Query 047726
Match_columns 1297
No_of_seqs 385 out of 1376
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 03:44:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wzo_A Transforming growth fac 99.9 1.8E-27 6E-32 238.3 10.8 133 365-637 4-143 (146)
2 3mb3_A PH-interacting protein; 99.5 5.4E-14 1.9E-18 138.6 8.5 105 1072-1187 20-125 (135)
3 3nxb_A CAT eye syndrome critic 99.5 4E-14 1.4E-18 136.1 7.3 101 1072-1183 15-115 (116)
4 2ouo_A HUNK1 protein, bromodom 99.5 4.7E-14 1.6E-18 138.8 7.8 102 1073-1183 22-126 (130)
5 2yyn_A Transcription intermedi 99.5 9.1E-14 3.1E-18 137.5 8.7 102 1070-1183 17-120 (135)
6 3d7c_A General control of amin 99.5 1.1E-13 3.6E-18 132.6 8.7 102 1071-1183 5-106 (112)
7 3g0l_A Hwalp4, bromodomain adj 99.5 1.3E-13 4.5E-18 132.7 9.2 101 1072-1183 12-112 (117)
8 3fkm_X Signaling protein; brom 99.4 2.4E-13 8.3E-18 138.9 9.7 110 1069-1187 17-126 (166)
9 2oss_A HUNK1 protein, bromodom 99.4 3.5E-13 1.2E-17 132.1 10.3 103 1072-1183 20-122 (127)
10 3jvl_A Bromodomain-containing 99.4 7.7E-14 2.6E-18 134.9 5.2 103 1072-1183 8-113 (120)
11 1e6i_A Transcriptional activat 99.4 3.1E-13 1.1E-17 131.4 8.4 98 1075-1183 15-112 (121)
12 2i7k_A Bromodomain-containing 99.4 2.9E-13 9.8E-18 131.3 8.1 105 1072-1187 7-111 (117)
13 3q2e_A Bromodomain and WD repe 99.4 3.2E-13 1.1E-17 131.4 8.4 105 1072-1187 9-114 (123)
14 2dat_A Possible global transcr 99.4 4.3E-13 1.5E-17 130.6 8.9 103 1071-1184 11-119 (123)
15 4alg_A Bromodomain-containing 99.4 4.8E-13 1.6E-17 135.2 8.8 103 1072-1183 31-133 (154)
16 2grc_A Probable global transcr 99.4 6.3E-13 2.2E-17 130.5 7.8 103 1071-1184 9-118 (129)
17 3p1f_A CREB-binding protein; s 99.4 7.2E-13 2.5E-17 127.9 7.5 106 1070-1184 8-114 (119)
18 3o36_A Transcription intermedi 99.4 2.1E-12 7.2E-17 132.8 11.1 103 1069-1183 77-181 (184)
19 2d9e_A Peregrin; four-helix bu 99.3 9.3E-13 3.2E-17 128.2 7.4 101 1072-1183 6-106 (121)
20 1mm2_A MI2-beta; PHD, zinc fin 99.3 4.8E-13 1.7E-17 116.6 4.6 55 25-93 5-59 (61)
21 3iu5_A Protein polybromo-1; PB 99.3 7.7E-13 2.6E-17 127.4 6.1 101 1072-1183 4-110 (116)
22 1f62_A Transcription factor WS 99.3 4.1E-13 1.4E-17 112.4 3.5 50 1228-1277 2-51 (51)
23 2yql_A PHD finger protein 21A; 99.3 5.5E-13 1.9E-17 114.1 4.2 55 21-89 1-55 (56)
24 3ljw_A Protein polybromo-1; al 99.3 1.6E-12 5.4E-17 126.0 7.5 104 1069-1183 4-113 (120)
25 3mb4_A Protein polybromo-1; PB 99.3 1.8E-12 6.1E-17 126.3 7.2 101 1072-1183 14-120 (124)
26 1fp0_A KAP-1 corepressor; PHD 99.3 1.7E-12 5.9E-17 121.2 6.0 58 18-89 14-71 (88)
27 3hme_A Bromodomain-containing 99.3 3.7E-12 1.3E-16 124.2 8.7 102 1074-1186 14-115 (123)
28 2l5u_A Chromodomain-helicase-D 99.3 1.3E-12 4.4E-17 113.9 4.9 53 26-92 8-60 (61)
29 3mqm_A Probable histone-lysine 99.3 3.8E-12 1.3E-16 124.2 8.6 111 1071-1186 7-117 (126)
30 3rcw_A Bromodomain-containing 99.3 3.2E-12 1.1E-16 126.0 8.0 100 1074-1184 14-113 (135)
31 2ri7_A Nucleosome-remodeling f 99.3 2.9E-12 9.9E-17 130.3 7.0 102 1071-1183 70-171 (174)
32 2e6r_A Jumonji/ARID domain-con 99.3 9.3E-13 3.2E-17 123.4 2.9 52 1225-1276 15-66 (92)
33 1xwh_A Autoimmune regulator; P 99.3 1.5E-12 5.2E-17 114.9 3.9 50 26-89 5-54 (66)
34 3k2j_A Protein polybromo-1; PB 99.3 4.8E-12 1.6E-16 124.8 7.4 108 1072-1184 16-123 (130)
35 2lri_C Autoimmune regulator; Z 99.3 2.3E-12 7.8E-17 114.4 4.4 50 1224-1276 10-59 (66)
36 1fp0_A KAP-1 corepressor; PHD 99.3 5.2E-12 1.8E-16 118.0 6.6 53 1224-1279 23-75 (88)
37 1mm2_A MI2-beta; PHD, zinc fin 99.2 3.4E-12 1.2E-16 111.2 4.7 50 1225-1277 8-57 (61)
38 1xwh_A Autoimmune regulator; P 99.2 2.7E-12 9.2E-17 113.3 4.0 51 1225-1278 7-57 (66)
39 2puy_A PHD finger protein 21A; 99.2 1.8E-12 6.1E-17 112.3 2.1 50 27-90 3-52 (60)
40 2lri_C Autoimmune regulator; Z 99.2 5E-12 1.7E-16 112.2 4.2 49 27-89 10-58 (66)
41 3asl_A E3 ubiquitin-protein li 99.2 4.7E-12 1.6E-16 113.4 3.7 54 1223-1276 13-69 (70)
42 2e6s_A E3 ubiquitin-protein li 99.2 7.7E-12 2.6E-16 114.0 4.5 54 1222-1275 20-76 (77)
43 3o36_A Transcription intermedi 99.2 1E-11 3.5E-16 127.7 4.8 49 27-89 2-50 (184)
44 2ro1_A Transcription intermedi 99.2 5.2E-11 1.8E-15 123.9 10.0 97 1072-1184 75-176 (189)
45 2puy_A PHD finger protein 21A; 99.2 5E-12 1.7E-16 109.5 1.8 51 1225-1278 4-54 (60)
46 3uv4_A Second bromodomain of h 99.2 4.6E-11 1.6E-15 121.4 9.0 102 1073-1185 25-131 (158)
47 3tlp_A Protein polybromo-1; PB 99.2 2.5E-11 8.6E-16 121.6 6.9 99 1074-1183 25-130 (150)
48 3u5n_A E3 ubiquitin-protein li 99.2 1E-11 3.5E-16 130.2 4.3 78 1072-1161 80-160 (207)
49 2yt5_A Metal-response element- 99.2 5.8E-12 2E-16 110.3 2.0 55 1224-1278 4-63 (66)
50 1wev_A Riken cDNA 1110020M19; 99.2 6.8E-12 2.3E-16 116.6 2.5 54 1226-1279 16-75 (88)
51 2l5u_A Chromodomain-helicase-D 99.2 9E-12 3.1E-16 108.6 3.1 48 1226-1276 11-58 (61)
52 2yql_A PHD finger protein 21A; 99.2 8.2E-12 2.8E-16 106.8 2.8 48 1225-1275 8-55 (56)
53 3u5n_A E3 ubiquitin-protein li 99.2 4.4E-11 1.5E-15 125.4 8.6 53 26-92 4-56 (207)
54 3shb_A E3 ubiquitin-protein li 99.1 1.2E-11 4.2E-16 112.8 3.5 53 1223-1275 21-76 (77)
55 1f62_A Transcription factor WS 99.1 1.1E-11 3.8E-16 103.8 2.9 48 31-89 2-49 (51)
56 1wev_A Riken cDNA 1110020M19; 99.1 8.5E-12 2.9E-16 116.0 2.1 56 28-89 15-71 (88)
57 3dai_A ATPase family AAA domai 99.1 6.7E-11 2.3E-15 116.2 8.3 97 1074-1181 11-111 (130)
58 2e6r_A Jumonji/ARID domain-con 99.1 1.4E-11 4.9E-16 115.4 3.2 53 26-89 13-65 (92)
59 2ku3_A Bromodomain-containing 99.1 1.5E-11 5.3E-16 110.5 2.2 54 24-89 11-65 (71)
60 2yt5_A Metal-response element- 99.1 2.5E-11 8.5E-16 106.3 2.9 58 26-90 3-61 (66)
61 2dkw_A Hypothetical protein KI 99.1 2.1E-10 7.1E-15 113.5 9.7 94 1072-1181 11-108 (131)
62 3uv5_A Transcription initiatio 99.1 1.4E-10 4.9E-15 125.7 8.6 102 1072-1184 13-114 (265)
63 3aad_A Transcription initiatio 99.1 1.3E-10 4.6E-15 127.8 7.8 116 1056-1183 31-146 (292)
64 3ask_A E3 ubiquitin-protein li 99.0 6.5E-11 2.2E-15 126.7 3.8 49 1228-1276 176-225 (226)
65 2ku3_A Bromodomain-containing 99.0 3.5E-11 1.2E-15 108.2 1.5 53 1223-1277 13-67 (71)
66 2ro1_A Transcription intermedi 99.0 7.8E-11 2.7E-15 122.6 3.8 47 29-89 2-48 (189)
67 2e6s_A E3 ubiquitin-protein li 99.0 1.1E-10 3.9E-15 106.4 4.3 50 29-89 26-76 (77)
68 2l43_A N-teminal domain from h 99.0 4.7E-11 1.6E-15 111.2 1.2 54 1225-1280 24-79 (88)
69 2l43_A N-teminal domain from h 99.0 8.6E-11 2.9E-15 109.4 3.0 53 25-89 21-74 (88)
70 2kwj_A Zinc finger protein DPF 99.0 9.8E-11 3.4E-15 113.0 3.0 55 1222-1276 51-108 (114)
71 3asl_A E3 ubiquitin-protein li 99.0 1.4E-10 4.7E-15 103.9 3.7 48 31-89 20-68 (70)
72 2k16_A Transcription initiatio 99.0 1.1E-10 3.8E-15 104.7 3.0 60 24-94 13-72 (75)
73 2ysm_A Myeloid/lymphoid or mix 99.0 1.5E-10 5E-15 110.7 3.9 59 1219-1277 44-105 (111)
74 3v43_A Histone acetyltransfera 99.0 1.7E-10 5.7E-15 111.0 4.1 56 1221-1276 53-112 (112)
75 3shb_A E3 ubiquitin-protein li 98.9 4.9E-10 1.7E-14 102.3 3.4 49 30-89 27-76 (77)
76 3uv5_A Transcription initiatio 98.9 1.4E-09 4.6E-14 118.1 7.0 89 1085-1184 149-237 (265)
77 2k16_A Transcription initiatio 98.9 6.5E-10 2.2E-14 99.7 2.9 53 1225-1277 17-69 (75)
78 3v43_A Histone acetyltransfera 98.9 1.1E-09 3.6E-14 105.5 4.1 49 31-89 63-111 (112)
79 3ask_A E3 ubiquitin-protein li 98.9 8.2E-10 2.8E-14 118.3 3.5 50 29-89 174-224 (226)
80 3aad_A Transcription initiatio 98.8 2.5E-09 8.7E-14 117.7 7.3 90 1084-1184 181-270 (292)
81 2kwj_A Zinc finger protein DPF 98.8 1.2E-09 4.1E-14 105.5 3.4 48 31-89 60-107 (114)
82 2r0y_A Chromatin structure-rem 98.8 2.6E-09 8.7E-14 118.9 5.4 88 1089-1187 179-266 (311)
83 4gne_A Histone-lysine N-methyl 98.8 2.5E-09 8.6E-14 103.1 4.3 50 24-89 10-61 (107)
84 2r10_A Chromatin structure-rem 98.8 3.6E-09 1.2E-13 119.7 6.1 88 1089-1187 229-316 (361)
85 2lbm_A Transcriptional regulat 98.8 1.6E-09 5.6E-14 109.0 2.1 54 26-89 60-116 (142)
86 1wen_A Inhibitor of growth fam 98.7 1.1E-08 3.8E-13 92.0 5.4 50 27-91 14-66 (71)
87 1weu_A Inhibitor of growth fam 98.6 3.3E-08 1.1E-12 93.0 6.7 49 28-91 35-86 (91)
88 2r10_A Chromatin structure-rem 98.6 1.8E-08 6.1E-13 114.1 5.9 96 1076-1183 81-178 (361)
89 4gne_A Histone-lysine N-methyl 98.6 1.6E-08 5.5E-13 97.5 4.0 48 1224-1276 13-62 (107)
90 2lv9_A Histone-lysine N-methyl 98.6 2.9E-08 1E-12 93.9 4.8 49 28-89 27-75 (98)
91 2ysm_A Myeloid/lymphoid or mix 98.6 2.2E-08 7.6E-13 95.6 3.7 54 24-88 2-55 (111)
92 2lv9_A Histone-lysine N-methyl 98.6 3.9E-08 1.3E-12 93.1 5.2 50 1227-1278 29-78 (98)
93 2vnf_A ING 4, P29ING4, inhibit 98.5 2.5E-08 8.6E-13 86.8 2.9 48 27-89 8-58 (60)
94 3c6w_A P28ING5, inhibitor of g 98.5 2.7E-08 9.3E-13 86.5 3.0 48 27-89 7-57 (59)
95 2r0y_A Chromatin structure-rem 98.5 3.9E-08 1.3E-12 109.5 4.7 97 1075-1183 30-128 (311)
96 3vxv_A Methyl-CPG-binding doma 98.5 6.5E-08 2.2E-12 86.9 5.1 49 229-277 3-54 (69)
97 3ql9_A Transcriptional regulat 98.5 1.2E-08 4E-13 101.4 0.1 52 26-89 54-110 (129)
98 2g6q_A Inhibitor of growth pro 98.5 3.5E-08 1.2E-12 86.6 3.1 48 27-89 9-59 (62)
99 1wen_A Inhibitor of growth fam 98.5 1.4E-07 4.7E-12 84.9 5.9 52 1223-1278 13-67 (71)
100 1we9_A PHD finger family prote 98.5 7.5E-08 2.6E-12 83.9 3.9 56 26-90 3-58 (64)
101 2jmi_A Protein YNG1, ING1 homo 98.4 4.6E-08 1.6E-12 91.9 2.1 48 27-89 24-75 (90)
102 1ub1_A MECP2, attachment regio 98.4 5.7E-07 1.9E-11 89.6 8.3 73 231-303 37-116 (133)
103 2vnf_A ING 4, P29ING4, inhibit 98.4 7.5E-08 2.6E-12 83.9 1.5 47 1226-1276 10-59 (60)
104 2ky8_A Methyl-CPG-binding doma 98.3 4.3E-07 1.5E-11 82.2 5.8 44 231-274 12-58 (72)
105 1weu_A Inhibitor of growth fam 98.3 4.9E-07 1.7E-11 85.1 5.8 50 1225-1278 35-87 (91)
106 2ri7_A Nucleosome-remodeling f 98.3 9.6E-08 3.3E-12 97.2 1.1 54 26-89 5-58 (174)
107 2lbm_A Transcriptional regulat 98.3 9.1E-08 3.1E-12 96.4 0.7 49 1225-1276 62-117 (142)
108 3c6w_A P28ING5, inhibitor of g 98.3 1.3E-07 4.4E-12 82.3 1.6 48 1225-1276 8-58 (59)
109 2jmi_A Protein YNG1, ING1 homo 98.3 1.8E-07 6.1E-12 87.9 2.0 47 1226-1276 26-76 (90)
110 2g6q_A Inhibitor of growth pro 98.3 1.9E-07 6.6E-12 82.0 1.7 48 1225-1276 10-60 (62)
111 1d9n_A Methyl-CPG-binding prot 98.3 5.5E-07 1.9E-11 82.2 4.6 43 231-273 10-55 (75)
112 1x4i_A Inhibitor of growth pro 98.2 2.3E-07 8E-12 83.2 1.3 48 27-89 4-54 (70)
113 3c2i_A Methyl-CPG-binding prot 98.2 8.6E-07 2.9E-11 84.4 4.9 54 222-275 9-70 (97)
114 1wep_A PHF8; structural genomi 98.2 7.6E-07 2.6E-11 80.9 3.8 57 24-90 7-63 (79)
115 2vpb_A Hpygo1, pygopus homolog 98.2 3.5E-07 1.2E-11 81.1 0.9 60 25-88 4-64 (65)
116 1wee_A PHD finger family prote 98.1 1.6E-06 5.3E-11 77.6 4.1 52 28-90 15-66 (72)
117 3ql9_A Transcriptional regulat 98.0 5E-07 1.7E-11 89.9 -1.4 50 1224-1276 55-111 (129)
118 2xb1_A Pygopus homolog 2, B-ce 98.0 1.7E-06 5.7E-11 83.0 2.2 57 30-90 4-61 (105)
119 1wew_A DNA-binding family prot 98.0 4.7E-06 1.6E-10 75.8 4.9 53 28-90 15-72 (78)
120 3o70_A PHD finger protein 13; 97.9 5.2E-06 1.8E-10 74.1 4.0 50 27-89 17-66 (68)
121 1wem_A Death associated transc 97.9 2.6E-06 8.7E-11 76.8 1.7 55 28-89 15-69 (76)
122 2rsd_A E3 SUMO-protein ligase 97.8 1.1E-05 3.7E-10 71.6 4.3 56 26-89 7-64 (68)
123 3lqh_A Histone-lysine N-methyl 97.8 3E-05 1E-09 81.0 7.8 89 1072-1182 74-162 (183)
124 3iu6_A Protein polybromo-1; PB 97.8 6.6E-05 2.3E-09 76.2 9.7 104 1072-1184 6-109 (147)
125 3kqi_A GRC5, PHD finger protei 97.8 6.3E-06 2.2E-10 74.3 1.9 52 28-89 9-60 (75)
126 3o70_A PHD finger protein 13; 97.8 1.2E-05 4.1E-10 71.8 3.3 50 1225-1276 18-67 (68)
127 1wil_A KIAA1045 protein; ring 97.7 7.9E-06 2.7E-10 76.0 1.9 63 25-89 11-75 (89)
128 1x4i_A Inhibitor of growth pro 97.7 8.9E-06 3E-10 73.0 1.8 48 1226-1277 6-56 (70)
129 2kgg_A Histone demethylase jar 97.7 6.7E-06 2.3E-10 69.5 0.7 48 31-88 4-52 (52)
130 3o7a_A PHD finger protein 13 v 97.5 3.6E-05 1.2E-09 65.0 3.0 47 30-89 5-51 (52)
131 1we9_A PHD finger family prote 97.5 3.3E-05 1.1E-09 67.2 2.7 53 1226-1278 6-60 (64)
132 3o7a_A PHD finger protein 13 v 97.5 3.6E-05 1.2E-09 65.0 2.3 50 1224-1275 2-51 (52)
133 1wee_A PHD finger family prote 97.4 4.6E-05 1.6E-09 68.2 2.4 52 1227-1279 17-69 (72)
134 3kv5_D JMJC domain-containing 97.4 3.7E-05 1.3E-09 90.5 1.9 52 28-89 36-87 (488)
135 2xb1_A Pygopus homolog 2, B-ce 97.3 4.6E-05 1.6E-09 73.1 0.9 53 1227-1279 4-64 (105)
136 1wem_A Death associated transc 97.2 5.7E-05 1.9E-09 68.0 0.6 51 1227-1278 17-72 (76)
137 2rsd_A E3 SUMO-protein ligase 97.2 9.8E-05 3.4E-09 65.5 2.0 49 1227-1277 11-66 (68)
138 1wew_A DNA-binding family prot 97.2 0.00015 5.2E-09 65.9 2.9 52 1226-1279 16-75 (78)
139 3lqh_A Histone-lysine N-methyl 97.1 0.00017 5.8E-09 75.4 2.7 55 30-89 3-62 (183)
140 1wep_A PHF8; structural genomi 97.0 0.00019 6.4E-09 65.3 2.0 51 1227-1278 13-65 (79)
141 3kv4_A PHD finger protein 8; e 97.0 9.1E-05 3.1E-09 86.4 -0.3 50 30-89 6-55 (447)
142 3pur_A Lysine-specific demethy 97.0 0.00022 7.6E-09 84.4 2.4 40 41-89 54-93 (528)
143 2vpb_A Hpygo1, pygopus homolog 96.9 0.00013 4.4E-09 64.8 -0.3 46 1227-1274 9-64 (65)
144 3kqi_A GRC5, PHD finger protei 96.7 0.00028 9.6E-09 63.6 0.4 51 1228-1279 12-64 (75)
145 2kgg_A Histone demethylase jar 96.6 0.00034 1.2E-08 59.1 0.1 47 1228-1274 4-52 (52)
146 1wil_A KIAA1045 protein; ring 96.6 0.00045 1.5E-08 64.5 0.5 52 1225-1277 14-77 (89)
147 4bbq_A Lysine-specific demethy 95.7 0.0027 9.1E-08 60.9 1.3 41 44-90 74-114 (117)
148 3pur_A Lysine-specific demethy 95.5 0.004 1.4E-07 74.0 1.9 41 1238-1278 55-96 (528)
149 3kv5_D JMJC domain-containing 95.4 0.0018 6.2E-08 76.4 -1.2 51 1227-1278 38-90 (488)
150 4bbq_A Lysine-specific demethy 95.3 0.0073 2.5E-07 57.9 2.8 40 1238-1277 72-115 (117)
151 3kv4_A PHD finger protein 8; e 93.2 0.007 2.4E-07 70.9 -2.9 51 1229-1279 7-59 (447)
152 3a1b_A DNA (cytosine-5)-methyl 93.0 0.016 5.6E-07 59.6 -0.2 53 29-89 79-133 (159)
153 2ku7_A MLL1 PHD3-CYP33 RRM chi 91.5 0.053 1.8E-06 51.6 1.2 42 45-89 2-43 (140)
154 2pv0_B DNA (cytosine-5)-methyl 90.4 0.036 1.2E-06 63.9 -1.1 53 29-89 93-147 (386)
155 2ct0_A Non-SMC element 1 homol 89.6 0.32 1.1E-05 44.2 4.6 38 24-64 10-47 (74)
156 2d8s_A Cellular modulator of i 89.2 0.17 5.7E-06 46.2 2.4 55 23-89 9-66 (80)
157 2ku7_A MLL1 PHD3-CYP33 RRM chi 87.9 0.2 6.7E-06 47.6 2.1 38 1240-1277 1-45 (140)
158 3rsn_A SET1/ASH2 histone methy 81.5 1.1 3.8E-05 47.0 4.3 48 35-91 10-60 (177)
159 1iym_A EL5; ring-H2 finger, ub 81.0 0.93 3.2E-05 37.0 2.8 49 27-89 3-51 (55)
160 3k1l_B Fancl; UBC, ring, RWD, 74.3 1.4 4.7E-05 50.8 2.6 34 28-61 307-344 (381)
161 2ect_A Ring finger protein 126 74.2 3.6 0.00012 35.8 4.8 49 26-89 12-60 (78)
162 3rsn_A SET1/ASH2 histone methy 73.1 2.7 9.2E-05 44.1 4.3 48 1228-1276 7-59 (177)
163 2ecm_A Ring finger and CHY zin 72.7 1.5 5.1E-05 35.6 1.9 48 28-89 4-51 (55)
164 2ep4_A Ring finger protein 24; 71.0 2.7 9.3E-05 36.3 3.2 48 27-89 13-60 (74)
165 2l0b_A E3 ubiquitin-protein li 69.9 1.9 6.4E-05 39.4 2.0 49 26-89 37-85 (91)
166 2kiz_A E3 ubiquitin-protein li 67.2 3.3 0.00011 35.3 2.9 49 26-89 11-59 (69)
167 3ng2_A RNF4, snurf, ring finge 66.6 1.6 5.5E-05 37.2 0.8 51 25-89 6-59 (71)
168 1v87_A Deltex protein 2; ring- 64.8 3.3 0.00011 38.7 2.6 52 29-89 25-90 (114)
169 2ea6_A Ring finger protein 4; 63.8 1.6 5.4E-05 36.8 0.3 37 26-62 12-51 (69)
170 1x4j_A Ring finger protein 38; 63.5 1.9 6.6E-05 37.5 0.8 49 26-89 20-68 (75)
171 2ecl_A Ring-box protein 2; RNF 63.0 4 0.00014 36.6 2.7 50 26-89 12-72 (81)
172 1iym_A EL5; ring-H2 finger, ub 62.9 3.8 0.00013 33.2 2.4 48 1225-1276 4-52 (55)
173 3a1b_A DNA (cytosine-5)-methyl 61.4 1.9 6.4E-05 44.6 0.3 49 1226-1277 79-135 (159)
174 2ect_A Ring finger protein 126 57.2 10 0.00035 33.0 4.3 52 1225-1280 14-65 (78)
175 2d8t_A Dactylidin, ring finger 54.2 6 0.00021 34.1 2.3 48 24-89 10-57 (71)
176 2d8s_A Cellular modulator of i 54.1 8.3 0.00028 35.1 3.2 54 1224-1279 13-70 (80)
177 2ct0_A Non-SMC element 1 homol 52.5 10 0.00035 34.4 3.5 52 1223-1278 12-63 (74)
178 2ct2_A Tripartite motif protei 52.1 14 0.00048 32.5 4.3 53 25-89 11-64 (88)
179 1x4j_A Ring finger protein 38; 51.0 2 7E-05 37.4 -1.3 50 1225-1278 22-71 (75)
180 2pv0_B DNA (cytosine-5)-methyl 50.4 2.2 7.6E-05 49.4 -1.4 49 1226-1277 93-149 (386)
181 2egp_A Tripartite motif-contai 49.7 16 0.00055 31.5 4.3 53 26-89 9-61 (79)
182 2cu8_A Cysteine-rich protein 2 49.5 11 0.00039 32.8 3.3 64 22-89 2-66 (76)
183 1vyx_A ORF K3, K3RING; zinc-bi 49.0 2.1 7.1E-05 37.1 -1.5 51 26-89 3-55 (60)
184 3dpl_R Ring-box protein 1; ubi 48.8 6.2 0.00021 37.7 1.6 48 28-89 36-97 (106)
185 2kiz_A E3 ubiquitin-protein li 48.6 3.5 0.00012 35.2 -0.2 48 1226-1277 14-61 (69)
186 2djb_A Polycomb group ring fin 48.4 13 0.00046 32.0 3.5 46 27-89 13-58 (72)
187 2ecv_A Tripartite motif-contai 48.4 13 0.00045 32.2 3.5 52 26-89 16-67 (85)
188 4a0k_B E3 ubiquitin-protein li 47.4 4.4 0.00015 39.6 0.3 47 29-89 48-108 (117)
189 2ecw_A Tripartite motif-contai 46.6 13 0.00045 32.2 3.3 52 26-89 16-67 (85)
190 3nw0_A Non-structural maintena 46.1 9 0.00031 41.4 2.5 31 29-62 180-210 (238)
191 2yur_A Retinoblastoma-binding 44.1 15 0.0005 32.1 3.1 49 26-89 12-60 (74)
192 2xeu_A Ring finger protein 4; 43.4 4.4 0.00015 33.6 -0.3 47 29-89 3-52 (64)
193 2d8y_A Eplin protein; LIM doma 43.0 27 0.00093 31.5 4.8 57 29-89 15-71 (91)
194 1v87_A Deltex protein 2; ring- 42.9 7.2 0.00025 36.4 1.0 53 1226-1278 25-93 (114)
195 2co8_A NEDD9 interacting prote 41.5 15 0.00052 32.8 2.9 59 27-89 13-73 (82)
196 2ecm_A Ring finger and CHY zin 39.5 5.7 0.0002 32.1 -0.2 47 1226-1276 5-52 (55)
197 3k1l_B Fancl; UBC, ring, RWD, 39.5 11 0.00037 43.6 1.9 50 1227-1276 309-370 (381)
198 2l0b_A E3 ubiquitin-protein li 38.8 7.2 0.00025 35.5 0.3 48 1225-1276 39-86 (91)
199 2ecl_A Ring-box protein 2; RNF 37.6 13 0.00046 33.1 1.9 48 1226-1277 15-74 (81)
200 1chc_A Equine herpes virus-1 r 36.8 11 0.00036 31.9 1.0 45 28-89 4-48 (68)
201 1vyx_A ORF K3, K3RING; zinc-bi 36.2 3.8 0.00013 35.5 -1.9 48 1226-1276 6-56 (60)
202 2egp_A Tripartite motif-contai 34.1 47 0.0016 28.6 4.7 52 1225-1279 11-65 (79)
203 1dx8_A Rubredoxin; electron tr 32.4 30 0.001 31.3 3.2 19 1260-1279 34-52 (70)
204 6rxn_A Rubredoxin; electron tr 32.4 24 0.00082 29.7 2.4 18 1259-1277 23-40 (46)
205 1weq_A PHD finger protein 7; s 32.3 52 0.0018 31.0 4.9 37 1239-1278 44-81 (85)
206 2kn9_A Rubredoxin; metalloprot 31.8 34 0.0012 32.0 3.5 19 1259-1278 53-71 (81)
207 1e8j_A Rubredoxin; iron-sulfur 31.8 43 0.0015 28.7 3.9 19 1259-1278 29-47 (52)
208 2ecy_A TNF receptor-associated 31.5 28 0.00097 29.3 2.8 46 27-89 13-58 (66)
209 3nw0_A Non-structural maintena 31.3 13 0.00043 40.3 0.7 46 1227-1276 181-226 (238)
210 2ysl_A Tripartite motif-contai 30.4 20 0.00069 30.5 1.7 49 26-89 17-65 (73)
211 2ep4_A Ring finger protein 24; 30.2 9.4 0.00032 32.9 -0.4 48 1226-1277 15-62 (74)
212 2lq6_A Bromodomain-containing 30.1 24 0.00083 32.8 2.3 37 1218-1256 10-48 (87)
213 2ecj_A Tripartite motif-contai 29.7 25 0.00085 28.5 2.1 45 1225-1273 14-58 (58)
214 2dar_A PDZ and LIM domain prot 29.2 35 0.0012 30.7 3.2 57 28-89 24-80 (90)
215 2fiy_A Protein FDHE homolog; F 28.9 28 0.00097 39.1 3.0 43 1224-1278 180-233 (309)
216 2ysj_A Tripartite motif-contai 28.3 27 0.00094 29.1 2.2 45 20-87 11-63 (63)
217 4rxn_A Rubredoxin; electron tr 27.7 26 0.00089 30.4 1.9 17 1260-1277 30-46 (54)
218 2lq6_A Bromodomain-containing 27.5 22 0.00077 33.0 1.6 31 29-61 17-49 (87)
219 2ecy_A TNF receptor-associated 27.4 19 0.00067 30.3 1.1 48 1225-1278 14-61 (66)
220 1e4u_A Transcriptional repress 26.7 25 0.00085 31.7 1.7 56 20-89 2-58 (78)
221 3l11_A E3 ubiquitin-protein li 26.7 27 0.00092 32.7 2.0 48 25-89 11-58 (115)
222 2ysl_A Tripartite motif-contai 26.5 25 0.00085 29.9 1.6 50 1225-1278 19-68 (73)
223 4ap4_A E3 ubiquitin ligase RNF 26.4 7.9 0.00027 36.3 -1.7 49 27-89 70-121 (133)
224 1yk4_A Rubredoxin, RD; electro 26.4 40 0.0014 28.9 2.8 17 1260-1277 29-45 (52)
225 1x64_A Alpha-actinin-2 associa 26.0 84 0.0029 28.2 5.1 58 27-89 23-80 (89)
226 2l4z_A DNA endonuclease RBBP8, 25.8 74 0.0025 30.7 5.0 30 29-61 61-90 (123)
227 2ckl_B Ubiquitin ligase protei 25.2 13 0.00044 37.1 -0.5 46 28-89 53-98 (165)
228 2ecn_A Ring finger protein 141 25.2 27 0.00091 29.7 1.6 49 20-87 6-54 (70)
229 1x4l_A Skeletal muscle LIM-pro 24.7 54 0.0018 28.1 3.4 58 29-89 5-64 (72)
230 2csy_A Zinc finger protein 183 24.6 25 0.00087 30.8 1.3 44 28-89 14-57 (81)
231 2v3b_B Rubredoxin 2, rubredoxi 24.1 45 0.0015 28.9 2.7 18 1260-1278 30-47 (55)
232 2d8t_A Dactylidin, ring finger 24.0 26 0.00088 30.1 1.2 48 1224-1278 13-60 (71)
233 4b2u_A S67; toxin, ICK; NMR {S 23.4 23 0.00078 27.9 0.7 17 77-93 14-30 (36)
234 3lrq_A E3 ubiquitin-protein li 23.4 18 0.00062 33.4 0.2 46 28-89 21-66 (100)
235 2ecv_A Tripartite motif-contai 22.9 28 0.00095 30.1 1.3 52 1225-1279 18-71 (85)
236 3l11_A E3 ubiquitin-protein li 22.7 36 0.0012 31.8 2.1 47 1226-1278 15-61 (115)
237 1s24_A Rubredoxin 2; electron 22.6 41 0.0014 31.8 2.3 19 1259-1278 61-79 (87)
238 2lk0_A RNA-binding protein 5; 22.2 21 0.00071 27.7 0.3 11 79-89 3-13 (32)
239 2ckl_A Polycomb group ring fin 22.2 30 0.001 32.1 1.4 46 27-89 13-58 (108)
240 3dpl_R Ring-box protein 1; ubi 22.0 20 0.0007 34.2 0.2 32 1242-1277 68-99 (106)
241 4ayc_A E3 ubiquitin-protein li 21.3 23 0.00079 34.4 0.5 44 28-89 52-95 (138)
242 4a0k_B E3 ubiquitin-protein li 21.2 21 0.00073 34.8 0.2 28 1245-1276 82-109 (117)
243 2a20_A Regulating synaptic mem 21.1 35 0.0012 30.4 1.5 54 26-89 6-59 (62)
244 3ztg_A E3 ubiquitin-protein li 20.3 32 0.0011 30.7 1.1 49 26-89 10-58 (92)
245 1i3j_A I-TEVI, intron-associat 20.1 30 0.001 34.1 0.9 20 257-276 79-98 (116)
No 1
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=99.94 E-value=1.8e-27 Score=238.31 Aligned_cols=133 Identities=24% Similarity=0.494 Sum_probs=108.8
Q ss_pred CcCEEeccEEEEEeceecCC-CCCCCCCceecCCeEE---EeEc--CCCCeEEEEEEeeCCCCCCeEEEEeecCCCCCcC
Q 047726 365 GLPVQFEDFFILSLGHVDGR-PSYHNVNVIYPVGYTS---CWHD--KITGSLFICEVLDGGDSGPVFKVTRCSCSALPIP 438 (1297)
Q Consensus 365 g~P~~vg~l~v~SLGeI~~~-p~FHse~~IyPVGY~s---~~~~--~~~~~~y~C~IlDGG~~GP~F~I~~~~~~~~pi~ 438 (1297)
-||+++|+|+|+|||+|+++ ++||+++|||||||++ ||+. ++.+|.|+|+|+|+|+ +|+|+|++.+
T Consensus 4 ~lP~~~g~l~v~slG~i~~~~~~fh~~~~IyPvGy~~~R~y~s~~dp~~~~~Y~c~I~d~~~-~P~F~V~~e~------- 75 (146)
T 2wzo_A 4 VFPIGLGGLTVYSLGEIITDRPGFHDESAIYPVGYCSTRIYASMKCPDQKCLYTCQIKDGGV-QPQFEIVPED------- 75 (146)
T ss_dssp CCCEEETTEEEEEEEECCCSSGGGBCSSCBCCEEEEEEEEEECSSCTTSEEEEEEEEEECSS-SEEEEEEETT-------
T ss_pred eecEEECCEEEEEeeeEccCCCCccCCCceeCCCEEEEEEEecccCCCCeEEEEEEEEECCC-cceeEEEecC-------
Confidence 48999999999999999987 9999999999999999 8885 4555999999999986 7999999544
Q ss_pred CCCcccccCCcccccCCccccCCCccccCCCCCcccchhhhccCCCCCCccccccccCcCCCCCCCCCCCceEEecCCch
Q 047726 439 DGSTILFRPNFVQCSGRDHEANGDFTSYSKDYDSDVNIQMILSDPCLPVDNDILTCLGSCSNKSCDDDIGEISVEDRSLS 518 (1297)
Q Consensus 439 ~~Sti~~~~n~~~~~~q~~~~~~~~~~~~~d~d~~~n~~~ll~d~~~~~~dd~~~c~~~~~~~~~~~~ige~~~e~~s~~ 518 (1297)
+ -+..++|.|+.
T Consensus 76 -------------------------------------------------------------------~-~~~~~~g~Sp~ 87 (146)
T 2wzo_A 76 -------------------------------------------------------------------D-PQNAIVSSSAD 87 (146)
T ss_dssp -------------------------------------------------------------------C-GGGCEEESSHH
T ss_pred -------------------------------------------------------------------C-CCceEEeCChH
Confidence 1 13467899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceeeeccccccccccccccchhhhhhhhhhhhhhccCCCCc-cccCcccCCcchhhhH
Q 047726 519 SAWRRLSQKFVDACFEICKQKGVLKFSCKHIENSREFANWDMVDEKEKMRFTSLNKFCGSSVS-VSIPSEFRGDNELDML 597 (1297)
Q Consensus 519 s~W~~v~~k~~~~c~~~~k~~g~l~~~c~h~~~~~~~~~~~~~~~~~~~~~~~~~~fc~~~~p-~~i~~~~~~~~~~~~~ 597 (1297)
.+|++|.+++ .+++ |. .+ | ..+.
T Consensus 88 ~~W~~il~~i----~~~~---~~--~~-----------------------------------~~~~~s------------ 111 (146)
T 2wzo_A 88 ACHAELLRTI----STTM---GK--LM-----------------------------------PNLLPA------------ 111 (146)
T ss_dssp HHHHHHHHHH----HHHH---TC--CC-----------------------------------TTCCCC------------
T ss_pred HHHHHHHHHH----HHHh---cC--cC-----------------------------------CCCCCC------------
Confidence 9995555554 4443 21 11 1 1345
Q ss_pred HHHHhhhcccccccCCHHHHHHHHHhCCCCcccccchhhc
Q 047726 598 ADVLLKWLDQDRFGLEAEFVQEVIEQLPGVKDCSQYEFLI 637 (1297)
Q Consensus 598 ~~~l~~wl~qDrfGLd~~fVqeiiE~LPgv~~c~~Y~fl~ 637 (1297)
|+|.|||+.+.|+++||+|||++.|.+|+|+.
T Consensus 112 --------G~~~FGl~~p~V~~lie~Lpg~~~C~~Y~~~~ 143 (146)
T 2wzo_A 112 --------GADFFGFSHPAIHNLIQSCPGARKCINYQWVK 143 (146)
T ss_dssp --------HHHHHTTTSHHHHHHHTTSTTGGGCTTCCCCC
T ss_pred --------hhheecCCCHHHHHHHHhCCCchhcccCCcEE
Confidence 89999999999999999999999999999874
No 2
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.47 E-value=5.4e-14 Score=138.61 Aligned_cols=105 Identities=21% Similarity=0.330 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
..+.++|..||+.+..++.+++|..|++. .++|+|..+|++||||+||..|+..|.|. +...|..||++
T Consensus 20 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~----------~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~-~~~~f~~D~~l 88 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCEDSEPFRQPVDL----------LEYPDYRDIIDTPMDFATVRETLEAGNYE-SPMELCKDVRL 88 (135)
T ss_dssp STHHHHHHHHHHHHHHSGGGGGGSSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCCh----------hhCCCHHHHhCCCcCHHHHHHHHhCCCCC-CHHHHHHHHHH
Confidence 56999999999999999999999999764 45899999999999999999999999999 88999999999
Q ss_pred HHhhhhhccCC-CchHHHHHHHhhhhhhhhhhhhhHh
Q 047726 1152 FWNNVRTAFGD-QPDFVDLAEKLSRNFESLYENEIVT 1187 (1297)
Q Consensus 1152 VWsN~~Tyn~d-g~dVv~LAEsLSq~FESrYekqvL~ 1187 (1297)
+|+||.+||.. ++.++.+|..|...|+..+.+.+-.
T Consensus 89 i~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~ 125 (135)
T 3mb3_A 89 IFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSD 125 (135)
T ss_dssp HHHHHHHHSCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 8999999999999999998875544
No 3
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.47 E-value=4e-14 Score=136.14 Aligned_cols=101 Identities=18% Similarity=0.325 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
+...++|..||..+..++.+++|..|++. ..+|+|..+|++||||+||..|+..|.|. +...|..||++
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~----------~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~-~~~~f~~D~~l 83 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDE----------SYAPNYYQIIKAPMDISSMEKKLNGGLYC-TKEEFVNDMKT 83 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCCh----------hhccChHHHcCCCCCHHHHHHHHcCCCCC-CHHHHHHHHHH
Confidence 44899999999999999999999999765 25899999999999999999999999998 88999999999
Q ss_pred HHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1152 FWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1152 VWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
+|+||.+||+.++.++.+|..|...|+..+.+
T Consensus 84 i~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 84 MFRNCRKYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999988764
No 4
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.47 E-value=4.7e-14 Score=138.81 Aligned_cols=102 Identities=24% Similarity=0.348 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHhCCC---chhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHH
Q 047726 1073 IIMKQCRIVLRQAAAADD---EKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDV 1149 (1297)
Q Consensus 1073 limKRCr~VLr~l~ss~~---s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDV 1149 (1297)
..+++|..||..++.++. +++|..|| |+...++++|..+|++||||+||..|+..|.|. +...|.+||
T Consensus 22 ~~l~~c~~il~~L~~~~~~~~a~~F~~PV--------d~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~Dv 92 (130)
T 2ouo_A 22 EQLKCCSGILKEMFAKKHAAYAWPFYKPV--------DVEALGLHDYCDIIKHPMDMSTIKSKLEAREYR-DAQEFGADV 92 (130)
T ss_dssp HHHHHHHHHHHHHTSGGGHHHHGGGSSCC--------CTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcchhHHHhcCCC--------ChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCC-CHHHHHHHH
Confidence 467999999999987664 45565554 446668999999999999999999999999998 889999999
Q ss_pred HHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1150 REFWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1150 reVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
+++|+||.+||..++.++.+|..|...|+.+|.+
T Consensus 93 ~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~ 126 (130)
T 2ouo_A 93 RLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAK 126 (130)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875
No 5
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.46 E-value=9.1e-14 Score=137.54 Aligned_cols=102 Identities=21% Similarity=0.318 Sum_probs=92.8
Q ss_pred chHHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcc--cccCCCchhHHH
Q 047726 1070 ISSIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAV--GAYDGSHDSFLQ 1147 (1297)
Q Consensus 1070 ~SdlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAa--GaY~GS~e~FaE 1147 (1297)
.+...+++|+.||..++.++.+++|..|++. ++++|..+|++||||+||+.||.. |.|. +...|.+
T Consensus 17 m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~-----------~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~-s~~ef~~ 84 (135)
T 2yyn_A 17 LTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-----------TVPDYYKIIKNPMDLSTIKKRLQEDYSMYS-KPEDFVA 84 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT-----------TSTTHHHHCSSCCCHHHHHHHHHSSSCCCS-SHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCccchhhcCCCcc-----------cCCCHHHHcCCCCCHHHHHHHHhccccCCC-CHHHHHH
Confidence 4567889999999999999999999888642 489999999999999999999997 5887 8899999
Q ss_pred HHHHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1148 DVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1148 DVreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
||+++|+||.+||..++.++.+|..|...|+.++.+
T Consensus 85 Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~ 120 (135)
T 2yyn_A 85 DFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKN 120 (135)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988764
No 6
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.45 E-value=1.1e-13 Score=132.64 Aligned_cols=102 Identities=16% Similarity=0.207 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHH
Q 047726 1071 SSIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVR 1150 (1297)
Q Consensus 1071 SdlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVr 1150 (1297)
++.+.++|+.||..+..++.+.+|..|++. .++|+|..+|++||||+||..|+..|.|. +...|.+|++
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~~f~~Dv~ 73 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKK----------SEAPDYYEVIRFPIDLKTMTERLRSRYYV-TRKLFVADLQ 73 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCc----------ccccCHHHHccCCcCHHHHHHHHcCCCCc-CHHHHHHHHH
Confidence 467899999999999999999999999764 25899999999999999999999999998 8889999999
Q ss_pred HHHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1151 EFWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1151 eVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
++|+||.+||+.++.++.+|..|.+.|+..+.+
T Consensus 74 li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 106 (112)
T 3d7c_A 74 RVIANCREYNPPDSEYCRCASALEKFFYFKLKE 106 (112)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988774
No 7
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.45 E-value=1.3e-13 Score=132.73 Aligned_cols=101 Identities=24% Similarity=0.408 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
...++.|+.||..+..++.+++|..|++. ..+|+|..+|++||||+||..|+..|.|. +...|..|+++
T Consensus 12 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~----------~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~-~~~~f~~D~~l 80 (117)
T 3g0l_A 12 SKDLALCSMILTEMETHEDAWPFLLPVNL----------KLVPGYKKVIKKPMDFSTIREKLSSGQYP-NLETFALDVRL 80 (117)
T ss_dssp TTHHHHHHHHHHHHHTSTTCGGGSSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCcCCh----------hhcCChHHHcCCCCCHHHHHHHHhCCCCC-CHHHHHHHHHH
Confidence 35789999999999999999999999764 23899999999999999999999999999 88899999999
Q ss_pred HHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1152 FWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1152 VWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
+|+||.+||+.++.++.+|..|...|+..|.+
T Consensus 81 i~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 112 (117)
T 3g0l_A 81 VFDNCETFNEDDSDIGRAGHNMRKYFEKKWTD 112 (117)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999875
No 8
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.43 E-value=2.4e-13 Score=138.89 Aligned_cols=110 Identities=12% Similarity=0.162 Sum_probs=97.0
Q ss_pred cchHHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHH
Q 047726 1069 SISSIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQD 1148 (1297)
Q Consensus 1069 s~SdlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaED 1148 (1297)
+......+.|+.||..++.++.+.+|..||+. ...++|+|..+|++||||+||..||..+.|. +...|..|
T Consensus 17 p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~--------~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~-s~~ef~~D 87 (166)
T 3fkm_X 17 QGNKQWYLLANQLILSLSKYEGGHIFEKLVDA--------KKQNCPDYYDVIKNPMSFSCIKTKLKKGQYA-YPSEFVKD 87 (166)
T ss_dssp CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-------------CCCGGGCCSSCCCHHHHHHHHHHTCCC-SHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCChhhcCCCCh--------hhccCCCHHHhcCCCCCHHHHHHHHcCCCCC-CHHHHHHH
Confidence 34577899999999999999999988888754 4456899999999999999999999999999 88999999
Q ss_pred HHHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhhhhHh
Q 047726 1149 VREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYENEIVT 1187 (1297)
Q Consensus 1149 VreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYekqvL~ 1187 (1297)
|+++|+||.+||..++.++.+|..|...|+..+.+..+.
T Consensus 88 v~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~~~ 126 (166)
T 3fkm_X 88 VQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMGYN 126 (166)
T ss_dssp HHHHHHHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcccc
Confidence 999999999999999999999999999999999876553
No 9
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.42 E-value=3.5e-13 Score=132.13 Aligned_cols=103 Identities=19% Similarity=0.183 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
..+-..|+.||+.+..++.+++|..||+. ...++++|..+|++||||+||..|+..|.|. +...|.+|+++
T Consensus 20 ~~l~~~~~~il~~L~~~~~a~~F~~PVd~--------~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D~~l 90 (127)
T 2oss_A 20 NQLQYLLRVVLKTLWKHQFAWPFQQPVDA--------VKLNLPDYYKIIKTPMDMGTIKKRLENNYYW-NAQECIQDFNT 90 (127)
T ss_dssp HHHHHHHHTHHHHHHTSTTCGGGSSCCCT--------TTTTCTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCCCCh--------hhccCccHHHHcCCCCCHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence 55677788999999999998888888764 4457999999999999999999999999998 78889999999
Q ss_pred HHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1152 FWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1152 VWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
+|+||.+||..++.++.+|..|.+.|+..+.+
T Consensus 91 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~ 122 (127)
T 2oss_A 91 MFTNCYIYNKPGDDIVLMAEALEKLFLQKINE 122 (127)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988764
No 10
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.42 E-value=7.7e-14 Score=134.87 Aligned_cols=103 Identities=24% Similarity=0.349 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHhCCC---chhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADD---EKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQD 1148 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~---s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaED 1148 (1297)
...+++|..||+.++.++. +++|..|+ |+...|+|+|..+|++||||+||..|+..|.|. +...|..|
T Consensus 8 ~~~l~~c~~il~~l~~~~~~~~a~~F~~pv--------d~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~-~~~~f~~D 78 (120)
T 3jvl_A 8 SEQLKCCSGILKEMFAKKHAAYAWPFYKPV--------DVEALGLHDYCDIIKHPMDMSTIKSKLESREYR-DAQEFGAD 78 (120)
T ss_dssp CHHHHHHHHHHHHHTSGGGHHHHGGGSSCC--------CHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCccccchhcCCC--------CchhcCCCCHHHHcCCCCCHHHHHHHHccCCCC-CHHHHHHH
Confidence 4578999999999987776 56666665 456678999999999999999999999999998 88999999
Q ss_pred HHHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1149 VREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1149 VreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
|+++|+||.+||..++.++.+|..|...|+..+.+
T Consensus 79 ~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 113 (120)
T 3jvl_A 79 VRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAK 113 (120)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998875
No 11
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.41 E-value=3.1e-13 Score=131.40 Aligned_cols=98 Identities=18% Similarity=0.358 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHh
Q 047726 1075 MKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWN 1154 (1297)
Q Consensus 1075 mKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWs 1154 (1297)
++.|+.||+.+..++.+++|..|++. .++|+|..+|++||||+||..|+..|.|. +...|.+|++++|+
T Consensus 15 ~~~~~~il~~l~~~~~a~~F~~pvd~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~li~~ 83 (121)
T 1e6i_A 15 DAAIQNILTELQNHAAAWPFLQPVNK----------EEVPDYYDFIKEPMDLSTMEIKLESNKYQ-KMEDFIYDARLVFN 83 (121)
T ss_dssp HHHHHHHHHHHHHSTTCGGGSSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchhhCCCCCh----------hhCcCHHHHcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHH
Confidence 57899999999999999999999764 25899999999999999999999999998 88899999999999
Q ss_pred hhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1155 NVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1155 N~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
||.+||+.++.++.+|..|.+.|+.++.+
T Consensus 84 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~ 112 (121)
T 1e6i_A 84 NCRMYNGENTSYYKYANRLEKFFNNKVKE 112 (121)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764
No 12
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.41 E-value=2.9e-13 Score=131.31 Aligned_cols=105 Identities=15% Similarity=0.195 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
..+.+.|..||+.+...+.+.+|..|++. .++|+|..+|++||||+||..|+..|.|. +...|..|+++
T Consensus 7 ~~l~~~l~~il~~L~~~~~~~~F~~PVd~----------~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~-s~~ef~~Dv~L 75 (117)
T 2i7k_A 7 TPLQEALNQLMRQLQRKDPSAFFSFPVTD----------FIAPGYSMIIKHPMDFSTMKEKIKNNDYQ-SIEELKDNFKL 75 (117)
T ss_dssp HHHHHHHHHHHHHHHTSSGGGTSSSCCCT----------TTSSSHHHHCSCCCCHHHHHHHHTTTSCC-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccHHhcCCCCc----------cccCCHHHHhCCCCCHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence 34678999999999999999999988753 35899999999999999999999999999 88899999999
Q ss_pred HHhhhhhccCCCchHHHHHHHhhhhhhhhhhhhhHh
Q 047726 1152 FWNNVRTAFGDQPDFVDLAEKLSRNFESLYENEIVT 1187 (1297)
Q Consensus 1152 VWsN~~Tyn~dg~dVv~LAEsLSq~FESrYekqvL~ 1187 (1297)
+|+||.+||+.++.++.+|..|.+.|+..+..+++.
T Consensus 76 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 111 (117)
T 2i7k_A 76 MCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERLE 111 (117)
T ss_dssp HHHHHHHTSCSSSSHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998877663
No 13
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.41 E-value=3.2e-13 Score=131.42 Aligned_cols=105 Identities=22% Similarity=0.346 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
+.+.++|+.||..+..++.+++|..|++. .++|+|..+|++||||+||..|+..|.|. +...|..|+++
T Consensus 9 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~----------~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~-~~~~f~~D~~l 77 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCEDSEPFRQPVDL----------VEYPDYRDIIDTPMDFGTVRETLDAGNYD-SPLEFCKDIRL 77 (123)
T ss_dssp -CHHHHHHHHHHHHHTSGGGGGGSSCCCT----------TTCTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCCCCh----------hhcCCHHHHcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHH
Confidence 55899999999999999999999999765 25899999999999999999999999998 88899999999
Q ss_pred HHhhhhhccCC-CchHHHHHHHhhhhhhhhhhhhhHh
Q 047726 1152 FWNNVRTAFGD-QPDFVDLAEKLSRNFESLYENEIVT 1187 (1297)
Q Consensus 1152 VWsN~~Tyn~d-g~dVv~LAEsLSq~FESrYekqvL~ 1187 (1297)
+|+||.+||.. ++.++.+|..|...|+..+.+..-.
T Consensus 78 i~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~ 114 (123)
T 3q2e_A 78 IFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKISSD 114 (123)
T ss_dssp HHHHHHHHSCCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999985 8999999999999999998875443
No 14
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.3e-13 Score=130.63 Aligned_cols=103 Identities=19% Similarity=0.248 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHHHhCC------CchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchh
Q 047726 1071 SSIIMKQCRIVLRQAAAAD------DEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDS 1144 (1297)
Q Consensus 1071 SdlimKRCr~VLr~l~ss~------~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~ 1144 (1297)
++.+.++|+.||+.++.+. .+++|..|++. .++++|..+|++||||+||..|+..+.|. +...
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~~ 79 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSR----------KELPEYYELIRKPVDFKKIKERIRNHKYR-SLGD 79 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCT----------TTSCHHHHHCSSCCCHHHHHHHHTTTCCC-SHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCc----------ccCCCHHHHcCCCCCHHHHHHHHhCCCCC-CHHH
Confidence 4678999999999999876 35667776542 36899999999999999999999999998 8889
Q ss_pred HHHHHHHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhhh
Q 047726 1145 FLQDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYENE 1184 (1297)
Q Consensus 1145 FaEDVreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYekq 1184 (1297)
|.+|++++|+||.+||..++.++.+|..|.+.|+..+++.
T Consensus 80 f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 80 LEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999987753
No 15
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.39 E-value=4.8e-13 Score=135.25 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
..+...|+.||..+..++.+++|..||+. ...++|+|..+|++||||+||..||..+.|. +...|..|+++
T Consensus 31 ~~l~~~~~~il~~l~~~~~a~~F~~PVd~--------~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~-s~~ef~~Dv~L 101 (154)
T 4alg_A 31 NQLQYLHKVVMKALWKHQFAWPFRQPVDA--------VKLGLPDYHKIIKQPMDMGTIKRRLENNYYW-AASECMQDFNT 101 (154)
T ss_dssp HHHHHHHHTHHHHHHTSTTCGGGSSCCCT--------TTTTCTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCchhhcCCCCh--------hhccCCCHHHHcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHH
Confidence 56777889999999999999999888765 3446899999999999999999999999998 88899999999
Q ss_pred HHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1152 FWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1152 VWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
+|+||.+||..++.++.+|..|...|+..+.+
T Consensus 102 if~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~ 133 (154)
T 4alg_A 102 MFTNCYIYNKPTDDIVLMAQTLEKIFLQKVAS 133 (154)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998875
No 16
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.37 E-value=6.3e-13 Score=130.51 Aligned_cols=103 Identities=18% Similarity=0.229 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHHHHhCC-------CchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCch
Q 047726 1071 SSIIMKQCRIVLRQAAAAD-------DEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHD 1143 (1297)
Q Consensus 1071 SdlimKRCr~VLr~l~ss~-------~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e 1143 (1297)
++.+.++|+.||+.++... .+.+|..|++. .++|+|..+|++||||+||..|+..|.|. +..
T Consensus 9 ~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~ 77 (129)
T 2grc_A 9 PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR----------KELPEYYELIRKPVDFKKIKERIRNHKYR-SLN 77 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCT----------TTCHHHHHHCSSCCCHHHHHHHHHTTCCC-SHH
T ss_pred cHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCc----------ccCCCHHHHcCCCCCHHHHHHHHhcCCCC-CHH
Confidence 4678999999999999875 35677776442 46899999999999999999999999998 889
Q ss_pred hHHHHHHHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhhh
Q 047726 1144 SFLQDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYENE 1184 (1297)
Q Consensus 1144 ~FaEDVreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYekq 1184 (1297)
.|..|++++|+||.+||..++.++.+|..|.+.|+..+.+.
T Consensus 78 ~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 118 (129)
T 2grc_A 78 DLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKI 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999988753
No 17
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.36 E-value=7.2e-13 Score=127.94 Aligned_cols=106 Identities=18% Similarity=0.202 Sum_probs=94.7
Q ss_pred chHHHHHHHHHHHHHHHh-CCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHH
Q 047726 1070 ISSIIMKQCRIVLRQAAA-ADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQD 1148 (1297)
Q Consensus 1070 ~SdlimKRCr~VLr~l~s-s~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaED 1148 (1297)
..+.+.+.|..+|..++. ++.+.+|..||+. ...++|+|..+|++||||+||..|+..|.|. +...|..|
T Consensus 8 ~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~--------~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~-~~~~f~~D 78 (119)
T 3p1f_A 8 KPEELRQALMPTLEALYRQDPESLPFRQPVDP--------QLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQ-EPWQYVDD 78 (119)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCH--------HHHTCTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCchhcCCCCc--------hhccCCCHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHH
Confidence 357899999999999987 5677788887654 3346899999999999999999999999998 88999999
Q ss_pred HHHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhhh
Q 047726 1149 VREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYENE 1184 (1297)
Q Consensus 1149 VreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYekq 1184 (1297)
++++|+||.+||+.++.++.+|..|...|+..+.+.
T Consensus 79 ~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 114 (119)
T 3p1f_A 79 VWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPV 114 (119)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888753
No 18
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.35 E-value=2.1e-12 Score=132.81 Aligned_cols=103 Identities=20% Similarity=0.315 Sum_probs=94.2
Q ss_pred cchHHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcc--cccCCCchhHH
Q 047726 1069 SISSIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAV--GAYDGSHDSFL 1146 (1297)
Q Consensus 1069 s~SdlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAa--GaY~GS~e~Fa 1146 (1297)
..+....++|+.||..++.++.+.+|..|++. ++++|..+|++||||+||+.|+.. |.|. +...|.
T Consensus 77 ~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-----------~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~-s~~ef~ 144 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-----------TVPDYYKIIKNPMDLSTIKKRLQEDYSMYS-KPEDFV 144 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT-----------TSTTHHHHCSSCCCHHHHHHHHHSTTCSCC-SHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchhhhhhcccccc-----------CCCchhhhcCCCCCHHHHHHHHHhcCCCCC-CHHHHH
Confidence 44577899999999999999999999988642 389999999999999999999987 7888 888999
Q ss_pred HHHHHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1147 QDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1147 EDVreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
+||++||+|+.+||..++.++.+|..|...|+..+++
T Consensus 145 ~Dv~li~~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~ 181 (184)
T 3o36_A 145 ADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKN 181 (184)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998875
No 19
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=9.3e-13 Score=128.20 Aligned_cols=101 Identities=19% Similarity=0.194 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
.-+...|+.||..+..++.+++|..|++. .++|+|..+|++||||+||..|+..|.|. +...|..|+++
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D~~l 74 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPL----------SEVPDYLDHIKKPMDFFTMKQNLEAYRYL-NFDDFEEDFNL 74 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCT----------TTCTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCccHhhCCcCCc----------cccCCHHHHcCCCcCHHHHHHHHhcCCCC-CHHHHHHHHHH
Confidence 34568999999999999988888888764 25899999999999999999999999999 88999999999
Q ss_pred HHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1152 FWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1152 VWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
+|+||.+||..++.++.+|..|.+.|+..+..
T Consensus 75 i~~Na~~yN~~~s~~~~~A~~L~~~~~~~l~~ 106 (121)
T 2d9e_A 75 IVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQ 106 (121)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988764
No 20
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.34 E-value=4.8e-13 Score=116.57 Aligned_cols=55 Identities=25% Similarity=0.715 Sum_probs=48.2
Q ss_pred CcccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccccCCcc
Q 047726 25 SSETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKNGAK 93 (1297)
Q Consensus 25 ~~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~g~k 93 (1297)
...++++|.+|+. +|+||+||+|+++||+.|++ ||+.. +|.++|||+.|+....|
T Consensus 5 ~d~~~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~------ppl~~----~p~g~W~C~~C~~~~~k 59 (61)
T 1mm2_A 5 SDHHMEFCRVCKD----GGELLCCDTCPSSYHIHCLN------PPLPE----IPNGEWLCPRCTCPALK 59 (61)
T ss_dssp SCSSCSSCTTTCC----CSSCBCCSSSCCCBCSSSSS------SCCSS----CCSSCCCCTTTTTTCCT
T ss_pred ccCCCCcCCCCCC----CCCEEEcCCCCHHHcccccC------CCcCc----CCCCccCChhhcCchhc
Confidence 3566899999998 78999999999999999999 88877 88899999999874433
No 21
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.33 E-value=7.7e-13 Score=127.37 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHhCCC------chhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhH
Q 047726 1072 SIIMKQCRIVLRQAAAADD------EKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSF 1145 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~------s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~F 1145 (1297)
...+++|+.|++.+..... +.+|..|++ ..++|+|..+|++||||+||..|+..|.|. +...|
T Consensus 4 ~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~----------~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~-s~~~f 72 (116)
T 3iu5_A 4 VDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPK----------RRNQPDYYEVVSQPIDLMKIQQKLKMEEYD-DVNLL 72 (116)
T ss_dssp CCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCC----------GGGCHHHHHHCSSCCCHHHHHHHHHTTCCC-SHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCC----------cccCCCHHHHhCCCCCHHHHHHHHHcCCCC-CHHHH
Confidence 4578999999999997743 556666533 357899999999999999999999999998 88899
Q ss_pred HHHHHHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1146 LQDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1146 aEDVreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
..|++++|+||.+||+.++.++..|..|.+.|+..+++
T Consensus 73 ~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 110 (116)
T 3iu5_A 73 TADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNE 110 (116)
T ss_dssp HHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988775
No 22
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.33 E-value=4.1e-13 Score=112.42 Aligned_cols=50 Identities=42% Similarity=1.184 Sum_probs=46.6
Q ss_pred cccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCccc
Q 047726 1228 ICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1228 ~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~ 1277 (1297)
.|.+|++..+++.||+||.|+++||++|+.|+|.++|+|+|||+.|...+
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~t 51 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPAT 51 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccccC
Confidence 59999988888899999999999999999999999999999999998653
No 23
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=5.5e-13 Score=114.12 Aligned_cols=55 Identities=31% Similarity=0.820 Sum_probs=49.0
Q ss_pred CCCCCcccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 21 GSTSSSETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 21 ~sss~~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+|+..+.++++|.+|+. +|+||+||+|+++||+.|++ ||+.. +|.++|||+.|+.
T Consensus 1 ~s~g~~~~~~~C~vC~~----~g~ll~Cd~C~~~~H~~Cl~------ppl~~----~p~g~W~C~~C~~ 55 (56)
T 2yql_A 1 GSSGSSGHEDFCSVCRK----SGQLLMCDTCSRVYHLDCLD------PPLKT----IPKGMWICPRCQD 55 (56)
T ss_dssp CCCCCCSSCCSCSSSCC----SSCCEECSSSSCEECSSSSS------SCCCS----CCCSSCCCHHHHC
T ss_pred CCCCcCCCCCCCccCCC----CCeEEEcCCCCcceECccCC------CCcCC----CCCCceEChhhhC
Confidence 35556778899999999 78999999999999999999 88877 8889999999975
No 24
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.32 E-value=1.6e-12 Score=126.04 Aligned_cols=104 Identities=18% Similarity=0.263 Sum_probs=92.8
Q ss_pred cchHHHHHHHHHHHHHHHhCCC------chhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCc
Q 047726 1069 SISSIIMKQCRIVLRQAAAADD------EKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSH 1142 (1297)
Q Consensus 1069 s~SdlimKRCr~VLr~l~ss~~------s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~ 1142 (1297)
+..+.+.+.|+.++..+..... +.+|..|++ ..++|+|..+|++||||+||..|+..|.|. +.
T Consensus 4 ~~p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~----------~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~ 72 (120)
T 3ljw_A 4 SSPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPS----------KVQYPDYYAIIKEPIDLKTIAQRIQNGSYK-SI 72 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCC----------TTTCHHHHHHCSSCCCHHHHHHHHHHTCCC-SH
T ss_pred ccHHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCC----------cccCCChHHHcCCCCCHHHHHHHHccCCCC-CH
Confidence 3457788999999999998776 667777643 246899999999999999999999999998 88
Q ss_pred hhHHHHHHHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1143 DSFLQDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1143 e~FaEDVreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
..|..||+++|+||.+||+.++.++.+|..|.+.|+..+.+
T Consensus 73 ~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 113 (120)
T 3ljw_A 73 HAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAE 113 (120)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999998875
No 25
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.31 E-value=1.8e-12 Score=126.33 Aligned_cols=101 Identities=16% Similarity=0.178 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHhC------CCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhH
Q 047726 1072 SIIMKQCRIVLRQAAAA------DDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSF 1145 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss------~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~F 1145 (1297)
..+.++|+.||+.+... +.+.+|..|++. .++|+|..+|++||||+||..|+..|.|. +...|
T Consensus 14 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~----------~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~-~~~~f 82 (124)
T 3mb4_A 14 TPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSR----------SELPDYYLTIKKPMDMEKIRSHMMANKYQ-DIDSM 82 (124)
T ss_dssp CHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCT----------TTCHHHHHHCSSCCCHHHHHHHHHTTCCC-SHHHH
T ss_pred hHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCc----------cccCCHHHHcCCCCCHHHHHHHHHcCCCC-CHHHH
Confidence 34678999999999874 334666666432 46899999999999999999999999998 88899
Q ss_pred HHHHHHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1146 LQDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1146 aEDVreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
..|++++|+||.+||+.++.++.+|..|.+.|+..|++
T Consensus 83 ~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~ 120 (124)
T 3mb4_A 83 VEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRD 120 (124)
T ss_dssp HHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988774
No 26
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.30 E-value=1.7e-12 Score=121.21 Aligned_cols=58 Identities=31% Similarity=0.674 Sum_probs=50.0
Q ss_pred CCCCCCCCcccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 18 IPSGSTSSSETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 18 iPs~sss~~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
|-........++++|.+|+. +|+||+||+|+++||+.|+. ||+.. +|.|+|+|+.|+.
T Consensus 14 ~~~~~~~~d~n~~~C~vC~~----~g~LL~CD~C~~~fH~~Cl~------PpL~~----~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 14 IIDEFGTLDDSATICRVCQK----PGDLVMCNQCEFCFHLDCHL------PALQD----VPGEEWSCSLCHV 71 (88)
T ss_dssp CCCCCCSSSSSSSCCSSSCS----SSCCEECTTSSCEECTTSSS------TTCCC----CCSSSCCCCSCCC
T ss_pred ccccccccCCCCCcCcCcCC----CCCEEECCCCCCceecccCC------CCCCC----CcCCCcCCccccC
Confidence 33334445677899999999 78999999999999999999 88877 8899999999985
No 27
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.30 E-value=3.7e-12 Score=124.15 Aligned_cols=102 Identities=21% Similarity=0.248 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHH
Q 047726 1074 IMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFW 1153 (1297)
Q Consensus 1074 imKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVW 1153 (1297)
+.+.|+.||+.+..++.+.+|..|++. ..+|+|.++|++||||+||..|+..|.|. +...|..|++++|
T Consensus 14 ~~~~l~~il~~l~~~~~~~~F~~pv~~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-~~~~f~~D~~li~ 82 (123)
T 3hme_A 14 IQQLLEHFLRQLQRKDPHGFFAFPVTD----------AIAPGYSMIIKHPMDFGTMKDKIVANEYK-SVTEFKADFKLMC 82 (123)
T ss_dssp HHHHHHHHHHHHHTTCTTCSSSSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHhhcCCCCh----------hhccCHHHHCCCCCCHHHHHHHhccCCCC-CHHHHHHHHHHHH
Confidence 567899999999999999999888754 25899999999999999999999999998 8889999999999
Q ss_pred hhhhhccCCCchHHHHHHHhhhhhhhhhhhhhH
Q 047726 1154 NNVRTAFGDQPDFVDLAEKLSRNFESLYENEIV 1186 (1297)
Q Consensus 1154 sN~~Tyn~dg~dVv~LAEsLSq~FESrYekqvL 1186 (1297)
+||.+||+.++.++..|..|.+.|+..+.+.-+
T Consensus 83 ~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~ 115 (123)
T 3hme_A 83 DNAMTYNRPDTVYYKLAKKILHAGFKMMSKERL 115 (123)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988876444
No 28
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=113.88 Aligned_cols=53 Identities=26% Similarity=0.856 Sum_probs=47.3
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccccCCc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKNGA 92 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~g~ 92 (1297)
..++++|.+|+. +|+||+||+|+++||+.|++ ||+.. +|.++|||+.|+.+|.
T Consensus 8 ~~~~~~C~vC~~----~g~ll~CD~C~~~fH~~Cl~------p~l~~----~p~g~W~C~~C~~~g~ 60 (61)
T 2l5u_A 8 TDHQDYCEVCQQ----GGEIILCDTCPRAYHMVCLD------PDMEK----APEGKWSCPHCEKEGI 60 (61)
T ss_dssp SCCCSSCTTTSC----CSSEEECSSSSCEEEHHHHC------TTCCS----CCCSSCCCTTGGGGSC
T ss_pred CCCCCCCccCCC----CCcEEECCCCChhhhhhccC------CCCCC----CCCCceECcccccccc
Confidence 455799999999 78999999999999999999 77777 7889999999997654
No 29
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.30 E-value=3.8e-12 Score=124.19 Aligned_cols=111 Identities=14% Similarity=0.203 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHH
Q 047726 1071 SSIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVR 1150 (1297)
Q Consensus 1071 SdlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVr 1150 (1297)
.+.+.++|+.+++.+....... .+++..+|+.++|. .++|+|..+|++||||+||..|+..|.|. +...|..|++
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~--g~~~s~~F~~pv~~--~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~ 81 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSS--RQALAAPLLNLPPK--KKNADYYEKISDPLDLITIEKQILTGYYK-TVEAFDADML 81 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTT--CCBTTGGGSSCCCG--GGCTTHHHHCSSCCCHHHHHHHHHHTCCC-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcC--CCChhHHhcCCCCc--ccCCCHHHHcCCCCCHHHHHHHHHcCCCC-CHHHHHHHHH
Confidence 4668899999999999765411 13333444444443 37999999999999999999999999998 8899999999
Q ss_pred HHHhhhhhccCCCchHHHHHHHhhhhhhhhhhhhhH
Q 047726 1151 EFWNNVRTAFGDQPDFVDLAEKLSRNFESLYENEIV 1186 (1297)
Q Consensus 1151 eVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYekqvL 1186 (1297)
++|+||.+||+.++.++.+|..|.+.|+..+.+..-
T Consensus 82 li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 117 (126)
T 3mqm_A 82 KVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEASA 117 (126)
T ss_dssp HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988876443
No 30
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.29 E-value=3.2e-12 Score=125.98 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHH
Q 047726 1074 IMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFW 1153 (1297)
Q Consensus 1074 imKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVW 1153 (1297)
+...|+.||+.+..++.+++|..|++. .++|+|..+|++||||+||..|+..|.|. +...|..|++++|
T Consensus 14 l~~~l~~il~~l~~~~~~~~F~~pv~~----------~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~-~~~~f~~D~~li~ 82 (135)
T 3rcw_A 14 LTVLLRSVLDQLQDKDPARIFAQPVSL----------KEVPDYLDHIKHPMDFATMRKRLEAQGYK-NLHEFEEDFDLII 82 (135)
T ss_dssp HHHHHHHHHHHHHHTCTTCSSSSCCCT----------TTCTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcchhhcCCCCh----------hhcCCHHHHhCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHH
Confidence 677899999999999999999888765 25899999999999999999999999998 8889999999999
Q ss_pred hhhhhccCCCchHHHHHHHhhhhhhhhhhhh
Q 047726 1154 NNVRTAFGDQPDFVDLAEKLSRNFESLYENE 1184 (1297)
Q Consensus 1154 sN~~Tyn~dg~dVv~LAEsLSq~FESrYekq 1184 (1297)
+||.+||+.++.++..|..|.+.|+..+...
T Consensus 83 ~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~ 113 (135)
T 3rcw_A 83 DNCMKYNARDTVFYRAAVRLRDQGGVVLRQA 113 (135)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888754
No 31
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.28 E-value=2.9e-12 Score=130.27 Aligned_cols=102 Identities=19% Similarity=0.236 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHH
Q 047726 1071 SSIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVR 1150 (1297)
Q Consensus 1071 SdlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVr 1150 (1297)
+....++|+.||+.+..++.+.+|..|++. .++|+|..+|++||||+||..|+..|.|. +...|.+||+
T Consensus 70 ~~~~~~~l~~il~~l~~~~~~~~F~~pv~~----------~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~ 138 (174)
T 2ri7_A 70 TEKDYEGLKRVLRSLQAHKMAWPFLEPVDP----------NDAPDYYGVIKEPMDLATMEERVQRRYYE-KLTEFVADMT 138 (174)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSSCCCT----------TTCHHHHHHCSSCCCHHHHHHHHHTTCCC-BHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhhhhhhcCCCc----------ccCCchHHHhCCcCCHHHHHHHHHcCCCC-CHHHHHHHHH
Confidence 466788999999999999988888887654 25899999999999999999999999998 8889999999
Q ss_pred HHHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1151 EFWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1151 eVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
++|+|+.+||+.++.++.+|..|...|++.+.+
T Consensus 139 li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 171 (174)
T 2ri7_A 139 KIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKG 171 (174)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988764
No 32
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=9.3e-13 Score=123.37 Aligned_cols=52 Identities=50% Similarity=1.253 Sum_probs=47.9
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
++..|.+|+...+.+.||+||.|+++||++|+.|||..+|+|+|||+.|..+
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4568999998777789999999999999999999999999999999999775
No 33
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.27 E-value=1.5e-12 Score=114.87 Aligned_cols=50 Identities=28% Similarity=0.832 Sum_probs=46.1
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
..++++|.+|+. +|+||+||+|+++||+.|++ ||+.. +|.++|||+.|..
T Consensus 5 ~~~~~~C~vC~~----~g~ll~CD~C~~~fH~~Cl~------ppl~~----~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRD----GGELICCDGCPRAFHLACLS------PPLRE----IPSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSC----CSSCEECSSCCCEECTTTSS------SCCSS----CCSSCCCCHHHHH
T ss_pred CCCCCCCccCCC----CCCEEEcCCCChhhcccccC------CCcCc----CCCCCeECccccC
Confidence 457899999999 78999999999999999999 88877 7889999999986
No 34
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.26 E-value=4.8e-12 Score=124.76 Aligned_cols=108 Identities=10% Similarity=0.134 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
.-+.++|+.+++.+....... .+++..+|+.++| ..++|+|..+|++||||+||..|+..+.|. +...|..|+++
T Consensus 16 ~kl~~~~~~l~~~l~~~~d~~--g~~~s~~F~~pv~--~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~-s~~ef~~Dv~L 90 (130)
T 3k2j_A 16 ENLYFQSMQLYDTVRSCRNNQ--GQLIAEPFYHLPS--KKKYPDYYQQIKMPISLQQIRTKLKNQEYE-TLDHLECDLNL 90 (130)
T ss_dssp HHHHHHHHHHHHHHHTCBCSS--SCBTTGGGSSCCC--TTTCHHHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCCccHhhcCCCC--hhhCccHHHHcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHH
Confidence 558899999999998665411 1333333444443 257999999999999999999999999998 88999999999
Q ss_pred HHhhhhhccCCCchHHHHHHHhhhhhhhhhhhh
Q 047726 1152 FWNNVRTAFGDQPDFVDLAEKLSRNFESLYENE 1184 (1297)
Q Consensus 1152 VWsN~~Tyn~dg~dVv~LAEsLSq~FESrYekq 1184 (1297)
+|+||.+||..++.++.+|..|.+.|+..+.+.
T Consensus 91 if~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 123 (130)
T 3k2j_A 91 MFENAKRYNVPNSAIYKRVLKLQQVMQAKKKEL 123 (130)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998753
No 35
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.26 E-value=2.3e-12 Score=114.39 Aligned_cols=50 Identities=34% Similarity=0.640 Sum_probs=45.1
Q ss_pred cccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1224 WDEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1224 w~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
.....|.+|+ +++.||+||.|+++||++|+.|||..+|+|+|||+.|...
T Consensus 10 ~~~~~C~vC~---~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCG---DGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTS---CCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCC---CCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3456799998 5678999999999999999999999999999999999754
No 36
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.25 E-value=5.2e-12 Score=118.03 Aligned_cols=53 Identities=28% Similarity=0.785 Sum_probs=46.9
Q ss_pred cccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCccccc
Q 047726 1224 WDEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNSM 1279 (1297)
Q Consensus 1224 w~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~~ 1279 (1297)
.+++.|.+|+ +++.+|+||.|+++||++|+.|||.++|+|+|+|+.|......
T Consensus 23 ~n~~~C~vC~---~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ 75 (88)
T 1fp0_A 23 DSATICRVCQ---KPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDL 75 (88)
T ss_dssp SSSSCCSSSC---SSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSS
T ss_pred CCCCcCcCcC---CCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCcc
Confidence 3456899998 4578999999999999999999999999999999999876544
No 37
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.25 E-value=3.4e-12 Score=111.24 Aligned_cols=50 Identities=46% Similarity=1.168 Sum_probs=45.3
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCccc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~ 1277 (1297)
++..|.+|+ +++.||+||.|+++||++|+.|||.++|+|+|||+.|..+.
T Consensus 8 ~~~~C~vC~---~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCK---DGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTC---CCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCC---CCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 356799998 56799999999999999999999999999999999998664
No 38
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.24 E-value=2.7e-12 Score=113.27 Aligned_cols=51 Identities=41% Similarity=1.036 Sum_probs=46.4
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
+++.|.+|+ +++.||+||.|+++||++|+.|||..+|+|+|||+.|..++.
T Consensus 7 ~~~~C~vC~---~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 7 NEDECAVCR---DGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp CCCSBSSSS---CCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCCccCC---CCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 567899998 567999999999999999999999999999999999987654
No 39
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.23 E-value=1.8e-12 Score=112.26 Aligned_cols=50 Identities=26% Similarity=0.794 Sum_probs=45.5
Q ss_pred ccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccccC
Q 047726 27 ETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKN 90 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~ 90 (1297)
.++++|.+|+. +|+||+||+|+++||+.|++ ||+.. .|.++|||+.|+..
T Consensus 3 ~~~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~------ppl~~----~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 3 IHEDFCSVCRK----SGQLLMCDTCSRVYHLDCLD------PPLKT----IPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCSSCTTTCC----CSSCEECSSSSCEECGGGSS------SCCSS----CCCSCCCCHHHHHH
T ss_pred CCCCCCcCCCC----CCcEEEcCCCCcCEECCcCC------CCcCC----CCCCceEChhccCh
Confidence 46789999999 78999999999999999999 88877 78899999999863
No 40
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.22 E-value=5e-12 Score=112.24 Aligned_cols=49 Identities=27% Similarity=0.597 Sum_probs=44.7
Q ss_pred ccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 27 ETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
..+..|.+|++ +|+||+||+|+++||+.|++ |++.. +|.++|||+.|..
T Consensus 10 ~~~~~C~vC~~----~~~ll~Cd~C~~~~H~~Cl~------P~l~~----~P~g~W~C~~C~~ 58 (66)
T 2lri_C 10 APGARCGVCGD----GTDVLRCTHCAAAFHWRCHF------PAGTS----RPGTGLRCRSCSG 58 (66)
T ss_dssp CTTCCCTTTSC----CTTCEECSSSCCEECHHHHC------TTTCC----CCSSSCCCTTTTT
T ss_pred CCCCCcCCCCC----CCeEEECCCCCCceecccCC------CccCc----CCCCCEECccccC
Confidence 34577999998 88999999999999999999 88988 8899999999986
No 41
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.21 E-value=4.7e-12 Score=113.38 Aligned_cols=54 Identities=43% Similarity=1.098 Sum_probs=48.1
Q ss_pred Ccccc--cccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCC-CccCccCCcc
Q 047726 1223 PWDEG--ICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEG-NWYCPSCVVR 1276 (1297)
Q Consensus 1223 pw~~~--~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeG-dWyCP~C~~~ 1276 (1297)
.|... .|.+|++..+++.||+||+|+++||++||.|||.++|+| +|||+.|...
T Consensus 13 ~w~C~~C~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 13 NRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TSCCTTTSBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CeECCCCCCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 45443 678999888899999999999999999999999999999 9999999864
No 42
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=7.7e-12 Score=114.04 Aligned_cols=54 Identities=46% Similarity=1.136 Sum_probs=48.1
Q ss_pred CCccc--ccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCC-CccCccCCc
Q 047726 1222 APWDE--GICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEG-NWYCPSCVV 1275 (1297)
Q Consensus 1222 apw~~--~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeG-dWyCP~C~~ 1275 (1297)
..|.. ..|.+|++..+++.||+||.|+++||++||.|||..+|+| +|||+.|..
T Consensus 20 ~~w~C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 20 PEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCCSSSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCeECCCCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 34543 2789999888899999999999999999999999999999 999999974
No 43
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.17 E-value=1e-11 Score=127.75 Aligned_cols=49 Identities=27% Similarity=0.754 Sum_probs=45.9
Q ss_pred ccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 27 ETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.++++|.+|+. +|+|||||+|+++||+.|+. |++.. .|.|+|+|+.|..
T Consensus 2 ~~~~~C~~C~~----~g~ll~Cd~C~~~~H~~C~~------p~l~~----~p~~~W~C~~C~~ 50 (184)
T 3o36_A 2 PNEDWCAVCQN----GGELLCCEKCPKVFHLSCHV------PTLTN----FPSGEWICTFCRD 50 (184)
T ss_dssp CSCSSCTTTCC----CSSCEECSSSSCEECTTTSS------SCCSS----CCSSCCCCTTTSC
T ss_pred CCCCccccCCC----CCeeeecCCCCcccCccccC------CCCCC----CCCCCEECccccC
Confidence 57899999999 89999999999999999999 88887 8899999999986
No 44
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.17 E-value=5.2e-11 Score=123.89 Aligned_cols=97 Identities=21% Similarity=0.227 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccc--cCCChhhhhhhhccc---ccCCCchhHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVS--RPLDFRTIDLRLAVG---AYDGSHDSFL 1146 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVk--RPMDLgTIDlRLAaG---aY~GS~e~Fa 1146 (1297)
....++|+.||..++.++.+++|..||+ ++|+.+|+ +||||+||+.||..+ .|. +...|.
T Consensus 75 ~~~~~~c~~iL~~l~~~~~s~pF~~pV~--------------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~-s~~eF~ 139 (189)
T 2ro1_A 75 PANQRKCERVLLALFCHEPCRPLHQLAT--------------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYS-SPQEFA 139 (189)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHSCSC--------------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCS-CHHHHH
T ss_pred HHHHHHHHHHHhhcccCccchhhcCCCC--------------hhhhccccCCCcccHHHHHHHHhcCCCcccC-CHHHHH
Confidence 4567899999999999999999999865 35888887 799999999999999 898 889999
Q ss_pred HHHHHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhhh
Q 047726 1147 QDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYENE 1184 (1297)
Q Consensus 1147 EDVreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYekq 1184 (1297)
+||++||+|+.+||. ...++.+|..|.+.|+.++.+.
T Consensus 140 ~Dv~Lif~N~~~yN~-~s~~~~~a~~L~~~Fe~~~~~~ 176 (189)
T 2ro1_A 140 QDVGRMFKQFNKLTE-DKADVQSIIGLQRFFETRMNEA 176 (189)
T ss_dssp HHHHHHHHHHHHHCC-SSCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999995 6678899999999999988753
No 45
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.17 E-value=5e-12 Score=109.46 Aligned_cols=51 Identities=45% Similarity=1.096 Sum_probs=45.5
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
++..|.+|+ +++.||+||.|+++||++|+.|||..+|.|+|||+.|.....
T Consensus 4 ~~~~C~vC~---~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCR---KSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTC---CCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCC---CCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 456899998 457999999999999999999999999999999999976543
No 46
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.17 E-value=4.6e-11 Score=121.42 Aligned_cols=102 Identities=17% Similarity=0.191 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHh-----CCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHH
Q 047726 1073 IIMKQCRIVLRQAAA-----ADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQ 1147 (1297)
Q Consensus 1073 limKRCr~VLr~l~s-----s~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaE 1147 (1297)
.-...|..||..++. ++.+++|..|++. ..+|+|..+|++||||+||..|+..|.|. +...|..
T Consensus 25 d~~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~----------~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~-s~~ef~~ 93 (158)
T 3uv4_A 25 DDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNK----------KFVPDYYKVIVNPMDLETIRKNISKHKYQ-SRESFLD 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHcCCCchhhcCcCCh----------hhcccHHHHcCCccCHHHHHHHHHcCCCC-CHHHHHH
Confidence 457778888888754 5777888888654 24899999999999999999999999998 8899999
Q ss_pred HHHHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhhhh
Q 047726 1148 DVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYENEI 1185 (1297)
Q Consensus 1148 DVreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYekqv 1185 (1297)
||+++|+||.+||..++.++.+|..|...|+..+.+..
T Consensus 94 Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~~ 131 (158)
T 3uv4_A 94 DVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYD 131 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877643
No 47
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.16 E-value=2.5e-11 Score=121.59 Aligned_cols=99 Identities=12% Similarity=0.256 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHhCCC-------chhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHH
Q 047726 1074 IMKQCRIVLRQAAAADD-------EKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFL 1146 (1297)
Q Consensus 1074 imKRCr~VLr~l~ss~~-------s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~Fa 1146 (1297)
--++|+.+|..++.... +.+|..+++ ..++|+|..+|++||||+||..|+..|.|. +...|.
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~----------~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~ 93 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPS----------KKDYPDYYKIILEPMDLKIIEHNIRNDKYA-GEEGMI 93 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCC----------TTTCHHHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCc----------hhhCcCHHHHhCCCCCHHHHHHHHhcCCCC-CHHHHH
Confidence 46789999999986654 455544432 346899999999999999999999999998 888999
Q ss_pred HHHHHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1147 QDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1147 EDVreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
.|++++|+||.+||..++.++.+|..|.+.|+..+.+
T Consensus 94 ~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~ 130 (150)
T 3tlp_A 94 EDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKE 130 (150)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998775
No 48
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.16 E-value=1e-11 Score=130.17 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcc---cccCCCchhHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAV---GAYDGSHDSFLQD 1148 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAa---GaY~GS~e~FaED 1148 (1297)
....++|+.||..++.++.+.+|..|++. ++|+|..+|++||||+||..||.. |.|. +...|..|
T Consensus 80 ~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-----------~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~-s~~~f~~D 147 (207)
T 3u5n_A 80 PVDQRKCERLLLYLYCHELSIEFQEPVPA-----------SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQ-IPDDFVAD 147 (207)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGSSCCCT-----------TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCS-SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhhhhccCCh-----------hhccHhHHhCCccCHHHHHHHHhcccCCCcC-CHHHHHHH
Confidence 44556666666666666666665555421 256666666666666666666664 4555 55566666
Q ss_pred HHHHHhhhhhccC
Q 047726 1149 VREFWNNVRTAFG 1161 (1297)
Q Consensus 1149 VreVWsN~~Tyn~ 1161 (1297)
|++||+|+.+||.
T Consensus 148 v~li~~Na~~yN~ 160 (207)
T 3u5n_A 148 VRLIFKNCERFNE 160 (207)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC
Confidence 6666666666665
No 49
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.16 E-value=5.8e-12 Score=110.28 Aligned_cols=55 Identities=27% Similarity=0.885 Sum_probs=47.4
Q ss_pred cccccccccccC--CCCCCeEEecCCCCCCcccccCCCCCC--C-CCCCccCccCCcccc
Q 047726 1224 WDEGICKVCGVD--KDDDSVLLCDTCDAEYHTYCLEPPLVR--I-PEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1224 w~~~~CkVCg~~--~d~~~LLLCD~CD~aYHl~CL~PPL~~--I-PeGdWyCP~C~~~~~ 1278 (1297)
.++..|.+|+.. .+.+.||+||.|+++||++|+.|||.. + |+|+|||+.|..++.
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 356789999976 345899999999999999999999987 4 999999999987654
No 50
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.16 E-value=6.8e-12 Score=116.64 Aligned_cols=54 Identities=26% Similarity=0.642 Sum_probs=46.9
Q ss_pred cccccccccCCC--CCCeEEecCCCCCCcccccCCCCCC----CCCCCccCccCCccccc
Q 047726 1226 EGICKVCGVDKD--DDSVLLCDTCDAEYHTYCLEPPLVR----IPEGNWYCPSCVVRNSM 1279 (1297)
Q Consensus 1226 ~~~CkVCg~~~d--~~~LLLCD~CD~aYHl~CL~PPL~~----IPeGdWyCP~C~~~~~~ 1279 (1297)
...|.+|++..+ .+.||+||.|+++||++||.|||.. +|+|+|||+.|......
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 457999997654 4789999999999999999999995 99999999999876543
No 51
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.16 E-value=9e-12 Score=108.58 Aligned_cols=48 Identities=42% Similarity=1.151 Sum_probs=44.0
Q ss_pred cccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1226 EGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1226 ~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
+..|.+|+ +.+.||+||.|+++||++|+.|||+++|+|+|||+.|...
T Consensus 11 ~~~C~vC~---~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 11 QDYCEVCQ---QGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCTTTS---CCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCccCC---CCCcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 46899998 4689999999999999999999999999999999999754
No 52
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=8.2e-12 Score=106.84 Aligned_cols=48 Identities=48% Similarity=1.183 Sum_probs=43.6
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVV 1275 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~ 1275 (1297)
++..|.+|+ +.+.||+||.|+++||++|+.|||..+|+|+|||+.|..
T Consensus 8 ~~~~C~vC~---~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCR---KSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSC---CSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCC---CCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456899998 457999999999999999999999999999999999963
No 53
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.16 E-value=4.4e-11 Score=125.40 Aligned_cols=53 Identities=26% Similarity=0.714 Sum_probs=47.8
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccccCCc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKNGA 92 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~g~ 92 (1297)
..++++|.+|+. +|+||+||+|+++||+.|++ ||+.. +|.|+|+||.|+..+.
T Consensus 4 d~~~~~C~~C~~----~g~ll~Cd~C~~~~H~~Cl~------p~l~~----~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 4 DPNEDWCAVCQN----GGDLLCCEKCPKVFHLTCHV------PTLLS----FPSGDWICTFCRDIGK 56 (207)
T ss_dssp CSSCSSBTTTCC----CEEEEECSSSSCEECTTTSS------SCCSS----CCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCC----CCceEEcCCCCCccCCccCC------CCCCC----CCCCCEEeCceeCccc
Confidence 457899999999 88999999999999999999 88887 8899999999997443
No 54
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.15 E-value=1.2e-11 Score=112.78 Aligned_cols=53 Identities=43% Similarity=1.129 Sum_probs=47.1
Q ss_pred Ccccc--cccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCC-ccCccCCc
Q 047726 1223 PWDEG--ICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGN-WYCPSCVV 1275 (1297)
Q Consensus 1223 pw~~~--~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGd-WyCP~C~~ 1275 (1297)
.|.+. .|.+|++..+++.||+||.|+++||++||.|||..+|+|+ |||+.|+.
T Consensus 21 ~W~C~~C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 21 NRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TSCCTTTSBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCCCCcCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 35433 6889998888999999999999999999999999999999 99999974
No 55
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.15 E-value=1.1e-11 Score=103.76 Aligned_cols=48 Identities=29% Similarity=0.756 Sum_probs=42.7
Q ss_pred ccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 31 LCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 31 ~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.|.+|+.++. +++||+||+|+++||+.|++ |++.. +|+++|||+.|+.
T Consensus 2 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~------p~l~~----~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLR------PALYE----VPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC-CSCCEECTTTCCEECHHHHC------TTCCS----CCSSCCSCTTTSC
T ss_pred CCCCCCCCCC-CCCEEECCCCChhhCcccCC------CCcCC----CCCCcEECcCccc
Confidence 6999999664 44899999999999999999 88877 8889999999975
No 56
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.14 E-value=8.5e-12 Score=115.97 Aligned_cols=56 Identities=25% Similarity=0.606 Sum_probs=46.6
Q ss_pred cccccccccccccC-CCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 28 TTSLCGACGVAAEA-EGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~-~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
++.+|.+|+.++.. .++||+||+|+++||+.|++ ||+...+..+|.++|||+.|+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~------Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHK------PQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSS------SCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCC------CcccccccCCCCCCeeCccccc
Confidence 47899999997654 36999999999999999999 8876322237899999999986
No 57
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.14 E-value=6.7e-11 Score=116.20 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHH
Q 047726 1074 IMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFW 1153 (1297)
Q Consensus 1074 imKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVW 1153 (1297)
+-..|+.++..+..++.+++|..|++. .++|+|..+|++||||+||..|+..|.|. +...|..|++++|
T Consensus 11 l~~~l~~il~~l~~~~~~~~F~~pv~~----------~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~-~~~~f~~D~~li~ 79 (130)
T 3dai_A 11 LRIFLRNVTHRLAIDKRFRVFTKPVDP----------DEVPDYVTVIKQPMDLSSVISKIDLHKYL-TVKDYLRDIDLIC 79 (130)
T ss_dssp HHHHHHHHHHHHHTSGGGGGGSSCCCT----------TTCTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccHhhcCCCCh----------hhcCCHHHHcCCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Confidence 566788889999999999999999765 24899999999999999999999999998 8889999999999
Q ss_pred hhhhhccCCCchH----HHHHHHhhhhhhhhh
Q 047726 1154 NNVRTAFGDQPDF----VDLAEKLSRNFESLY 1181 (1297)
Q Consensus 1154 sN~~Tyn~dg~dV----v~LAEsLSq~FESrY 1181 (1297)
+||.+||+.++.+ +..|..|...+....
T Consensus 80 ~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~i 111 (130)
T 3dai_A 80 SNALEYNPDRDPGDRLIRHRACALRDTAYAII 111 (130)
T ss_dssp HHHHHHCCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 9999999998766 445555555544443
No 58
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.4e-11 Score=115.35 Aligned_cols=53 Identities=21% Similarity=0.606 Sum_probs=46.3
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
..++..|.+|+.+... ++||+||+|+++||+.|++ ||+.. +|.++|||+.|..
T Consensus 13 ~~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~------Ppl~~----~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 13 FIDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLL------PPLPE----IPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSS------SCCSS----CCSSCCCCHHHHH
T ss_pred ccCCCCCccCCCcCCC-CCEEEcCCCCchhccccCC------CCccc----CCCCCcCCccCcC
Confidence 4557899999995543 3799999999999999999 88877 8899999999986
No 59
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.11 E-value=1.5e-11 Score=110.50 Aligned_cols=54 Identities=24% Similarity=0.648 Sum_probs=45.7
Q ss_pred CCcccccccccccccc-cCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 24 SSSETTSLCGACGVAA-EAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 24 s~~e~d~~C~vCg~~e-~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+...++++|.+|+.++ ..+++||+||+|+++||++|++ |+. +|+|+|||+.|..
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~------~~~------vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG------VPY------IPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHT------CSS------CCSSCCCCHHHHH
T ss_pred cCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCC------CCc------CCCCCcCCccCcC
Confidence 4456789999999865 3455999999999999999999 553 7889999999986
No 60
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.10 E-value=2.5e-11 Score=106.29 Aligned_cols=58 Identities=26% Similarity=0.687 Sum_probs=46.1
Q ss_pred ccccccccccccccc-CCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccccC
Q 047726 26 SETTSLCGACGVAAE-AEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKN 90 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~-~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~ 90 (1297)
+.++.+|.+|+.++. ..++||+||+|+++||+.|++ ||+...+. .|.++|||+.|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~------p~l~~~~~-~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHT------PHIDSSVI-DSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSS------SCCCHHHH-HSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCC------Cccccccc-CCCCCEECCCCcCc
Confidence 456789999999642 346999999999999999999 76644111 37899999999863
No 61
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=2.1e-10 Score=113.48 Aligned_cols=94 Identities=16% Similarity=0.158 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
..+-..|+.||..++.++.+++|..| +|+|..+|++||||+||..|+..|.|. +...|..|+++
T Consensus 11 ~~L~~~~~~il~~l~~~~~~~~F~~P---------------~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~~f~~D~~L 74 (131)
T 2dkw_A 11 RELRLFLRDVTKRLATDKRFNIFSKP---------------VSDYLEVIKEPMDLSTVITKIDKHNYL-TAKDFLKDIDL 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCTTSSC---------------CSSCTTSCSSCCCHHHHHHHHHTTCCC-SSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCc---------------CccHHhHcCCCcCHHHHHHHHcCCCCC-CHHHHHHHHHH
Confidence 45677899999999999998888876 689999999999999999999999999 88889999999
Q ss_pred HHhhhhhccCCCchH----HHHHHHhhhhhhhhh
Q 047726 1152 FWNNVRTAFGDQPDF----VDLAEKLSRNFESLY 1181 (1297)
Q Consensus 1152 VWsN~~Tyn~dg~dV----v~LAEsLSq~FESrY 1181 (1297)
+|+||.+||..++.+ +..|..|...|....
T Consensus 75 i~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~l 108 (131)
T 2dkw_A 75 ICSNALEYNPDKDPGDKIIRHRACTLKDTAHAII 108 (131)
T ss_dssp HHHHHHHSCCCSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 999999999998754 567777776665543
No 62
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.08 E-value=1.4e-10 Score=125.70 Aligned_cols=102 Identities=11% Similarity=0.188 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
..+.+.|+.||..+..++.+++|..|++. ..+|+|..+|++||||+||..|+..|.|. +...|..|+++
T Consensus 13 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~----------~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~-~~~~f~~D~~l 81 (265)
T 3uv5_A 13 VTLSSILESIINDMRDLPNTYPFHTPVNA----------KVVKDYYKIITRPMDLQTLRENVRKRLYP-SREEFREHLEL 81 (265)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchhhhCCCCh----------hhcCCHHHHhCCCCcHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence 46888999999999999999999999765 23899999999999999999999999998 88999999999
Q ss_pred HHhhhhhccCCCchHHHHHHHhhhhhhhhhhhh
Q 047726 1152 FWNNVRTAFGDQPDFVDLAEKLSRNFESLYENE 1184 (1297)
Q Consensus 1152 VWsN~~Tyn~dg~dVv~LAEsLSq~FESrYekq 1184 (1297)
+|+||.+||+.++.++.+|..|...|+..+.+.
T Consensus 82 i~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~~~ 114 (265)
T 3uv5_A 82 IVKNSATYNGPKHSLTQISQSMLDLCDEKLKEK 114 (265)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887653
No 63
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.07 E-value=1.3e-10 Score=127.80 Aligned_cols=116 Identities=10% Similarity=0.178 Sum_probs=93.7
Q ss_pred CCCccCCCCcccccchHHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcc
Q 047726 1056 QNSEKGCKKKTVISISSIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAV 1135 (1297)
Q Consensus 1056 ~~P~k~~~~~~~~s~SdlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAa 1135 (1297)
++|.+...+...+. ...+...|..||..+..++.+++|..|++. ..+++|..+|++||||+||..|+..
T Consensus 31 ~~~~~~~~rr~~~p-~~~l~~~~~~il~~l~~~~~a~~F~~pV~~----------~~~pdY~~iIk~PmDL~tIk~kl~~ 99 (292)
T 3aad_A 31 NRPHKSIHRRRTDP-MVTLSSILESIINDMRDLPNTYPFHTPVNA----------KVVKDYYKIITRPMDLQTLRENVRK 99 (292)
T ss_dssp -----------CCH-HHHHHHHHHHHHHHHSSSTTCGGGSSSCCT----------TTSTTHHHHCSSCCCHHHHHHHHHT
T ss_pred cCCcccccccccCh-HHHHHHHHHHHHHHHHhCCcchhhcCCCCc----------hhcccHHHHcCCcCCHHHHHHHhhC
Confidence 44544433333321 245778999999999999999999998765 2489999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1136 GAYDGSHDSFLQDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1136 GaY~GS~e~FaEDVreVWsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
|.|. +...|.+|++++|+||.+||..++.++.+|..|...|+.++.+
T Consensus 100 ~~Y~-s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~ 146 (292)
T 3aad_A 100 RLYP-SREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKE 146 (292)
T ss_dssp TCCS-SHHHHHHHHHHHHHHHHHHTCSSSHHHHHHTHHHHTTTTTGGG
T ss_pred CCcC-CHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhhc
Confidence 9998 7888999999999999999999999999999999999988765
No 64
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=99.04 E-value=6.5e-11 Score=126.67 Aligned_cols=49 Identities=47% Similarity=1.281 Sum_probs=41.4
Q ss_pred cccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCC-CccCccCCcc
Q 047726 1228 ICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEG-NWYCPSCVVR 1276 (1297)
Q Consensus 1228 ~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeG-dWyCP~C~~~ 1276 (1297)
.|.+|+...+++.||+||+|+++||++||.|||..+|+| +|+||.|...
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 699999888899999999999999999999999999999 9999999754
No 65
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.04 E-value=3.5e-11 Score=108.19 Aligned_cols=53 Identities=30% Similarity=0.876 Sum_probs=45.8
Q ss_pred CcccccccccccCC--CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCccc
Q 047726 1223 PWDEGICKVCGVDK--DDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1223 pw~~~~CkVCg~~~--d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~ 1277 (1297)
..++..|.+|++.. +++.||+||.|+++||++|+.|+ .+|+|+|||+.|..++
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~--~vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQSR 67 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS--SCCSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC--cCCCCCcCCccCcCcC
Confidence 34567899998764 67899999999999999999998 4999999999997653
No 66
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.03 E-value=7.8e-11 Score=122.60 Aligned_cols=47 Identities=36% Similarity=0.822 Sum_probs=44.1
Q ss_pred ccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+++|.+|+. +|+||+||+|+++||+.|+. ||+.. .|.|+|+|+.|+.
T Consensus 2 ~~~C~~C~~----~g~ll~Cd~C~~~~H~~Cl~------p~l~~----~p~g~W~C~~C~~ 48 (189)
T 2ro1_A 2 ATICRVCQK----PGDLVMCNQCEFCFHLDCHL------PALQD----VPGEEWSCSLCHV 48 (189)
T ss_dssp CCCBTTTCC----CSSCCCCTTTCCBCCSTTST------TCCSS----CCCTTCCTTTTSC
T ss_pred CCcCccCCC----CCceeECCCCCchhccccCC------CCccc----CCCCCCCCcCccC
Confidence 588999999 88999999999999999999 88887 8899999999986
No 67
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=1.1e-10 Score=106.37 Aligned_cols=50 Identities=24% Similarity=0.666 Sum_probs=44.4
Q ss_pred ccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCC-Ccccccccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLL-EWVCADCVK 89 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~-~W~Cp~C~~ 89 (1297)
+..|.+|+.++. +++||+||+|+++||+.|++ ||+.. +|.| +|||+.|..
T Consensus 26 ~c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~------Ppl~~----~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHE-PNMQLLCDECNVAYHIYCLN------PPLDK----VPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCC-STTEEECSSSCCEEETTSSS------SCCSS----CCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCC-CCCEEEcCCCCccccccccC------CCccC----CCCCCCcCCcCccC
Confidence 458999998665 56999999999999999999 88988 7888 999999974
No 68
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.01 E-value=4.7e-11 Score=111.18 Aligned_cols=54 Identities=30% Similarity=0.904 Sum_probs=46.7
Q ss_pred ccccccccccCC--CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcccccc
Q 047726 1225 DEGICKVCGVDK--DDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNSMV 1280 (1297)
Q Consensus 1225 ~~~~CkVCg~~~--d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~~~ 1280 (1297)
++..|.+|+... +.+.||+||.|+++||++|+.|++ +|+|+|||+.|.......
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHTTSC
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccCccchh
Confidence 456899999654 566999999999999999999985 999999999998876554
No 69
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.01 E-value=8.6e-11 Score=109.39 Aligned_cols=53 Identities=23% Similarity=0.646 Sum_probs=44.2
Q ss_pred Ccccccccccccccc-cCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 25 SSETTSLCGACGVAA-EAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 25 ~~e~d~~C~vCg~~e-~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
..+++++|.+|+.++ ...++||+||+|+++||+.|++ |+. +|.|+|||+.|..
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~------p~~------vP~g~W~C~~C~~ 74 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG------VPY------IPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHT------CSS------CCSSCCCCHHHHH
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCC------CCc------cCCCceECccccC
Confidence 346789999999954 2233999999999999999999 554 6789999999986
No 70
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.00 E-value=9.8e-11 Score=113.05 Aligned_cols=55 Identities=44% Similarity=1.096 Sum_probs=48.2
Q ss_pred CCcccc---cccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1222 APWDEG---ICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1222 apw~~~---~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
..|... .|.+|+...+++.||+||.|+++||++|+.|||..+|+|+|||+.|...
T Consensus 51 ~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 51 YKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp TTCCCGGGCCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred CccCccccCccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 346544 5778888778899999999999999999999999999999999999754
No 71
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.00 E-value=1.4e-10 Score=103.89 Aligned_cols=48 Identities=27% Similarity=0.772 Sum_probs=42.8
Q ss_pred ccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCC-Ccccccccc
Q 047726 31 LCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLL-EWVCADCVK 89 (1297)
Q Consensus 31 ~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~-~W~Cp~C~~ 89 (1297)
+|.+|+.++. +|+||+||+|+++||+.||+ ||+.. +|.| +|||+.|..
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~------Ppl~~----~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLD------PPLSS----VPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSS------SCCSS----CCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCC------CCcCC----CCCCCCcCCcCccC
Confidence 6889998665 55999999999999999999 88988 7888 999999985
No 72
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.00 E-value=1.1e-10 Score=104.66 Aligned_cols=60 Identities=20% Similarity=0.618 Sum_probs=46.9
Q ss_pred CCcccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccccCCccc
Q 047726 24 SSSETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKNGAKS 94 (1297)
Q Consensus 24 s~~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~g~k~ 94 (1297)
....++.+|.+|+.++. ++.+|+||+|+++||+.|++ ++... .+.++|||+.|..+..|.
T Consensus 13 ~~~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~------~~~~~----~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 13 EWGNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVG------IMAAP----PEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp SSSCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHT------CSSCC----CSSSCCCCTTTHHHHCSC
T ss_pred ccCCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCC------CCccC----CCCCCEEChhccCchhhc
Confidence 33456789999999765 44899999999999999999 45544 456899999998754333
No 73
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.00 E-value=1.5e-10 Score=110.68 Aligned_cols=59 Identities=36% Similarity=0.992 Sum_probs=50.7
Q ss_pred CCCCCcccc---cccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCccc
Q 047726 1219 IPKAPWDEG---ICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1219 lprapw~~~---~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~ 1277 (1297)
+++..|... .|.+|++..+++.||+||.|+++||++|+.|||..+|+|+|||+.|...+
T Consensus 44 ~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 44 LKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp TTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred ccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 345677665 46788887778889999999999999999999999999999999997653
No 74
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.99 E-value=1.7e-10 Score=111.04 Aligned_cols=56 Identities=39% Similarity=1.010 Sum_probs=46.7
Q ss_pred CCCcccc---cccccccC-CCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1221 KAPWDEG---ICKVCGVD-KDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1221 rapw~~~---~CkVCg~~-~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
+..|... .|.+|+.. .+++.+|+||.|+++||++||.|||.++|+|+|||+.|+.+
T Consensus 53 ~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~k 112 (112)
T 3v43_A 53 ALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRPR 112 (112)
T ss_dssp TSCCCCTTTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSCC
T ss_pred ccccccccCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCCc
Confidence 4567655 46677754 35678999999999999999999999999999999999753
No 75
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.90 E-value=4.9e-10 Score=102.33 Aligned_cols=49 Identities=24% Similarity=0.756 Sum_probs=42.1
Q ss_pred cccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCC-cccccccc
Q 047726 30 SLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLE-WVCADCVK 89 (1297)
Q Consensus 30 ~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~-W~Cp~C~~ 89 (1297)
-.|.+|+..+.. ++||+||+|+++||+.|++ ||+.. +|.++ |||+.|++
T Consensus 27 C~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~------PpL~~----~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 27 CACHLCGGRQDP-DKQLMCDECDMAFHIYCLD------PPLSS----VPSEDEWYCPECRN 76 (77)
T ss_dssp TSBTTTCCCSCG-GGEEECTTTCCEEETTTSS------SCCSS----CCSSSCCCCTTTC-
T ss_pred CcCCccCCCCCC-cceeEeCCCCCccCcccCC------CcccC----CCCCCceECcCccc
Confidence 368888886654 4999999999999999999 89988 88898 99999974
No 76
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=98.89 E-value=1.4e-09 Score=118.13 Aligned_cols=89 Identities=19% Similarity=0.248 Sum_probs=80.4
Q ss_pred HHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhhhhhccCCCc
Q 047726 1085 AAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTAFGDQP 1164 (1297)
Q Consensus 1085 l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN~~Tyn~dg~ 1164 (1297)
++.++.+++|..|++. ..+|+|..+|++||||+||..|+..|.|. +...|..|++++|+||.+||..++
T Consensus 149 l~~~~~~~~F~~pv~~----------~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~-~~~~f~~D~~lif~Na~~yN~~~s 217 (265)
T 3uv5_A 149 MMAVPDSWPFHHPVNK----------KFVPDYYKVIVNPMDLETIRKNISKHKYQ-SRESFLDDVNLILANSVKYNGPES 217 (265)
T ss_dssp TTTSTTCGGGTSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHhhhhhHHHhCCCCh----------hHhCcHHHHhCCcccHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHCCCCC
Confidence 5577888888888764 24899999999999999999999999998 888999999999999999999999
Q ss_pred hHHHHHHHhhhhhhhhhhhh
Q 047726 1165 DFVDLAEKLSRNFESLYENE 1184 (1297)
Q Consensus 1165 dVv~LAEsLSq~FESrYekq 1184 (1297)
.++.+|..|.+.|+..+.+.
T Consensus 218 ~~~~~A~~l~~~~~~~~~~~ 237 (265)
T 3uv5_A 218 QYTKTAQEIVNVCYQTLTEY 237 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887753
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.87 E-value=6.5e-10 Score=99.66 Aligned_cols=53 Identities=30% Similarity=0.676 Sum_probs=47.6
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCccc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~ 1277 (1297)
+..+|.+|++..+++.||+||.|+..||++|+.+++..+|.++|||+.|..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 34579999988887789999999999999999999999999999999997764
No 78
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.85 E-value=1.1e-09 Score=105.46 Aligned_cols=49 Identities=29% Similarity=0.837 Sum_probs=44.3
Q ss_pred ccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 31 LCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 31 ~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+|.+|+.+....++||+||.|+++||+.|++ ||+.. +|+++|||+.|..
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~------p~l~~----~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCD------PPLTR----MPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCS------SCCSS----CCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCC------CCCCC----CCCCCeECCCCCC
Confidence 7999998665667999999999999999999 88988 8999999999974
No 79
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.85 E-value=8.2e-10 Score=118.26 Aligned_cols=50 Identities=26% Similarity=0.742 Sum_probs=40.8
Q ss_pred ccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCC-Ccccccccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLL-EWVCADCVK 89 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~-~W~Cp~C~~ 89 (1297)
+..|.+|+.++. +++||+||+|+++||+.|++ ||+.. +|.| +||||.|..
T Consensus 174 ~c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~------PPL~~----vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQD-PDKQLMCDECDMAFHIYCLD------PPLSS----VPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC---CCEECSSSCCEECSCC--------CCCCS----CCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCC-CCCeEEcCCCCcceeCccCC------CCccc----CCCCCCCCCcCCcC
Confidence 457999998665 45999999999999999999 89988 7888 999999975
No 80
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=98.85 E-value=2.5e-09 Score=117.75 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=79.9
Q ss_pred HHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhhhhhccCCC
Q 047726 1084 QAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTAFGDQ 1163 (1297)
Q Consensus 1084 ~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN~~Tyn~dg 1163 (1297)
.+..++.+++|..|++. ..+++|..+|++||||+||..|+..|.|. +...|..|++++|+||.+||..+
T Consensus 181 ~l~~~~~s~~F~~pvd~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~Li~~Na~~yN~~~ 249 (292)
T 3aad_A 181 KMMAVPDSWPFHHPVNK----------KFVPDYYKVIVNPMDLETIRKNISKHKYQ-SRESFLDDVNLILANSVKYNGPE 249 (292)
T ss_dssp TGGGSTTCGGGTSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhhcCcchhHHHhcccc----------cccccHHHHcCCcCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHCCCC
Confidence 35567778888887653 35899999999999999999999999999 88999999999999999999999
Q ss_pred chHHHHHHHhhhhhhhhhhhh
Q 047726 1164 PDFVDLAEKLSRNFESLYENE 1184 (1297)
Q Consensus 1164 ~dVv~LAEsLSq~FESrYekq 1184 (1297)
+.++.+|..|...|+..+...
T Consensus 250 s~i~~~A~~L~~~~~~~~~~~ 270 (292)
T 3aad_A 250 SQYTKTAQEIVNVCYQTLTEY 270 (292)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887653
No 81
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.82 E-value=1.2e-09 Score=105.50 Aligned_cols=48 Identities=27% Similarity=0.799 Sum_probs=43.3
Q ss_pred ccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 31 LCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 31 ~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.|.+|+.++. +++||+||+|+++||+.|++ ||+.. +|.|+|||+.|..
T Consensus 60 ~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~------ppl~~----~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 60 SCILCGTSEN-DDQLLFCDDCDRGYHMYCLN------PPVAE----PPEGSWSCHLCWE 107 (114)
T ss_dssp CCTTTTCCTT-TTTEEECSSSCCEEETTTSS------SCCSS----CCSSCCCCHHHHH
T ss_pred ccCcccccCC-CCceEEcCCCCccccccccC------CCccC----CCCCCeECccccc
Confidence 6999999665 45999999999999999999 88887 8899999999985
No 82
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=98.80 E-value=2.6e-09 Score=118.91 Aligned_cols=88 Identities=17% Similarity=0.274 Sum_probs=77.6
Q ss_pred CCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhhhhhccCCCchHHH
Q 047726 1089 DDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTAFGDQPDFVD 1168 (1297)
Q Consensus 1089 ~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN~~Tyn~dg~dVv~ 1168 (1297)
+.+++|..|++. .++|+|..+|++||||+||..|+..|.|. +...|..||+++|+||.+||..++.++.
T Consensus 179 ~~s~~F~~pvd~----------~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~-s~~ef~~Dv~Lif~N~~~yN~~~s~i~~ 247 (311)
T 2r0y_A 179 KLSEPFMELVDK----------DELPEYYEIVHSPMALSIVKQNLEIGQYS-KIYDFIIDMLLVFQNAHIFNDPSALIYK 247 (311)
T ss_dssp CTTGGGSSCCCT----------TTCHHHHHHCSSCCCHHHHHHHHHHTCCC-BHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred ccHHHHhCCCCh----------hhcccHHHHhCCccCHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 445566666543 25899999999999999999999999998 8899999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhHh
Q 047726 1169 LAEKLSRNFESLYENEIVT 1187 (1297)
Q Consensus 1169 LAEsLSq~FESrYekqvL~ 1187 (1297)
+|..|...|+.++.+..+.
T Consensus 248 ~A~~L~~~f~~~~~~~~~p 266 (311)
T 2r0y_A 248 DATTLTNYFNYLIQKEFFP 266 (311)
T ss_dssp HHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999999876544
No 83
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.79 E-value=2.5e-09 Score=103.13 Aligned_cols=50 Identities=28% Similarity=0.652 Sum_probs=43.2
Q ss_pred CCcccccccccccccccCCCCEEecC--CCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 24 SSSETTSLCGACGVAAEAEGDVVVCD--ACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 24 s~~e~d~~C~vCg~~e~~~GdLlcCD--~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
...+++++|.+|+. +|+||+|| +|+++||+.|++ +.. +|.|+||||.|.-
T Consensus 10 ~~~~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--------L~~----~P~g~W~Cp~c~C 61 (107)
T 4gne_A 10 PKQMHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--------LTQ----PPYGKWECPWHQC 61 (107)
T ss_dssp CCCSSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--------CSS----CCSSCCCCGGGBC
T ss_pred CcCCCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--------CCc----CCCCCEECCCCCC
Confidence 34567899999998 89999999 899999999999 444 7889999998863
No 84
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.78 E-value=3.6e-09 Score=119.68 Aligned_cols=88 Identities=18% Similarity=0.281 Sum_probs=77.6
Q ss_pred CCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHHhhhhhccCCCchHHH
Q 047726 1089 DDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTAFGDQPDFVD 1168 (1297)
Q Consensus 1089 ~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVWsN~~Tyn~dg~dVv~ 1168 (1297)
..+++|..|++. . ++|+|+.+|++||||+||..||..|.|. +...|..||+++|+||.+||..++.++.
T Consensus 229 ~~s~~F~~pvd~--------~--~~PdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~Dv~Lif~N~~~yN~~~s~i~~ 297 (361)
T 2r10_A 229 KLSEPFMELVDK--------D--ELPEYYEIVHSPMALSIVKQNLEIGQYS-KIYDFIIDMLLVFQNAHIFNDPSALIYK 297 (361)
T ss_dssp CTTGGGSSCCCT--------T--TCTHHHHHCSSCCCHHHHHHHHHHTCCC-BHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred cchhcccCCCCh--------h--hcccHHHHhcCcccHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 445666666543 2 5899999999999999999999999998 8899999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhHh
Q 047726 1169 LAEKLSRNFESLYENEIVT 1187 (1297)
Q Consensus 1169 LAEsLSq~FESrYekqvL~ 1187 (1297)
+|..|...|+..+.+..+.
T Consensus 298 ~A~~L~~~f~~~~~~~~~p 316 (361)
T 2r10_A 298 DATTLTNYFNYLIQKEFFP 316 (361)
T ss_dssp HHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999999876544
No 85
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.76 E-value=1.6e-09 Score=108.98 Aligned_cols=54 Identities=20% Similarity=0.548 Sum_probs=43.7
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCC--C-CCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQP--Y-HHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p--~-~~p~~~W~Cp~C~~ 89 (1297)
+.++++|++|+. +|+|+|||.|+|+||+.|+. |++...- . ..|.++|+|+.|..
T Consensus 60 Dg~~d~C~vC~~----GG~LlcCD~Cpr~Fh~~Cl~------p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAE----GGNLICCDFCHNAFCKKCIL------RNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCC----CSSEEECSSSCCEEEHHHHH------HHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCC----CCcEEeCCCCCCeeeHhhcC------CCCChhhhhhcccCCCCCEeecccC
Confidence 445899999999 99999999999999999999 5553100 0 14789999999985
No 86
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.70 E-value=1.1e-08 Score=92.01 Aligned_cols=50 Identities=26% Similarity=0.796 Sum_probs=40.5
Q ss_pred ccccccccccccccCCCCEEecCC--CC-CcccccccccccccCCcccCCCCCCCCCCccccccccCC
Q 047726 27 ETTSLCGACGVAAEAEGDVVVCDA--CE-RGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKNG 91 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~GdLlcCD~--C~-R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~g 91 (1297)
.+..+| +|+.+.. |+||.||. |+ .+||+.|++ +.. .|.+.||||.|....
T Consensus 14 ~~~~~C-~C~~~~~--g~MI~CD~~~C~~~wfH~~Cvg--------l~~----~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACVG--------LTT----KPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSC--SSEECCSCSSCSCCCEETTTTT--------CSS----CCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCC--CCEeEeeCCCCCCccEecccCC--------cCc----CCCCCEECCCCCccc
Confidence 346899 7999753 79999999 88 599999999 333 566899999998643
No 87
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.64 E-value=3.3e-08 Score=93.04 Aligned_cols=49 Identities=27% Similarity=0.807 Sum_probs=40.0
Q ss_pred cccccccccccccCCCCEEecCC--CC-CcccccccccccccCCcccCCCCCCCCCCccccccccCC
Q 047726 28 TTSLCGACGVAAEAEGDVVVCDA--CE-RGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKNG 91 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdLlcCD~--C~-R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~g 91 (1297)
+..+| +|+.+.. |+||+||. |+ .+||+.|++ +.. .|.+.||||.|....
T Consensus 35 e~~yC-iC~~~~~--g~MI~CD~~dC~~~WfH~~CVg--------l~~----~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACVG--------LTT----KPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC--SCCCCCSCSSCSCCCCCSTTTT--------CSS----CCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC--CCEeEecCCCCCCCCEecccCC--------cCc----CCCCCEECcCccCcC
Confidence 46889 9999764 69999999 77 699999999 333 556899999998643
No 88
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.64 E-value=1.8e-08 Score=114.07 Aligned_cols=96 Identities=16% Similarity=0.059 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhCCC--chhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHHH
Q 047726 1076 KQCRIVLRQAAAADD--EKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFW 1153 (1297)
Q Consensus 1076 KRCr~VLr~l~ss~~--s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreVW 1153 (1297)
.-|..+|..+..... +++|..|++ ..++|+|+.+|++||||+||..|+ ..|..+...|..|++++|
T Consensus 81 ~~~~~~l~~l~~~~~~~~~~F~~p~~----------~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~ 148 (361)
T 2r10_A 81 RFISFTLDVLIDKYKDIFKDFIKLPS----------RKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLT 148 (361)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSSCCC----------TTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHhcCCCC----------cccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHH
Confidence 468888888865444 355666643 245899999999999999999998 455546788999999999
Q ss_pred hhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1154 NNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1154 sN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
+||.+||..++.++.+|..|...|+..+.+
T Consensus 149 ~Na~~yN~~~s~i~~~a~~l~~~~~~~~~k 178 (361)
T 2r10_A 149 KNCQAYNEYDSLIVKNSMQVVMLIEFEVLK 178 (361)
T ss_dssp HHHHHHBCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999987654
No 89
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.62 E-value=1.6e-08 Score=97.55 Aligned_cols=48 Identities=38% Similarity=0.927 Sum_probs=42.9
Q ss_pred cccccccccccCCCCCCeEEec--CCCCCCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1224 WDEGICKVCGVDKDDDSVLLCD--TCDAEYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1224 w~~~~CkVCg~~~d~~~LLLCD--~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
.++++|.+|+ ++++||+|| .|+++||++|+. |.++|+|+||||.|...
T Consensus 13 ~~~~~C~~C~---~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 13 MHEDYCFQCG---DGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp SSCSSCTTTC---CCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCCCCCCcCC---CCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 4567899998 678999999 899999999999 89999999999988643
No 90
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.59 E-value=2.9e-08 Score=93.89 Aligned_cols=49 Identities=27% Similarity=0.771 Sum_probs=39.3
Q ss_pred cccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 28 TTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+...| +|+.++. +|.||+||.|+++||+.|++ |+... +| +.|+|+.|..
T Consensus 27 d~vrC-iC~~~~~-~~~mi~Cd~C~~w~H~~C~~------~~~~~----~p-~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHD-DGYMICCDKCSVWQHIDCMG------IDRQH----IP-DTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSC-SSCEEEBTTTCBEEETTTTT------CCTTS----CC-SSBCCTTTSS
T ss_pred CCEEe-ECCCccC-CCcEEEcCCCCCcCcCcCCC------CCccC----CC-CCEECCCCcC
Confidence 34567 7988765 56999999999999999999 55544 44 4899999974
No 91
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.57 E-value=2.2e-08 Score=95.64 Aligned_cols=54 Identities=22% Similarity=0.577 Sum_probs=42.7
Q ss_pred CCcccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccc
Q 047726 24 SSSETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCV 88 (1297)
Q Consensus 24 s~~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~ 88 (1297)
++..++++|.+|+.+... .+||+||+|+++||+.|++ |+... .+.+.|+|++|.
T Consensus 2 s~~~~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~------~~~~~----~~~~~W~C~~C~ 55 (111)
T 2ysm_A 2 SSGSSGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLD------IAVTP----LKRAGWQCPECK 55 (111)
T ss_dssp CCCCCCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTT------CCCCT----TTSTTCCCTTTC
T ss_pred CCCCCCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhC------Ccccc----ccccCccCCcCC
Confidence 457789999999993322 1459999999999999999 44433 567999999986
No 92
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.57 E-value=3.9e-08 Score=93.06 Aligned_cols=50 Identities=32% Similarity=0.779 Sum_probs=44.7
Q ss_pred ccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1227 GICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1227 ~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
..| +|+...+.+.||+||.|+..||+.|+.|++..+|+ .|+|+.|..+..
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~~~~~ 78 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQPRNL 78 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTSSSCC
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCcCCCC
Confidence 357 89988888999999999999999999999999996 899999987643
No 93
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.54 E-value=2.5e-08 Score=86.85 Aligned_cols=48 Identities=27% Similarity=0.821 Sum_probs=39.0
Q ss_pred ccccccccccccccCCCCEEecCC--CC-CcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 27 ETTSLCGACGVAAEAEGDVVVCDA--CE-RGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~GdLlcCD~--C~-R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.+..+| +|++++ .|++|.||+ |+ ++||+.|++ +.. .|.+.||||.|..
T Consensus 8 ~e~~~C-~C~~~~--~g~mi~CD~cdC~~~wfH~~Cvg--------l~~----~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVS--YGEMIGCDNPDCSIEWFHFACVG--------LTT----KPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEEC--CSEEEECSCTTCSSCEEETGGGT--------CSS----CCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcC--CCCEEEeCCCCCCCceEehhcCC--------CCc----CCCCCEECcCccC
Confidence 346788 899975 379999999 66 799999999 333 5679999999975
No 94
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.54 E-value=2.7e-08 Score=86.51 Aligned_cols=48 Identities=27% Similarity=0.802 Sum_probs=39.1
Q ss_pred ccccccccccccccCCCCEEecCC--CC-CcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 27 ETTSLCGACGVAAEAEGDVVVCDA--CE-RGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~GdLlcCD~--C~-R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.++.+| +|++++ .|+||.||. |+ .+||+.|++ +.. .|.+.||||.|..
T Consensus 7 ~e~~yC-~C~~~~--~g~mi~CD~~~C~~~wfH~~Cvg--------l~~----~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVS--YGEMIGCDNPDCPIEWFHFACVD--------LTT----KPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEEC--CSEEEECSCTTCSSCEEETGGGT--------CSS----CCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCC--CCCeeEeeCCCCCCCCEecccCC--------ccc----CCCCCEECcCccC
Confidence 356789 999975 479999999 88 599999999 333 5668999999975
No 95
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=98.53 E-value=3.9e-08 Score=109.52 Aligned_cols=97 Identities=15% Similarity=0.045 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhCC--CchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHHH
Q 047726 1075 MKQCRIVLRQAAAAD--DEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREF 1152 (1297)
Q Consensus 1075 mKRCr~VLr~l~ss~--~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVreV 1152 (1297)
-.-|+.+|+.+.... -+++|..| ++ ..++|+|+.+|++||||+||+.|+ ..|..+...|..|++++
T Consensus 30 ~~~~~~~L~~~~~~~r~~~~~F~~p--------~~--~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li 97 (311)
T 2r0y_A 30 NRFISFTLDVLIDKYKDIFKDFIKL--------PS--RKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELL 97 (311)
T ss_dssp HHHHHHHHHHHHHHSHHHHGGGSSC--------CC--TTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchhHHhcCC--------CC--cccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHH
Confidence 344556666665422 13344444 33 346899999999999999999998 55554678899999999
Q ss_pred HhhhhhccCCCchHHHHHHHhhhhhhhhhhh
Q 047726 1153 WNNVRTAFGDQPDFVDLAEKLSRNFESLYEN 1183 (1297)
Q Consensus 1153 WsN~~Tyn~dg~dVv~LAEsLSq~FESrYek 1183 (1297)
|+||.+||..++.++..|..|.+.|+..+.+
T Consensus 98 ~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~k 128 (311)
T 2r0y_A 98 TKNCQAYNEYDSLIVKNSMQVVMLIEFEVLK 128 (311)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999887654
No 96
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=98.52 E-value=6.5e-08 Score=86.92 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=43.2
Q ss_pred ccccCCCeEEEEeeccCcc---eeEEEEECCCCCcccchhhhhhhhcccccC
Q 047726 229 HGVLEEGWSVELRHSTNSY---ELYAVYCAPDGRTFDSMSEVACYLGLTSSY 277 (1297)
Q Consensus 229 ~g~le~gwrve~k~~~~~~---~~~~~y~~pdg~~f~s~~e~a~~lgl~~~~ 277 (1297)
|=+|..||+.|+++|.+|. ...+||.+|.|++|+|+.|||+||+.++.+
T Consensus 3 ~~plp~GW~R~~~~R~~G~s~gk~DvyY~sP~Gkk~RSk~ev~~yL~~~~~~ 54 (69)
T 3vxv_A 3 HKPVPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGET 54 (69)
T ss_dssp -CCSCTTCEEEEEECCSSTTTTCEEEEEECTTSCEECSHHHHHHHHHHHCCC
T ss_pred CCcCCCCCEEEEEEeccCCCCCcceEEEEcCCCCEeeCHHHHHHHHHhCCCC
Confidence 4589999999999997663 678999999999999999999999998754
No 97
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.52 E-value=1.2e-08 Score=101.41 Aligned_cols=52 Identities=21% Similarity=0.569 Sum_probs=42.6
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcc-----cCCCCCCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQ-----QQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl-----~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+.++++|++|+. +|+|+|||.|+|+||..|+. |++ .. ...+.++|+|..|..
T Consensus 54 Dg~~~~C~vC~d----GG~LlcCd~Cpr~Fc~~Cl~------~~lg~~~l~~--i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAE----GGNLICCDFCHNAFCKKCIL------RNLGRRELST--IMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCC----CSEEEECSSSSCEEEHHHHH------HHTCHHHHHH--HTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCC----CCeeEecCCCchhhhHHHhC------CCcchhHHHH--hccCCCCeEcCCcCC
Confidence 345789999999 99999999999999999999 442 22 013789999999974
No 98
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.52 E-value=3.5e-08 Score=86.64 Aligned_cols=48 Identities=25% Similarity=0.748 Sum_probs=38.8
Q ss_pred ccccccccccccccCCCCEEecCC--CC-CcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 27 ETTSLCGACGVAAEAEGDVVVCDA--CE-RGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~GdLlcCD~--C~-R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.+..+| +|+.++ .|++|.||. |+ ++||+.|++ +.. .|.+.||||.|..
T Consensus 9 ~e~~yC-~C~~~~--~g~MI~CD~c~C~~~WfH~~Cvg--------l~~----~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVS--YGEMIGCDNEQCPIEWFHFSCVS--------LTY----KPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEEC--CSEEEECSCTTCSSCEEETGGGT--------CSS----CCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCC--CCCeeeeeCCCCCcccEecccCC--------cCc----CCCCCEECcCccc
Confidence 346789 899975 469999999 66 999999999 333 5679999999975
No 99
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.48 E-value=1.4e-07 Score=84.92 Aligned_cols=52 Identities=29% Similarity=0.837 Sum_probs=42.8
Q ss_pred CcccccccccccCCCCCCeEEecC--CC-CCCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1223 PWDEGICKVCGVDKDDDSVLLCDT--CD-AEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1223 pw~~~~CkVCg~~~d~~~LLLCD~--CD-~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
+.+..+| +|++..+ +.|+.||. |+ ..||+.|+. |+.+|.|.||||.|.....
T Consensus 13 ~~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 13 PNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TTSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 3445678 8987654 68999999 77 699999999 8899999999999976543
No 100
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.47 E-value=7.5e-08 Score=83.91 Aligned_cols=56 Identities=30% Similarity=0.678 Sum_probs=44.3
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccccC
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKN 90 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~ 90 (1297)
++++.+|.+|+.+...++.+|.||.|++.||..|+++. .. +. ...+.|+|+.|..+
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~-----~~---~~-~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKIT-----PA---RA-EHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCC-----TT---GG-GGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcC-----hh---Hh-cCCCcEECCCCcCc
Confidence 45678999999988777899999999999999999941 11 11 12379999999864
No 101
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.45 E-value=4.6e-08 Score=91.86 Aligned_cols=48 Identities=29% Similarity=0.694 Sum_probs=38.8
Q ss_pred ccccccccccccccCCCCEEecCCCC---CcccccccccccccCCcccCCCCCCCCCCccccc-ccc
Q 047726 27 ETTSLCGACGVAAEAEGDVVVCDACE---RGFHLECAGILMCCHQQQQQQPYHHNLLEWVCAD-CVK 89 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~GdLlcCD~C~---R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~-C~~ 89 (1297)
.+..+| +|+.++. |+||.||.|+ .+||+.|++ +.. .|.+.||||. |..
T Consensus 24 ~~~~yC-iC~~~~~--g~MI~CD~c~C~~eWfH~~CVg--------l~~----~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY--GPMVACDNPACPFEWFHYGCVG--------LKQ----APKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS--SSEECCCSSSCSCSCEETTTSS--------CSS----CTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC--CCEEEecCCCCccccCcCccCC--------CCc----CCCCCccCChhhcc
Confidence 346789 9998654 6999999966 899999999 333 5568999999 975
No 102
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=98.39 E-value=5.7e-07 Score=89.62 Aligned_cols=73 Identities=26% Similarity=0.397 Sum_probs=51.6
Q ss_pred ccCCCeEEEEeeccCc---ceeEEEEECCCCCcccchhhhhhhhcccccC----CCcccccccCCCCCCCCCCCcccCCC
Q 047726 231 VLEEGWSVELRHSTNS---YELYAVYCAPDGRTFDSMSEVACYLGLTSSY----NSLDTRVKTEESPLHDRVPVCKKRKP 303 (1297)
Q Consensus 231 ~le~gwrve~k~~~~~---~~~~~~y~~pdg~~f~s~~e~a~~lgl~~~~----~~~~~~~~~~~s~~~~~~~~~k~rk~ 303 (1297)
.|.+||..|+++|.+| ...++||++|+|++|+|+.||++||+-..++ +..|=-+...+++..|....+++-|.
T Consensus 37 ~LP~GWkRe~~~RksG~Sagk~DVYY~SP~GKkfRSk~Ev~ryL~~~~~~~~~~e~FdF~~~gk~~~s~R~~r~~k~~k~ 116 (133)
T 1ub1_A 37 TLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQRPPKKAKS 116 (133)
T ss_dssp CBTTBCEEEEEECCCSSSCCSEEEEEECTTSCEESSHHHHHHHHTTSCCCSCCGGGCCCCCCCCSCSSCCCCCCCCCCCC
T ss_pred CCCCCCEEEEEEecCCCCCCceeEEEECCCCCeeeCHHHHHHHHHHCCccCCCHhHCccccCCCCCCcccccCCCCCCCC
Confidence 6889999999999886 4577999999999999999999999644432 12333333334444555545444444
No 103
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.37 E-value=7.5e-08 Score=83.87 Aligned_cols=47 Identities=30% Similarity=0.869 Sum_probs=39.4
Q ss_pred cccccccccCCCCCCeEEecC--CC-CCCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1226 EGICKVCGVDKDDDSVLLCDT--CD-AEYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1226 ~~~CkVCg~~~d~~~LLLCD~--CD-~aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
..+| +|++..+ +.|+.||. |+ ..||+.|+. |..+|.|+||||.|..+
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 59 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC-
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccCc
Confidence 4568 8987654 78999999 55 789999999 88999999999999753
No 104
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=98.35 E-value=4.3e-07 Score=82.20 Aligned_cols=44 Identities=30% Similarity=0.490 Sum_probs=40.2
Q ss_pred ccCCCeEEEEeeccCc---ceeEEEEECCCCCcccchhhhhhhhccc
Q 047726 231 VLEEGWSVELRHSTNS---YELYAVYCAPDGRTFDSMSEVACYLGLT 274 (1297)
Q Consensus 231 ~le~gwrve~k~~~~~---~~~~~~y~~pdg~~f~s~~e~a~~lgl~ 274 (1297)
.|..||+.|+++|.+| ....+||.+|.|++|+|+.||++||+..
T Consensus 12 ~Lp~GW~R~~~~R~~g~s~~k~DvyY~sP~Gkr~RS~~ev~~YL~~~ 58 (72)
T 2ky8_A 12 ALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNA 58 (72)
T ss_dssp SSCTTCEEEEEECCSSTTTTCEEEEEECTTCCEEESHHHHHHHHTTS
T ss_pred CCCCCCEEEEEEecCCCCCCceEEEEECCCCCEeEcHHHHHHHHhcC
Confidence 6899999999999877 4678999999999999999999999874
No 105
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.32 E-value=4.9e-07 Score=85.13 Aligned_cols=50 Identities=28% Similarity=0.844 Sum_probs=41.5
Q ss_pred ccccccccccCCCCCCeEEecC--CC-CCCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDT--CD-AEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~--CD-~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
+..+| +|++..+ +.|+.||. |+ ..||+.|+. |..+|.|.||||.|.....
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 34578 9987654 68999999 66 689999999 7899999999999976644
No 106
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.32 E-value=9.6e-08 Score=97.17 Aligned_cols=54 Identities=30% Similarity=0.680 Sum_probs=42.7
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.+++.+| +|+.+...+|.+|+||.|+++||..|+++ +.... ...++|+|+.|..
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~-----~~~~~----~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGI-----LQSEA----ELIDEYVCPQCQS 58 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTC-----CHHHH----TTCSSCCCHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCC-----chhhc----cCccCeecCCCcc
Confidence 3567899 99998877889999999999999999994 11111 3468999999986
No 107
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.31 E-value=9.1e-08 Score=96.43 Aligned_cols=49 Identities=22% Similarity=0.677 Sum_probs=44.0
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCcccccCCCCC-----C--CCCCCccCccCCcc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLV-----R--IPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~-----~--IPeGdWyCP~C~~~ 1276 (1297)
.+++|.+|+ +++.+|+||.|++.||..|+.|||. + .|.|+|+|+.|...
T Consensus 62 ~~d~C~vC~---~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCA---EGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CBCSCSSSC---CCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCeecccC---CCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 456899998 8899999999999999999999996 2 58999999999865
No 108
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.31 E-value=1.3e-07 Score=82.26 Aligned_cols=48 Identities=31% Similarity=0.922 Sum_probs=40.4
Q ss_pred ccccccccccCCCCCCeEEecC--CC-CCCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDT--CD-AEYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~--CD-~aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
+..+| +|++.. .+.|+.||. |+ ..||+.|+. |+.+|.|+||||.|..+
T Consensus 8 e~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHCC
T ss_pred CCcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccCc
Confidence 34578 998765 468999999 77 699999999 88999999999999754
No 109
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.29 E-value=1.8e-07 Score=87.91 Aligned_cols=47 Identities=30% Similarity=0.723 Sum_probs=39.6
Q ss_pred cccccccccCCCCCCeEEecCCC---CCCcccccCCCCCCCCCCCccCcc-CCcc
Q 047726 1226 EGICKVCGVDKDDDSVLLCDTCD---AEYHTYCLEPPLVRIPEGNWYCPS-CVVR 1276 (1297)
Q Consensus 1226 ~~~CkVCg~~~d~~~LLLCD~CD---~aYHl~CL~PPL~~IPeGdWyCP~-C~~~ 1276 (1297)
..+| +|+...+ +.|+.||.|+ ..||+.|+. |..+|.|.||||. |...
T Consensus 26 ~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 26 EVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKEI 76 (90)
T ss_dssp SCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHHH
T ss_pred CcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcch
Confidence 3478 8987654 5799999977 899999999 7899999999999 9743
No 110
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.27 E-value=1.9e-07 Score=82.00 Aligned_cols=48 Identities=29% Similarity=0.785 Sum_probs=39.9
Q ss_pred ccccccccccCCCCCCeEEecCCC---CCCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDTCD---AEYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~CD---~aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
+..+| +|++..+ +.|+.||.|+ ..||+.|+. |+..|.|.||||.|..+
T Consensus 10 e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 34578 9987644 6899999955 899999999 77889999999999764
No 111
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=98.27 E-value=5.5e-07 Score=82.17 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=39.1
Q ss_pred ccCCCeEEEEeeccCc---ceeEEEEECCCCCcccchhhhhhhhcc
Q 047726 231 VLEEGWSVELRHSTNS---YELYAVYCAPDGRTFDSMSEVACYLGL 273 (1297)
Q Consensus 231 ~le~gwrve~k~~~~~---~~~~~~y~~pdg~~f~s~~e~a~~lgl 273 (1297)
.|.+||+.|+++|.+| ....+||.+|.|++|+|+.||++||+-
T Consensus 10 ~LP~GW~Re~~~R~~g~s~gk~DvyY~sP~Gkk~RS~~ev~ryL~~ 55 (75)
T 1d9n_A 10 ALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGP 55 (75)
T ss_dssp TTCSSCEEEECSSSSSCTTCCCCEEEECSSSCEECSTHHHHHHHCT
T ss_pred CCCCCCEEEEEEecCCCCCCceEEEEECCCCCeeecHHHHHHHhcc
Confidence 5889999999999887 457799999999999999999999983
No 112
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.23 E-value=2.3e-07 Score=83.22 Aligned_cols=48 Identities=27% Similarity=0.712 Sum_probs=38.6
Q ss_pred ccccccccccccccCCCCEEecCCCC---CcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 27 ETTSLCGACGVAAEAEGDVVVCDACE---RGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~GdLlcCD~C~---R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.+..+|. |+.++ .|++|.||.|+ ..||+.|++ +.. .|.+.||||.|..
T Consensus 4 ~~~~yC~-C~~~~--~g~MI~CD~cdC~~~WfH~~Cvg--------l~~----~p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 4 GSSGYCI-CNQVS--YGEMVGCDNQDCPIEWFHYGCVG--------LTE----APKGKWYCPQCTA 54 (70)
T ss_dssp SCCCCST-TSCCC--CSSEECCSCTTCSCCCEEHHHHT--------CSS----CCSSCCCCHHHHH
T ss_pred CCCeEEE-cCCCC--CCCEeEeCCCCCCccCCcccccc--------cCc----CCCCCEECCCCCc
Confidence 4567885 99864 46999999975 899999999 333 4678999999986
No 113
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=98.21 E-value=8.6e-07 Score=84.40 Aligned_cols=54 Identities=26% Similarity=0.506 Sum_probs=41.1
Q ss_pred HHHHHHhcc-----ccCCCeEEEEeeccCcc---eeEEEEECCCCCcccchhhhhhhhcccc
Q 047726 222 REFISERHG-----VLEEGWSVELRHSTNSY---ELYAVYCAPDGRTFDSMSEVACYLGLTS 275 (1297)
Q Consensus 222 ~~fi~~~~g-----~le~gwrve~k~~~~~~---~~~~~y~~pdg~~f~s~~e~a~~lgl~~ 275 (1297)
|-+|...+. .|.+||++|+++|.+|. ..++||++|.|++|+|+.||++||.-..
T Consensus 9 r~~i~~~~~~~~~~~lP~GW~re~~~R~~G~s~gk~DvYY~sP~GkkfRSk~ev~ryL~~~g 70 (97)
T 3c2i_A 9 RSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIMYFEKVG 70 (97)
T ss_dssp ------CCCCCCCTTSCTTCEEEEEECCSSTTTTCEEEEEECTTSCEECSHHHHHHHHHHHT
T ss_pred ceeEecCCcccCCCCCCCCCEEEEEEecCCCCCCcceEEEECCCCCEEECHHHHHHHHHHCC
Confidence 345555554 47899999999998863 5779999999999999999999995543
No 114
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.19 E-value=7.6e-07 Score=80.93 Aligned_cols=57 Identities=21% Similarity=0.482 Sum_probs=43.6
Q ss_pred CCcccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccccC
Q 047726 24 SSSETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKN 90 (1297)
Q Consensus 24 s~~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~ 90 (1297)
.......+| +|+.+....+.+|.||.|+..||..|+++.. ... ...+.|+|+.|...
T Consensus 7 ~~~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~-----~~~----~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 7 GMALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEE-----ENA----VDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCH-----HHH----TTCSBBCCTTTTTT
T ss_pred CccCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCccc-----ccc----cCCCeEECCCcccc
Confidence 334456788 9999887778999999999999999999511 111 23479999999863
No 115
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=98.16 E-value=3.5e-07 Score=81.06 Aligned_cols=60 Identities=25% Similarity=0.652 Sum_probs=41.7
Q ss_pred CcccccccccccccccCCCCEEecC-CCCCcccccccccccccCCcccCCCCCCCCCCccccccc
Q 047726 25 SSETTSLCGACGVAAEAEGDVVVCD-ACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCV 88 (1297)
Q Consensus 25 ~~e~d~~C~vCg~~e~~~GdLlcCD-~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~ 88 (1297)
+++....|.+|+++..++..+|.|| .|.+.||..|+++....---+.. .|.+.|+|+.|.
T Consensus 4 ~~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~----e~~~~w~C~~C~ 64 (65)
T 2vpb_A 4 SSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTA----EASAVWGCDTCM 64 (65)
T ss_dssp -----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHH----CTTEEECCHHHH
T ss_pred CCCCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhc----cCCCcEECcCcc
Confidence 3566788999999987777999999 99999999999951100000111 366799999996
No 116
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.11 E-value=1.6e-06 Score=77.64 Aligned_cols=52 Identities=23% Similarity=0.603 Sum_probs=40.0
Q ss_pred cccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccccC
Q 047726 28 TTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKN 90 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~ 90 (1297)
...+| +|+.+...+..+|.||.|.+.||..|+++ .... ...+.|+|+.|..+
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~------~~~~----~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGI------NNAD----ALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTC------CTTS----CCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeecc------Cccc----cCCCcEECCCccCC
Confidence 35789 69997665557999999999999999994 1111 23479999999863
No 117
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.00 E-value=5e-07 Score=89.85 Aligned_cols=50 Identities=24% Similarity=0.704 Sum_probs=43.7
Q ss_pred cccccccccccCCCCCCeEEecCCCCCCcccccCCCC-----CCC--CCCCccCccCCcc
Q 047726 1224 WDEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPL-----VRI--PEGNWYCPSCVVR 1276 (1297)
Q Consensus 1224 w~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL-----~~I--PeGdWyCP~C~~~ 1276 (1297)
..+++|.+|+ +++++++||.|+++||..|+.|++ .++ |.++|+|+.|...
T Consensus 55 g~~~~C~vC~---dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCA---EGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTC---CCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecC---CCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3456899998 889999999999999999999985 355 8999999999765
No 118
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=98.00 E-value=1.7e-06 Score=83.00 Aligned_cols=57 Identities=28% Similarity=0.731 Sum_probs=41.8
Q ss_pred cccccccccccCCCCEEecC-CCCCcccccccccccccCCcccCCCCCCCCCCccccccccC
Q 047726 30 SLCGACGVAAEAEGDVVVCD-ACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKN 90 (1297)
Q Consensus 30 ~~C~vCg~~e~~~GdLlcCD-~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~ 90 (1297)
..|.+|+++....++++.|| .|++.||..|+++....-..+.. .|++.|+||.|...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~----~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTT----EASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHH----CTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhcc----CCCCCEECccccCc
Confidence 57999999876778999998 99999999999951100000111 35689999999863
No 119
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.99 E-value=4.7e-06 Score=75.78 Aligned_cols=53 Identities=19% Similarity=0.496 Sum_probs=40.2
Q ss_pred cccccccccccccCCCCEEecC--CCCCcccccccccccccCCcccCCCC---CCCCCCccccccccC
Q 047726 28 TTSLCGACGVAAEAEGDVVVCD--ACERGFHLECAGILMCCHQQQQQQPY---HHNLLEWVCADCVKN 90 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdLlcCD--~C~R~FHl~Cl~v~~~~~Ppl~~~p~---~~p~~~W~Cp~C~~~ 90 (1297)
...+| +|+.++ ..|.+|.|| .|...||..|+++ ...+. ....+.|||+.|...
T Consensus 15 ~~~~C-iC~~~~-~~g~MI~CD~~~C~~W~H~~CVgi--------~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSL-ETDSMIQCEDPRCHVWQHVGCVIL--------PDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCC-CCSCEEECSSTTTCCEEEHHHHSC--------CCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcC-CCCCEEEECCccCCccccCEEEcc--------ccccccccccCCCCEECCCCCcc
Confidence 46889 899985 456999999 9999999999994 11111 023478999999863
No 120
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.93 E-value=5.2e-06 Score=74.09 Aligned_cols=50 Identities=24% Similarity=0.560 Sum_probs=39.5
Q ss_pred ccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 27 ETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.+..+| +|+.+.. ++.+|.||.|...||..|+++ .... . .+.|+|+.|..
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi------~~~~----~-~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKI------RKSN----V-PEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTC------CTTS----C-CSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCc------Cccc----C-CCcEECCCCCC
Confidence 446889 9999776 557999999999999999994 1111 2 37999999975
No 121
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.91 E-value=2.6e-06 Score=76.80 Aligned_cols=55 Identities=25% Similarity=0.648 Sum_probs=39.7
Q ss_pred cccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 28 TTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+..+| +|+.+.. ++.+|.||.|+..||..|+++.. .+... .....+.|+|+.|..
T Consensus 15 ~~~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~---~~~~~--l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 15 NALYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISE---ARGRL--LERNGEDYICPNCTI 69 (76)
T ss_dssp TCCCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCH---HHHHH--HHHHTCCCCCHHHHH
T ss_pred CCCEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccch---hhhhh--ccCCCCeEECcCCcC
Confidence 35789 8999876 55999999999999999999411 00000 001357999999985
No 122
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.84 E-value=1.1e-05 Score=71.63 Aligned_cols=56 Identities=20% Similarity=0.427 Sum_probs=39.9
Q ss_pred cccccccccccccccCCCCEEecCC--CCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDA--CERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~--C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+++...| +||.++. .|.+|.||+ |...||..|+++.. .+... ....+.|||+.|..
T Consensus 7 ~e~~v~C-~C~~~~~-~g~mI~CD~~~C~~W~H~~Cvgi~~---~~~~~---~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 7 PEAKVRC-ICSSTMV-NDSMIQCEDQRCQVWQHLNCVLIPD---KPGES---AEVPPVFYCELCRL 64 (68)
T ss_dssp SSCEECC-TTCCCSC-CSCEEECSCTTTCEEEETTTSCCCS---STTSC---CCCCSSCCCHHHHH
T ss_pred CCCCEEe-ECCCCcC-CCCEEEECCCCCCCeEchhhCCCCc---ccccc---cCCCCcEECcCccC
Confidence 3445788 7998665 569999995 99999999999522 11111 13346899999974
No 123
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=97.81 E-value=3e-05 Score=81.02 Aligned_cols=89 Identities=17% Similarity=0.229 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
..+....+.||+.|..+..+.+|.+. .+++||||.+|..|+..|.|. +...|.+||++
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~y---------------------~~k~PmDL~~i~kKl~~~~Y~-s~~eF~~Dv~l 131 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLRY---------------------RQQQPLDLEGVKRKMDQGNYT-SVLEFSDDIVK 131 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHTC---------------------CC--CCSHHHHHHHHHTTCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccHhhhhh---------------------hhcCCccHHHHHHHHhcCCCC-CHHHHHHHHHH
Confidence 44666678999999999888888663 138999999999999999999 88899999999
Q ss_pred HHhhhhhccCCCchHHHHHHHhhhhhhhhhh
Q 047726 1152 FWNNVRTAFGDQPDFVDLAEKLSRNFESLYE 1182 (1297)
Q Consensus 1152 VWsN~~Tyn~dg~dVv~LAEsLSq~FESrYe 1182 (1297)
|++|+..++.+.+++..+...|...|+.+.+
T Consensus 132 If~n~~~~~~~~~e~~~ag~~l~~~f~~~l~ 162 (183)
T 3lqh_A 132 IIQAAINSDGGQPEIKKANSMVKSFFIRQME 162 (183)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCChhhhhhhhHHHHHHHHHHH
Confidence 9999999999999998888888887776655
No 124
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=97.79 E-value=6.6e-05 Score=76.21 Aligned_cols=104 Identities=15% Similarity=0.185 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726 1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus 1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
..+-..+..++..++...+.. -+.+.-+|+..++.. ++|+. ++||+|.+|..++..|.|. +.+.|.+|+.+
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~--GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~Y~-sld~f~~D~~l 76 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDE--GRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNRYR-RLDLFQEHMFE 76 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTT--SCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCC--CCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCCCC-CHHHHHHHHHH
Confidence 456666777888888654432 122223344444433 46776 8999999999999999999 88999999999
Q ss_pred HHhhhhhccCCCchHHHHHHHhhhhhhhhhhhh
Q 047726 1152 FWNNVRTAFGDQPDFVDLAEKLSRNFESLYENE 1184 (1297)
Q Consensus 1152 VWsN~~Tyn~dg~dVv~LAEsLSq~FESrYekq 1184 (1297)
+|+|+++||..++.|+.-|..|.+.|...+.+-
T Consensus 77 mf~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL 109 (147)
T 3iu6_A 77 VLERARRMNRTDSEIYEDAVELQQFFIKIRDEL 109 (147)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888763
No 125
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.78 E-value=6.3e-06 Score=74.35 Aligned_cols=52 Identities=25% Similarity=0.632 Sum_probs=39.9
Q ss_pred cccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 28 TTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
...+| +|+.+...++.+|.||.|...||..|+++.. . +. ...+.|+|+.|..
T Consensus 9 ~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~-----~---~~-~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 9 VPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEE-----E---EA-PDIDIYHCPNCEK 60 (75)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCT-----T---TG-GGBSSCCCHHHHH
T ss_pred CeeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccc-----c---cc-CCCCEEECCCCcc
Confidence 34677 8999877777999999999999999999411 1 10 2236899999985
No 126
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.76 E-value=1.2e-05 Score=71.80 Aligned_cols=50 Identities=18% Similarity=0.440 Sum_probs=42.3
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
+..+| +|++..+++.|+.||.|+..||..|+......+| ..|+|+.|...
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~s 67 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRDS 67 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHHTC
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCCCC
Confidence 34478 9998878778999999999999999997766666 59999999754
No 127
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.74 E-value=7.9e-06 Score=76.01 Aligned_cols=63 Identities=21% Similarity=0.454 Sum_probs=43.2
Q ss_pred CcccccccccccccccCCCCEEecCCCCCccccccccc-cccc-CCcccCCCCCCCCCCcccccccc
Q 047726 25 SSETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGI-LMCC-HQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 25 ~~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v-~~~~-~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
...+|++|.||..- ..++++.|.-|.|+||..|+.. ..+- +-.+..--...+...|.|+.|..
T Consensus 11 ~~~~D~~C~VC~~~--t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 11 PVVNDEMCDVCEVW--TAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCCSCCCTTTCCC--CSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCCCcccCccccc--cccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 34579999999962 2669999999999999999982 1100 00011111236788999999974
No 128
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.72 E-value=8.9e-06 Score=73.05 Aligned_cols=48 Identities=33% Similarity=0.882 Sum_probs=39.4
Q ss_pred cccccccccCCCCCCeEEecCCC---CCCcccccCCCCCCCCCCCccCccCCccc
Q 047726 1226 EGICKVCGVDKDDDSVLLCDTCD---AEYHTYCLEPPLVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1226 ~~~CkVCg~~~d~~~LLLCD~CD---~aYHl~CL~PPL~~IPeGdWyCP~C~~~~ 1277 (1297)
..+| +|++.. .+.|+.||.|+ ..||+.|+. |...|.+.||||.|....
T Consensus 6 ~~yC-~C~~~~-~g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 6 SGYC-ICNQVS-YGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCS-TTSCCC-CSSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHHH
T ss_pred CeEE-EcCCCC-CCCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCccc
Confidence 3467 588764 45999999986 789999999 678899999999997654
No 129
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.70 E-value=6.7e-06 Score=69.54 Aligned_cols=48 Identities=25% Similarity=0.637 Sum_probs=37.6
Q ss_pred ccccccccccCCCCEEecC-CCCCcccccccccccccCCcccCCCCCCCCCCccccccc
Q 047726 31 LCGACGVAAEAEGDVVVCD-ACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCV 88 (1297)
Q Consensus 31 ~C~vCg~~e~~~GdLlcCD-~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~ 88 (1297)
.|-+|+.+...++.+|.|| .|++.||..|+++.. . + ...+.|+|+.|.
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~-----~---~--~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSP-----E---M--AENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCH-----H---H--HHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCc-----c---c--cCCCCEECCCCC
Confidence 4789999987777899999 899999999999411 1 1 123789999994
No 130
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.55 E-value=3.6e-05 Score=65.02 Aligned_cols=47 Identities=26% Similarity=0.600 Sum_probs=36.5
Q ss_pred cccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 30 SLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 30 ~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.+| +|+.+.. ++.+|.||.|...||..|+++ .... . .+.|+|+.|..
T Consensus 5 ~~C-~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi------~~~~----~-~~~~~C~~C~~ 51 (52)
T 3o7a_A 5 VTC-FCMKPFA-GRPMIECNECHTWIHLSCAKI------RKSN----V-PEVFVCQKCRD 51 (52)
T ss_dssp BCS-TTCCBCT-TCCEEECTTTCCEEETTTTTC------CGGG----C-CSSCCCHHHHT
T ss_pred eEE-EeCCcCC-CCCEEEcCCCCccccccccCC------Cccc----C-CCcEECcCCCC
Confidence 455 6998766 669999999999999999994 1111 2 37999999974
No 131
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.53 E-value=3.3e-05 Score=67.25 Aligned_cols=53 Identities=28% Similarity=0.696 Sum_probs=41.6
Q ss_pred cccccccccCCC-CCCeEEecCCCCCCcccccCCCCCCCC-CCCccCccCCcccc
Q 047726 1226 EGICKVCGVDKD-DDSVLLCDTCDAEYHTYCLEPPLVRIP-EGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1226 ~~~CkVCg~~~d-~~~LLLCD~CD~aYHl~CL~PPL~~IP-eGdWyCP~C~~~~~ 1278 (1297)
..+|.+|++..+ .+.|+.||.|+..||..|+........ ...|+|+.|..+..
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~ 60 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence 457999998764 578999999999999999986544332 26899999987643
No 132
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.49 E-value=3.6e-05 Score=65.00 Aligned_cols=50 Identities=22% Similarity=0.567 Sum_probs=41.0
Q ss_pred cccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCc
Q 047726 1224 WDEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVV 1275 (1297)
Q Consensus 1224 w~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~ 1275 (1297)
|+.-+| +|++..+++.|+.||.|+.-||..|+......+| ..|+|+.|..
T Consensus 2 ~d~~~C-~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~~ 51 (52)
T 3o7a_A 2 WDLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 51 (52)
T ss_dssp TTCBCS-TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHHT
T ss_pred CcCeEE-EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCCC
Confidence 444567 7998878789999999999999999997655565 5999999964
No 133
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.44 E-value=4.6e-05 Score=68.18 Aligned_cols=52 Identities=27% Similarity=0.577 Sum_probs=40.1
Q ss_pred ccccccccCCCC-CCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCccccc
Q 047726 1227 GICKVCGVDKDD-DSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNSM 1279 (1297)
Q Consensus 1227 ~~CkVCg~~~d~-~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~~ 1279 (1297)
.+| +|++..+. ..|+.||.|...||..|+...........|+|+.|..+.+.
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 368 79987654 47999999999999999986543223469999999876543
No 134
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=97.41 E-value=3.7e-05 Score=90.48 Aligned_cols=52 Identities=21% Similarity=0.593 Sum_probs=40.7
Q ss_pred cccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 28 TTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+..+| +|+.+...+|.+|.||.|+..||..|+++.. ... ...+.|+|+.|..
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~-----~~~----~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEE-----HHA----VDIDLYHCPNCAV 87 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCG-----GGG----GGEEEBCCHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCc-----ccc----cCCCEEECCCCcC
Confidence 35778 9999887788999999999999999999411 100 1236899999985
No 135
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.31 E-value=4.6e-05 Score=73.09 Aligned_cols=53 Identities=23% Similarity=0.582 Sum_probs=40.8
Q ss_pred ccccccccCC-CCCCeEEec-CCCCCCcccccCCCCC------CCCCCCccCccCCccccc
Q 047726 1227 GICKVCGVDK-DDDSVLLCD-TCDAEYHTYCLEPPLV------RIPEGNWYCPSCVVRNSM 1279 (1297)
Q Consensus 1227 ~~CkVCg~~~-d~~~LLLCD-~CD~aYHl~CL~PPL~------~IPeGdWyCP~C~~~~~~ 1279 (1297)
..|.+|++.. +.+.|+.|| .|+..||..|..-... ..|.+.|+||.|......
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 3699998873 456799998 9999999999983321 147789999999876544
No 136
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.23 E-value=5.7e-05 Score=68.03 Aligned_cols=51 Identities=22% Similarity=0.703 Sum_probs=40.2
Q ss_pred ccccccccCCCCCCeEEecCCCCCCcccccCCCCCC---C--CCCCccCccCCcccc
Q 047726 1227 GICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVR---I--PEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1227 ~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~---I--PeGdWyCP~C~~~~~ 1278 (1297)
.+| +|++..+.+.|+.||.|+..||..|+...... + +...|+|+.|....+
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 468 89988777899999999999999999843221 1 246899999987654
No 137
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.23 E-value=9.8e-05 Score=65.52 Aligned_cols=49 Identities=27% Similarity=0.680 Sum_probs=37.3
Q ss_pred ccccccccCCCCCCeEEecC--CCCCCcccccCCCC---C--CCCCCCccCccCCccc
Q 047726 1227 GICKVCGVDKDDDSVLLCDT--CDAEYHTYCLEPPL---V--RIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1227 ~~CkVCg~~~d~~~LLLCD~--CD~aYHl~CL~PPL---~--~IPeGdWyCP~C~~~~ 1277 (1297)
-.| +|+...+.+.|+.||. |...||..|+.-.- . .+| ..|||+.|+..+
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p-~~~~C~~Cr~~r 66 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVP-PVFYCELCRLSR 66 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCC-SSCCCHHHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCC-CcEECcCccCcc
Confidence 467 8998878889999995 99999999986321 1 123 379999997653
No 138
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.18 E-value=0.00015 Score=65.86 Aligned_cols=52 Identities=29% Similarity=0.702 Sum_probs=40.5
Q ss_pred cccccccccCCCCCCeEEec--CCCCCCcccccCCCCC------CCCCCCccCccCCccccc
Q 047726 1226 EGICKVCGVDKDDDSVLLCD--TCDAEYHTYCLEPPLV------RIPEGNWYCPSCVVRNSM 1279 (1297)
Q Consensus 1226 ~~~CkVCg~~~d~~~LLLCD--~CD~aYHl~CL~PPL~------~IPeGdWyCP~C~~~~~~ 1279 (1297)
..+| +|+...+.+.|+.|| .|+..||..|+.-+-. .+| ..|||+.|......
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~-~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLP-ESFYCEICRLTSGP 75 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSC-SSCCCHHHHHCCSC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCC-CCEECCCCCcccCC
Confidence 3478 899887788999999 9999999999884322 122 58999999876543
No 139
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=97.11 E-value=0.00017 Score=75.42 Aligned_cols=55 Identities=16% Similarity=0.615 Sum_probs=38.0
Q ss_pred cccccccccccCCC---CEEecCCCCCcccccccccccccCCcc--cCCCCCCCCCCcccccccc
Q 047726 30 SLCGACGVAAEAEG---DVVVCDACERGFHLECAGILMCCHQQQ--QQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 30 ~~C~vCg~~e~~~G---dLlcCD~C~R~FHl~Cl~v~~~~~Ppl--~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.+|.+|+++-.++. .+|.||.|++.||..|+++ ... +.....+....|+||.|..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi-----~~~~~e~~~~~pe~~~y~Cp~C~~ 62 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENL-----SDEMYEILSNLPESVAYTCVNCTE 62 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSC-----CHHHHHHHHHSHHHHCCCCTTTCC
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhcccc-----CHHHHHHhhcCCCCCeeECcCCCC
Confidence 57999999766542 4999999999999999994 110 0000001124899999986
No 140
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.04 E-value=0.00019 Score=65.27 Aligned_cols=51 Identities=18% Similarity=0.458 Sum_probs=39.0
Q ss_pred ccccccccCCC-CCCeEEecCCCCCCcccccCCCCCCC-CCCCccCccCCcccc
Q 047726 1227 GICKVCGVDKD-DDSVLLCDTCDAEYHTYCLEPPLVRI-PEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1227 ~~CkVCg~~~d-~~~LLLCD~CD~aYHl~CL~PPL~~I-PeGdWyCP~C~~~~~ 1278 (1297)
-+| +|++..+ .+.|+.||.|+..||..|+.-..... ....|+|+.|....+
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 367 9998764 68899999999999999998432222 135899999987654
No 141
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=97.02 E-value=9.1e-05 Score=86.45 Aligned_cols=50 Identities=22% Similarity=0.650 Sum_probs=39.2
Q ss_pred cccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 30 SLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 30 ~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.+| +|+.+...+|.+|.||.|+..||..|+++. .... ...+.|+|+.|..
T Consensus 6 ~yC-iC~~~~d~~~~MIqCD~C~~WfH~~CVgi~-----~~~~----~~~~~y~C~~C~~ 55 (447)
T 3kv4_A 6 VYC-LCRLPYDVTRFMIECDMCQDWFHGSCVGVE-----EEKA----ADIDLYHCPNCEV 55 (447)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCC-----HHHH----TTEEECCCHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEcCCCCcccccccCCcC-----cccc----cCCCEEECCCCcc
Confidence 455 899988778899999999999999999941 1111 2337899999985
No 142
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=96.98 E-value=0.00022 Score=84.40 Aligned_cols=40 Identities=25% Similarity=0.660 Sum_probs=30.9
Q ss_pred CCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 41 AEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 41 ~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
++..+|+||.|+..||..|+++ ..... ...+.|+||.|..
T Consensus 54 ~~~~mI~CD~C~~WfH~~CVgi-----~~~~a----~~~~~y~Cp~C~~ 93 (528)
T 3pur_A 54 NDFQWIGCDSCQTWYHFLCSGL-----EQFEY----YLYEKFFCPKCVP 93 (528)
T ss_dssp STTSEEECTTTCCEEEGGGTTC-----CGGGT----TTEEECCCTTTHH
T ss_pred cCCCEEECCCCCcCCCCcCCCC-----ChhHh----cCCCeEECcCCcC
Confidence 3448999999999999999995 22211 3458999999986
No 143
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=96.91 E-value=0.00013 Score=64.77 Aligned_cols=46 Identities=26% Similarity=0.809 Sum_probs=38.5
Q ss_pred ccccccccCC-CCCCeEEec-CCCCCCcccccCCCCCC--------CCCCCccCccCC
Q 047726 1227 GICKVCGVDK-DDDSVLLCD-TCDAEYHTYCLEPPLVR--------IPEGNWYCPSCV 1274 (1297)
Q Consensus 1227 ~~CkVCg~~~-d~~~LLLCD-~CD~aYHl~CL~PPL~~--------IPeGdWyCP~C~ 1274 (1297)
..|.+|++.. +...|+.|| .|+.-||..|.. |+. .|.+.|+|+.|.
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg--lt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRICTG--MTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT--CCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhccC--CCHHHHHHhhccCCCcEECcCcc
Confidence 4799999874 456899999 999999999988 443 478899999995
No 144
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=96.72 E-value=0.00028 Score=63.62 Aligned_cols=51 Identities=25% Similarity=0.665 Sum_probs=39.2
Q ss_pred cccccccCCC-CCCeEEecCCCCCCcccccCCCCCCCCC-CCccCccCCccccc
Q 047726 1228 ICKVCGVDKD-DDSVLLCDTCDAEYHTYCLEPPLVRIPE-GNWYCPSCVVRNSM 1279 (1297)
Q Consensus 1228 ~CkVCg~~~d-~~~LLLCD~CD~aYHl~CL~PPL~~IPe-GdWyCP~C~~~~~~ 1279 (1297)
+| +|+...+ .+.|+.||.|+..||..|+.-.-...+. ..|+|+.|....+.
T Consensus 12 yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~ 64 (75)
T 3kqi_A 12 YC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGK 64 (75)
T ss_dssp ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCC
T ss_pred EE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCCC
Confidence 56 8987654 5789999999999999999854443333 57999999876443
No 145
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=96.60 E-value=0.00034 Score=59.12 Aligned_cols=47 Identities=19% Similarity=0.485 Sum_probs=35.3
Q ss_pred cccccccCCC-CCCeEEec-CCCCCCcccccCCCCCCCCCCCccCccCC
Q 047726 1228 ICKVCGVDKD-DDSVLLCD-TCDAEYHTYCLEPPLVRIPEGNWYCPSCV 1274 (1297)
Q Consensus 1228 ~CkVCg~~~d-~~~LLLCD-~CD~aYHl~CL~PPL~~IPeGdWyCP~C~ 1274 (1297)
.|.+|++..+ ++.|+.|| .|+.-||..|+.-.........|+|+.|.
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 3678887764 56799999 89999999999843222223789999995
No 146
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.55 E-value=0.00045 Score=64.52 Aligned_cols=52 Identities=29% Similarity=0.670 Sum_probs=42.8
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCcccccCCC------------CCCCCCCCccCccCCccc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPP------------LVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PP------------L~~IPeGdWyCP~C~~~~ 1277 (1297)
++..|.||..- ..+.++.|..|.+.||..||.++ +...++.-|.|+.|..-.
T Consensus 14 ~D~~C~VC~~~-t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~ 77 (89)
T 1wil_A 14 NDEMCDVCEVW-TAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNIN 77 (89)
T ss_dssp CSCCCTTTCCC-CSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCC
T ss_pred CCcccCccccc-cccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhh
Confidence 56789999643 36788899999999999999987 566788899999995543
No 147
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=95.71 E-value=0.0027 Score=60.89 Aligned_cols=41 Identities=17% Similarity=0.418 Sum_probs=29.7
Q ss_pred CEEecCCCCCcccccccccccccCCcccCCCCCCCCCCccccccccC
Q 047726 44 DVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKN 90 (1297)
Q Consensus 44 dLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~~ 90 (1297)
.|+.||.|+++||..|++ ++....+.....+.|+||.|...
T Consensus 74 ~m~~C~~C~~~~H~~C~~------~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 74 KLMECCICNEIVHPGCLQ------MDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp SCEEETTTCCEECGGGCC------SCCCCEECSSSSSEEECTTTC--
T ss_pred ceEEeeecCCeEECCCCC------CCccccccccCCCCeECCCCcCC
Confidence 589999999999999999 44333222344456999999853
No 148
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=95.48 E-value=0.004 Score=73.97 Aligned_cols=41 Identities=27% Similarity=0.616 Sum_probs=30.8
Q ss_pred CCCeEEecCCCCCCcccccCCCCCCC-CCCCccCccCCcccc
Q 047726 1238 DDSVLLCDTCDAEYHTYCLEPPLVRI-PEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1238 ~~~LLLCD~CD~aYHl~CL~PPL~~I-PeGdWyCP~C~~~~~ 1278 (1297)
+..|+.||.|+.-||..|..-.-... ..+.|+||.|....+
T Consensus 55 ~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~~g 96 (528)
T 3pur_A 55 DFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHTG 96 (528)
T ss_dssp TTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHHHC
T ss_pred CCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCCCC
Confidence 45789999999999999998432222 236899999976543
No 149
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=95.44 E-value=0.0018 Score=76.38 Aligned_cols=51 Identities=25% Similarity=0.609 Sum_probs=38.3
Q ss_pred ccccccccCCC-CCCeEEecCCCCCCcccccCCCCCCCCC-CCccCccCCcccc
Q 047726 1227 GICKVCGVDKD-DDSVLLCDTCDAEYHTYCLEPPLVRIPE-GNWYCPSCVVRNS 1278 (1297)
Q Consensus 1227 ~~CkVCg~~~d-~~~LLLCD~CD~aYHl~CL~PPL~~IPe-GdWyCP~C~~~~~ 1278 (1297)
-+| +|++..+ .+.|+.||.|+.-||..|+.-.-..... +.|+|+.|....+
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 357 9988654 7889999999999999999843222221 5799999976544
No 150
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=95.34 E-value=0.0073 Score=57.88 Aligned_cols=40 Identities=23% Similarity=0.605 Sum_probs=31.3
Q ss_pred CCCeEEecCCCCCCcccccCCCCCCCCCC----CccCccCCccc
Q 047726 1238 DDSVLLCDTCDAEYHTYCLEPPLVRIPEG----NWYCPSCVVRN 1277 (1297)
Q Consensus 1238 ~~~LLLCD~CD~aYHl~CL~PPL~~IPeG----dWyCP~C~~~~ 1277 (1297)
+..|+.|+.|+..||..|+.++.+.++.. .|+||.|....
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC---
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCC
Confidence 45689999999999999999987655544 49999998753
No 151
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=93.22 E-value=0.007 Score=70.87 Aligned_cols=51 Identities=22% Similarity=0.502 Sum_probs=37.7
Q ss_pred ccccccCCC-CCCeEEecCCCCCCcccccCCCCCCCC-CCCccCccCCccccc
Q 047726 1229 CKVCGVDKD-DDSVLLCDTCDAEYHTYCLEPPLVRIP-EGNWYCPSCVVRNSM 1279 (1297)
Q Consensus 1229 CkVCg~~~d-~~~LLLCD~CD~aYHl~CL~PPL~~IP-eGdWyCP~C~~~~~~ 1279 (1297)
..+|++..+ .+.|+.||.|+.-||..|+.-.-...+ .+.|+|+.|....+.
T Consensus 7 yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~ 59 (447)
T 3kv4_A 7 YCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGP 59 (447)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCC
T ss_pred EEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCC
Confidence 348987654 688999999999999999983322222 257999999766443
No 152
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=93.00 E-value=0.016 Score=59.61 Aligned_cols=53 Identities=28% Similarity=0.598 Sum_probs=41.5
Q ss_pred ccccccccccccCCCCEEecC--CCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCD--ACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD--~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+.+|.+|+. +|+|++|| .|+|+|=..|+...+- +-.+.. ....+.|.|=-|..
T Consensus 79 ~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG-~~~~~~---i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 79 QSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVG-PGAAQA---AIKEDPWNCYMCGH 133 (159)
T ss_dssp BSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTC-TTHHHH---HHTSSSCCCTTTCS
T ss_pred cceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcC-HhHHHH---HhccCCCEEEecCC
Confidence 689999999 99999999 7999999999985431 011211 25679999999984
No 153
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=91.45 E-value=0.053 Score=51.56 Aligned_cols=42 Identities=17% Similarity=0.507 Sum_probs=27.6
Q ss_pred EEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 45 VVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 45 LlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+|.||.|.++||..|+++...-...+.. .+....|.||.|..
T Consensus 2 mi~c~~c~~w~H~~c~~~~~~~~~~l~~---lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLSDEMYEILSN---LPESVAYTCVNCTE 43 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCCHHHHHHHHS---SCTTTTCCSSCCTT
T ss_pred ccccccCCCccCCcccccCHHHHHHHhh---ccccceeeCccccc
Confidence 6899999999999999951000000111 12345799999985
No 154
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=90.45 E-value=0.036 Score=63.86 Aligned_cols=53 Identities=26% Similarity=0.709 Sum_probs=40.9
Q ss_pred ccccccccccccCCCCEEecC--CCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCD--ACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD--~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+.+|..|+. +|+|++|| .|+|+|=..|+...+-+ -.+.. ....+.|.|=.|..
T Consensus 93 ~~yCr~C~~----Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~-~~~~~---i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 93 QSYCSICCS----GETLLICGNPDCTRCYCFECVDSLVGP-GTSGK---VHAMSNWVCYLCLP 147 (386)
T ss_dssp BCSCTTTCC----CSSCEECCSTTCCCEECHHHHHHHTCT-THHHH---HHHCSSCCCTTTSS
T ss_pred cccceEcCC----CCeEEEeCCCCCCcchHHHHHHHhcCh-hHHHH---hhccCCceEEEcCC
Confidence 689999999 99999999 99999999999853310 11111 14568999999985
No 155
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.61 E-value=0.32 Score=44.16 Aligned_cols=38 Identities=18% Similarity=0.550 Sum_probs=29.0
Q ss_pred CCcccccccccccccccCCCCEEecCCCCCccccccccccc
Q 047726 24 SSSETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILM 64 (1297)
Q Consensus 24 s~~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~ 64 (1297)
...+..+.|++|..--..+ +-|-.|...||..|+..++
T Consensus 10 ~y~~~i~~C~IC~~~i~~g---~~C~~C~h~fH~~Ci~kWl 47 (74)
T 2ct0_A 10 TYPDAVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYF 47 (74)
T ss_dssp CCSSSSCBCSSSCCBCSSS---EECSSSCCEECHHHHHHHS
T ss_pred hccCCCCcCcchhhHcccC---CccCCCCchhhHHHHHHHH
Confidence 3344568999999855433 5788999999999998544
No 156
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.22 E-value=0.17 Score=46.24 Aligned_cols=55 Identities=15% Similarity=0.395 Sum_probs=36.1
Q ss_pred CCCcccccccccccccccCCCCEEe---cCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 23 TSSSETTSLCGACGVAAEAEGDVVV---CDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 23 ss~~e~d~~C~vCg~~e~~~GdLlc---CD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+....+++.|.+|......++.++. |.+.-..||..|+..++ .. .+...||.|..
T Consensus 9 s~~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl-----~~-------~~~~~CplCr~ 66 (80)
T 2d8s_A 9 SITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWI-----KS-------SDTRCCELCKY 66 (80)
T ss_dssp CCCCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHH-----HH-------HCCSBCSSSCC
T ss_pred CCCCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHH-----hh-------CCCCCCCCCCC
Confidence 3444557889999975544445542 33445999999999655 11 12457999986
No 157
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=87.91 E-value=0.2 Score=47.61 Aligned_cols=38 Identities=32% Similarity=0.719 Sum_probs=29.2
Q ss_pred CeEEecCCCCCCcccccCCC------CCCCCC-CCccCccCCccc
Q 047726 1240 SVLLCDTCDAEYHTYCLEPP------LVRIPE-GNWYCPSCVVRN 1277 (1297)
Q Consensus 1240 ~LLLCD~CD~aYHl~CL~PP------L~~IPe-GdWyCP~C~~~~ 1277 (1297)
.|+.||.|+..||..|..-. |.++|+ -.|.||.|....
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 47899999999999998732 245563 379999997654
No 158
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=81.51 E-value=1.1 Score=46.96 Aligned_cols=48 Identities=17% Similarity=0.328 Sum_probs=30.9
Q ss_pred ccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCC---CCCccccccccCC
Q 047726 35 CGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHN---LLEWVCADCVKNG 91 (1297)
Q Consensus 35 Cg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p---~~~W~Cp~C~~~g 91 (1297)
||++..-.-..|.|+.|-+.||..|+.. +... ..| .=...|..|...|
T Consensus 10 CG~~~~~~~~mLqC~~C~qWFH~~Cl~~------~~~~---~lp~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 10 EENGRQLGEVELQCGICTKWFTADTFGI------DTSS---CLPFMTNYSFHCNVCHHSG 60 (177)
T ss_dssp -CTTCCTTSCEEECTTTCCEEEGGGGTC------CCTT---CCTTCCSEEEECTTTSTTS
T ss_pred cCCCCCCCceeEeeccccceecHHHhcc------cccC---ccccceeEEEEccccCCCC
Confidence 7774443336999999999999999983 1111 022 1224599998644
No 159
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=80.99 E-value=0.93 Score=36.97 Aligned_cols=49 Identities=22% Similarity=0.523 Sum_probs=34.8
Q ss_pred ccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 27 ETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+++..|.+|...-..+........|...||..|+..++ .. ...||.|..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~------~~--------~~~CP~Cr~ 51 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL------GS--------HSTCPLCRL 51 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT------TT--------CCSCSSSCC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHH------Hc--------CCcCcCCCC
Confidence 45678999998655444566666899999999998332 22 235999975
No 160
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=74.28 E-value=1.4 Score=50.76 Aligned_cols=34 Identities=29% Similarity=0.541 Sum_probs=27.0
Q ss_pred cccccccccccccCCCCE--EecC--CCCCcccccccc
Q 047726 28 TTSLCGACGVAAEAEGDV--VVCD--ACERGFHLECAG 61 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdL--lcCD--~C~R~FHl~Cl~ 61 (1297)
...-|++|-.--...|.+ ..|+ .|...||..|+.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~ 344 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLE 344 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGH
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHH
Confidence 456799999865554555 4788 899999999998
No 161
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=74.23 E-value=3.6 Score=35.84 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=32.2
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
..++..|.+|...-... +.+.--.|...||..|+..++ .. ...||.|..
T Consensus 12 ~~~~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~~------~~--------~~~CP~Cr~ 60 (78)
T 2ect_A 12 VGSGLECPVCKEDYALG-ESVRQLPCNHLFHDSCIVPWL------EQ--------HDSCPVCRK 60 (78)
T ss_dssp SSSSCCCTTTTSCCCTT-SCEEECTTSCEEETTTTHHHH------TT--------TCSCTTTCC
T ss_pred CCCCCCCeeCCccccCC-CCEEEeCCCCeecHHHHHHHH------Hc--------CCcCcCcCC
Confidence 34578899998744333 323222599999999998433 11 135999986
No 162
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=73.10 E-value=2.7 Score=44.13 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=33.3
Q ss_pred cccccccCCC-CCCeEEecCCCCCCcccccCCCCCCCCCCC----ccCccCCcc
Q 047726 1228 ICKVCGVDKD-DDSVLLCDTCDAEYHTYCLEPPLVRIPEGN----WYCPSCVVR 1276 (1297)
Q Consensus 1228 ~CkVCg~~~d-~~~LLLCD~CD~aYHl~CL~PPL~~IPeGd----WyCP~C~~~ 1276 (1297)
+| -||+.++ ...+|.|+.|.+.||..|+..+...+-.++ ..|..|..+
T Consensus 7 yC-YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 7 SV-DEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp -----CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTT
T ss_pred EE-EcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCC
Confidence 45 6887654 557999999999999999986654433334 469999764
No 163
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=72.75 E-value=1.5 Score=35.63 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=34.6
Q ss_pred cccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 28 TTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
++..|.+|...-..+++.+..-.|...||..|+..++ .. ...||.|..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~------~~--------~~~CP~Cr~ 51 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEML------KE--------GYRCPLCSG 51 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHH------HH--------TCCCTTSCC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHH------Hc--------CCcCCCCCC
Confidence 4577999998554445667777899999999998332 11 145999975
No 164
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.03 E-value=2.7 Score=36.31 Aligned_cols=48 Identities=23% Similarity=0.585 Sum_probs=32.9
Q ss_pred ccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 27 ETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
..+..|.+|...-.....+... .|...||..|+..++ .. .-.||.|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~------~~--------~~~CP~Cr~ 60 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWL------EV--------RKVCPLCNM 60 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHH------HH--------CSBCTTTCC
T ss_pred CCCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHH------Hc--------CCcCCCcCc
Confidence 3467899999865444344444 499999999998433 11 115999975
No 165
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=69.88 E-value=1.9 Score=39.36 Aligned_cols=49 Identities=24% Similarity=0.423 Sum_probs=32.8
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.+++..|.+|...-..+ +.+..=.|...||..|+..++ .. .-.||.|..
T Consensus 37 ~~~~~~C~IC~~~~~~~-~~~~~l~C~H~Fh~~Ci~~wl------~~--------~~~CP~Cr~ 85 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKG-DVATELPCHHYFHKPCVSIWL------QK--------SGTCPVCRC 85 (91)
T ss_dssp SSSCSEETTTTEECCTT-CEEEEETTTEEEEHHHHHHHH------TT--------TCBCTTTCC
T ss_pred cCCCCCCcccChhhcCC-CcEEecCCCChHHHHHHHHHH------Hc--------CCcCcCcCc
Confidence 44578899998744333 434333499999999998443 11 125999975
No 166
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=67.21 E-value=3.3 Score=35.32 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=32.6
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
...+..|.+|...-..+ +-+..-.|...||..|+..++ .. ...||.|..
T Consensus 11 ~~~~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~~------~~--------~~~CP~Cr~ 59 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEG-EDVRRLPCMHLFHQVCVDQWL------IT--------NKKCPICRV 59 (69)
T ss_dssp TTCCCSBTTTTBCCCSS-SCEEECTTSCEEEHHHHHHHH------HH--------CSBCTTTCS
T ss_pred CCCCCCCeeCCccccCC-CcEEEeCCCCHHHHHHHHHHH------Hc--------CCCCcCcCc
Confidence 44568899998743323 334445699999999998433 11 124999975
No 167
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=66.64 E-value=1.6 Score=37.19 Aligned_cols=51 Identities=22% Similarity=0.455 Sum_probs=35.7
Q ss_pred CcccccccccccccccC---CCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 25 SSETTSLCGACGVAAEA---EGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 25 ~~e~d~~C~vCg~~e~~---~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
..+++..|.+|...-.. .++.+..-.|...||..|+.-++ ... -.||.|..
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~------~~~--------~~CP~Cr~ 59 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL------KNA--------NTCPTCRK 59 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHH------HHC--------SBCTTTCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHH------HcC--------CCCCCCCC
Confidence 34567889999975322 34667778999999999998332 110 15999976
No 168
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=64.84 E-value=3.3 Score=38.73 Aligned_cols=52 Identities=21% Similarity=0.388 Sum_probs=31.8
Q ss_pred ccccccccccccCCC--------------CEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 29 TSLCGACGVAAEAEG--------------DVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 29 d~~C~vCg~~e~~~G--------------dLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
++.|.+|...-.... ..+..-.|...||..|+..++- .. .....-.||.|..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~-----~~----~~~~~~~CP~CR~ 90 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYC-----NG----NKDGSLQCPSCKT 90 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHH-----HT----CCSSCCBCTTTCC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHH-----cc----cCCCCCcCCCCCC
Confidence 468999987432211 2344567999999999984430 00 0112345999976
No 169
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.85 E-value=1.6 Score=36.81 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=27.5
Q ss_pred cccccccccccccccC---CCCEEecCCCCCccccccccc
Q 047726 26 SETTSLCGACGVAAEA---EGDVVVCDACERGFHLECAGI 62 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~---~GdLlcCD~C~R~FHl~Cl~v 62 (1297)
..++..|.+|...-.. .++.+.--.|...||..|+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~ 51 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD 51 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHH
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHH
Confidence 4457889999984332 245556678999999999983
No 170
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.52 E-value=1.9 Score=37.51 Aligned_cols=49 Identities=20% Similarity=0.522 Sum_probs=33.7
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.+++..|.+|...-.. ++.+..-.|...||..|+..++ .. ...||.|..
T Consensus 20 ~~~~~~C~IC~~~~~~-~~~~~~l~C~H~fh~~Ci~~w~------~~--------~~~CP~Cr~ 68 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFES-RQLLRVLPCNHEFHAKCVDKWL------KA--------NRTCPICRA 68 (75)
T ss_dssp SSSCCEETTTTEECCB-TCEEEEETTTEEEETTHHHHHH------HH--------CSSCTTTCC
T ss_pred cCCCCCCeECCcccCC-CCeEEEECCCCHhHHHHHHHHH------Hc--------CCcCcCcCC
Confidence 3456889999974433 3555555699999999998433 11 125999975
No 171
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.95 E-value=4 Score=36.55 Aligned_cols=50 Identities=28% Similarity=0.595 Sum_probs=32.4
Q ss_pred cccccccccccccccC----------CCC-EEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEA----------EGD-VVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~----------~Gd-LlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
..+++.|++|...-.. +++ ++.--.|...||..|+..++ .. . =.||.|..
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl------~~----~----~~CP~CR~ 72 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWV------KQ----N----NRCPLCQQ 72 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHT------TT----C----CBCTTTCC
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHH------Hh----C----CCCCCcCC
Confidence 3456778888875432 223 44444799999999998443 12 0 15999985
No 172
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=62.89 E-value=3.8 Score=33.25 Aligned_cols=48 Identities=25% Similarity=0.557 Sum_probs=33.2
Q ss_pred ccccccccccCCCC-CCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1225 DEGICKVCGVDKDD-DSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~-~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
+...|.+|...-.. +.......|...||..|+..-+.. ...||.|+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 52 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLT 52 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCE
Confidence 34579999765433 334444569999999999876654 3479999754
No 173
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=61.38 E-value=1.9 Score=44.64 Aligned_cols=49 Identities=24% Similarity=0.668 Sum_probs=38.9
Q ss_pred cccccccccCCCCCCeEEec--CCCCCCcccccCCCCCC------CCCCCccCccCCccc
Q 047726 1226 EGICKVCGVDKDDDSVLLCD--TCDAEYHTYCLEPPLVR------IPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1226 ~~~CkVCg~~~d~~~LLLCD--~CD~aYHl~CL~PPL~~------IPeGdWyCP~C~~~~ 1277 (1297)
+.+|.+|+ +++.+++|| .|.+.|=..|+.-.+.. +....|.|--|.+..
T Consensus 79 ~~yC~wC~---~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 79 QSYCTICC---GGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp BSSCTTTS---CCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred cceeeEec---CCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 34899998 788999999 89999999996543322 556689999998764
No 174
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=57.23 E-value=10 Score=32.95 Aligned_cols=52 Identities=23% Similarity=0.370 Sum_probs=34.4
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcccccc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNSMV 1280 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~~~ 1280 (1297)
+...|.+|...-.....+.--.|...||..|+..-+.. ...||.|+..-...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCccCCc
Confidence 34579999765443333333358999999998865543 24799998775443
No 175
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.22 E-value=6 Score=34.08 Aligned_cols=48 Identities=23% Similarity=0.303 Sum_probs=32.4
Q ss_pred CCcccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 24 SSSETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 24 s~~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+...++..|.+|...-. +-+.- .|...||..|+..++ .. ...||.|..
T Consensus 10 ~~~~~~~~C~IC~~~~~---~~~~~-~CgH~fC~~Ci~~~~------~~--------~~~CP~Cr~ 57 (71)
T 2d8t_A 10 APSLTVPECAICLQTCV---HPVSL-PCKHVFCYLCVKGAS------WL--------GKRCALCRQ 57 (71)
T ss_dssp CSSSSCCBCSSSSSBCS---SEEEE-TTTEEEEHHHHHHCT------TC--------SSBCSSSCC
T ss_pred ccCCCCCCCccCCcccC---CCEEc-cCCCHHHHHHHHHHH------HC--------CCcCcCcCc
Confidence 34456788999998433 32333 599999999998322 11 246999986
No 176
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.11 E-value=8.3 Score=35.10 Aligned_cols=54 Identities=22% Similarity=0.489 Sum_probs=33.2
Q ss_pred cccccccccccCCCC-CCeEE-e--cCCCCCCcccccCCCCCCCCCCCccCccCCccccc
Q 047726 1224 WDEGICKVCGVDKDD-DSVLL-C--DTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNSM 1279 (1297)
Q Consensus 1224 w~~~~CkVCg~~~d~-~~LLL-C--D~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~~ 1279 (1297)
.+...|.||....+. +.+++ | .++-..||..|+..=|.. .+...||.|+..-..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~--~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS--SDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH--HCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh--CCCCCCCCCCCeeec
Confidence 345689999855433 33332 2 222489999999854432 123489999877544
No 177
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.53 E-value=10 Score=34.42 Aligned_cols=52 Identities=25% Similarity=0.420 Sum_probs=36.9
Q ss_pred CcccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1223 PWDEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1223 pw~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
+.....|.+|...-.. -..|..|...||.+|+.-=|..... =.||.|...-.
T Consensus 12 ~~~i~~C~IC~~~i~~--g~~C~~C~h~fH~~Ci~kWl~~~~~--~~CP~Cr~~w~ 63 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSNAE--PRCPHCNDYWP 63 (74)
T ss_dssp SSSSCBCSSSCCBCSS--SEECSSSCCEECHHHHHHHSTTCSS--CCCTTTCSCCC
T ss_pred cCCCCcCcchhhHccc--CCccCCCCchhhHHHHHHHHHhcCC--CCCCCCcCcCC
Confidence 3344689999865543 3578899999999999866654422 36999986533
No 178
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.10 E-value=14 Score=32.49 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=34.3
Q ss_pred CcccccccccccccccCCCC-EEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 25 SSETTSLCGACGVAAEAEGD-VVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 25 ~~e~d~~C~vCg~~e~~~Gd-LlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
..++...|.+|...-..... .+.- .|...||..|+..++ .. ......||.|..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~------~~-----~~~~~~CP~Cr~ 64 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLL------AS-----SINGVRCPFCSK 64 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHH------HH-----CSSCBCCTTTCC
T ss_pred hccCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHH------Hc-----CCCCcCCCCCCC
Confidence 34556889999985443321 3333 699999999998433 11 113456999986
No 179
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.00 E-value=2 Score=37.37 Aligned_cols=50 Identities=28% Similarity=0.653 Sum_probs=34.4
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
+...|.+|...-..+..+..-.|...||..|+..-+.. ...||.|+..-.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCcCC
Confidence 34579999866544544445569999999999865432 237999976543
No 180
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=50.36 E-value=2.2 Score=49.36 Aligned_cols=49 Identities=22% Similarity=0.730 Sum_probs=38.3
Q ss_pred cccccccccCCCCCCeEEec--CCCCCCcccccCCCCC-----C-CCCCCccCccCCccc
Q 047726 1226 EGICKVCGVDKDDDSVLLCD--TCDAEYHTYCLEPPLV-----R-IPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1226 ~~~CkVCg~~~d~~~LLLCD--~CD~aYHl~CL~PPL~-----~-IPeGdWyCP~C~~~~ 1277 (1297)
+.+|.+|+ +++.+++|| .|.+.|=..|+.-.+. . .....|.|--|....
T Consensus 93 ~~yCr~C~---~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 93 QSYCSICC---SGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp BCSCTTTC---CCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred cccceEcC---CCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 34799998 788999999 9999999999764441 1 234579999998774
No 181
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=49.70 E-value=16 Score=31.52 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=33.3
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.+++..|.+|...-... -+ . .|...||..|+.-++ .. ......+.-.||.|..
T Consensus 9 ~~~~~~C~IC~~~~~~p-~~--l-~CgH~fC~~Ci~~~~------~~-~~~~~~~~~~CP~Cr~ 61 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP-LS--L-DCGHSLCRACITVSN------KE-AVTSMGGKSSCPVCGI 61 (79)
T ss_dssp CCCCCEETTTTEECSSC-CC--C-SSSCCCCHHHHSCCC------CC-CSSSCCCCCCCSSSCC
T ss_pred cccCCCCcCCCcccCCe-eE--C-CCCCHHHHHHHHHHH------Hh-cccCCCCCCcCCCCCC
Confidence 34578899999854433 22 2 699999999998322 11 0001134567999986
No 182
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.51 E-value=11 Score=32.76 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=38.5
Q ss_pred CCCCcccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccc-cccc
Q 047726 22 STSSSETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCA-DCVK 89 (1297)
Q Consensus 22 sss~~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp-~C~~ 89 (1297)
|++.+.....|..|+++-..+ +.+. .-++.||..|..=.. +.-++........++.-||. .|..
T Consensus 2 s~~~~~~~~~C~~C~~~I~~~-~~v~--a~~~~~H~~CF~C~~-C~~~L~~~~~~~~~g~~yC~~~cy~ 66 (76)
T 2cu8_A 2 SSGSSGMASKCPKCDKTVYFA-EKVS--SLGKDWHKFCLKCER-CSKTLTPGGHAEHDGKPFCHKPCYA 66 (76)
T ss_dssp CCSCCCCCCBCTTTCCBCCTT-TEEE--ETTEEEETTTCBCSS-SCCBCCTTSCEEETTEEECTTTHHH
T ss_pred ccccCCCCCCCcCCCCEeECC-eEEE--ECCeEeeCCCCCCCC-CCCccCCCceEeECCEEecchHHHH
Confidence 444555568899999976644 6665 457999999987211 12223322233445666777 5754
No 183
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=49.03 E-value=2.1 Score=37.11 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=33.0
Q ss_pred cccccccccccccccCCCCEEe--cCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEAEGDVVV--CDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlc--CD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.++...|.+|....... -+.- |.+.-+.||..|+..++ ...+.+.||.|..
T Consensus 3 ~~~~~~CrIC~~~~~~~-l~~PC~C~gs~~~~H~~Cl~~W~------------~~~~~~~C~~C~~ 55 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNE-RFRACGCTGELENVHRSCLSTWL------------TISRNTACQICGV 55 (60)
T ss_dssp TCSCCEETTTTEECSCC-CCCSCCCSSGGGSCCHHHHHHHH------------HHHTCSBCTTTCC
T ss_pred CCCCCEeEEeecCCCCc-eecCcCCCCchhhhHHHHHHHHH------------HhCCCCccCCCCC
Confidence 34567899998743211 2334 44555699999998654 1124578999975
No 184
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=48.77 E-value=6.2 Score=37.72 Aligned_cols=48 Identities=19% Similarity=0.393 Sum_probs=30.8
Q ss_pred cccccccccccccCC--------------CCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 28 TTSLCGACGVAAEAE--------------GDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~--------------GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+++.|++|...-... +..+.--.|...||..|+..++ .. .-.||.|..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl------~~--------~~~CP~Cr~ 97 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL------KT--------RQVCPLDNR 97 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHH------TT--------CSBCSSSCS
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHH------Hc--------CCcCcCCCC
Confidence 368899997742211 1123334799999999998443 11 124999985
No 185
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=48.57 E-value=3.5 Score=35.15 Aligned_cols=48 Identities=25% Similarity=0.486 Sum_probs=32.7
Q ss_pred cccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCccc
Q 047726 1226 EGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1226 ~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~ 1277 (1297)
...|.+|...-..+.....-.|...||..|+..-+.. ...||.|+..-
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~ 61 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVDI 61 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSBS
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCccc
Confidence 4579999765444444445579999999998754433 23599997664
No 186
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.38 E-value=13 Score=31.96 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=32.2
Q ss_pred ccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 27 ETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+++..|.+|...-. +-+.-..|...||..|+.-++ .. .-.||.|..
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~------~~--------~~~CP~Cr~ 58 (72)
T 2djb_A 13 TPYILCSICKGYLI---DATTITECLHTFCKSCIVRHF------YY--------SNRCPKCNI 58 (72)
T ss_dssp CGGGSCTTTSSCCS---SCEECSSSCCEECHHHHHHHH------HH--------CSSCTTTCC
T ss_pred CCCCCCCCCChHHH---CcCEECCCCCHHHHHHHHHHH------Hc--------CCcCCCcCc
Confidence 45788999988433 335556899999999998322 11 124999986
No 187
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.36 E-value=13 Score=32.23 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=32.4
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
..++..|.+|...-... +.- .|...||..|+..++ .. .....+.-.||.|..
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~------~~--~~~~~~~~~CP~Cr~ 67 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSL-DCGHSFCQACLTANH------KK--SMLDKGESSCPVCRI 67 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCC-SSSCCBCTTHHHHHH------HH--HHHTTSCCCCTTTCC
T ss_pred ccCCCCCCCCCcccCCc---eeC-CCCCHHHHHHHHHHH------HH--hhcCCCCCcCCCCCC
Confidence 34578899999854332 222 699999999998322 00 001123456999986
No 188
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=47.39 E-value=4.4 Score=39.65 Aligned_cols=47 Identities=19% Similarity=0.422 Sum_probs=0.7
Q ss_pred ccccccccccccC-------------CC-CEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 29 TSLCGACGVAAEA-------------EG-DVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 29 d~~C~vCg~~e~~-------------~G-dLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
++.|++|...-.. ++ ..+.--.|...||..|+..++ .. .-.||.|..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl------~~--------~~~CP~Cr~ 108 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL------KT--------RQVCPLDNR 108 (117)
T ss_dssp C--------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHH------Hc--------CCcCCCCCC
Confidence 6899999883221 11 112223699999999999433 22 124999975
No 189
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=46.64 E-value=13 Score=32.18 Aligned_cols=52 Identities=15% Similarity=0.299 Sum_probs=33.3
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
..++..|.+|...-... +.. .|...||..|+..++ ... ....+...||.|..
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~------~~~--~~~~~~~~CP~Cr~ 67 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSA-DCNHSFCRACITLNY------ESN--RNTDGKGNCPVCRV 67 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EEC-TTSCCBCHHHHHHHH------HHS--BCTTSCBCCTTTCC
T ss_pred CccCCCCcCCChhhCcc---eeC-CCCCHHHHHHHHHHH------Hhc--cCCCCCCCCCCCCC
Confidence 34578899998844332 333 599999999998322 110 01234567999986
No 190
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=46.07 E-value=9 Score=41.42 Aligned_cols=31 Identities=23% Similarity=0.621 Sum_probs=26.1
Q ss_pred ccccccccccccCCCCEEecCCCCCccccccccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDACERGFHLECAGI 62 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v 62 (1297)
-..|.+|..--..+ .-|..|...||..|+..
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~ 210 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAK 210 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHH
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHH
Confidence 46799999966654 88999999999999973
No 191
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=44.11 E-value=15 Score=32.06 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=33.1
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
..++..|.+|...-. +-+.-..|...||..|+..++ .. .+.-.||.|..
T Consensus 12 ~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~------~~------~~~~~CP~Cr~ 60 (74)
T 2yur_A 12 IPDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTAL------LE------SDEHTCPTCHQ 60 (74)
T ss_dssp SCGGGSCSSSCCCCT---TCEECSSSCCEECTTHHHHHH------HH------SSSSCCSSSCC
T ss_pred CCCCCCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHH------Hh------cCCCcCCCCCC
Confidence 345788999988443 334455599999999998433 11 12345999986
No 192
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=43.43 E-value=4.4 Score=33.55 Aligned_cols=47 Identities=21% Similarity=0.478 Sum_probs=31.9
Q ss_pred ccccccccccccC---CCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 29 TSLCGACGVAAEA---EGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 29 d~~C~vCg~~e~~---~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+..|.+|...-.. .++.+..-.|...||..|+..++ .. .-.||.|..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~------~~--------~~~CP~Cr~ 52 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL------KN--------ANTCPTCRK 52 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHH------HH--------CSBCTTTCC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHH------Hc--------CCCCCCCCc
Confidence 4679999874332 23555666899999999998332 11 125999975
No 193
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.00 E-value=27 Score=31.52 Aligned_cols=57 Identities=16% Similarity=0.281 Sum_probs=37.5
Q ss_pred ccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
...|..|+.+-... +++ ..-++.||..|..-.. +.-++...+....++.-||..|..
T Consensus 15 ~~~C~~C~~~I~~~-~~v--~a~~~~~H~~CF~C~~-C~~~L~~~~~~~~~g~~yC~~~y~ 71 (91)
T 2d8y_A 15 RETCVECQKTVYPM-ERL--LANQQVFHISCFRCSY-CNNKLSLGTYASLHGRIYCKPHFN 71 (91)
T ss_dssp SCBCTTTCCBCCTT-SEE--ECSSSEEETTTCBCTT-TCCBCCTTTCCCSSSCCCCHHHHH
T ss_pred CCcCccCCCccCCc-eeE--EECCCEECCCCCeeCC-CCCCCCCCCcEeECCEEECHHHHH
Confidence 57899999976644 666 4678999999987211 222343333445667778888864
No 194
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=42.88 E-value=7.2 Score=36.36 Aligned_cols=53 Identities=25% Similarity=0.431 Sum_probs=32.8
Q ss_pred cccccccccCCC---------------CCCeEEecCCCCCCcccccCCCCCCCC-CCCccCccCCcccc
Q 047726 1226 EGICKVCGVDKD---------------DDSVLLCDTCDAEYHTYCLEPPLVRIP-EGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1226 ~~~CkVCg~~~d---------------~~~LLLCD~CD~aYHl~CL~PPL~~IP-eGdWyCP~C~~~~~ 1278 (1297)
+..|.+|...-. +......-.|...||..|+..-|..-. ...-.||.|+..-+
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 357999965421 112333557999999999986552111 23457999976644
No 195
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.51 E-value=15 Score=32.77 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=35.3
Q ss_pred ccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCC--CCCCCcccccccc
Q 047726 27 ETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYH--HNLLEWVCADCVK 89 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~--~p~~~W~Cp~C~~ 89 (1297)
.....|..|+++-... +.+. .-++.||..|..-.. +.-++...... ..++.-||..|..
T Consensus 13 ~~~~~C~~C~~~I~~~-e~v~--a~~~~wH~~CF~C~~-C~~~L~~~~~~~~~~~g~~yC~~~y~ 73 (82)
T 2co8_A 13 GAGDLCALCGEHLYVL-ERLC--VNGHFFHRSCFRCHT-CEATLWPGGYEQHPGDGHFYCLQHLP 73 (82)
T ss_dssp CSSCBCSSSCCBCCTT-TBCC--BTTBCCBTTTCBCSS-SCCBCCTTSEECCTTTCCCEETTTCC
T ss_pred CCCCCCcccCCCcccc-eEEE--ECCCeeCCCcCEEcC-CCCCcCCCceeEeCcCCEEEChHHHH
Confidence 3457899999966543 5554 457899999987211 11223222211 2456777777764
No 196
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=39.49 E-value=5.7 Score=32.12 Aligned_cols=47 Identities=26% Similarity=0.436 Sum_probs=32.5
Q ss_pred cccccccccCC-CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1226 EGICKVCGVDK-DDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1226 ~~~CkVCg~~~-d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
...|.+|...- +.+.....-.|...||..|+..-+..- ..||.|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 52 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGP 52 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCS
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCc
Confidence 45799997653 334455667799999999997543322 469999754
No 197
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=39.46 E-value=11 Score=43.57 Aligned_cols=50 Identities=30% Similarity=0.642 Sum_probs=32.5
Q ss_pred ccccccccCCCC-CCe--EEec--CCCCCCcccccCCCCCCCCCCC-------ccCccCCcc
Q 047726 1227 GICKVCGVDKDD-DSV--LLCD--TCDAEYHTYCLEPPLVRIPEGN-------WYCPSCVVR 1276 (1297)
Q Consensus 1227 ~~CkVCg~~~d~-~~L--LLCD--~CD~aYHl~CL~PPL~~IPeGd-------WyCP~C~~~ 1276 (1297)
..|.+|-....+ +.+ ..|+ .|...||..||..=+.+.+.+. =-||.|+..
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCc
Confidence 469999765444 333 4698 8999999999984332222110 129999765
No 198
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=38.83 E-value=7.2 Score=35.47 Aligned_cols=48 Identities=23% Similarity=0.443 Sum_probs=32.8
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
+...|.+|...-..+.....-.|...||..|+..-+.. .-.||.|+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 86 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCM 86 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCB
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCcc
Confidence 44579999755444444444459999999998865543 2379999765
No 199
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.65 E-value=13 Score=33.11 Aligned_cols=48 Identities=23% Similarity=0.580 Sum_probs=31.4
Q ss_pred cccccccccCCC------------CCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCccc
Q 047726 1226 EGICKVCGVDKD------------DDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1226 ~~~CkVCg~~~d------------~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~ 1277 (1297)
++.|.+|...-+ .+....--.|...||..|+..=|..-. .||.|+..-
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~~ 74 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN----RCPLCQQDW 74 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC----BCTTTCCBC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC----CCCCcCCCc
Confidence 456777765432 122333347999999999987665432 799998663
No 200
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=36.78 E-value=11 Score=31.91 Aligned_cols=45 Identities=18% Similarity=0.373 Sum_probs=30.6
Q ss_pred cccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 28 TTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.+..|.+|...-. +-...-.|...||..|+..++ .. ...||.|..
T Consensus 4 ~~~~C~IC~~~~~---~~~~~~~C~H~fc~~Ci~~~~------~~--------~~~CP~Cr~ 48 (68)
T 1chc_A 4 VAERCPICLEDPS---NYSMALPCLHAFCYVCITRWI------RQ--------NPTCPLCKV 48 (68)
T ss_dssp CCCCCSSCCSCCC---SCEEETTTTEEESTTHHHHHH------HH--------SCSTTTTCC
T ss_pred CCCCCeeCCcccc---CCcEecCCCCeeHHHHHHHHH------hC--------cCcCcCCCh
Confidence 4578999998432 223455799999999998332 11 125999975
No 201
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=36.19 E-value=3.8 Score=35.47 Aligned_cols=48 Identities=25% Similarity=0.540 Sum_probs=32.0
Q ss_pred cccccccccCCCCCCeEEecCCCC---CCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1226 EGICKVCGVDKDDDSVLLCDTCDA---EYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1226 ~~~CkVCg~~~d~~~LLLCD~CD~---aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
...|.+|....++.-++-| .|.. .+|..||..=+.. .+++.|+.|...
T Consensus 6 ~~~CrIC~~~~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~--~~~~~C~~C~~~ 56 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRAC-GCTGELENVHRSCLSTWLTI--SRNTACQICGVV 56 (60)
T ss_dssp CCEETTTTEECSCCCCCSC-CCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCB
T ss_pred CCEeEEeecCCCCceecCc-CCCCchhhhHHHHHHHHHHh--CCCCccCCCCCe
Confidence 4579999765444334454 4544 8999998865532 246789999765
No 202
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=34.11 E-value=47 Score=28.57 Aligned_cols=52 Identities=21% Similarity=0.411 Sum_probs=34.9
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCC---CCCCccCccCCccccc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRI---PEGNWYCPSCVVRNSM 1279 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~I---PeGdWyCP~C~~~~~~ 1279 (1297)
+...|.+|...-..-.++ .|...||..|+.--+..- ..+.-.||.|+.....
T Consensus 11 ~~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSL---DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSSCCCC---SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCCeeEC---CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 345799997554332332 688899999998766542 1235689999877543
No 203
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=32.44 E-value=30 Score=31.34 Aligned_cols=19 Identities=21% Similarity=0.768 Sum_probs=13.9
Q ss_pred CCCCCCCCccCccCCccccc
Q 047726 1260 LVRIPEGNWYCPSCVVRNSM 1279 (1297)
Q Consensus 1260 L~~IPeGdWyCP~C~~~~~~ 1279 (1297)
...+|+ +|.||.|-..+..
T Consensus 34 f~~lPd-dw~CP~Cga~K~~ 52 (70)
T 1dx8_A 34 FVDLSD-SFMCPACRSPKNQ 52 (70)
T ss_dssp GGGSCT-TCBCTTTCCBGGG
T ss_pred hhhCCC-CCcCCCCCCCHHH
Confidence 355775 8999999876543
No 204
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=32.38 E-value=24 Score=29.70 Aligned_cols=18 Identities=39% Similarity=1.248 Sum_probs=13.6
Q ss_pred CCCCCCCCCccCccCCccc
Q 047726 1259 PLVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1259 PL~~IPeGdWyCP~C~~~~ 1277 (1297)
+..++|+ +|.||.|-.++
T Consensus 23 ~f~~lP~-dw~CP~Cg~~k 40 (46)
T 6rxn_A 23 PFDQLPD-DWCCPVCGVSK 40 (46)
T ss_dssp CGGGSCT-TCBCTTTCCBG
T ss_pred chhhCCC-CCcCcCCCCcH
Confidence 3456776 79999998764
No 205
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.27 E-value=52 Score=30.99 Aligned_cols=37 Identities=27% Similarity=0.651 Sum_probs=28.6
Q ss_pred CCeEEecCCCC-CCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1239 DSVLLCDTCDA-EYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1239 ~~LLLCD~CD~-aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
=.|++|..|.. +-|..|.. |... ...|.|..|..-.+
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs~--l~~~-~~~weC~~C~~v~~ 81 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCSS--LRPN-SKKWECNECLPASG 81 (85)
T ss_dssp TBCEECSSSCCCEECSGGGT--CCTT-CSCCCCTTTSCCSS
T ss_pred EEEEeCcccCCchhHHHHhC--CcCC-CCCEECCcCccccC
Confidence 46899999998 59999988 4433 34899999986443
No 206
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=31.82 E-value=34 Score=31.97 Aligned_cols=19 Identities=37% Similarity=0.952 Sum_probs=14.3
Q ss_pred CCCCCCCCCccCccCCcccc
Q 047726 1259 PLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1259 PL~~IPeGdWyCP~C~~~~~ 1278 (1297)
+...+|+ +|.||.|-..+.
T Consensus 53 ~fedlPd-dW~CPvCga~K~ 71 (81)
T 2kn9_A 53 RWDDIPD-DWSCPDCGAAKS 71 (81)
T ss_dssp CTTTSCT-TCCCTTTCCCGG
T ss_pred ChhHCCC-CCcCCCCCCCHH
Confidence 4466776 899999987643
No 207
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=31.78 E-value=43 Score=28.69 Aligned_cols=19 Identities=26% Similarity=0.947 Sum_probs=14.0
Q ss_pred CCCCCCCCCccCccCCcccc
Q 047726 1259 PLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1259 PL~~IPeGdWyCP~C~~~~~ 1278 (1297)
+...+|+ +|.||.|...+.
T Consensus 29 ~f~~lP~-dw~CP~Cg~~K~ 47 (52)
T 1e8j_A 29 KFEDLPD-DWACPVCGASKD 47 (52)
T ss_dssp CTTSSCT-TCCCSSSCCCTT
T ss_pred chHHCCC-CCcCCCCCCcHH
Confidence 3456776 899999987643
No 208
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.51 E-value=28 Score=29.32 Aligned_cols=46 Identities=20% Similarity=0.440 Sum_probs=31.6
Q ss_pred ccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 27 ETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+++..|.+|...-... -+ -.|...||..|+..++ . .....||.|..
T Consensus 13 ~~~~~C~IC~~~~~~p-~~---~~CgH~fC~~Ci~~~~------~-------~~~~~CP~Cr~ 58 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP-KQ---TECGHRFCESCMAALL------S-------SSSPKCTACQE 58 (66)
T ss_dssp CCCEECTTTCCEESSC-CC---CSSSCCCCHHHHHHHH------T-------TSSCCCTTTCC
T ss_pred CcCCCCCCCChHhcCe-eE---CCCCCHHHHHHHHHHH------H-------hCcCCCCCCCc
Confidence 4568899999854433 22 3799999999998433 1 12345999976
No 209
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=31.33 E-value=13 Score=40.31 Aligned_cols=46 Identities=24% Similarity=0.478 Sum_probs=33.3
Q ss_pred ccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1227 GICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1227 ~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
..|.+|....-. -..|..|...||.+|+.--+... +.=-||.|...
T Consensus 181 ~~C~iC~~iv~~--g~~C~~C~~~~H~~C~~~~~~~~--~~~~CP~C~~~ 226 (238)
T 3nw0_A 181 KICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDY 226 (238)
T ss_dssp CBCTTTCSBCSS--CEECSSSCCEECHHHHHHHTTTC--SSCBCTTTCCB
T ss_pred CcCcchhhHHhC--CcccCccChHHHHHHHHHHHHhC--CCCCCCCCCCC
Confidence 479999865543 37799999999999987444333 23469999664
No 210
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.35 E-value=20 Score=30.53 Aligned_cols=49 Identities=18% Similarity=0.386 Sum_probs=32.8
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.+++..|.+|...-. +-+.. .|...||..|+..++ . .....-.||.|..
T Consensus 17 ~~~~~~C~IC~~~~~---~~~~~-~CgH~fC~~Ci~~~~------~-----~~~~~~~CP~Cr~ 65 (73)
T 2ysl_A 17 LQEEVICPICLDILQ---KPVTI-DCGHNFCLKCITQIG------E-----TSCGFFKCPLCKT 65 (73)
T ss_dssp CCCCCBCTTTCSBCS---SEEEC-TTCCEEEHHHHHHHC------S-----SSCSCCCCSSSCC
T ss_pred CccCCEeccCCcccC---CeEEc-CCCChhhHHHHHHHH------H-----cCCCCCCCCCCCC
Confidence 345788999998433 33333 899999999998433 1 1123446999986
No 211
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.16 E-value=9.4 Score=32.88 Aligned_cols=48 Identities=27% Similarity=0.432 Sum_probs=31.6
Q ss_pred cccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCccc
Q 047726 1226 EGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1226 ~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~ 1277 (1297)
...|.+|...-.....+.--.|...||..|+..-+..- -.||.|+..-
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~~ 62 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMPV 62 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCBC
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCccc
Confidence 45799998654433333223589999999988544322 2799997653
No 212
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=30.10 E-value=24 Score=32.80 Aligned_cols=37 Identities=27% Similarity=0.763 Sum_probs=28.3
Q ss_pred CCCCCCcccccccccccCCCCCCeEEecC--CCCCCccccc
Q 047726 1218 EIPKAPWDEGICKVCGVDKDDDSVLLCDT--CDAEYHTYCL 1256 (1297)
Q Consensus 1218 ~lprapw~~~~CkVCg~~~d~~~LLLCD~--CD~aYHl~CL 1256 (1297)
.||+..|.- .|.+|+.. ..+..+.|.. |...||..|-
T Consensus 10 NIp~~R~~l-~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA 48 (87)
T 2lq6_A 10 NIPPARWKL-TCYLCKQK-GVGASIQCHKANCYTAFHVTCA 48 (87)
T ss_dssp CCCCCCCCC-CBTTTTBC-CSSCEEECSCTTTCCEEEHHHH
T ss_pred CCChHHhcC-CCcCCCCC-CCcEeEecCCCCCCCcCcHHHH
Confidence 577777754 69999632 2478888974 9999999994
No 213
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.71 E-value=25 Score=28.51 Aligned_cols=45 Identities=22% Similarity=0.582 Sum_probs=29.3
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccC
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSC 1273 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C 1273 (1297)
+...|.+|...-....++ .|...||..|+..-+... .+.-.||.|
T Consensus 14 ~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVII---ECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCC---SSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred cCCCCccCCcccCccEeC---CCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 345799998654333333 688889999987654432 234578877
No 214
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.23 E-value=35 Score=30.73 Aligned_cols=57 Identities=19% Similarity=0.382 Sum_probs=34.8
Q ss_pred cccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 28 TTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
....|..|+++-. ++.+. .-++.||..|..-.. +.-++........++.-||..|..
T Consensus 24 ~~~~C~~C~~~I~--~~~v~--a~~~~~H~~CF~C~~-C~~~L~~~~f~~~~g~~yC~~cy~ 80 (90)
T 2dar_A 24 RTPMCAHCNQVIR--GPFLV--ALGKSWHPEEFNCAH-CKNTMAYIGFVEEKGALYCELCYE 80 (90)
T ss_dssp CCCBBSSSCCBCC--SCEEE--ETTEEECTTTCBCSS-SCCBCSSSCBEESSSCEECHHHHH
T ss_pred CCCCCccCCCEec--ceEEE--ECCccccccCCccCC-CCCCCCCCEeEeECCEEECHHHHH
Confidence 3578999999663 46665 346999999987211 122232222334556677777764
No 215
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=28.95 E-value=28 Score=39.15 Aligned_cols=43 Identities=23% Similarity=0.552 Sum_probs=32.4
Q ss_pred cccccccccccCC-----------CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1224 WDEGICKVCGVDK-----------DDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1224 w~~~~CkVCg~~~-----------d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
|+.+.|.|||..- ++...|.|..|...||+. -+.||.|-...+
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~------------R~~C~~Cg~~~~ 233 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV------------RIKCSHCEESKH 233 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC------------TTSCSSSCCCSC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec------------CcCCcCCCCCCC
Confidence 8899999998741 233579999999999853 256999976543
No 216
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.28 E-value=27 Score=29.06 Aligned_cols=45 Identities=20% Similarity=0.453 Sum_probs=0.0
Q ss_pred CCCCCCcccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcc--------cccc
Q 047726 20 SGSTSSSETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWV--------CADC 87 (1297)
Q Consensus 20 s~sss~~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~--------Cp~C 87 (1297)
.......+++..|.+|...-... +.- .|...||..|+. .|+ ||.|
T Consensus 11 ~~~~~~~~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~-------------------~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 11 GQFVNKLQEEVICPICLDILQKP---VTI-DCGHNFCLKCIT-------------------QIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCCBCTTTCSBCSSC---EEC-TTSSEECHHHHH-------------------HHHHHCSSCCCCSCC
T ss_pred HHHHHhCccCCCCCcCCchhCCe---EEe-CCCCcchHHHHH-------------------HHHHcCCCCCcCcCC
No 217
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=27.71 E-value=26 Score=30.40 Aligned_cols=17 Identities=41% Similarity=1.136 Sum_probs=13.0
Q ss_pred CCCCCCCCccCccCCccc
Q 047726 1260 LVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1260 L~~IPeGdWyCP~C~~~~ 1277 (1297)
...+|+ +|.||.|-.++
T Consensus 30 fe~lP~-dw~CP~Cg~~K 46 (54)
T 4rxn_A 30 FKDIPD-DWVCPLCGVGK 46 (54)
T ss_dssp GGGSCT-TCBCTTTCCBG
T ss_pred hhHCCC-CCcCcCCCCcH
Confidence 346765 89999998764
No 218
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=27.49 E-value=22 Score=33.04 Aligned_cols=31 Identities=29% Similarity=0.701 Sum_probs=23.9
Q ss_pred ccccccccccccCCCCEEecCC--CCCcccccccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDA--CERGFHLECAG 61 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~--C~R~FHl~Cl~ 61 (1297)
...|.+|+.. ..|-.|-|.. |.++||..|..
T Consensus 17 ~l~C~iC~~~--~~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 17 KLTCYLCKQK--GVGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCBTTTTBC--CSSCEEECSCTTTCCEEEHHHHH
T ss_pred cCCCcCCCCC--CCcEeEecCCCCCCCcCcHHHHH
Confidence 3569999862 1366777775 99999999986
No 219
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.40 E-value=19 Score=30.34 Aligned_cols=48 Identities=17% Similarity=0.364 Sum_probs=32.3
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
+...|.+|...-....+ -.|...||..|+..-+. .+...||.|+..-.
T Consensus 14 ~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQ---TECGHRFCESCMAALLS---SSSPKCTACQESIV 61 (66)
T ss_dssp CCEECTTTCCEESSCCC---CSSSCCCCHHHHHHHHT---TSSCCCTTTCCCCC
T ss_pred cCCCCCCCChHhcCeeE---CCCCCHHHHHHHHHHHH---hCcCCCCCCCcCCC
Confidence 34579999754332222 27888999999886554 33457999987643
No 220
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=26.70 E-value=25 Score=31.69 Aligned_cols=56 Identities=21% Similarity=0.402 Sum_probs=0.0
Q ss_pred CCCCCCcccccccccccccccCCC-CEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 20 SGSTSSSETTSLCGACGVAAEAEG-DVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 20 s~sss~~e~d~~C~vCg~~e~~~G-dLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+.+....+++..|.+|-.+-.... -++-| .|...|+..|+. --... +...||.|..
T Consensus 2 s~~~~~~~~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~------~~~~~-------~~~~CP~CR~ 58 (78)
T 1e4u_A 2 SRSPDAKEDPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWH------RIRTD-------ENGLCPACRK 58 (78)
T ss_dssp CSCSCCCCCCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHH------HHTTS-------SCSBCTTTCC
T ss_pred CccccccccCCcCCccCccCcccccccccc-CCCCCcCHHHHH------HHHhc-------CCCCCCCCCC
No 221
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=26.68 E-value=27 Score=32.66 Aligned_cols=48 Identities=19% Similarity=0.379 Sum_probs=32.9
Q ss_pred CcccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 25 SSETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 25 ~~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
..+++..|.+|...-... ++. .|...||..|+.-+ + ..+...||.|..
T Consensus 11 ~~~~~~~C~iC~~~~~~p--~~~--~CgH~fC~~Ci~~~------~-------~~~~~~CP~Cr~ 58 (115)
T 3l11_A 11 PSLSECQCGICMEILVEP--VTL--PCNHTLCKPCFQST------V-------EKASLCCPFCRR 58 (115)
T ss_dssp CCHHHHBCTTTCSBCSSC--EEC--TTSCEECHHHHCCC------C-------CTTTSBCTTTCC
T ss_pred CCCCCCCCccCCcccCce--eEc--CCCCHHhHHHHHHH------H-------hHCcCCCCCCCc
Confidence 445678999999743322 222 79999999999822 2 123467999986
No 222
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.48 E-value=25 Score=29.94 Aligned_cols=50 Identities=22% Similarity=0.465 Sum_probs=33.3
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
+...|.+|...-. +.+++ .|...||..|+..-+.. ..+.-.||.|+....
T Consensus 19 ~~~~C~IC~~~~~-~~~~~--~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 19 EEVICPICLDILQ-KPVTI--DCGHNFCLKCITQIGET-SCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCBCTTTCSBCS-SEEEC--TTCCEEEHHHHHHHCSS-SCSCCCCSSSCCCCC
T ss_pred cCCEeccCCcccC-CeEEc--CCCChhhHHHHHHHHHc-CCCCCCCCCCCCcCC
Confidence 3457999985433 23333 89999999998865542 123557999987644
No 223
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=26.37 E-value=7.9 Score=36.28 Aligned_cols=49 Identities=22% Similarity=0.473 Sum_probs=34.2
Q ss_pred ccccccccccccccC---CCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 27 ETTSLCGACGVAAEA---EGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~---~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
++...|.+|...-.. .+.....-.|...||..|+..++ .. ...||.|..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~------~~--------~~~CP~Cr~ 121 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL------KN--------ANTCPTCRK 121 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHH------HH--------CSBCTTTCC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHH------Hc--------CCCCCCCCC
Confidence 456789999874322 23555677899999999998433 22 236999986
No 224
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=26.36 E-value=40 Score=28.88 Aligned_cols=17 Identities=29% Similarity=1.046 Sum_probs=13.0
Q ss_pred CCCCCCCCccCccCCccc
Q 047726 1260 LVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1260 L~~IPeGdWyCP~C~~~~ 1277 (1297)
...+|+ +|.||.|-..+
T Consensus 29 f~~lP~-dw~CP~Cg~~K 45 (52)
T 1yk4_A 29 FEDLPD-DWVCPLCGAPK 45 (52)
T ss_dssp GGGSCT-TCBCTTTCCBG
T ss_pred HhHCCC-CCcCCCCCCCH
Confidence 346775 89999998764
No 225
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.00 E-value=84 Score=28.16 Aligned_cols=58 Identities=26% Similarity=0.405 Sum_probs=33.1
Q ss_pred ccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 27 ETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.....|..|+++-.. +.+. .-++.||..|..-.. +.-++........++.-||..|..
T Consensus 23 ~~~~~C~~C~~~I~~--~~~~--a~~~~~H~~CF~C~~-C~~~L~~~~~~~~~g~~yC~~~y~ 80 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG--AVVK--ARDKYRHPECFVCAD-CNLNLKQKGYFFVEGELYCETHAR 80 (89)
T ss_dssp CSCCBCTTTCCBCCS--CCEE--SSSCEECTTTCCCSS-SCCCTTTSCCEEETTEEECHHHHH
T ss_pred CcCCCcccCCCEecc--cEEE--ECCceECccCCEecC-CCCCCCCCCeEeECCEEECHHHHH
Confidence 345789999996653 4443 356899999987111 112222212223356667777754
No 226
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=25.78 E-value=74 Score=30.74 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=22.1
Q ss_pred ccccccccccccCCCCEEecCCCCCcccccccc
Q 047726 29 TSLCGACGVAAEAEGDVVVCDACERGFHLECAG 61 (1297)
Q Consensus 29 d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~ 61 (1297)
...|..|+++-. ++.++. .-++.||..|..
T Consensus 61 ~~~C~~C~~~I~-~~~~v~--a~~~~wH~~CF~ 90 (123)
T 2l4z_A 61 WKRCAGCGGKIA-DRFLLY--AMDSYWHSRCLK 90 (123)
T ss_dssp CSBBSSSSSBCC-SSSEEE--ETTEEEETTTSB
T ss_pred CCcCcCCCCCcC-CcEEEE--eCCcEEcccccC
Confidence 578999999665 334343 357899999987
No 227
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=25.22 E-value=13 Score=37.11 Aligned_cols=46 Identities=17% Similarity=0.408 Sum_probs=33.2
Q ss_pred cccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 28 TTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
++..|.+|...-. +-+.+-.|...||..|+.-++ . .+...||.|..
T Consensus 53 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~------~-------~~~~~CP~Cr~ 98 (165)
T 2ckl_B 53 SELMCPICLDMLK---NTMTTKECLHRFCADCIITAL------R-------SGNKECPTCRK 98 (165)
T ss_dssp HHHBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHH------H-------TTCCBCTTTCC
T ss_pred CCCCCcccChHhh---CcCEeCCCCChhHHHHHHHHH------H-------hCcCCCCCCCC
Confidence 3568999988333 456677899999999998433 1 12456999986
No 228
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.20 E-value=27 Score=29.68 Aligned_cols=49 Identities=18% Similarity=0.437 Sum_probs=0.0
Q ss_pred CCCCCCcccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccc
Q 047726 20 SGSTSSSETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADC 87 (1297)
Q Consensus 20 s~sss~~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C 87 (1297)
........++..|.+|...-.. .--.|...||..|+..++ -.... ||.|
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~---~~~~~-----------CP~C 54 (70)
T 2ecn_A 6 SGRVKQLTDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWS---DRHRN-----------CPIC 54 (70)
T ss_dssp SCCCCCCCCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSS---CCCSS-----------CHHH
T ss_pred hhhhhcCCCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHH---HCcCc-----------CCCc
No 229
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.69 E-value=54 Score=28.07 Aligned_cols=58 Identities=21% Similarity=0.403 Sum_probs=36.2
Q ss_pred ccccccccccccC--CCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 29 TSLCGACGVAAEA--EGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 29 d~~C~vCg~~e~~--~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
...|..|+++-.. ...++. .-++.||..|..-.. +.-++........++.-||..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~CF~C~~-C~~~L~~~~f~~~~g~~yC~~c~~ 64 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS--FEERQWHNDCFNCKK-CSLSLVGRGFLTERDDILCPDCGK 64 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE--CSSCEECTTTCBCSS-SCCBCTTSCCEECSSSEECHHHHH
T ss_pred CCCCcCCCccccCCCCcceEE--ECCcccCcccCEecc-CCCcCCCCccEeECCEEEChhHcC
Confidence 3679999997765 335553 357899999887211 122333333334567778888875
No 230
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.55 E-value=25 Score=30.82 Aligned_cols=44 Identities=25% Similarity=0.346 Sum_probs=30.2
Q ss_pred cccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 28 TTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
++..|.+|...-. +-+. -.|...||..|+.-++ .. .-.||.|..
T Consensus 14 ~~~~C~IC~~~~~---~p~~-~~CgH~fC~~Ci~~~~------~~--------~~~CP~Cr~ 57 (81)
T 2csy_A 14 IPFRCFICRQAFQ---NPVV-TKCRHYFCESCALEHF------RA--------TPRCYICDQ 57 (81)
T ss_dssp CCSBCSSSCSBCC---SEEE-CTTSCEEEHHHHHHHH------HH--------CSBCSSSCC
T ss_pred CCCCCcCCCchhc---CeeE-ccCCCHhHHHHHHHHH------HC--------CCcCCCcCc
Confidence 4678999988443 2233 4799999999998322 11 235999986
No 231
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=24.14 E-value=45 Score=28.87 Aligned_cols=18 Identities=39% Similarity=0.984 Sum_probs=13.3
Q ss_pred CCCCCCCCccCccCCcccc
Q 047726 1260 LVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1260 L~~IPeGdWyCP~C~~~~~ 1278 (1297)
...+|+ +|.||.|...+.
T Consensus 30 f~~lP~-dw~CP~Cga~K~ 47 (55)
T 2v3b_B 30 WEDIPA-DWVCPDCGVGKI 47 (55)
T ss_dssp GGGSCT-TCCCTTTCCCGG
T ss_pred hhHCCC-CCcCCCCCCCHH
Confidence 345765 899999987643
No 232
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.97 E-value=26 Score=30.09 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=31.9
Q ss_pred cccccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1224 WDEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1224 w~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
.+...|.+|...-. +.+.+ .|...||..|+..-+.. ...||.|+..-.
T Consensus 13 ~~~~~C~IC~~~~~-~~~~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCV-HPVSL--PCKHVFCYLCVKGASWL----GKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCS-SEEEE--TTTEEEEHHHHHHCTTC----SSBCSSSCCBCC
T ss_pred CCCCCCccCCcccC-CCEEc--cCCCHHHHHHHHHHHHC----CCcCcCcCchhC
Confidence 34567999975432 22332 59888999998765543 257999987644
No 233
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=23.43 E-value=23 Score=27.89 Aligned_cols=17 Identities=29% Similarity=0.866 Sum_probs=13.5
Q ss_pred CCCCCccccccccCCcc
Q 047726 77 HNLLEWVCADCVKNGAK 93 (1297)
Q Consensus 77 ~p~~~W~Cp~C~~~g~k 93 (1297)
+.+|+|-|..|+-.|++
T Consensus 14 pregdwcchkcvpegkr 30 (36)
T 4b2u_A 14 PREGDWCCHKCVPEGKR 30 (36)
T ss_dssp GGGCCSSSSEEEEETTE
T ss_pred CCccCeeeecccccCce
Confidence 45689999999976653
No 234
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=23.41 E-value=18 Score=33.36 Aligned_cols=46 Identities=17% Similarity=0.428 Sum_probs=34.1
Q ss_pred cccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 28 TTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
++..|.+|...-. +-+.|-.|...||..|+..++ .. . .-.||.|..
T Consensus 21 ~~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~------~~----~---~~~CP~Cr~ 66 (100)
T 3lrq_A 21 EVFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWL------TE----Q---RAQCPHCRA 66 (100)
T ss_dssp HHTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHH------HH----T---CSBCTTTCC
T ss_pred CCCCCccCCcccc---CccccCCCCChhhHHHHHHHH------HH----C---cCCCCCCCC
Confidence 3788999998433 568889999999999998433 11 0 145999986
No 235
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.91 E-value=28 Score=30.11 Aligned_cols=52 Identities=21% Similarity=0.485 Sum_probs=32.9
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCcccccCCCCCC--CCCCCccCccCCccccc
Q 047726 1225 DEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVR--IPEGNWYCPSCVVRNSM 1279 (1297)
Q Consensus 1225 ~~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~--IPeGdWyCP~C~~~~~~ 1279 (1297)
+...|.+|...-..-.++ .|...||..|+..-+.. ...+.-.||.|+.....
T Consensus 18 ~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSL---DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSCBCC---SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCceeC---CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 345799998554332222 68888999998754332 12235689999876553
No 236
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=22.68 E-value=36 Score=31.77 Aligned_cols=47 Identities=26% Similarity=0.524 Sum_probs=32.8
Q ss_pred cccccccccCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCcccc
Q 047726 1226 EGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1226 ~~~CkVCg~~~d~~~LLLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~~ 1278 (1297)
+..|.+|...-. +.+.+ .|...|+..|+..-+. .+...||.|+....
T Consensus 15 ~~~C~iC~~~~~-~p~~~--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILV-EPVTL--PCNHTLCKPCFQSTVE---KASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCS-SCEEC--TTSCEECHHHHCCCCC---TTTSBCTTTCCBCH
T ss_pred CCCCccCCcccC-ceeEc--CCCCHHhHHHHHHHHh---HCcCCCCCCCcccC
Confidence 357999985433 23333 7999999999986654 34578999987643
No 237
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=22.60 E-value=41 Score=31.82 Aligned_cols=19 Identities=32% Similarity=1.013 Sum_probs=14.1
Q ss_pred CCCCCCCCCccCccCCcccc
Q 047726 1259 PLVRIPEGNWYCPSCVVRNS 1278 (1297)
Q Consensus 1259 PL~~IPeGdWyCP~C~~~~~ 1278 (1297)
+...+|+ +|.||.|-..+.
T Consensus 61 ~fedlPd-dW~CPvCga~K~ 79 (87)
T 1s24_A 61 RFEDIPD-DWCCPDCGATKE 79 (87)
T ss_dssp CGGGCCT-TCCCSSSCCCGG
T ss_pred ChhHCCC-CCCCCCCCCCHH
Confidence 3456776 899999987643
No 238
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=22.22 E-value=21 Score=27.71 Aligned_cols=11 Identities=27% Similarity=1.180 Sum_probs=9.5
Q ss_pred CCCcccccccc
Q 047726 79 LLEWVCADCVK 89 (1297)
Q Consensus 79 ~~~W~Cp~C~~ 89 (1297)
.|||+|+.|..
T Consensus 3 ~gDW~C~~C~~ 13 (32)
T 2lk0_A 3 FEDWLCNKCCL 13 (32)
T ss_dssp CSEEECTTTCC
T ss_pred CCCCCcCcCcC
Confidence 48999999975
No 239
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=22.17 E-value=30 Score=32.09 Aligned_cols=46 Identities=20% Similarity=0.357 Sum_probs=32.8
Q ss_pred ccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 27 ETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 27 e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
+++..|.+|...-. +-+....|...||..|+.-++ .. .-.||.|..
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~------~~--------~~~CP~Cr~ 58 (108)
T 2ckl_A 13 NPHLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYL------ET--------SKYCPICDV 58 (108)
T ss_dssp GGGTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHH------TS--------CSBCTTTCC
T ss_pred CCcCCCccCChHHh---CcCEeCCCCChhhHHHHHHHH------Hh--------CCcCcCCCc
Confidence 45788999988332 446667899999999998322 11 135999986
No 240
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=21.97 E-value=20 Score=34.16 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=23.8
Q ss_pred EEecCCCCCCcccccCCCCCCCCCCCccCccCCccc
Q 047726 1242 LLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRN 1277 (1297)
Q Consensus 1242 LLCD~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~~ 1277 (1297)
+.--.|...||..|+.+=|.. .-.||.|+..-
T Consensus 68 ~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~~ 99 (106)
T 3dpl_R 68 VAWGVCNHAFHFHCISRWLKT----RQVCPLDNREW 99 (106)
T ss_dssp EEEETTSCEEEHHHHHHHHTT----CSBCSSSCSBC
T ss_pred EeecccCcEECHHHHHHHHHc----CCcCcCCCCcc
Confidence 334579999999999876554 23699998763
No 241
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=21.32 E-value=23 Score=34.45 Aligned_cols=44 Identities=23% Similarity=0.431 Sum_probs=29.4
Q ss_pred cccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 28 TTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 28 ~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
++..|.+|...-. +-+.. .|...||..|+.-++ .. .-.||.|..
T Consensus 52 ~~~~C~iC~~~~~---~~~~~-~CgH~fc~~Ci~~~~------~~--------~~~CP~Cr~ 95 (138)
T 4ayc_A 52 NELQCIICSEYFI---EAVTL-NCAHSFCSYCINEWM------KR--------KIECPICRK 95 (138)
T ss_dssp HHSBCTTTCSBCS---SEEEE-TTSCEEEHHHHHHHT------TT--------CSBCTTTCC
T ss_pred ccCCCcccCcccC---CceEC-CCCCCccHHHHHHHH------Hc--------CCcCCCCCC
Confidence 3567999998443 22333 599999999998332 11 124999975
No 242
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=21.21 E-value=21 Score=34.84 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=0.0
Q ss_pred cCCCCCCcccccCCCCCCCCCCCccCccCCcc
Q 047726 1245 DTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVR 1276 (1297)
Q Consensus 1245 D~CD~aYHl~CL~PPL~~IPeGdWyCP~C~~~ 1276 (1297)
-.|...||..|+.+=|..- -.||.|+..
T Consensus 82 ~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~ 109 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKTR----QVCPLDNRE 109 (117)
T ss_dssp --------------------------------
T ss_pred CCcCceEcHHHHHHHHHcC----CcCCCCCCe
Confidence 3699999999999766552 269999765
No 243
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=21.06 E-value=35 Score=30.43 Aligned_cols=54 Identities=30% Similarity=0.650 Sum_probs=41.6
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
..+...|.+|.+.--++|-=-.|--|.+-|=--|-+- + ++ . .....|.|..|.+
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~-v----~l-r----~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGR-V----SL-R----SNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEE-E----ES-S----TTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCE-e----ee-c----CCeEEEEehhhhh
Confidence 4557899999998888887788999999887777661 1 11 1 5667999999985
No 244
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=20.32 E-value=32 Score=30.75 Aligned_cols=49 Identities=22% Similarity=0.423 Sum_probs=32.3
Q ss_pred cccccccccccccccCCCCEEecCCCCCcccccccccccccCCcccCCCCCCCCCCcccccccc
Q 047726 26 SETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVK 89 (1297)
Q Consensus 26 ~e~d~~C~vCg~~e~~~GdLlcCD~C~R~FHl~Cl~v~~~~~Ppl~~~p~~~p~~~W~Cp~C~~ 89 (1297)
.+++..|.+|...-... +.-..|...|+..|+.-++ .. .+.-.||.|..
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~------~~------~~~~~CP~Cr~ 58 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTAL------LE------SDEHTCPTCHQ 58 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHH------HH------CTTCCCTTTCC
T ss_pred CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHH------Hh------cCCCcCcCCCC
Confidence 34578899999843322 4444599999999997322 11 12346999986
No 245
>1i3j_A I-TEVI, intron-associated endonuclease 1; protein-DNA complex, extended structure, Zn-finger, minor groove helix, helix-turn-helix; 2.20A {Enterobacteria phage T4} SCOP: d.285.1.1 PDB: 1t2t_A
Probab=20.10 E-value=30 Score=34.10 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=18.0
Q ss_pred CCCcccchhhhhhhhccccc
Q 047726 257 DGRTFDSMSEVACYLGLTSS 276 (1297)
Q Consensus 257 dg~~f~s~~e~a~~lgl~~~ 276 (1297)
||+.|.|..|+|++||+...
T Consensus 79 dG~~f~S~~eAar~lg~s~~ 98 (116)
T 1i3j_A 79 DGVIFDCAADAARHFKISSG 98 (116)
T ss_dssp TTEEESSHHHHHHHHTCCHH
T ss_pred CCEEEcCHHHHHHHHCCCch
Confidence 78899999999999998853
Done!