Query 047723
Match_columns 79
No_of_seqs 44 out of 46
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 03:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 96.1 0.00036 1.2E-08 40.8 -1.8 36 20-55 5-40 (44)
2 2ks1_B Epidermal growth factor 95.4 0.013 4.4E-07 33.9 2.9 33 22-54 8-40 (44)
3 2k1k_A Ephrin type-A receptor 93.1 0.021 7.1E-07 32.0 0.3 29 24-52 10-38 (38)
4 2knc_B Integrin beta-3; transm 92.9 0.13 4.3E-06 32.4 3.9 21 30-50 16-36 (79)
5 2jwa_A Receptor tyrosine-prote 87.7 0.31 1.1E-05 28.2 2.1 26 28-53 14-39 (44)
6 2lx0_A Membrane fusion protein 87.0 0.25 8.5E-06 27.2 1.3 21 32-52 12-32 (32)
7 2k9y_A Ephrin type-A receptor 86.0 0.076 2.6E-06 28.8 -1.2 31 21-51 9-39 (41)
8 1oqw_A Fimbrial protein; type 85.0 1.5 5.3E-05 28.3 4.6 34 30-63 8-41 (144)
9 2l6w_A Beta-type platelet-deri 85.2 0.18 6.1E-06 29.0 0.0 19 37-55 20-38 (39)
10 2rdd_B UPF0092 membrane protei 84.6 1.3 4.4E-05 23.9 3.5 26 31-56 6-31 (37)
11 3qf7_D MRE11; ABC-ATPase, ATPa 84.5 0.42 1.4E-05 28.5 1.5 24 43-67 10-33 (50)
12 1s7q_A H-2KB, H-2 class I hist 84.0 0.2 7E-06 37.3 0.0 13 41-53 300-313 (348)
13 2j5l_A Apical membrane antigen 83.0 0.24 8.1E-06 41.4 0.0 45 24-68 510-554 (581)
14 1v54_I STA, cytochrome C oxida 81.9 2.9 0.0001 26.1 4.8 40 34-73 23-62 (73)
15 1cd1_A CD1, MCD1D.1; immunolog 81.7 0.28 9.7E-06 35.6 0.0 28 24-53 283-310 (315)
16 2hi2_A Fimbrial protein; type 80.7 1.3 4.4E-05 28.8 3.0 29 35-63 13-41 (158)
17 3sok_A Fimbrial protein; pilus 80.2 3.3 0.00011 27.2 4.8 34 30-63 8-41 (151)
18 2l9u_A Receptor tyrosine-prote 75.2 4.7 0.00016 23.0 3.8 9 45-53 26-34 (40)
19 1oqw_A Fimbrial protein; type 66.4 18 0.00063 23.1 5.7 35 31-65 6-40 (144)
20 2l8s_A Integrin alpha-1; trans 65.9 6.1 0.00021 23.6 3.1 22 29-50 11-32 (54)
21 2knc_A Integrin alpha-IIB; tra 64.5 6.8 0.00023 23.3 3.1 20 30-49 15-34 (54)
22 1pi7_A VPU protein, U ORF prot 63.7 5.7 0.0002 21.9 2.5 19 37-55 17-35 (36)
23 2knc_A Integrin alpha-IIB; tra 63.3 3.6 0.00012 24.5 1.7 31 24-54 12-43 (54)
24 2l8s_A Integrin alpha-1; trans 62.7 3.7 0.00013 24.6 1.7 31 24-54 9-40 (54)
25 3sok_A Fimbrial protein; pilus 61.1 24 0.00083 22.9 5.6 28 32-59 7-34 (151)
26 2hi2_A Fimbrial protein; type 60.2 13 0.00045 23.9 4.2 35 31-65 6-40 (158)
27 2k1a_A Integrin alpha-IIB; sin 59.9 9.9 0.00034 21.4 3.1 22 29-50 12-33 (42)
28 1iij_A ERBB-2 receptor protein 58.9 1.7 5.8E-05 24.1 -0.3 25 29-53 11-35 (35)
29 3pe5_A Uncharacterized protein 57.5 2.2 7.4E-05 33.7 0.0 25 25-49 35-59 (403)
30 2h3o_A MERF; membrane protein, 52.6 6.5 0.00022 24.1 1.6 12 42-53 45-56 (61)
31 2knc_B Integrin beta-3; transm 52.4 22 0.00075 21.9 4.1 35 26-60 17-55 (79)
32 2k21_A Potassium voltage-gated 49.7 22 0.00075 24.9 4.1 15 49-63 96-110 (138)
33 1scf_A Stem cell factor; steel 49.0 3.6 0.00012 31.6 0.0 24 29-53 217-241 (273)
34 4eiy_A Adenosine receptor A2A/ 46.0 38 0.0013 23.3 4.8 32 27-58 208-239 (447)
35 3bxl_B CAM, voltage-dependent 45.7 19 0.00063 18.9 2.5 17 41-57 4-20 (26)
36 3t5x_B 26S proteasome complex 42.6 5.2 0.00018 25.2 0.0 12 62-73 10-21 (70)
37 3lb6_C IL-13, interleukin-13 r 38.6 6.5 0.00022 28.5 0.0 24 30-53 344-367 (380)
38 1q55_A EP-cadherin, C-cadherin 37.3 7 0.00024 32.4 0.0 10 24-33 704-713 (880)
39 3cx5_I Cytochrome B-C1 complex 37.0 25 0.00085 21.3 2.5 42 30-71 20-61 (65)
40 3gia_A Uncharacterized protein 36.0 7.1 0.00024 27.9 -0.2 9 43-51 413-421 (444)
41 2w1k_A Putative sortase; pilus 35.8 7.7 0.00026 28.3 0.0 17 37-53 234-250 (252)
42 2yev_B Cytochrome C oxidase su 39.8 8.8 0.0003 28.5 0.0 16 37-52 53-68 (337)
43 1s7q_A H-2KB, H-2 class I hist 32.6 9.4 0.00032 28.2 0.0 17 37-53 299-316 (348)
44 4b19_A PEPA1; toxin, toxin apo 32.5 36 0.0012 18.3 2.3 15 39-53 13-27 (30)
45 2jo1_A Phospholemman; FXYD1, N 32.3 14 0.00049 23.3 0.8 24 34-57 25-48 (72)
46 4ev6_A Magnesium transport pro 32.2 32 0.0011 24.9 2.8 12 41-52 325-336 (339)
47 2z73_A Rhodopsin; visual pigme 31.4 35 0.0012 23.9 2.8 20 34-53 213-232 (448)
48 3dvk_B Voltage-dependent R-typ 31.2 41 0.0014 17.0 2.3 14 41-54 8-21 (23)
49 1rz2_A Conserved hypothetical 30.5 9.1 0.00031 27.1 -0.3 28 39-66 23-54 (254)
50 3vou_A ION transport 2 domain 29.6 1.1E+02 0.0038 19.4 5.8 26 48-74 110-135 (148)
51 3b4r_A Putative zinc metallopr 28.9 64 0.0022 22.6 3.9 23 45-67 197-219 (224)
52 3oei_C RELK (toxin RV3358); to 28.7 38 0.0013 21.3 2.4 22 45-67 24-45 (96)
53 2qgu_A Probable signal peptide 28.5 14 0.00048 25.7 0.3 26 41-67 78-103 (211)
54 2kgl_A Mesoderm development ca 28.2 15 0.00052 26.8 0.5 19 55-73 22-40 (195)
55 2jp3_A FXYD domain-containing 28.1 11 0.00036 23.6 -0.3 22 35-56 27-48 (67)
56 3qrx_B Melittin; calcium-bindi 26.9 16 0.00053 19.2 0.3 10 47-56 17-26 (26)
57 1waz_A MERF; protein structure 26.9 54 0.0018 19.1 2.6 12 42-53 33-44 (46)
58 3lay_A Zinc resistance-associa 26.4 27 0.00092 24.4 1.5 14 55-68 70-83 (175)
59 2kv9_B Integrin beta-3; platel 26.2 64 0.0022 20.1 3.1 14 47-60 38-51 (75)
60 3g43_E Voltage-dependent L-typ 26.2 25 0.00087 22.4 1.2 17 41-57 65-81 (81)
61 2kxw_B Sodium channel protein 26.1 20 0.00067 18.5 0.6 13 51-63 1-13 (27)
62 3uon_A Human M2 muscarinic ace 26.0 28 0.00095 24.1 1.5 12 42-53 42-53 (467)
63 2k9j_B Integrin beta-3; transm 25.9 76 0.0026 17.5 3.1 13 38-50 23-35 (43)
64 3fb2_A Spectrin alpha chain, b 22.3 71 0.0024 20.9 2.9 25 44-68 103-127 (218)
65 3kg2_A Glutamate receptor 2; I 22.2 32 0.0011 26.5 1.3 29 28-56 789-817 (823)
66 3eml_A Human adenosine A2A rec 21.6 33 0.0011 23.9 1.2 27 31-57 202-228 (488)
67 1yoc_A Hypothetical protein PA 21.0 83 0.0028 19.7 2.9 29 45-77 6-34 (147)
68 3brv_B NF-kappa-B essential mo 21.0 46 0.0016 20.8 1.6 12 47-58 39-50 (70)
69 1q90_G Cytochrome B6F complex 21.0 86 0.0029 17.5 2.6 22 31-52 9-32 (37)
70 3qz1_A Steroid 21-hydroxylase; 20.6 21 0.00072 25.3 0.0 6 46-51 17-22 (496)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=96.09 E-value=0.00036 Score=40.77 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=24.4
Q ss_pred ccCCCCceEehhHHHHHHHHHHHHHHHHHHHHhHHH
Q 047723 20 SRSNTGAKVGIILLGLVAVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 20 ~~~~tgv~VviIl~vlv~v~l~~~~lYK~WQKKKRE 55 (79)
.+||++.+.+-++.+++++++++...|=||++|++.
T Consensus 5 ~~s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 5 QHARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCCCcceEEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 356666655556666666666777778888887754
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=95.37 E-value=0.013 Score=33.95 Aligned_cols=33 Identities=3% Similarity=-0.035 Sum_probs=23.3
Q ss_pred CCCCceEehhHHHHHHHHHHHHHHHHHHHHhHH
Q 047723 22 SNTGAKVGIILLGLVAVGLFSFFLFKLWQKKKR 54 (79)
Q Consensus 22 ~~tgv~VviIl~vlv~v~l~~~~lYK~WQKKKR 54 (79)
||++.+.+-++.++++++++++..|=||++|++
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCcceEEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 666666666666677777777777888888764
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=93.06 E-value=0.021 Score=31.95 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=17.1
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHh
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKK 52 (79)
.|.+..|++-+++.+++++.++|-+|+||
T Consensus 10 ~GaIAGiVvG~v~gv~li~~l~~~~~rrr 38 (38)
T 2k1k_A 10 GGEIVAVIFGLLLGAALLLGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCceeeeehHHHHHHHHHHHHHHHHeecC
Confidence 45454455555555666666677777654
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=92.91 E-value=0.13 Score=32.35 Aligned_cols=21 Identities=19% Similarity=0.494 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 047723 30 IILLGLVAVGLFSFFLFKLWQ 50 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQ 50 (79)
-++.+++++.++.+++||++.
T Consensus 16 gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444555566666443
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=87.71 E-value=0.31 Score=28.21 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=13.3
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 28 VGIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 28 VviIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
++..+++++++++++...+=||+||+
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhheehhh
Confidence 44444554444445555555566554
No 6
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=87.00 E-value=0.25 Score=27.16 Aligned_cols=21 Identities=48% Similarity=0.759 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 047723 32 LLGLVAVGLFSFFLFKLWQKK 52 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQKK 52 (79)
++.+.....++|-+|||-|||
T Consensus 12 lvalltflafgfwlfkylqkk 32 (32)
T 2lx0_A 12 LVALLTFLAFGFWLFKYLQKK 32 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 333445556677888888765
No 7
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=86.03 E-value=0.076 Score=28.80 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=11.7
Q ss_pred cCCCCceEehhHHHHHHHHHHHHHHHHHHHH
Q 047723 21 RSNTGAKVGIILLGLVAVGLFSFFLFKLWQK 51 (79)
Q Consensus 21 ~~~tgv~VviIl~vlv~v~l~~~~lYK~WQK 51 (79)
+++...+++-++.+++.++++.++.+=+|+|
T Consensus 9 ~~~~~~I~~~vv~Gv~ll~~iv~~~~~~~rR 39 (41)
T 2k9y_A 9 GSGNLAVIGGVAVGVVLLLVLAGVGFFIHRR 39 (41)
T ss_dssp CCSSTHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred CCceEEEEeehhHHHHHHHHHHHHheeEeee
Confidence 3434443333334443333233333334444
No 8
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=84.97 E-value=1.5 Score=28.26 Aligned_cols=34 Identities=3% Similarity=0.057 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKKREEQYARLLK 63 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lk 63 (79)
|++..+++++.+++-.|.-|++|.|..+..+.+.
T Consensus 8 ivi~Ii~il~~ia~p~~~~~~~~~~~~~~~~~~~ 41 (144)
T 1oqw_A 8 IVVAIIGILAAIAIPQYQNYVARSEGASALASVN 41 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556667777777766665555543
No 9
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=85.21 E-value=0.18 Score=28.96 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 047723 37 AVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKRE 55 (79)
++++...+++-+||||-|-
T Consensus 20 i~iisLIiLi~~w~qKPrY 38 (39)
T 2l6w_A 20 LTIISLIILIMLWQKKPRY 38 (39)
Confidence 4455566788899999874
No 10
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=84.60 E-value=1.3 Score=23.92 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKKREE 56 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKKREe 56 (79)
+++.+++++++-|+++|==|||++|.
T Consensus 6 ~l~~v~~~~ifYFl~iRPQ~Kr~K~~ 31 (37)
T 2rdd_B 6 ILMLVVFGLIFYFMILRPQQKRTKEH 31 (37)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444455566677776655544443
No 11
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=84.47 E-value=0.42 Score=28.52 Aligned_cols=24 Identities=54% Similarity=0.816 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhhc
Q 047723 43 FFLFKLWQKKKREEQYARLLKLFEE 67 (79)
Q Consensus 43 ~~lYK~WQKKKREeQ~AR~lkLFEe 67 (79)
|=+||-+- |+|++.+..+||+|||
T Consensus 10 felfkey~-k~r~~~he~l~k~~~e 33 (50)
T 3qf7_D 10 FELFKEYL-KKREENHEKLLKILDE 33 (50)
T ss_dssp HHHHHHHH-HHHCTTHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHhhHHHHHHHHHH
Confidence 45677776 4679999999999986
No 12
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=84.01 E-value=0.2 Score=37.26 Aligned_cols=13 Identities=8% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HhH
Q 047723 41 FSFFLFKLWQ-KKK 53 (79)
Q Consensus 41 ~~~~lYK~WQ-KKK 53 (79)
++++.+-.|+ ||+
T Consensus 300 ~~~~~~~~~~~k~~ 313 (348)
T 1s7q_A 300 GAVVAFVMKMRRRN 313 (348)
T ss_dssp --------------
T ss_pred eeEEEEEEEEEEec
Confidence 3445566788 544
No 13
>2j5l_A Apical membrane antigen 1; malaria vaccine candidate, apical membrane antigen 1, hypothetical protein, immunoglobulin domain; 2.9A {Plasmodium falciparum} SCOP: g.61.1.1 PDB: 1hn6_A
Probab=83.01 E-value=0.24 Score=41.38 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcc
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEED 68 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEed 68 (79)
.-..++||++..++++++...+|++|++++....+.|++.-.+=|
T Consensus 510 ~~~~~ii~~~~~~~~~~a~~~~~~~~k~~~~~~~ydk~~~~~~y~ 554 (581)
T 2j5l_A 510 YDNMKIIIASSAAVAVLATILMVYLYKRKGNAEKYDKMDQPQHYG 554 (581)
T ss_dssp ---------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhcchhccC
Confidence 334555555555566666666777998888888899988765543
No 14
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=81.94 E-value=2.9 Score=26.14 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcchhhhh
Q 047723 34 GLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDELEV 73 (79)
Q Consensus 34 vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedDdle~ 73 (79)
+.+++.+++.++||+---..|-..||.|.|=+.-.+|.|.
T Consensus 23 ~a~~lsl~~~~~~k~~v~~pRK~aYadFYknYD~~k~fer 62 (73)
T 1v54_I 23 GAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEE 62 (73)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCcHHHHHH
Confidence 3334444555567764444555689999998888777764
No 15
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=81.74 E-value=0.28 Score=35.58 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=0.0
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
++.+++.|+++|+++++++ +|=+|++++
T Consensus 283 ~~~i~~~vi~~l~ll~~~~--~~~~~~~~~ 310 (315)
T 1cd1_A 283 VGLIVFIVLIMLVVVGAVV--YYIWRRRSA 310 (315)
T ss_dssp ------------------------------
T ss_pred cceeehhHHHHHHHHHHHH--HhheehhcC
Confidence 4444333334444443333 333355443
No 16
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=80.73 E-value=1.3 Score=28.80 Aligned_cols=29 Identities=3% Similarity=0.070 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 047723 35 LVAVGLFSFFLFKLWQKKKREEQYARLLK 63 (79)
Q Consensus 35 lv~v~l~~~~lYK~WQKKKREeQ~AR~lk 63 (79)
+++++.+++-.|.-|++|.|..+..+.++
T Consensus 13 i~il~~~~~p~~~~~~~~~~~~~~~~~~~ 41 (158)
T 2hi2_A 13 VGILAAVALPAYQDYTARAQVSEAILLAE 41 (158)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 33444445556666666666655555544
No 17
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=80.19 E-value=3.3 Score=27.17 Aligned_cols=34 Identities=9% Similarity=0.146 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKKREEQYARLLK 63 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lk 63 (79)
|++..+++++.+++-.|.-|++|.|..+....++
T Consensus 8 vviaIigiLaaia~p~~~~~~~~~~~~~~~~~~~ 41 (151)
T 3sok_A 8 IVVAIIGILAAFAIPAYNDYIARSQAAEGLTLAD 41 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555556666666666665554444443
No 18
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=75.23 E-value=4.7 Score=22.99 Aligned_cols=9 Identities=22% Similarity=0.874 Sum_probs=5.6
Q ss_pred HHHHHHHhH
Q 047723 45 LFKLWQKKK 53 (79)
Q Consensus 45 lYK~WQKKK 53 (79)
-|-||+-|+
T Consensus 26 tflywrgrr 34 (40)
T 2l9u_A 26 TFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHH
T ss_pred eeEEEcccc
Confidence 355688664
No 19
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=66.39 E-value=18 Score=23.06 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLF 65 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLF 65 (79)
+++|++++.+++.+++-.||.-.+..+.+......
T Consensus 6 llivi~Ii~il~~ia~p~~~~~~~~~~~~~~~~~~ 40 (144)
T 1oqw_A 6 LMIVVAIIGILAAIAIPQYQNYVARSEGASALASV 40 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777666655555554433
No 20
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=65.90 E-value=6.1 Score=23.61 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=10.6
Q ss_pred ehhHHHHHHHHHHHHHHHHHHH
Q 047723 29 GIILLGLVAVGLFSFFLFKLWQ 50 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lYK~WQ 50 (79)
+|++.+++.+.+++.+.|-.|+
T Consensus 11 iIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 11 VILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555553
No 21
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=64.53 E-value=6.8 Score=23.28 Aligned_cols=20 Identities=15% Similarity=0.492 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 047723 30 IILLGLVAVGLFSFFLFKLW 49 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~W 49 (79)
|++.+++.+.+++.+.|-.|
T Consensus 15 Ii~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 15 VLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444454455555
No 22
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=63.66 E-value=5.7 Score=21.92 Aligned_cols=19 Identities=5% Similarity=-0.139 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 047723 37 AVGLFSFFLFKLWQKKKRE 55 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKKRE 55 (79)
+-+++-++.|.-|+|-+|+
T Consensus 17 iaIVVWtiv~ieYrk~~kQ 35 (36)
T 1pi7_A 17 IAIVVWSIVIIEGRGGKKK 35 (36)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3334456677777777664
No 23
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=63.31 E-value=3.6 Score=24.50 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=24.4
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHH-HHHhHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKL-WQKKKR 54 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~-WQKKKR 54 (79)
.-++++-++.++.+++++.+++||. +=||||
T Consensus 12 ~wiIi~svl~GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 4568899999999999999999984 344444
No 24
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=62.73 E-value=3.7 Score=24.57 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=24.0
Q ss_pred CCceEehhHHHHHHHHHHHHHHHHH-HHHhHH
Q 047723 24 TGAKVGIILLGLVAVGLFSFFLFKL-WQKKKR 54 (79)
Q Consensus 24 tgv~VviIl~vlv~v~l~~~~lYK~-WQKKKR 54 (79)
.-++++-++.++.+++++.+++||. +=||||
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALWKIGFFKRPL 40 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 4578888999999999999999984 334443
No 25
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=61.11 E-value=24 Score=22.91 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 047723 32 LLGLVAVGLFSFFLFKLWQKKKREEQYA 59 (79)
Q Consensus 32 l~vlv~v~l~~~~lYK~WQKKKREeQ~A 59 (79)
++|++++++++.+++--||.-.+..+.+
T Consensus 7 lvviaIigiLaaia~p~~~~~~~~~~~~ 34 (151)
T 3sok_A 7 MIVVAIIGILAAFAIPAYNDYIARSQAA 34 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555544444333
No 26
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=60.23 E-value=13 Score=23.90 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLF 65 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLF 65 (79)
+++|++++.+++.+++-.||.-.+..+....+...
T Consensus 6 l~vvi~ii~il~~~~~p~~~~~~~~~~~~~~~~~~ 40 (158)
T 2hi2_A 6 LMIVIAIVGILAAVALPAYQDYTARAQVSEAILLA 40 (158)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 45566677777777777777766655555544433
No 27
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=59.93 E-value=9.9 Score=21.43 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=11.1
Q ss_pred ehhHHHHHHHHHHHHHHHHHHH
Q 047723 29 GIILLGLVAVGLFSFFLFKLWQ 50 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lYK~WQ 50 (79)
+|++.+++.+.+++.+.|-.|+
T Consensus 12 iIi~s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 12 WVLVGVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555553
No 28
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=58.91 E-value=1.7 Score=24.09 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=12.9
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 29 GIILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 29 viIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
+.-++++.++++++....-||++|+
T Consensus 11 aagVvglll~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 11 IATVVGVLLFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHHHHHHHHHTTTTTHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhheEEeecC
Confidence 3334444444444555556777764
No 29
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.38A {Clostridium leptum}
Probab=57.54 E-value=2.2 Score=33.72 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred CceEehhHHHHHHHHHHHHHHHHHH
Q 047723 25 GAKVGIILLGLVAVGLFSFFLFKLW 49 (79)
Q Consensus 25 gv~VviIl~vlv~v~l~~~~lYK~W 49 (79)
.++|+|.|+++.++++.+++++..|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (403)
T 3pe5_A 35 NVIIIILCVVFSGLGGVIVYAHGLL 59 (403)
T ss_dssp -------------------------
T ss_pred ceEEEEehHHHHhhhHHHHHHHHHH
Confidence 4566666566667777888888888
No 30
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=52.58 E-value=6.5 Score=24.10 Aligned_cols=12 Identities=8% Similarity=0.465 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhH
Q 047723 42 SFFLFKLWQKKK 53 (79)
Q Consensus 42 ~~~lYK~WQKKK 53 (79)
++..|-+|++||
T Consensus 45 gl~~Y~~~r~~~ 56 (61)
T 2h3o_A 45 GLTIYAIQRKRQ 56 (61)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh
Confidence 566788887765
No 31
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=52.42 E-value=22 Score=21.92 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=16.2
Q ss_pred ceEehhHHHHHHHHHHHHHH----HHHHHHhHHHHHHHH
Q 047723 26 AKVGIILLGLVAVGLFSFFL----FKLWQKKKREEQYAR 60 (79)
Q Consensus 26 v~VviIl~vlv~v~l~~~~l----YK~WQKKKREeQ~AR 60 (79)
++..|++++++++++.-+.. -|-|+|-.+|+|+|+
T Consensus 17 vi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~~~ 55 (79)
T 2knc_B 17 VMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAK 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44445555555444442222 134444455555554
No 32
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=49.66 E-value=22 Score=24.87 Aligned_cols=15 Identities=40% Similarity=0.727 Sum_probs=8.0
Q ss_pred HHHhHHHHHHHHHHh
Q 047723 49 WQKKKREEQYARLLK 63 (79)
Q Consensus 49 WQKKKREeQ~AR~lk 63 (79)
|++|.|+.=|||.|.
T Consensus 96 W~ek~K~y~q~~~le 110 (138)
T 2k21_A 96 WQEKDKAYVQARVLE 110 (138)
T ss_dssp CCSCCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhhc
Confidence 555555555555553
No 33
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=49.00 E-value=3.6 Score=31.60 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=0.0
Q ss_pred ehhHHHHH-HHHHHHHHHHHHHHHhH
Q 047723 29 GIILLGLV-AVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 29 viIl~vlv-~v~l~~~~lYK~WQKKK 53 (79)
.+.++.+. .+++|+++ --||.||+
T Consensus 217 ~~~l~al~slvigf~~g-a~~wk~k~ 241 (273)
T 1scf_A 217 AMALPALFSLIIGFAFG-ALYWKKRQ 241 (273)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHH-HHhhcccC
Confidence 34455555 33444443 33598887
No 34
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=46.05 E-value=38 Score=23.30 Aligned_cols=32 Identities=9% Similarity=0.140 Sum_probs=20.8
Q ss_pred eEehhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047723 27 KVGIILLGLVAVGLFSFFLFKLWQKKKREEQY 58 (79)
Q Consensus 27 ~VviIl~vlv~v~l~~~~lYK~WQKKKREeQ~ 58 (79)
.+.++++.+++++.-..+.++.|+..++-.++
T Consensus 208 ~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~ 239 (447)
T 4eiy_A 208 FACVLVPLLLMLGVYLRIFLAARRQLADLEDN 239 (447)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34456666666666677778888877665543
No 35
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=45.66 E-value=19 Score=18.90 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhHHHHH
Q 047723 41 FSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 41 ~~~~lYK~WQKKKREeQ 57 (79)
.++.+|-+|++.|.-.+
T Consensus 4 Aa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 4 AAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 45667888876554333
No 36
>3t5x_B 26S proteasome complex subunit DSS1; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} PDB: 1iyj_A 1mje_B 1miu_B
Probab=42.56 E-value=5.2 Score=25.17 Aligned_cols=12 Identities=67% Similarity=0.911 Sum_probs=0.0
Q ss_pred Hhhhhcchhhhh
Q 047723 62 LKLFEEDDELEV 73 (79)
Q Consensus 62 lkLFEedDdle~ 73 (79)
|+++||||+.|+
T Consensus 10 ~~~lEeDDEFEe 21 (70)
T 3t5x_B 10 LGLLEEDDEFEE 21 (70)
T ss_dssp ------------
T ss_pred cCcccccccccc
Confidence 678999999875
No 37
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*
Probab=38.61 E-value=6.5 Score=28.47 Aligned_cols=24 Identities=21% Similarity=-0.040 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhH
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKK 53 (79)
++++++++++++.++..-+|.|+|
T Consensus 344 ~~i~~~~~~~~~l~~~~~~~~k~~ 367 (380)
T 3lb6_C 344 FWLPFGFILILVIFVTGLLLRKPN 367 (380)
T ss_dssp ------------------------
T ss_pred EEhHHHHHHHHHHHHHHHHHhcch
Confidence 333433333333333444455544
No 38
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=37.32 E-value=7 Score=32.44 Aligned_cols=10 Identities=10% Similarity=-0.230 Sum_probs=0.0
Q ss_pred CCceEehhHH
Q 047723 24 TGAKVGIILL 33 (79)
Q Consensus 24 tgv~VviIl~ 33 (79)
++.+++|++.
T Consensus 704 ~~aii~il~~ 713 (880)
T 1q55_A 704 LPIILVILGS 713 (880)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3433434333
No 39
>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
Probab=37.00 E-value=25 Score=21.33 Aligned_cols=42 Identities=10% Similarity=0.131 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcchhh
Q 047723 30 IILLGLVAVGLFSFFLFKLWQKKKREEQYARLLKLFEEDDEL 71 (79)
Q Consensus 30 iIl~vlv~v~l~~~~lYK~WQKKKREeQ~AR~lkLFEedDdl 71 (79)
|++-+++.-..+-.+.=++|...-|..|..-+=.-+|+.+|.
T Consensus 20 I~~gaf~fE~~fd~~~d~iw~~~NkGKlwkDIk~ky~~~~ed 61 (65)
T 3cx5_I 20 IFAGAFVFQTVFDTAITSWYENHNKGKLWKDVKARIAAGDGD 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHHHHCCC----
T ss_pred HHHHHHHHHHHHhHHHHHHHHhccCCCCcccChhhhcCcccc
Confidence 333444455556667788999988888877666666554443
No 40
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=36.04 E-value=7.1 Score=27.89 Aligned_cols=9 Identities=11% Similarity=0.394 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 047723 43 FFLFKLWQK 51 (79)
Q Consensus 43 ~~lYK~WQK 51 (79)
++.|..|++
T Consensus 413 ~~~~~~~~~ 421 (444)
T 3gia_A 413 LIFEIIYRK 421 (444)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 41
>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae}
Probab=35.78 E-value=7.7 Score=28.25 Aligned_cols=17 Identities=29% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhH
Q 047723 37 AVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKKK 53 (79)
+++++.++++|+|++++
T Consensus 234 ~~~~~~~~~~~~~~~~r 250 (252)
T 2w1k_A 234 AFLGILFVLWKLARLLR 250 (252)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44445567899996654
No 42
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=39.85 E-value=8.8 Score=28.47 Aligned_cols=16 Identities=13% Similarity=0.434 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 047723 37 AVGLFSFFLFKLWQKK 52 (79)
Q Consensus 37 ~v~l~~~~lYK~WQKK 52 (79)
+.+++..+++||-+++
T Consensus 53 V~~~~~~~~~~~r~~~ 68 (337)
T 2yev_B 53 VAGSLAYVTWKFRARP 68 (337)
Confidence 3344445556654333
No 43
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=32.55 E-value=9.4 Score=28.24 Aligned_cols=17 Identities=6% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-HHHHhH
Q 047723 37 AVGLFSFFLFK-LWQKKK 53 (79)
Q Consensus 37 ~v~l~~~~lYK-~WQKKK 53 (79)
+.+++++++|| +-+.++
T Consensus 299 ~~~~~~~~~~~~k~~~~~ 316 (348)
T 1s7q_A 299 TGAVVAFVMKMRRRNTGG 316 (348)
T ss_dssp ------------------
T ss_pred heeEEEEEEEEEEecCCC
Confidence 34667889999 887643
No 44
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=32.51 E-value=36 Score=18.27 Aligned_cols=15 Identities=13% Similarity=0.494 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhH
Q 047723 39 GLFSFFLFKLWQKKK 53 (79)
Q Consensus 39 ~l~~~~lYK~WQKKK 53 (79)
.++++-+|-+|-+++
T Consensus 13 sGcivalF~hWL~~r 27 (30)
T 4b19_A 13 SGCAIAFFSYWLSRR 27 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 344555788998764
No 45
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=32.33 E-value=14 Score=23.34 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 047723 34 GLVAVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 34 vlv~v~l~~~~lYK~WQKKKREeQ 57 (79)
++..++.+.+++.++++=|.++.+
T Consensus 25 ~vLfi~GI~iilS~KckCk~~qk~ 48 (72)
T 2jo1_A 25 GILFILGILIVLSRRCRCKFNQQQ 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHcCccccCCCCCC
Confidence 333444445566677765554433
No 46
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=32.17 E-value=32 Score=24.87 Aligned_cols=12 Identities=0% Similarity=0.349 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHh
Q 047723 41 FSFFLFKLWQKK 52 (79)
Q Consensus 41 ~~~~lYK~WQKK 52 (79)
+++++|-+++||
T Consensus 325 ~~~~~~~~fkrk 336 (339)
T 4ev6_A 325 IIMIFVYIFRRS 336 (339)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc
Confidence 333444444444
No 47
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=31.35 E-value=35 Score=23.95 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 047723 34 GLVAVGLFSFFLFKLWQKKK 53 (79)
Q Consensus 34 vlv~v~l~~~~lYK~WQKKK 53 (79)
.+++++.-..+.++.|+.+|
T Consensus 213 ~~ii~~~y~~I~~~l~~~~~ 232 (448)
T 2z73_A 213 ILIIFFCYFNIVMSVSNHEK 232 (448)
T ss_dssp HHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444555666776543
No 48
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=31.21 E-value=41 Score=16.99 Aligned_cols=14 Identities=7% Similarity=0.366 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhHH
Q 047723 41 FSFFLFKLWQKKKR 54 (79)
Q Consensus 41 ~~~~lYK~WQKKKR 54 (79)
.++.++-+|++.|.
T Consensus 8 A~llI~d~~r~~k~ 21 (23)
T 3dvk_B 8 AAMMIMDYYKQSKV 21 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 56778899988774
No 49
>1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, P structure initiative; 1.60A {Bacillus anthracis} SCOP: b.100.1.1 PDB: 2oqz_A* 2oqw_A*
Probab=30.55 E-value=9.1 Score=27.15 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=9.0
Q ss_pred HHHHHHHHHHH----HHhHHHHHHHHHHhhhh
Q 047723 39 GLFSFFLFKLW----QKKKREEQYARLLKLFE 66 (79)
Q Consensus 39 ~l~~~~lYK~W----QKKKREeQ~AR~lkLFE 66 (79)
++++|.+|.+| +.++.++....+-+.+.
T Consensus 23 ~~~l~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 54 (254)
T 1rz2_A 23 GTFFYSVYELGDIFMDYYENRKVMAEAQNIYE 54 (254)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555554 33444455556666664
No 50
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=29.62 E-value=1.1e+02 Score=19.43 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=11.3
Q ss_pred HHHHhHHHHHHHHHHhhhhcchhhhhh
Q 047723 48 LWQKKKREEQYARLLKLFEEDDELEVE 74 (79)
Q Consensus 48 ~WQKKKREeQ~AR~lkLFEedDdle~E 74 (79)
.|++++++ ..++..+..+.-+++|..
T Consensus 110 ~~~~~~~~-~~~~~~~~~~rl~~i~~~ 135 (148)
T 3vou_A 110 ILSNRKKE-TDAYRLEVMEKLEAIEKK 135 (148)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45554433 333434444444444443
No 51
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=28.92 E-value=64 Score=22.59 Aligned_cols=23 Identities=9% Similarity=0.245 Sum_probs=15.5
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhc
Q 047723 45 LFKLWQKKKREEQYARLLKLFEE 67 (79)
Q Consensus 45 lYK~WQKKKREeQ~AR~lkLFEe 67 (79)
.+=.|.--++|+|++++...++.
T Consensus 197 ~~fl~~~a~~e~~~~~~~~~l~~ 219 (224)
T 3b4r_A 197 SLFVYFGAEQESRVVEVETIFKN 219 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC
Confidence 33346666678888888777654
No 52
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=28.72 E-value=38 Score=21.28 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=15.9
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhc
Q 047723 45 LFKLWQKKKREEQYARLLKLFEE 67 (79)
Q Consensus 45 lYK~WQKKKREeQ~AR~lkLFEe 67 (79)
-|++|||.-+ ..+.|+.++.++
T Consensus 24 dl~~w~kldk-~~~krI~~~I~~ 45 (96)
T 3oei_C 24 DFLFWLAADR-KTARRITRLIGE 45 (96)
T ss_dssp HHHHHHHHCH-HHHHHHHHHHHH
T ss_pred HHHHHHhcCH-HHHHHHHHHHHH
Confidence 4678998765 456788888754
No 53
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=28.50 E-value=14 Score=25.73 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhc
Q 047723 41 FSFFLFKLWQKKKREEQYARLLKLFEE 67 (79)
Q Consensus 41 ~~~~lYK~WQKKKREeQ~AR~lkLFEe 67 (79)
.-..+=++|++=- .+||++|.++|++
T Consensus 78 a~~vLG~~wr~at-~~Qr~~F~~~F~~ 103 (211)
T 2qgu_A 78 TQIAMGRFWSQAT-PEQQQQIQDGFKS 103 (211)
T ss_dssp HHHHHGGGTTTSC-HHHHHHHHHHHHH
T ss_pred HHHHHhHhHhhCC-HHHHHHHHHHHHH
Confidence 3444558999766 7789999999974
No 54
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD, WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Probab=28.18 E-value=15 Score=26.77 Aligned_cols=19 Identities=42% Similarity=0.756 Sum_probs=16.2
Q ss_pred HHHHHHHHhhhhcchhhhh
Q 047723 55 EEQYARLLKLFEEDDELEV 73 (79)
Q Consensus 55 EeQ~AR~lkLFEedDdle~ 73 (79)
+.+-.||++-+|||||+|.
T Consensus 22 daDLe~L~~qWEedDelEe 40 (195)
T 2kgl_A 22 DADMARLLEQWEKDDDIEE 40 (195)
T ss_dssp HHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhcCCCCc
Confidence 5677899999999999874
No 55
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=28.12 E-value=11 Score=23.58 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 047723 35 LVAVGLFSFFLFKLWQKKKREE 56 (79)
Q Consensus 35 lv~v~l~~~~lYK~WQKKKREe 56 (79)
+..++.+.+++.++++-|++..
T Consensus 27 vLfi~GI~iilS~kcrCk~~qk 48 (67)
T 2jp3_A 27 LLCIAGIALALSGKCKCRRNHT 48 (67)
T ss_dssp HHHHHHHHHHHTTHHHHHHTCC
T ss_pred HHHHHHHHHHHcCcccccCCCC
Confidence 3344444556677777766443
No 56
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=26.94 E-value=16 Score=19.18 Aligned_cols=10 Identities=40% Similarity=0.843 Sum_probs=7.3
Q ss_pred HHHHHhHHHH
Q 047723 47 KLWQKKKREE 56 (79)
Q Consensus 47 K~WQKKKREe 56 (79)
--|-|+||+|
T Consensus 17 iSWiK~kr~~ 26 (26)
T 3qrx_B 17 ISWIKRKRQQ 26 (26)
T ss_pred HHHHHHHhcC
Confidence 3588999864
No 57
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=26.92 E-value=54 Score=19.09 Aligned_cols=12 Identities=8% Similarity=0.465 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhH
Q 047723 42 SFFLFKLWQKKK 53 (79)
Q Consensus 42 ~~~lYK~WQKKK 53 (79)
+..+|-+|+++|
T Consensus 33 ~lt~ya~~r~~~ 44 (46)
T 1waz_A 33 GLTIYAIQRKRQ 44 (46)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc
Confidence 556799999775
No 58
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.38 E-value=27 Score=24.37 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhhcc
Q 047723 55 EEQYARLLKLFEED 68 (79)
Q Consensus 55 EeQ~AR~lkLFEed 68 (79)
+|||+.+=+|+++-
T Consensus 70 ~EQq~ql~~I~~e~ 83 (175)
T 3lay_A 70 TEQQATAQKIYDDY 83 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67888888887653
No 59
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=26.24 E-value=64 Score=20.13 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=8.4
Q ss_pred HHHHHhHHHHHHHH
Q 047723 47 KLWQKKKREEQYAR 60 (79)
Q Consensus 47 K~WQKKKREeQ~AR 60 (79)
|=|+|=.+|++.|+
T Consensus 38 REyaKFEkEr~~ak 51 (75)
T 2kv9_B 38 KEFAKFEEERARAK 51 (75)
T ss_dssp HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhc
Confidence 45666666666654
No 60
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=26.20 E-value=25 Score=22.43 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhHHHHH
Q 047723 41 FSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 41 ~~~~lYK~WQKKKREeQ 57 (79)
+++.++-||++.|+..|
T Consensus 65 A~llI~d~~r~~k~r~~ 81 (81)
T 3g43_E 65 ATFLIQEYFRKFKKREQ 81 (81)
T ss_dssp HHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHhccC
Confidence 46678888888775443
No 61
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=26.12 E-value=20 Score=18.50 Aligned_cols=13 Identities=38% Similarity=0.526 Sum_probs=9.9
Q ss_pred HhHHHHHHHHHHh
Q 047723 51 KKKREEQYARLLK 63 (79)
Q Consensus 51 KKKREeQ~AR~lk 63 (79)
++|+|+.-|+.++
T Consensus 1 ~rk~Ee~aA~vIQ 13 (27)
T 2kxw_B 1 KRKQEEVSAIVIQ 13 (27)
T ss_dssp CCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 3688998888764
No 62
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=25.98 E-value=28 Score=24.14 Aligned_cols=12 Identities=0% Similarity=0.147 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhH
Q 047723 42 SFFLFKLWQKKK 53 (79)
Q Consensus 42 ~~~lYK~WQKKK 53 (79)
+++++-+|++++
T Consensus 42 ~lvi~~~~~~~~ 53 (467)
T 3uon_A 42 ILVMVSIKVNRH 53 (467)
T ss_dssp HHHHHHHHHCGG
T ss_pred HHheeeeeecCc
Confidence 566677776655
No 63
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=25.94 E-value=76 Score=17.47 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 047723 38 VGLFSFFLFKLWQ 50 (79)
Q Consensus 38 v~l~~~~lYK~WQ 50 (79)
+.++...+||++.
T Consensus 23 iGl~lLliwk~~~ 35 (43)
T 2k9j_B 23 IGLAALLIWKLLI 35 (43)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344445566554
No 64
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=22.33 E-value=71 Score=20.92 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=20.2
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhcc
Q 047723 44 FLFKLWQKKKREEQYARLLKLFEED 68 (79)
Q Consensus 44 ~lYK~WQKKKREeQ~AR~lkLFEed 68 (79)
-+-..|..|++..+++.-|..|..|
T Consensus 103 ~L~~~~~~R~~~L~q~l~l~~F~~d 127 (218)
T 3fb2_A 103 DLEKAWVQRRMMLDQCLELQLFHRD 127 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999998888888654
No 65
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=22.20 E-value=32 Score=26.51 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=0.0
Q ss_pred EehhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 047723 28 VGIILLGLVAVGLFSFFLFKLWQKKKREE 56 (79)
Q Consensus 28 VviIl~vlv~v~l~~~~lYK~WQKKKREe 56 (79)
+.++-+++++++.++=++|+.|++++|..
T Consensus 789 il~~g~~la~~vf~~E~~~~~~~~~~~~~ 817 (823)
T 3kg2_A 789 ILVGGLGLAMLVALIEFCYKSRAEAKRMK 817 (823)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhhhhcc
No 66
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=21.64 E-value=33 Score=23.87 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 047723 31 ILLGLVAVGLFSFFLFKLWQKKKREEQ 57 (79)
Q Consensus 31 Il~vlv~v~l~~~~lYK~WQKKKREeQ 57 (79)
+++.+++++.-..++++.|+.+++.+.
T Consensus 202 ~~P~~ii~~~y~~I~~~l~~~~~~~~~ 228 (488)
T 3eml_A 202 LVPLLLMLGVYLRIFLAARRQLNIFEM 228 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 334444444445666677766665443
No 67
>1yoc_A Hypothetical protein PA1835; structural genomics, PSI, protein structure initiati midwest center for structural genomics, MCSG, sulfur SAD; 1.70A {Pseudomonas aeruginosa} SCOP: d.38.1.5
Probab=21.00 E-value=83 Score=19.70 Aligned_cols=29 Identities=7% Similarity=0.133 Sum_probs=16.7
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhcchhhhhhhCC
Q 047723 45 LFKLWQKKKREEQYARLLKLFEEDDELEVELGL 77 (79)
Q Consensus 45 lYK~WQKKKREeQ~AR~lkLFEedDdle~ELGl 77 (79)
+++.|+|. .+..|-.+|.+.+-.-.-||+
T Consensus 6 ~~~~~~~~----~~~~~~~~~~~~~p~~~~lG~ 34 (147)
T 1yoc_A 6 MMQMYQQV----GPAQFSAMIGQFAPYFASIAP 34 (147)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHSGGGGGGCC
T ss_pred HHHHHHHH----HHHHHHHHHhcccchHHhcCc
Confidence 47899998 333444555554444444554
No 68
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=20.99 E-value=46 Score=20.83 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=9.8
Q ss_pred HHHHHhHHHHHH
Q 047723 47 KLWQKKKREEQY 58 (79)
Q Consensus 47 K~WQKKKREeQ~ 58 (79)
-.||.|+||+..
T Consensus 39 ~~wqekQkeEre 50 (70)
T 3brv_B 39 LHFQASQREEKE 50 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhHHHHH
Confidence 469999999864
No 69
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=20.99 E-value=86 Score=17.47 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=8.7
Q ss_pred hHHHHH--HHHHHHHHHHHHHHHh
Q 047723 31 ILLGLV--AVGLFSFFLFKLWQKK 52 (79)
Q Consensus 31 Il~vlv--~v~l~~~~lYK~WQKK 52 (79)
|+++++ .++.+.+.+|-.++|.
T Consensus 9 IVlGlipvtlaGLfv~Ay~QyrRg 32 (37)
T 1q90_G 9 IVLGLVPVTIAGLFVTAYLQYLRG 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhc
Confidence 444554 3333334455544433
No 70
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=20.55 E-value=21 Score=25.32 Aligned_cols=6 Identities=33% Similarity=0.982 Sum_probs=0.0
Q ss_pred HHHHHH
Q 047723 46 FKLWQK 51 (79)
Q Consensus 46 YK~WQK 51 (79)
+-+|++
T Consensus 17 ~~~~~~ 22 (496)
T 3qz1_A 17 HLLWGR 22 (496)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 334433
Done!