Query 047725
Match_columns 299
No_of_seqs 131 out of 1048
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:29:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06899 lectin_legume_LecRK_Ar 100.0 1.2E-56 2.7E-61 405.7 26.5 228 36-270 1-235 (236)
2 PF00139 Lectin_legB: Legume l 100.0 7.2E-56 1.6E-60 400.6 23.0 228 36-268 2-236 (236)
3 cd01951 lectin_L-type legume l 100.0 6.5E-43 1.4E-47 313.0 24.9 205 45-269 13-223 (223)
4 cd07308 lectin_leg-like legume 100.0 3.2E-26 6.9E-31 204.6 24.6 195 45-269 19-217 (218)
5 cd06902 lectin_ERGIC-53_ERGL E 99.9 1.2E-23 2.5E-28 189.1 24.2 197 46-269 22-223 (225)
6 cd06901 lectin_VIP36_VIPL VIP3 99.9 2.3E-22 5.1E-27 182.9 24.0 202 44-271 18-224 (248)
7 cd06903 lectin_EMP46_EMP47 EMP 99.9 1.2E-20 2.7E-25 168.2 23.2 187 46-269 21-213 (215)
8 PF03388 Lectin_leg-like: Legu 99.9 5.7E-20 1.2E-24 165.7 22.9 195 46-267 22-225 (229)
9 KOG3838 Mannose lectin ERGIC-5 99.8 1.5E-17 3.3E-22 155.6 18.0 193 47-269 55-254 (497)
10 KOG3839 Lectin VIP36, involved 99.7 7.1E-16 1.5E-20 142.2 14.9 190 46-268 72-273 (351)
11 cd06900 lectin_VcfQ VcfQ bacte 99.4 1.5E-11 3.3E-16 109.9 19.7 200 58-267 30-253 (255)
12 smart00282 LamG Laminin G doma 77.3 34 0.00074 27.1 11.4 26 193-220 57-82 (135)
13 KOG3514 Neurexin III-alpha [Si 70.6 34 0.00073 37.7 10.0 151 46-248 804-963 (1591)
14 cd00110 LamG Laminin G domain; 69.5 56 0.0012 26.0 11.7 26 194-221 76-101 (151)
15 PF12248 Methyltransf_FA: Farn 31.8 2.1E+02 0.0045 22.1 6.5 46 195-250 49-94 (102)
16 PF09224 DUF1961: Domain of un 27.9 1.4E+02 0.003 26.9 5.3 62 46-117 18-84 (218)
17 PF07172 GRP: Glycine rich pro 27.6 52 0.0011 25.6 2.3 19 11-29 3-21 (95)
18 smart00159 PTX Pentraxin / C-r 24.2 95 0.0021 27.2 3.7 28 194-221 86-113 (206)
19 smart00560 LamGL LamG-like jel 21.4 1.3E+02 0.0027 24.2 3.6 24 198-221 61-84 (133)
20 cd00152 PTX Pentraxins are pla 20.5 1.2E+02 0.0027 26.3 3.6 27 195-221 87-113 (201)
No 1
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=100.00 E-value=1.2e-56 Score=405.73 Aligned_cols=228 Identities=47% Similarity=0.772 Sum_probs=204.6
Q ss_pred eeEEeCCCCC--CCcEEecceEEcCCCeEEecCCC--CCeEEEEEeCCCeeecC-CCCCccceEEEEEEEEeec--CCCC
Q 047725 36 QGFIYHGFNE--SKLHLEGFSNIQPNGLLQMSNSS--QLTKGHAFYPYPLNFNT-SSPQSLSFSTNFVFAMVPV--NTGG 108 (299)
Q Consensus 36 ~~F~f~~F~~--~~l~l~GdA~v~~~g~l~LT~~~--~~~~G~v~y~~Pi~l~d-~s~~~~sF~t~F~F~I~~~--~~~g 108 (299)
++|+|++|.. ++|.++|+|.+..++.||||++. ++|+|||||++||+||+ .++.++||+|+|+|+|.+. ..+|
T Consensus 1 ~~f~f~~f~~~~~~l~l~G~A~~~~~~~i~LT~~~~~~~~~G~v~y~~pi~l~~~~~~~~~sFst~F~F~i~~~~~~~~g 80 (236)
T cd06899 1 LSFNFNGFSSDQSNLTLQGDATISSNGALQLTNDTSPASSVGRALYSKPVRLWDSTTGKVASFSTSFSFSITPPNPSLGG 80 (236)
T ss_pred CceecCCCCCCCCCEEEecceEcCCCCeEEecCCCCCCcceEEEEeCCCEEeecCCCCCceeEEEEEEEEEEcCCCCCCC
Confidence 4799999985 89999999998658999999999 89999999999999999 7889999999999999976 5789
Q ss_pred cceEEEEccCCCCCccCCCccccCCCCCCCCCCCCcEEEEEEecccccccCCCCCCeEEEecCCCcccCCccCccccCCC
Q 047725 109 HGMAFLFSPSLDLSQALASAHLGLLNSTNNGQSTNHIIAVELDTVQSVEFKDLNGTHVGIDVNSLISNDSAPAAYFSDEG 188 (299)
Q Consensus 109 DGlAF~l~~~~~~~~~~~G~~lGl~~~~~~g~~~~~~vAVEFDT~~n~~~~Dp~~~HVgIdvn~~~s~~t~~~~~~~~~G 188 (299)
|||||||+|++..+.+..|++|||.+.++.+...++.||||||||+|.+++||+.+||||++|++.|..+..+..
T Consensus 81 dGlAF~i~~~~~~~~~~~G~~lG~~~~~~~~~~~~~~vAVEFDT~~n~~~~D~~~nHigIdvn~~~S~~~~~~~~----- 155 (236)
T cd06899 81 DGLAFFLAPTDSLPPASSGGYLGLFNSSNNGNSSNHIVAVEFDTFQNPEFGDPDDNHVGIDVNSLVSVKAGYWDD----- 155 (236)
T ss_pred CeEEEEEecCCCCCCCCCcceeeeecCCCCCCcccceEEEEeecccCcccCCCCCCeEEEEcCCcccceeecccc-----
Confidence 999999999876555678999999988766556789999999999999888999999999999987766544431
Q ss_pred ceeeeecCCCCcEEEEEEeeCCCcEEEEEEeecCCCCCCcceEEEeecCCcCCCCeeEEEEEeecCCceeceEEEEEEEE
Q 047725 189 SYISLDLQSGNPMQIWIDYNGEERLLNVTLAPIRVSKPNRPLLSTPLDLSQILLDTMYVGFSASTGILKSNQYILGWSFS 268 (299)
Q Consensus 189 ~~~~~~l~~G~~~~v~I~Y~~~~~~L~V~l~~~~~~~p~~~~ls~~vdL~~~l~~~vyvGFSAsTG~~~~~h~I~sWsF~ 268 (299)
..+.|.+|+.++|||+|++.+++|+|+|+..+..+|.++++++.+||+.+|+++|||||||+||+..|.|+|++|+|+
T Consensus 156 --~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~~~~vGFSasTG~~~~~h~i~sWsF~ 233 (236)
T cd06899 156 --DGGKLKSGKPMQAWIDYDSSSKRLSVTLAYSGVAKPKKPLLSYPVDLSKVLPEEVYVGFSASTGLLTELHYILSWSFS 233 (236)
T ss_pred --ccccccCCCeEEEEEEEcCCCCEEEEEEEeCCCCCCcCCEEEEeccHHHhCCCceEEEEEeEcCCCcceEEEEEEEEE
Confidence 124588999999999999999999999998876688999999999999999999999999999999999999999999
Q ss_pred ec
Q 047725 269 RS 270 (299)
Q Consensus 269 s~ 270 (299)
+.
T Consensus 234 s~ 235 (236)
T cd06899 234 SN 235 (236)
T ss_pred cC
Confidence 85
No 2
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=100.00 E-value=7.2e-56 Score=400.61 Aligned_cols=228 Identities=41% Similarity=0.687 Sum_probs=200.4
Q ss_pred eeEEeCCC-CCCCcEEecceEEcCCCeEEecCCCC-CeEEEEEeCCCeeecC-CCCCccceEEEEEEEEee---c-CCCC
Q 047725 36 QGFIYHGF-NESKLHLEGFSNIQPNGLLQMSNSSQ-LTKGHAFYPYPLNFNT-SSPQSLSFSTNFVFAMVP---V-NTGG 108 (299)
Q Consensus 36 ~~F~f~~F-~~~~l~l~GdA~v~~~g~l~LT~~~~-~~~G~v~y~~Pi~l~d-~s~~~~sF~t~F~F~I~~---~-~~~g 108 (299)
.+|+|++| +..+|+++|+|.+..++.||||++.. +|+|||||++||+||| .++.+++|+|+|+|+|.. . ..+|
T Consensus 2 ~~F~~~~F~~~~~~~l~G~A~~~~~~~l~LT~~~~~~~~G~~~y~~pi~l~d~~~~~~~sF~t~F~f~i~~~~~~~~~~~ 81 (236)
T PF00139_consen 2 VSFSFPSFSNSSNLTLNGDASISSNGSLQLTPDSTNNQAGRAWYNNPIQLWDSTTGNVASFSTSFSFSITNGPGSSNNGG 81 (236)
T ss_dssp EEEEESSBTTGTTEEEEETEEEETTSEEESSTBETSSEEEEEEESSEEESBETTTTEBEEEEEEEEEEEEESSSSSSS-B
T ss_pred ceEEcCCCCCCCceEEEeeEEeccCCeEEcCCCCCCCcEEEEEECCcEEEeCCCCcceeeeeeEEEEEEeccCCCCccCC
Confidence 68999999 57999999999986689999999988 9999999999999999 778899999999999953 2 7789
Q ss_pred cceEEEEccCCCCCccCCCccccCCCCCCCCCCCCcEEEEEEecccccccCCCCCCeEEEecCCCcccCCccCccccCCC
Q 047725 109 HGMAFLFSPSLDLSQALASAHLGLLNSTNNGQSTNHIIAVELDTVQSVEFKDLNGTHVGIDVNSLISNDSAPAAYFSDEG 188 (299)
Q Consensus 109 DGlAF~l~~~~~~~~~~~G~~lGl~~~~~~g~~~~~~vAVEFDT~~n~~~~Dp~~~HVgIdvn~~~s~~t~~~~~~~~~G 188 (299)
|||||+|+|++..+.+..|++||+.+..+++...++.||||||||+|++++||+.+||||++|++.+..+.+++++.
T Consensus 82 dGlAFvi~~~~~~~~~~~g~~lG~~~~~~~~~~~~~~vAVEFDT~~N~~~~d~~~nHIgI~~n~~~s~~~~~~~~~~--- 158 (236)
T PF00139_consen 82 DGLAFVIQPDPNLPGGSSGGYLGLFNSSTDGNGINNSVAVEFDTYKNPEYNDPDDNHIGIDVNSVVSNKTASAGYYS--- 158 (236)
T ss_dssp EEEEEEEEETTSSTTTSSGGGTTTSSSSSTTGGGGCEEEEEEETSTCGGGTTTSSSEEEEEESSSSESEEEE----E---
T ss_pred CceEEEEecCcccccCCCCCccCccccccCCCccCcEEEEEEeeeecccccccCCCEEEEECCCCcccccccccccc---
Confidence 99999999998666667899999998776665678999999999999999999999999999999887765554331
Q ss_pred ceeeeecCCCCcEEEEEEeeCCCcEEEEEEeecCCCCCCcceEEEeecCCcCCCCeeEEEEEeecCCceeceEEEEEEEE
Q 047725 189 SYISLDLQSGNPMQIWIDYNGEERLLNVTLAPIRVSKPNRPLLSTPLDLSQILLDTMYVGFSASTGILKSNQYILGWSFS 268 (299)
Q Consensus 189 ~~~~~~l~~G~~~~v~I~Y~~~~~~L~V~l~~~~~~~p~~~~ls~~vdL~~~l~~~vyvGFSAsTG~~~~~h~I~sWsF~ 268 (299)
....++.+|+.++|||+|++.+++|+|+++... .+|..+++++.+||+++++++||||||||||...|.|+|++|+|+
T Consensus 159 -~~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~~~-~~~~~~~l~~~vdL~~~l~~~v~vGFsasTG~~~~~h~I~sW~F~ 236 (236)
T PF00139_consen 159 -SPSFSLSDGKWHTVWIDYDASTKRLSVYLDDNS-SKPSSPVLSVNVDLSAVLPEQVYVGFSASTGGSYQTHDILSWSFS 236 (236)
T ss_dssp -EEEHHHGTTSEEEEEEEEETTTTEEEEEEEETT-TTSEEEEEEEE--HHHHSCSEEEEEEEEEESSSSEEEEEEEEEEE
T ss_pred -cccccccCCcEEEEEEEEcCCccEEEEEEeccc-CCCcceeEEEEEchHHhcCCCcEEEEEeecCCCcceEEEEEEEeC
Confidence 245689999999999999999999999999874 588899999999999999999999999999999999999999996
No 3
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=100.00 E-value=6.5e-43 Score=313.05 Aligned_cols=205 Identities=28% Similarity=0.429 Sum_probs=170.2
Q ss_pred CCCcEEecceEEcC-CCeEEecCCCCCeEEEEEeCCCeeecCCCCCccceEEEEEEEEeec-CCCCcceEEEEccCCCCC
Q 047725 45 ESKLHLEGFSNIQP-NGLLQMSNSSQLTKGHAFYPYPLNFNTSSPQSLSFSTNFVFAMVPV-NTGGHGMAFLFSPSLDLS 122 (299)
Q Consensus 45 ~~~l~l~GdA~v~~-~g~l~LT~~~~~~~G~v~y~~Pi~l~d~s~~~~sF~t~F~F~I~~~-~~~gDGlAF~l~~~~~~~ 122 (299)
..+|.++|+|.+.. ++.||||++..+|+|+|||++||++| ++|+++|+|+|... ..+||||||+|++.+..+
T Consensus 13 ~~~~~~~G~A~~~~~~~~l~Lt~~~~~~~G~~~~~~~i~~~------~~F~~~F~f~i~~~~~~~gdG~aF~l~~~~~~~ 86 (223)
T cd01951 13 QSNWQLNGSATLTTDSGVLRLTPDTGNQAGSAWYKTPIDLS------KDFTTTFKFYLGTKGTNGADGIAFVLQNDPAGA 86 (223)
T ss_pred hhhcEEcccEEecCCCCEEEECCCCCCcEEEEEECCcEecc------CCEEEEEEEEEeCCCCCCCCcEEEEEecCCCCc
Confidence 46899999999864 78999999999999999999999997 49999999999976 678999999999986544
Q ss_pred ccCCC--ccccCCCCCCCCCCCCcEEEEEEecccccccCCCCCCeEEEecCCCcccC--CccCccccCCCceeeeecCCC
Q 047725 123 QALAS--AHLGLLNSTNNGQSTNHIIAVELDTVQSVEFKDLNGTHVGIDVNSLISND--SAPAAYFSDEGSYISLDLQSG 198 (299)
Q Consensus 123 ~~~~G--~~lGl~~~~~~g~~~~~~vAVEFDT~~n~~~~Dp~~~HVgIdvn~~~s~~--t~~~~~~~~~G~~~~~~l~~G 198 (299)
.+..| ++||+. ...+.+|||||||+|.+++||+.+||||++|+..+.. ..+..+.. .+....+|
T Consensus 87 ~~~~g~~~~lG~~-------~~~~~~aVefDT~~N~~~~dp~~~higi~~n~~~~~~~~~~~~~~~~-----~~~~~~~g 154 (223)
T cd01951 87 LGGGGGGGGLGYG-------GIGNSVAVEFDTYKNDDNNDPNGNHISIDVNGNGNNTALATSLGSAS-----LPNGTGLG 154 (223)
T ss_pred cccCCCCCccCcc-------ccCCeEEEEEeccccCCCCCCCCCEEEEEcCCCCCCcccccccceee-----CCCccCCC
Confidence 44444 788874 3468999999999999878999999999999886531 11112111 01112238
Q ss_pred CcEEEEEEeeCCCcEEEEEEeecCCCCCCcceEEEeecCCcCCCCeeEEEEEeecCCceeceEEEEEEEEe
Q 047725 199 NPMQIWIDYNGEERLLNVTLAPIRVSKPNRPLLSTPLDLSQILLDTMYVGFSASTGILKSNQYILGWSFSR 269 (299)
Q Consensus 199 ~~~~v~I~Y~~~~~~L~V~l~~~~~~~p~~~~ls~~vdL~~~l~~~vyvGFSAsTG~~~~~h~I~sWsF~s 269 (299)
+.++|||+|++.+++|+|+++.... |..++++..+||..+++++||||||||||...|.|+|++|+|++
T Consensus 155 ~~~~v~I~Y~~~~~~L~v~l~~~~~--~~~~~l~~~~~l~~~~~~~~yvGFTAsTG~~~~~h~V~~wsf~~ 223 (223)
T cd01951 155 NEHTVRITYDPTTNTLTVYLDNGST--LTSLDITIPVDLIQLGPTKAYFGFTASTGGLTNLHDILNWSFTS 223 (223)
T ss_pred CEEEEEEEEeCCCCEEEEEECCCCc--cccccEEEeeeecccCCCcEEEEEEcccCCCcceeEEEEEEecC
Confidence 9999999999999999999987553 66789999999999999999999999999999999999999963
No 4
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47. The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "ba
Probab=99.95 E-value=3.2e-26 Score=204.64 Aligned_cols=195 Identities=20% Similarity=0.234 Sum_probs=141.5
Q ss_pred CCCcEEecceEEcCCCeEEecCCCCCeEEEEEeCCCeeecCCCCCccceEEEEEEEEeec-CCCCcceEEEEccCCCCCc
Q 047725 45 ESKLHLEGFSNIQPNGLLQMSNSSQLTKGHAFYPYPLNFNTSSPQSLSFSTNFVFAMVPV-NTGGHGMAFLFSPSLDLSQ 123 (299)
Q Consensus 45 ~~~l~l~GdA~v~~~g~l~LT~~~~~~~G~v~y~~Pi~l~d~s~~~~sF~t~F~F~I~~~-~~~gDGlAF~l~~~~~~~~ 123 (299)
..+|.+.|+|.+. ++.||||++.+++.|++||+.|+++ .+|+++|+|+|.+. ..+||||||||++++.
T Consensus 19 ~~~w~~~G~a~~~-~~~i~LT~~~~~~~G~~~~~~pi~~-------~~F~~~f~F~i~~~~~~~gdG~af~~~~~~~--- 87 (218)
T cd07308 19 IGNWTVGGSTVIT-KNYIRLTPDVPSQSGSLWSRVPIPA-------KDFEIEVEFSIHGGSGLGGDGFAFWYTEEPG--- 87 (218)
T ss_pred cCCeEEcCCeEEe-CCEEEeCCCCCCCEeEEEeCCCccC-------CCEEEEEEEEEeCCCCCCCCEEEEEEECCCC---
Confidence 3689999999986 8999999999999999999999997 38999999999876 6789999999999654
Q ss_pred cCCCccccCCCCCCCCCCCCcEEEEEEecccccccCCCCCCeEEEecCCCc-ccCC-ccCccccCCCceeeeecCC-CCc
Q 047725 124 ALASAHLGLLNSTNNGQSTNHIIAVELDTVQSVEFKDLNGTHVGIDVNSLI-SNDS-APAAYFSDEGSYISLDLQS-GNP 200 (299)
Q Consensus 124 ~~~G~~lGl~~~~~~g~~~~~~vAVEFDT~~n~~~~Dp~~~HVgIdvn~~~-s~~t-~~~~~~~~~G~~~~~~l~~-G~~ 200 (299)
..|+.+|..+ ..+++||||||+.|. +...++|.+.+|.-. +... .........+. .+...+ +.+
T Consensus 88 -~~g~~~G~~~-------~~~Glai~fdt~~n~---~~~~p~i~~~~Ndg~~~~~~~~d~~~~~~~~c--~~~~~~~~~~ 154 (218)
T cd07308 88 -SDGPLFGGPD-------KFKGLAIFFDTYDND---GKGFPSISVFLNDGTKSYDYETDGEKLELASC--SLKFRNSNAP 154 (218)
T ss_pred -CCCcccccCC-------CCCEEEEEEEcCCCC---CCCCCeEEEEEeCCCceecccCCCccccccce--eEecccCCCC
Confidence 2355666643 357999999999985 234457777666322 2110 00000000011 122222 578
Q ss_pred EEEEEEeeCCCcEEEEEEeecCCCCCCcceEEEeecCCcCCCCeeEEEEEeecCCceeceEEEEEEEEe
Q 047725 201 MQIWIDYNGEERLLNVTLAPIRVSKPNRPLLSTPLDLSQILLDTMYVGFSASTGILKSNQYILGWSFSR 269 (299)
Q Consensus 201 ~~v~I~Y~~~~~~L~V~l~~~~~~~p~~~~ls~~vdL~~~l~~~vyvGFSAsTG~~~~~h~I~sWsF~s 269 (299)
.+++|.|+ .+.|+|.+.... +..+..+..++. ..+++..|+||||+||+..+.|+|++|.+..
T Consensus 155 ~~~~I~y~--~~~l~v~i~~~~---~~~~~~c~~~~~-~~l~~~~y~G~sA~tg~~~d~~dIls~~~~~ 217 (218)
T cd07308 155 TTLRISYL--NNTLKVDITYSE---GNNWKECFTVED-VILPSQGYFGFSAQTGDLSDNHDILSVHTYE 217 (218)
T ss_pred eEEEEEEE--CCEEEEEEeCCC---CCCccEEEEcCC-cccCCCCEEEEEeccCCCcCcEEEEEEEeee
Confidence 99999999 468999997532 233445555542 2578899999999999999999999998753
No 5
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=99.93 E-value=1.2e-23 Score=189.06 Aligned_cols=197 Identities=17% Similarity=0.202 Sum_probs=140.7
Q ss_pred CCcEEecceEEcCCCeEEecCCCCCeEEEEEeCCCeeecCCCCCccceEEEEEEEEeec-CCCCcceEEEEccCCCCCcc
Q 047725 46 SKLHLEGFSNIQPNGLLQMSNSSQLTKGHAFYPYPLNFNTSSPQSLSFSTNFVFAMVPV-NTGGHGMAFLFSPSLDLSQA 124 (299)
Q Consensus 46 ~~l~l~GdA~v~~~g~l~LT~~~~~~~G~v~y~~Pi~l~d~s~~~~sF~t~F~F~I~~~-~~~gDGlAF~l~~~~~~~~~ 124 (299)
.+|.+.|+|.+. ++.||||++.+++.|++|.+.|++. .+|+++|+|+|++. ..+|||||||++.++.
T Consensus 22 ~~W~~~G~t~~~-~~~IrLTp~~~~~~G~iw~~~~~~~-------~~w~ie~~Fri~g~~~~~gdG~a~W~t~~~~---- 89 (225)
T cd06902 22 PFWSHGGDAIAS-LEQVRLTPSLRSKKGSVWTKNPFSF-------ENWEVEVTFRVTGRGRIGADGLAIWYTKERG---- 89 (225)
T ss_pred CceEecccEEec-CCEEEECCCCCCCEEEEeeCCCcCC-------CCEEEEEEEEEecCCCCCCCEEEEEEECCCC----
Confidence 789999999884 8899999999999999999999984 37999999999987 5678999999999753
Q ss_pred CCCccccCCCCCCCCCCCCcEEEEEEecccccccCCCCCCeEEEecCCC-cccCCccCccccC-CCceeeeec-CCCCcE
Q 047725 125 LASAHLGLLNSTNNGQSTNHIIAVELDTVQSVEFKDLNGTHVGIDVNSL-ISNDSAPAAYFSD-EGSYISLDL-QSGNPM 201 (299)
Q Consensus 125 ~~G~~lGl~~~~~~g~~~~~~vAVEFDT~~n~~~~Dp~~~HVgIdvn~~-~s~~t~~~~~~~~-~G~~~~~~l-~~G~~~ 201 (299)
..|+.+|..+ ....+||.|||+.|.+ ....+.|.+..|.- .......-+.... .+.. ... +...+.
T Consensus 90 ~~G~~~G~~~-------~f~Gl~I~~Dt~~n~~--~~~~p~i~~~~NDGt~~yd~~~D~~~~~~~~C~--~~~rn~~~p~ 158 (225)
T cd06902 90 EEGPVFGSSD-------KWNGVGIFFDSFDNDG--KKNNPAILVVGNDGTKSYDHQNDGLTQALGSCL--RDFRNKPYPV 158 (225)
T ss_pred CCCCccCCCC-------cccEEEEEEECCCCCC--CCCCcEEEEEECCCCeeccccCCCcccccceEE--EeccCCCCCe
Confidence 2467777654 3568999999998863 33446787766532 2111110000000 0111 122 234688
Q ss_pred EEEEEeeCCCcEEEEEEeecCCCCCCcceEEEeecCCc-CCCCeeEEEEEeecCCceeceEEEEEEEEe
Q 047725 202 QIWIDYNGEERLLNVTLAPIRVSKPNRPLLSTPLDLSQ-ILLDTMYVGFSASTGILKSNQYILGWSFSR 269 (299)
Q Consensus 202 ~v~I~Y~~~~~~L~V~l~~~~~~~p~~~~ls~~vdL~~-~l~~~vyvGFSAsTG~~~~~h~I~sWsF~s 269 (299)
+++|.|.. +.|+|.++... ++.......++++.. .||+..|+||||+||+..+.|+|++|++.+
T Consensus 159 ~~rI~Y~~--~~l~V~~d~~~--~~~~~~~~~Cf~~~~v~LP~~~yfGiSA~Tg~l~d~hDIls~~~~s 223 (225)
T cd06902 159 RAKITYYQ--NVLTVSINNGF--TPNKDDYELCTRVENMVLPPNGYFGVSAATGGLADDHDVLSFLTFS 223 (225)
T ss_pred EEEEEEEC--CeEEEEEeCCc--CCCCCcccEEEecCCeeCCCCCEEEEEecCCCCCCcEeEEEEEEec
Confidence 99999998 46999887432 222222333344444 378889999999999999999999999864
No 6
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=99.91 E-value=2.3e-22 Score=182.94 Aligned_cols=202 Identities=17% Similarity=0.166 Sum_probs=137.5
Q ss_pred CCCCcEEecceEEcCCCeEEecCCCCCeEEEEEeCCCeeecCCCCCccceEEEEEEEEeec--CCCCcceEEEEccCCCC
Q 047725 44 NESKLHLEGFSNIQPNGLLQMSNSSQLTKGHAFYPYPLNFNTSSPQSLSFSTNFVFAMVPV--NTGGHGMAFLFSPSLDL 121 (299)
Q Consensus 44 ~~~~l~l~GdA~v~~~g~l~LT~~~~~~~G~v~y~~Pi~l~d~s~~~~sF~t~F~F~I~~~--~~~gDGlAF~l~~~~~~ 121 (299)
...+|.+.|+|.+. ++.||||++.+++.|++||+.|+++. +|+++|+|+|.+. ..+|||||||++.++.
T Consensus 18 ~i~~w~~~G~a~v~-~~~IrLTp~~~~~~G~~w~~~p~~~~-------~F~~~f~F~I~~~~~~~~GdGlAfw~t~~~~- 88 (248)
T cd06901 18 SMPLWDFLGSTMVT-SQYIRLTPDHQSKQGSIWNRVPCYLR-------DWEMHVHFKVHGSGKNLFGDGFAIWYTKERM- 88 (248)
T ss_pred CCCCEEEcceEEEc-CCeEEECCCCCCCEEEEeccCCccCC-------CEEEEEEEEEeCCCCCCCCCEEEEEEEcCCC-
Confidence 35789999999985 67999999999999999999999974 7999999999986 5689999999999753
Q ss_pred CccCCCccccCCCCCCCCCCCCcEEEEEEecccccccC-CCCCCeEEEecCCC-cccCCccCccccC-CCceeeeecCCC
Q 047725 122 SQALASAHLGLLNSTNNGQSTNHIIAVELDTVQSVEFK-DLNGTHVGIDVNSL-ISNDSAPAAYFSD-EGSYISLDLQSG 198 (299)
Q Consensus 122 ~~~~~G~~lGl~~~~~~g~~~~~~vAVEFDT~~n~~~~-Dp~~~HVgIdvn~~-~s~~t~~~~~~~~-~G~~~~~~l~~G 198 (299)
..|..+|..+ ....+||.||||.|..-. ....+-|.+.+|.- .......-+.... .+....+ ...+
T Consensus 89 ---~~G~~fG~~~-------~f~Gl~I~~Dt~~n~~~~~~~~~P~i~~~~NDGt~~yd~~~Dg~~~~~~~C~~~~-rn~~ 157 (248)
T cd06901 89 ---QPGPVFGSKD-------NFHGLAIFFDTYSNQNGEHEHVHPYISAMVNNGSLSYDHDRDGTHTELAGCSAPF-RNKD 157 (248)
T ss_pred ---ccCcccccCC-------CCceEEEEEECCCCCCCcccCCCceEEEEEcCCCeeecccCCCchhhcCceeeec-cCCC
Confidence 3456666643 356899999999986410 11233455544432 2111000000000 0111111 2334
Q ss_pred CcEEEEEEeeCCCcEEEEEEeecCCCCCCcceEEEeecCCcCCCCeeEEEEEeecCCceeceEEEEEEEEecc
Q 047725 199 NPMQIWIDYNGEERLLNVTLAPIRVSKPNRPLLSTPLDLSQILLDTMYVGFSASTGILKSNQYILGWSFSRSA 271 (299)
Q Consensus 199 ~~~~v~I~Y~~~~~~L~V~l~~~~~~~p~~~~ls~~vdL~~~l~~~vyvGFSAsTG~~~~~h~I~sWsF~s~~ 271 (299)
.+.+++|.|... .|+|.++..+. ..+..|..++ .-.||...|+||||+||+..+.|+|++..+..-.
T Consensus 158 ~~t~~rI~Y~~~--~l~v~vd~~~~---~~w~~Cf~~~-~v~LP~~~yfGiSA~Tg~~sd~hdIlsv~~~~l~ 224 (248)
T cd06901 158 HDTFVAIRYSKG--RLTVMTDIDGK---NEWKECFDVT-GVRLPTGYYFGASAATGDLSDNHDIISMKLYELD 224 (248)
T ss_pred CCeEEEEEEECC--eEEEEEecCCC---CceeeeEEeC-CeecCCCCEEEEEecCCCCCCcEEEEEEEEecCc
Confidence 567899999974 58888775432 1233333332 1247888999999999999999999998776543
No 7
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=99.88 E-value=1.2e-20 Score=168.23 Aligned_cols=187 Identities=14% Similarity=0.171 Sum_probs=132.3
Q ss_pred CCcEEecceEEcCCCeEEecCCCCCeEEEEEeCCCeeecCCCCCccceEEEEEEEEeec-CCCCcceEEEEccCCCCCcc
Q 047725 46 SKLHLEGFSNIQPNGLLQMSNSSQLTKGHAFYPYPLNFNTSSPQSLSFSTNFVFAMVPV-NTGGHGMAFLFSPSLDLSQA 124 (299)
Q Consensus 46 ~~l~l~GdA~v~~~g~l~LT~~~~~~~G~v~y~~Pi~l~d~s~~~~sF~t~F~F~I~~~-~~~gDGlAF~l~~~~~~~~~ 124 (299)
.+|.+.|+|.+. +++||||++ ++|.|++|.+.|+++.+ +|+++|+|+++++ ..+|||||||++.++....+
T Consensus 21 ~~W~~~G~t~v~-~~~IrLTp~-~s~~G~iWs~~pl~~~~------~w~ie~~Fri~G~~~~~gdGla~W~t~~~~~~~g 92 (215)
T cd06903 21 PNWQTSGNPKLE-SGRIILTPP-GNQRGSLWLKKPLSLKD------EWTIEWTFRSTGPEGRSGGGLNFWLVKDGNADVG 92 (215)
T ss_pred CCeEEcCcEEee-CCeEEECCC-CCceEeEeeCCcCCCCC------CEEEEEEEEecccCCcCCCEEEEEEECCCcccCC
Confidence 689999999985 789999999 99999999999999752 7999999999987 57899999999997542211
Q ss_pred CCCccccCCCCCCCCCCCCcEEEEEEecccccccCCCCCCeEEEecC-CCcccCCccCccccCC--CceeeeecCCCCcE
Q 047725 125 LASAHLGLLNSTNNGQSTNHIIAVELDTVQSVEFKDLNGTHVGIDVN-SLISNDSAPAAYFSDE--GSYISLDLQSGNPM 201 (299)
Q Consensus 125 ~~G~~lGl~~~~~~g~~~~~~vAVEFDT~~n~~~~Dp~~~HVgIdvn-~~~s~~t~~~~~~~~~--G~~~~~~l~~G~~~ 201 (299)
.+.+|-.+ ....+||.|||+.|.. +.|.+..| +........ . .... +.... ..+.+.+.
T Consensus 93 --~~~fG~~~-------~f~Gl~I~~Dt~~n~~------p~i~~~~NDGt~~yd~~~-d-~~~~~g~C~~~-~rn~~~p~ 154 (215)
T cd06903 93 --TSSIYGPS-------KFDGLQLLIDNNGGSG------GSLRGFLNDGSKDYKNED-V-DSLAFGSCLFA-YQDSGVPS 154 (215)
T ss_pred --ccccCCCC-------CCcEEEEEEECCCCCC------ceEEEEECCCCeeccccC-C-cccccceeeEe-ccCCCCCE
Confidence 14455433 3468999999998742 34444444 322211111 0 0000 11111 24456789
Q ss_pred EEEEEeeCCCcEEEEEEeecCCCCCCcceEEEeecCCc-CCC-CeeEEEEEeecCCceeceEEEEEEEEe
Q 047725 202 QIWIDYNGEERLLNVTLAPIRVSKPNRPLLSTPLDLSQ-ILL-DTMYVGFSASTGILKSNQYILGWSFSR 269 (299)
Q Consensus 202 ~v~I~Y~~~~~~L~V~l~~~~~~~p~~~~ls~~vdL~~-~l~-~~vyvGFSAsTG~~~~~h~I~sWsF~s 269 (299)
+++|.|....+.|+|.++. +.|+.. .. .|| ...|+||||+||+..+.|+|++..+..
T Consensus 155 ~iri~Y~~~~~~l~v~vd~-------~~Cf~~----~~v~lP~~~y~fGiSAaTg~~~d~hdIl~~~~~~ 213 (215)
T cd06903 155 TIRLSYDALNSLFKVQVDN-------RLCFQT----DKVQLPQGGYRFGITAANADNPESFEILKLKVWN 213 (215)
T ss_pred EEEEEEECCCCEEEEEECC-------CEEEec----CCeecCCCCCEEEEEEcCCCCCCcEEEEEEEEec
Confidence 9999999876789998853 224432 22 256 567899999999999999999977643
No 8
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=99.86 E-value=5.7e-20 Score=165.73 Aligned_cols=195 Identities=22% Similarity=0.287 Sum_probs=129.8
Q ss_pred CCcEEecceEEcCCCeEEecCCCCCeEEEEEeCCCeeecCCCCCccceEEEEEEEEeec--CCCCcceEEEEccCCCCCc
Q 047725 46 SKLHLEGFSNIQPNGLLQMSNSSQLTKGHAFYPYPLNFNTSSPQSLSFSTNFVFAMVPV--NTGGHGMAFLFSPSLDLSQ 123 (299)
Q Consensus 46 ~~l~l~GdA~v~~~g~l~LT~~~~~~~G~v~y~~Pi~l~d~s~~~~sF~t~F~F~I~~~--~~~gDGlAF~l~~~~~~~~ 123 (299)
.+|.+.|+|.+. ++.||||++.+++.|++|.+.|++.. +|+++|+|+|.+. ...|||||||++.++.
T Consensus 22 ~~W~~~G~t~i~-~~~IrLTp~~~~~~G~iws~~~~~~~-------~w~i~~~Fri~g~~~~~~g~G~a~W~t~~~~--- 90 (229)
T PF03388_consen 22 PNWDIGGSTVIT-DNFIRLTPDRQSQSGSIWSRKPIPFD-------NWEIEFTFRISGQEKGLGGDGMAFWYTKDPG--- 90 (229)
T ss_dssp TTEEEEET-EEE-SSEEEEE-SSTTEEEEEEESS-BEES-------EEEEEEEEEEESS-SSS-S-EEEEEEESSSS---
T ss_pred CCEEECCeEEec-CCEEEECCCcccCEEEEEEcCCCCcc-------CEEEEEEEEEeccccCcCCCeEEEEEEcCcc---
Confidence 589999999886 89999999999999999999999974 7999999999987 4589999999998754
Q ss_pred cCCCccccCCCCCCCCCCCCcEEEEEEecccccccC-CCCCCeEEEecCCCcccCCccCccccCCCc---ee--eeecC-
Q 047725 124 ALASAHLGLLNSTNNGQSTNHIIAVELDTVQSVEFK-DLNGTHVGIDVNSLISNDSAPAAYFSDEGS---YI--SLDLQ- 196 (299)
Q Consensus 124 ~~~G~~lGl~~~~~~g~~~~~~vAVEFDT~~n~~~~-Dp~~~HVgIdvn~~~s~~t~~~~~~~~~G~---~~--~~~l~- 196 (299)
..|..+|..+ ....+||-||||.|.+.. ....+.|.+.+|.-.. ......+ |. +- ....+
T Consensus 91 -~~G~~fG~~~-------~f~Gl~i~idt~~N~~~~~~~~~p~i~~~~NDGt~----~~~~~~d-g~~~~~~~C~~~~rn 157 (229)
T PF03388_consen 91 -SDGPVFGGPD-------KFDGLGIFIDTYDNDEGGHKRGFPYISAMLNDGTK----SYDHDND-GKDQSLGSCSADYRN 157 (229)
T ss_dssp -SSCSBTTB-S-------S-EEEEEEEEES-TTCTTCTSTSSEEEEEEEESSS-------GGGT-TTTT-SEEEE---BT
T ss_pred -ccccccCCCc-------ccceEEEEEEcccCCCcccccccceEEEEecCCCc----ccccccc-CcccccccceeccCc
Confidence 2567777643 357899999999996421 1235677777763221 1111111 10 00 11222
Q ss_pred CCCcEEEEEEeeCCCcEEEEEEeecCCCCCCcceEEEeecCCcCCCCeeEEEEEeecCCceeceEEEEEEE
Q 047725 197 SGNPMQIWIDYNGEERLLNVTLAPIRVSKPNRPLLSTPLDLSQILLDTMYVGFSASTGILKSNQYILGWSF 267 (299)
Q Consensus 197 ~G~~~~v~I~Y~~~~~~L~V~l~~~~~~~p~~~~ls~~vdL~~~l~~~vyvGFSAsTG~~~~~h~I~sWsF 267 (299)
...+.+++|.|... .|+|.++..-.........|..++ .-.||+..|+||||+||+..++|+|++...
T Consensus 158 ~~~p~~~ri~Y~~~--~l~v~id~~~~~~~~~~~~Cf~~~-~v~LP~~~yfGvSA~Tg~~~d~hdi~s~~~ 225 (229)
T PF03388_consen 158 SDVPTRIRISYSKN--TLTVSIDSNYLKNQDDWELCFTTD-GVDLPEGYYFGVSAATGELSDNHDILSVKT 225 (229)
T ss_dssp ESSEEEEEEEEETT--EEEEEEETSCCSECCTTEEEEEES-TEEGGSSBEEEEEEEESSSGGEEEEEEEEE
T ss_pred CCCCEEEEEEEECC--eEEEEEecccccCCcCCcEEEEcC-CeecCCCCEEEEEecCCCCCCcEEEEEEEE
Confidence 34677999999975 678887732011112233444332 123688899999999999999999999654
No 9
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.5e-17 Score=155.57 Aligned_cols=193 Identities=18% Similarity=0.250 Sum_probs=141.6
Q ss_pred CcEEecceEEcCCCeEEecCCCCCeEEEEEeCCCeeecCCCCCccceEEEEEEEEeec-CCCCcceEEEEccCCCCCccC
Q 047725 47 KLHLEGFSNIQPNGLLQMSNSSQLTKGHAFYPYPLNFNTSSPQSLSFSTNFVFAMVPV-NTGGHGMAFLFSPSLDLSQAL 125 (299)
Q Consensus 47 ~l~l~GdA~v~~~g~l~LT~~~~~~~G~v~y~~Pi~l~d~s~~~~sF~t~F~F~I~~~-~~~gDGlAF~l~~~~~~~~~~ 125 (299)
-|...|||.. +...|||+|+..++.|.||.+..+++. .|+++.+|++++. ..+|||||+|.+.... -
T Consensus 55 FW~~~GdAIa-s~eqvRlaPSmrsrkGavWtka~~~fe-------~weVev~~rVtGrGRiGAdGlaiWYt~~~G----~ 122 (497)
T KOG3838|consen 55 FWSHHGDAIA-SSEQVRLAPSMRSRKGAVWTKASVPFE-------NWEVEVQFRVTGRGRIGADGLAIWYTRGRG----H 122 (497)
T ss_pred eeeecCcccc-cccceeeccccccccCceeecccCCcc-------cceEEEEEEecccccccCCceEEEEecCCC----c
Confidence 3899999965 578999999999999999999999875 5999999999998 8899999999998643 3
Q ss_pred CCccccCCCCCCCCCCCCcEEEEEEecccccccCCCCCCeEEEecCCCcccCCccCccccCCCceee-----eecCCC-C
Q 047725 126 ASAHLGLLNSTNNGQSTNHIIAVELDTVQSVEFKDLNGTHVGIDVNSLISNDSAPAAYFSDEGSYIS-----LDLQSG-N 199 (299)
Q Consensus 126 ~G~~lGl~~~~~~g~~~~~~vAVEFDT~~n~~~~Dp~~~HVgIdvn~~~s~~t~~~~~~~~~G~~~~-----~~l~~G-~ 199 (299)
-|+.+|-.+. ...++|-||.+.|.. .-+++.|.+-.|.-.- +...-.| |..+. -+.+|. -
T Consensus 123 ~GpVfGg~d~-------WnGigiffDSfdnD~--qknnP~Is~~lndGt~----~ydh~~D-GasQ~LssCqrDFRNkPy 188 (497)
T KOG3838|consen 123 VGPVFGGLDS-------WNGIGIFFDSFDNDG--QKNNPAISVLLNDGTI----PYDHPGD-GASQGLSSCQRDFRNKPY 188 (497)
T ss_pred cccccccccc-------ccceEEEeecccccC--CcCCccEEEEecCCcc----cccCCCc-cHHHHHHHhhHHhccCCC
Confidence 4666775433 457999999999974 4567788887774321 1111111 22111 133332 4
Q ss_pred cEEEEEEeeCCCcEEEEEEeecCCCCCCcceEEEeecCCcCCCCeeEEEEEeecCCceeceEEEEEEEEe
Q 047725 200 PMQIWIDYNGEERLLNVTLAPIRVSKPNRPLLSTPLDLSQILLDTMYVGFSASTGILKSNQYILGWSFSR 269 (299)
Q Consensus 200 ~~~v~I~Y~~~~~~L~V~l~~~~~~~p~~~~ls~~vdL~~~l~~~vyvGFSAsTG~~~~~h~I~sWsF~s 269 (299)
+.+++|+|.+ ++|+|.+...=.+. ..+-+|.+++ +-.||...|+|.||+||++.+.|+|+++...+
T Consensus 189 PvRarItY~~--nvLtv~innGmtp~-d~yE~C~rve-~~~lp~nGyFGvSAATGgLADDHDVl~Fltfs 254 (497)
T KOG3838|consen 189 PVRARITYYG--NVLTVMINNGMTPS-DDYEFCVRVE-NLLLPPNGYFGVSAATGGLADDHDVLSFLTFS 254 (497)
T ss_pred CceEEEEEec--cEEEEEEcCCCCCC-CCcceeEecc-ceeccCCCeeeeeecccccccccceeeeEEee
Confidence 6799999997 58999887532222 3345565554 23579999999999999999999999986444
No 10
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=7.1e-16 Score=142.20 Aligned_cols=190 Identities=18% Similarity=0.238 Sum_probs=137.2
Q ss_pred CCcEEecceEEcCCCeEEecCCCCCeEEEEEeCCCeeecCCCCCccceEEEEEEEEeec--CCCCcceEEEEccCCCCCc
Q 047725 46 SKLHLEGFSNIQPNGLLQMSNSSQLTKGHAFYPYPLNFNTSSPQSLSFSTNFVFAMVPV--NTGGHGMAFLFSPSLDLSQ 123 (299)
Q Consensus 46 ~~l~l~GdA~v~~~g~l~LT~~~~~~~G~v~y~~Pi~l~d~s~~~~sF~t~F~F~I~~~--~~~gDGlAF~l~~~~~~~~ 123 (299)
-+|.+.|.+.+. .+.||||++.+++.|++|-+.|+..+ +|+..+.|+++++ ...|||||+|++.++..
T Consensus 72 ~~W~~~Gstvv~-~~~irLT~d~qsk~GAv~n~~Pv~s~-------~wev~v~fkv~~~s~~lfgdG~Aiw~t~Er~q-- 141 (351)
T KOG3839|consen 72 PNWNLSGSTVVT-SNYIRLTPDEQSKSGAVWNRQPVFSR-------DWEVLVHFKVHGQSKNLFGDGMAIWYTKERAQ-- 141 (351)
T ss_pred cCccccccEEEE-eeeeeccccccccccccccCCCcccc-------ceeEEEEEEEecCCCcccccceEEEeeccccc--
Confidence 579999999986 78999999999999999999999854 6999999999987 67899999999998754
Q ss_pred cCCCccccCCCCCCCCCCCCcEEEEEEecccccccCCCC--CCeEEEecCCCcccCCccCccccCC-Ccee-----eeec
Q 047725 124 ALASAHLGLLNSTNNGQSTNHIIAVELDTVQSVEFKDLN--GTHVGIDVNSLISNDSAPAAYFSDE-GSYI-----SLDL 195 (299)
Q Consensus 124 ~~~G~~lGl~~~~~~g~~~~~~vAVEFDT~~n~~~~Dp~--~~HVgIdvn~~~s~~t~~~~~~~~~-G~~~-----~~~l 195 (299)
.|+.+|-.. ..+.+||-.|||.|.. +-+. .+.+.+.+|. .+.+|..++ |... ...+
T Consensus 142 --~GPvFG~~d-------kF~GL~vfidtY~n~~-g~~~~v~P~isvmv~~------gs~sYD~~~Dg~~tel~gc~a~~ 205 (351)
T KOG3839|consen 142 --PGPVFGSKD-------KFTGLAVFIDTYGNHN-GPHEHVFPYISVMVNI------GSLSYDHSKDGTHTELAGCTANF 205 (351)
T ss_pred --CCCCCCCcc-------cceeEEEEEeccCCcC-CCcccceeeEEEEecc------CCcccccCCCCCccccccceeee
Confidence 577888654 2568999999999864 1111 2344444432 122333332 2111 1122
Q ss_pred CCCC-cEEEEEEeeCCCcEEEEEEeecCCCCCCcceEEEeecCCcC-CCCeeEEEEEeecCCceeceEEEEEEEE
Q 047725 196 QSGN-PMQIWIDYNGEERLLNVTLAPIRVSKPNRPLLSTPLDLSQI-LLDTMYVGFSASTGILKSNQYILGWSFS 268 (299)
Q Consensus 196 ~~G~-~~~v~I~Y~~~~~~L~V~l~~~~~~~p~~~~ls~~vdL~~~-l~~~vyvGFSAsTG~~~~~h~I~sWsF~ 268 (299)
++.. ...+.|+|+. ++|++..+..+ |.+. .-+.+++++ +|..-|+|+||+||++.+.|+|.+-.+.
T Consensus 206 rn~~~dt~~~iry~~--~~l~~~~dl~~---~~~~--~~c~~~n~v~lp~g~~fg~SasTGdlSd~HdivS~kl~ 273 (351)
T KOG3839|consen 206 RNLPHDTLVVIRYEK--KTLSISIDLEG---PNEW--IDCFSLNNVELPLGYFFGVSASTGDLSDSHDIVSLKLF 273 (351)
T ss_pred ccCCCcceeEEEecC--CceEEEEecCC---Ccee--eeeeeecceecccceEEeeeeccCccchhhHHHHhhhh
Confidence 3322 2468899998 56777776543 3333 334556665 8899999999999999999999987653
No 11
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=99.44 E-value=1.5e-11 Score=109.86 Aligned_cols=200 Identities=14% Similarity=0.129 Sum_probs=121.1
Q ss_pred CCCeEEecCCCCCeEEEEEeCCCeeecCCCCCccceEEEEEEEEeec-CCCCcceEEEEccCCCCC-ccCCCccccCCCC
Q 047725 58 PNGLLQMSNSSQLTKGHAFYPYPLNFNTSSPQSLSFSTNFVFAMVPV-NTGGHGMAFLFSPSLDLS-QALASAHLGLLNS 135 (299)
Q Consensus 58 ~~g~l~LT~~~~~~~G~v~y~~Pi~l~d~s~~~~sF~t~F~F~I~~~-~~~gDGlAF~l~~~~~~~-~~~~G~~lGl~~~ 135 (299)
.+|.||||++..+|+|.+.|.++++-.+ ...+++|.+...+. ..+||||||||....-.| .|..|+.|||..+
T Consensus 30 ~~g~LRLT~~~~nqata~~~~~~FPs~~-----n~v~veFd~yayg~~g~GADGia~vLsDasv~p~~G~fGGsLGYa~~ 104 (255)
T cd06900 30 VNNRLRLTDASGNQATAVTLQRLFPSAG-----NYVEVEFDYYAYGSGGNGADGVALVLSDASVTPQAGAFGGSLGYAQR 104 (255)
T ss_pred ccCeEEeccCccCcceeEEEeeeeccCC-----CeEEEEEEEEEecCCCCCCceEEEEEeCCCcCCcCCCcCcccccccc
Confidence 3799999999999999999999998532 25899999988775 678999999998653223 4678999999877
Q ss_pred CC-CCCCCCcEEEEEEeccccccc-CCC-----C--CCeEEEecCCCcccCCccCccccCCCcee-eeecCC----CCcE
Q 047725 136 TN-NGQSTNHIIAVELDTVQSVEF-KDL-----N--GTHVGIDVNSLISNDSAPAAYFSDEGSYI-SLDLQS----GNPM 201 (299)
Q Consensus 136 ~~-~g~~~~~~vAVEFDT~~n~~~-~Dp-----~--~~HVgIdvn~~~s~~t~~~~~~~~~G~~~-~~~l~~----G~~~ 201 (299)
+. ........++|-||.|-|..- .+. . .+.|+| .+..+. .....|....+... .++.++ ...|
T Consensus 105 ~~~~~GfaGGwLGiGlDEyGNFsn~~eg~~~~~g~r~~sV~v--RGsg~g-~~gY~yl~gt~~~~~~id~~~~~~~~~~h 181 (255)
T cd06900 105 NDGVPGFAGGWLGIGLDEYGNFSNPNEGRNGFSGRRPQSVTV--RGSGSG-YTGYKYITGTGVLPPGIDNNSTSTPAPGH 181 (255)
T ss_pred cCCCCccccceEEEEEeccccccCCCCCccCCcccccceEEE--ECCCCC-CcCceEecccCCCCcccccCCCCCCCCce
Confidence 42 223445689999999888531 111 1 123333 232221 11112221111100 111111 1335
Q ss_pred EEEEEeeCC---CcEEEEEEeecCCCCCCcceEEEeec---CC--cCCCCeeEEEEEeecCCceeceEEEEEEE
Q 047725 202 QIWIDYNGE---ERLLNVTLAPIRVSKPNRPLLSTPLD---LS--QILLDTMYVGFSASTGILKSNQYILGWSF 267 (299)
Q Consensus 202 ~v~I~Y~~~---~~~L~V~l~~~~~~~p~~~~ls~~vd---L~--~~l~~~vyvGFSAsTG~~~~~h~I~sWsF 267 (299)
+-+|.-|+. ...|+|.-+...... .. .+-..+| .. ..+|+..+++|++|||+....|+|-..++
T Consensus 182 rY~i~Ids~~~~~~~vsV~R~~~~gg~-~~-~~I~~~d~~~~~~q~avP~~f~lS~TgSTGgstN~HEIdnf~V 253 (255)
T cd06900 182 RYRITIDSTNGDNAWLSVERDIGNGGA-YF-VVILTFDALAEQNQDAIPENFYLSFTGSTGGSTNTHEIDNFQV 253 (255)
T ss_pred EEEEEEecCCCCceEEEEEEEccCCce-eE-EeecceeeccccCCCCCCccEEEEEEecCCCcccceeecceEe
Confidence 555555543 123555554321111 01 1111222 22 45899999999999999999999988764
No 12
>smart00282 LamG Laminin G domain.
Probab=77.31 E-value=34 Score=27.12 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=20.8
Q ss_pred eecCCCCcEEEEEEeeCCCcEEEEEEee
Q 047725 193 LDLQSGNPMQIWIDYNGEERLLNVTLAP 220 (299)
Q Consensus 193 ~~l~~G~~~~v~I~Y~~~~~~L~V~l~~ 220 (299)
..+++|++|++.|.++. +.+.++++.
T Consensus 57 ~~~~dg~WH~v~i~~~~--~~~~l~VD~ 82 (135)
T smart00282 57 TPLNDGQWHRVAVERNG--RRVTLSVDG 82 (135)
T ss_pred eEeCCCCEEEEEEEEeC--CEEEEEECC
Confidence 46889999999999986 467777764
No 13
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=70.61 E-value=34 Score=37.68 Aligned_cols=151 Identities=23% Similarity=0.267 Sum_probs=88.7
Q ss_pred CCcEEecceEEc--CCCeEEecCCCCCeEEEEEeCCCeeecC-CC-----CCccceEEEEEEEEeecCCCCcceEEEEcc
Q 047725 46 SKLHLEGFSNIQ--PNGLLQMSNSSQLTKGHAFYPYPLNFNT-SS-----PQSLSFSTNFVFAMVPVNTGGHGMAFLFSP 117 (299)
Q Consensus 46 ~~l~l~GdA~v~--~~g~l~LT~~~~~~~G~v~y~~Pi~l~d-~s-----~~~~sF~t~F~F~I~~~~~~gDGlAF~l~~ 117 (299)
..|.|+|...++ .++-++|..-.....++++-..|+.++. .+ .--+.|+.+|-|+... ...||| ++.+
T Consensus 804 ~~LvFNG~~Yld~~K~~~~~ls~l~a~fkl~~iv~~paTf~sk~Sy~~la~L~ay~s~~l~Fqfkt--~sp~gl--l~fn 879 (1591)
T KOG3514|consen 804 SGLVFNGQDYLDKCKMGDIQLSELSARFKLRAIVADPATFKSKSSYVKLATLQAYFSMHLFFQFKT--TSPDGL--LLFN 879 (1591)
T ss_pred hheEECcHHHHHHHhcCCcchhhcchhhCceEEeeccceeeechhhhhhhhhheeeEEEEEEEEee--cCCCeE--EEec
Confidence 679999988764 3577888776666778888888998876 21 1237788887777663 355664 2222
Q ss_pred CCCCCccCCCccccCCCCCCCCCCCCcEEEEEEecccccccCCCCCCeEEEecCCC-cccCCccCccccCCCceeeeecC
Q 047725 118 SLDLSQALASAHLGLLNSTNNGQSTNHIIAVELDTVQSVEFKDLNGTHVGIDVNSL-ISNDSAPAAYFSDEGSYISLDLQ 196 (299)
Q Consensus 118 ~~~~~~~~~G~~lGl~~~~~~g~~~~~~vAVEFDT~~n~~~~Dp~~~HVgIdvn~~-~s~~t~~~~~~~~~G~~~~~~l~ 196 (299)
.. .-+.++|||.=.-+ =|--.|..+. .+.+-. ....|+
T Consensus 880 ~g---------------------d~ndfi~velvnG~---------ihYtfdlg~gp~~~k~~-----------sr~hln 918 (1591)
T KOG3514|consen 880 SG---------------------DGNDFIAVELVNGY---------IHYTFDLGNGPTSMKGP-----------SRQHLN 918 (1591)
T ss_pred CC---------------------CCCceEEEEEeCcE---------EEEEEEcCCCcccccCc-----------ccCcCc
Confidence 11 12568999975321 1444454332 122111 135678
Q ss_pred CCCcEEEEEEeeCCCcEEEEEEeecCCCCCCcceEEEeecCCcCCCCeeEEE
Q 047725 197 SGNPMQIWIDYNGEERLLNVTLAPIRVSKPNRPLLSTPLDLSQILLDTMYVG 248 (299)
Q Consensus 197 ~G~~~~v~I~Y~~~~~~L~V~l~~~~~~~p~~~~ls~~vdL~~~l~~~vyvG 248 (299)
|-++|+|-|.=+.. +.=++.++. +-+.+++...++| -|....|+|
T Consensus 919 DnrWHnV~I~rd~~-~~HtL~vD~----s~~t~~~~g~~~l--~l~g~LyiG 963 (1591)
T KOG3514|consen 919 DNRWHNVLIYRDKT-NTHTLKVDN----SSTTQIIDGAVNL--DLKGKLYIG 963 (1591)
T ss_pred cccceeEEEEcCCC-CceEEEecC----ceEEEEecCcccc--ccccceecc
Confidence 88999999987743 333333332 1223344443333 356778887
No 14
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=69.46 E-value=56 Score=26.05 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=21.3
Q ss_pred ecCCCCcEEEEEEeeCCCcEEEEEEeec
Q 047725 194 DLQSGNPMQIWIDYNGEERLLNVTLAPI 221 (299)
Q Consensus 194 ~l~~G~~~~v~I~Y~~~~~~L~V~l~~~ 221 (299)
.+.+|++|++.|.++. +.+.++++..
T Consensus 76 ~v~dg~Wh~v~i~~~~--~~~~l~VD~~ 101 (151)
T cd00110 76 PLNDGQWHSVSVERNG--RSVTLSVDGE 101 (151)
T ss_pred ccCCCCEEEEEEEECC--CEEEEEECCc
Confidence 4789999999999997 5777777753
No 15
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=31.77 E-value=2.1e+02 Score=22.08 Aligned_cols=46 Identities=24% Similarity=0.464 Sum_probs=30.6
Q ss_pred cCCCCcEEEEEEeeCCCcEEEEEEeecCCCCCCcceEEEeecCCcCCCCeeEEEEE
Q 047725 195 LQSGNPMQIWIDYNGEERLLNVTLAPIRVSKPNRPLLSTPLDLSQILLDTMYVGFS 250 (299)
Q Consensus 195 l~~G~~~~v~I~Y~~~~~~L~V~l~~~~~~~p~~~~ls~~vdL~~~l~~~vyvGFS 250 (299)
|+..+....||.++. ..++|..+. ...|++++. |- + -..--|||||
T Consensus 49 ls~~e~~~fwI~~~~--G~I~vg~~g-----~~~pfl~~~-Dp-~-~~~v~yvGft 94 (102)
T PF12248_consen 49 LSPSEFRMFWISWRD--GTIRVGRGG-----EDEPFLEWT-DP-E-PIPVNYVGFT 94 (102)
T ss_pred CCCCccEEEEEEECC--CEEEEEECC-----CccEEEEEE-CC-C-CCcccEEEEe
Confidence 455688999999775 467777653 235788775 32 1 3456799994
No 16
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=27.86 E-value=1.4e+02 Score=26.86 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=40.7
Q ss_pred CCcEEecceEEc-CCCeEEecCCC----CCeEEEEEeCCCeeecCCCCCccceEEEEEEEEeecCCCCcceEEEEcc
Q 047725 46 SKLHLEGFSNIQ-PNGLLQMSNSS----QLTKGHAFYPYPLNFNTSSPQSLSFSTNFVFAMVPVNTGGHGMAFLFSP 117 (299)
Q Consensus 46 ~~l~l~GdA~v~-~~g~l~LT~~~----~~~~G~v~y~~Pi~l~d~s~~~~sF~t~F~F~I~~~~~~gDGlAF~l~~ 117 (299)
.+|.++|.+.++ ++|.++|.... ..+.-+..+-.|..+-+ ...++..|+...+ -|||.++..
T Consensus 18 ~~w~~eG~~~~t~~~~~m~l~~~~~~e~~~~~~hfVlW~p~~Fp~------~i~IsweF~p~~e----pGLamlfF~ 84 (218)
T PF09224_consen 18 ADWVAEGPAKVTFQNGRMELSGELDPEQFGDAAHFVLWCPEVFPD------DIRISWEFTPLAE----PGLAMLFFA 84 (218)
T ss_dssp TT-EEEESEEEE-GGGSEEEE------ESSTT--EEEE-SS-B-S------SEEEEEEEEEEE-----SEEEEEEEE
T ss_pred hhhhccCCeEEeecCCcEEEeeeeccccccccccEEEECcccCCC------CeEEEEEEEEcCC----CCEEEEEee
Confidence 789999999885 57899997432 35667777778877765 7889999988753 577776654
No 17
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=27.56 E-value=52 Score=25.58 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=8.5
Q ss_pred chhhHHHHHHHHHHHHHHh
Q 047725 11 SVTFYVILILMSWLHLTIL 29 (299)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~ 29 (299)
|-++.|+.++|+++.|+++
T Consensus 3 SK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISS 21 (95)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 3344444444444444443
No 18
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=24.24 E-value=95 Score=27.17 Aligned_cols=28 Identities=7% Similarity=0.065 Sum_probs=24.8
Q ss_pred ecCCCCcEEEEEEeeCCCcEEEEEEeec
Q 047725 194 DLQSGNPMQIWIDYNGEERLLNVTLAPI 221 (299)
Q Consensus 194 ~l~~G~~~~v~I~Y~~~~~~L~V~l~~~ 221 (299)
.+.+|+.|++.++|++.+++++++++..
T Consensus 86 ~~~~g~W~hvc~tw~~~~g~~~lyvnG~ 113 (206)
T smart00159 86 PESDGKWHHICTTWESSSGIAELWVDGK 113 (206)
T ss_pred cccCCceEEEEEEEECCCCcEEEEECCE
Confidence 4678899999999999999999999864
No 19
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=21.35 E-value=1.3e+02 Score=24.17 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.5
Q ss_pred CCcEEEEEEeeCCCcEEEEEEeec
Q 047725 198 GNPMQIWIDYNGEERLLNVTLAPI 221 (299)
Q Consensus 198 G~~~~v~I~Y~~~~~~L~V~l~~~ 221 (299)
++.+++.+.||+..+++++|++..
T Consensus 61 ~~W~hva~v~d~~~g~~~lYvnG~ 84 (133)
T smart00560 61 GVWVHLAGVYDGGAGKLSLYVNGV 84 (133)
T ss_pred CCEEEEEEEEECCCCeEEEEECCE
Confidence 689999999999888999999854
No 20
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=20.51 E-value=1.2e+02 Score=26.27 Aligned_cols=27 Identities=7% Similarity=0.105 Sum_probs=24.0
Q ss_pred cCCCCcEEEEEEeeCCCcEEEEEEeec
Q 047725 195 LQSGNPMQIWIDYNGEERLLNVTLAPI 221 (299)
Q Consensus 195 l~~G~~~~v~I~Y~~~~~~L~V~l~~~ 221 (299)
..+|+.|++.++|++.+++++++++..
T Consensus 87 ~~~g~W~hv~~t~d~~~g~~~lyvnG~ 113 (201)
T cd00152 87 ESDGAWHHICVTWESTSGIAELWVNGK 113 (201)
T ss_pred CCCCCEEEEEEEEECCCCcEEEEECCE
Confidence 367899999999999999999999864
Done!