Similarity=0.205 Sum_probs=16.4
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhh-----cchhhhhhhCC
Q 047723 44 FLFKLWQKKKREEQYARLLKLFE-----EDDELEVELGL 77 (79)
Q Consensus 44 ~lYK~WQKKKREeQ~AR~lkLFE-----edDdle~ELGl 77 (79)
+-+..||.+-+.++|- ..=| +|-|.|.|+|+
T Consensus 432 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 467 (476)
T PLN00028 432 IHFPQWGGMFFGPSKD---AVEEDYYASEWTEEEKEKGL 467 (476)
T ss_pred eeccchhhhhcCCCcc---cchhhhhhcccchhhhhccc
Confidence 3356777754444443 2222 34466777775
No 462
>PF14256 YwiC: YwiC-like protein
Probab=22.51 E-value=1.3e+02 Score=20.59 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 047723 37 AVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKRE 55 (79)
.+.++++-+|=-||||.|.
T Consensus 90 ~~pl~~v~~~~~~~~~eRs 108 (129)
T PF14256_consen 90 FLPLFAVNLYFAKRKRERS 108 (129)
T ss_pred HHHHHHHHHHHHHhcCchh
Confidence 3444455566666666664
No 463
>PF14760 Rnk_N: Rnk N-terminus; PDB: 2PN0_D 3BMB_B.
Probab=22.42 E-value=70 Score=18.09 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhhc--------chhhhhhhC
Q 047723 55 EEQYARLLKLFEE--------DDELEVELG 76 (79)
Q Consensus 55 EeQ~AR~lkLFEe--------dDdle~ELG 76 (79)
+.+++||-+|.+. -+.+|.||+
T Consensus 8 ~~D~~RL~~Ll~~~~~~~~~~~~~L~~EL~ 37 (42)
T PF14760_consen 8 ELDLERLEALLEALSDRDPPVAEALEEELD 37 (42)
T ss_dssp HHHHHHHHHHHCCCCCTTSCCHHHHHHHHH
T ss_pred HhhHHHHHHHHhCccccCCHHHHHHHHHHh
Confidence 5688999999882 246777774
No 464
>PRK09793 methyl-accepting protein IV; Provisional
Probab=22.40 E-value=75 Score=25.45 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=16.0
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHhHH
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKKKR 54 (79)
.+++.+++++.++++++.+|..|+-+.+
T Consensus 12 ~~~~~l~~ll~l~~~~~sl~~~~~~~~~ 39 (533)
T PRK09793 12 FLILILCGILQIGSNGMSFWAFRDDLQR 39 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666777766665543
No 465
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=22.38 E-value=1.8e+02 Score=20.23 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHhhh
Q 047723 32 LLGLVAVGLFSFFLFKLWQKKKREEQYA-RLLKLF 65 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQKKKREeQ~A-R~lkLF 65 (79)
++++.++.++++-.-+-|++|-|+..+- ++|.++
T Consensus 6 ~LIi~a~~~~G~~~a~~~~~R~~~L~~l~~~L~~L 40 (170)
T PF09548_consen 6 ILIIAASSGIGFLYARRLKRRVRQLRELRRALQLL 40 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555566665555443 344443
No 466
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=22.37 E-value=61 Score=26.76 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 047723 35 LVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 35 lv~v~l~~~~lYK~WQKKKR 54 (79)
+++++++++.+|--|..+|+
T Consensus 37 ~~~~~~~~~~~w~~~~~~~~ 56 (376)
T PRK13855 37 GLVLALSLSLIWLGGRSKKE 56 (376)
T ss_pred HHHHHHHHHHHHhccCCCcc
Confidence 33444556666666655554
No 467
>PLN02938 phosphatidylserine decarboxylase
Probab=22.36 E-value=1.2e+02 Score=25.19 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=18.1
Q ss_pred ehhHHHHH---HHHHHHHHHHHHHHHhHHHHHHH
Q 047723 29 GIILLGLV---AVGLFSFFLFKLWQKKKREEQYA 59 (79)
Q Consensus 29 viIl~vlv---~v~l~~~~lYK~WQKKKREeQ~A 59 (79)
.+++++-- ++.++++=.||.+.++|.|+++.
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 75 (428)
T PLN02938 42 SFLLPGATVATLLMLGALHARRLYEDKKVEEARE 75 (428)
T ss_pred eeecCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36666543 44445566677777777555543
No 468
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=22.34 E-value=44 Score=24.70 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=18.4
Q ss_pred cCCCCceEehhHHHHHHHHHHHHHHHHHH
Q 047723 21 RSNTGAKVGIILLGLVAVGLFSFFLFKLW 49 (79)
Q Consensus 21 ~~~tgv~VviIl~vlv~v~l~~~~lYK~W 49 (79)
+-|+-+++++.+.|++.++++.|-++...
T Consensus 116 gY~nklilaisvtvv~~iliii~CLiei~ 144 (154)
T PF14914_consen 116 GYNNKLILAISVTVVVMILIIIFCLIEIC 144 (154)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677777777766666666666655
No 469
>TIGR01709 typeII_sec_gspL general secretion pathway protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=22.34 E-value=2.1e+02 Score=22.06 Aligned_cols=8 Identities=38% Similarity=0.550 Sum_probs=4.1
Q ss_pred HHHhhhhc
Q 047723 60 RLLKLFEE 67 (79)
Q Consensus 60 R~lkLFEe 67 (79)
.+-..|-+
T Consensus 274 ~y~~~FP~ 281 (384)
T TIGR01709 274 TYRQLFPE 281 (384)
T ss_pred HHHHHCCC
Confidence 45555544
No 470
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=22.32 E-value=1.6e+02 Score=24.67 Aligned_cols=27 Identities=7% Similarity=0.156 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 047723 34 GLVAVGLFSFFLFKLWQKKKREEQYAR 60 (79)
Q Consensus 34 vlv~v~l~~~~lYK~WQKKKREeQ~AR 60 (79)
++++++++.++++.+|.|+=|++.+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 136 (566)
T TIGR02759 110 ALAISLVVFLLFMFFFIKRGEQQSKDH 136 (566)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhH
Confidence 334444444555666655554443333
No 471
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=22.30 E-value=2.4e+02 Score=18.51 Aligned_cols=13 Identities=15% Similarity=0.370 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 047723 37 AVGLFSFFLFKLW 49 (79)
Q Consensus 37 ~v~l~~~~lYK~W 49 (79)
++++++++.|-.|
T Consensus 13 vl~L~~~l~~qs~ 25 (110)
T PF10828_consen 13 VLGLGGWLWYQSQ 25 (110)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 472
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=22.30 E-value=1.7e+02 Score=19.89 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 047723 36 VAVGLFSFFLFKLW 49 (79)
Q Consensus 36 v~v~l~~~~lYK~W 49 (79)
++++++..|+||--
T Consensus 20 il~~lL~~fl~kpi 33 (164)
T PRK14473 20 LLIFLLRTFLYRPV 33 (164)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444455433
No 473
>COG2869 NqrC Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC [Energy production and conversion]
Probab=22.27 E-value=98 Score=24.68 Aligned_cols=39 Identities=21% Similarity=0.100 Sum_probs=22.9
Q ss_pred CCCceEehhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 047723 23 NTGAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQYARL 61 (79)
Q Consensus 23 ~tgv~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~ 61 (79)
|..-+--+++++++++.++++++--..--=|--|+++|+
T Consensus 6 ~~ds~~~tllvvl~lsLvcsvivagaav~Lkp~Q~e~~~ 44 (264)
T COG2869 6 NKDSTWGTLLVVLVLSLVCSVIVAGAAVGLKPIQEEQAL 44 (264)
T ss_pred cccCcceeehhHHHHHHHHHHHHhhhheeeChHHHHHHH
Confidence 444555677778888888887765544333333333443
No 474
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=22.24 E-value=1e+02 Score=23.31 Aligned_cols=31 Identities=0% Similarity=0.142 Sum_probs=21.3
Q ss_pred ceEehhHHHHH-HHHHHHHHHHHHHHHhHHHH
Q 047723 26 AKVGIILLGLV-AVGLFSFFLFKLWQKKKREE 56 (79)
Q Consensus 26 v~VviIl~vlv-~v~l~~~~lYK~WQKKKREe 56 (79)
+..+.+-.... ++++-+++.|.|.++|-+..
T Consensus 174 I~eALitTa~GL~vAIPAliayn~f~~ri~~~ 205 (244)
T PRK10414 174 IAEALLATAIGLVAAIPAVVIYNVFARQIGGY 205 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443 77788999999999987653
No 475
>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family. This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.
Probab=22.21 E-value=1.9e+02 Score=23.15 Aligned_cols=14 Identities=14% Similarity=0.086 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhHHH
Q 047723 42 SFFLFKLWQKKKRE 55 (79)
Q Consensus 42 ~~~lYK~WQKKKRE 55 (79)
.+++++.||.-+|-
T Consensus 95 l~iL~~~~~~~r~~ 108 (280)
T TIGR00802 95 LVILRNLLRLFRKV 108 (280)
T ss_pred HHHHHHHHHHHHHh
Confidence 67788888776643
No 476
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=22.20 E-value=1.1e+02 Score=23.49 Aligned_cols=17 Identities=0% Similarity=-0.070 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhHH
Q 047723 38 VGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 38 v~l~~~~lYK~WQKKKR 54 (79)
+.++..+.-.+|.+|||
T Consensus 233 ~~~~~~~~~~~~~~~~~ 249 (249)
T PRK15348 233 LLGVGILIGYFCLRRRF 249 (249)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 33333444456666653
No 477
>TIGR02755 TraX_Ftype type-F conjugative transfer system pilin acetylase TraX. TraX is responsible for the acetylation of the F-pilin TraA during conjugative plasmid transfer. The purpose of this acetylation is unclear, but the reported transcriptional regulation of TraX may indicate that it is involved in the process of pilu extension/retraction.
Probab=22.17 E-value=1.2e+02 Score=23.09 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 047723 38 VGLFSFFLFKLWQKKKREEQYAR 60 (79)
Q Consensus 38 v~l~~~~lYK~WQKKKREeQ~AR 60 (79)
.+++..+.|.+||-|+||.+++-
T Consensus 136 Gvlli~~~y~~~~~r~~~~~~~~ 158 (224)
T TIGR02755 136 GLLMLAGALRLYRVRDTEERLAL 158 (224)
T ss_pred HHHHHHHHHHHHHHhccHHHHHH
Confidence 34456667889999999999873
No 478
>PRK10332 hypothetical protein; Provisional
Probab=22.16 E-value=2.7e+02 Score=19.14 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=13.7
Q ss_pred CCCCceEehhHHHHHHHHHHHHHHHHH
Q 047723 22 SNTGAKVGIILLGLVAVGLFSFFLFKL 48 (79)
Q Consensus 22 ~~tgv~VviIl~vlv~v~l~~~~lYK~ 48 (79)
...|-.++=++++++++++.++.++++
T Consensus 7 ~q~GFsL~EvlvAm~i~~i~~~al~~~ 33 (107)
T PRK10332 7 NQRGFSLPEVLLAMVLMVMIVTALSGY 33 (107)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555444455555544
No 479
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=22.11 E-value=1.8e+02 Score=24.64 Aligned_cols=37 Identities=8% Similarity=0.149 Sum_probs=20.3
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQYAR 60 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR 60 (79)
...-+....+.++++++++.+.++++++......+++
T Consensus 238 ~~~Rl~l~~~~~~~~~~~~~l~~~~~~~~~~l~~r~~ 274 (828)
T PRK13837 238 RRVRLFLGAVSVALLGYIISLVLRLRARTRVLRRRAA 274 (828)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555666666677777765544444444
No 480
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=22.07 E-value=1.9e+02 Score=22.94 Aligned_cols=29 Identities=31% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHH-----HHHHHHHHHHHHHHHhHHHHHHHH
Q 047723 32 LLGLV-----AVGLFSFFLFKLWQKKKREEQYAR 60 (79)
Q Consensus 32 l~vlv-----~v~l~~~~lYK~WQKKKREeQ~AR 60 (79)
+++|+ ++.+++-.+|-+||+-+...|.|+
T Consensus 18 algLvGGp~Gl~ml~AgA~Y~~yQ~~EQAr~~A~ 51 (301)
T PF06120_consen 18 ALGLVGGPPGLVMLGAGAWYYFYQNAEQARQEAI 51 (301)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=22.05 E-value=42 Score=20.45 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=0.0
Q ss_pred CceEehhHHHHHHHHHHHHHH
Q 047723 25 GAKVGIILLGLVAVGLFSFFL 45 (79)
Q Consensus 25 gv~VviIl~vlv~v~l~~~~l 45 (79)
|+.+++.+.++.+.++.+|++
T Consensus 8 GviLliaitVilaavv~~~~~ 28 (80)
T PF07790_consen 8 GVILLIAITVILAAVVGAFVF 28 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
No 482
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=22.04 E-value=1.3e+02 Score=20.67 Aligned_cols=24 Identities=13% Similarity=0.431 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKKR 54 (79)
++..++..+...+++|-+++|||+
T Consensus 60 ~~~~~~~~~~~l~~~~lffkr~~~ 83 (149)
T PF10754_consen 60 VAINIAMWLFTLWLLYLFFKRKRR 83 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHccch
No 483
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=22.00 E-value=1.1e+02 Score=15.83 Aligned_cols=18 Identities=22% Similarity=0.617 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 047723 33 LGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 33 ~vlv~v~l~~~~lYK~WQKKK 53 (79)
.++....+++++. |++||
T Consensus 8 ~~l~~~gl~~l~~---~rrRr 25 (25)
T PF07589_consen 8 LALLGLGLLGLAF---ARRRR 25 (25)
T ss_pred HHHHHHHHHHHHH---HhccC
No 484
>PF07253 Gypsy: Gypsy protein; InterPro: IPR009882 This family consists of several Gypsy/Env proteins from Drosophila and Ceratitis fruit fly species. Gypsy is an endogenous retrovirus of Drosophila melanogaster. Phylogenetic studies suggest that occasional horizontal transfer events of gypsy occur between Drosophila species. Gypsy possesses infective properties associated with the products of the envelope gene that might be at the origin of these interspecies transfers [].
Probab=21.94 E-value=1.4e+02 Score=25.34 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=0.0
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcchh
Q 047723 29 GIILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDE 70 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedDd 70 (79)
+++.+++.++++.++++|..=+|||.-.+-+.-+|-|+--+|
T Consensus 420 l~~gv~l~~~Ii~~i~~~~~~r~~r~~~~~~~~~~~~~~~~d 461 (472)
T PF07253_consen 420 LVFGVLLSIMIIIIIALILMLRKKRQKAQIQQSIKTINSTED 461 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCc
No 485
>PF14142 YrzO: YrzO-like protein
Probab=21.92 E-value=2e+02 Score=17.42 Aligned_cols=36 Identities=28% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhc
Q 047723 32 LLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEE 67 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEe 67 (79)
++.+.++.+.+=.+------||+-.|||.++.|..|
T Consensus 5 llff~a~gvacelaainrngrk~ikqqaeliqllke 40 (46)
T PF14142_consen 5 LLFFFAAGVACELAAINRNGRKKIKQQAELIQLLKE 40 (46)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
No 486
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=21.92 E-value=1.9e+02 Score=24.41 Aligned_cols=49 Identities=14% Similarity=0.336 Sum_probs=0.0
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcchhh---------hhhhC
Q 047723 28 VGIILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDEL---------EVELG 76 (79)
Q Consensus 28 VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedDdl---------e~ELG 76 (79)
++++++++++++++++++|-.|-.+.=..-....-++.+.+.++ .||+|
T Consensus 408 l~~~~l~illi~~li~~~~a~~i~~pI~~L~~~~~~i~~~~Gdl~~~i~~~~~~DEIg 465 (703)
T TIGR03785 408 LFNVILAIMSIGTLALFGFASWISWRIRRLSDDAEAAIDSQGRISGAIPASRSRDEIG 465 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCChHHHH
No 487
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=21.90 E-value=2.1e+02 Score=17.66 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=0.0
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcc
Q 047723 28 VGIILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEED 68 (79)
Q Consensus 28 VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEed 68 (79)
+.+++.+++.++++.|...=+++-+|.=.+-.+.++-.+++
T Consensus 1 Ia~lI~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~ 41 (90)
T PF06103_consen 1 IAGLIAAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQ 41 (90)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 488
>PF09777 OSTMP1: Osteopetrosis-associated transmembrane protein 1 precursor; InterPro: IPR019172 Osteopetrosis-associated transmembrane protein 1 (OSTM1) is required for osteoclast and melanocyte maturation and function. Mutations in OSTM1 give rise to autosomal recessive osteopetrosis, also called autosomal recessive Albers-Schonberg disease [, ].
Probab=21.85 E-value=26 Score=26.39 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=0.0
Q ss_pred ccccccccCCCCceEehhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 047723 14 SAAHHTSRSNTGAKVGIILLGLVAVGLFSFFLFKLWQKKKREE 56 (79)
Q Consensus 14 ~~~~~~~~~~tgv~VviIl~vlv~v~l~~~~lYK~WQKKKREe 56 (79)
+.++.......+..+++.++++...++|=+..|-.=++|||++
T Consensus 179 ~~~~~~~~~~~~~~i~v~~~vl~lpv~FY~~s~~~~~~~~r~l 221 (237)
T PF09777_consen 179 SVPCKDEVPSETAVIAVSVFVLFLPVLFYLSSYLHSERKKRKL 221 (237)
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHhheeeeccccccc
No 489
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=21.84 E-value=1.2e+02 Score=24.10 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=0.0
Q ss_pred CceEehhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 047723 25 GAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQYA 59 (79)
Q Consensus 25 gv~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~A 59 (79)
|+...++++++++++++.+.=||.=+|.+.=|.+|
T Consensus 218 g~~~G~~~L~ll~~lv~~~vr~krk~k~~eMEr~A 252 (278)
T PF06697_consen 218 GVVGGVVLLGLLSLLVAMLVRYKRKKKIEEMERRA 252 (278)
T ss_pred EehHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhh
No 490
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=21.76 E-value=51 Score=20.14 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HHHHHHHHhHHHHHHHHH
Q 047723 34 GLVAVGLFSF-FLFKLWQKKKREEQYARL 61 (79)
Q Consensus 34 vlv~v~l~~~-~lYK~WQKKKREeQ~AR~ 61 (79)
.+..++++.+ +++=||.++|+.+. +|
T Consensus 9 ~L~~Llllp~~i~~~~~~~~~~~~~--~f 35 (77)
T PF07584_consen 9 YLWLLLLLPLPIIIHYFLRRRRRRV--RF 35 (77)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCc--cc
No 491
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=21.70 E-value=37 Score=22.48 Aligned_cols=31 Identities=32% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 047723 33 LGLVAVGLFSFFLFKLWQKKKREEQYARLLK 63 (79)
Q Consensus 33 ~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lk 63 (79)
+.+.++.+.-+..|-+.+-|||..=+.||-|
T Consensus 47 ~~lf~~G~~Fi~GfI~~RDRKrnkV~pRF~k 77 (77)
T PF11118_consen 47 LLLFAIGVGFIAGFILHRDRKRNKVQPRFRK 77 (77)
T ss_pred HHHHHHHHHHHHhHhheeeccccccchhhcC
No 492
>COG1006 MnhC Multisubunit Na+/H+ antiporter, MnhC subunit [Inorganic ion transport and metabolism]
Probab=21.66 E-value=1.5e+02 Score=20.56 Aligned_cols=21 Identities=14% Similarity=0.513 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQK 51 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQK 51 (79)
|+.+++..+++.+++|+.+++
T Consensus 80 IVIgfa~tal~L~l~~~~y~~ 100 (115)
T COG1006 80 IVIGFATTALALVLAYRAYKE 100 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 493
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=21.64 E-value=23 Score=21.13 Aligned_cols=41 Identities=22% Similarity=0.416 Sum_probs=0.0
Q ss_pred ehhHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHhhhhcch
Q 047723 29 GIILLGLVAVGLFSFFLF--KLWQKKKREEQYARLLKLFEEDD 69 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lY--K~WQKKKREeQ~AR~lkLFEedD 69 (79)
+++.+++++++++.+..| --=+...++-.|-.|++.-+.|.
T Consensus 1 ~~~~ili~~vi~~l~~~~~~~~~~~~~~~i~YS~F~~~l~~g~ 43 (110)
T PF06480_consen 1 IILYILIILVILLLFNFFFFNSNNSQTKEISYSEFLQMLEKGN 43 (110)
T ss_dssp ------------------S------SSEE--HHHHHHTGGGT-
T ss_pred CcceehhHHHHHHHHHHHHhhcccCCCcEECHHHHHHHHHcCC
No 494
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=21.58 E-value=1.9e+02 Score=19.03 Aligned_cols=28 Identities=25% Similarity=0.540 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 047723 32 LLGLVAVGLFSFFLFKLWQKKKREEQYA 59 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQKKKREeQ~A 59 (79)
++.+++++++.++..+..+|+|=++.++
T Consensus 6 ii~i~~~v~~~~~ii~~vr~~~l~~~~~ 33 (115)
T PF10066_consen 6 IILIIIAVLFLLFIIRLVRKRKLRLKYS 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHH
No 495
>COG5085 Predicted membrane protein [Function unknown]
Probab=21.46 E-value=86 Score=24.56 Aligned_cols=35 Identities=23% Similarity=0.076 Sum_probs=0.0
Q ss_pred CCceEehhHHHHH-HHHHHHHHHHHHHHHhHHHHHH
Q 047723 24 TGAKVGIILLGLV-AVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 24 tgv~VviIl~vlv-~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
+.++..|++.+++ +++++===+=-.|.-+|+|+|+
T Consensus 91 Naiv~~iilyf~~kfi~glQnDv~~k~e~rk~e~q~ 126 (230)
T COG5085 91 NAIVIGIILYFVVKFIVGLQNDVGYKMESRKAEIQH 126 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>KOG4503 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=21.46 E-value=86 Score=24.56 Aligned_cols=35 Identities=23% Similarity=0.076 Sum_probs=0.0
Q ss_pred CCceEehhHHHHH-HHHHHHHHHHHHHHHhHHHHHH
Q 047723 24 TGAKVGIILLGLV-AVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 24 tgv~VviIl~vlv-~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
+.++..|++.+++ +++++===+=-.|.-+|+|+|+
T Consensus 91 Naiv~~iilyf~~kfi~glQnDv~~k~e~rk~e~q~ 126 (230)
T KOG4503|consen 91 NAIVIGIILYFVVKFIVGLQNDVGYKMESRKAEIQH 126 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=21.42 E-value=1.1e+02 Score=23.40 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKKREE 56 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKKREe 56 (79)
.+...+++.++..+.|+.|.|+|++.
T Consensus 411 ~~~~~~~~~~~~~~~~~l~~~~~~~~ 436 (442)
T TIGR00908 411 VVVGAVAIFVVLIGYYFLYSRHHLVS 436 (442)
T ss_pred HHHHHHHHHHHHHHHHHhhhhchhhc
No 498
>PRK04098 sec-independent translocase; Provisional
Probab=21.35 E-value=1.7e+02 Score=21.47 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHHHhhhhcchhhhhhhCCCC
Q 047723 32 LLGLVAVGLFSFF----------LFKLWQKKKREEQYARLLKLFEEDDELEVELGLRD 79 (79)
Q Consensus 32 l~vlv~v~l~~~~----------lYK~WQKKKREeQ~AR~lkLFEedDdle~ELGl~~ 79 (79)
++++++++++.|+ +-|..++=||....++ ++++.|+++.+
T Consensus 9 llvI~vVaLlvfGP~KLP~~~r~lGk~ir~~K~~~~~~k--------~~l~~Ei~~~e 58 (158)
T PRK04098 9 ILVILVVAIIFLGPDKLPQAMVDIAKFFKAVKKTINDAK--------STLDKEINIEE 58 (158)
T ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhHH
No 499
>PF13548 DUF4126: Domain of unknown function (DUF4126)
Probab=21.24 E-value=99 Score=22.55 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=0.0
Q ss_pred EehhHHHHH--HHHHHHHHHHHHHHH
Q 047723 28 VGIILLGLV--AVGLFSFFLFKLWQK 51 (79)
Q Consensus 28 VviIl~vlv--~v~l~~~~lYK~WQK 51 (79)
+++..|+++ +++++.+++++.|+|
T Consensus 150 lai~~P~la~~~~~~~l~~~~~~~~r 175 (177)
T PF13548_consen 150 LAIFHPVLALVLVVLLLLLAIRLLRR 175 (177)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHh
No 500
>PRK13706 conjugal transfer pilus acetylation protein TraX; Provisional
Probab=21.20 E-value=1.3e+02 Score=23.52 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q 047723 36 VAVGLFSFFLFKLWQKKKREEQYA 59 (79)
Q Consensus 36 v~v~l~~~~lYK~WQKKKREeQ~A 59 (79)
...+++..+.|.+||-|+||.++.
T Consensus 158 ~~gvl~il~fy~~~~~r~~~~~~~ 181 (248)
T PRK13706 158 IAGLLMLAVSHRLYRAEDRAERLA 181 (248)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHH
Done!