Query 047726
Match_columns 1297
No_of_seqs 385 out of 1376
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 02:31:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 99.6 1.1E-15 2.3E-20 185.1 7.9 107 1072-1187 221-327 (640)
2 PF05964 FYRN: F/Y-rich N-term 99.5 2.9E-14 6.2E-19 123.2 4.5 48 370-417 1-54 (54)
3 cd05506 Bromo_plant1 Bromodoma 99.4 1.3E-13 2.8E-18 130.4 7.4 99 1074-1181 1-99 (99)
4 cd05496 Bromo_WDR9_II Bromodom 99.4 4.8E-13 1E-17 132.1 8.6 106 1072-1188 4-110 (119)
5 cd05495 Bromo_cbp_like Bromodo 99.4 5.8E-13 1.2E-17 129.1 8.5 103 1072-1183 2-105 (108)
6 cd05503 Bromo_BAZ2A_B_like Bro 99.4 6.5E-13 1.4E-17 126.1 7.8 96 1075-1181 2-97 (97)
7 cd05505 Bromo_WSTF_like Bromod 99.4 1.3E-12 2.8E-17 124.7 7.5 95 1075-1180 2-96 (97)
8 cd05498 Bromo_Brdt_II_like Bro 99.4 1.5E-12 3.3E-17 124.0 7.8 98 1075-1181 2-102 (102)
9 cd05501 Bromo_SP100C_like Brom 99.3 2E-12 4.4E-17 124.9 8.1 95 1075-1183 4-98 (102)
10 cd05500 Bromo_BDF1_2_I Bromodo 99.3 3.8E-12 8.1E-17 122.0 8.7 100 1072-1180 3-102 (103)
11 cd05499 Bromo_BDF1_2_II Bromod 99.3 3.6E-12 7.9E-17 121.7 8.2 101 1075-1181 2-102 (102)
12 cd05497 Bromo_Brdt_I_like Brom 99.3 2.5E-12 5.4E-17 124.7 7.1 95 1079-1182 11-105 (107)
13 cd05504 Bromo_Acf1_like Bromod 99.3 3.5E-12 7.6E-17 125.1 7.6 101 1072-1183 11-111 (115)
14 cd05509 Bromo_gcn5_like Bromod 99.3 6.1E-12 1.3E-16 119.7 8.0 99 1074-1183 2-100 (101)
15 PF05965 FYRC: F/Y rich C-term 99.3 2.2E-12 4.8E-17 119.9 4.4 73 508-639 14-86 (86)
16 cd05502 Bromo_tif1_like Bromod 99.3 1.1E-11 2.3E-16 120.0 9.0 101 1072-1184 3-106 (109)
17 cd05507 Bromo_brd8_like Bromod 99.3 1E-11 2.2E-16 119.6 8.3 100 1072-1182 2-101 (104)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.2 1.6E-11 3.5E-16 118.9 8.4 99 1074-1183 2-106 (107)
19 smart00542 FYRC "FY-rich" doma 99.2 1.5E-11 3.3E-16 115.2 5.5 75 509-642 11-85 (86)
20 cd05510 Bromo_SPT7_like Bromod 99.2 5.1E-11 1.1E-15 116.7 8.0 100 1072-1182 6-107 (112)
21 cd05508 Bromo_RACK7 Bromodomai 99.1 1.2E-10 2.5E-15 112.0 7.9 94 1074-1179 4-97 (99)
22 cd05513 Bromo_brd7_like Bromod 99.1 9.4E-11 2E-15 112.4 7.1 91 1074-1175 2-92 (98)
23 cd05519 Bromo_SNF2 Bromodomain 99.1 1.7E-10 3.8E-15 110.7 7.9 102 1075-1181 2-103 (103)
24 cd05528 Bromo_AAA Bromodomain; 99.1 1.7E-10 3.6E-15 113.0 7.2 98 1076-1184 6-107 (112)
25 cd05515 Bromo_polybromo_V Brom 99.1 2.2E-10 4.8E-15 110.6 7.3 103 1075-1182 2-104 (105)
26 cd05524 Bromo_polybromo_I Brom 99.1 3.7E-10 7.9E-15 110.7 8.3 101 1074-1185 3-109 (113)
27 cd05512 Bromo_brd1_like Bromod 99.0 3E-10 6.4E-15 108.8 6.7 90 1076-1176 4-93 (98)
28 cd05525 Bromo_ASH1 Bromodomain 99.0 7E-10 1.5E-14 107.8 8.4 103 1073-1180 2-104 (106)
29 smart00297 BROMO bromo domain. 99.0 8.6E-10 1.9E-14 104.3 8.0 100 1073-1183 7-106 (107)
30 cd05511 Bromo_TFIID Bromodomai 99.0 7.7E-10 1.7E-14 108.2 7.0 94 1079-1183 6-99 (112)
31 cd04369 Bromodomain Bromodomai 99.0 1.3E-09 2.9E-14 99.2 7.3 95 1075-1180 2-98 (99)
32 cd05529 Bromo_WDR9_I_like Brom 99.0 2E-09 4.3E-14 107.6 9.1 103 1069-1181 20-125 (128)
33 KOG1244 Predicted transcriptio 98.9 2E-10 4.4E-15 125.5 1.6 58 1219-1276 271-331 (336)
34 PF00439 Bromodomain: Bromodom 98.9 1.3E-09 2.8E-14 99.0 6.2 84 1078-1172 1-84 (84)
35 cd05518 Bromo_polybromo_IV Bro 98.9 2.4E-09 5.1E-14 103.6 7.5 100 1076-1180 3-102 (103)
36 cd05517 Bromo_polybromo_II Bro 98.9 3.5E-09 7.5E-14 102.4 8.0 99 1076-1179 3-101 (103)
37 cd05520 Bromo_polybromo_III Br 98.9 4.1E-09 8.8E-14 101.9 6.7 82 1096-1180 21-102 (103)
38 smart00541 FYRN "FY-rich" doma 98.8 6.2E-09 1.3E-13 87.3 4.1 35 383-417 5-44 (44)
39 cd05521 Bromo_Rsc1_2_I Bromodo 98.7 1.6E-08 3.4E-13 98.5 6.9 100 1074-1180 2-101 (106)
40 cd05522 Bromo_Rsc1_2_II Bromod 98.7 2.3E-08 5E-13 96.7 7.1 81 1097-1180 23-103 (104)
41 KOG0825 PHD Zn-finger protein 98.7 5.1E-09 1.1E-13 125.8 2.6 50 1227-1276 216-266 (1134)
42 cd05492 Bromo_ZMYND11 Bromodom 98.7 2.5E-08 5.4E-13 97.9 6.4 82 1089-1176 17-98 (109)
43 PF01429 MBD: Methyl-CpG bindi 98.6 1.2E-08 2.7E-13 93.9 2.6 54 223-276 2-58 (77)
44 KOG4299 PHD Zn-finger protein 98.6 1.1E-08 2.4E-13 122.0 1.7 52 29-89 253-304 (613)
45 KOG1244 Predicted transcriptio 98.5 4.5E-08 9.7E-13 107.6 2.5 50 29-89 281-330 (336)
46 PF00628 PHD: PHD-finger; Int 98.4 4.3E-08 9.3E-13 82.5 0.6 48 1228-1275 1-50 (51)
47 PF00628 PHD: PHD-finger; Int 98.4 1.1E-07 2.4E-12 80.0 1.8 50 31-89 1-50 (51)
48 KOG4299 PHD Zn-finger protein 98.3 1.5E-07 3.3E-12 112.6 1.8 55 1226-1280 253-309 (613)
49 KOG1245 Chromatin remodeling c 98.3 3.8E-07 8.2E-12 119.0 5.0 94 1078-1183 1306-1399(1404)
50 smart00249 PHD PHD zinc finger 98.2 8.5E-07 1.9E-11 71.3 3.4 47 31-87 1-47 (47)
51 smart00249 PHD PHD zinc finger 98.1 2.4E-06 5.1E-11 68.7 3.6 46 1228-1273 1-47 (47)
52 cd00122 MBD MeCP2, MBD1, MBD2, 98.1 3.3E-06 7.2E-11 75.1 4.7 45 231-275 5-51 (62)
53 cd01396 MeCP2_MBD MeCP2, MBD1, 98.1 3.6E-06 7.7E-11 78.4 4.6 45 231-275 6-52 (77)
54 KOG1512 PHD Zn-finger protein 98.0 1.7E-06 3.7E-11 95.9 1.8 44 29-85 314-357 (381)
55 KOG1512 PHD Zn-finger protein 98.0 1.6E-06 3.6E-11 96.0 1.4 55 1220-1276 305-363 (381)
56 KOG1973 Chromatin remodeling p 98.0 4.1E-06 8.9E-11 93.6 3.2 54 22-90 212-268 (274)
57 COG5076 Transcription factor i 97.9 1.3E-05 2.7E-10 92.6 6.4 113 1073-1190 142-254 (371)
58 KOG0383 Predicted helicase [Ge 97.9 7.4E-06 1.6E-10 100.9 4.0 66 29-116 47-114 (696)
59 KOG0825 PHD Zn-finger protein 97.9 5E-06 1.1E-10 101.0 1.7 51 28-89 214-265 (1134)
60 KOG1245 Chromatin remodeling c 97.9 2.6E-06 5.7E-11 111.3 -0.8 53 1226-1278 1108-1160(1404)
61 smart00391 MBD Methyl-CpG bind 97.8 1.9E-05 4.1E-10 73.6 4.3 48 229-276 5-55 (77)
62 KOG4443 Putative transcription 97.8 1.1E-05 2.3E-10 97.5 2.4 50 1226-1275 68-117 (694)
63 cd05526 Bromo_polybromo_VI Bro 97.7 9.1E-05 2E-09 73.4 7.7 103 1074-1183 4-106 (110)
64 KOG1973 Chromatin remodeling p 97.5 4.7E-05 1E-09 85.3 2.6 48 1227-1278 220-270 (274)
65 COG5034 TNG2 Chromatin remodel 97.5 4.5E-05 9.8E-10 84.1 1.8 46 29-89 221-269 (271)
66 KOG0957 PHD finger protein [Ge 97.4 5.6E-05 1.2E-09 88.9 1.4 46 1228-1273 546-595 (707)
67 PF02791 DDT: DDT domain; Int 97.3 0.0002 4.2E-09 63.8 3.5 42 701-743 2-43 (61)
68 KOG0383 Predicted helicase [Ge 97.2 0.0001 2.2E-09 91.1 1.4 49 1227-1278 48-96 (696)
69 cd04718 BAH_plant_2 BAH, or Br 97.2 0.00015 3.2E-09 75.2 2.3 27 54-90 1-27 (148)
70 cd05494 Bromodomain_1 Bromodom 97.0 0.00055 1.2E-08 68.0 3.8 57 1074-1138 4-60 (114)
71 KOG0955 PHD finger protein BR1 97.0 0.00041 8.8E-09 89.0 3.1 51 1226-1278 219-271 (1051)
72 smart00571 DDT domain in diffe 96.9 0.0009 1.9E-08 60.1 3.4 36 701-737 2-39 (63)
73 KOG4323 Polycomb-like PHD Zn-f 96.7 0.00068 1.5E-08 80.6 2.1 68 29-102 168-236 (464)
74 cd01397 HAT_MBD Methyl-CpG bin 96.7 0.0018 3.8E-08 60.4 4.2 43 231-273 5-49 (73)
75 COG5034 TNG2 Chromatin remodel 96.7 0.00071 1.5E-08 75.0 1.6 45 1228-1276 223-270 (271)
76 KOG1472 Histone acetyltransfer 96.4 0.002 4.4E-08 80.0 3.6 85 1080-1175 613-697 (720)
77 cd05491 Bromo_TBP7_like Bromod 96.4 0.0038 8.2E-08 62.9 4.6 41 1121-1162 62-102 (119)
78 KOG0957 PHD finger protein [Ge 96.4 0.0022 4.7E-08 76.2 3.2 54 29-89 544-597 (707)
79 KOG1473 Nucleosome remodeling 96.2 0.0037 8E-08 79.7 3.7 47 29-89 344-390 (1414)
80 KOG4323 Polycomb-like PHD Zn-f 96.0 0.0025 5.4E-08 76.0 1.5 51 1228-1278 170-226 (464)
81 KOG4443 Putative transcription 95.9 0.0035 7.6E-08 76.7 1.8 50 29-89 68-117 (694)
82 COG5141 PHD zinc finger-contai 95.7 0.0044 9.5E-08 73.6 1.7 50 1226-1277 193-244 (669)
83 KOG0954 PHD finger protein [Ge 95.7 0.0044 9.6E-08 76.4 1.6 50 28-89 270-320 (893)
84 KOG0954 PHD finger protein [Ge 95.6 0.026 5.7E-07 69.9 7.7 49 1226-1276 271-321 (893)
85 KOG0956 PHD finger protein AF1 95.2 0.0088 1.9E-07 73.4 1.9 63 1227-1294 6-72 (900)
86 cd01395 HMT_MBD Methyl-CpG bin 94.6 0.033 7.2E-07 50.4 3.3 44 231-274 5-49 (60)
87 COG5141 PHD zinc finger-contai 94.4 0.019 4E-07 68.6 1.8 51 27-89 191-242 (669)
88 KOG0956 PHD finger protein AF1 94.3 0.02 4.4E-07 70.4 1.8 47 30-89 6-56 (900)
89 KOG1473 Nucleosome remodeling 93.7 0.034 7.4E-07 71.5 2.2 46 1226-1274 344-389 (1414)
90 KOG4161 Methyl-CpG binding tra 93.4 0.079 1.7E-06 60.2 4.3 46 231-276 18-66 (272)
91 KOG0955 PHD finger protein BR1 93.2 0.097 2.1E-06 68.2 5.2 97 1073-1180 565-661 (1051)
92 KOG1246 DNA-binding protein ju 93.1 0.097 2.1E-06 67.7 5.0 50 1226-1276 155-204 (904)
93 PF13831 PHD_2: PHD-finger; PD 93.0 0.021 4.5E-07 46.7 -0.7 34 1239-1274 2-36 (36)
94 PF13831 PHD_2: PHD-finger; PD 91.4 0.072 1.6E-06 43.6 0.5 34 44-88 3-36 (36)
95 KOG0008 Transcription initiati 90.4 0.31 6.8E-06 64.3 5.1 93 1080-1183 1268-1361(1563)
96 PF14446 Prok-RING_1: Prokaryo 89.9 0.19 4.1E-06 44.9 1.9 32 30-61 6-37 (54)
97 KOG1474 Transcription initiati 87.1 0.32 6.9E-06 61.1 2.0 78 1100-1178 11-88 (640)
98 KOG4628 Predicted E3 ubiquitin 84.3 1.5 3.3E-05 51.7 5.5 46 30-89 230-275 (348)
99 KOG1246 DNA-binding protein ju 84.0 0.96 2.1E-05 58.9 4.1 51 28-90 154-204 (904)
100 KOG1734 Predicted RING-contain 82.2 0.49 1.1E-05 53.8 0.5 76 20-107 215-302 (328)
101 PF15446 zf-PHD-like: PHD/FYVE 80.6 0.9 1.9E-05 48.8 1.7 31 31-61 1-33 (175)
102 KOG0008 Transcription initiati 77.9 1.8 4E-05 57.6 3.6 68 1085-1163 1394-1461(1563)
103 PF11793 FANCL_C: FANCL C-term 76.7 0.75 1.6E-05 42.5 -0.2 57 30-89 3-63 (70)
104 KOG3612 PHD Zn-finger protein 74.7 2.8 6.2E-05 51.6 3.8 49 28-89 59-107 (588)
105 KOG1472 Histone acetyltransfer 73.6 3.1 6.7E-05 53.0 3.9 77 1071-1165 291-367 (720)
106 PF15446 zf-PHD-like: PHD/FYVE 70.5 2.2 4.8E-05 46.0 1.4 48 1228-1275 1-59 (175)
107 KOG0386 Chromatin remodeling c 69.1 5.9 0.00013 52.0 4.9 97 1076-1183 1027-1129(1157)
108 PF13639 zf-RING_2: Ring finge 66.7 1.6 3.6E-05 36.1 -0.3 33 30-63 1-33 (44)
109 KOG1827 Chromatin remodeling c 66.6 6.9 0.00015 49.4 4.8 72 1109-1181 84-155 (629)
110 PF14446 Prok-RING_1: Prokaryo 65.7 3.3 7.2E-05 37.3 1.4 33 1227-1259 6-39 (54)
111 PF13901 DUF4206: Domain of un 62.2 5.5 0.00012 43.6 2.5 44 29-91 152-199 (202)
112 PF07649 C1_3: C1-like domain; 58.0 4.7 0.0001 31.5 0.8 29 31-60 2-30 (30)
113 PF11793 FANCL_C: FANCL C-term 54.5 1.5 3.2E-05 40.5 -2.8 50 1227-1276 3-64 (70)
114 COG1107 Archaea-specific RecJ- 52.9 7.2 0.00016 48.8 1.7 23 29-55 68-90 (715)
115 KOG4628 Predicted E3 ubiquitin 51.1 12 0.00026 44.4 3.1 59 1227-1288 230-288 (348)
116 PF13901 DUF4206: Domain of un 49.6 12 0.00027 40.9 2.6 42 1227-1277 153-199 (202)
117 KOG1734 Predicted RING-contain 47.7 6.4 0.00014 45.2 0.2 62 1215-1278 213-281 (328)
118 PF13832 zf-HC5HC2H_2: PHD-zin 46.6 10 0.00022 37.0 1.4 30 29-61 55-86 (110)
119 COG5243 HRD1 HRD ubiquitin lig 45.5 6.9 0.00015 46.6 -0.0 43 28-90 286-343 (491)
120 PF04216 FdhE: Protein involve 45.5 11 0.00024 43.1 1.5 47 1220-1278 166-222 (290)
121 PF12861 zf-Apc11: Anaphase-pr 45.3 8.9 0.00019 37.4 0.7 47 1229-1277 35-81 (85)
122 KOG1952 Transcription factor N 44.2 7.9 0.00017 50.0 0.2 60 29-95 191-250 (950)
123 PF13771 zf-HC5HC2H: PHD-like 42.6 13 0.00028 34.9 1.3 31 29-62 36-68 (90)
124 KOG1632 Uncharacterized PHD Zn 40.0 13 0.00028 44.1 1.1 47 35-90 65-113 (345)
125 KOG1828 IRF-2-binding protein 39.3 17 0.00036 43.8 1.8 97 1080-1187 26-122 (418)
126 KOG1081 Transcription factor N 38.8 23 0.0005 43.6 2.9 58 27-102 87-144 (463)
127 PHA02929 N1R/p28-like protein; 38.1 15 0.00033 41.6 1.3 48 28-89 173-224 (238)
128 TIGR01562 FdhE formate dehydro 37.9 35 0.00076 40.1 4.1 33 1223-1255 181-224 (305)
129 PF13639 zf-RING_2: Ring finge 37.7 2.2 4.7E-05 35.4 -4.1 43 1227-1274 1-44 (44)
130 PRK03564 formate dehydrogenase 37.4 27 0.00059 41.1 3.1 32 1223-1254 184-225 (309)
131 PF10367 Vps39_2: Vacuolar sor 31.7 31 0.00067 32.8 2.0 31 29-61 78-108 (109)
132 PF07649 C1_3: C1-like domain; 30.4 22 0.00048 27.8 0.6 28 1228-1255 2-29 (30)
133 KOG1844 PHD Zn-finger proteins 29.2 44 0.00096 40.7 3.2 54 30-95 87-140 (508)
134 PF00301 Rubredoxin: Rubredoxi 28.6 27 0.00059 30.7 0.9 17 1260-1277 28-44 (47)
135 PF13832 zf-HC5HC2H_2: PHD-zin 27.9 33 0.00071 33.5 1.5 29 1227-1257 56-86 (110)
136 cd00162 RING RING-finger (Real 27.1 18 0.0004 28.3 -0.3 42 1229-1275 2-43 (45)
137 PF12861 zf-Apc11: Anaphase-pr 23.4 45 0.00097 32.8 1.5 47 30-89 33-79 (85)
138 cd00730 rubredoxin Rubredoxin; 23.1 47 0.001 29.5 1.4 16 1261-1277 29-44 (50)
139 COG1773 Rubredoxin [Energy pro 22.7 54 0.0012 30.0 1.7 42 1227-1277 4-46 (55)
140 PF10367 Vps39_2: Vacuolar sor 22.1 2.1E+02 0.0046 27.2 5.7 31 1226-1257 78-108 (109)
141 PF03107 C1_2: C1 domain; Int 21.0 82 0.0018 24.9 2.2 28 31-60 2-30 (30)
142 PF00130 C1_1: Phorbol esters/ 20.8 86 0.0019 26.8 2.5 34 28-61 10-44 (53)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.59 E-value=1.1e-15 Score=185.09 Aligned_cols=107 Identities=24% Similarity=0.367 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
..+|++|..||++++++..+++|+.|||. +..||++|+.||++|||||||+.+|..|.|. ++..|++|||+
T Consensus 221 ~~~lk~C~~iLk~l~~~k~awpF~~PVD~--------v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~-~~~eF~~DVRL 291 (640)
T KOG1474|consen 221 VELLKQCLSILKRLMKHKHAWPFNEPVDV--------VKLGLPDYHDIIKHPMDLGTIKKKLEKGEYK-SAEEFAADVRL 291 (640)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcCCCcCH--------HhcCCcchhhhcCCCccHHHHHhhhcccccC-CHHHHHHHHHH
Confidence 45999999999999999998888887765 6667999999999999999999999999999 78889999999
Q ss_pred HHhhhhhccCCCchHHHHHHHhhhhhhhhhhhhhHh
Q 047726 1152 FWNNVRTAFGDQPDFVDLAEKLSRNFESLYENEIVT 1187 (1297)
Q Consensus 1152 VWsN~~Tyn~dg~dVv~LAEsLSq~FESrYekqvL~ 1187 (1297)
+|+||++||..+.+|+.||..|...||.+|....+.
T Consensus 292 ~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~ 327 (640)
T KOG1474|consen 292 TFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLE 327 (640)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999975553
No 2
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=99.47 E-value=2.9e-14 Score=123.22 Aligned_cols=48 Identities=38% Similarity=0.793 Sum_probs=34.2
Q ss_pred eccEEEEEeceecCC-CCCCCCCceecCCeEE---EeE--cCCCCeEEEEEEee
Q 047726 370 FEDFFILSLGHVDGR-PSYHNVNVIYPVGYTS---CWH--DKITGSLFICEVLD 417 (1297)
Q Consensus 370 vg~l~v~SLGeI~~~-p~FHse~~IyPVGY~s---~~~--~~~~~~~y~C~IlD 417 (1297)
+|+|+|+|||+|.++ |+||++++|||+||++ ||+ +|..+|.|+|+|+|
T Consensus 1 igsl~v~sLG~i~~~~~~fh~~~~IyP~Gy~s~R~y~S~~~p~~~~~Y~~~Ild 54 (54)
T PF05964_consen 1 IGSLTVHSLGKIVPDRPAFHSERYIYPVGYKSSRLYWSTVDPRRRCRYTCEILD 54 (54)
T ss_dssp -TTEEEEEEEE---SSGGGB-SS-B--EEEEEEEEEE-SS-TTSEEEEEEEEE-
T ss_pred CCceEEEECeEEeCCCCCccCCCEEeeCCEEEEEEEccccCCCCEEEEEEEEeC
Confidence 589999999999999 7999999999999999 777 55566999999997
No 3
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.45 E-value=1.3e-13 Score=130.45 Aligned_cols=99 Identities=26% Similarity=0.375 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHH
Q 047726 1074 IMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFW 1153 (1297)
Q Consensus 1074 imKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVW 1153 (1297)
+|++|+.||+.+++++.+.+|..|++ ....+.++|..+|.+||||+||..||..+.|. +...|.+|++++|
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~--------~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~-s~~ef~~D~~li~ 71 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVD--------VVALGLPDYFDIIKKPMDLGTVKKKLEKGEYS-SPEEFAADVRLTF 71 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCC--------ccccCCCCHHHHHcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHH
Confidence 48999999999999998888877764 35567999999999999999999999999999 8889999999999
Q ss_pred hhhhhccCCCchHHHHHHHhhhhhhhhh
Q 047726 1154 NNVRTAFGDQPDFVDLAEKLSRNFESLY 1181 (1297)
Q Consensus 1154 sN~~Tyn~dg~dVv~LAEsLSq~FESrY 1181 (1297)
.|+..||+.++.++.+|..|.+.||.+|
T Consensus 72 ~Na~~yn~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 72 ANAMRYNPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999876
No 4
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.41 E-value=4.8e-13 Score=132.11 Aligned_cols=106 Identities=22% Similarity=0.313 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
+...++|+.||..++.++.+.+|..||+. .++|+|..+|++||||+||..+|..|.|. +...|..||++
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~----------~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~-~~~ef~~D~~l 72 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDL----------LKYPDYRDIIDTPMDLGTVKETLFGGNYD-DPMEFAKDVRL 72 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCCh----------hhcCcHHHHhCCcccHHHHHHHHhCCCCC-CHHHHHHHHHH
Confidence 35678999999999999999999998764 25899999999999999999999999999 88889999999
Q ss_pred HHhhhhhccCC-CchHHHHHHHhhhhhhhhhhhhhHhH
Q 047726 1152 FWNNVRTAFGD-QPDFVDLAEKLSRNFESLYENEIVTL 1188 (1297)
Q Consensus 1152 VWsN~~Tyn~d-g~dVv~LAEsLSq~FESrYekqvL~l 1188 (1297)
+|.|+.+||.. ++.|+.+|..|...|+.++.+.+..+
T Consensus 73 if~Na~~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 73 IFSNSKSYTPNKRSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999985 88999999999999999988765544
No 5
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.40 E-value=5.8e-13 Score=129.15 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHhC-CCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAA-DDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVR 1150 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss-~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVr 1150 (1297)
+.+.++|..++..++.+ +.+.+|..||+. ...++++|..+|++||||+||..++..|.|. +...|..|++
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~--------~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~-s~~ef~~D~~ 72 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDP--------KLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQ-DPWQYVDDVW 72 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCc--------cccCCCcHHHHhCCCCCHHHHHHHHhcCCCC-CHHHHHHHHH
Confidence 56789999999999988 998989888765 5567999999999999999999999999999 7888999999
Q ss_pred HHHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1151 EFWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1151 eVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
++|+||..||+.++.++.+|..|.+.|++.+..
T Consensus 73 li~~Na~~yN~~~s~i~~~a~~l~~~F~~~~~~ 105 (108)
T cd05495 73 LMFDNAWLYNRKTSRVYKYCTKLAEVFEQEIDP 105 (108)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987653
No 6
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.39 E-value=6.5e-13 Score=126.15 Aligned_cols=96 Identities=24% Similarity=0.448 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHh
Q 047726 1075 MKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWN 1154 (1297)
Q Consensus 1075 mKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWs 1154 (1297)
+..|+.||..++.++.+.+|..|++. ..+++|..+|++||||+||..++..|.|. +...|.+|++++|+
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~----------~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D~~li~~ 70 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNT----------KLVPGYRKIIKKPMDFSTIREKLESGQYK-TLEEFAEDVRLVFD 70 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCc----------cccCCHHHHhCCCCCHHHHHHHHccCCCC-CHHHHHHHHHHHHH
Confidence 56899999999999999999998754 24899999999999999999999999998 88999999999999
Q ss_pred hhhhccCCCchHHHHHHHhhhhhhhhh
Q 047726 1155 NVRTAFGDQPDFVDLAEKLSRNFESLY 1181 (1297)
Q Consensus 1155 N~~Tyn~dg~dVv~LAEsLSq~FESrY 1181 (1297)
|+..||+.++.++.+|..|.+.|+++|
T Consensus 71 Na~~yN~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 71 NCETFNEDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999875
No 7
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.35 E-value=1.3e-12 Score=124.74 Aligned_cols=95 Identities=16% Similarity=0.311 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHh
Q 047726 1075 MKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWN 1154 (1297)
Q Consensus 1075 mKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWs 1154 (1297)
.+.|..||..++.++.+.+|..|++. .++++|..+|++||||+||..++..|.|. +...|.+|++++|.
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~----------~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~D~~li~~ 70 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTA----------DEAEDYKKVITNPMDLQTMQTKCSCGSYS-SVQEFLDDMKLVFS 70 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCCh----------hhcccHHHHcCCcCCHHHHHHHHcCCCCC-CHHHHHHHHHHHHH
Confidence 47899999999999999999888763 35899999999999999999999999999 88899999999999
Q ss_pred hhhhccCCCchHHHHHHHhhhhhhhh
Q 047726 1155 NVRTAFGDQPDFVDLAEKLSRNFESL 1180 (1297)
Q Consensus 1155 N~~Tyn~dg~dVv~LAEsLSq~FESr 1180 (1297)
|+..||+.++.+...|..|.+.|.++
T Consensus 71 Na~~yN~~~s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 71 NAEKYYENGSYVLSCMRKTEQCCVNL 96 (97)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999888754
No 8
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.35 E-value=1.5e-12 Score=124.00 Aligned_cols=98 Identities=22% Similarity=0.343 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhC---CCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1075 MKQCRIVLRQAAAA---DDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1075 mKRCr~VLr~l~ss---~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
++.|..||..++++ +.+.+|..|+ |+...+.++|..+|.+||||++|..++..|.|. +...|..|+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv--------~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~-s~~ef~~D~~l 72 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPV--------DPEALGLHDYHDIIKHPMDLSTIKKKLDNREYA-DAQEFAADVRL 72 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcC--------CccccCCCcHHHHccCCCcHHHHHHHHccCCCC-CHHHHHHHHHH
Confidence 57899999999998 5556666654 446678999999999999999999999999999 88899999999
Q ss_pred HHhhhhhccCCCchHHHHHHHhhhhhhhhh
Q 047726 1152 FWNNVRTAFGDQPDFVDLAEKLSRNFESLY 1181 (1297)
Q Consensus 1152 VWsN~~Tyn~dg~dVv~LAEsLSq~FESrY 1181 (1297)
+|+|+..||+.++.++.+|..|.+.|+++|
T Consensus 73 i~~Na~~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 73 MFSNCYKYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999876
No 9
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.34 E-value=2e-12 Score=124.95 Aligned_cols=95 Identities=18% Similarity=0.353 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHh
Q 047726 1075 MKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWN 1154 (1297)
Q Consensus 1075 mKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWs 1154 (1297)
+++|..||..+.+++.+..|... + .++++|..+|++||||+||..++..|.|. +...|.+||+++|+
T Consensus 4 l~~ce~il~~l~~~~~s~~f~~~----------p--~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~-s~~ef~~D~~Lif~ 70 (102)
T cd05501 4 LLKCEFLLLKVYCMSKSGFFISK----------P--YYIRDYCQGIKEPMWLNKVKERLNERVYH-TVEGFVRDMRLIFH 70 (102)
T ss_pred HHHHHHHHHHHHhCcccccccCC----------C--CCCCchHHHcCCCCCHHHHHHHHcCCCCC-CHHHHHHHHHHHHH
Confidence 56799999999888888887442 1 26899999999999999999999999999 88999999999999
Q ss_pred hhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1155 NVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1155 N~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
||.+||+.+ .+..+|..|+..|+.+|.+
T Consensus 71 N~~~yN~~~-~~~~~a~~L~~~Fek~~~~ 98 (102)
T cd05501 71 NHKLFYKDD-DFGQVGITLEKKFEKNFKE 98 (102)
T ss_pred HHHHHcCCC-HHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999998875
No 10
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.32 E-value=3.8e-12 Score=122.04 Aligned_cols=100 Identities=20% Similarity=0.272 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
+.-.++|..+++.++.++.+.+|..|++ +..++.++|..+|.+||||++|..++..|.|. +...|..|+++
T Consensus 3 ~~~~~~~~~ii~~l~~~~~a~~F~~pv~--------~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~-s~~~f~~D~~l 73 (103)
T cd05500 3 KHQHKFLLSSIRSLKRLKDARPFLVPVD--------PVKLNIPHYPTIIKKPMDLGTIERKLKSNVYT-SVEEFTADFNL 73 (103)
T ss_pred HHHHHHHHHHHHHHHcCCCChhhcCCCC--------cccccCCCHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHH
Confidence 5678999999999999999888888765 46688999999999999999999999999997 88889999999
Q ss_pred HHhhhhhccCCCchHHHHHHHhhhhhhhh
Q 047726 1152 FWNNVRTAFGDQPDFVDLAEKLSRNFESL 1180 (1297)
Q Consensus 1152 VWsN~~Tyn~dg~dVv~LAEsLSq~FESr 1180 (1297)
+|+|+..||+.++.++.+|..|.+.||..
T Consensus 74 i~~Na~~yN~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 74 MVDNCLTFNGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998864
No 11
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.32 E-value=3.6e-12 Score=121.67 Aligned_cols=101 Identities=23% Similarity=0.348 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHh
Q 047726 1075 MKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWN 1154 (1297)
Q Consensus 1075 mKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWs 1154 (1297)
++.|..||..++..+. .+...+|++++|+...+.++|..+|.+||||++|..++..+.|. +...|..|++++|.
T Consensus 2 ~~~c~~Il~~l~~~~~-----~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~-s~~ef~~D~~li~~ 75 (102)
T cd05499 2 LKFCEEVLKELMKPKH-----SAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQ-SAKEFERDVRLIFK 75 (102)
T ss_pred hHHHHHHHHHHHcccC-----CcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCC-CHHHHHHHHHHHHH
Confidence 5789999999998542 12334444455556678999999999999999999999999998 88899999999999
Q ss_pred hhhhccCCCchHHHHHHHhhhhhhhhh
Q 047726 1155 NVRTAFGDQPDFVDLAEKLSRNFESLY 1181 (1297)
Q Consensus 1155 N~~Tyn~dg~dVv~LAEsLSq~FESrY 1181 (1297)
|+..||+.++.++.+|..|.+.|+.+|
T Consensus 76 N~~~yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 76 NCYTFNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999875
No 12
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.32 E-value=2.5e-12 Score=124.67 Aligned_cols=95 Identities=20% Similarity=0.205 Sum_probs=84.9
Q ss_pred HHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhhhhh
Q 047726 1079 RIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRT 1158 (1297)
Q Consensus 1079 r~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN~~T 1158 (1297)
+.||..+..++.+.+|..||+ +...|+|+|..+|++||||+||..++..+.|. +...|..|++++|+||..
T Consensus 11 ~~il~~l~~~~~s~~F~~PVd--------~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~-s~~ef~~D~~li~~Na~~ 81 (107)
T cd05497 11 KVVLKALWKHKFAWPFQQPVD--------AVKLNLPDYHKIIKTPMDLGTIKKRLENNYYW-SASECIQDFNTMFTNCYI 81 (107)
T ss_pred HHHHHHHHhCCcCccccCCCC--------cccccCCcHHHHHcCcccHHHHHHHHcCCCCC-CHHHHHHHHHHHHHHHHH
Confidence 467888888888777777765 46678999999999999999999999999998 788899999999999999
Q ss_pred ccCCCchHHHHHHHhhhhhhhhhh
Q 047726 1159 AFGDQPDFVDLAEKLSRNFESLYE 1182 (1297)
Q Consensus 1159 yn~dg~dVv~LAEsLSq~FESrYe 1182 (1297)
||+.++.++.+|..|.+.|+.+..
T Consensus 82 yN~~~s~i~~~A~~l~~~f~~~l~ 105 (107)
T cd05497 82 YNKPGDDVVLMAQTLEKLFLQKLA 105 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887754
No 13
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.31 E-value=3.5e-12 Score=125.06 Aligned_cols=101 Identities=17% Similarity=0.273 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
...++.|..||..++..+.+++|..|++. .++++|..+|++||||+||..++..|.|. +...|.+|+++
T Consensus 11 ~~~~~~c~~il~~l~~~~~s~~F~~pvd~----------~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~-s~~~f~~Dv~L 79 (115)
T cd05504 11 PLNLSALEQLLVEIVKHKDSWPFLRPVSK----------IEVPDYYDIIKKPMDLGTIKEKLNMGEYK-LAEEFLSDIQL 79 (115)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCCCCc----------cccccHHHHhcCcccHHHHHHHHccCCCC-CHHHHHHHHHH
Confidence 35788999999999999999999888763 36899999999999999999999999998 78899999999
Q ss_pred HHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1152 FWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1152 VWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
+|+|+.+||+.++.++.+|..|.+.|++++++
T Consensus 80 I~~Na~~yN~~~s~i~~~A~~l~~~f~~~~~~ 111 (115)
T cd05504 80 VFSNCFLYNPEHTSVYKAGTRLQRFFIKRCRK 111 (115)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999875
No 14
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.29 E-value=6.1e-12 Score=119.69 Aligned_cols=99 Identities=20% Similarity=0.343 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHH
Q 047726 1074 IMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFW 1153 (1297)
Q Consensus 1074 imKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVW 1153 (1297)
+.++|+.|+..++.++.+.+|..|++. ..+++|..+|++||||+||..++..+.|. +...|..||+++|
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~----------~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~-s~~~f~~Dv~li~ 70 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDK----------EEAPDYYDVIKKPMDLSTMEEKLENGYYV-TLEEFVADLKLIF 70 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCCh----------hhcCCHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHH
Confidence 467999999999999999999999764 23899999999999999999999999998 8899999999999
Q ss_pred hhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1154 NNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1154 sN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
+||.+||+.++.++.+|..|.+.|+++..+
T Consensus 71 ~Na~~yN~~~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 71 DNCRLYNGPDTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999987653
No 15
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=99.28 E-value=2.2e-12 Score=119.87 Aligned_cols=73 Identities=37% Similarity=0.601 Sum_probs=45.8
Q ss_pred CceEEecCCchHHHHHHHHHHHHHHHHHHhhcCceeeeccccccccccccccchhhhhhhhhhhhhhccCCCCccccCcc
Q 047726 508 GEISVEDRSLSSAWRRLSQKFVDACFEICKQKGVLKFSCKHIENSREFANWDMVDEKEKMRFTSLNKFCGSSVSVSIPSE 587 (1297)
Q Consensus 508 ge~~~e~~s~~s~W~~v~~k~~~~c~~~~k~~g~l~~~c~h~~~~~~~~~~~~~~~~~~~~~~~~~~fc~~~~p~~i~~~ 587 (1297)
.++.++|.|++.+| ++++++..+++++.+.++.. +.++.
T Consensus 14 p~~~~~g~s~~~~W----~~i~~~v~~~r~~~~~~~~~-----------------------------------~~~is-- 52 (86)
T PF05965_consen 14 PGEVFEGSSPTEAW----SEILERVNEARKQSGLLKLP-----------------------------------PNSIS-- 52 (86)
T ss_dssp GGG-EEESSHHHHH----HHHHHHHHHHHT-------T-----------------------------------T------
T ss_pred CCCEEEeCCHHHHH----HHHHHHHHHHHhhccccccC-----------------------------------CCCCC--
Confidence 56889999999999 55555556666666655554 44566
Q ss_pred cCCcchhhhHHHHHhhhcccccccCCHHHHHHHHHhCCCCcccccchhhccc
Q 047726 588 FRGDNELDMLADVLLKWLDQDRFGLEAEFVQEVIEQLPGVKDCSQYEFLIDR 639 (1297)
Q Consensus 588 ~~~~~~~~~~~~~l~~wl~qDrfGLd~~fVqeiiE~LPgv~~c~~Y~fl~~R 639 (1297)
|.+.|||+.+.|+++||+|||++.|++|+|+++|
T Consensus 53 ------------------G~~~FGls~p~V~~lie~Lp~a~~c~~Y~f~~~~ 86 (86)
T PF05965_consen 53 ------------------GPEMFGLSNPAVQRLIESLPGADKCSNYKFRYGR 86 (86)
T ss_dssp ------------------HHHHHSTTSHHHHHHHTTSTTGGG-TT-------
T ss_pred ------------------HhHhcCCCCHHHHHHHHhCCCcchhhcCCccccC
Confidence 9999999999999999999999999999999987
No 16
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.28 E-value=1.1e-11 Score=120.01 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcc---cccCCCchhHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAV---GAYDGSHDSFLQD 1148 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAa---GaY~GS~e~FaED 1148 (1297)
..-.++|..||..++.++.+.+|..|++. +.++|..+|.+||||+||..++.. |.|. +...|..|
T Consensus 3 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~-----------~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~-s~~~f~~D 70 (109)
T cd05502 3 PIDQRKCERLLLELYCHELSLPFHEPVSP-----------SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYS-SPEEFVAD 70 (109)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCCC-----------CCCCHHHHCCCCccHHHHHHHHhcCCCCCCC-CHHHHHHH
Confidence 45678999999999999998888888643 489999999999999999999998 5888 88889999
Q ss_pred HHHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhhh
Q 047726 1149 VREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYENE 1184 (1297)
Q Consensus 1149 VreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYekq 1184 (1297)
++++|+|+..||+.++.++.+|..|.+.|+.++.++
T Consensus 71 ~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 71 VRLMFKNCYKFNEEDSEVAQAGKELELFFEEQLKEI 106 (109)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998765
No 17
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.27 E-value=1e-11 Score=119.63 Aligned_cols=100 Identities=23% Similarity=0.251 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
+..-+.|..|+..+..++.+.+|..|++. ++.|+|..+|++||||+||..|+..|.|. +..+|..|+++
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~----------~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~D~~l 70 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTE----------DIAPGYHSVVYRPMDLSTIKKNIENGTIR-STAEFQRDVLL 70 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCc----------cccCCHHHHhCCCcCHHHHHHHHhcCCCC-CHHHHHHHHHH
Confidence 34568999999999999999999999753 46899999999999999999999999998 88999999999
Q ss_pred HHhhhhhccCCCchHHHHHHHhhhhhhhhhh
Q 047726 1152 FWNNVRTAFGDQPDFVDLAEKLSRNFESLYE 1182 (1297)
Q Consensus 1152 VWsN~~Tyn~dg~dVv~LAEsLSq~FESrYe 1182 (1297)
+|+|+.+||+.+..++.+|..|...|.++..
T Consensus 71 i~~Na~~yN~~~s~v~~~A~~l~~~~~~~~~ 101 (104)
T cd05507 71 MFQNAIMYNSSDHDVYLMAVEMQREVMSQIQ 101 (104)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999887665543
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.25 E-value=1.6e-11 Score=118.90 Aligned_cols=99 Identities=19% Similarity=0.258 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhCCC------chhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHH
Q 047726 1074 IMKQCRIVLRQAAAADD------EKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQ 1147 (1297)
Q Consensus 1074 imKRCr~VLr~l~ss~~------s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaE 1147 (1297)
+.++|+.||..++.... +++|..+ ++ ..++|+|..+|++||||+||..++..|.|. +...|..
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~--------p~--~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~-s~~ef~~ 70 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQL--------PS--RKELPEYYELIRKPVDFKKIKERIRNHKYR-SLEDLEK 70 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcC--------CC--cccCCCHHHHcCCCCCHHHHHHHHccCCCC-CHHHHHH
Confidence 67899999999997766 4555554 32 247899999999999999999999999999 8888999
Q ss_pred HHHHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1148 DVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1148 DVreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
|++++|.|+..||..++.++..|..|...|+..+++
T Consensus 71 D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 71 DVMLLCQNAQTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999988764
No 19
>smart00542 FYRC "FY-rich" domain, C-terminal region. is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=99.20 E-value=1.5e-11 Score=115.22 Aligned_cols=75 Identities=28% Similarity=0.466 Sum_probs=62.8
Q ss_pred ceEEecCCchHHHHHHHHHHHHHHHHHHhhcCceeeeccccccccccccccchhhhhhhhhhhhhhccCCCCccccCccc
Q 047726 509 EISVEDRSLSSAWRRLSQKFVDACFEICKQKGVLKFSCKHIENSREFANWDMVDEKEKMRFTSLNKFCGSSVSVSIPSEF 588 (1297)
Q Consensus 509 e~~~e~~s~~s~W~~v~~k~~~~c~~~~k~~g~l~~~c~h~~~~~~~~~~~~~~~~~~~~~~~~~~fc~~~~p~~i~~~~ 588 (1297)
+++++|.|+..+| +++++...+.+++++.+.++ +.+|.
T Consensus 11 ~~~~~~~S~~~~W----~~vl~~v~~~r~~~~~~~~~-----------------------------------~~~is--- 48 (86)
T smart00542 11 DEVFKGESPEKCW----EMVLERVQEARIVARLLQLL-----------------------------------PEGVS--- 48 (86)
T ss_pred CCeEEeCCHHHHH----HHHHHHHHHHHHHcccCCCC-----------------------------------CCCCC---
Confidence 7999999999999 55555555566666766665 33455
Q ss_pred CCcchhhhHHHHHhhhcccccccCCHHHHHHHHHhCCCCcccccchhhcccCcc
Q 047726 589 RGDNELDMLADVLLKWLDQDRFGLEAEFVQEVIEQLPGVKDCSQYEFLIDRSCY 642 (1297)
Q Consensus 589 ~~~~~~~~~~~~l~~wl~qDrfGLd~~fVqeiiE~LPgv~~c~~Y~fl~~R~~~ 642 (1297)
|+|.|||+.+.|+.+||+|||++.|.+|+|+++|++.
T Consensus 49 -----------------G~~mFGls~p~V~~lie~Lpga~~C~~Y~~~~~~~~~ 85 (86)
T smart00542 49 -----------------GEDMFGLSSPAVVKLIEQLPGVHQCTNYWFRYHRSPE 85 (86)
T ss_pred -----------------cHHHhCCCcHHHHHHHHhCCCchhhhhhhhccCCCCC
Confidence 8999999999999999999999999999999999875
No 20
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.17 E-value=5.1e-11 Score=116.66 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHhC-CCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAA-DDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVR 1150 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss-~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVr 1150 (1297)
..+.++|+.|+..+..+ +.+.+|..|++. .++++|..+|++||||+||..++..|.|. +...|.+|++
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D~~ 74 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSK----------REAPDYYDIIKKPMDLGTMLKKLKNLQYK-SKAEFVDDLN 74 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCCh----------hhcCCHHHHhcCccCHHHHHHHHhCCCCC-CHHHHHHHHH
Confidence 45788999999999998 888888888764 35899999999999999999999999999 8899999999
Q ss_pred HHHhhhhhccCCCc-hHHHHHHHhhhhhhhhhh
Q 047726 1151 EFWNNVRTAFGDQP-DFVDLAEKLSRNFESLYE 1182 (1297)
Q Consensus 1151 eVWsN~~Tyn~dg~-dVv~LAEsLSq~FESrYe 1182 (1297)
++|.||..||+.++ .++.+|..|.+.|+....
T Consensus 75 Li~~N~~~yN~~~s~~~~~~A~~l~~~~~~~~~ 107 (112)
T cd05510 75 LIWKNCLLYNSDPSHPLRRHANFMKKKAEHLLK 107 (112)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999765 567889999888776644
No 21
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.13 E-value=1.2e-10 Score=111.99 Aligned_cols=94 Identities=21% Similarity=0.315 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHH
Q 047726 1074 IMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFW 1153 (1297)
Q Consensus 1074 imKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVW 1153 (1297)
+-+..+.++..+. ++.+++|..|++. ..+++|..+|++||||+||+.++..|.|. +.+.|.+|++++|
T Consensus 4 l~~~L~~~~~~~~-~~~s~~F~~PV~~----------~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~Dv~LI~ 71 (99)
T cd05508 4 LSKLLKFALERMK-QPGAEPFLKPVDL----------EQFPDYAQYVFKPMDLSTLEKNVRKKAYG-STDAFLADAKWIL 71 (99)
T ss_pred HHHHHHHHHHHHh-CcCcchhcCCCCh----------hhCCCHHHHcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHH
Confidence 3345566777776 8888888888764 25899999999999999999999999999 8899999999999
Q ss_pred hhhhhccCCCchHHHHHHHhhhhhhh
Q 047726 1154 NNVRTAFGDQPDFVDLAEKLSRNFES 1179 (1297)
Q Consensus 1154 sN~~Tyn~dg~dVv~LAEsLSq~FES 1179 (1297)
+|+..||+.++.++.+|..|.+.|+.
T Consensus 72 ~Na~~YN~~~s~i~~~A~~l~~~~~~ 97 (99)
T cd05508 72 HNAIIYNGGDHKLTQAAKAIVKICEQ 97 (99)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998877653
No 22
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.12 E-value=9.4e-11 Score=112.41 Aligned_cols=91 Identities=20% Similarity=0.269 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHH
Q 047726 1074 IMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFW 1153 (1297)
Q Consensus 1074 imKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVW 1153 (1297)
+-+.|..|++.+..++.+..|..|++. ..+|+|.++|++||||+||..|+..+.|. +...|.+|++++|
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~----------~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~-s~~~f~~D~~li~ 70 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTD----------FIAPGYSSIIKHPMDFSTMKEKIKNNDYQ-SIEEFKDDFKLMC 70 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCc----------cccccHHHHHcCccCHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Confidence 346788999999999999999999863 34799999999999999999999999999 8899999999999
Q ss_pred hhhhhccCCCchHHHHHHHhhh
Q 047726 1154 NNVRTAFGDQPDFVDLAEKLSR 1175 (1297)
Q Consensus 1154 sN~~Tyn~dg~dVv~LAEsLSq 1175 (1297)
+|+..||+.++.++.+|..|.+
T Consensus 71 ~Na~~yN~~~s~~~~~A~~L~~ 92 (98)
T cd05513 71 ENAMKYNKPDTIYYKAAKKLLH 92 (98)
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
Confidence 9999999999999999998865
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.10 E-value=1.7e-10 Score=110.67 Aligned_cols=102 Identities=20% Similarity=0.269 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHh
Q 047726 1075 MKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWN 1154 (1297)
Q Consensus 1075 mKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWs 1154 (1297)
-++|+.|+..++..... =.+++..+|++++ .....++|..+|++||||++|..++..|.|. +...|..|++++|+
T Consensus 2 ~~~~~~i~~~v~~~~~~--~~~~~~~~F~~~p--~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~-s~~~f~~D~~li~~ 76 (103)
T cd05519 2 KAAMLEIYDAVLNCEDE--TGRKLSELFLEKP--SKKLYPDYYVIIKRPIALDQIKRRIEGRAYK-SLEEFLEDFHLMFA 76 (103)
T ss_pred HHHHHHHHHHHHHhcCc--CCCchhHHhcCCC--CCCCCcCHHHHcCCCcCHHHHHHHHccCCCC-CHHHHHHHHHHHHH
Confidence 47899999999854430 0122223333333 2345899999999999999999999999999 88889999999999
Q ss_pred hhhhccCCCchHHHHHHHhhhhhhhhh
Q 047726 1155 NVRTAFGDQPDFVDLAEKLSRNFESLY 1181 (1297)
Q Consensus 1155 N~~Tyn~dg~dVv~LAEsLSq~FESrY 1181 (1297)
|+.+||+.++.++.+|..|.+.|+.+|
T Consensus 77 Na~~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 77 NARTYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998876
No 24
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.09 E-value=1.7e-10 Score=113.03 Aligned_cols=98 Identities=21% Similarity=0.243 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhh
Q 047726 1076 KQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNN 1155 (1297)
Q Consensus 1076 KRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN 1155 (1297)
..|+.|+..+++++.+.+|..|++. +.+++|..+|++||||+||..|+..+.|. +...|..|++++|+|
T Consensus 6 ~~L~~il~~l~~~~~~~~F~~pv~~----------~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~-s~~ef~~Dv~li~~N 74 (112)
T cd05528 6 LFLRDVLKRLASDKRFNAFTKPVDE----------EEVPDYYEIIKQPMDLQTILQKLDTHQYL-TAKDFLKDIDLIVTN 74 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCCc----------cccCcHHHHHcCCCCHHHHHHHHcCCCcC-CHHHHHHHHHHHHHH
Confidence 4578899999999999999999764 24899999999999999999999999998 888999999999999
Q ss_pred hhhccCCC----chHHHHHHHhhhhhhhhhhhh
Q 047726 1156 VRTAFGDQ----PDFVDLAEKLSRNFESLYENE 1184 (1297)
Q Consensus 1156 ~~Tyn~dg----~dVv~LAEsLSq~FESrYekq 1184 (1297)
|..||+.+ +.++..|..|.+.|..++.+.
T Consensus 75 a~~yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 75 ALEYNPDRDPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred HHHHCCCCCccccHHHHHHHHHHHHHHHHHHhc
Confidence 99999984 689999999999888877653
No 25
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.08 E-value=2.2e-10 Score=110.63 Aligned_cols=103 Identities=12% Similarity=0.135 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHh
Q 047726 1075 MKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWN 1154 (1297)
Q Consensus 1075 mKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWs 1154 (1297)
+++|+.|+..+....... -+++..+|+.++ ...+.|+|..+|++||||+||..++..+.|. +...|..|++++|.
T Consensus 2 ~~~~~~~~~~i~~~~d~~--~~~~a~~F~~~p--~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D~~l~~~ 76 (105)
T cd05515 2 QQKLWELYNAVKNYTDGR--GRRLSLIFMRLP--SKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQ-SLDDMVSDFVLMFD 76 (105)
T ss_pred hHHHHHHHHHHHHhhCcC--CCcccHHhccCC--CcccCCcHHHHcCCCcCHHHHHHHHccCCCC-CHHHHHHHHHHHHH
Confidence 578999999998655432 234444455443 3457899999999999999999999999998 78899999999999
Q ss_pred hhhhccCCCchHHHHHHHhhhhhhhhhh
Q 047726 1155 NVRTAFGDQPDFVDLAEKLSRNFESLYE 1182 (1297)
Q Consensus 1155 N~~Tyn~dg~dVv~LAEsLSq~FESrYe 1182 (1297)
|+.+||..++.++..|..|.+.|.+.+.
T Consensus 77 Na~~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 77 NACKYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999998887654
No 26
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.06 E-value=3.7e-10 Score=110.67 Aligned_cols=101 Identities=20% Similarity=0.225 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhCCCc------hhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHH
Q 047726 1074 IMKQCRIVLRQAAAADDE------KVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQ 1147 (1297)
Q Consensus 1074 imKRCr~VLr~l~ss~~s------~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaE 1147 (1297)
+.+.|..|++.+...... .+|+++ +...+.|+|..+|++||||+||..|+..+.|. +...|..
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~----------p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~-s~~~f~~ 71 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRV----------PKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYD-DVDDLTA 71 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcC----------CCcccCCCHHHHhCCccCHHHHHHHhCcCCCC-CHHHHHH
Confidence 578999999999854333 334443 23467899999999999999999999999999 8888999
Q ss_pred HHHHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhhhh
Q 047726 1148 DVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYENEI 1185 (1297)
Q Consensus 1148 DVreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYekqv 1185 (1297)
|++++|+|+..||..++.++..|..|.+.|+..+.+.+
T Consensus 72 D~~lm~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 72 DFELLINNAKAYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998876543
No 27
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.05 E-value=3e-10 Score=108.81 Aligned_cols=90 Identities=20% Similarity=0.254 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhh
Q 047726 1076 KQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNN 1155 (1297)
Q Consensus 1076 KRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN 1155 (1297)
..++.+|..+..++.+.+|..|++. ..+++|..+|++||||+||..|+..+.|. +...|..|++++|+|
T Consensus 4 ~~l~~il~~l~~~~~~~~F~~pVd~----------~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~D~~li~~N 72 (98)
T cd05512 4 VLLRKTLDQLQEKDTAEIFSEPVDL----------SEVPDYLDHIKQPMDFSTMRKKLESQRYR-TLEDFEADFNLIINN 72 (98)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCCc----------cccCCHHHHhcCCcCHHHHHHHHhCCCCC-CHHHHHHHHHHHHHH
Confidence 3577899999999999999999864 24899999999999999999999999999 789999999999999
Q ss_pred hhhccCCCchHHHHHHHhhhh
Q 047726 1156 VRTAFGDQPDFVDLAEKLSRN 1176 (1297)
Q Consensus 1156 ~~Tyn~dg~dVv~LAEsLSq~ 1176 (1297)
|..||+.++.++..|..|.+.
T Consensus 73 a~~yN~~~s~~~~~A~~l~~~ 93 (98)
T cd05512 73 CLAYNAKDTIFYRAAVRLRDQ 93 (98)
T ss_pred HHHHCCCCCHHHHHHHHHHHh
Confidence 999999999999999888753
No 28
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.02 E-value=7e-10 Score=107.78 Aligned_cols=103 Identities=13% Similarity=0.205 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHH
Q 047726 1073 IIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREF 1152 (1297)
Q Consensus 1073 limKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreV 1152 (1297)
.+.++|+.|+..+....... .+++..+|+.+++ ....|+|..+|.+||||.+|..++..|.|. +...|.+|++++
T Consensus 2 ~l~~~l~~i~~~i~~~kd~~--g~~~s~~F~~lp~--k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~-s~~ef~~D~~l~ 76 (106)
T cd05525 2 RLAQVLKEICDAIITYKDSN--GQSLAIPFINLPS--KKKNPDYYERITDPVDLSTIEKQILTGYYK-TPEAFDSDMLKV 76 (106)
T ss_pred hHHHHHHHHHHHHHHhhccC--CCcccHhhccCCC--cccCCchhhhCCCCcCHHHHHHHHcCCCCC-CHHHHHHHHHHH
Confidence 35678889999888654432 3444555666543 357899999999999999999999999999 899999999999
Q ss_pred HhhhhhccCCCchHHHHHHHhhhhhhhh
Q 047726 1153 WNNVRTAFGDQPDFVDLAEKLSRNFESL 1180 (1297)
Q Consensus 1153 WsN~~Tyn~dg~dVv~LAEsLSq~FESr 1180 (1297)
|.|+..||.+++.++..|..|.+.|+..
T Consensus 77 f~Na~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 77 FRNAEKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999988753
No 29
>smart00297 BROMO bromo domain.
Probab=99.00 E-value=8.6e-10 Score=104.33 Aligned_cols=100 Identities=23% Similarity=0.339 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHH
Q 047726 1073 IIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREF 1152 (1297)
Q Consensus 1073 limKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreV 1152 (1297)
.+.+.|..|+..+..++.+.+|..|++. ...++|..+|.+||||++|..|+..|.|. +...|..|++++
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~F~~~~~~----------~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~-s~~ef~~D~~li 75 (107)
T smart00297 7 KLQSLLKAVLDKLDSHRLSWPFLKPVDR----------KEAPDYYDIIKKPMDLSTIKKKLENGKYS-SVEEFVADVQLM 75 (107)
T ss_pred HHHHHHHHHHHHHHhCccchhhccCCCh----------hhccCHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHH
Confidence 4667888888888888888888888654 12789999999999999999999999998 888999999999
Q ss_pred HhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1153 WNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1153 WsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
|+|+..||+.++.++..|..|.+.|++.+.+
T Consensus 76 ~~Na~~~n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 76 FSNAKTYNGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999987653
No 30
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.98 E-value=7.7e-10 Score=108.18 Aligned_cols=94 Identities=18% Similarity=0.291 Sum_probs=85.0
Q ss_pred HHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhhhhh
Q 047726 1079 RIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRT 1158 (1297)
Q Consensus 1079 r~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN~~T 1158 (1297)
+.|+..+++++.+.+|..|++. ...|+|..+|++||||+||..++..+.|. +...|..|++++|+||..
T Consensus 6 ~~ii~~l~~~~~s~~F~~pv~~----------~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~-s~~ef~~Dv~li~~Na~~ 74 (112)
T cd05511 6 DEIVNELKNLPDSWPFHTPVNK----------KKVPDYYKIIKRPMDLQTIRKKISKHKYQ-SREEFLEDIELIVDNSVL 74 (112)
T ss_pred HHHHHHHHhCCCchhhcCCCCh----------hhcccHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHH
Confidence 4688889999999999998764 24799999999999999999999999998 889999999999999999
Q ss_pred ccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1159 AFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1159 yn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
||+.++.++..|..|.+.|+..+..
T Consensus 75 yN~~~s~i~~~A~~l~~~~~~~~~~ 99 (112)
T cd05511 75 YNGPDSVYTKKAKEMLELAEELLAE 99 (112)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988877654
No 31
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.96 E-value=1.3e-09 Score=99.19 Aligned_cols=95 Identities=27% Similarity=0.359 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhC--CCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHH
Q 047726 1075 MKQCRIVLRQAAAA--DDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREF 1152 (1297)
Q Consensus 1075 mKRCr~VLr~l~ss--~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreV 1152 (1297)
...|..++..+... +.+.+|..++.. ...++|..+|++||||++|..|+..|.|. +...|.+|++++
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~----------~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~-s~~~f~~D~~li 70 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDP----------KEAPDYYEVIKNPMDLSTIKKKLKNGEYK-SLEEFEADVRLI 70 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCCh----------hcCCCHHHHHhCcccHHHHHHHHhcCCCC-CHHHHHHHHHHH
Confidence 46789999999888 888888888654 45889999999999999999999999998 888899999999
Q ss_pred HhhhhhccCCCchHHHHHHHhhhhhhhh
Q 047726 1153 WNNVRTAFGDQPDFVDLAEKLSRNFESL 1180 (1297)
Q Consensus 1153 WsN~~Tyn~dg~dVv~LAEsLSq~FESr 1180 (1297)
|+|+..||+.++.++.+|..|...|+..
T Consensus 71 ~~Na~~~n~~~~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 71 FSNAKTYNGPGSPIYKDAKKLEKLFEKL 98 (99)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999888765
No 32
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.96 E-value=2e-09 Score=107.62 Aligned_cols=103 Identities=19% Similarity=0.146 Sum_probs=89.9
Q ss_pred cchHHHHHHHHHHHHHHH---hCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhH
Q 047726 1069 SISSIIMKQCRIVLRQAA---AADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSF 1145 (1297)
Q Consensus 1069 s~SdlimKRCr~VLr~l~---ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~F 1145 (1297)
...+...++|-.+++.++ ..+.+.+|..|++. .. +.++|..+|++||||+||..|+..+.|. +...|
T Consensus 20 ~~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~--------~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~-s~~~f 89 (128)
T cd05529 20 HIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDL--------RA-WYPDYWNRVPVPMDLETIRSRLENRYYR-SLEAL 89 (128)
T ss_pred CCCHHHHHHHHHHHHHHHhcccCcccccccCCCCc--------cc-cCCcHHHHcCCCCCHHHHHHHHhcCCCC-CHHHH
Confidence 344667788888889998 77888888888754 21 6899999999999999999999999998 78889
Q ss_pred HHHHHHHHhhhhhccCCCchHHHHHHHhhhhhhhhh
Q 047726 1146 LQDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLY 1181 (1297)
Q Consensus 1146 aEDVreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrY 1181 (1297)
..|++++|.||.+||+.++.++.+|..|.+.|+++.
T Consensus 90 ~~Dv~Li~~Na~~yN~~~s~i~~~A~~l~~~~~~~l 125 (128)
T cd05529 90 RHDVRLILSNAETFNEPNSEIAKKAKRLSDWLLRIL 125 (128)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998887764
No 33
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.95 E-value=2e-10 Score=125.49 Aligned_cols=58 Identities=43% Similarity=1.139 Sum_probs=51.2
Q ss_pred CCCCCcccc---cccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1219 IPKAPWDEG---ICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1219 lprapw~~~---~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
+.++.|++. .|.+||...+.+++|+||.||++||||||.|||.+.|+|.|.|..|...
T Consensus 271 vk~yrwqcieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 271 VKTYRWQCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEE 331 (336)
T ss_pred HHhheeeeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHH
Confidence 456678765 5678898889999999999999999999999999999999999999643
No 34
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=98.94 E-value=1.3e-09 Score=99.02 Aligned_cols=84 Identities=25% Similarity=0.384 Sum_probs=75.5
Q ss_pred HHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhhhh
Q 047726 1078 CRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVR 1157 (1297)
Q Consensus 1078 Cr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN~~ 1157 (1297)
|+.|+..++.++.++.|..++.. ...++|..+|++||||.+|..|+.+|.|. +...|..||+++|+|+.
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~----------~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~-s~~~f~~Dv~~i~~Na~ 69 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDP----------KEYPDYYEIIKNPMDLSTIRKKLENGKYK-SIEEFEADVRLIFQNAR 69 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHT----------TTSTTHHHHSSSS--HHHHHHHHHTTSSS-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCCh----------hhCCCHHHHHhhccchhhhhHHhhccchh-hHHHHHHHHHHHHHHHH
Confidence 99999999999999999999633 45899999999999999999999999999 88999999999999999
Q ss_pred hccCCCchHHHHHHH
Q 047726 1158 TAFGDQPDFVDLAEK 1172 (1297)
Q Consensus 1158 Tyn~dg~dVv~LAEs 1172 (1297)
.||+.++.++.+|++
T Consensus 70 ~yn~~~s~~~~~A~~ 84 (84)
T PF00439_consen 70 RYNPPDSPIYKAAEK 84 (84)
T ss_dssp HHSCTTSHHHHHHHH
T ss_pred HHCCCcCHHHHHhcC
Confidence 999999999888763
No 35
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.92 E-value=2.4e-09 Score=103.59 Aligned_cols=100 Identities=12% Similarity=0.192 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhh
Q 047726 1076 KQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNN 1155 (1297)
Q Consensus 1076 KRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN 1155 (1297)
||+..|++.+..... .--+++...|+.. +...++|+|..+|++||||+||..++..+.|. +...|..|++++|.|
T Consensus 3 ~~~~~l~~~v~~~~d--~~gr~~~~~F~~~--p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~-s~~ef~~D~~li~~N 77 (103)
T cd05518 3 KRMLALFLYVLEYRE--GSGRRLCDLFMEK--PSKKDYPDYYKIILEPIDLKTIEHNIRNDKYA-TEEELMDDFKLMFRN 77 (103)
T ss_pred HHHHHHHHHHHHhhc--cCCCcccHHHhcC--CCcccCccHHHHcCCCcCHHHHHHHHCCCCCC-CHHHHHHHHHHHHHH
Confidence 677777777764321 1122223334433 34567999999999999999999999999999 888999999999999
Q ss_pred hhhccCCCchHHHHHHHhhhhhhhh
Q 047726 1156 VRTAFGDQPDFVDLAEKLSRNFESL 1180 (1297)
Q Consensus 1156 ~~Tyn~dg~dVv~LAEsLSq~FESr 1180 (1297)
|..||..++.++..|..|.+.|+.+
T Consensus 78 a~~yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 78 ARHYNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998887653
No 36
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.90 E-value=3.5e-09 Score=102.37 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhh
Q 047726 1076 KQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNN 1155 (1297)
Q Consensus 1076 KRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN 1155 (1297)
+.|+.++..++..... -.+++..+|+..+ ...+.|+|..+|++||||+||..|+..+.|. +...|..|++++|.|
T Consensus 3 ~~~~~l~~~i~~~~d~--~gr~~~~~F~~lp--~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~lm~~N 77 (103)
T cd05517 3 QILEQLLEAVMTATDP--SGRLISELFQKLP--SKVLYPDYYAVIKEPIDLKTIAQRIQSGYYK-SIEDMEKDLDLMVKN 77 (103)
T ss_pred HHHHHHHHHHHHhhCc--CCCChhHHHhcCC--CCCCCCCHHHHcCCCcCHHHHHHHHCcCCCC-CHHHHHHHHHHHHHH
Confidence 5688889888866553 2444444455443 4457899999999999999999999999998 888899999999999
Q ss_pred hhhccCCCchHHHHHHHhhhhhhh
Q 047726 1156 VRTAFGDQPDFVDLAEKLSRNFES 1179 (1297)
Q Consensus 1156 ~~Tyn~dg~dVv~LAEsLSq~FES 1179 (1297)
+.+||..++.++..|..|.+.|+.
T Consensus 78 a~~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 78 AKTFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999888764
No 37
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.85 E-value=4.1e-09 Score=101.89 Aligned_cols=82 Identities=17% Similarity=0.270 Sum_probs=70.9
Q ss_pred hccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhhhhhccCCCchHHHHHHHhhh
Q 047726 1096 NLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTAFGDQPDFVDLAEKLSR 1175 (1297)
Q Consensus 1096 ~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN~~Tyn~dg~dVv~LAEsLSq 1175 (1297)
+++-.+|+.+++ ....|+|..+|++||||+||..++..|.|. +...|..|++++|.|+.+||+.++.++..|..|.+
T Consensus 21 ~~~s~pF~~~p~--~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~ 97 (103)
T cd05520 21 QLLAEPFLKLPS--KRKYPDYYQEIKNPISLQQIRTKLKNGEYE-TLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQK 97 (103)
T ss_pred CCccHhhhcCCC--cccCCCHHHHcCCCcCHHHHHHHHccCCCC-CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 334444555443 356899999999999999999999999999 88889999999999999999999999999999999
Q ss_pred hhhhh
Q 047726 1176 NFESL 1180 (1297)
Q Consensus 1176 ~FESr 1180 (1297)
.|+.+
T Consensus 98 ~f~~~ 102 (103)
T cd05520 98 LMQAK 102 (103)
T ss_pred HHHHh
Confidence 88764
No 38
>smart00541 FYRN "FY-rich" domain, N-terminal region. is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=98.76 E-value=6.2e-09 Score=87.33 Aligned_cols=35 Identities=29% Similarity=0.637 Sum_probs=29.3
Q ss_pred CCCCCCCCCceecCCeEE---EeEcCCCC--eEEEEEEee
Q 047726 383 GRPSYHNVNVIYPVGYTS---CWHDKITG--SLFICEVLD 417 (1297)
Q Consensus 383 ~~p~FHse~~IyPVGY~s---~~~~~~~~--~~y~C~IlD 417 (1297)
.+++|||+++|||+||+| ||+.++++ |.|+|.|.|
T Consensus 5 ~~~~fh~~~~IyP~Gy~s~R~y~S~~dp~~~c~Y~c~i~~ 44 (44)
T smart00541 5 QGKLFHSEDAIFPVGYKSTRKYWSVKDPNRRCNYSCVIDE 44 (44)
T ss_pred cCCCcccCCEEecCCEEEEEEEecccCCCCEEEEEEEECC
Confidence 349999999999999999 66655555 999999864
No 39
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.75 E-value=1.6e-08 Score=98.50 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHH
Q 047726 1074 IMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFW 1153 (1297)
Q Consensus 1074 imKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVW 1153 (1297)
+.+||+.++..+....... ..++...|+.. +...+.++|..+|++||||+||..++.. |. +...|..|+.++|
T Consensus 2 l~~~~~~l~~~i~~~~~~~--g~~~~~~F~~l--p~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~-s~~ef~~D~~li~ 74 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEEN--GIEIHPIFNVL--PLRKDYPDYYKIIKNPLSLNTVKKRLPH--YT-NAQEFVNDLAQIP 74 (106)
T ss_pred HHHHHHHHHHHHHhhcCcC--CCCchHhhhcC--CccccCccHHHHhcCCCCHHHHHHHHHc--CC-CHHHHHHHHHHHH
Confidence 4688999999998655543 23333444433 3556799999999999999999999997 88 8888999999999
Q ss_pred hhhhhccCCCchHHHHHHHhhhhhhhh
Q 047726 1154 NNVRTAFGDQPDFVDLAEKLSRNFESL 1180 (1297)
Q Consensus 1154 sN~~Tyn~dg~dVv~LAEsLSq~FESr 1180 (1297)
+|+..||..++.++..|..|.+.|+++
T Consensus 75 ~Na~~yN~~~s~i~~~A~~le~~~~~~ 101 (106)
T cd05521 75 WNARLYNTKGSVIYKYALILEKYINDV 101 (106)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999998887765
No 40
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.72 E-value=2.3e-08 Score=96.72 Aligned_cols=81 Identities=20% Similarity=0.193 Sum_probs=69.7
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhhhhhccCCCchHHHHHHHhhhh
Q 047726 1097 LLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTAFGDQPDFVDLAEKLSRN 1176 (1297)
Q Consensus 1097 pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN~~Tyn~dg~dVv~LAEsLSq~ 1176 (1297)
++..+|+++++ ....++|..+|++||||++|..++..+.|. +...|..|++++|.|+..||+.++.++.+|..|.+.
T Consensus 23 ~l~~~F~~~p~--~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~-s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~ 99 (104)
T cd05522 23 LLTLHFEKLPD--KAREPEYYQEISNPISLDDIKKKVKRRKYK-SFDQFLNDLNLMFENAKLYNENDSQEYKDAVLLEKE 99 (104)
T ss_pred cccHHHhcCCC--ccccCcHHHHhCCCcCHHHHHHHHccCCCC-CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 33344444443 346899999999999999999999999998 778899999999999999999999999999999998
Q ss_pred hhhh
Q 047726 1177 FESL 1180 (1297)
Q Consensus 1177 FESr 1180 (1297)
|+.+
T Consensus 100 f~~l 103 (104)
T cd05522 100 ARLL 103 (104)
T ss_pred HHHh
Confidence 8763
No 41
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.71 E-value=5.1e-09 Score=125.84 Aligned_cols=50 Identities=42% Similarity=1.125 Sum_probs=46.8
Q ss_pred ccccccccCCCCCCeEEecCCCCC-CcccccCCCCCCCCCCCccCccCCcc
Q 047726 1227 GICKVCGVDKDDDSVLLCDTCDAE-YHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1227 ~~CkVCg~~~d~~~LLLCD~CD~a-YHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
..|.+|...+.++.||+||.|+.+ ||+|||+|+|.++|-++|||++|.-.
T Consensus 216 ~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 216 VKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred ccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence 469999998889999999999999 99999999999999999999999654
No 42
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.69 E-value=2.5e-08 Score=97.86 Aligned_cols=82 Identities=16% Similarity=0.192 Sum_probs=70.4
Q ss_pred CCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhhhhhccCCCchHHH
Q 047726 1089 DDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTAFGDQPDFVD 1168 (1297)
Q Consensus 1089 ~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN~~Tyn~dg~dVv~ 1168 (1297)
+.+.+|.+++.. +++...++++|..+|++||||+||+.++..|.|. +.++|..|++++|+|+..||+.++.+..
T Consensus 17 p~~~~~~~~v~~-----~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~Dv~LI~~N~~~yNg~~s~~~~ 90 (109)
T cd05492 17 PPDTTNRAIVLN-----KRGKATKLPKRRRLIHTHLDVADIQEKINSEKYT-SLEEFKADALLLLHNTAIFHGADSEQYD 90 (109)
T ss_pred cccccccccccc-----cCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 455667666543 3345567999999999999999999999999999 7899999999999999999999999999
Q ss_pred HHHHhhhh
Q 047726 1169 LAEKLSRN 1176 (1297)
Q Consensus 1169 LAEsLSq~ 1176 (1297)
+|..|-+.
T Consensus 91 ~A~~l~~d 98 (109)
T cd05492 91 AARWLYRD 98 (109)
T ss_pred HHHHHHHH
Confidence 99887664
No 43
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=98.64 E-value=1.2e-08 Score=93.90 Aligned_cols=54 Identities=30% Similarity=0.385 Sum_probs=46.2
Q ss_pred HHHHHhccccCCCeEEEEeeccCc---ceeEEEEECCCCCcccchhhhhhhhccccc
Q 047726 223 EFISERHGVLEEGWSVELRHSTNS---YELYAVYCAPDGRTFDSMSEVACYLGLTSS 276 (1297)
Q Consensus 223 ~fi~~~~g~le~gwrve~k~~~~~---~~~~~~y~~pdg~~f~s~~e~a~~lgl~~~ 276 (1297)
+.+++.+.+|.+||++|+++|-+| ...++||.+|.|++|+|+.||++||+.+.+
T Consensus 2 ~~~~~~~~~Lp~GW~re~~~R~~g~~~~~~dv~Y~sP~Gk~~RS~~eV~~yL~~~~~ 58 (77)
T PF01429_consen 2 HRISPLDPPLPDGWKREVVVRKSGSSAGKKDVYYYSPCGKRFRSKKEVVRYLKENPS 58 (77)
T ss_dssp -SSECEBTTSTTT-EEEEEESSSSTTTTSEEEEEEETTSEEESSHHHHHHHHTTSS-
T ss_pred CccccccCCCCCCCEEEEEEecCCCcCCceEEEEECCCCCEEeCHHHHHHHHHhCCC
Confidence 345677889999999999999877 468899999999999999999999999875
No 44
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.61 E-value=1.1e-08 Score=121.98 Aligned_cols=52 Identities=29% Similarity=0.765 Sum_probs=43.8
Q ss_pred ccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.+||+.|++++.- -+++|||+||++||+.|+. ||+ .|...|.|.|||++|.-
T Consensus 253 ~~fCsaCn~~~~F-~~~i~CD~Cp~sFH~~CLe------PPl--~~eniP~g~W~C~ec~~ 304 (613)
T KOG4299|consen 253 EDFCSACNGSGLF-NDIICCDGCPRSFHQTCLE------PPL--EPENIPPGSWFCPECKI 304 (613)
T ss_pred HHHHHHhCCcccc-ccceeecCCchHHHHhhcC------CCC--CcccCCCCccccCCCee
Confidence 4699999995544 2669999999999999999 775 34669999999999974
No 45
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.50 E-value=4.5e-08 Score=107.55 Aligned_cols=50 Identities=26% Similarity=0.835 Sum_probs=46.6
Q ss_pred ccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
=.+|.+||.++... +||+||-|+|+||++||. ||+.+ +|+|.|.|..|..
T Consensus 281 ck~csicgtsendd-qllfcddcdrgyhmycls------ppm~e----ppegswsc~KOG~ 330 (336)
T KOG1244|consen 281 CKYCSICGTSENDD-QLLFCDDCDRGYHMYCLS------PPMVE----PPEGSWSCHLCLE 330 (336)
T ss_pred cceeccccCcCCCc-eeEeecccCCceeeEecC------CCcCC----CCCCchhHHHHHH
Confidence 47899999998876 999999999999999999 99988 9999999999975
No 46
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.45 E-value=4.3e-08 Score=82.48 Aligned_cols=48 Identities=46% Similarity=1.217 Sum_probs=43.2
Q ss_pred cccccccCCCCCCeEEecCCCCCCcccccCCCCC--CCCCCCccCccCCc
Q 047726 1228 ICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLV--RIPEGNWYCPSCVV 1275 (1297)
Q Consensus 1228 ~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~--~IPeGdWyCP~C~~ 1275 (1297)
+|.+|++..+.+.||.||.|++.||+.|+.|++. .++.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4899999888999999999999999999999987 56667999999964
No 47
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.39 E-value=1.1e-07 Score=79.98 Aligned_cols=50 Identities=32% Similarity=0.922 Sum_probs=39.1
Q ss_pred ccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 31 LCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 31 ~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+|.+|+. ....+++|.||.|.+.||..|++ |+... ...+.+.|+|+.|..
T Consensus 1 ~C~vC~~-~~~~~~~i~C~~C~~~~H~~C~~------~~~~~--~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ-SDDDGDMIQCDSCNRWYHQECVG------PPEKA--EEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS-SCTTSSEEEBSTTSCEEETTTST------SSHSH--HSHHSSSBSSHHHHH
T ss_pred eCcCCCC-cCCCCCeEEcCCCChhhCcccCC------CChhh--ccCCCCcEECcCCcC
Confidence 5999999 44466999999999999999999 44432 123445999999974
No 48
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.34 E-value=1.5e-07 Score=112.61 Aligned_cols=55 Identities=36% Similarity=1.014 Sum_probs=47.9
Q ss_pred cccccccccCCCCCCeEEecCCCCCCcccccCCCC--CCCCCCCccCccCCcccccc
Q 047726 1226 EGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPL--VRIPEGNWYCPSCVVRNSMV 1280 (1297)
Q Consensus 1226 ~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL--~~IPeGdWyCP~C~~~~~~~ 1280 (1297)
.++|..|++...-..+++||+|++.||++||.||| +.+|.|.|||++|..+....
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~in 309 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSVIN 309 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeeeecc
Confidence 45899999776666779999999999999999995 68999999999998876554
No 49
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=98.32 E-value=3.8e-07 Score=118.96 Aligned_cols=94 Identities=21% Similarity=0.350 Sum_probs=86.0
Q ss_pred HHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhhhh
Q 047726 1078 CRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVR 1157 (1297)
Q Consensus 1078 Cr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN~~ 1157 (1297)
|..||..++.++.+++|..||...+ ++||.+||++||||.||.-++..|.|. ++..|+.|++++|.||.
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~----------vp~Y~~IIk~Pmdl~tir~k~~~~~Y~-~~eef~~Di~lvf~Nc~ 1374 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKE----------VPDYYDIIKKPMDLSTIREKLSKGIYP-SPEEFATDIELVFDNCE 1374 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhh----------cccHHHHhcChhHHHHHHHHHhcccCC-CHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988733 789999999999999999999999999 88999999999999999
Q ss_pred hccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1158 TAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1158 Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
+||.+ ++|......|.+-|+.+|..
T Consensus 1375 ~yN~~-s~i~~ag~~l~~ff~~~~~~ 1399 (1404)
T KOG1245|consen 1375 TYNED-SEIGRAGTCLRRFFHKRWRK 1399 (1404)
T ss_pred Hhccc-hhhhhhcchHHHHHHHHHHh
Confidence 99999 88888888888888875543
No 50
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=98.10 E-value=3.3e-06 Score=75.11 Aligned_cols=45 Identities=33% Similarity=0.429 Sum_probs=40.5
Q ss_pred ccCCCeEEEEeeccCc--ceeEEEEECCCCCcccchhhhhhhhcccc
Q 047726 231 VLEEGWSVELRHSTNS--YELYAVYCAPDGRTFDSMSEVACYLGLTS 275 (1297)
Q Consensus 231 ~le~gwrve~k~~~~~--~~~~~~y~~pdg~~f~s~~e~a~~lgl~~ 275 (1297)
+|..||+.|++++-+| ....+||.+|.|++|+|+.||++||.-+.
T Consensus 5 P~p~GW~R~~~~r~~g~~~k~dv~Y~sP~Gk~~Rs~~ev~~yL~~~~ 51 (62)
T cd00122 5 PLPPGWKRELVIRKSGSAGKGDVYYYSPCGKKLRSKPEVARYLEKTG 51 (62)
T ss_pred CCCCCeEEEEEEcCCCCCCcceEEEECCCCceecCHHHHHHHHHhCC
Confidence 6789999999999776 45779999999999999999999999875
No 53
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=98.08 E-value=3.6e-06 Score=78.36 Aligned_cols=45 Identities=31% Similarity=0.502 Sum_probs=40.4
Q ss_pred ccCCCeEEEEeeccCc--ceeEEEEECCCCCcccchhhhhhhhcccc
Q 047726 231 VLEEGWSVELRHSTNS--YELYAVYCAPDGRTFDSMSEVACYLGLTS 275 (1297)
Q Consensus 231 ~le~gwrve~k~~~~~--~~~~~~y~~pdg~~f~s~~e~a~~lgl~~ 275 (1297)
.|..||++|+++|-+| ...++||.+|.|++|+|+.||++||+-.+
T Consensus 6 ~lp~GW~r~~~~R~~gs~~k~DvyY~sP~Gkk~RS~~ev~~yL~~~~ 52 (77)
T cd01396 6 RLPPGWKRELVPRKSGSAGKFDVYYISPTGKKFRSKVELARYLEKNG 52 (77)
T ss_pred CCCCCCEEEEEEecCCCCCcceEEEECCCCCEEECHHHHHHHHHhCC
Confidence 3889999999999886 35779999999999999999999998764
No 54
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.03 E-value=1.7e-06 Score=95.88 Aligned_cols=44 Identities=34% Similarity=0.761 Sum_probs=40.2
Q ss_pred ccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCA 85 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp 85 (1297)
=..|.+|++|+.+. +++.||-|+||||..|++ +.. .|.|.|+|-
T Consensus 314 C~lC~IC~~P~~E~-E~~FCD~CDRG~HT~CVG--------L~~----lP~G~WICD 357 (381)
T KOG1512|consen 314 CELCRICLGPVIES-EHLFCDVCDRGPHTLCVG--------LQD----LPRGEWICD 357 (381)
T ss_pred cHhhhccCCcccch-heeccccccCCCCccccc--------ccc----ccCccchhh
Confidence 36799999999987 999999999999999999 655 888999998
No 55
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.02 E-value=1.6e-06 Score=96.01 Aligned_cols=55 Identities=31% Similarity=0.795 Sum_probs=46.5
Q ss_pred CCCCcccc---cccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCc-cCCcc
Q 047726 1220 PKAPWDEG---ICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCP-SCVVR 1276 (1297)
Q Consensus 1220 prapw~~~---~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP-~C~~~ 1276 (1297)
..++|.+- .|.+|++...++++++||.||++||++|.. |..+|.|.|.|. .|...
T Consensus 305 KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WICD~~C~~~ 363 (381)
T KOG1512|consen 305 KTYFWKCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWICDMRCREA 363 (381)
T ss_pred hhcchhhcccHhhhccCCcccchheeccccccCCCCccccc--cccccCccchhhhHHHHh
Confidence 44677654 577888888899999999999999999999 999999999998 46444
No 56
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.96 E-value=4.1e-06 Score=93.56 Aligned_cols=54 Identities=22% Similarity=0.624 Sum_probs=41.6
Q ss_pred CCCCcccccccccccccccCCCCEEecCC--CC-CcccccccccccccCCcccCCCCCCCCCCccccccccC
Q 047726 22 STSSSETTSLCGACGVAAEAEGDVVVCDA--CE-RGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKN 90 (1297)
Q Consensus 22 sss~~e~d~~C~vCg~~e~~~GdLlcCD~--C~-R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~ 90 (1297)
.+....+..+|.-+ ....|+++-||. |+ .+||+.|++ +.. .|.|.||||.|...
T Consensus 212 ~~~d~~e~~yC~Cn---qvsyg~Mi~CDn~~C~~eWFH~~CVG--------L~~----~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 212 EAVDPDEPTYCICN---QVSYGKMIGCDNPGCPIEWFHFTCVG--------LKT----KPKGKWYCPRCKAE 268 (274)
T ss_pred cccCCCCCEEEEec---ccccccccccCCCCCCcceEEEeccc--------ccc----CCCCcccchhhhhh
Confidence 33334445677554 345889999998 99 999999999 444 78899999999863
No 57
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.93 E-value=1.3e-05 Score=92.64 Aligned_cols=113 Identities=18% Similarity=0.251 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHH
Q 047726 1073 IIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREF 1152 (1297)
Q Consensus 1073 limKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreV 1152 (1297)
.+-++|..++..+... .....+.+...|+.. +...-.|+|+.+|+.||||++|.+++..+.|. +...|..|+.++
T Consensus 142 ~~~~~~~~i~~~~~~~--~~~~~~~~s~~F~~~--p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~-s~eef~~D~~lM 216 (371)
T COG5076 142 LLYADNKAIAKFKKQL--FLRDGRFLSSIFLGL--PSKREYPDYYEIIKSPMDLLTIQKKLKNGRYK-SFEEFVSDLNLM 216 (371)
T ss_pred hHHHHHHHHHHHHHHh--hcccccccccccccC--CccccCCChheeecchhhHHHHHHHHHhhhhh-hHHHHHHHHHHH
Confidence 3667777777666422 222333444444443 34556899999999999999999999999999 889999999999
Q ss_pred HhhhhhccCCCchHHHHHHHhhhhhhhhhhhhhHhHhh
Q 047726 1153 WNNVRTAFGDQPDFVDLAEKLSRNFESLYENEIVTLLQ 1190 (1297)
Q Consensus 1153 WsN~~Tyn~dg~dVv~LAEsLSq~FESrYekqvL~l~q 1190 (1297)
|+||.+||+.+..|...|..|...|+..++.+.....+
T Consensus 217 ~~N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~~~ 254 (371)
T COG5076 217 FDNCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEEMLE 254 (371)
T ss_pred HHhhhhccCCCcchhhhhHHHHHHHHHHHHhccccchh
Confidence 99999999999999999999999999999876665443
No 58
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.90 E-value=7.4e-06 Score=100.85 Aligned_cols=66 Identities=26% Similarity=0.638 Sum_probs=56.0
Q ss_pred ccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccccCCcccccCCCc--ccceec
Q 047726 29 TSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKNGAKSKLWPLG--RKKRIL 106 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~g~k~k~~PLg--~~~~ll 106 (1297)
...|.+|+. +|++||||.|+.+||..|++ ||+.. .|.++|.|+.|.. |.+ -+.+||
T Consensus 47 ~e~c~ic~~----~g~~l~c~tC~~s~h~~cl~------~pl~~----~p~~~~~c~Rc~~--------p~~~~k~~~il 104 (696)
T KOG0383|consen 47 QEACRICAD----GGELLWCDTCPASFHASCLG------PPLTP----QPNGEFICPRCFC--------PKNAGKIEKIL 104 (696)
T ss_pred hhhhhhhcC----CCcEEEeccccHHHHHHccC------CCCCc----CCccceeeeeecc--------CCCcccccccc
Confidence 578999999 99999999999999999999 88877 6777899999964 444 446678
Q ss_pred cccCCCCCCC
Q 047726 107 DMNASPPSDV 116 (1297)
Q Consensus 107 din~~pp~~~ 116 (1297)
..+.+|..+.
T Consensus 105 ~~~~~~~~~~ 114 (696)
T KOG0383|consen 105 GWRWKPTPKP 114 (696)
T ss_pred eeEecCCCCc
Confidence 8888887766
No 59
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.86 E-value=5e-06 Score=101.03 Aligned_cols=51 Identities=24% Similarity=0.737 Sum_probs=46.1
Q ss_pred cccccccccccccCCCCEEecCCCCCc-ccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 28 TTSLCGACGVAAEAEGDVVVCDACERG-FHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdLlcCD~C~R~-FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
...-|.+|+.++.++ -||+||.|+.+ ||.+||+ |++-. +|-++|||+.|..
T Consensus 214 E~~~C~IC~~~DpEd-VLLLCDsCN~~~YH~YCLD------Pdl~e----iP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPED-VLLLCDSCNKVYYHVYCLD------PDLSE----SPVNEWYCTNCSL 265 (1134)
T ss_pred ccccceeeccCChHH-hheeecccccceeeccccC------ccccc----ccccceecCcchh
Confidence 357899999988876 99999999999 9999999 88866 8899999999985
No 60
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.85 E-value=2.6e-06 Score=111.34 Aligned_cols=53 Identities=43% Similarity=1.140 Sum_probs=49.7
Q ss_pred cccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1226 EGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1226 ~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
...|++|.+..+...|++||.|..+||++|+.|.|..+|.|+|+||.|+....
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 35799999999999999999999999999999999999999999999988764
No 61
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=97.81 E-value=1.9e-05 Score=73.55 Aligned_cols=48 Identities=27% Similarity=0.403 Sum_probs=41.6
Q ss_pred ccccCCCeEEEEeeccCc---ceeEEEEECCCCCcccchhhhhhhhccccc
Q 047726 229 HGVLEEGWSVELRHSTNS---YELYAVYCAPDGRTFDSMSEVACYLGLTSS 276 (1297)
Q Consensus 229 ~g~le~gwrve~k~~~~~---~~~~~~y~~pdg~~f~s~~e~a~~lgl~~~ 276 (1297)
+-+|..||+-++.+|-.| ....+||.+|.|++|+|+.||++||+-+..
T Consensus 5 ~~Plp~GW~R~~~~r~~g~~~~~~dV~Y~sP~GkklRs~~ev~~YL~~~~~ 55 (77)
T smart00391 5 RLPLPCGWRRETKQRKSGRSAGKFDVYYISPCGKKLRSKSELARYLHKNGD 55 (77)
T ss_pred cCCCCCCcEEEEEEecCCCCCCcccEEEECCCCCeeeCHHHHHHHHHhCCC
Confidence 346899999999998665 357789999999999999999999997764
No 62
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.77 E-value=1.1e-05 Score=97.54 Aligned_cols=50 Identities=40% Similarity=1.101 Sum_probs=45.6
Q ss_pred cccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCc
Q 047726 1226 EGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVV 1275 (1297)
Q Consensus 1226 ~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~ 1275 (1297)
+-.|..|+..+|+.+.++|+.||-.||.||..|+++.||.|.|+|+.|..
T Consensus 68 crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 68 CRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTR 117 (694)
T ss_pred ceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHh
Confidence 44678888888999999999999999999999999999999999999843
No 63
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=97.72 E-value=9.1e-05 Score=73.41 Aligned_cols=103 Identities=15% Similarity=0.185 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHH
Q 047726 1074 IMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFW 1153 (1297)
Q Consensus 1074 imKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVW 1153 (1297)
+.+.-..++..++.+.+.. -++..-+|+..+... +.|..++++||||.+|..++..|.|. +.+.|.+|+.++|
T Consensus 4 vq~~l~~l~~~V~~~~D~~--Gr~~s~~f~~LP~~~----~~~~~~ik~Pi~l~~Ik~ki~~~~Y~-~ld~~~~D~~lmf 76 (110)
T cd05526 4 VQELLATLFVSVMNHQDEE--GRCYSDSLAELPELA----VDGVGPKKIPLTLDIIKRNVDKGRYR-RLDKFQEDMFEVL 76 (110)
T ss_pred HHHHHHHHHHHHHhccCCC--CCCchHHHHHCCCcc----cCchhhhcCCccHHHHHHHHHcCCcC-cHHHHHHHHHHHH
Confidence 4445556667776555322 122223333322211 23346899999999999999999999 8889999999999
Q ss_pred hhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1154 NNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1154 sN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
+|+++||..++.++..|..|.+.|...+.+
T Consensus 77 ~NAr~yN~~~S~iy~dA~eLq~~f~~~rd~ 106 (110)
T cd05526 77 ERARRLSRTDSEIYEDAVELQQFFIKIRDE 106 (110)
T ss_pred HHHHHhCcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988877654
No 64
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.51 E-value=4.7e-05 Score=85.26 Aligned_cols=48 Identities=33% Similarity=0.942 Sum_probs=40.6
Q ss_pred ccccccccCCCCCCeEEecC--CC-CCCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1227 GICKVCGVDKDDDSVLLCDT--CD-AEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1227 ~~CkVCg~~~d~~~LLLCD~--CD-~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
.+| +|. ....++|+-||. |+ ..||+.|.. |..-|.|.||||.|.....
T Consensus 220 ~yC-~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~~~ 270 (274)
T KOG1973|consen 220 TYC-ICN-QVSYGKMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAENK 270 (274)
T ss_pred EEE-Eec-ccccccccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhhhh
Confidence 467 444 457899999997 99 889999999 8999999999999987644
No 65
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.47 E-value=4.5e-05 Score=84.13 Aligned_cols=46 Identities=39% Similarity=0.907 Sum_probs=38.1
Q ss_pred ccccccccccccCCCCEEecCC--CCC-cccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDA--CER-GFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~--C~R-~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
..+|. |.. ..-|++|-||+ |.| +||+.|++ +.. +|+|.|||++|..
T Consensus 221 ~lYCf-Cqq--vSyGqMVaCDn~nCkrEWFH~~CVG--------Lk~----pPKG~WYC~eCk~ 269 (271)
T COG5034 221 ELYCF-CQQ--VSYGQMVACDNANCKREWFHLECVG--------LKE----PPKGKWYCPECKK 269 (271)
T ss_pred eeEEE-ecc--cccccceecCCCCCchhheeccccc--------cCC----CCCCcEeCHHhHh
Confidence 46664 655 45679999996 998 89999999 666 8999999999974
No 66
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.39 E-value=5.6e-05 Score=88.94 Aligned_cols=46 Identities=43% Similarity=1.101 Sum_probs=43.4
Q ss_pred cccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCC----ccCccC
Q 047726 1228 ICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGN----WYCPSC 1273 (1297)
Q Consensus 1228 ~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGd----WyCP~C 1273 (1297)
.|-+|.+..+...++.||+|..-||+-||.|||+.+|.-. |.|.+|
T Consensus 546 sCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 546 SCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC 595 (707)
T ss_pred eeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccc
Confidence 5999999999999999999999999999999999999864 999999
No 67
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.
Probab=97.30 E-value=0.0002 Score=63.75 Aligned_cols=42 Identities=38% Similarity=0.639 Sum_probs=38.0
Q ss_pred CccchHHHHHHHHHHhHHhhcCCCCCCHHHHHHhhcCcCcccc
Q 047726 701 QIVGDFFQVCQFLWRFHEVLGLKESFSLEELEEELINPWIDGC 743 (1297)
Q Consensus 701 ~lvGD~~q~~e~l~rf~~~~g~~~~~~~e~le~~l~~p~~d~~ 743 (1297)
+.+||+++|||||..|+++|+|+. +|++++|+.|.+...+.+
T Consensus 2 ~~~~~~L~v~~Fl~~F~~~L~L~~-ftlddf~~AL~~~~~~~l 43 (61)
T PF02791_consen 2 EAFGDLLMVWEFLNTFGEVLGLSP-FTLDDFEQALLCNDPSGL 43 (61)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCc-CCHHHHHHHHcCCCcchh
Confidence 568999999999999999999998 799999999999776654
No 68
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.24 E-value=0.0001 Score=91.14 Aligned_cols=49 Identities=41% Similarity=1.095 Sum_probs=44.4
Q ss_pred ccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1227 GICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1227 ~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
..|.+|+ +.+.+|+||+|...||.+|+.||+..+|.++|.|+.|....+
T Consensus 48 e~c~ic~---~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 48 EACRICA---DGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKN 96 (696)
T ss_pred hhhhhhc---CCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCC
Confidence 4799998 889999999999999999999999999999999999955443
No 69
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.24 E-value=0.00015 Score=75.15 Aligned_cols=27 Identities=30% Similarity=0.705 Sum_probs=25.0
Q ss_pred cccccccccccccCCcccCCCCCCCCCCccccccccC
Q 047726 54 GFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKN 90 (1297)
Q Consensus 54 ~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~ 90 (1297)
|||+.||+ ||+.. +|+|+|+||.|...
T Consensus 1 g~H~~CL~------Ppl~~----~P~g~W~Cp~C~~~ 27 (148)
T cd04718 1 GFHLCCLR------PPLKE----VPEGDWICPFCEVE 27 (148)
T ss_pred CcccccCC------CCCCC----CCCCCcCCCCCcCC
Confidence 79999999 99988 99999999999863
No 70
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.02 E-value=0.00055 Score=67.99 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhccccc
Q 047726 1074 IMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAY 1138 (1297)
Q Consensus 1074 imKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY 1138 (1297)
.+..|..+|+.++.++.+++|..|| |+...++|+|+.+|++||||+||..++..+.+
T Consensus 4 ~~~~~l~~l~~~~~~~~~~pF~~PV--------d~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~ 60 (114)
T cd05494 4 ALERVLRELKRHRRNEDAWPFLEPV--------NPPRRGAPDYRDVIKRPMSFGTKVNNIVETGA 60 (114)
T ss_pred HHHHHHHHHHHhhhCCCCCCcCCCC--------CchhcCCCChhhhcCCCCChHHHHHHHHcccc
Confidence 4567778888887766766666665 45678899999999999999999999887644
No 71
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=96.98 E-value=0.00041 Score=88.96 Aligned_cols=51 Identities=27% Similarity=0.854 Sum_probs=43.5
Q ss_pred cccccccccCC--CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1226 EGICKVCGVDK--DDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1226 ~~~CkVCg~~~--d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
+.+|.||.... +...+++||.|+.++|++|.+ +.-+|+|.|+|..|...+.
T Consensus 219 D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~ 271 (1051)
T KOG0955|consen 219 DAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQ 271 (1051)
T ss_pred CccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcC
Confidence 45899997654 347899999999999999999 5689999999999987754
No 72
>smart00571 DDT domain in different transcription and chromosome remodeling factors.
Probab=96.85 E-value=0.0009 Score=60.14 Aligned_cols=36 Identities=39% Similarity=0.648 Sum_probs=33.6
Q ss_pred CccchHHHHHHHHHHhHHhhcCCCCCC--HHHHHHhhcC
Q 047726 701 QIVGDFFQVCQFLWRFHEVLGLKESFS--LEELEEELIN 737 (1297)
Q Consensus 701 ~lvGD~~q~~e~l~rf~~~~g~~~~~~--~e~le~~l~~ 737 (1297)
+.+||+++|||||..|.++|||++ ++ ++++++.|.+
T Consensus 2 ~~~~d~l~V~eFl~~F~~~L~L~~-f~~~l~~f~~Al~~ 39 (63)
T smart00571 2 EAFGDLLMVYEFLRSFGKVLGLSP-FRATLEDFIAALKC 39 (63)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCc-chhhHHHHHHHHhc
Confidence 578999999999999999999987 99 9999999987
No 73
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.73 E-value=0.00068 Score=80.63 Aligned_cols=68 Identities=21% Similarity=0.502 Sum_probs=50.7
Q ss_pred ccccccccccccCCC-CEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccccCCcccccCCCccc
Q 047726 29 TSLCGACGVAAEAEG-DVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKNGAKSKLWPLGRK 102 (1297)
Q Consensus 29 d~~C~vCg~~e~~~G-dLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~g~k~k~~PLg~~ 102 (1297)
+.-|.+|+-.....+ .||-||+|-..||..|+. |+....=+..+..+|||-.|..+-++..+.++--+
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chq------p~i~~~l~~D~~~~w~C~~C~~~~~~~~r~t~~~~ 236 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQ------PLIKDELAGDPFYEWFCDVCNRGPKKVPRLTLRWA 236 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhcc------CCCCHhhccCccceEeehhhccchhhccccccccc
Confidence 566999985443333 999999999999999999 55544334478899999999986555555555533
No 74
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity. The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.
Probab=96.71 E-value=0.0018 Score=60.41 Aligned_cols=43 Identities=33% Similarity=0.433 Sum_probs=36.9
Q ss_pred ccCCCeEEEEeeccCc--ceeEEEEECCCCCcccchhhhhhhhcc
Q 047726 231 VLEEGWSVELRHSTNS--YELYAVYCAPDGRTFDSMSEVACYLGL 273 (1297)
Q Consensus 231 ~le~gwrve~k~~~~~--~~~~~~y~~pdg~~f~s~~e~a~~lgl 273 (1297)
+|+-||+=|+..+-.+ ..-.|+|.||-|++|+|+.||++||+=
T Consensus 5 Pl~~GW~Re~vir~~~~~~~~dV~Y~aPcGKklRs~~ev~~yL~~ 49 (73)
T cd01397 5 PLELGWRRETRIRGLGGRIQGEVAYYAPCGKKLRQYPEVIKYLSK 49 (73)
T ss_pred CCCCCceeEEEeccCCCCccceEEEECCCCcccccHHHHHHHHHh
Confidence 7999999999877443 345689999999999999999999984
No 75
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.67 E-value=0.00071 Score=75.04 Aligned_cols=45 Identities=36% Similarity=0.989 Sum_probs=37.5
Q ss_pred cccccccCCCCCCeEEecC--CCCC-CcccccCCCCCCCCCCCccCccCCcc
Q 047726 1228 ICKVCGVDKDDDSVLLCDT--CDAE-YHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1228 ~CkVCg~~~d~~~LLLCD~--CD~a-YHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
+| -|+.. .-++|+-||. |.+. ||+.|.. |.+.|+|.|||+.|...
T Consensus 223 YC-fCqqv-SyGqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 223 YC-FCQQV-SYGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKKA 270 (271)
T ss_pred EE-Eeccc-ccccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHhc
Confidence 56 56643 4679999994 9985 9999999 99999999999999753
No 76
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=96.43 E-value=0.002 Score=80.02 Aligned_cols=85 Identities=22% Similarity=0.364 Sum_probs=69.2
Q ss_pred HHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhhhhhc
Q 047726 1080 IVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTA 1159 (1297)
Q Consensus 1080 ~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN~~Ty 1159 (1297)
.+|..+-.+...++|.+||.. .++++|..+|.+||||+|+..++..+.|. ....|.+|+..++.||+.|
T Consensus 613 ~il~~l~~h~~awPf~~Pv~~----------~e~pdyy~~I~~pmDl~tM~~~l~~~~y~-~~~~f~ad~~~vf~ncr~y 681 (720)
T KOG1472|consen 613 NILDQLQNHGDAWPFLKPVNK----------KEVPDYYDVIKHPMDLRTMQNRLKDNQYT-EVELFMADVVRVFANCRMY 681 (720)
T ss_pred hHHhhhhcCCccCCccCcccc----------ccCCcHHHHhcccccHHHHhhhccccchh-hHHHHHHHHHHHHhhhhcc
Confidence 567777788888888888766 45899999999999999999999999998 6677999999999999999
Q ss_pred cCCCchHHHHHHHhhh
Q 047726 1160 FGDQPDFVDLAEKLSR 1175 (1297)
Q Consensus 1160 n~dg~dVv~LAEsLSq 1175 (1297)
++....-...|..|..
T Consensus 682 n~~~~~y~k~~~~le~ 697 (720)
T KOG1472|consen 682 NGSDTQYYKCAQALEK 697 (720)
T ss_pred CCccchheecccchhh
Confidence 9865433333333333
No 77
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.40 E-value=0.0038 Score=62.95 Aligned_cols=41 Identities=27% Similarity=0.405 Sum_probs=38.0
Q ss_pred ccCCChhhhhhhhcccccCCCchhHHHHHHHHHhhhhhccCC
Q 047726 1121 SRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTAFGD 1162 (1297)
Q Consensus 1121 kRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN~~Tyn~d 1162 (1297)
--||||.||+.||.+|.|. .+..|.+|++.+|+||.+|+..
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~-tp~~F~~DiklI~~Nc~~ynd~ 102 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYA-TPKDFLKDIKRIVRDAKTIGDR 102 (119)
T ss_pred EeccCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHhCCH
Confidence 3679999999999999999 8999999999999999999864
No 78
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.38 E-value=0.0022 Score=76.18 Aligned_cols=54 Identities=26% Similarity=0.725 Sum_probs=46.0
Q ss_pred ccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
...|.+|.+...-. -|+.||.|...||+.||+ ||+.+.|...-.-.|.|.+|.+
T Consensus 544 ~ysCgiCkks~dQH-ll~~CDtC~lhYHlGCL~------PPLTR~Pkk~kn~gWqCsECdk 597 (707)
T KOG0957|consen 544 NYSCGICKKSTDQH-LLTQCDTCHLHYHLGCLS------PPLTRLPKKNKNFGWQCSECDK 597 (707)
T ss_pred ceeeeeeccchhhH-HHhhcchhhceeeccccC------CccccCcccccCcceeeccccc
Confidence 57899999955544 899999999999999999 9999977766677899999943
No 79
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=96.16 E-value=0.0037 Score=79.69 Aligned_cols=47 Identities=30% Similarity=0.646 Sum_probs=44.5
Q ss_pred ccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
++.|.+|.+ .|+++||..|+|.+|++|+. ||.-. +|..+|-|-.|..
T Consensus 344 ddhcrf~~d----~~~~lc~Et~prvvhlEcv~------hP~~~----~~s~~~e~evc~~ 390 (1414)
T KOG1473|consen 344 DDHCRFCHD----LGDLLCCETCPRVVHLECVF------HPRFA----VPSAFWECEVCNI 390 (1414)
T ss_pred cccccccCc----ccceeecccCCceEEeeecC------Ccccc----CCCccchhhhhhh
Confidence 899999999 99999999999999999999 88877 9999999999984
No 80
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.04 E-value=0.0025 Score=75.98 Aligned_cols=51 Identities=29% Similarity=0.711 Sum_probs=41.1
Q ss_pred cccccccC--CCCCCeEEecCCCCCCcccccCCCCCC----CCCCCccCccCCcccc
Q 047726 1228 ICKVCGVD--KDDDSVLLCDTCDAEYHTYCLEPPLVR----IPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1228 ~CkVCg~~--~d~~~LLLCD~CD~aYHl~CL~PPL~~----IPeGdWyCP~C~~~~~ 1278 (1297)
.|.||+.. ....+||.|+.|...||..|+.|+++. =|..+|||..|..+..
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~ 226 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPK 226 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchh
Confidence 58888644 345599999999999999999999864 3566899999976643
No 81
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=95.89 E-value=0.0035 Score=76.66 Aligned_cols=50 Identities=22% Similarity=0.763 Sum_probs=42.6
Q ss_pred ccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
--.|.+||.... .+.+++|+.|+-+||-+|.. |+... ++.+.|+|+.|..
T Consensus 68 crvCe~c~~~gD-~~kf~~Ck~cDvsyh~yc~~------P~~~~----v~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 68 CRVCEACGTTGD-PKKFLLCKRCDVSYHCYCQK------PPNDK----VPSGPWLCKKCTR 117 (694)
T ss_pred ceeeeeccccCC-cccccccccccccccccccC------Ccccc----ccCcccccHHHHh
Confidence 356888886333 34999999999999999999 88988 9999999999985
No 82
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=95.73 E-value=0.0044 Score=73.62 Aligned_cols=50 Identities=28% Similarity=0.884 Sum_probs=42.5
Q ss_pred cccccccccCC--CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCccc
Q 047726 1226 EGICKVCGVDK--DDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1226 ~~~CkVCg~~~--d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~ 1277 (1297)
++.|.+|...+ +...+++||+|+-.-|..|.. +..+|+|.|+|..|.-+.
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~~ 244 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYGE 244 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhcccc
Confidence 46799997654 346789999999999999999 669999999999997663
No 83
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=95.70 E-value=0.0044 Score=76.41 Aligned_cols=50 Identities=26% Similarity=0.688 Sum_probs=44.7
Q ss_pred cccccccccccccCCC-CEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 28 TTSLCGACGVAAEAEG-DVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~G-dLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+|..|.+|..++.+.+ +|++||.|.-.-|+.|.+ +.. +|+|.|.|..|..
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--------Ile----~p~gpWlCr~Cal 320 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--------ILE----VPEGPWLCRTCAL 320 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhc--------eee----cCCCCeeehhccc
Confidence 5899999999877766 999999999999999999 444 8889999999986
No 84
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=95.61 E-value=0.026 Score=69.95 Aligned_cols=49 Identities=31% Similarity=0.963 Sum_probs=43.1
Q ss_pred cccccccccCC--CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1226 EGICKVCGVDK--DDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1226 ~~~CkVCg~~~--d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
+-.|-||+..+ ...+|++||.|..--|+.|.. +.++|+|.|.|..|.-+
T Consensus 271 dviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 271 DVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCALG 321 (893)
T ss_pred cceeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhcccc
Confidence 34799998764 467899999999999999999 88999999999999765
No 85
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.22 E-value=0.0088 Score=73.38 Aligned_cols=63 Identities=24% Similarity=0.773 Sum_probs=47.1
Q ss_pred ccccccccCC--CCCCeEEec--CCCCCCcccccCCCCCCCCCCCccCccCCcccccccccccccccCCccC
Q 047726 1227 GICKVCGVDK--DDDSVLLCD--TCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNSMVQGASEHSQVGGQHK 1294 (1297)
Q Consensus 1227 ~~CkVCg~~~--d~~~LLLCD--~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~~~Q~~~e~~E~~~~~~ 1294 (1297)
+-|.||-..+ .+..++.|| .|.-+-|..|+. +.+||.|.|||..|........ ..=|+|.++.
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesqeraar---vrCeLCP~kd 72 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQERAAR---VRCELCPHKD 72 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhhhhhcc---ceeecccCcc
Confidence 4588996433 256799999 499999999999 7899999999999976654432 2345555543
No 86
>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression. SETDB1 and other proteins in this group have a similar domain architecture. SETDB1 is a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.
Probab=94.57 E-value=0.033 Score=50.43 Aligned_cols=44 Identities=34% Similarity=0.396 Sum_probs=37.1
Q ss_pred ccCCCeEEEE-eeccCcceeEEEEECCCCCcccchhhhhhhhccc
Q 047726 231 VLEEGWSVEL-RHSTNSYELYAVYCAPDGRTFDSMSEVACYLGLT 274 (1297)
Q Consensus 231 ~le~gwrve~-k~~~~~~~~~~~y~~pdg~~f~s~~e~a~~lgl~ 274 (1297)
||.-||+=.. |+++++.-..|+|.||-|+.+++|+||.+||=.|
T Consensus 5 Pll~gw~R~~~~~~~~~~k~~V~Y~aPCGr~Lr~~~EV~~YL~~t 49 (60)
T cd01395 5 PLLCGFQRMKYRARVGKVKKHVIYKAPCGRSLRNMSEVHRYLRET 49 (60)
T ss_pred ccccCeEEEEEeccCCCcccceEEECCcchhhhcHHHHHHHHHhc
Confidence 6788997554 6667655666999999999999999999999877
No 87
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=94.40 E-value=0.019 Score=68.56 Aligned_cols=51 Identities=31% Similarity=0.722 Sum_probs=42.2
Q ss_pred ccccccccccccccCCC-CEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 27 ETTSLCGACGVAAEAEG-DVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~G-dLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+-|+.|++|-..+.+.- -++.||+|+-+-|.+|-++ +- .|+|-|+|..|.-
T Consensus 191 ~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI--------~f----~peG~WlCrkCi~ 242 (669)
T COG5141 191 EFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGI--------QF----LPEGFWLCRKCIY 242 (669)
T ss_pred hhhhhhHhccccccCCcceEEEecCcchhhhhhcccc--------ee----cCcchhhhhhhcc
Confidence 45789999988665432 6899999999999999994 22 8899999999974
No 88
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=94.27 E-value=0.02 Score=70.38 Aligned_cols=47 Identities=28% Similarity=0.625 Sum_probs=38.7
Q ss_pred cccccccccccCCC--CEEecCC--CCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 30 SLCGACGVAAEAEG--DVVVCDA--CERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 30 ~~C~vCg~~e~~~G--dLlcCD~--C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.-|-||.+ |+.+- -|+-||+ |.-+-|+.|.+ +.+ +|.|+|||..|..
T Consensus 6 GGCCVCSD-ErGWaeNPLVYCDG~nCsVAVHQaCYG--------Ivq----VPtGpWfCrKCes 56 (900)
T KOG0956|consen 6 GGCCVCSD-ERGWAENPLVYCDGHNCSVAVHQACYG--------IVQ----VPTGPWFCRKCES 56 (900)
T ss_pred cceeeecC-cCCCccCceeeecCCCceeeeehhcce--------eEe----cCCCchhhhhhhh
Confidence 46999988 33222 6999996 99999999999 455 8999999999985
No 89
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=93.67 E-value=0.034 Score=71.45 Aligned_cols=46 Identities=30% Similarity=0.788 Sum_probs=43.0
Q ss_pred cccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCC
Q 047726 1226 EGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCV 1274 (1297)
Q Consensus 1226 ~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~ 1274 (1297)
++.|++|+ +.+.++||..|++.||+-|..||+.++|+-.|-|--|.
T Consensus 344 ddhcrf~~---d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~ 389 (1414)
T KOG1473|consen 344 DDHCRFCH---DLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCN 389 (1414)
T ss_pred cccccccC---cccceeecccCCceEEeeecCCccccCCCccchhhhhh
Confidence 35799998 78899999999999999999999999999999999996
No 90
>KOG4161 consensus Methyl-CpG binding transcription regulators [Transcription; Chromatin structure and dynamics]
Probab=93.41 E-value=0.079 Score=60.16 Aligned_cols=46 Identities=28% Similarity=0.547 Sum_probs=41.1
Q ss_pred ccCCCeEEEEeeccCcc---eeEEEEECCCCCcccchhhhhhhhccccc
Q 047726 231 VLEEGWSVELRHSTNSY---ELYAVYCAPDGRTFDSMSEVACYLGLTSS 276 (1297)
Q Consensus 231 ~le~gwrve~k~~~~~~---~~~~~y~~pdg~~f~s~~e~a~~lgl~~~ 276 (1297)
.|-.||-+++++|.+|- -.+|||.+|-|+.|+|-.++|.|||..-.
T Consensus 18 ~lp~GW~~~~~~r~~~~~~g~~dv~~~sp~g~~frsk~~l~~~~~~~~~ 66 (272)
T KOG4161|consen 18 ALPPGWTREEVQRSSGLSAGKSDVYYISPSGKKFRSKPQLARYLGKVGD 66 (272)
T ss_pred CCCCCcchhhhcccCCCcccccceEEeCCcccccccccHHHHHhccccc
Confidence 78899999999997444 47899999999999999999999998853
No 91
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=93.23 E-value=0.097 Score=68.19 Aligned_cols=97 Identities=19% Similarity=0.249 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHH
Q 047726 1073 IIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREF 1152 (1297)
Q Consensus 1073 limKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreV 1152 (1297)
...+-++.+|..+...+.-.+|+-|++. .-++||.++|+.||||.|+..++..|.|. .-+.|-+|+..+
T Consensus 565 p~~kLl~~~l~~lq~kD~~gif~~pvd~----------~e~pdy~~iik~pmd~~t~~~kl~s~~y~-tle~ieed~~l~ 633 (1051)
T KOG0955|consen 565 PFKKLLQKSLDKLQKKDSYGIFAEPVDP----------SELPDYIDIIKKPMDFFTMRLKLESGAYS-TLEPIEEDVNLI 633 (1051)
T ss_pred hHHHHHHHHHHHhhcccccCceeeccCh----------hhcccHHHHhcCccchhhhhhhccccchh-hhhHHHHhHhHh
Confidence 3566788999999999999999999875 22889999999999999999999999999 667788899999
Q ss_pred HhhhhhccCCCchHHHHHHHhhhhhhhh
Q 047726 1153 WNNVRTAFGDQPDFVDLAEKLSRNFESL 1180 (1297)
Q Consensus 1153 WsN~~Tyn~dg~dVv~LAEsLSq~FESr 1180 (1297)
-.||..|+......+..|.++.+.....
T Consensus 634 ~~nc~~yn~~dtv~~r~av~~~e~~~~~ 661 (1051)
T KOG0955|consen 634 VSNCMEYNAKDTVYYRAAVRLRELIKKD 661 (1051)
T ss_pred HhHHHHhhccCeehHhhhHHHHhhhhhH
Confidence 9999999988777777777777644433
No 92
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=93.12 E-value=0.097 Score=67.67 Aligned_cols=50 Identities=50% Similarity=1.325 Sum_probs=45.1
Q ss_pred cccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1226 EGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1226 ~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
...|..|.+.... .+++|+.|+..||.+|+.|++..+|.|+|.|+.|...
T Consensus 155 ~~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 155 YPQCNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred chhhhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 3479999988777 5559999999999999999999999999999999877
No 93
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=92.99 E-value=0.021 Score=46.67 Aligned_cols=34 Identities=32% Similarity=1.101 Sum_probs=20.5
Q ss_pred CCeEEecCCCCCCcccccCCCCCCCCCC-CccCccCC
Q 047726 1239 DSVLLCDTCDAEYHTYCLEPPLVRIPEG-NWYCPSCV 1274 (1297)
Q Consensus 1239 ~~LLLCD~CD~aYHl~CL~PPL~~IPeG-dWyCP~C~ 1274 (1297)
+.+|.|+.|.-..|..|.. +..+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYG--v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG--VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence 5789999999999999999 6688877 89999884
No 94
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=91.38 E-value=0.072 Score=43.62 Aligned_cols=34 Identities=26% Similarity=0.782 Sum_probs=18.0
Q ss_pred CEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccc
Q 047726 44 DVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCV 88 (1297)
Q Consensus 44 dLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~ 88 (1297)
.||.|+.|.=..|..|-++.. . ...++|+|..|.
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~~-----~------~~~~~W~C~~C~ 36 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVSE-----V------PDGDDWLCDRCE 36 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-SS-------------SS-----HHH-
T ss_pred ceEEeCCCCCcCChhhCCccc-----C------CCCCcEECCcCC
Confidence 689999999999999999521 1 222369999884
No 95
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=90.42 E-value=0.31 Score=64.26 Aligned_cols=93 Identities=20% Similarity=0.278 Sum_probs=76.9
Q ss_pred HHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhhhhhc
Q 047726 1080 IVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTA 1159 (1297)
Q Consensus 1080 ~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN~~Ty 1159 (1297)
.+.+.+.+++...+|.+|++-.. +.+|..||.+|||+.+++..+....|. +-+.|++|+.++.+|-..|
T Consensus 1268 ~i~n~~~~~~~t~~f~~Pv~~k~----------v~dyy~vi~~P~~lq~~kk~v~kr~y~-~r~~fle~~~~~~~ns~~y 1336 (1563)
T KOG0008|consen 1268 TIINQARSSPNTYPFPTPVNAKE----------VKDYYRVITPPMDLQTQKKLVRKRLYE-SREHFLEELPLIVSNSTKY 1336 (1563)
T ss_pred HHHHHHhcCCCCcCCCCccchhh----------ccchhhccCCCcchHHHHHHHHHHHHH-HHHHHHHHhHHHhhchhhh
Confidence 45677889999999999966522 789999999999999999999888888 5566999999999999999
Q ss_pred cCCCchHHHHHH-Hhhhhhhhhhhh
Q 047726 1160 FGDQPDFVDLAE-KLSRNFESLYEN 1183 (1297)
Q Consensus 1160 n~dg~dVv~LAE-sLSq~FESrYek 1183 (1297)
+++....+..+. .|+..|+.+-.+
T Consensus 1337 ng~~~~~t~~~q~mls~~~~~~~ek 1361 (1563)
T KOG0008|consen 1337 NGPLASLTRQQQSMLSLCFEKLKEK 1361 (1563)
T ss_pred cCchHHHHHHHHHHHHHHHHhhchh
Confidence 999888877776 455577766544
No 96
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=89.94 E-value=0.19 Score=44.93 Aligned_cols=32 Identities=31% Similarity=0.776 Sum_probs=29.8
Q ss_pred cccccccccccCCCCEEecCCCCCcccccccc
Q 047726 30 SLCGACGVAAEAEGDVVVCDACERGFHLECAG 61 (1297)
Q Consensus 30 ~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~ 61 (1297)
..|.+||++-.+++|++.|..|...||..|-.
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 56999999888889999999999999999985
No 97
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=87.11 E-value=0.32 Score=61.08 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=63.9
Q ss_pred CCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhhhhhccCCCchHHHHHHHhhhhhh
Q 047726 1100 RKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTAFGDQPDFVDLAEKLSRNFE 1178 (1297)
Q Consensus 1100 ~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN~~Tyn~dg~dVv~LAEsLSq~FE 1178 (1297)
++|..++|.+.-+++.|...+.+|||.++|.+++.+ .|......+..|....|.|+..++....+|..++..+...|-
T Consensus 11 ~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~-n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~ 88 (640)
T KOG1474|consen 11 WPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVEN-NYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFP 88 (640)
T ss_pred ccccCccchhhccchhhhcccCCCCCchhhhhhhcc-CccccHhhhhhhccccccchhcccCCccchhhccccchhhcc
Confidence 444555555666699999999999999999999998 776566777888899999999999888888888888877653
No 98
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.26 E-value=1.5 Score=51.66 Aligned_cols=46 Identities=24% Similarity=0.547 Sum_probs=34.0
Q ss_pred cccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 30 SLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 30 ~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+.|++|-. +...||.|-==-|...||-.|++.|+ .+ . -=+||.|..
T Consensus 230 ~~CaIClE-dY~~GdklRiLPC~H~FH~~CIDpWL------~~------~-r~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLE-DYEKGDKLRILPCSHKFHVNCIDPWL------TQ------T-RTFCPVCKR 275 (348)
T ss_pred ceEEEeec-ccccCCeeeEecCCCchhhccchhhH------hh------c-CccCCCCCC
Confidence 59999999 44455666667899999999999655 11 0 226999975
No 99
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=83.96 E-value=0.96 Score=58.88 Aligned_cols=51 Identities=22% Similarity=0.652 Sum_probs=43.6
Q ss_pred cccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccccC
Q 047726 28 TTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKN 90 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~ 90 (1297)
+...|..|.++... --+ .||+|...||..|.. |++.. .++++|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~~-~~~-~~~~~~~~~~~~~~~------~~~~~----~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEE-KLL-LCDSCDDSYHTYCLR------PPLTR----VPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCCc-cce-ecccccCcccccccC------CCCCc----CCcCcccCCccccc
Confidence 36789999997766 245 999999999999999 77777 89999999999863
No 100
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.16 E-value=0.49 Score=53.80 Aligned_cols=76 Identities=24% Similarity=0.441 Sum_probs=42.5
Q ss_pred CCCCCCcccccccccccccccCC----C--CEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccccC---
Q 047726 20 SGSTSSSETTSLCGACGVAAEAE----G--DVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKN--- 90 (1297)
Q Consensus 20 s~sss~~e~d~~C~vCg~~e~~~----G--dLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~--- 90 (1297)
++-....-+|..|++||+.-... | +-+-==.|..+||-.|.+-+- -....++ ||-|..+
T Consensus 215 ~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWc-ivGKkqt-----------CPYCKekVdl 282 (328)
T KOG1734|consen 215 SGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWC-IVGKKQT-----------CPYCKEKVDL 282 (328)
T ss_pred CCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhe-eecCCCC-----------CchHHHHhhH
Confidence 33345566789999999832211 1 011112589999999997321 0133444 9999753
Q ss_pred -CcccccCCCccc--ceecc
Q 047726 91 -GAKSKLWPLGRK--KRILD 107 (1297)
Q Consensus 91 -g~k~k~~PLg~~--~~lld 107 (1297)
..-+++|-...+ .+|||
T Consensus 283 ~rmfsnpWekph~~yg~Lld 302 (328)
T KOG1734|consen 283 KRMFSNPWEKPHVWYGQLLD 302 (328)
T ss_pred hhhccCccccchhHHHHHHH
Confidence 234445544443 44554
No 101
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=80.60 E-value=0.9 Score=48.81 Aligned_cols=31 Identities=32% Similarity=0.960 Sum_probs=26.5
Q ss_pred ccccccc--cccCCCCEEecCCCCCcccccccc
Q 047726 31 LCGACGV--AAEAEGDVVVCDACERGFHLECAG 61 (1297)
Q Consensus 31 ~C~vCg~--~e~~~GdLlcCD~C~R~FHl~Cl~ 61 (1297)
.|.+|+. .+..-|.||.|.||.-+||..|++
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG 33 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLG 33 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcC
Confidence 4889963 455677999999999999999999
No 102
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=77.93 E-value=1.8 Score=57.60 Aligned_cols=68 Identities=21% Similarity=0.276 Sum_probs=57.5
Q ss_pred HHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhhhhhccCCC
Q 047726 1085 AAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTAFGDQ 1163 (1297)
Q Consensus 1085 l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN~~Tyn~dg 1163 (1297)
+..-+.+++|.+++... -+++|..++++|||+.+|......-.|.+. .+|+.||..+.-|...||+.-
T Consensus 1394 ~~~ipes~~f~~~v~~k----------~~~~yy~kik~pmdl~~i~~n~~~~~y~s~-~e~l~dv~~i~~n~~~~ng~e 1461 (1563)
T KOG0008|consen 1394 MKEIPESWPFHEPVNKK----------RVPDYYKKIKNPMDLETILKNIPPHKYDSR-SEFLDDVNLIYVNSVEYNGAE 1461 (1563)
T ss_pred HHhcchhcccccccchh----------hchHHHHHhcChhhHHHHhhcCCccccccH-HHHhhhhHhhcccceeecCcc
Confidence 44567788888887653 368999999999999999999999999855 889999999999999988753
No 103
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=76.70 E-value=0.75 Score=42.47 Aligned_cols=57 Identities=25% Similarity=0.488 Sum_probs=21.5
Q ss_pred cccccccccccCCCC--EEecC--CCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 30 SLCGACGVAAEAEGD--VVVCD--ACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 30 ~~C~vCg~~e~~~Gd--LlcCD--~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
..|.+|.......++ .+.|+ .|.+.||+.||.-++=..+... .....-.+-||.|..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~---~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSR---QSFIPIFGECPYCSS 63 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS----TTT--EEE-TTT-S
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCC---eeecccccCCcCCCC
Confidence 469999885443443 48998 8999999999975431001110 012223456999975
No 104
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=74.71 E-value=2.8 Score=51.60 Aligned_cols=49 Identities=22% Similarity=0.472 Sum_probs=40.6
Q ss_pred cccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 28 TTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.|.+|..|.. .|..+.|+-|-|+||-.|.. |-.+. ..-...|-||.|..
T Consensus 59 ~d~~cfechl----pg~vl~c~vc~Rs~h~~c~s------p~~q~---r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 59 IDPFCFECHL----PGAVLKCIVCHRSFHENCQS------PDPQK---RNYSVPSDKPQPYS 107 (588)
T ss_pred CCcccccccC----CcceeeeehhhccccccccC------cchhh---ccccccccCCcccc
Confidence 3899999999 89999999999999999999 33322 15667899999974
No 105
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=73.60 E-value=3.1 Score=53.03 Aligned_cols=77 Identities=17% Similarity=0.335 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHH
Q 047726 1071 SSIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVR 1150 (1297)
Q Consensus 1071 SdlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVr 1150 (1297)
.+.+...|. ....+.+|.++++. .--+.|..+++-|||+.++-.++..+-|. +.+.|..|+.
T Consensus 291 ~~~~~~~~~-------~~~~s~~~~~kvs~----------~~a~~y~~i~k~pmdl~t~~~k~~~~~y~-~~~~fv~d~~ 352 (720)
T KOG1472|consen 291 QEELYEAAE-------RTEHSTPFLEKVSK----------EDAPNYYQIIKAPMDLSTELKKLKSGPYC-SKEEFVNDLM 352 (720)
T ss_pred CHHHHHHhc-------ccccccccccCCCh----------hhCcchHHhhhcchHHHHHHHHhcccccc-chhHHHHHHH
Confidence 355556655 26677777777554 22578888999999999999999999998 8889999999
Q ss_pred HHHhhhhhccCCCch
Q 047726 1151 EFWNNVRTAFGDQPD 1165 (1297)
Q Consensus 1151 eVWsN~~Tyn~dg~d 1165 (1297)
.+|+||.+|+.+...
T Consensus 353 ~~~~n~~~~n~ee~~ 367 (720)
T KOG1472|consen 353 LIWRNCEKYNSEESH 367 (720)
T ss_pred HHHhcchhhccccch
Confidence 999999999987654
No 106
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=70.46 E-value=2.2 Score=45.99 Aligned_cols=48 Identities=27% Similarity=0.857 Sum_probs=34.8
Q ss_pred cccccc---cCCCCCCeEEecCCCCCCcccccCCCCC------CCCCCC--ccCccCCc
Q 047726 1228 ICKVCG---VDKDDDSVLLCDTCDAEYHTYCLEPPLV------RIPEGN--WYCPSCVV 1275 (1297)
Q Consensus 1228 ~CkVCg---~~~d~~~LLLCD~CD~aYHl~CL~PPL~------~IPeGd--WyCP~C~~ 1275 (1297)
.|.+|+ ...+-+.|+.|-+|-.+||-.||.|-.. .|-.++ --|..|+-
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig 59 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIG 59 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcC
Confidence 378884 4456789999999999999999998652 344443 35666643
No 107
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=69.06 E-value=5.9 Score=52.03 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhCCC------chhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHH
Q 047726 1076 KQCRIVLRQAAAADD------EKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDV 1149 (1297)
Q Consensus 1076 KRCr~VLr~l~ss~~------s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDV 1149 (1297)
++|.+|+........ +.+|... +...-.++|..+|.+|+++..|..++..+.|. +......|+
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~----------~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~-~~~~~~~~~ 1095 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKL----------PSRKEYPDYYEIIKKPVAIDKIKKRIENHKYN-SLKELEKDF 1095 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccC----------cccccccchHHHhcchhhHHHHhhhccccccc-hHHHHHHHH
Confidence 568888877764333 3334333 23345889999999999999999999999998 666677899
Q ss_pred HHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1150 REFWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1150 reVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
...+.|..+|+..++.|..-|..|...|++.+..
T Consensus 1096 ~~~~~na~~~~~egs~~y~d~~~l~~~~~~~~~~ 1129 (1157)
T KOG0386|consen 1096 MLLFNNARTYNEEGSRVYEDAIVLQSVFKSARQE 1129 (1157)
T ss_pred HhhcchhhhhccCCceechhHHHHHHHHhhhHHH
Confidence 9999999999999999988888888877776654
No 108
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=66.72 E-value=1.6 Score=36.11 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=26.1
Q ss_pred cccccccccccCCCCEEecCCCCCcccccccccc
Q 047726 30 SLCGACGVAAEAEGDVVVCDACERGFHLECAGIL 63 (1297)
Q Consensus 30 ~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~ 63 (1297)
+.|.+|...-..+..++... |...||..|+..+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~ 33 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEW 33 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHH
Confidence 46999999776665777777 9999999999843
No 109
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=66.62 E-value=6.9 Score=49.40 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=64.0
Q ss_pred CCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhhhhhccCCCchHHHHHHHhhhhhhhhh
Q 047726 1109 DDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLY 1181 (1297)
Q Consensus 1109 i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrY 1181 (1297)
...=.+.|+.++..||-|.-|..|+..+.|. ..+.|..|+..+..|++.|+..++.+...+..|...|.++-
T Consensus 84 ~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~-~~~~f~~D~~lm~ena~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 84 SRKEFPEYYYVIQQPISLDQIKRKVKKGRYK-RLSFFQLDFLLMTENARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred ccccCCCcceeecCcccHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhhhcchhhhh
Confidence 3344689999999999999999999999998 67789999999999999999999999999999888877754
No 110
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=65.70 E-value=3.3 Score=37.27 Aligned_cols=33 Identities=39% Similarity=0.904 Sum_probs=28.3
Q ss_pred ccccccccCC-CCCCeEEecCCCCCCcccccCCC
Q 047726 1227 GICKVCGVDK-DDDSVLLCDTCDAEYHTYCLEPP 1259 (1297)
Q Consensus 1227 ~~CkVCg~~~-d~~~LLLCD~CD~aYHl~CL~PP 1259 (1297)
..|.+|+..- +.+.++.|..|...||-.|+...
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhhC
Confidence 4799999765 47899999999999999999753
No 111
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=62.22 E-value=5.5 Score=43.60 Aligned_cols=44 Identities=23% Similarity=0.625 Sum_probs=33.5
Q ss_pred ccccccccccccC----CCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccccCC
Q 047726 29 TSLCGACGVAAEA----EGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKNG 91 (1297)
Q Consensus 29 d~~C~vCg~~e~~----~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~g 91 (1297)
...|.+|..++.- .....-|+.|...||..|.. . .. ||.|.+..
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~------~--~~-----------CpkC~R~~ 199 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR------K--KS-----------CPKCARRQ 199 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC------C--CC-----------CCCcHhHh
Confidence 5789999874321 12678999999999999999 2 33 99998643
No 112
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=58.05 E-value=4.7 Score=31.48 Aligned_cols=29 Identities=38% Similarity=0.863 Sum_probs=13.3
Q ss_pred ccccccccccCCCCEEecCCCCCccccccc
Q 047726 31 LCGACGVAAEAEGDVVVCDACERGFHLECA 60 (1297)
Q Consensus 31 ~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl 60 (1297)
.|.+|+.+... +-.-.|..|+-.+|+.|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 59999995554 478999999999999985
No 113
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=54.53 E-value=1.5 Score=40.54 Aligned_cols=50 Identities=22% Similarity=0.527 Sum_probs=20.5
Q ss_pred ccccccccCCC-C--CCeEEec--CCCCCCcccccCCCCCCCCCC-------CccCccCCcc
Q 047726 1227 GICKVCGVDKD-D--DSVLLCD--TCDAEYHTYCLEPPLVRIPEG-------NWYCPSCVVR 1276 (1297)
Q Consensus 1227 ~~CkVCg~~~d-~--~~LLLCD--~CD~aYHl~CL~PPL~~IPeG-------dWyCP~C~~~ 1276 (1297)
..|.+|-.... . ...+.|+ .|...||+.||.--+.+.+.+ .+-||.|...
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 46999976543 2 2458898 999999999986333222211 3569999754
No 114
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=52.93 E-value=7.2 Score=48.79 Aligned_cols=23 Identities=35% Similarity=0.819 Sum_probs=19.3
Q ss_pred ccccccccccccCCCCEEecCCCCCcc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDACERGF 55 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~C~R~F 55 (1297)
-+.|..|++ -|+.+.||.|.+.+
T Consensus 68 ~~~c~~c~G----~gkv~~c~~cG~~~ 90 (715)
T COG1107 68 YDTCPECGG----TGKVLTCDICGDII 90 (715)
T ss_pred EeecccCCC----ceeEEeecccccee
Confidence 567888888 78899999998887
No 115
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.09 E-value=12 Score=44.44 Aligned_cols=59 Identities=24% Similarity=0.545 Sum_probs=41.6
Q ss_pred ccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcccccccccccccc
Q 047726 1227 GICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNSMVQGASEHSQ 1288 (1297)
Q Consensus 1227 ~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~~~Q~~~e~~E 1288 (1297)
+.|.+|-.+-..+..|-==-|...||..|.+|=|.+-- =+||-|+...+...+.....|
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r---~~CPvCK~di~~~~~~~~~~e 288 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTR---TFCPVCKRDIRTDSGSEPVSE 288 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcC---ccCCCCCCcCCCCCCCCCccC
Confidence 47999987655555554568999999999999775541 279999887665544443333
No 116
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=49.64 E-value=12 Score=40.94 Aligned_cols=42 Identities=31% Similarity=0.850 Sum_probs=33.0
Q ss_pred ccccccccCC-----CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCccc
Q 047726 1227 GICKVCGVDK-----DDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1227 ~~CkVCg~~~-----d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~ 1277 (1297)
..|++|+..+ +.+....|..|...||..|... =.||.|...+
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R~~ 199 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCARRQ 199 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHhHh
Confidence 4799998654 4567889999999999999993 1399997543
No 117
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.70 E-value=6.4 Score=45.24 Aligned_cols=62 Identities=23% Similarity=0.510 Sum_probs=39.3
Q ss_pred cccCCCCCCcccccccccccCCCCCC-------eEEecCCCCCCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1215 QTSEIPKAPWDEGICKVCGVDKDDDS-------VLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1215 ~~s~lprapw~~~~CkVCg~~~d~~~-------LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
+.+.+|....++..|.||++.-+.+. -+.==.|...||-+|..== -+-.-.=.||.|+.+-.
T Consensus 213 s~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGW--civGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 213 SPSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGW--CIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhh--eeecCCCCCchHHHHhh
Confidence 45678888888999999997543222 1122268899999997710 00000237999977643
No 118
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=46.59 E-value=10 Score=36.97 Aligned_cols=30 Identities=33% Similarity=0.867 Sum_probs=26.4
Q ss_pred ccccccccccccCCCCEEecCC--CCCcccccccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDA--CERGFHLECAG 61 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~--C~R~FHl~Cl~ 61 (1297)
...|.+|+.. .|-.+-|.. |.+.||..|..
T Consensus 55 ~~~C~iC~~~---~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKS---GGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCC---CceeEEcCCCCCCcCCCHHHHH
Confidence 5789999993 568899998 99999999997
No 119
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=45.49 E-value=6.9 Score=46.63 Aligned_cols=43 Identities=26% Similarity=0.579 Sum_probs=32.1
Q ss_pred cccccccccccccCCCCEEecC---------------CCCCcccccccccccccCCcccCCCCCCCCCCccccccccC
Q 047726 28 TTSLCGACGVAAEAEGDVVVCD---------------ACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKN 90 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdLlcCD---------------~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~ 90 (1297)
+|.+|.+|-+ +++-=| -|...||+.|+.+|| --.++ ||-|...
T Consensus 286 ~D~~C~ICmd------e~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~---ERqQT-----------CPICr~p 343 (491)
T COG5243 286 SDRTCTICMD------EMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWL---ERQQT-----------CPICRRP 343 (491)
T ss_pred CCCeEEEecc------cccCCCCccCcccccCCcccccccceeeHHHHHHHH---HhccC-----------CCcccCc
Confidence 4889999998 333333 388889999999887 34455 9999863
No 120
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=45.47 E-value=11 Score=43.07 Aligned_cols=47 Identities=30% Similarity=0.779 Sum_probs=22.5
Q ss_pred CCCCcccccccccccCC-------C---CCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1220 PKAPWDEGICKVCGVDK-------D---DDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1220 prapw~~~~CkVCg~~~-------d---~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
+...|+.+.|.|||..- . +...|.|..|...||+.-+ -||.|-....
T Consensus 166 ~~~~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~------------~Cp~Cg~~~~ 222 (290)
T PF04216_consen 166 PPEGWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRI------------KCPYCGNTDH 222 (290)
T ss_dssp S---TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TT------------S-TTT---SS
T ss_pred ccCCccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCC------------CCcCCCCCCC
Confidence 34578889999999751 2 3488999999999986433 4888865543
No 121
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=45.35 E-value=8.9 Score=37.44 Aligned_cols=47 Identities=23% Similarity=0.487 Sum_probs=30.6
Q ss_pred ccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCccc
Q 047726 1229 CKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1229 CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~ 1277 (1297)
|..|.-.+++-.++++ .|...||+.|+.--|.+-. .+=.||-|+..-
T Consensus 35 Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~-~~~~CPmCR~~w 81 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQS-SKGQCPMCRQPW 81 (85)
T ss_pred CCCccCCCCCCceeec-cCccHHHHHHHHHHHcccc-CCCCCCCcCCee
Confidence 4444444444445544 4999999999887776532 233799998653
No 122
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=44.23 E-value=7.9 Score=50.05 Aligned_cols=60 Identities=20% Similarity=0.456 Sum_probs=45.3
Q ss_pred ccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccccCCcccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKNGAKSK 95 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~g~k~k 95 (1297)
-..|.+|-..-.....+--|-.|.++||+.|..-|- -..+. .-...|-||.|+...++..
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WA---rs~ek----~~~~~WrCP~Cqsv~~~~~ 250 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWA---RSSEK----TGQDGWRCPACQSVSKTVP 250 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHH---HHhhh----ccCccccCCcccchhccCC
Confidence 467999999777777899999999999999997543 11222 4557899999996544333
No 123
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=42.63 E-value=13 Score=34.88 Aligned_cols=31 Identities=32% Similarity=0.792 Sum_probs=26.1
Q ss_pred ccccccccccccCCCCEEecCC--CCCccccccccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDA--CERGFHLECAGI 62 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~--C~R~FHl~Cl~v 62 (1297)
...|..|+.+ .|-.+-|.. |.+.||..|...
T Consensus 36 ~~~C~~C~~~---~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKK---GGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCC---CCeEEEEeCCCCCcEEChHHHcc
Confidence 6789999992 278888885 999999999973
No 124
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=40.04 E-value=13 Score=44.06 Aligned_cols=47 Identities=26% Similarity=0.580 Sum_probs=36.2
Q ss_pred ccccccCCCCEEecCCCCCcccccc--cccccccCCcccCCCCCCCCCCccccccccC
Q 047726 35 CGVAAEAEGDVVVCDACERGFHLEC--AGILMCCHQQQQQQPYHHNLLEWVCADCVKN 90 (1297)
Q Consensus 35 Cg~~e~~~GdLlcCD~C~R~FHl~C--l~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~ 90 (1297)
|-.+..+.+..+-||.|..+||-.| +++ |-... .+...|+|..|...
T Consensus 65 ~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~-----~~~e~----p~~~~~~c~~c~~~ 113 (345)
T KOG1632|consen 65 CYKPCDPDDLMEQCDLCEDWYHGECWEVGT-----AEKEA----PKEDPKVCDECKEA 113 (345)
T ss_pred cccccCchhhhhccccccccccccccccCc-----hhhcC----Cccccccccccchh
Confidence 5555555557899999999999999 883 33333 77889999999754
No 125
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=39.35 E-value=17 Score=43.79 Aligned_cols=97 Identities=14% Similarity=0.069 Sum_probs=66.4
Q ss_pred HHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhhhhhc
Q 047726 1080 IVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTA 1159 (1297)
Q Consensus 1080 ~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN~~Ty 1159 (1297)
++++.+.+.+.-+-|-.|| .+++. ++|.+++++|||+-|+..+.+-+.|. .-..|-.|-+.+-.|...|
T Consensus 26 hhlrkl~sKdp~q~fafpl-t~~ma---------p~y~~iis~Pmd~~t~r~kidd~~yl-~L~~m~~d~kl~~~na~~y 94 (418)
T KOG1828|consen 26 HHLRKLPSKDPKQKFAFPL-TDKMA---------PNYLEIISEPMDRITKRSKIDDTRYL-VLSQMEFDRKLPDGNATLY 94 (418)
T ss_pred HHHHhccccChhhhhcccc-chhhc---------cchHhhhhcccccccccccCCCccce-echhhhhhhcccccchhhh
Confidence 5556665555544455443 43443 68999999999999999999999998 4455788888888888888
Q ss_pred cCCCchHHHHHHHhhhhhhhhhhhhhHh
Q 047726 1160 FGDQPDFVDLAEKLSRNFESLYENEIVT 1187 (1297)
Q Consensus 1160 n~dg~dVv~LAEsLSq~FESrYekqvL~ 1187 (1297)
+.-...+...|..|+...-...+.+++.
T Consensus 95 n~~~Tv~~~aaKrL~~v~~~~~qe~~l~ 122 (418)
T KOG1828|consen 95 NLHPTVPIVAAKRLCPVRLGMTQERLLS 122 (418)
T ss_pred hcCCccccccccccchhhcchhhHHHHH
Confidence 7665555555666666444444444443
No 126
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=38.78 E-value=23 Score=43.56 Aligned_cols=58 Identities=22% Similarity=0.297 Sum_probs=44.7
Q ss_pred ccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccccCCcccccCCCccc
Q 047726 27 ETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKNGAKSKLWPLGRK 102 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~g~k~k~~PLg~~ 102 (1297)
+..+.|.+|.+ +|++++||.|...+|..|..+ ..++.-|.|..|.. +.+..-|-++-.
T Consensus 87 ~~~~~c~vc~~----ggs~v~~~s~~~~~~r~c~~~-------------~~~~c~~~~~d~~~-~~~~~~~~~vw~ 144 (463)
T KOG1081|consen 87 IEPSECFVCFK----GGSLVTCKSRIQAPHRKCKPA-------------QLEKCSKRCTDCRA-FKKREVGDLVWS 144 (463)
T ss_pred CCcchhccccC----CCccceeccccccccccCcCc-------------cCcccccCCcceee-eccccceeEEeE
Confidence 34799999999 999999999999999999883 26677888888876 334444444443
No 127
>PHA02929 N1R/p28-like protein; Provisional
Probab=38.15 E-value=15 Score=41.56 Aligned_cols=48 Identities=19% Similarity=0.448 Sum_probs=31.1
Q ss_pred cccccccccccccCCC----CEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 28 TTSLCGACGVAAEAEG----DVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~G----dLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.+..|++|...-.... .+..=..|...||..|+..++ ...+ .||.|..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl------~~~~--------tCPlCR~ 224 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWK------KEKN--------TCPVCRT 224 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHH------hcCC--------CCCCCCC
Confidence 3678999998422111 122335799999999998544 1211 3999975
No 128
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=37.90 E-value=35 Score=40.09 Aligned_cols=33 Identities=24% Similarity=0.543 Sum_probs=25.8
Q ss_pred CcccccccccccC-----------CCCCCeEEecCCCCCCcccc
Q 047726 1223 PWDEGICKVCGVD-----------KDDDSVLLCDTCDAEYHTYC 1255 (1297)
Q Consensus 1223 pw~~~~CkVCg~~-----------~d~~~LLLCD~CD~aYHl~C 1255 (1297)
.|+.+.|.|||.. .++...|.|..|...||+.-
T Consensus 181 ~~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R 224 (305)
T TIGR01562 181 RESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVR 224 (305)
T ss_pred cCCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccC
Confidence 3567799999974 13457899999999999763
No 129
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=37.71 E-value=2.2 Score=35.39 Aligned_cols=43 Identities=26% Similarity=0.595 Sum_probs=28.4
Q ss_pred ccccccccCCC-CCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCC
Q 047726 1227 GICKVCGVDKD-DDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCV 1274 (1297)
Q Consensus 1227 ~~CkVCg~~~d-~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~ 1274 (1297)
+.|.+|...-. ++.+.... |...||..|+..-+..- -.||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 35889976654 34444444 99999999998766442 2788884
No 130
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=37.35 E-value=27 Score=41.05 Aligned_cols=32 Identities=28% Similarity=0.646 Sum_probs=25.6
Q ss_pred CcccccccccccC----------CCCCCeEEecCCCCCCccc
Q 047726 1223 PWDEGICKVCGVD----------KDDDSVLLCDTCDAEYHTY 1254 (1297)
Q Consensus 1223 pw~~~~CkVCg~~----------~d~~~LLLCD~CD~aYHl~ 1254 (1297)
.|..+.|.|||.. .++...|.|..|...||+.
T Consensus 184 ~~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~ 225 (309)
T PRK03564 184 GEQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV 225 (309)
T ss_pred ccCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc
Confidence 3567899999975 2355789999999999975
No 131
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=31.73 E-value=31 Score=32.81 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=22.5
Q ss_pred ccccccccccccCCCCEEecCCCCCcccccccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDACERGFHLECAG 61 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~ 61 (1297)
+..|.+|+++=... .+... -|...||..|..
T Consensus 78 ~~~C~vC~k~l~~~-~f~~~-p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNS-VFVVF-PCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCc-eEEEe-CCCeEEeccccc
Confidence 57799999965542 44443 456999999985
No 132
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=30.42 E-value=22 Score=27.81 Aligned_cols=28 Identities=32% Similarity=0.785 Sum_probs=12.5
Q ss_pred cccccccCCCCCCeEEecCCCCCCcccc
Q 047726 1228 ICKVCGVDKDDDSVLLCDTCDAEYHTYC 1255 (1297)
Q Consensus 1228 ~CkVCg~~~d~~~LLLCD~CD~aYHl~C 1255 (1297)
.|.+|++..+++..-.|..|+-..|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 4889998777768899999999999887
No 133
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=29.20 E-value=44 Score=40.69 Aligned_cols=54 Identities=30% Similarity=0.642 Sum_probs=40.1
Q ss_pred cccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccccCCcccc
Q 047726 30 SLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKNGAKSK 95 (1297)
Q Consensus 30 ~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~g~k~k 95 (1297)
..| .|+..+..+|.++.|+.|+++=|..|+++ ... ...+...|..|..+.....
T Consensus 87 ~~c-~c~~~~~~~g~~i~c~~c~~Wqh~~C~g~------~~~-----~~p~~y~c~~c~~~~~~~~ 140 (508)
T KOG1844|consen 87 SRC-DCGLEDDMEGLMIQCDWCGRWQHKICCGS------FKS-----TKPDKYVCEICTPRNKEVE 140 (508)
T ss_pred ccc-ccccccCCCceeeCCcccCcccCceeeee------cCC-----CCchhceeeeeccccccch
Confidence 445 58886665789999999999999999993 121 2256778999987655444
No 134
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=28.58 E-value=27 Score=30.66 Aligned_cols=17 Identities=29% Similarity=1.068 Sum_probs=10.2
Q ss_pred CCCCCCCCccCccCCccc
Q 047726 1260 LVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1260 L~~IPeGdWyCP~C~~~~ 1277 (1297)
...+|+ +|.||.|...+
T Consensus 28 F~~Lp~-~w~CP~C~a~K 44 (47)
T PF00301_consen 28 FEDLPD-DWVCPVCGAPK 44 (47)
T ss_dssp GGGS-T-T-B-TTTSSBG
T ss_pred HHHCCC-CCcCcCCCCcc
Confidence 345665 79999998764
No 135
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=27.90 E-value=33 Score=33.52 Aligned_cols=29 Identities=24% Similarity=0.820 Sum_probs=24.5
Q ss_pred ccccccccCCCCCCeEEecC--CCCCCcccccC
Q 047726 1227 GICKVCGVDKDDDSVLLCDT--CDAEYHTYCLE 1257 (1297)
Q Consensus 1227 ~~CkVCg~~~d~~~LLLCD~--CD~aYHl~CL~ 1257 (1297)
..|.+|++. .+..+-|.. |...||..|..
T Consensus 56 ~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 56 LKCSICGKS--GGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CcCcCCCCC--CceeEEcCCCCCCcCCCHHHHH
Confidence 479999854 678899987 99999999965
No 136
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=27.08 E-value=18 Score=28.31 Aligned_cols=42 Identities=21% Similarity=0.536 Sum_probs=29.0
Q ss_pred ccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCc
Q 047726 1229 CKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVV 1275 (1297)
Q Consensus 1229 CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~ 1275 (1297)
|.+|...- ........|...||..|+..-+.. +...||.|..
T Consensus 2 C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEF--REPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRT 43 (45)
T ss_pred CCcCchhh--hCceEecCCCChhcHHHHHHHHHh---CcCCCCCCCC
Confidence 77786433 234445569999999999865554 4567999965
No 137
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=23.36 E-value=45 Score=32.78 Aligned_cols=47 Identities=19% Similarity=0.476 Sum_probs=27.2
Q ss_pred cccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 30 SLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 30 ~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
..|..|..|...- -++.+. |...||+-|+.-++ .+ ....=.||-|..
T Consensus 33 g~Cp~Ck~Pgd~C-plv~g~-C~H~FH~hCI~kWl------~~-----~~~~~~CPmCR~ 79 (85)
T PF12861_consen 33 GCCPDCKFPGDDC-PLVWGK-CSHNFHMHCILKWL------ST-----QSSKGQCPMCRQ 79 (85)
T ss_pred cCCCCccCCCCCC-ceeecc-CccHHHHHHHHHHH------cc-----ccCCCCCCCcCC
Confidence 4455555533221 445444 99999999998433 11 011125999975
No 138
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=23.06 E-value=47 Score=29.53 Aligned_cols=16 Identities=31% Similarity=1.091 Sum_probs=12.3
Q ss_pred CCCCCCCccCccCCccc
Q 047726 1261 VRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1261 ~~IPeGdWyCP~C~~~~ 1277 (1297)
+++|. +|.||.|...+
T Consensus 29 ~~Lp~-~w~CP~C~a~K 44 (50)
T cd00730 29 EDLPD-DWVCPVCGAGK 44 (50)
T ss_pred hHCCC-CCCCCCCCCcH
Confidence 45665 89999997664
No 139
>COG1773 Rubredoxin [Energy production and conversion]
Probab=22.71 E-value=54 Score=29.96 Aligned_cols=42 Identities=31% Similarity=0.774 Sum_probs=24.6
Q ss_pred ccccccccCCCCCCe-EEecCCCCCCcccccCCCCCCCCCCCccCccCCccc
Q 047726 1227 GICKVCGVDKDDDSV-LLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1227 ~~CkVCg~~~d~~~L-LLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~ 1277 (1297)
..|.+||=.-++++- --|+.|+. -+-+.+|. +|.||.|-.++
T Consensus 4 ~~C~~CG~vYd~e~Gdp~~gi~pg--------T~fedlPd-~w~CP~Cg~~K 46 (55)
T COG1773 4 WRCSVCGYVYDPEKGDPRCGIAPG--------TPFEDLPD-DWVCPECGVGK 46 (55)
T ss_pred eEecCCceEeccccCCccCCCCCC--------CchhhCCC-ccCCCCCCCCH
Confidence 358888754333221 22444433 23467776 89999998643
No 140
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=22.12 E-value=2.1e+02 Score=27.22 Aligned_cols=31 Identities=26% Similarity=0.610 Sum_probs=21.9
Q ss_pred cccccccccCCCCCCeEEecCCCCCCcccccC
Q 047726 1226 EGICKVCGVDKDDDSVLLCDTCDAEYHTYCLE 1257 (1297)
Q Consensus 1226 ~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~ 1257 (1297)
...|.+|++.-..+ ...---|+..+|..|..
T Consensus 78 ~~~C~vC~k~l~~~-~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNS-VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCc-eEEEeCCCeEEeccccc
Confidence 45799999866553 33344566889999975
No 141
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=21.05 E-value=82 Score=24.91 Aligned_cols=28 Identities=29% Similarity=0.738 Sum_probs=22.5
Q ss_pred ccccccccccCCCC-EEecCCCCCccccccc
Q 047726 31 LCGACGVAAEAEGD-VVVCDACERGFHLECA 60 (1297)
Q Consensus 31 ~C~vCg~~e~~~Gd-LlcCD~C~R~FHl~Cl 60 (1297)
.|.+|++ ...|. .--|+.|.-..|..|.
T Consensus 2 ~C~~C~~--~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRR--KIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCC--CcCCCEeEEeCCCCCeEcCccC
Confidence 5999987 33446 8899999999999985
No 142
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=20.78 E-value=86 Score=26.84 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=26.3
Q ss_pred ccccccccccccc-CCCCEEecCCCCCcccccccc
Q 047726 28 TTSLCGACGVAAE-AEGDVVVCDACERGFHLECAG 61 (1297)
Q Consensus 28 ~d~~C~vCg~~e~-~~GdLlcCD~C~R~FHl~Cl~ 61 (1297)
...+|.+|++.-. ....-+-|..|....|..|+.
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGC
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhh
Confidence 4578999999662 234789999999999999998
Done!