BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047728
(474 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 162/376 (43%), Gaps = 45/376 (11%)
Query: 102 LIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVW-KNQREFSGFKSNSGLVKAIVIS- 157
L+ +L ++ +A + G + + SD K +++W +N + +S V+ + S
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 231
Query: 158 -NEKIFSGHQDGKIRVWKVSSK---DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRR-HR 212
+ I S D +++W + + + H F+ + S+ V+ +R
Sbjct: 232 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR 291
Query: 213 NGLWIK----HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI 268
NG ++ H ++ ++ S D + SAS DKT K+W + + L+++ H +V +
Sbjct: 292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGV 350
Query: 269 VAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG 327
DG + + S D TVK+W R Q QTL +V +A SPD +
Sbjct: 351 AFSPDGQTIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSVRGVAFSPDGQTIASA 403
Query: 328 SSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHI 385
S D V W R L L GH ++ + + S S D ++ +W R
Sbjct: 404 SDDKTVKLWNRNGQLLQ--TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ--- 458
Query: 386 CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
L LTGHS V+ +A D ++++ S S DK+VK+W + Q L+ T
Sbjct: 459 LLQTLTGHSSSVRGVAFSPDGQTIA--------SASDDKTVKLWNRNGQ---LLQT---- 503
Query: 446 PLEGHGVAPNSLPYAP 461
L GH + + ++P
Sbjct: 504 -LTGHSSSVRGVAFSP 518
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 147/348 (42%), Gaps = 38/348 (10%)
Query: 120 GDLLYTGSDSKNIRVW-KNQREFSGFKSNSGLVKAIVI--SNEKIFSGHQDGKIRVWKVS 176
G + + SD K +++W +N + +S V + + I S D +++W +
Sbjct: 233 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN 292
Query: 177 SK---DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRR-HRNGLWIK----HFDAISSLSM 228
+ + H F + S+ V+ +RNG ++ H ++ ++
Sbjct: 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAF 352
Query: 229 SEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKV 287
S D + SAS DKT K+W + + L+++ H +V + DG + + S D TVK+
Sbjct: 353 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411
Query: 288 WRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV 347
W R Q QTL +V +A SPD + S D V W R L
Sbjct: 412 WNRNGQ-------LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQ--T 462
Query: 348 LRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405
L GH ++ + G + S S D ++ +W R L LTGHS V+ +A D
Sbjct: 463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ---LLQTLTGHSSSVRGVAFSPD 519
Query: 406 DESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVA 453
++++ S S DK+VK+W + Q L+ T H GVA
Sbjct: 520 GQTIA--------SASDDKTVKLWNRNGQ---LLQTLTGHSSSVWGVA 556
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 149/359 (41%), Gaps = 49/359 (13%)
Query: 120 GDLLYTGSDSKNIRVW-KNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW--- 173
G + + SD K +++W +N + +S V + S + I S D +++W
Sbjct: 28 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 87
Query: 174 ----KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK----HFDAISS 225
+ + +S + V P + S + + +RNG ++ H ++
Sbjct: 88 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWG 144
Query: 226 LSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGT 284
++ S D + SAS DKT K+W + + L+++ H +V + DG + + S D T
Sbjct: 145 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 203
Query: 285 VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH 344
VK+W R Q QTL +V +A SPD + S D V W R L
Sbjct: 204 VKLWNRNGQ-------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 256
Query: 345 GGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAV 402
L GH ++ + G + S S D ++ +W R L LTGHS V +A
Sbjct: 257 --TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ---LLQTLTGHSSSVWGVAF 311
Query: 403 EKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP 461
D ++++ S S DK+VK+W + Q L GH + + ++P
Sbjct: 312 SPDGQTIA--------SASDDKTVKLWNRNGQ--------HLQTLTGHSSSVWGVAFSP 354
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 109/246 (44%), Gaps = 32/246 (13%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF 277
H ++ ++ S D + SAS DKT K+W + + L+++ H +V + DG +
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ S D TVK+W R Q QTL +V +A SPD + S D V W
Sbjct: 74 SASDDKTVKLWNRNGQ-------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Query: 338 RELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSG 395
R L L GH ++ + G + S S D ++ +W R L LTGHS
Sbjct: 127 RNGQLLQ--TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---LLQTLTGHSS 181
Query: 396 PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPN 455
V +A D ++++ S S DK+VK+W + Q L+ T L GH +
Sbjct: 182 SVWGVAFSPDGQTIA--------SASDDKTVKLWNRNGQ---LLQT-----LTGHSSSVR 225
Query: 456 SLPYAP 461
+ ++P
Sbjct: 226 GVAFSP 231
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 137/324 (42%), Gaps = 35/324 (10%)
Query: 120 GDLLYTGSDSKNIRVW-KNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVS 176
G + + SD K +++W +N + +S V + S + I S D +++W +
Sbjct: 274 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333
Query: 177 SKDASI---HKRVGTLPTFKDFIKCSMKPSNYIEVRR-HRNGLWIK----HFDAISSLSM 228
+ H F + S+ V+ +RNG ++ H ++ ++
Sbjct: 334 GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF 393
Query: 229 SEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV-AGFDGLVFTGSADGTVKV 287
S D + SAS DKT K+W + + L+++ H +V + + D + + S D TVK+
Sbjct: 394 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKL 452
Query: 288 WRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV 347
W R Q QTL +V +A SPD + S D V W R L
Sbjct: 453 WNRNGQ-------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ--T 503
Query: 348 LRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405
L GH ++ + G + S S D ++ +W R L LTGHS V +A D
Sbjct: 504 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ---LLQTLTGHSSSVWGVAFSPD 560
Query: 406 DESLSREKRWILYSGSLDKSVKMW 429
++++ S S DK+VK+W
Sbjct: 561 GQTIA--------SASSDKTVKLW 576
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 32/295 (10%)
Query: 102 LIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVW-KNQREFSGFKSNSGLVKAIVIS- 157
L+ +L ++ +A + G + + SD K +++W +N + +S V + S
Sbjct: 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSP 354
Query: 158 -NEKIFSGHQDGKIRVW-------KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVR 209
+ I S D +++W + + +S + V P + S + +
Sbjct: 355 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-- 412
Query: 210 RHRNGLWIK----HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV 265
+RNG ++ H ++ ++ S D + SAS DKT K+W + + L+++ H +V
Sbjct: 413 -NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 470
Query: 266 NSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIV 324
+ DG + + S D TVK+W R Q QTL +V +A SPD +
Sbjct: 471 RGVAFSPDGQTIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSVRGVAFSPDGQTI 523
Query: 325 YCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIW 377
S D V W R L L GH ++ + G + S S+D ++ +W
Sbjct: 524 ASASDDKTVKLWNRNGQLLQ--TLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
H IS ++ S D NLL SAS DKT K+W S KCL+++ H + V F+ L
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 127
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ +GS D +V++W + GK K TL V+A+ + D +++ S DGL
Sbjct: 128 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
W+ + G L+ ++ + G + + + D ++ +W + + CL
Sbjct: 182 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 235
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
TGH C+ + S++ K WI+ SGS D V +W + Q +V Q H
Sbjct: 236 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 284
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 41/225 (18%)
Query: 121 DLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEK--IFSGHQDGKIRVWKVS 176
+LL + SD K +++W + + K +S V + + I SG D +R+W
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
D K + TLP H D +S++ + D +L+
Sbjct: 141 --DVKTGKCLKTLPA---------------------------HSDPVSAVHFNRDGSLIV 171
Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV--AGFDGLVFTGSADGTVKVWRRELQG 294
S+S+D ++W T+ +CL+++I D+ S V + + + D T+K+W +G
Sbjct: 172 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KG 230
Query: 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
K K + ++ C +++ IV GS D LV W +
Sbjct: 231 KCLKTYTGHK-NEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQ 273
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 291 ELQGKGT----KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG 346
E Q K T + TL AV+++ SP+ + S+D L+ W +
Sbjct: 7 EFQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEK 65
Query: 347 VLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEK 404
+ GHKL I + + NL+ S S D ++ IW + CL L GHS V C
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP 123
Query: 405 DDESLSREKRWILYSGSLDKSVKMWRV 431
++ SGS D+SV++W V
Sbjct: 124 QSN--------LIVSGSFDESVRIWDV 142
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVF 277
H A+SS+ S + L S+S DK K+W D K +++ H ++ + D L+
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ S D T+K+W GK K TL V +P + ++ GS D V W+
Sbjct: 88 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 338 RELNLSHGGVLR-----GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG 392
+ G L+ ++ + G+L+ S S D IW + CL L
Sbjct: 142 ----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLID 195
Query: 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
P S ++IL + +LD ++K+W S+
Sbjct: 196 DDNPPVSFV------KFSPNGKYIL-AATLDNTLKLWDYSK 229
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
H IS ++ S D NLL SAS DKT K+W S KCL+++ H + V F+ L
Sbjct: 88 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 145
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ +GS D +V++W + GK K TL V+A+ + D +++ S DGL
Sbjct: 146 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 199
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
W+ + G L+ ++ + G + + + D ++ +W + + CL
Sbjct: 200 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 253
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
TGH C+ + S++ K WI+ SGS D V +W + Q +V Q H
Sbjct: 254 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 302
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 112/271 (41%), Gaps = 52/271 (19%)
Query: 121 DLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEK--IFSGHQDGKIRVWKVS 176
+LL + SD K +++W + + K +S V + + I SG D +R+W
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--- 158
Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
D K + TLP H D +S++ + D +L+
Sbjct: 159 --DVKTGKCLKTLPA---------------------------HSDPVSAVHFNRDGSLIV 189
Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV--AGFDGLVFTGSADGTVKVWRRELQG 294
S+S+D ++W T+ +CL+++I D+ S V + + + D T+K+W +G
Sbjct: 190 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KG 248
Query: 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV---LRGH 351
K K + K C +++ IV GS D LV W NL + L+GH
Sbjct: 249 KCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIW----NLQTKEIVQKLQGH 302
Query: 352 KLAILCLVT--AGNLVFSGSA--DMSICIWR 378
++ N++ S + D +I +W+
Sbjct: 303 TDVVISTACHPTENIIASAALENDKTIKLWK 333
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
TL AV+++ SP+ + S+D L+ W + + GHKL I + +
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 100
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
NL+ S S D ++ IW + CL L GHS V C ++ SGS
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 150
Query: 422 LDKSVKMWRV 431
D+SV++W V
Sbjct: 151 FDESVRIWDV 160
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVF 277
H A+SS+ S + L S+S DK K+W D K +++ H ++ + D L+
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 105
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ S D T+K+W GK K TL V +P + ++ GS D V W+
Sbjct: 106 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Query: 338 RELNLSHGGVLR-----GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG 392
+ G L+ ++ + G+L+ S S D IW + CL L
Sbjct: 160 ----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLID 213
Query: 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
P S ++IL + +LD ++K+W S+
Sbjct: 214 DDNPPVSFV------KFSPNGKYIL-AATLDNTLKLWDYSK 247
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
H IS ++ S D NLL SAS DKT K+W S KCL+++ H + V F+ L
Sbjct: 81 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 138
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ +GS D +V++W + GK K TL V+A+ + D +++ S DGL
Sbjct: 139 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 192
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
W+ + G L+ ++ + G + + + D ++ +W + + CL
Sbjct: 193 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 246
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
TGH C+ + S++ K WI+ SGS D V +W + Q +V Q H
Sbjct: 247 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 295
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 112/271 (41%), Gaps = 52/271 (19%)
Query: 121 DLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEK--IFSGHQDGKIRVWKVS 176
+LL + SD K +++W + + K +S V + + I SG D +R+W
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--- 151
Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
D K + TLP H D +S++ + D +L+
Sbjct: 152 --DVKTGKCLKTLPA---------------------------HSDPVSAVHFNRDGSLIV 182
Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV--AGFDGLVFTGSADGTVKVWRRELQG 294
S+S+D ++W T+ +CL+++I D+ S V + + + D T+K+W +G
Sbjct: 183 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KG 241
Query: 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV---LRGH 351
K K + K C +++ IV GS D LV W NL + L+GH
Sbjct: 242 KCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIW----NLQTKEIVQKLQGH 295
Query: 352 KLAILCLVT--AGNLVFSGSA--DMSICIWR 378
++ N++ S + D +I +W+
Sbjct: 296 TDVVISTACHPTENIIASAALENDKTIKLWK 326
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
TL AV+++ SP+ + S+D L+ W + + GHKL I + +
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 93
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
NL+ S S D ++ IW + CL L GHS V C ++ SGS
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 143
Query: 422 LDKSVKMWRV 431
D+SV++W V
Sbjct: 144 FDESVRIWDV 153
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVF 277
H A+SS+ S + L S+S DK K+W D K +++ H ++ + D L+
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 98
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ S D T+K+W GK K TL V +P + ++ GS D V W+
Sbjct: 99 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Query: 338 RELNLSHGGVLR-----GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG 392
+ G L+ ++ + G+L+ S S D IW + CL L
Sbjct: 153 ----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLID 206
Query: 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
P S ++IL + +LD ++K+W S+
Sbjct: 207 DDNPPVSFV------KFSPNGKYIL-AATLDNTLKLWDYSK 240
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
H IS ++ S D NLL SAS DKT K+W S KCL+++ H + V F+ L
Sbjct: 86 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 143
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ +GS D +V++W + GK K TL V+A+ + D +++ S DGL
Sbjct: 144 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 197
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
W+ + G L+ ++ + G + + + D ++ +W + + CL
Sbjct: 198 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 251
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
TGH C+ + S++ K WI+ SGS D V +W + Q +V Q H
Sbjct: 252 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 300
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 112/271 (41%), Gaps = 52/271 (19%)
Query: 121 DLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEK--IFSGHQDGKIRVWKVS 176
+LL + SD K +++W + + K +S V + + I SG D +R+W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--- 156
Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
D K + TLP H D +S++ + D +L+
Sbjct: 157 --DVKTGKCLKTLPA---------------------------HSDPVSAVHFNRDGSLIV 187
Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV--AGFDGLVFTGSADGTVKVWRRELQG 294
S+S+D ++W T+ +CL+++I D+ S V + + + D T+K+W +G
Sbjct: 188 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KG 246
Query: 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV---LRGH 351
K K + K C +++ IV GS D LV W NL + L+GH
Sbjct: 247 KCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIW----NLQTKEIVQKLQGH 300
Query: 352 KLAILCLVT--AGNLVFSGSA--DMSICIWR 378
++ N++ S + D +I +W+
Sbjct: 301 TDVVISTACHPTENIIASAALENDKTIKLWK 331
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
TL AV+++ SP+ + S+D L+ W + + GHKL I + +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 98
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
NL+ S S D ++ IW + CL L GHS V C ++ SGS
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 148
Query: 422 LDKSVKMWRV 431
D+SV++W V
Sbjct: 149 FDESVRIWDV 158
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVF 277
H A+SS+ S + L S+S DK K+W D K +++ H ++ + D L+
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ S D T+K+W GK K TL V +P + ++ GS D V W+
Sbjct: 104 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 338 RELNLSHGGVLR-----GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG 392
+ G L+ ++ + G+L+ S S D IW + CL L
Sbjct: 158 ----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLID 211
Query: 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
P S ++IL + +LD ++K+W S+
Sbjct: 212 DDNPPVSFV------KFSPNGKYIL-AATLDNTLKLWDYSK 245
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
H IS ++ S D NLL SAS DKT K+W S KCL+++ H + V F+ L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ +GS D +V++W + GK K TL V+A+ + D +++ S DGL
Sbjct: 125 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
W+ + G L+ ++ + G + + + D ++ +W + + CL
Sbjct: 179 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 232
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
TGH C+ + S++ K WI+ SGS D V +W + Q +V Q H
Sbjct: 233 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 281
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 93/225 (41%), Gaps = 41/225 (18%)
Query: 121 DLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEK--IFSGHQDGKIRVWKVS 176
+LL + SD K +++W + + K +S V + + I SG D +R+W
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
D K + TLP H D +S++ + D +L+
Sbjct: 138 --DVKTGKCLKTLPA---------------------------HSDPVSAVHFNRDGSLIV 168
Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV--AGFDGLVFTGSADGTVKVWRRELQG 294
S+S+D ++W T+ +CL+++I D+ S V + + + D T+K+W +G
Sbjct: 169 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KG 227
Query: 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
K K + K C +++ IV GS D LV W +
Sbjct: 228 KCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIWNLQ 270
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
TL AV+++ SP+ + S+D L+ W + + GHKL I + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
NL+ S S D ++ IW + CL L GHS V C ++ SGS
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 129
Query: 422 LDKSVKMWRV 431
D+SV++W V
Sbjct: 130 FDESVRIWDV 139
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVF 277
H A+SS+ S + L S+S DK K+W D K +++ H ++ + D L+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ S D T+K+W GK K TL V +P + ++ GS D V W+
Sbjct: 85 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 338 RELNLSHGGVLR-----GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG 392
+ G L+ ++ + G+L+ S S D IW + CL L
Sbjct: 139 ----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLID 192
Query: 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
P S ++IL + +LD ++K+W S+
Sbjct: 193 DDNPPVSFV------KFSPNGKYIL-AATLDNTLKLWDYSK 226
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
H IS ++ S D NLL SAS DKT K+W S KCL+++ H + V F+ L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ +GS D +V++W + GK K TL V+A+ + D +++ S DGL
Sbjct: 125 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
W+ + G L+ ++ + G + + + D ++ +W + + CL
Sbjct: 179 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 232
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
TGH C+ + S++ K WI+ SGS D V +W + Q +V Q H
Sbjct: 233 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 281
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 93/225 (41%), Gaps = 41/225 (18%)
Query: 121 DLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEK--IFSGHQDGKIRVWKVS 176
+LL + SD K +++W + + K +S V + + I SG D +R+W
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
D K + TLP H D +S++ + D +L+
Sbjct: 138 --DVKTGKCLKTLPA---------------------------HSDPVSAVHFNRDGSLIV 168
Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV--AGFDGLVFTGSADGTVKVWRRELQG 294
S+S+D ++W T+ +CL+++I D+ S V + + + D T+K+W +G
Sbjct: 169 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KG 227
Query: 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
K K + K C +++ IV GS D LV W +
Sbjct: 228 KCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIWNLQ 270
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
TL AV+++ SP+ + S+D L+ W + + GHKL I + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
NL+ S S D ++ IW + CL L GHS V C ++ SGS
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 129
Query: 422 LDKSVKMWRV 431
D+SV++W V
Sbjct: 130 FDESVRIWDV 139
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
H IS ++ S D NLL SAS DKT K+W S KCL+++ H + V F+ L
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 127
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ +GS D +V++W + GK K TL V+A+ + D +++ S DGL
Sbjct: 128 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
W+ + G L+ ++ + G + + + D ++ +W + + CL
Sbjct: 182 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 235
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
TGH C+ + S++ K WI+ SGS D V +W + Q +V Q H
Sbjct: 236 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 284
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 41/225 (18%)
Query: 121 DLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEK--IFSGHQDGKIRVWKVS 176
+LL + SD K +++W + + K +S V + + I SG D +R+W
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
D K + TLP H D +S++ + D +L+
Sbjct: 141 --DVKTGKCLKTLPA---------------------------HSDPVSAVHFNRDGSLIV 171
Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV--AGFDGLVFTGSADGTVKVWRRELQG 294
S+S+D ++W T+ +CL+++I D+ S V + + + D T+K+W +G
Sbjct: 172 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KG 230
Query: 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
K K + ++ C +++ IV GS D LV W +
Sbjct: 231 KCLKTYTGHK-NEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQ 273
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
TL AV+++ SP+ + S+D L+ W + + GHKL I + +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
NL+ S S D ++ IW + CL L GHS V C ++ SGS
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 132
Query: 422 LDKSVKMWRV 431
D+SV++W V
Sbjct: 133 FDESVRIWDV 142
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVF 277
H A+SS+ S + L S+S DK K+W D K +++ H ++ + D L+
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ S D T+K+W GK K TL V +P + ++ GS D V W+
Sbjct: 88 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 338 RELNLSHGGVLR-----GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG 392
+ G L+ ++ + G+L+ S S D IW + CL L
Sbjct: 142 ----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLID 195
Query: 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
P S ++IL + +LD ++K+W S+
Sbjct: 196 DDNPPVSFV------KFSPNGKYIL-AATLDNTLKLWDYSK 229
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
H IS ++ S D NLL SAS DKT K+W S KCL+++ H + V F+ L
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 127
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ +GS D +V++W + GK K TL V+A+ + D +++ S DGL
Sbjct: 128 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
W+ + G L+ ++ + G + + + D ++ +W + + CL
Sbjct: 182 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 235
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
TGH C+ + S++ K WI+ SGS D V +W + Q +V Q H
Sbjct: 236 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 284
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 41/225 (18%)
Query: 121 DLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEK--IFSGHQDGKIRVWKVS 176
+LL + SD K +++W + + K +S V + + I SG D +R+W
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
D K + TLP H D +S++ + D +L+
Sbjct: 141 --DVKTGKCLKTLPA---------------------------HSDPVSAVHFNRDGSLIV 171
Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV--AGFDGLVFTGSADGTVKVWRRELQG 294
S+S+D ++W T+ +CL+++I D+ S V + + + D T+K+W +G
Sbjct: 172 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KG 230
Query: 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
K K + ++ C +++ IV GS D LV W +
Sbjct: 231 KCLKTYTGHK-NEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQ 273
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
TL AV+++ SP+ + S+D L+ W + + GHKL I + +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
NL+ S S D ++ IW + CL L GHS V C ++ SGS
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 132
Query: 422 LDKSVKMWRV 431
D+SV++W V
Sbjct: 133 FDESVRIWDV 142
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVF 277
H A+SS+ S + L S+S DK K+W D K +++ H ++ + D L+
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ S D T+K+W GK K TL V +P + ++ GS D V W+
Sbjct: 88 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 338 RELNLSHGGVLR-----GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG 392
+ G L+ ++ + G+L+ S S D IW + CL L
Sbjct: 142 ----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLID 195
Query: 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
P S ++IL + +LD ++K+W S+
Sbjct: 196 DDNPPVSFV------KFSPNGKYIL-AATLDNTLKLWDYSK 229
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
H IS ++ S D NLL SAS DKT K+W S KCL+++ H + V F+ L
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 121
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ +GS D +V++W + GK K TL V+A+ + D +++ S DGL
Sbjct: 122 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
W+ + G L+ ++ + G + + + D ++ +W + + CL
Sbjct: 176 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 229
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
TGH C+ + S++ K WI+ SGS D V +W + Q +V Q H
Sbjct: 230 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 278
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 41/225 (18%)
Query: 121 DLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEK--IFSGHQDGKIRVWKVS 176
+LL + SD K +++W + + K +S V + + I SG D +R+W
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
D K + TLP H D +S++ + D +L+
Sbjct: 135 --DVKTGKCLKTLPA---------------------------HSDPVSAVHFNRDGSLIV 165
Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV--AGFDGLVFTGSADGTVKVWRRELQG 294
S+S+D ++W T+ +CL+++I D+ S V + + + D T+K+W +G
Sbjct: 166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KG 224
Query: 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
K K + ++ C +++ IV GS D LV W +
Sbjct: 225 KCLKTYTGHK-NEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQ 267
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
TL AV+++ SP+ + S+D L+ W + + GHKL I + +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
NL+ S S D ++ IW + CL L GHS V C ++ SGS
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 126
Query: 422 LDKSVKMWRV 431
D+SV++W V
Sbjct: 127 FDESVRIWDV 136
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVF 277
H A+SS+ S + L S+S DK K+W D K +++ H ++ + D L+
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ S D T+K+W GK K TL V +P + ++ GS D V W+
Sbjct: 82 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 338 RELNLSHGGVLR-----GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG 392
+ G L+ ++ + G+L+ S S D IW + CL L
Sbjct: 136 ----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLID 189
Query: 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
P S ++IL + +LD ++K+W S+
Sbjct: 190 DDNPPVSFV------KFSPNGKYIL-AATLDNTLKLWDYSK 223
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
H IS ++ S D NLL SAS DKT K+W S KCL+++ H + V F+ L
Sbjct: 65 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 122
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ +GS D +V++W + GK K TL V+A+ + D +++ S DGL
Sbjct: 123 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 176
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
W+ + G L+ ++ + G + + + D ++ +W + + CL
Sbjct: 177 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 230
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
TGH C+ + S++ K WI+ SGS D V +W + Q +V Q H
Sbjct: 231 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 279
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 41/225 (18%)
Query: 121 DLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEK--IFSGHQDGKIRVWKVS 176
+LL + SD K +++W + + K +S V + + I SG D +R+W
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--- 135
Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
D K + TLP H D +S++ + D +L+
Sbjct: 136 --DVKTGKCLKTLPA---------------------------HSDPVSAVHFNRDGSLIV 166
Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV--AGFDGLVFTGSADGTVKVWRRELQG 294
S+S+D ++W T+ +CL+++I D+ S V + + + D T+K+W +G
Sbjct: 167 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KG 225
Query: 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
K K + ++ C +++ IV GS D LV W +
Sbjct: 226 KCLKTYTGHK-NEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQ 268
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
TL AV+++ SP+ + S+D L+ W + + GHKL I + +
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 77
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
NL+ S S D ++ IW + CL L GHS V C ++ SGS
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 127
Query: 422 LDKSVKMWRV 431
D+SV++W V
Sbjct: 128 FDESVRIWDV 137
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVF 277
H A+SS+ S + L S+S DK K+W D K +++ H ++ + D L+
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 82
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ S D T+K+W GK K TL V +P + ++ GS D V W+
Sbjct: 83 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 338 RELNLSHGGVLR-----GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG 392
+ G L+ ++ + G+L+ S S D IW + CL L
Sbjct: 137 ----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLID 190
Query: 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
P S ++IL + +LD ++K+W S+
Sbjct: 191 DDNPPVSFV------KFSPNGKYIL-AATLDNTLKLWDYSK 224
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
H IS ++ S D NLL SAS DKT K+W S KCL+++ H + V F+ L
Sbjct: 69 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 126
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ +GS D +V++W + GK K TL V+A+ + D +++ S DGL
Sbjct: 127 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 180
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
W+ + G L+ ++ + G + + + D ++ +W + + CL
Sbjct: 181 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 234
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
TGH C+ + S++ K WI+ SGS D V +W + Q +V Q H
Sbjct: 235 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 283
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 41/225 (18%)
Query: 121 DLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEK--IFSGHQDGKIRVWKVS 176
+LL + SD K +++W + + K +S V + + I SG D +R+W
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--- 139
Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
D K + TLP H D +S++ + D +L+
Sbjct: 140 --DVKTGKCLKTLPA---------------------------HSDPVSAVHFNRDGSLIV 170
Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV--AGFDGLVFTGSADGTVKVWRRELQG 294
S+S+D ++W T+ +CL+++I D+ S V + + + D T+K+W +G
Sbjct: 171 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KG 229
Query: 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
K K + ++ C +++ IV GS D LV W +
Sbjct: 230 KCLKTYTGHK-NEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQ 272
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
TL AV+++ SP+ + S+D L+ W + + GHKL I + +
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 81
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
NL+ S S D ++ IW + CL L GHS V C ++ SGS
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 131
Query: 422 LDKSVKMWRV 431
D+SV++W V
Sbjct: 132 FDESVRIWDV 141
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVF 277
H A+SS+ S + L S+S DK K+W D K +++ H ++ + D L+
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 86
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ S D T+K+W GK K TL V +P + ++ GS D V W+
Sbjct: 87 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Query: 338 RELNLSHGGVLR-----GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG 392
+ G L+ ++ + G+L+ S S D IW + CL L
Sbjct: 141 ----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLID 194
Query: 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
P S ++IL + +LD ++K+W S+
Sbjct: 195 DDNPPVSFV------KFSPNGKYIL-AATLDNTLKLWDYSK 228
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
H IS ++ S D NLL SAS DKT K+W S KCL+++ H + V F+ L
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 121
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ +GS D +V++W + GK K TL V+A+ + D +++ S DGL
Sbjct: 122 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
W+ + G L+ ++ + G + + + D ++ +W + + CL
Sbjct: 176 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 229
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
TGH C+ + S++ K WI+ SGS D V +W + Q +V Q H
Sbjct: 230 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 278
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 41/225 (18%)
Query: 121 DLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEK--IFSGHQDGKIRVWKVS 176
+LL + SD K +++W + + K +S V + + I SG D +R+W
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
D K + TLP H D +S++ + D +L+
Sbjct: 135 --DVKTGKCLKTLPA---------------------------HSDPVSAVHFNRDGSLIV 165
Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV--AGFDGLVFTGSADGTVKVWRRELQG 294
S+S+D ++W T+ +CL+++I D+ S V + + + D T+K+W +G
Sbjct: 166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KG 224
Query: 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
K K + ++ C +++ IV GS D LV W +
Sbjct: 225 KCLKTYTGHK-NEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQ 267
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
TL AV+++ SP+ + S+D L+ W + + GHKL I + +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
NL+ S S D ++ IW + CL L GHS V C ++ SGS
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 126
Query: 422 LDKSVKMWRV 431
D+SV++W V
Sbjct: 127 FDESVRIWDV 136
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVF 277
H A+SS+ S + L S+S DK K+W D K +++ H ++ + D L+
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ S D T+K+W GK K TL V +P + ++ GS D V W+
Sbjct: 82 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 338 RELNLSHGGVLR-----GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG 392
+ G L+ ++ + G+L+ S S D IW + CL L
Sbjct: 136 ----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLID 189
Query: 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
P S ++IL + +LD ++K+W S+
Sbjct: 190 DDNPPVSFV------KFSPNGKYIL-AATLDNTLKLWDYSK 223
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
H IS ++ S D NLL SAS DKT K+W S KCL+++ H + V F+ L
Sbjct: 60 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 117
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ +GS D +V++W + GK K TL V+A+ + D +++ S DGL
Sbjct: 118 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 171
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
W+ + G L+ ++ + G + + + D ++ +W + + CL
Sbjct: 172 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 225
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
TGH C+ + S++ K WI+ SGS D V +W + Q +V Q H
Sbjct: 226 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 274
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 41/225 (18%)
Query: 121 DLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEK--IFSGHQDGKIRVWKVS 176
+LL + SD K +++W + + K +S V + + I SG D +R+W
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--- 130
Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
D K + TLP H D +S++ + D +L+
Sbjct: 131 --DVKTGKCLKTLPA---------------------------HSDPVSAVHFNRDGSLIV 161
Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV--AGFDGLVFTGSADGTVKVWRRELQG 294
S+S+D ++W T+ +CL+++I D+ S V + + + D T+K+W +G
Sbjct: 162 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KG 220
Query: 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
K K + ++ C +++ IV GS D LV W +
Sbjct: 221 KCLKTYTGHK-NEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQ 263
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
TL AV+++ SP+ + S+D L+ W + + GHKL I + +
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 72
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
NL+ S S D ++ IW + CL L GHS V C ++ SGS
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 122
Query: 422 LDKSVKMWRV 431
D+SV++W V
Sbjct: 123 FDESVRIWDV 132
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVF 277
H A+SS+ S + L S+S DK K+W D K +++ H ++ + D L+
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 77
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ S D T+K+W GK K TL V +P + ++ GS D V W+
Sbjct: 78 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 338 RELNLSHGGVLR-----GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG 392
+ G L+ ++ + G+L+ S S D IW + CL L
Sbjct: 132 ----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLID 185
Query: 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
P S ++IL + +LD ++K+W S+
Sbjct: 186 DDNPPVSFV------KFSPNGKYIL-AATLDNTLKLWDYSK 219
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
H IS ++ S D NLL SAS DKT K+W S KCL+++ H + V F+ L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ +GS D +V++W + GK K TL V+A+ + D +++ S DGL
Sbjct: 125 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
W+ + G L+ ++ + G + + + D ++ +W + + CL
Sbjct: 179 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 232
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
TGH C+ + S++ K WI+ SGS D V +W + Q +V Q H
Sbjct: 233 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 281
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 93/225 (41%), Gaps = 41/225 (18%)
Query: 121 DLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEK--IFSGHQDGKIRVWKVS 176
+LL + SD K +++W + + K +S V + + I SG D +R+W
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
D K + TLP H D +S++ + D +L+
Sbjct: 138 --DVKTGKCLKTLPA---------------------------HSDPVSAVHFNRDGSLIV 168
Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV--AGFDGLVFTGSADGTVKVWRRELQG 294
S+S+D ++W T+ +CL+++I D+ S V + + + D T+K+W +G
Sbjct: 169 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KG 227
Query: 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
K K + K C +++ IV GS D LV W +
Sbjct: 228 KCLKTYTGHKNEKY-CIFANFSVTGGKWIV-SGSEDNLVYIWNLQ 270
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
TL AV+++ SP+ + S+D L+ W + + GHKL I + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
NL+ S S D ++ IW + CL L GHS V C ++ SGS
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 129
Query: 422 LDKSVKMWRV 431
D+SV++W V
Sbjct: 130 FDESVRIWDV 139
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
H IS ++ S D NLL SAS DKT K+W S KCL+++ H + V F+ L
Sbjct: 63 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 120
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ +GS D +V++W + GK K TL V+A+ + D +++ S DGL
Sbjct: 121 IVSGSFDESVRIWDVK-TGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 174
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
W+ + G L+ ++ + G + + + D ++ +W + + CL
Sbjct: 175 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 228
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
TGH C+ + S++ K WI+ SGS D V +W + Q +V Q H
Sbjct: 229 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNLVYIWNL--QTKEIVQKLQGH 277
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 41/225 (18%)
Query: 121 DLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEK--IFSGHQDGKIRVWKVS 176
+LL + SD K +++W + + K +S V + + I SG D +R+W
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--- 133
Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
D K + TLP H D +S++ + D +L+
Sbjct: 134 --DVKTGKCLKTLPA---------------------------HSDPVSAVHFNRDGSLIV 164
Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV--AGFDGLVFTGSADGTVKVWRRELQG 294
S+S+D ++W T+ +CL+++I D+ S V + + + D T+K+W +G
Sbjct: 165 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KG 223
Query: 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
K K + ++ C +++ IV GS D LV W +
Sbjct: 224 KCLKTYTGHK-NEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQ 266
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
TL AV+++ SP+ + S+D L+ W + + GHKL I + +
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 75
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
NL+ S S D ++ IW + CL L GHS V C ++ SGS
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 125
Query: 422 LDKSVKMWRV 431
D+SV++W V
Sbjct: 126 FDESVRIWDV 135
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVF 277
H A+SS+ S + L S+S DK K+W D K +++ H ++ + D L+
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 80
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ S D T+K+W GK K TL V +P + ++ GS D V W+
Sbjct: 81 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 338 RELNLSHGGVLR-----GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG 392
+ G L+ ++ + G+L+ S S D IW + CL L
Sbjct: 135 ----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLID 188
Query: 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
P S ++IL + +LD ++K+W S+
Sbjct: 189 DDNPPVSFV------KFSPNGKYIL-AATLDNTLKLWDYSK 222
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 83/199 (41%), Gaps = 22/199 (11%)
Query: 233 NLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRREL 292
N + S S D T KVW KCL +++ H V S D ++ +GS D T+KVW E
Sbjct: 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS-SQMRDNIIISGSTDRTLKVWNAE- 187
Query: 293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK 352
G+ + T T + V GS D + W+ E VL GH
Sbjct: 188 TGECIHTLYGHT-------STVRCMHLHEKRVVSGSRDATLRVWDIETGQCL-HVLMGHV 239
Query: 353 LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSRE 412
A+ C+ G V SG+ D + +W CL L GH+ V L +
Sbjct: 240 AAVRCVQYDGRRVVSGAYDFMVKVW--DPETETCLHTLQGHTNRVYSLQFDGIH------ 291
Query: 413 KRWILYSGSLDKSVKMWRV 431
+ SGSLD S+++W V
Sbjct: 292 ----VVSGSLDTSIRVWDV 306
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 134/342 (39%), Gaps = 74/342 (21%)
Query: 98 SPNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVW-----KNQREFSGFKSNSGLVK 152
SP VL G ++ I L G+ + +GSD ++VW K R G ++G V
Sbjct: 110 SPKVLKG---HDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG---HTGGVW 163
Query: 153 AIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHR 212
+ + + I SG D ++VW + + IH G T ++C
Sbjct: 164 SSQMRDNIIISGSTDRTLKVWNAETGEC-IHTLYGHTST----VRC-------------- 204
Query: 213 NGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF 272
M + + S S D T +VW +CL ++ H AV + +
Sbjct: 205 ---------------MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV--QY 247
Query: 273 DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG 331
DG V +G+ D VKVW E + TL V +L D V GS D
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETET------CLHTLQGHTNRVYSLQF--DGIHVVSGSLDT 299
Query: 332 LVNFWEREL-NLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML 390
+ W+ E N H L GH+ + N++ SG+AD ++ IW K + CL L
Sbjct: 300 SIRVWDVETGNCIH--TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ--CLQTL 355
Query: 391 TG---HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
G H V CL K+ + + S D +VK+W
Sbjct: 356 QGPNKHQSAVTCLQFNKN----------FVITSSDDGTVKLW 387
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 22/199 (11%)
Query: 233 NLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRREL 292
N++ S S D+T KVW +C+ ++ H V + + V +GS D T++VW ++
Sbjct: 170 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL-HEKRVVSGSRDATLRVW--DI 226
Query: 293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK 352
+ H + C + D V G+ D +V W+ E L+GH
Sbjct: 227 ETGQCLHVLMGHVAAVRC------VQYDGRRVVSGAYDFMVKVWDPETETCL-HTLQGHT 279
Query: 353 LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSRE 412
+ L G V SGS D SI +W + C+ LTGH + ++ +
Sbjct: 280 NRVYSLQFDGIHVVSGSLDTSIRVWDVETGN--CIHTLTGHQSLTSGMELKDN------- 330
Query: 413 KRWILYSGSLDKSVKMWRV 431
IL SG+ D +VK+W +
Sbjct: 331 ---ILVSGNADSTVKIWDI 346
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 129/304 (42%), Gaps = 59/304 (19%)
Query: 105 SLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIF 162
+LV G ++S +++ +GS + ++VW + ++ V+ + + +++
Sbjct: 154 TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 213
Query: 163 SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDA 222
SG +D +RVW + + +H +G + ++C
Sbjct: 214 SGSRDATLRVWDIETGQC-LHVLMGHVAA----VRC------------------------ 244
Query: 223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGL-VFTGSA 281
+ D + S ++D KVW CL ++ H + V S+ FDG+ V +GS
Sbjct: 245 -----VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSL 297
Query: 282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN 341
D +++VW +++ H TL + + + + + I+ G++D V W+
Sbjct: 298 DTSIRVW--DVETGNCIH----TLTGHQSLTSGMELKDN--ILVSGNADSTVKIWD---- 345
Query: 342 LSHGGVLRG------HKLAILCLVTAGNLVFSGSADMSICIWRRKENEHI--CLSMLTGH 393
+ G L+ H+ A+ CL N V + S D ++ +W K E I +++ +G
Sbjct: 346 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 405
Query: 394 SGPV 397
SG V
Sbjct: 406 SGGV 409
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 91/214 (42%), Gaps = 30/214 (14%)
Query: 247 WRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLL 306
WR + K + + HDD V + + + +GS D T+KVW + GK + TL+
Sbjct: 103 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW-SAVTGKCLR-----TLV 156
Query: 307 KQECAVTALAISPDAAIVYCGSSDGLVNFWEREL-NLSHGGVLRGHKLAILCLVTAGNLV 365
V + + + I+ GS+D + W E H L GH + C+ V
Sbjct: 157 GHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIH--TLYGHTSTVRCMHLHEKRV 212
Query: 366 FSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKS 425
SGS D ++ +W + + CL +L GH V+C V+ D + SG+ D
Sbjct: 213 VSGSRDATLRVWDIETGQ--CLHVLMGHVAAVRC--VQYDGRR--------VVSGAYDFM 260
Query: 426 VKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPY 459
VK+W + T H L+GH SL +
Sbjct: 261 VKVWDPETE-------TCLHTLQGHTNRVYSLQF 287
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
H IS ++ S D NLL SAS DKT K+W S KCL+++ H + V F+ L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ +GS D +V++W + +TL V+A+ + D +++ S DGL
Sbjct: 125 IVSGSFDESVRIWDVKTG------MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
W+ + G L+ ++ + G + + + D ++ +W + + CL
Sbjct: 179 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKT 232
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
TGH C+ + S++ K WI+ SGS D V +W + Q +V Q H
Sbjct: 233 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNMVYIWNL--QTKEIVQKLQGH 281
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 91/218 (41%), Gaps = 19/218 (8%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVF 277
H A+SS+ S + L S+S DK K+W D K +++ H ++ + D L+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ S D T+K+W GK K TL V +P + ++ GS D V W+
Sbjct: 85 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 338 RELNLSHGGVLRGHK--LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSG 395
+ + L H ++ + G+L+ S S D IW + CL L
Sbjct: 139 VKTGMCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDN 195
Query: 396 PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
P S ++IL + +LD ++K+W S+
Sbjct: 196 PPVSFV------KFSPNGKYIL-AATLDNTLKLWDYSK 226
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
TL AV+++ SP+ + S+D L+ W + + GHKL I + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
NL+ S S D ++ IW + CL L GHS V C ++ SGS
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 129
Query: 422 LDKSVKMWRV 431
D+SV++W V
Sbjct: 130 FDESVRIWDV 139
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 41/225 (18%)
Query: 121 DLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEK--IFSGHQDGKIRVWKVS 176
+LL + SD K +++W + + K +S V + + I SG D +R+W
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
D + TLP H D +S++ + D +L+
Sbjct: 138 --DVKTGMCLKTLPA---------------------------HSDPVSAVHFNRDGSLIV 168
Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV--AGFDGLVFTGSADGTVKVWRRELQG 294
S+S+D ++W T+ +CL+++I D+ S V + + + D T+K+W +G
Sbjct: 169 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KG 227
Query: 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
K K + ++ C +++ IV GS D +V W +
Sbjct: 228 KCLKTYTGHK-NEKYCIFANFSVTGGKWIV-SGSEDNMVYIWNLQ 270
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 30/236 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD---GL 275
H IS ++ S D NLL SAS DKT K+W S KCL+++ H + V F+ L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ +GS D +V++W + +TL V+A+ + D +++ S DGL
Sbjct: 125 IVSGSFDESVRIWDVKTG------MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 336 WERELNLSHGGVLR------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389
W+ + G L+ ++ + G + + + D + +W + + CL
Sbjct: 179 WDT----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGK--CLKT 232
Query: 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
TGH C+ + S++ K WI+ SGS D V +W + Q +V Q H
Sbjct: 233 YTGHKNEKYCIFA---NFSVTGGK-WIV-SGSEDNMVYIWNL--QTKEIVQKLQGH 281
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 116/324 (35%), Gaps = 106/324 (32%)
Query: 121 DLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEK--IFSGHQDGKIRVWKVS 176
+LL + SD K +++W + + K +S V + + I SG D +R+W
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236
D + TLP H D +S++ + D +L+
Sbjct: 138 --DVKTGMCLKTLPA---------------------------HSDPVSAVHFNRDGSLIV 168
Query: 237 SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG 296
S+S+D ++W T+ +CL+++I D+ S V
Sbjct: 169 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV--------------------------- 201
Query: 297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR---GHKL 353
SP+ + + D + W+ S G L+ GHK
Sbjct: 202 -------------------KFSPNGKYILAATLDNDLKLWD----YSKGKCLKTYTGHKN 238
Query: 354 AILCL-----VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDES 408
C+ VT G + SGS D + IW + E + L GH+ V A +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV--QKLQGHTDVVISTACHPTEN- 295
Query: 409 LSREKRWILYSGSL--DKSVKMWR 430
I+ S +L DK++K+W+
Sbjct: 296 -------IIASAALENDKTIKLWK 312
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 19/218 (8%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVF 277
H A+SS+ S + L S+S DK K+W D K +++ H ++ + D L+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ S D T+K+W GK K TL V +P + ++ GS D V W+
Sbjct: 85 SASDDKTLKIWDVS-SGKCLK-----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 338 RELNLSHGGVLRGHK--LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSG 395
+ + L H ++ + G+L+ S S D IW + CL L
Sbjct: 139 VKTGMCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDN 195
Query: 396 PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
P S ++IL + +LD +K+W S+
Sbjct: 196 PPVSFV------KFSPNGKYIL-AATLDNDLKLWDYSK 226
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA 361
TL AV+++ SP+ + S+D L+ W + + GHKL I + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
NL+ S S D ++ IW + CL L GHS V C ++ SGS
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSN--------LIVSGS 129
Query: 422 LDKSVKMWRV 431
D+SV++W V
Sbjct: 130 FDESVRIWDV 139
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 114/287 (39%), Gaps = 53/287 (18%)
Query: 151 VKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRR 210
V + ++KI SG +D I++W N +E +R
Sbjct: 136 VYCLQYDDQKIVSGLRDNTIKIWD----------------------------KNTLECKR 167
Query: 211 HRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVA 270
G H ++ L + D+ ++ + S D T +VW + + L ++I H +AV +
Sbjct: 168 ILTG----HTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF 221
Query: 271 GFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD 330
+G++ T S D ++ VW T + L+ AV + D + S D
Sbjct: 222 N-NGMMVTCSKDRSIAVWD---MASPTDITLRRVLVGHRAAVNV--VDFDDKYIVSASGD 275
Query: 331 GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML 390
+ W L GHK I CL LV SGS+D +I +W + CL +L
Sbjct: 276 RTIKVWNTS-TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA--CLRVL 332
Query: 391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP 437
GH V+C+ + KR + SG+ D +K+W + P
Sbjct: 333 EGHEELVRCIRFDN--------KR--IVSGAYDGKIKVWDLVAALDP 369
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 115/297 (38%), Gaps = 56/297 (18%)
Query: 113 IYSLAAAGDLLYTGSDSKNIRVW-KNQREFSGFKS-NSGLVKAIVISNEKIFSGHQDGKI 170
+Y L + +G I++W KN E + ++G V + I +G D +
Sbjct: 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTV 195
Query: 171 RVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE 230
RVW V++ + + TL I H +A+ L +
Sbjct: 196 RVWDVNTGEM-----LNTL---------------------------IHHCEAV--LHLRF 221
Query: 231 DQNLLYSASWDKTFKVWRT---SDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKV 287
+ ++ + S D++ VW +D ++ H AVN +V D + + S D T+KV
Sbjct: 222 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN-VVDFDDKYIVSASGDRTIKV 280
Query: 288 WRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV 347
W + F +TL + + L +V GSSD + W+ E + V
Sbjct: 281 W------NTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECG-ACLRV 331
Query: 348 LRGHKLAILCLVTAGNLVFSGSADMSICIWR-------RKENEHICLSMLTGHSGPV 397
L GH+ + C+ + SG+ D I +W R +CL L HSG V
Sbjct: 332 LEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 388
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 17/166 (10%)
Query: 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC 357
+H + + E + + D + G D + W++ L +L GH ++LC
Sbjct: 120 RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKN-TLECKRILTGHTGSVLC 178
Query: 358 LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWIL 417
L ++ +GS+D ++ +W E L+ L H V L R ++
Sbjct: 179 LQYDERVIITGSSDSTVRVWDVNTGEM--LNTLIHHCEAVLHL----------RFNNGMM 226
Query: 418 YSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSF 463
+ S D+S+ +W + A P T + L GH A N + + +
Sbjct: 227 VTCSKDRSIAVW---DMASP-TDITLRRVLVGHRAAVNVVDFDDKY 268
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 43/251 (17%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFT 278
H ++ + ED ++ A DK +V+ + + K L + HD V ++ G++ +
Sbjct: 120 HMTSVITCLQFEDNYVITGAD-DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 178
Query: 279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC--GSSDGLVNFW 336
GS D TV+VW +++ H F V L I I Y GS D ++ W
Sbjct: 179 GSTDRTVRVW--DIKKGCCTHVFE----GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 337 ER----------------------ELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSI 374
+ E N GVLRGH ++ + GN+V SGS D ++
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 292
Query: 375 CIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434
+W + + CL +L+GH+ + + + KR I S S+D ++++W + +
Sbjct: 293 IVWDVAQMK--CLYILSGHTDRIYSTIYDHE------RKRCI--SASMDTTIRIWDL--E 340
Query: 435 APPLVSTTQQH 445
L+ T Q H
Sbjct: 341 NGELMYTLQGH 351
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 131/323 (40%), Gaps = 50/323 (15%)
Query: 110 EGHIYSLAAA-GDLLYTGSDSKNIRVWKNQR-----EFSGFKSNSGLVKAIVISNEK-IF 162
+G +++L A G +L +GS + +RVW ++ F G S + + N K I
Sbjct: 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV 221
Query: 163 SGHQDGKIRVWKVSSKDASI--HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF 220
+G +D + VWK+ K++S+ H P F P +R H
Sbjct: 222 TGSRDNTLHVWKL-PKESSVPDHGEEHDYPLV--FHTPEENPYFVGVLRGH--------- 269
Query: 221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVFTG 279
S ++S N++ S S+D T VW + KCL + H D + S + + +
Sbjct: 270 -MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA 328
Query: 280 SADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE-- 337
S D T+++W E G + L+ A+ L D +V ++DG + W+
Sbjct: 329 SMDTTIRIWDLE---NGELMY----TLQGHTALVGLLRLSDKFLV-SAAADGSIRGWDAN 380
Query: 338 ---RELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML---- 390
R+ + H + AI + N++ SGS + I+ + + + ++L
Sbjct: 381 DYSRKFSYHHTNL-----SAITTFYVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDAD 434
Query: 391 ----TGHSGPVKCLAVEKDDESL 409
G AVEKD +S
Sbjct: 435 QIWSVNFKGKTLVAAVEKDGQSF 457
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 42/239 (17%)
Query: 231 DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRR 290
+ N + + + DK +V+ + + K L + HD V ++ G++ +GS D TV+VW
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVW-- 188
Query: 291 ELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC--GSSDGLVNFWER---------- 338
+++ H F V L I I Y GS D ++ W+
Sbjct: 189 DIKKGCCTHVFE----GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 244
Query: 339 ------------ELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHIC 386
E N GVLRGH ++ + GN+V SGS D ++ +W + + C
Sbjct: 245 EEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXK--C 302
Query: 387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445
L +L+GH+ + + + KR I S S D ++++W + + L T Q H
Sbjct: 303 LYILSGHTDRIYSTIYDHE------RKRCI--SASXDTTIRIWDL--ENGELXYTLQGH 351
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 131/323 (40%), Gaps = 50/323 (15%)
Query: 110 EGHIYSLAAA-GDLLYTGSDSKNIRVWKNQR-----EFSGFKSNSGLVKAIVISNEK-IF 162
+G +++L A G +L +GS + +RVW ++ F G S + + N K I
Sbjct: 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV 221
Query: 163 SGHQDGKIRVWKVSSKDASI--HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF 220
+G +D + VWK+ K++S+ H P F P +R H
Sbjct: 222 TGSRDNTLHVWKL-PKESSVPDHGEEHDYPLV--FHTPEENPYFVGVLRGH--------- 269
Query: 221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVFTG 279
S ++S N++ S S+D T VW + KCL + H D + S + + +
Sbjct: 270 -XASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISA 328
Query: 280 SADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE-- 337
S D T+++W E G + L+ A+ L D +V ++DG + W+
Sbjct: 329 SXDTTIRIWDLE---NGELXY----TLQGHTALVGLLRLSDKFLV-SAAADGSIRGWDAN 380
Query: 338 ---RELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML---- 390
R+ + H + AI + N++ SGS + I+ + + + ++L
Sbjct: 381 DYSRKFSYHHTNL-----SAITTFYVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDAD 434
Query: 391 ----TGHSGPVKCLAVEKDDESL 409
G AVEKD +S
Sbjct: 435 QIWSVNFKGKTLVAAVEKDGQSF 457
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 19/104 (18%)
Query: 348 LRGHKLAIL-CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD 406
LRGH +++ CL N V +G+ D I ++ + L L+GH G V L
Sbjct: 117 LRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKF--LLQLSGHDGGVWALKYAHGG 174
Query: 407 ESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH 450
IL SGS D++V++W + + H EGH
Sbjct: 175 ---------ILVSGSTDRTVRVWDIKKGCCT-------HVFEGH 202
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 121/274 (44%), Gaps = 50/274 (18%)
Query: 101 VLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWK----------NQREFSGFKSN 147
VL G++ + ++A D++ + S K+I +WK QR +G +
Sbjct: 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG---H 429
Query: 148 SGLVKAIVISNEKIF--SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNY 205
S V+ +V+S++ F SG DG++R+W +++ S + VG KD + + N
Sbjct: 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAA-GVSTRRFVGHT---KDVLSVAFSLDNR 485
Query: 206 IEVRRHRN---GLWIK--------------HFDAISSLSMSED--QNLLYSASWDKTFKV 246
V R+ LW H D +S + S + Q + SASWDKT KV
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545
Query: 247 WRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTL 305
W S+ K ++ H V+++ DG L +G DG V +W +G K +
Sbjct: 546 WNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL---AEGKKLYS---- 598
Query: 306 LKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
L+ + AL SP+ + C +++ + W+ E
Sbjct: 599 LEANSVIHALCFSPNRYWL-CAATEHGIKIWDLE 631
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 13/178 (7%)
Query: 260 AHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAI 317
AH D V +I D ++ + S D ++ +W+ K + L V + +
Sbjct: 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY-GVAQRRLTGHSHFVEDVVL 438
Query: 318 SPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTA--GNLVFSGSADMSIC 375
S D GS DG + W+ +S + GH +L + + + S S D +I
Sbjct: 439 SSDGQFALSGSWDGELRLWDLAAGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 376 IWRR-KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432
+W E ++ GH V C+ + + + S S DK+VK+W +S
Sbjct: 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT------IVSASWDKTVKVWNLS 549
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 100/236 (42%), Gaps = 39/236 (16%)
Query: 115 SLAAAGDLLYTGSDSKNIRVWKNQ-----REFSGFKSNSGLVKAIVISNEKIFSGHQDGK 169
S+ GD + + S K I++W+ Q + F+G + +V+ I S D
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQT 257
Query: 170 IRVWKVSSKDASIHKRVGTLPTFKDFIKC-SMKPSNYIEVRRHRNGLWIKHFDAISSLSM 228
+RVW V++K+ L + ++C S P + + +IS +
Sbjct: 258 VRVWVVATKECK-----AELREHRHVVECISWAPES--------------SYSSISEATG 298
Query: 229 SEDQN------LLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSA 281
SE + L S S DKT K+W S CL +++ HD+ V ++ G + + +
Sbjct: 299 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 358
Query: 282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
D T++VW + + K +TL E VT+L A V GS D V WE
Sbjct: 359 DKTLRVW--DYKNKRC----MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 233 NLLYSASWDKTFKVW--RTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWR 289
+++ SAS D T KVW T D++ ++ H D+V I G L+ + SAD T+K+W
Sbjct: 121 SVMVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW- 177
Query: 290 RELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR 349
+ QG +T+ + V++++I P+ + S D + WE +
Sbjct: 178 -DFQGFEC----IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-VKTFT 231
Query: 350 GHKLAILCLV--TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCL--AVEKD 405
GH+ + + G L+ S S D ++ +W E C + L H V+C+ A E
Sbjct: 232 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE--CKAELREHRHVVECISWAPESS 289
Query: 406 DESLSR----------EKRWILYSGSLDKSVKMWRVS 432
S+S + L SGS DK++KMW VS
Sbjct: 290 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 101/262 (38%), Gaps = 43/262 (16%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF 277
H D++ +S LL S S D T K+W ++C+ ++ HD V+S+ +G +
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 208
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ S D T+K+W E+Q + +T V + + D ++ S+D V W
Sbjct: 209 SASRDKTIKMW--EVQTG----YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Query: 338 RELNLSHGGVLRGHKLAILCLVTA----------------------GNLVFSGSADMSIC 375
LR H+ + C+ A G + SGS D +I
Sbjct: 263 VATKECKAE-LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 376 IWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435
+W +CL L GH V+ + + + S + DK++++W +
Sbjct: 322 MWDVSTG--MCLMTLVGHDNWVRGVLFHSGGK--------FILSCADDKTLRVWDYKNKR 371
Query: 436 PPLVSTTQQH---PLEGHGVAP 454
+H L+ H AP
Sbjct: 372 CMKTLNAHEHFVTSLDFHKTAP 393
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 8/162 (4%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVF- 277
H + SLS++ D L S + D + K+W + C ++ H+ +N+I +G F
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
TGS D T +++ +L+ +S + C +T+++ S ++ G D N W+
Sbjct: 243 TGSDDATCRLF--DLRADQELMTYSHDNII--CGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 338 RELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIW 377
L GVL GH + CL G V +GS D + IW
Sbjct: 299 -ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 112/298 (37%), Gaps = 57/298 (19%)
Query: 161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFI-KCSMKPS-NYI------------ 206
+ S QDGK+ +W D+ +V +P ++ C+ PS NY+
Sbjct: 70 LLSASQDGKLIIW-----DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
Query: 207 ---------EVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES 257
V R G H +S +D N + ++S D T +W + +
Sbjct: 125 NLKTREGNVRVSRELAG----HTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTT 179
Query: 258 VIAHDDAVNSIVAGFDGLVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALA 316
H V S+ D +F +G+ D + K+W + QT E + A+
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR------EGMCRQTFTGHESDINAIC 233
Query: 317 ISPDAAIVYCGSSDGLVNFWERE-----LNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD 371
P+ GS D ++ + SH ++ G + + +G L+ +G D
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDD 291
Query: 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
+ +W + + +L GH V CL V D +++ +GS D +K+W
Sbjct: 292 FNCNVWDALKADRA--GVLAGHDNRVSCLGVTDDGMAVA--------TGSWDSFLKIW 339
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 20/191 (10%)
Query: 275 LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVN 334
L+ + S DG + +W K + + V A +P V CG D + +
Sbjct: 69 LLLSASQDGKLIIWDSYTTNK------VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 335 FWE---RELNLSHGGVLRGHKLAI-LCLVTAGNLVFSGSADMSICIWRRKENEHICLSML 390
+ RE N+ L GH + C N + + S D + +W + + +
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT--TTF 180
Query: 391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH 450
TGH+G V L++ D + SG+ D S K+W V E T + +
Sbjct: 181 TGHTGDVMSLSLAPDTR--------LFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Query: 451 GVAPNSLPYAP 461
PN +A
Sbjct: 233 CFFPNGNAFAT 243
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 8/162 (4%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVF- 277
H + SLS++ D L S + D + K+W + C ++ H+ +N+I +G F
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
TGS D T +++ +L+ +S + C +T+++ S ++ G D N W+
Sbjct: 243 TGSDDATCRLF--DLRADQELMTYSHDNII--CGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 338 RELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIW 377
L GVL GH + CL G V +GS D + IW
Sbjct: 299 -ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 112/298 (37%), Gaps = 57/298 (19%)
Query: 161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFI-KCSMKPS-NYI------------ 206
+ S QDGK+ +W D+ +V +P ++ C+ PS NY+
Sbjct: 70 LLSASQDGKLIIW-----DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
Query: 207 ---------EVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES 257
V R G H +S +D N + ++S D T +W + +
Sbjct: 125 NLKTREGNVRVSRELAG----HTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTT 179
Query: 258 VIAHDDAVNSIVAGFDGLVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALA 316
H V S+ D +F +G+ D + K+W + QT E + A+
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR------EGMCRQTFTGHESDINAIC 233
Query: 317 ISPDAAIVYCGSSDGLVNFWERE-----LNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD 371
P+ GS D ++ + SH ++ G + + +G L+ +G D
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDD 291
Query: 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
+ +W + + +L GH V CL V D +++ +GS D +K+W
Sbjct: 292 FNCNVWDALKADRA--GVLAGHDNRVSCLGVTDDGMAVA--------TGSWDSFLKIW 339
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 20/191 (10%)
Query: 275 LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVN 334
L+ + S DG + +W K + + V A +P V CG D + +
Sbjct: 69 LLLSASQDGKLIIWDSYTTNK------VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 335 FWE---RELNLSHGGVLRGHKLAI-LCLVTAGNLVFSGSADMSICIWRRKENEHICLSML 390
+ RE N+ L GH + C N + + S D + +W + + +
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT--TTF 180
Query: 391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH 450
TGH+G V L++ D + SG+ D S K+W V E T + +
Sbjct: 181 TGHTGDVMSLSLAPDTR--------LFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Query: 451 GVAPNSLPYAP 461
PN +A
Sbjct: 233 CFFPNGNAFAT 243
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 8/162 (4%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVF- 277
H + SLS++ D L S + D + K+W + C ++ H+ +N+I +G F
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
TGS D T +++ +L+ +S + C +T+++ S ++ G D N W+
Sbjct: 243 TGSDDATCRLF--DLRADQELMTYSHDNII--CGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 338 RELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIW 377
L GVL GH + CL G V +GS D + IW
Sbjct: 299 -ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 112/298 (37%), Gaps = 57/298 (19%)
Query: 161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFI-KCSMKPS-NYI------------ 206
+ S QDGK+ +W D+ +V +P ++ C+ PS NY+
Sbjct: 70 LVSASQDGKLIIW-----DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
Query: 207 ---------EVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES 257
V R G H +S +D N + ++S D T +W + +
Sbjct: 125 NLKTREGNVRVSRELAG----HTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTT 179
Query: 258 VIAHDDAVNSIVAGFDGLVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALA 316
H V S+ D +F +G+ D + K+W + QT E + A+
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR------EGMCRQTFTGHESDINAIC 233
Query: 317 ISPDAAIVYCGSSDGLVNFWERE-----LNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD 371
P+ GS D ++ + SH ++ G + + +G L+ +G D
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDD 291
Query: 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
+ +W + + +L GH V CL V D +++ +GS D +K+W
Sbjct: 292 FNCNVWDALKADRA--GVLAGHDNRVSCLGVTDDGMAVA--------TGSWDSFLKIW 339
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 20/191 (10%)
Query: 275 LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVN 334
L+ + S DG + +W K + + V A +P V CG D + +
Sbjct: 69 LLVSASQDGKLIIWDSYTTNK------VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 335 FWE---RELNLSHGGVLRGHKLAI-LCLVTAGNLVFSGSADMSICIWRRKENEHICLSML 390
+ RE N+ L GH + C N + + S D + +W + + +
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT--TTF 180
Query: 391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH 450
TGH+G V L++ D + SG+ D S K+W V E T + +
Sbjct: 181 TGHTGDVMSLSLAPDTR--------LFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Query: 451 GVAPNSLPYAP 461
PN +A
Sbjct: 233 CFFPNGNAFAT 243
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 8/162 (4%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVF- 277
H + SLS++ D L S + D + K+W + C ++ H+ +N+I +G F
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
TGS D T +++ +L+ +S + C +T+++ S ++ G D N W+
Sbjct: 243 TGSDDATCRLF--DLRADQELMTYSHDNII--CGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 338 RELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIW 377
L GVL GH + CL G V +GS D + IW
Sbjct: 299 -ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 112/298 (37%), Gaps = 57/298 (19%)
Query: 161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFI-KCSMKPS-NYI------------ 206
+ S QDGK+ +W D+ +V +P ++ C+ PS NY+
Sbjct: 70 LVSASQDGKLIIW-----DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
Query: 207 ---------EVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES 257
V R G H +S +D N + ++S D T +W + +
Sbjct: 125 NLKTREGNVRVSRELAG----HTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTT 179
Query: 258 VIAHDDAVNSIVAGFDGLVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALA 316
H V S+ D +F +G+ D + K+W + QT E + A+
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR------EGMCRQTFTGHESDINAIC 233
Query: 317 ISPDAAIVYCGSSDGLVNFWERE-----LNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD 371
P+ GS D ++ + SH ++ G + + +G L+ +G D
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDD 291
Query: 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
+ +W + + +L GH V CL V D +++ +GS D +K+W
Sbjct: 292 FNCNVWDALKADRA--GVLAGHDNRVSCLGVTDDGMAVA--------TGSWDSFLKIW 339
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 20/191 (10%)
Query: 275 LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVN 334
L+ + S DG + +W K + + V A +P V CG D + +
Sbjct: 69 LLVSASQDGKLIIWDSYTTNK------VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 335 FWE---RELNLSHGGVLRGHKLAI-LCLVTAGNLVFSGSADMSICIWRRKENEHICLSML 390
+ RE N+ L GH + C N + + S D + +W + + +
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT--TTF 180
Query: 391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH 450
TGH+G V L++ D + SG+ D S K+W V E T + +
Sbjct: 181 TGHTGDVMSLSLAPDTR--------LFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Query: 451 GVAPNSLPYAP 461
PN +A
Sbjct: 233 CFFPNGNAFAT 243
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 8/162 (4%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVF- 277
H + SLS++ D L S + D + K+W + C ++ H+ +N+I +G F
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
TGS D T +++ +L+ +S + C +T+++ S ++ G D N W+
Sbjct: 254 TGSDDATCRLF--DLRADQELMTYSHDNII--CGITSVSFSKSGRLLLAGYDDFNCNVWD 309
Query: 338 RELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIW 377
L GVL GH + CL G V +GS D + IW
Sbjct: 310 -ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 53/296 (17%)
Query: 161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFI-KCSMKPS-NYI------------ 206
+ S QDGK+ +W D+ +V +P ++ C+ PS NY+
Sbjct: 81 LVSASQDGKLIIW-----DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 135
Query: 207 -------EVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI 259
VR R H +S +D N + ++S D T +W + +
Sbjct: 136 NLKTREGNVRVSRE--LAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFT 192
Query: 260 AHDDAVNSIVAGFDGLVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAIS 318
H V S+ D +F +G+ D + K+W + QT E + A+
Sbjct: 193 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR------EGMCRQTFTGHESDINAICFF 246
Query: 319 PDAAIVYCGSSDGLVNFWERE-----LNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMS 373
P+ GS D ++ + SH ++ G + + +G L+ +G D +
Sbjct: 247 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDDFN 304
Query: 374 ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
+W + + +L GH V CL V D +++ +GS D +K+W
Sbjct: 305 CNVWDALKADRA--GVLAGHDNRVSCLGVTDDGMAVA--------TGSWDSFLKIW 350
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 20/191 (10%)
Query: 275 LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVN 334
L+ + S DG + +W K + + V A +P V CG D + +
Sbjct: 80 LLVSASQDGKLIIWDSYTTNK------VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 133
Query: 335 FWE---RELNLSHGGVLRGHKLAI-LCLVTAGNLVFSGSADMSICIWRRKENEHICLSML 390
+ RE N+ L GH + C N + + S D + +W + + +
Sbjct: 134 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT--TTF 191
Query: 391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH 450
TGH+G V L++ D + SG+ D S K+W V E T + +
Sbjct: 192 TGHTGDVMSLSLAPDTR--------LFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 243
Query: 451 GVAPNSLPYAP 461
PN +A
Sbjct: 244 CFFPNGNAFAT 254
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 115/268 (42%), Gaps = 42/268 (15%)
Query: 102 LIGSLVREEGHIYSLAAAG---DLLYTGSDSKNIRVWKNQREFSGF-------KSNSGLV 151
L G+L G + +A D++ + S K I +WK R+ + + + +S V
Sbjct: 7 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 152 KAIVISNEKIF--SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVR 209
+VIS++ F SG DG +R+W +++ + + VG KD + + N V
Sbjct: 67 SDVVISSDGQFALSGSWDGTLRLWDLTTG-TTTRRFVGHT---KDVLSVAFSSDNRQIVS 122
Query: 210 RHRNG---LW------------IKHFDAISSLSMSEDQN--LLYSASWDKTFKVWRTSDY 252
R+ LW H + +S + S + + ++ S WDK KVW ++
Sbjct: 123 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 182
Query: 253 KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA 311
K + I H +N++ DG L +G DG +W +G KH ++ L
Sbjct: 183 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN-EG---KHLYT---LDGGDI 235
Query: 312 VTALAISPDAAIVYCGSSDGLVNFWERE 339
+ AL SP+ + C ++ + W+ E
Sbjct: 236 INALCFSPNRYWL-CAATGPSIKIWDLE 262
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 88/222 (39%), Gaps = 35/222 (15%)
Query: 185 RVGTLPTFKDFI------------KCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ 232
++ T P F D I K + +NY +R G H +S + +S D
Sbjct: 20 QIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG----HSHFVSDVVISSDG 75
Query: 233 NLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRE 291
S SWD T ++W + + H V S+ D + +GS D T+K+W
Sbjct: 76 QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT- 134
Query: 292 LQGKGTKHFFSQTLLKQECAVTALAISPDAA---IVYCGSSDGLVNFWERELNLSHGGVL 348
G + Q E V+ + SP+++ IV CG D LV W NL++ +
Sbjct: 135 ---LGVCKYTVQDESHSE-WVSCVRFSPNSSNPIIVSCGW-DKLVKVW----NLANCKLK 185
Query: 349 RGH-----KLAILCLVTAGNLVFSGSADMSICIWRRKENEHI 385
H L + + G+L SG D +W E +H+
Sbjct: 186 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 227
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 17/125 (13%)
Query: 312 VTALAISPD-AAIVYCGSSDGLVNFWERELNLSHGGV----LRGHK--LAILCLVTAGNL 364
VT +A +P ++ S D + W+ + ++ G+ LRGH ++ + + + G
Sbjct: 18 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF 77
Query: 365 VFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK 424
SGS D ++ +W GH+ V +A D+ + SGS DK
Sbjct: 78 ALSGSWDGTLRLWDLTTGTTT--RRFVGHTKDVLSVAFSSDNRQI--------VSGSRDK 127
Query: 425 SVKMW 429
++K+W
Sbjct: 128 TIKLW 132
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 133/332 (40%), Gaps = 89/332 (26%)
Query: 120 GDLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAI--VISNEKIFSGHQDGKIRVWKV 175
G L TG++ + IR+W +N++ + + + ++ S +K+ SG D +R+W +
Sbjct: 135 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL 194
Query: 176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNL 234
R G +CS+ S IE D ++++++S D
Sbjct: 195 ---------RTG---------QCSLTLS--IE-------------DGVTTVAVSPGDGKY 221
Query: 235 LYSASWDKTFKVWRTSDYKCL-------ESVIAHDDAVNSIVAGFDGL-VFTGSADGTVK 286
+ + S D+ +VW + + ES H D+V S+V DG V +GS D +VK
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281
Query: 287 VWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG 346
+W LQ K S+T C VT +
Sbjct: 282 LW--NLQNANNKS-DSKTPNSGTCEVTYI------------------------------- 307
Query: 347 VLRGHKLAILCLVTAGN--LVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEK 404
GHK +L + T N + SGS D + W +K L ML GH V +AV
Sbjct: 308 ---GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP--LLMLQGHRNSVISVAV-A 361
Query: 405 DDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436
+ SL E + +GS D ++W+ + AP
Sbjct: 362 NGSSLGPEYN-VFATGSGDCKARIWKYKKIAP 392
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 46/226 (20%)
Query: 206 IEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV 265
I+V H++ + H + + S D L + +KT +V+R SD L + ++ D A
Sbjct: 53 IDVELHKS---LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSD-GSLVARLSDDSAA 107
Query: 266 NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVY 325
N K ++ + + + + ++ SPD +
Sbjct: 108 N----------------------------KDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139
Query: 326 CGSSDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRKENE 383
G+ D L+ W+ E N +L+GH+ I L +G+ + SGS D ++ IW + +
Sbjct: 140 TGAEDRLIRIWDIE-NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198
Query: 384 HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
C L+ G V +AV D + +GSLD++V++W
Sbjct: 199 --CSLTLSIEDG-VTTVAVSPGDGKY-------IAAGSLDRAVRVW 234
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 115/269 (42%), Gaps = 42/269 (15%)
Query: 101 VLIGSLVREEGHIYSLAAAG---DLLYTGSDSKNIRVWKNQREFSGF-------KSNSGL 150
L G+L G + +A D++ + S K I +WK R+ + + + +S
Sbjct: 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 88
Query: 151 VKAIVISNEKIF--SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV 208
V +VIS++ F SG DG +R+W +++ + + VG KD + + N V
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTG-TTTRRFVGHT---KDVLSVAFSSDNRQIV 144
Query: 209 RRHRNG---LW------------IKHFDAISSLSMSEDQN--LLYSASWDKTFKVWRTSD 251
R+ LW H + +S + S + + ++ S WDK KVW ++
Sbjct: 145 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Query: 252 YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC 310
K + I H +N++ DG L +G DG +W +G KH ++ L
Sbjct: 205 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN-EG---KHLYT---LDGGD 257
Query: 311 AVTALAISPDAAIVYCGSSDGLVNFWERE 339
+ AL SP+ + C ++ + W+ E
Sbjct: 258 IINALCFSPNRYWL-CAATGPSIKIWDLE 285
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 88/222 (39%), Gaps = 35/222 (15%)
Query: 185 RVGTLPTFKDFI------------KCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ 232
++ T P F D I K + +NY +R G H +S + +S D
Sbjct: 43 QIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG----HSHFVSDVVISSDG 98
Query: 233 NLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRE 291
S SWD T ++W + + H V S+ D + +GS D T+K+W
Sbjct: 99 QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT- 157
Query: 292 LQGKGTKHFFSQTLLKQECAVTALAISPDAA---IVYCGSSDGLVNFWERELNLSHGGVL 348
G + Q E V+ + SP+++ IV CG D LV W NL++ +
Sbjct: 158 ---LGVCKYTVQDESHSEW-VSCVRFSPNSSNPIIVSCGW-DKLVKVW----NLANCKLK 208
Query: 349 RGH-----KLAILCLVTAGNLVFSGSADMSICIWRRKENEHI 385
H L + + G+L SG D +W E +H+
Sbjct: 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 28/152 (18%)
Query: 296 GTKHFFSQTLLKQECA-----------VTALAISPD-AAIVYCGSSDGLVNFWERELNLS 343
GT++ + Q+++ ++ VT +A +P ++ S D + W+ + +
Sbjct: 14 GTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET 73
Query: 344 HGGV----LRGHK--LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPV 397
+ G+ LRGH ++ + + + G SGS D ++ +W GH+ V
Sbjct: 74 NYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT--RRFVGHTKDV 131
Query: 398 KCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429
+A D+ + SGS DK++K+W
Sbjct: 132 LSVAFSSDNRQI--------VSGSRDKTIKLW 155
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 102/260 (39%), Gaps = 50/260 (19%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF 277
H +S +++S + N SASWD + ++W + +C + H V S+ D +
Sbjct: 66 HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIV 125
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+G D ++VW ++G+ H S+ + + S DA ++ G D LV W+
Sbjct: 126 SGGRDNALRVW--NVKGE-CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 338 RELNLSHGGV---LRGHKLAILCLVTA--GNLVFSGSADMSICIWRRKENE--------- 383
L+ G + L+GH + + + G+L S D +W + E
Sbjct: 183 ----LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA 238
Query: 384 ---HICLS-----MLTGHSGPVKCLAVEKDD--ESLSREKR-------------W----- 415
IC S M ++ +E D L+ E + W
Sbjct: 239 PINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGS 298
Query: 416 ILYSGSLDKSVKMWRVSEQA 435
LYSG D +++W VSE A
Sbjct: 299 TLYSGYTDNVIRVWGVSENA 318
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 107/295 (36%), Gaps = 59/295 (20%)
Query: 108 REEGHI-----YSLAAAGDLLYTGSDSKNIRVWKNQREFSGFK----SNSGLVKAIVISN 158
R EGH +L+ G+ + S ++R+W Q +K + L A N
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218
+I SG +D +RVW V + R D++ C VR
Sbjct: 122 RQIVSGGRDNALRVWNVKGECMHTLSR----GAHTDWVSC---------VR--------- 159
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF 277
S S D ++ S WD KVW + + + + H + V S+ DG L
Sbjct: 160 -------FSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCA 212
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ DG ++W +G+ + + Q C SP+ + + G+ F
Sbjct: 213 SSDKDGVARLWDLT-KGEALSEMAAGAPINQIC------FSPNRYWMCAATEKGIRIFDL 265
Query: 338 R------ELNLSHGGVLRGHKLAILCLVTA----GNLVFSGSADMSICIWRRKEN 382
EL H G K+ C+ A G+ ++SG D I +W EN
Sbjct: 266 ENKDIIVELAPEHQG---SKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSEN 317
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 25/173 (14%)
Query: 217 IKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV--NSIVAGFDG 274
I H + SLS + ++ S SWDKT KVW+ + ++ AH+ +V +V+ +
Sbjct: 101 IGHQGNVCSLSFQD--GVVISGSWDKTAKVWKEG--SLVYNLQAHNASVWDAKVVSFSEN 156
Query: 275 LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVN 334
T SAD T+K+W+ + K K F V LA+ D + C S+DGL+
Sbjct: 157 KFLTASADKTIKLWQND---KVIKTFSG----IHNDVVRHLAVVDDGHFISC-SNDGLIK 208
Query: 335 FWERELNLSHGGVLR---GHKLAILC--LVTAGNLVFSGSADMSICIWRRKEN 382
++ G VLR GH+ + C L+ G++V G D ++ IW KEN
Sbjct: 209 L----VDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE-DRTVRIW-SKEN 255
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 88/202 (43%), Gaps = 20/202 (9%)
Query: 105 SLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLV---KAIVISNEKI 161
+L+ +G++ SL+ ++ +GS K +VWK ++++ V K + S K
Sbjct: 99 TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKF 158
Query: 162 FSGHQDGKIRVW---KVSSKDASIHKRVGT-LPTFKD--FIKCS------MKPSNYIEVR 209
+ D I++W KV + IH V L D FI CS + + +V
Sbjct: 159 LTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVL 218
Query: 210 RHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV 269
R G H + + + + +++ S D+T ++W + + + ++ S+
Sbjct: 219 RTYEG----HESFVYCIKLLPNGDIV-SCGEDRTVRIWSKENGSLKQVITLPAISIWSVD 273
Query: 270 AGFDGLVFTGSADGTVKVWRRE 291
+G + GS+D V+++ +E
Sbjct: 274 CXSNGDIIVGSSDNLVRIFSQE 295
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 23/155 (14%)
Query: 280 SADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
S DGTV++W ++ Q GT + Q L C + ++ G D +N
Sbjct: 36 SRDGTVRLWSKDDQWLGTVVYTGQGFLNSVC------YDSEKELLLFGGKDTXIN--GVP 87
Query: 340 LNLSHGG----VLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSG 395
L + G L GH+ + L +V SGS D + +W+ E + L H+
Sbjct: 88 LFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK----EGSLVYNLQAHNA 143
Query: 396 PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430
V V S S K + S DK++K+W+
Sbjct: 144 SVWDAKV----VSFSENK---FLTASADKTIKLWQ 171
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 22/207 (10%)
Query: 233 NLLYSASWDKTFKVWRTS-DYKCLESVIA--HDDAVNSIVAGFDG-LVFTGSADGTVKVW 288
LL S D+ ++W T D +SV++ H V + G + + S D T +W
Sbjct: 29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88
Query: 289 RRELQGKGTKHFFSQTLLK-QECAVTALAISPDAAIVYCGSSDGLVNFWE--RELNLSHG 345
+ K F T L+ E V ++A +P ++ S D V WE E
Sbjct: 89 K-----KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV 143
Query: 346 GVLRGHKLAILCLV--TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE 403
VL H + +V + L+ S S D ++ ++R +E++ +C + L GH V LA +
Sbjct: 144 SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD 203
Query: 404 KDDESLSREKRWILYSGSLDKSVKMWR 430
+ L+ S S D++V++WR
Sbjct: 204 PSGQRLA--------SCSDDRTVRIWR 222
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 315 LAISPDAAIVYCGSSDGLVNFWERELN--LSHGGVLRGHKLAI--LCLVTAGNLVFSGSA 370
LA +P ++ D + W E + + + GH+ + + GN + S S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 371 DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430
D + CIW++ +++ C++ L GH VK +A +L + S DKSV +W
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN--------LLATCSRDKSVWVWE 133
Query: 431 VSEQ 434
V E+
Sbjct: 134 VDEE 137
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 9/162 (5%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRT---SDYKCLESVIAHDDAVNSIVA-GFDG 274
H + + S++ + NLL + S DK+ VW +Y+C+ + +H V +V
Sbjct: 104 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163
Query: 275 LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVN 334
L+ + S D TVK++R E TL E V +LA P + S D V
Sbjct: 164 LLASASYDDTVKLYREEED----DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVR 219
Query: 335 FWERELNLSHGGV-LRGHKLAILCLVTAGNLVFSGSADMSIC 375
W + L + GV G + C+ T D++ C
Sbjct: 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC 261
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 108/277 (38%), Gaps = 63/277 (22%)
Query: 93 NDDGFSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQRE-----FSGFK 145
N D F + +L E + S+A A G+LL T S K++ VW+ E S
Sbjct: 91 NQDDFE---CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN 147
Query: 146 SNSGLVKAIVI--SNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPS 203
S++ VK +V S E + S D +++++ D++ C+
Sbjct: 148 SHTQDVKHVVWHPSQELLASASYDDTVKLYREEE---------------DDWVCCAT--- 189
Query: 204 NYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT-------------S 250
+ H + +W SL+ L S S D+T ++WR S
Sbjct: 190 ----LEGHESTVW--------SLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237
Query: 251 D--YKCLESVIA-HDDAVNSIV-AGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLL 306
D +KC+ ++ H + I G + T D ++V++ + + FS T
Sbjct: 238 DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH 297
Query: 307 KQEC---AVTALAISP-DAAIVYCGSSDGLVNFWERE 339
+ V +A +P + ++ S DG V FW+ +
Sbjct: 298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 128/316 (40%), Gaps = 47/316 (14%)
Query: 101 VLIGSLVREEGHIYSLAAAG---DLLYTGSDSKNIRVWK---NQREFS----GFKSNSGL 150
VL G+L G + SLA + +LL + S K + WK + ++F FK +S +
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 151 VKAIVISNEKIF--SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV 208
V+ ++ + + S D +R+W V++ + ++R + + K S I
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGET--YQRFVGHKSDVXSVDIDKKASXIISG 125
Query: 209 RRHR-----------------NGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD 251
R + + W+ + + +D + SA DK K W +
Sbjct: 126 SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQ 185
Query: 252 YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC 310
++ I H+ +N++ A DG L+ + DG + +W L K + TL Q+
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW--NLAAKKAXY----TLSAQD- 238
Query: 311 AVTALAISPDAAIVYCGSSDGLVNF------WERELNLSHGGVLRGHKLAILCLVTA--G 362
V +LA SP+ + ++ G+ F +L G + + + L + G
Sbjct: 239 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 363 NLVFSGSADMSICIWR 378
+F+G D I +W+
Sbjct: 299 QTLFAGYTDNVIRVWQ 314
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 348 LRGHKLAIL-CLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405
+GH + C +TA G S S D ++ +W E GH V + ++K
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE--TYQRFVGHKSDVXSVDIDK- 117
Query: 406 DESLSREKRWILYSGSLDKSVKMWRVSEQ 434
K + SGS DK++K+W + Q
Sbjct: 118 -------KASXIISGSRDKTIKVWTIKGQ 139
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 58/255 (22%)
Query: 101 VLIGSLVREEGHIYSLAAAG---DLLYTGSDSKNIRVWK---NQREFS----GFKSNSGL 150
VL G+L G + SLA + +LL + S K + WK + ++F FK +S +
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 151 VKAIVISNEKIF--SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV 208
V+ ++ + + S D +R+W V++ + T++ F+
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG----------- 105
Query: 209 RRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI 268
H + S+ + + +++ S S DKT KVW T +CL +++ H+D V+ +
Sbjct: 106 ----------HKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQV 154
Query: 269 ------VAGFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA 321
A D + + + D VK W + + + L SPD
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLN------QFQIEADFIGHNSNINTLTASPDG 208
Query: 322 AIVYCGSSDGLVNFW 336
++ DG + W
Sbjct: 209 TLIASAGKDGEIMLW 223
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 23/171 (13%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI-VAGFDGLVF 277
H + +++ D SASWDKT ++W + + + + H V S+ + ++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP------DAAIVYCGSSDG 331
+GS D T+KVW + Q TLL V+ + + P D+ + +D
Sbjct: 124 SGSRDKTIKVWTIKGQCLA-------TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 332 LVNFWERELNLSHGGV---LRGHKLAILCLVTA--GNLVFSGSADMSICIW 377
+V W NL+ + GH I L + G L+ S D I +W
Sbjct: 177 MVKAW----NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 348 LRGHKLAIL-CLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405
+GH + C +TA G S S D ++ +W E GH V + ++K
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE--TYQRFVGHKSDVMSVDIDK- 117
Query: 406 DESLSREKRWILYSGSLDKSVKMWRVSEQ 434
K ++ SGS DK++K+W + Q
Sbjct: 118 -------KASMIISGSRDKTIKVWTIKGQ 139
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 58/255 (22%)
Query: 101 VLIGSLVREEGHIYSLAAAG---DLLYTGSDSKNIRVWK---NQREFS----GFKSNSGL 150
VL G+L G + SLA + +LL + S K + WK + ++F FK +S +
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 151 VKAIVISNEKIF--SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV 208
V+ ++ + + S D +R+W V++ + T++ F+
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG----------- 105
Query: 209 RRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI 268
H + S+ + + +++ S S DKT KVW T +CL +++ H+D V+ +
Sbjct: 106 ----------HKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQV 154
Query: 269 ------VAGFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA 321
A D + + + D VK W + + + L SPD
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLN------QFQIEADFIGHNSNINTLTASPDG 208
Query: 322 AIVYCGSSDGLVNFW 336
++ DG + W
Sbjct: 209 TLIASAGKDGEIMLW 223
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 23/171 (13%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI-VAGFDGLVF 277
H + +++ D SASWDKT ++W + + + + H V S+ + ++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP------DAAIVYCGSSDG 331
+GS D T+KVW + Q TLL V+ + + P D+ + +D
Sbjct: 124 SGSRDKTIKVWTIKGQCLA-------TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 332 LVNFWERELNLSHGGV---LRGHKLAILCLVTA--GNLVFSGSADMSICIW 377
+V W NL+ + GH I L + G L+ S D I +W
Sbjct: 177 MVKAW----NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 348 LRGHKLAIL-CLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405
+GH + C +TA G S S D ++ +W E GH V + ++K
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE--TYQRFVGHKSDVMSVDIDK- 117
Query: 406 DESLSREKRWILYSGSLDKSVKMWRVSEQ 434
K ++ SGS DK++K+W + Q
Sbjct: 118 -------KASMIISGSRDKTIKVWTIKGQ 139
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 58/255 (22%)
Query: 101 VLIGSLVREEGHIYSLAAAG---DLLYTGSDSKNIRVWK---NQREFS----GFKSNSGL 150
VL G+L G + SLA + +LL + S K + WK + ++F FK +S +
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 151 VKAIVISNEKIF--SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV 208
V+ ++ + + S D +R+W V++ + T++ F+
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG----------- 105
Query: 209 RRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI 268
H + S+ + + +++ S S DKT KVW T +CL +++ H+D V+ +
Sbjct: 106 ----------HKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQV 154
Query: 269 ------VAGFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA 321
A D + + + D VK W + + + L SPD
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLN------QFQIEADFIGHNSNINTLTASPDG 208
Query: 322 AIVYCGSSDGLVNFW 336
++ DG + W
Sbjct: 209 TLIASAGKDGEIMLW 223
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 23/171 (13%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI-VAGFDGLVF 277
H + +++ D SASWDKT ++W + + + + H V S+ + ++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP------DAAIVYCGSSDG 331
+GS D T+KVW + Q TLL V+ + + P D+ + +D
Sbjct: 124 SGSRDKTIKVWTIKGQCLA-------TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 332 LVNFWERELNLSHGGV---LRGHKLAILCLVTA--GNLVFSGSADMSICIW 377
+V W NL+ + GH I L + G L+ S D I +W
Sbjct: 177 MVKAW----NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 348 LRGHKLAIL-CLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405
+GH + C +TA G S S D ++ +W E GH V + ++K
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE--TYQRFVGHKSDVMSVDIDK- 117
Query: 406 DESLSREKRWILYSGSLDKSVKMWRVSEQ 434
K ++ SGS DK++K+W + Q
Sbjct: 118 -------KASMIISGSRDKTIKVWTIKGQ 139
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 58/255 (22%)
Query: 101 VLIGSLVREEGHIYSLAAAG---DLLYTGSDSKNIRVWK---NQREFS----GFKSNSGL 150
VL G+L G + SLA + +LL + S K + WK + ++F FK +S +
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 151 VKAIVISNEKIF--SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV 208
V+ ++ + + S D +R+W V++ + T++ F+
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG----------- 105
Query: 209 RRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI 268
H + S+ + + +++ S S DKT KVW T +CL +++ H+D V+ +
Sbjct: 106 ----------HKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQV 154
Query: 269 ------VAGFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA 321
A D + + + D VK W + + + L SPD
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLN------QFQIEADFIGHNSNINTLTASPDG 208
Query: 322 AIVYCGSSDGLVNFW 336
++ DG + W
Sbjct: 209 TLIASAGKDGEIMLW 223
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 23/171 (13%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI-VAGFDGLVF 277
H + +++ D SASWDKT ++W + + + + H V S+ + ++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP------DAAIVYCGSSDG 331
+GS D T+KVW + Q TLL V+ + + P D+ + +D
Sbjct: 124 SGSRDKTIKVWTIKGQCLA-------TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 332 LVNFWERELNLSHGGV---LRGHKLAILCLVTA--GNLVFSGSADMSICIW 377
+V W NL+ + GH I L + G L+ S D I +W
Sbjct: 177 MVKAW----NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 348 LRGHKLAIL-CLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405
+GH + C +TA G S S D ++ +W E GH V + ++K
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE--TYQRFVGHKSDVMSVDIDK- 117
Query: 406 DESLSREKRWILYSGSLDKSVKMWRVSEQ 434
K ++ SGS DK++K+W + Q
Sbjct: 118 -------KASMIISGSRDKTIKVWTIKGQ 139
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 58/255 (22%)
Query: 101 VLIGSLVREEGHIYSLAAAG---DLLYTGSDSKNIRVWK---NQREFS----GFKSNSGL 150
VL G+L G + SLA + +LL + S K + WK + ++F FK +S +
Sbjct: 2 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 61
Query: 151 VKAIVISNEKIF--SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV 208
V+ ++ + + S D +R+W V++ + T++ F+
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG----------- 99
Query: 209 RRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI 268
H + S+ + + +++ S S DKT KVW T +CL +++ H+D V+ +
Sbjct: 100 ----------HKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQV 148
Query: 269 ------VAGFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA 321
A D + + + D VK W + + + L SPD
Sbjct: 149 RVVPNEKADDDSVTIISAGNDKMVKAWNLN------QFQIEADFIGHNSNINTLTASPDG 202
Query: 322 AIVYCGSSDGLVNFW 336
++ DG + W
Sbjct: 203 TLIASAGKDGEIMLW 217
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 23/171 (13%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI-VAGFDGLVF 277
H + +++ D SASWDKT ++W + + + + H V S+ + ++
Sbjct: 58 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 117
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP------DAAIVYCGSSDG 331
+GS D T+KVW + Q TLL V+ + + P D+ + +D
Sbjct: 118 SGSRDKTIKVWTIKGQCLA-------TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 332 LVNFWERELNLSHGGV---LRGHKLAILCLVTA--GNLVFSGSADMSICIW 377
+V W NL+ + GH I L + G L+ S D I +W
Sbjct: 171 MVKAW----NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 348 LRGHKLAIL-CLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405
+GH + C +TA G S S D ++ +W E GH V + ++K
Sbjct: 55 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE--TYQRFVGHKSDVMSVDIDK- 111
Query: 406 DESLSREKRWILYSGSLDKSVKMWRVSEQ 434
K ++ SGS DK++K+W + Q
Sbjct: 112 -------KASMIISGSRDKTIKVWTIKGQ 133
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 23/213 (10%)
Query: 232 QNLLYSASWDKTFKVW--RTSDYKCLESV--IAHDDAVNSIVAG-FDGLVFTGSADGTVK 286
Q +L + S D+ K+ + D+ ++ + AH A+ S+ L+ GS D TV
Sbjct: 24 QGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83
Query: 287 VWRRELQGKGTKHFFSQTLLK----QECAVTALAISPDAAIVYCGSSDGLVNFWERELNL 342
+W +E T F LL E V +A S D + S D V WE + +
Sbjct: 84 IWAKEESADRT---FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG 140
Query: 343 SHG---GVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPV 397
VL+ H + ++ + L+ S S D ++ IW+ +++ C+++L GH G V
Sbjct: 141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV 200
Query: 398 KCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430
+K E + R L SGS D +V++W+
Sbjct: 201 WSSDFDK-TEGVFR-----LCSGSDDSTVRVWK 227
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 107/277 (38%), Gaps = 53/277 (19%)
Query: 85 VSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFSG- 143
VS+ + D L+ + E + +A + D Y + S++ VW + + SG
Sbjct: 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE 141
Query: 144 -------FKSNSGLVKAIVI--SNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKD 194
+ +S VK ++ S + S D +R+WK + D
Sbjct: 142 EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWK----------------DYDD 185
Query: 195 FIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWR------ 248
+C + H +W FD +E L S S D T +VW+
Sbjct: 186 DWECVAVLNG------HEGTVWSSDFDK------TEGVFRLCSGSDDSTVRVWKYMGDDE 233
Query: 249 --TSDYKCLESVI--AHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQT 304
++ C E+++ H V ++ GF+GL+ + ADG + V+ E+ G+ K F +
Sbjct: 234 DDQQEWVC-EAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYE-EVDGEW-KVFAKRA 290
Query: 305 LLK--QECAVTALAISPDAAIVYCGSSDGLVNFWERE 339
L E V I+ G DG+VNFW E
Sbjct: 291 LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 365 VFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK 424
V SGS D+++ +W EN GH V C+A D S SG LD+
Sbjct: 112 VLSGSDDLTVKLWNW-ENNWALEQTFEGHEHFVMCVAFNPKDPS-------TFASGCLDR 163
Query: 425 SVKMWRVSEQAPPLVSTTQQH 445
+VK+W + + P TT Q
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQE 184
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 76/194 (39%), Gaps = 24/194 (12%)
Query: 248 RTSDYKCLESVI---AHDDAVNSI-VAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQ 303
R +Y E V+ AH D + SI V V +GS D TVK+W E Q
Sbjct: 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE-----NNWALEQ 134
Query: 304 TLLKQECAVTALAISP-DAAIVYCGSSDGLVNFW---ERELNLS-HGGVLRGHKLAILCL 358
T E V +A +P D + G D V W + N + G RG
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 359 VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY 418
+ + + S D++I IW + C++ L GH V ++ I+
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKS--CVATLEGHMSNVSF--------AVFHPTLPIII 244
Query: 419 SGSLDKSVKMWRVS 432
SGS D ++K+W S
Sbjct: 245 SGSEDGTLKIWNSS 258
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 231 DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVN-SIVAGFDGLVFTGSADGTVKVW 288
D+ + +AS D T K+W C+ ++ H V+ ++ ++ +GS DGT+K+W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 365 VFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK 424
V SGS D+++ +W EN GH V C+A D S SG LD+
Sbjct: 112 VLSGSDDLTVKLWNW-ENNWALEQTFEGHEHFVMCVAFNPKDPS-------TFASGCLDR 163
Query: 425 SVKMWRVSEQAPPLVSTTQQH 445
+VK+W + + P TT Q
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQE 184
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 76/194 (39%), Gaps = 24/194 (12%)
Query: 248 RTSDYKCLESVI---AHDDAVNSI-VAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQ 303
R +Y E V+ AH D + SI V V +GS D TVK+W E Q
Sbjct: 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE-----NNWALEQ 134
Query: 304 TLLKQECAVTALAISP-DAAIVYCGSSDGLVNFW---ERELNLS-HGGVLRGHKLAILCL 358
T E V +A +P D + G D V W + N + G RG
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 359 VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY 418
+ + + S D++I IW + C++ L GH V ++ I+
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKS--CVATLEGHMSNVSF--------AVFHPTLPIII 244
Query: 419 SGSLDKSVKMWRVS 432
SGS D ++K+W S
Sbjct: 245 SGSEDGTLKIWNSS 258
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 231 DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVN-SIVAGFDGLVFTGSADGTVKVW 288
D+ + +AS D T K+W C+ ++ H V+ ++ ++ +GS DGT+K+W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 121/332 (36%), Gaps = 85/332 (25%)
Query: 120 GDLLYTGSDSKNIRVWKNQREFSG------------FKSNSGLVKAI-VISNEKIFSGHQ 166
G T SD + IRVW+ ++ F+ N +V A+ I ++ +G +
Sbjct: 901 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAG-K 959
Query: 167 DGKIRVW---KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI 223
G+I +VS S H IK P+N R +G + H A+
Sbjct: 960 TGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN----RVFSSG--VGHKKAV 1013
Query: 224 SSLSMSEDQNLLYSASWDKTFKVW--RTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSA 281
+ + D L S+S D +VW +T DY L+ AH + V D + + S
Sbjct: 1014 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ---AHQETVKDFRLLQDSRLLSWSF 1070
Query: 282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN 341
DGTVKVW + G+ + F + V + AIS DA S+D W +L
Sbjct: 1071 DGTVKVWNV-ITGRIERDFTCH-----QGTVLSCAISSDATKFSSTSADKTAKIWSFDL- 1123
Query: 342 LSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLA 401
LS L L GH+G V+C A
Sbjct: 1124 LSP------------------------------------------LHELKGHNGCVRCSA 1141
Query: 402 VEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
D +L +G + +++W VS+
Sbjct: 1142 FSLDG--------ILLATGDDNGEIRIWNVSD 1165
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 85/216 (39%), Gaps = 27/216 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFT 278
H + + S D + +AS D+T +VW T C S I ++ + + +V
Sbjct: 888 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV-CKNSAIVLKQEIDVVFQENETMVL- 945
Query: 279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER 338
+ D R LQ K Q E V+ +SP V G DG + E
Sbjct: 946 -AVDNI-----RGLQLIAGKT--GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL 997
Query: 339 ELN-LSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSG 395
N + GV GHK A+ + G + S S D I +W + +++ L H
Sbjct: 998 PNNRVFSSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV---FLQAHQE 1052
Query: 396 PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431
VK D L ++ R L S S D +VK+W V
Sbjct: 1053 TVK-------DFRLLQDSR--LLSWSFDGTVKVWNV 1079
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG---- 274
H D + + S D + + + S DK K+W ++ K + + H + VN F
Sbjct: 663 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVN--CCHFTNKSNH 720
Query: 275 -LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV 333
L+ TGS D +K+W +L K ++ T+ +V SPD ++ S+DG +
Sbjct: 721 LLLATGSNDFFLKLW--DLNQKECRN----TMFGHTNSVNHCRFSPDDELLASCSADGTL 774
Query: 334 NFWE 337
W+
Sbjct: 775 RLWD 778
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 20/175 (11%)
Query: 261 HDDAVNSIVAGFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP 319
H DAV DG + + AD T++V++ E G K + E V A S
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAE---TGEKLL---DIKAHEDEVLCCAFSS 674
Query: 320 DAAIVYCGSSDGLVNFWEREL-NLSHGGVLRGHKLAILCLVTAGN--LVFSGSADMSICI 376
D + + S+D V W+ L H ++ N L+ +GS D + +
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
Query: 377 WRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431
W + E C + + GH+ V DDE +L S S D ++++W V
Sbjct: 735 WDLNQKE--CRNTMFGHTNSVNHCRFSPDDE--------LLASCSADGTLRLWDV 779
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 121/332 (36%), Gaps = 85/332 (25%)
Query: 120 GDLLYTGSDSKNIRVWKNQREFSG------------FKSNSGLVKAI-VISNEKIFSGHQ 166
G T SD + IRVW+ ++ F+ N +V A+ I ++ +G +
Sbjct: 894 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAG-K 952
Query: 167 DGKIRVW---KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI 223
G+I +VS S H IK P+N R +G + H A+
Sbjct: 953 TGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN----RVFSSG--VGHKKAV 1006
Query: 224 SSLSMSEDQNLLYSASWDKTFKVW--RTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSA 281
+ + D L S+S D +VW +T DY L+ AH + V D + + S
Sbjct: 1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ---AHQETVKDFRLLQDSRLLSWSF 1063
Query: 282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN 341
DGTVKVW + G+ + F + V + AIS DA S+D W +L
Sbjct: 1064 DGTVKVWNV-ITGRIERDFTCH-----QGTVLSCAISSDATKFSSTSADKTAKIWSFDL- 1116
Query: 342 LSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLA 401
LS L L GH+G V+C A
Sbjct: 1117 LSP------------------------------------------LHELKGHNGCVRCSA 1134
Query: 402 VEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
D +L +G + +++W VS+
Sbjct: 1135 FSLDG--------ILLATGDDNGEIRIWNVSD 1158
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 85/216 (39%), Gaps = 27/216 (12%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFT 278
H + + S D + +AS D+T +VW T C S I ++ + + +V
Sbjct: 881 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV-CKNSAIVLKQEIDVVFQENETMVL- 938
Query: 279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER 338
+ D R LQ K Q E V+ +SP V G DG + E
Sbjct: 939 -AVDNI-----RGLQLIAGKT--GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL 990
Query: 339 ELN-LSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSG 395
N + GV GHK A+ + G + S S D I +W + +++ L H
Sbjct: 991 PNNRVFSSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV---FLQAHQE 1045
Query: 396 PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431
VK D L ++ R L S S D +VK+W V
Sbjct: 1046 TVK-------DFRLLQDSR--LLSWSFDGTVKVWNV 1072
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG---- 274
H D + + S D + + + S DK K+W ++ K + + H + VN F
Sbjct: 656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVN--CCHFTNKSNH 713
Query: 275 -LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV 333
L+ TGS D +K+W +L K ++ T+ +V SPD ++ S+DG +
Sbjct: 714 LLLATGSNDFFLKLW--DLNQKECRN----TMFGHTNSVNHCRFSPDDELLASCSADGTL 767
Query: 334 NFWE 337
W+
Sbjct: 768 RLWD 771
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 20/175 (11%)
Query: 261 HDDAVNSIVAGFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP 319
H DAV DG + + AD T++V++ E G K + E V A S
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAE---TGEKLL---DIKAHEDEVLCCAFSS 667
Query: 320 DAAIVYCGSSDGLVNFWEREL-NLSHGGVLRGHKLAILCLVTAGN--LVFSGSADMSICI 376
D + + S+D V W+ L H ++ N L+ +GS D + +
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 377 WRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431
W + E C + + GH+ V DDE +L S S D ++++W V
Sbjct: 728 WDLNQKE--CRNTMFGHTNSVNHCRFSPDDE--------LLASCSADGTLRLWDV 772
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 365 VFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK 424
V SGS D+++ +W EN GH V C+A D S SG LD+
Sbjct: 112 VLSGSDDLTVKLWNW-ENNWALEQTFEGHEHFVMCVAFNPKDPS-------TFASGCLDR 163
Query: 425 SVKMWRVSEQAPPLVSTTQQ 444
+VK+W + + P TT Q
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQ 183
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 74/194 (38%), Gaps = 24/194 (12%)
Query: 248 RTSDYKCLESVI---AHDDAVNSI-VAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQ 303
R +Y E V+ AH D + SI V V +GS D TVK+W E Q
Sbjct: 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE-----NNWALEQ 134
Query: 304 TLLKQECAVTALAISP-DAAIVYCGSSDGLVNFW---ERELNLS-HGGVLRGHKLAILCL 358
T E V +A +P D + G D V W + N + G RG
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 359 VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY 418
+ + + S D++I IW + C++ L GH V I+
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLP--------III 244
Query: 419 SGSLDKSVKMWRVS 432
SGS D ++K+W S
Sbjct: 245 SGSEDGTLKIWNSS 258
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 231 DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVN-SIVAGFDGLVFTGSADGTVKVW 288
D+ + +AS D T K+W C+ ++ H V+ ++ ++ +GS DGT+K+W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 365 VFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK 424
V SGS D+++ +W EN GH V C+A D S SG LD+
Sbjct: 112 VLSGSDDLTVKLWNW-ENNWALEQTFEGHEHFVMCVAFNPKDPS-------TFASGCLDR 163
Query: 425 SVKMWRVSEQAPPLVSTTQQ 444
+VK+W + + P TT Q
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQ 183
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 74/194 (38%), Gaps = 24/194 (12%)
Query: 248 RTSDYKCLESVI---AHDDAVNSI-VAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQ 303
R +Y E V+ AH D + SI V V +GS D TVK+W E Q
Sbjct: 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE-----NNWALEQ 134
Query: 304 TLLKQECAVTALAISP-DAAIVYCGSSDGLVNFW---ERELNLS-HGGVLRGHKLAILCL 358
T E V +A +P D + G D V W + N + G RG
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 359 VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY 418
+ + + S D++I IW + C++ L GH V I+
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLP--------III 244
Query: 419 SGSLDKSVKMWRVS 432
SGS D ++K+W S
Sbjct: 245 SGSEDGTLKIWNSS 258
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 231 DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVN-SIVAGFDGLVFTGSADGTVKVW 288
D+ + +AS D T K+W C+ ++ H V+ ++ ++ +GS DGT+K+W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 44/188 (23%)
Query: 264 AVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAI 323
++NS+ A + +GS D TV++W + + + + E + ++ PD
Sbjct: 212 SINSLNAN---MFISGSCDTTVRLWDLRITSRAVRTYHGH-----EGDINSVKFFPDGQR 263
Query: 324 VYCGSSDGLVNFWERELNLSHGGVLRGHKLAI-----------LCLVTA------GNLVF 366
GS DG ++ GH+L + L +VT+ G L+F
Sbjct: 264 FGTGSDDGTCRLFDMR---------TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLF 314
Query: 367 SGSADMSICIWRRKENEHICL--SMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK 424
+G ++ +W E + ++ H G + CL + D +L +GS DK
Sbjct: 315 AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALC--------TGSWDK 366
Query: 425 SVKMWRVS 432
++K+W S
Sbjct: 367 NLKIWAFS 374
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 28/101 (27%)
Query: 153 AIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHR 212
A IS +F+G+ +G VW D + + V L T ++
Sbjct: 305 AFSISGRLLFAGYSNGDCYVW-----DTLLAEMVLNLGTLQN------------------ 341
Query: 213 NGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK 253
H IS L +S D + L + SWDK K+W S ++
Sbjct: 342 -----SHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNS---IVAGFDGL 275
H D + + S D + + S DK K+W + + + + H + VN + L
Sbjct: 662 HEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLL 721
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ TGS+D +K+W +L K ++ T+ +V SPD ++ S+DG +
Sbjct: 722 LATGSSDCFLKLW--DLNQKECRN----TMFGHTNSVNHCRFSPDDKLLASCSADGTLKL 775
Query: 336 WE 337
W+
Sbjct: 776 WD 777
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 84/222 (37%), Gaps = 45/222 (20%)
Query: 123 LYTGSDSKNIRVWKNQREFSGF-KSNSGLVKAI-VISNEKIFSGHQDGKIRVWKVSSKDA 180
L + SD I+VW Q + F + + VK ++ N ++ S DG ++VW + + +
Sbjct: 1024 LISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNK 1083
Query: 181 SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW 240
KDF+ C H + S +S D S S
Sbjct: 1084 E-----------KDFV-C--------------------HQGTVLSCDISHDATKFSSTSA 1111
Query: 241 DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKH 299
DKT K+W L + H+ V D L+ TG +G +++W G
Sbjct: 1112 DKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV---SNGELL 1168
Query: 300 FFSQTLLKQECA-----VTALAISPDAAIVYCGSSDGLVNFW 336
L ++ A VT L SPD ++ S+ G + +W
Sbjct: 1169 HLCAPLSEEGAATHGGWVTDLCFSPDGKMLI--SAGGYIKWW 1208
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF---DGL 275
H DA+ SED + S DKT +V++ + L + AH+D V + F D
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEV--LCCAFSTDDRF 677
Query: 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335
+ T S D VK+W + G+ + + C T S ++ GSSD +
Sbjct: 678 IATCSVDKKVKIW-NSMTGELVHTYDEHSEQVNCCHFTN---SSHHLLLATGSSDCFLKL 733
Query: 336 WE 337
W+
Sbjct: 734 WD 735
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 78/214 (36%), Gaps = 23/214 (10%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFT 278
H + + S D + ++S D+T ++W T C S + V+ + + +V
Sbjct: 887 HLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKV-CKNSAVMLKQEVDVVFQENEVMVL- 944
Query: 279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER 338
+ R +L T T E V+ +SP + G +G + E
Sbjct: 945 ----AVDHIRRLQLINGRTGQIDYLT----EAQVSCCCLSPHLQYIAFGDENGAIEILEL 996
Query: 339 ELNLSHGGVLRGHKLAILCLVTAGN-LVFSGSADMSICIWRRKENEHICLSMLTGHSGPV 397
N + K TA + S S D I +W + ++ I L GH V
Sbjct: 997 VNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI---FLRGHQETV 1053
Query: 398 KCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431
K D L + R L S S D +VK+W +
Sbjct: 1054 K-------DFRLLKNSR--LLSWSFDGTVKVWNI 1078
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 226 LSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVF-TGSADGT 284
L+ SE N S DK VW +C+++ H+ VNS+ G F +GS D T
Sbjct: 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT 263
Query: 285 VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH 344
+++ +L+ +S+ + +++ S +++ G +D +N W+ L S
Sbjct: 264 CRLY--DLRADREVAIYSKESIIF--GASSVDFSLSGRLLFAGYNDYTINVWDV-LKGSR 318
Query: 345 GGVLRGH--KLAILCLVTAGNLVFSGSADMSICIW 377
+L GH +++ L + G SGS D ++ +W
Sbjct: 319 VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 38/135 (28%)
Query: 119 AGDLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKA----IVISNEKIFSGHQDGKIRV 172
+GD +GSD R++ + RE + + S + A +S +F+G+ D I V
Sbjct: 251 SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINV 310
Query: 173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ 232
W V ++ R + H + +S+L +S D
Sbjct: 311 WDV--------------------------------LKGSRVSILFGHENRVSTLRVSPDG 338
Query: 233 NLLYSASWDKTFKVW 247
S SWD T +VW
Sbjct: 339 TAFCSGSWDHTLRVW 353
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 224 SSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVF-TGSAD 282
SS+ S LL++ D T VW + + H++ V+++ DG F +GS D
Sbjct: 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD 347
Query: 283 GTVKVW 288
T++VW
Sbjct: 348 HTLRVW 353
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 217 IKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH---DDAVNSIVAGFD 273
+ H ++ L+ S D + SAS DKT K+W + K +++ +D I+
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 295
Query: 274 GLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV 333
LV + SA+G + EL Q A+TAL+ S D ++ ++G +
Sbjct: 296 ALV-SISANGFINFVNPELGS------IDQVRYGHNKAITALSSSADGKTLFSADAEGHI 348
Query: 334 NFWERELNLSH 344
N W+ +S+
Sbjct: 349 NSWDISTGISN 359
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 19/155 (12%)
Query: 154 IVISNEKIFS--GHQDGKIRVWKVSSKDAS-----IHKRVGTLPTFKD---FIKCSMKPS 203
+ +SN+K F G QD K+ V+K+S S +H T F + F+ + +
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 513
Query: 204 NYIEVRRHRN------GLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW---RTSDYKC 254
I N W H ++ +S S D L + S D + VW + SD+
Sbjct: 514 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 573
Query: 255 LESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWR 289
+ +VNS++ + + + D +K W
Sbjct: 574 IIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 608
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 30/149 (20%)
Query: 142 SGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMK 201
+G ++ +G+ +S + I G + +W++ K++ + + F K
Sbjct: 89 AGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNK---------FAK---- 135
Query: 202 PSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH 261
+H D + +LS+ D S D + KVW S L+S AH
Sbjct: 136 ---------------YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH 180
Query: 262 DDAVNSIVA--GFDGLVFTGSADGTVKVW 288
VN + A G D + + DG + +W
Sbjct: 181 SSEVNCVAACPGKDTIFLSCGEDGRILLW 209
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 64/168 (38%), Gaps = 13/168 (7%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF 277
HF +S L++S++ S+SWDKT ++W + + H V S+ D +
Sbjct: 77 HF--VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL 134
Query: 278 TGSADGTVKVW------RRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG 331
+ A+ +K+W + K + + +A + P A DG
Sbjct: 135 SAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG 194
Query: 332 LVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIW 377
+ W + + + H+ + L + G + +G D + IW
Sbjct: 195 RLKVWNTNFQIRY--TFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 91/247 (36%), Gaps = 64/247 (25%)
Query: 122 LLYTGSDSKNIRVWK-NQREFSGF-----KSNSG---LVKAIVISNEKIF--SGHQDGKI 170
+L +GS K + +WK + E +G+ K+ +G V + +S E F S D +
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 171 RVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE 230
R+W + R GT T+K F+ H + S++ S
Sbjct: 101 RLWDL---------RTGT--TYKRFVG---------------------HQSEVYSVAFSP 128
Query: 231 DQNLLYSASWDKTFKVWRTSDYKCLESVIA--HDDAVNSI-----------VAGFDGLVF 277
D + SA ++ K+W S H D V+ + V F
Sbjct: 129 DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
+ DG +KVW Q T E V L+ISP+ + G D + W+
Sbjct: 189 SVGWDGRLKVWNTNFQ-------IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Query: 338 RELNLSH 344
LNL++
Sbjct: 242 I-LNLTY 247
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 28/129 (21%)
Query: 346 GVLRGHKLAILCLVTAGN--------LVFSGSADMSICIWRRKENEH-----ICLSMLTG 392
G+L GH + +V + ++ SGS D ++ IW+ E E I LTG
Sbjct: 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG 74
Query: 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGV 452
H+ V LA LS+E + + S S DK++++W L + T GH
Sbjct: 75 HNHFVSDLA-------LSQENCFAI-SSSWDKTLRLW-------DLRTGTTYKRFVGHQS 119
Query: 453 APNSLPYAP 461
S+ ++P
Sbjct: 120 EVYSVAFSP 128
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 28/232 (12%)
Query: 260 AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL--A 316
AH++ ++ V + G + T S+D T+K++ E G H TL E V + A
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE----GETHKLIDTLTGHEGPVWRVDWA 64
Query: 317 ISPDAAIVYCGSSDGLVNFWEREL-NLSHGGVLRGHKLAILCLVTA----GNLVFSGSAD 371
I+ S DG V W+ E S V H ++ + A G L+ S+D
Sbjct: 65 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124
Query: 372 MSICIWRRKENEHICLSMLTGHSGPVKCLA-----VEKDDESLSREKRWILYSGSLDKSV 426
+ + KEN ++ H+ V + +E+D E ++ +G D V
Sbjct: 125 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 184
Query: 427 KMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSF--------SSQGRIC 470
K+W+ + A V + LEGH + ++P+ SQ R C
Sbjct: 185 KIWKYNSDAQTYV---LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 59/156 (37%), Gaps = 14/156 (8%)
Query: 205 YIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDA 264
Y + G I H IS L ++ LL SAS D T ++W + H +
Sbjct: 232 YQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS 291
Query: 265 VNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA----VTALAISPD 320
+ S D V + S DG+V++W + TLL + A IS D
Sbjct: 292 IVSASWVGDDKVISCSMDGSVRLWSLK----------QNTLLALSIVDGVPIFAGRISQD 341
Query: 321 AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAIL 356
DG VN ++ + S L G++ IL
Sbjct: 342 GQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGIL 377
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 104 GSLVREEGHIYSLA--AAGDLLYTGSDSKNIRVW-----KNQREFSGFKSNSGLVKAIVI 156
G L+ G I L LL + SD +R+W +Q F G + +V A +
Sbjct: 241 GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS--IVSASWV 298
Query: 157 SNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTF 192
++K+ S DG +R+W + V +P F
Sbjct: 299 GDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 305 LLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG------VLRGHKLAILCL 358
L+ ++ L + ++ S DG + W HGG GH +I+
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIW-------HGGNGNSQNCFYGHSQSIVSA 295
Query: 359 VTAGN-LVFSGSADMSICIWRRKENEHICLSMLTG 392
G+ V S S D S+ +W K+N + LS++ G
Sbjct: 296 SWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDG 330
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 15/121 (12%)
Query: 346 GVLRGHK--LAILCLVTAGNLVFSGSADMSICIWRRKE-NEHICLSMLTGHSGPVKCLAV 402
G L GH +++L L+ S S D ++ IW N C GHS + +
Sbjct: 241 GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCF---YGHSQSIVSASW 297
Query: 403 EKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPS 462
DD+ + S S+D SV++W + + +S P+ ++ + YA +
Sbjct: 298 VGDDK---------VISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA 348
Query: 463 F 463
F
Sbjct: 349 F 349
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 28/232 (12%)
Query: 260 AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL--A 316
AH++ ++ V + G + T S+D T+K++ E G H TL E V + A
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVE----GETHKLIDTLTGHEGPVWRVDWA 62
Query: 317 ISPDAAIVYCGSSDGLVNFWERELN-LSHGGVLRGHKLAILCLVTA----GNLVFSGSAD 371
I+ S DG V W+ E S V H ++ + A G ++ S+D
Sbjct: 63 HPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD 122
Query: 372 MSICIWRRKENEHICLSMLTGHSGPVKCLA-----VEKDDESLSREKRWILYSGSLDKSV 426
+ + KEN ++ H+ V + +E+D E ++ +G D V
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182
Query: 427 KMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSF--------SSQGRIC 470
K+W+ + A V + LEGH + ++P+ SQ R C
Sbjct: 183 KIWKYNSDAQTYV---LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 83/221 (37%), Gaps = 53/221 (23%)
Query: 260 AHDDAVNSIVAGFDG-----LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTA 314
AHDDA+ S+ G + V TGS D VKVW+ + + +L + V +
Sbjct: 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKW----RDERLDLQWSLEGHQLGVVS 85
Query: 315 LAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSI 374
+ IS I S D + W+ E + G V A L FS +
Sbjct: 86 VDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGP-------VDAWTLAFSPDSQY-- 136
Query: 375 CIWRRKENEHICLSMLTG-HSGPVKCLAVE--KDDESLSREKRWI-----------LYSG 420
+ TG H G V VE K + SL ++I L SG
Sbjct: 137 --------------LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182
Query: 421 SLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP 461
++D + ++ ++ + H LEGH + SL ++P
Sbjct: 183 AIDGIINIFDIA-------TGKLLHTLEGHAMPIRSLTFSP 216
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 16/193 (8%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDGLVF 277
H + S+ +S + S+S D ++W + K ++S+ A DA + +
Sbjct: 79 HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLA 138
Query: 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337
TG+ G V ++ E G K + T K + ++A SPD + G+ DG++N ++
Sbjct: 139 TGTHVGKVNIFGVE---SGKKEYSLDTRGK---FILSIAYSPDGKYLASGAIDGIINIFD 192
Query: 338 REL-NLSHGGVLRGHKLAILCLVTA--GNLVFSGSADMSICIWRRKENEHICLS-MLTGH 393
L H L GH + I L + L+ + S D I I+ + +H L+ L+GH
Sbjct: 193 IATGKLLH--TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY---DVQHANLAGTLSGH 247
Query: 394 SGPVKCLAVEKDD 406
+ V +A DD
Sbjct: 248 ASWVLNVAFCPDD 260
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 28/232 (12%)
Query: 260 AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL--A 316
AH++ ++ V + G + T S+D T+K++ E G H TL E V + A
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE----GETHKLIDTLTGHEGPVWRVDWA 62
Query: 317 ISPDAAIVYCGSSDGLVNFWEREL-NLSHGGVLRGHKLAILCLVTA----GNLVFSGSAD 371
I+ S DG V W+ E S V H ++ + A G L+ S+D
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Query: 372 MSICIWRRKENEHICLSMLTGHSGPVKCLA-----VEKDDESLSREKRWILYSGSLDKSV 426
+ + KEN ++ H+ V + +E+D E ++ +G D V
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182
Query: 427 KMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSF--------SSQGRIC 470
K+W+ + A V + LEGH + ++P+ SQ R C
Sbjct: 183 KIWKYNSDAQTYV---LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 28/232 (12%)
Query: 260 AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL--A 316
AH++ ++ V + G + T S+D T+K++ E G H TL E V + A
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE----GETHKLIDTLTGHEGPVWRVDWA 62
Query: 317 ISPDAAIVYCGSSDGLVNFWERELN-LSHGGVLRGHKLAILCLVTA----GNLVFSGSAD 371
I+ S DG V W+ E S V H ++ + A G L+ S+D
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Query: 372 MSICIWRRKENEHICLSMLTGHSGPVKCLA-----VEKDDESLSREKRWILYSGSLDKSV 426
+ + KEN ++ H+ V + +E+D E ++ +G D V
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182
Query: 427 KMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSF--------SSQGRIC 470
K+W+ + A V + LEGH + ++P+ SQ R C
Sbjct: 183 KIWKYNSDAQTYV---LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNS---IVAGFDGL 275
H + + S+D + +++AS DKT K+W S + ++ + HD V + I A
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSC 143
Query: 276 VFTGSADGTVKVW 288
V TGS D T+K W
Sbjct: 144 VMTGSWDKTLKFW 156
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 356 LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRW 415
+C G+ VF+ S D + +W N+ I + H PVK + +
Sbjct: 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAI---QIAQHDAPVKTI------HWIKAPNYS 142
Query: 416 ILYSGSLDKSVKMWRVSEQAPPLV 439
+ +GS DK++K W P +V
Sbjct: 143 CVMTGSWDKTLKFWDTRSSNPMMV 166
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
GN + +GS + W +++ H+GPV + D + ++ S
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV--------FTAS 105
Query: 422 LDKSVKMWRVS 432
DK+ KMW +S
Sbjct: 106 CDKTAKMWDLS 116
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 28/232 (12%)
Query: 260 AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL--A 316
AH++ ++ V + G T S+D T+K++ E G H TL E V + A
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVE----GETHKLIDTLTGHEGPVWRVDWA 62
Query: 317 ISPDAAIVYCGSSDGLVNFWERELN-LSHGGVLRGHKLAILCLVTA----GNLVFSGSAD 371
I+ S DG V W+ E S V H ++ + A G + S+D
Sbjct: 63 HPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSD 122
Query: 372 MSICIWRRKENEHICLSMLTGHSGPVKCLA-----VEKDDESLSREKRWILYSGSLDKSV 426
+ + KEN ++ H+ V + +E+D E ++ +G D V
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182
Query: 427 KMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSF--------SSQGRIC 470
K+W+ + A V + LEGH + ++P+ SQ R C
Sbjct: 183 KIWKYNSDAQTYV---LESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTC 231
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 22/154 (14%)
Query: 117 AAAGDLLYTGSDSKNIRVWKNQREFSG------FKSNSGLVKAIVIS--NEKIFS---GH 165
A G L +G + + VW + G F + G VKA+ + + G
Sbjct: 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 218
Query: 166 QDGKIRVWKVSS----KDASIHKRVGTL---PTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218
D IR+W V S H +V ++ P +K+ I N + + ++ +
Sbjct: 219 SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA 278
Query: 219 ----HFDAISSLSMSEDQNLLYSASWDKTFKVWR 248
H + SL+MS D + SA+ D+T ++WR
Sbjct: 279 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/244 (19%), Positives = 95/244 (38%), Gaps = 38/244 (15%)
Query: 120 GDLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSS 177
G+ L G+ S +++W + Q+ S+S V ++ ++ + SG + G I V
Sbjct: 79 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRV 138
Query: 178 KDASIHKRVGTLPTFKDFIKCSMKPS------------NYIEVRRHR--NGLWI------ 217
+ V TL + C ++ + N + V G W+
Sbjct: 139 AE----HHVATLSGHSQEV-CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 193
Query: 218 KHFDAISSLSMSEDQ-NLLYSA--SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG 274
+H A+ +++ Q N+L + + D+ ++W CL +V AH + + +
Sbjct: 194 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK 253
Query: 275 LVFTGS--ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL 332
+ +G A + +W+ K + L V +L +SPD A V ++D
Sbjct: 254 ELISGHGFAQNQLVIWKYPTMAKVAE------LKGHTSRVLSLTMSPDGATVASAAADET 307
Query: 333 VNFW 336
+ W
Sbjct: 308 LRLW 311
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 22/154 (14%)
Query: 117 AAAGDLLYTGSDSKNIRVWKNQREFSG------FKSNSGLVKAIVIS--NEKIFS---GH 165
A G L +G + + VW + G F + G VKA+ + + G
Sbjct: 250 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 309
Query: 166 QDGKIRVWKVSS----KDASIHKRVGTL---PTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218
D IR+W V S H +V ++ P +K+ I N + + ++ +
Sbjct: 310 SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA 369
Query: 219 ----HFDAISSLSMSEDQNLLYSASWDKTFKVWR 248
H + SL+MS D + SA+ D+T ++WR
Sbjct: 370 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 241 DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGS--ADGTVKVWRRELQGKGTK 298
D+ ++W CL +V AH + + + + +G A + +W+ K +
Sbjct: 311 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE 370
Query: 299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFW 336
L V +L +SPD A V ++D + W
Sbjct: 371 ------LKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 22/154 (14%)
Query: 117 AAAGDLLYTGSDSKNIRVWKNQREFSG------FKSNSGLVKAIVIS--NEKIFS---GH 165
A G L +G + + VW + G F + G VKA+ + + G
Sbjct: 239 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 298
Query: 166 QDGKIRVWKVSS----KDASIHKRVGTL---PTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218
D IR+W V S H +V ++ P +K+ I N + + ++ +
Sbjct: 299 SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA 358
Query: 219 ----HFDAISSLSMSEDQNLLYSASWDKTFKVWR 248
H + SL+MS D + SA+ D+T ++WR
Sbjct: 359 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 241 DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGS--ADGTVKVWRRELQGKGTK 298
D+ ++W CL +V AH + + + + +G A + +W+ K +
Sbjct: 300 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE 359
Query: 299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFW 336
L V +L +SPD A V ++D + W
Sbjct: 360 ------LKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI-VAGFDGLVF 277
H ++ + +++ +LL+S S D + VW + + + L ++ H + SI V F
Sbjct: 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCV 90
Query: 278 TGSADGTVKVW 288
TGSAD ++K+W
Sbjct: 91 TGSADYSIKLW 101
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 348 LRGHK--LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405
L GH+ L + G+L+FS S D S +W E L L GH+G + + V
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER--LGTLDGHTGTIWSIDV--- 82
Query: 406 DESLSREKRWILYSGSLDKSVKMWRVS 432
+ ++ +GS D S+K+W VS
Sbjct: 83 -DCFTK----YCVTGSADYSIKLWDVS 104
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 71/189 (37%), Gaps = 22/189 (11%)
Query: 209 RRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWR---------TSDYKCLESVI 259
R R + H + + ++++S +Y+ KVW S CL
Sbjct: 40 RHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLN--- 95
Query: 260 AHDDAVNSIVAGFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAIS 318
D+ + S DG + G T+ +W K L A ALAIS
Sbjct: 96 -RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK----AELTSSAPACYALAIS 150
Query: 319 PDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTA--GNLVFSGSADMSICI 376
PD+ + + SDG + W+ N + +GH C+ + G +++G D ++
Sbjct: 151 PDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209
Query: 377 WRRKENEHI 385
W +E +
Sbjct: 210 WDLREGRQL 218
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGL-VF 277
H I+ L L S+S D K+W D ++I H V I G V
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197
Query: 278 TGSADGTVKVWR 289
+ S DGT+++W
Sbjct: 198 SASLDGTIRLWE 209
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 327 GSSDGLVNFWERELNLSHGGVLRGH--KLAILCLVTAGNLVFSGSADMSICIWRRKENEH 384
G+++G + + NL + + H ++ L +G + S S DM + IW K+ +
Sbjct: 115 GTTEGDIKVLDSNFNLQRE-IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173
Query: 385 ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQ 444
L GH V +A+ + R + + S SLD ++++W ++
Sbjct: 174 --PRTLIGHRATVTDIAI------IDRGRN--VLSASLDGTIRLWECGTGTTIHTFNRKE 223
Query: 445 HPLEG 449
+P +G
Sbjct: 224 NPHDG 228
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGL-VF 277
H I+ L L S+S D K+W D ++I H V I G V
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 194
Query: 278 TGSADGTVKVWR 289
+ S DGT+++W
Sbjct: 195 SASLDGTIRLWE 206
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 327 GSSDGLVNFWERELNLSHGGVLRGH--KLAILCLVTAGNLVFSGSADMSICIWRRKENEH 384
G+++G + + NL + + H ++ L +G + S S DM + IW K+ +
Sbjct: 112 GTTEGDIKVLDSNFNLQRE-IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
Query: 385 ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQ 444
L GH V +A+ + R + + S SLD ++++W ++
Sbjct: 171 --PRTLIGHRATVTDIAI------IDRGRN--VLSASLDGTIRLWECGTGTTIHTFNRKE 220
Query: 445 HPLEG 449
+P +G
Sbjct: 221 NPHDG 225
>pdb|3LKD|A Chain A, Crystal Structure Of The Type I Restriction-Modification
System Methyltransferase Subunit From Streptococcus
Thermophilus, Northeast Structural Genomics Consortium
Target Sur80
pdb|3LKD|B Chain B, Crystal Structure Of The Type I Restriction-Modification
System Methyltransferase Subunit From Streptococcus
Thermophilus, Northeast Structural Genomics Consortium
Target Sur80
Length = 542
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 144 FKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPS 203
K ++G V AIV+ + +F G+ +G IR K ++ +I +G LP F S+ P+
Sbjct: 347 LKQDNG-VXAIVLPHGVLFRGNAEGTIR--KALLEEGAIDTVIG-LPA-NIFFNTSI-PT 400
Query: 204 NYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT 249
I ++++R + DA ++QN+ A +K +++
Sbjct: 401 TVIILKKNRTNRDVYFIDASKEFDKGKNQNIXTDAHIEKILNAYKS 446
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421
G + + S+D S+ I+ + I ++ L GH GPV +A IL S S
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGN------ILASCS 78
Query: 422 LDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP 461
D+ V +WR + + H GH + NS+ +AP
Sbjct: 79 YDRKVIIWREENG-----TWEKSHEHAGHDSSVNSVCWAP 113
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 29/148 (19%)
Query: 324 VYCGSSDGLVNFWERELN----------LSHGGVLRGHKLAILCLVTAGNLVFSGSADMS 373
+ S G V WE + N H ++ + + ++++G SGS D+
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIV-----STVSVLSSGTQAVSGSKDIC 150
Query: 374 ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433
I +W + + LS H+ V C+A +S + S S D + +W
Sbjct: 151 IKVWDLAQ--QVVLSSYRAHAAQVTCVAASPHKDS-------VFLSCSEDNRILLWDTRC 201
Query: 434 QAPPLVSTTQQHPLEGHGVAPNSLPYAP 461
P Q G P SL + P
Sbjct: 202 PKP-----ASQIGCSAPGYLPTSLAWHP 224
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF--DGL 275
+H D +S++S+ S S D KVW + L S AH V + A D +
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184
Query: 276 VFTGSADGTVKVW 288
+ S D + +W
Sbjct: 185 FLSCSEDNRILLW 197
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 71/186 (38%), Gaps = 36/186 (19%)
Query: 272 FDGLVFTGSADGTVKVW--RREL-------QGKGTKHFFSQTLLKQECA----VTALAIS 318
+D ++ T SAD VK+W RR Q G K SQ + A V L +
Sbjct: 198 YDYILATASADSRVKLWDVRRASGCLITLDQHNGKK---SQAVESANTAHNGKVNGLCFT 254
Query: 319 PDAAIVYCGSSDGLVNFW-----ERELNLSHGGVLRGHKLAILCLVTAG---NLVFSGSA 370
D + +D + W E L +++G V K + V+ G VF
Sbjct: 255 SDGLHLLTVGTDNRMRLWNSSNGENTL-VNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG 313
Query: 371 DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430
+I ++ E I +ML GH V C + + + LYSGS D ++ W
Sbjct: 314 S-TIAVYTVYSGEQI--TMLKGHYKTVDCCVFQSNFQE--------LYSGSRDCNILAWV 362
Query: 431 VSEQAP 436
S P
Sbjct: 363 PSLYEP 368
>pdb|1BWD|A Chain A, Inosamine-Phosphate Amidinotransferase Strb1 From
Streptomyces Griseus
pdb|1BWD|B Chain B, Inosamine-Phosphate Amidinotransferase Strb1 From
Streptomyces Griseus
Length = 348
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 85 VSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAA----GDLLYTGSDSKN 131
+S P P DD ++P G + +E ++ A DLLY SDS N
Sbjct: 149 LSAPKPRLTDDSYAPQAPAGERLTDEEPVFDAANVLRFGTDLLYLVSDSGN 199
>pdb|4FTW|A Chain A, Crystal Structure Of A Carboxyl Esterase N110cL145H AT 2.3
ANGSTROM Resolution
Length = 285
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 13/131 (9%)
Query: 338 RELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPV 397
R+L+ H L L L G FS M++ + R+ E ++ + G SG
Sbjct: 139 RDLDAFHDERLAEEGLPPEALALVG---FSQGTMMALHVAPRRAEE---IAGIVGFSG-- 190
Query: 398 KCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVS---TTQQHPLEG--HGV 452
+ LA E+ E + +L G D V +S L TT H ++G HG+
Sbjct: 191 RLLAPERLAEEARSKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHVMKGTGHGI 250
Query: 453 APNSLPYAPSF 463
AP+ L A +F
Sbjct: 251 APDGLSVALAF 261
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 253 KCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQG 294
+C++ +A +AVN++VAG DG+V G K + + LQG
Sbjct: 46 ECVQCDLADANAVNAMVAGCDGIVHLGGIS-VEKPFEQILQG 86
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 253 KCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQG 294
+C++ +A +AVN++VAG DG+V G K + + LQG
Sbjct: 46 ECVQCDLADANAVNAMVAGCDGIVHLGGIS-VEKPFEQILQG 86
>pdb|3NVN|A Chain A, Molecular Mechanism Of Guidance Cue Recognition
Length = 389
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 32/79 (40%)
Query: 112 HIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIR 171
I S D+LYTG + N+ +G +N+ + + + + G +G +
Sbjct: 15 EIISTYLIDDVLYTGVNGAVYTFSNNELNKTGLTNNNNYITTSIKVEDTLVCGTNNGNPK 74
Query: 172 VWKVSSKDASIHKRVGTLP 190
WK+ + ++ G P
Sbjct: 75 CWKIDGSEDPKYRGRGYAP 93
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 364 LVFSGSADMSICIWRRKENEHICLSMLT-GHSGPVKCLAVEKDDESLSREKRWILYSGSL 422
L S + D + IW + N S L H+ V CL S + +IL +GS
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCL-------SFNPYSEFILATGSA 296
Query: 423 DKSVKMWRV 431
DK+V +W +
Sbjct: 297 DKTVALWDL 305
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 364 LVFSGSADMSICIWRRKENEHICLSMLT-GHSGPVKCLAVEKDDESLSREKRWILYSGSL 422
L S + D + IW + N S L H+ V CL S + +IL +GS
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCL-------SFNPYSEFILATGSA 296
Query: 423 DKSVKMWRV 431
DK+V +W +
Sbjct: 297 DKTVALWDL 305
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 364 LVFSGSADMSICIW-RRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL 422
L S + D + IW R N + H+ V CL S + +IL +GS
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL-------SFNPYSEFILATGSA 300
Query: 423 DKSVKMWRV 431
DK+V +W +
Sbjct: 301 DKTVALWDL 309
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 364 LVFSGSADMSICIW-RRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL 422
L S + D + IW R N + H+ V CL S + +IL +GS
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL-------SFNPYSEFILATGSA 298
Query: 423 DKSVKMWRV 431
DK+V +W +
Sbjct: 299 DKTVALWDL 307
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 364 LVFSGSADMSICIW-RRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL 422
L S + D + IW R N + H+ V CL S + +IL +GS
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL-------SFNPYSEFILATGSA 302
Query: 423 DKSVKMWRV 431
DK+V +W +
Sbjct: 303 DKTVALWDL 311
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 364 LVFSGSADMSICIWRRKENEHICLSM-LTGHSGPVKCLAVEKDDESLSREKRWILYSGSL 422
L S + D + IW + N S + H+ V CL S + +IL +GS
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCL-------SFNPYSEFILATGSA 294
Query: 423 DKSVKMWRV 431
DK+V +W +
Sbjct: 295 DKTVALWDL 303
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,912,062
Number of Sequences: 62578
Number of extensions: 606513
Number of successful extensions: 2081
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1348
Number of HSP's gapped (non-prelim): 366
length of query: 474
length of database: 14,973,337
effective HSP length: 102
effective length of query: 372
effective length of database: 8,590,381
effective search space: 3195621732
effective search space used: 3195621732
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)